RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy144
(254 letters)
>3gb5_A IYD-1, iodotyrosine dehalogenase 1; iodide salvage, flavoprotein,
FMN, membrane, NADP, oxidoreductase, transmembrane; HET:
FMN; 2.00A {Mus musculus} PDB: 3gfd_A* 3gh8_A* 3tnz_A*
3to0_A*
Length = 259
Score = 269 bits (689), Expect = 2e-91
Identities = 137/238 (57%), Positives = 183/238 (76%)
Query: 16 SNAESETDEDDEFAPALPEALDHISYDFVKKSVEDIRQRSEEFYQLMNARRTVRFFSDEA 75
S + + +ED E E+++HI + + +++R RS+EFY+L+N RR+VRF S E
Sbjct: 15 STEDLQVEEDAEEWQEAEESVEHIPFSHTRYPEQEMRMRSQEFYELLNKRRSVRFISSEH 74
Query: 76 VPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWT 135
VP E+I N+IK AGT+PSGAHTEPWTFV+V+D DMK KIR+I+E EE INY KRMGK W
Sbjct: 75 VPMEVIENVIKAAGTAPSGAHTEPWTFVVVKDPDMKHKIREIIEEEEEINYMKRMGKRWV 134
Query: 136 TDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQY 195
TDL+ L+T+W KEYL TAP L+++FKQ +GF GK+K HYY+E+SVS+ACG++LAA+Q
Sbjct: 135 TDLKKLRTNWIKEYLDTAPVLILIFKQVHGFAANGKKKVHYYNEISVSIACGLLLAALQN 194
Query: 196 CGLVTLTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVE 253
GLVT+T+TPLN GP LR LL RP +EKL +LLP+GYP+ D TVP+LKRK ++ I+V
Sbjct: 195 AGLVTVTTTPLNCGPRLRVLLGRPSHEKLLVLLPVGYPSRDATVPDLKRKALDQIMVT 252
>3eo8_A BLUB-like flavoprotein; YP_001089088.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: FMN; 1.74A {Clostridium difficile 630}
Length = 219
Score = 177 bits (450), Expect = 9e-56
Identities = 46/216 (21%), Positives = 87/216 (40%), Gaps = 24/216 (11%)
Query: 57 EFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRD 116
E + R++VR F ++ V E I +IK AG +PSG + + W FV+++ +D+ KI D
Sbjct: 3 ELQDTIFKRQSVRKFKNQDVSDEDILKMIKAAGAAPSGKNIQNWHFVVIKRRDLMEKIAD 62
Query: 117 IVESEER--INYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFK------- 167
++ +++ + ++ + R ++ YL AP LV+VF + Y
Sbjct: 63 VITKKQQEILVEMDKVSVDKANRFRKFVKNFTLFYL-KAPVLVLVFTKVYNPSGYYELEL 121
Query: 168 ------EEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVT-LTSTPLNAGPALRTLLDRPG 220
K S+ A + G + ++ A + +L+
Sbjct: 122 IDAPKETIDKLFIRNPGMQSLGAAIENFTLSAIELGYGSCWLTSQNYAADEIEAVLEAET 181
Query: 221 N-----EKLALLLPIGYPALDCTVPNLKRKDIEDII 251
L +L +G P + P +K +E+I
Sbjct: 182 GFEKGEYFLGAMLALGVPEDNLKSP--SKKPVEEIC 215
>4dn2_A Nitroreductase; structural genomics, protein structure initiative,
NEW YORK structural genomix research consortium, nysgrc;
HET: FMN; 1.50A {Geobacter metallireducens} PDB: 4g8s_A*
Length = 208
Score = 160 bits (406), Expect = 3e-49
Identities = 50/214 (23%), Positives = 92/214 (42%), Gaps = 17/214 (7%)
Query: 38 HISYDFVKKSVEDIRQRSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHT 97
H V E++ +S E + + RR+VR FSD V E + ++ A +PS A+
Sbjct: 5 HHHSSGVDLGTENLYFQSMETLEAIRTRRSVRKFSDRPVEPEKLRAVLDAARLAPSWANM 64
Query: 98 EPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLV 157
+ W FV+VED+ K +I ++ E K++ ++ L AP ++
Sbjct: 65 QCWRFVVVEDQATKVQISELSYVEAYFGPK------------GYKSNPAQKALAEAPVVI 112
Query: 158 VVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLD 217
+ + + G+ + Y+ V +A ++ A GL ++ + L LL
Sbjct: 113 IACGEP---PQSGELRGQQYYLTDVGIAAQNLMLAAHDLGLGSVFVGVFDE-QQLGELLG 168
Query: 218 RPGNEKLALLLPIGYPALDCTVPNLKRKDIEDII 251
P ++ L P+GYP RK +++I+
Sbjct: 169 IPAELRIVGLFPLGYPLEG-PKAGPSRKPLDEIV 201
>3gr3_A Nitroreductase; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2,
flavoprotein; HET: MSE FMN UNL; 1.45A {Bartonella
henselae str}
Length = 230
Score = 147 bits (372), Expect = 5e-44
Identities = 35/219 (15%), Positives = 85/219 (38%), Gaps = 21/219 (9%)
Query: 54 RSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAK 113
+ +Q + +R+++R F+D+ V +E I I+K A +PSG + +PW +++ K ++
Sbjct: 5 APIDIFQSILSRKSIRAFTDQPVTQETIREILKLAARAPSGTNLQPWQVIVLTGKILQKV 64
Query: 114 IRDIVESEERINYDKRMGKEWTTDLRPLKTSWQKE------------------YLTTAPY 155
+++ + +R + R S +++ L
Sbjct: 65 GQELSQLVLSGIKGEREYHYYPRQWREPYLSRRRKVGLDLYKSLGIQKGDQEKMLHQKAK 124
Query: 156 LVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPL-NAGPALRT 214
+ + G + + + ++ A + GL T + +R+
Sbjct: 125 NFLFYGAPVGLLFTIDHDMEMGSWLDLGMFMQTIMLAARGFGLDTCAQAAFADYHKQIRS 184
Query: 215 LLDRPGNEKLALLLPIGYPALDCTVPNLK--RKDIEDII 251
LL P + + + +GY ++ N + R+ I++ +
Sbjct: 185 LLSVPSDRHIICGMALGYRDMNAPENNFETEREPIDNFV 223
>3ek3_A Nitroreductase; YP_211706.1, structural genom joint center for
structural genomics, JCSG, protein structu initiative,
PSI; HET: FMN MPD; 1.70A {Bacteroides fragilis nctc
9343}
Length = 190
Score = 136 bits (345), Expect = 3e-40
Identities = 45/206 (21%), Positives = 76/206 (36%), Gaps = 24/206 (11%)
Query: 54 RSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAK 113
++ E + + ARR+VR + + +P + ++ I++ +PSG H E W F V + +
Sbjct: 3 KTNEVLETIKARRSVRAYDRKQIPADDLNAILEAGAYAPSGMHYETWHFTAVCNTVKLEE 62
Query: 114 IRDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRK 173
+ + ++ K LR S AP LV+V +
Sbjct: 63 LNERIK--------GAFAKSDDKHLRERGHSETYCCYYHAPTLVIVSNE----------P 104
Query: 174 KHYYHEMSVSLACGIMLAAIQYCGL------VTLTSTPLNAGPALRTLLDRPGNEKLALL 227
K ++ M + A M A G+ T+ A T L P N K+
Sbjct: 105 KQWWAGMDCACAIENMFLAATSLGIASCWINQLGTTCDDPEVRAYLTSLGVPENHKVYGC 164
Query: 228 LPIGYPALDCTVPNLKRKDIEDIIVE 253
+ +GY A + K IVE
Sbjct: 165 VALGYKAEGALLKEKTVKAGTITIVE 190
>2isk_A BLUB; oxidoreductase, flavin, monooxygenase, flavin destructase,
vitamin B12, dithionite, charge transfer complex,
flavoprotein; HET: FNR; 2.10A {Sinorhizobium meliloti}
PDB: 2isj_A* 2isl_A*
Length = 230
Score = 129 bits (325), Expect = 7e-37
Identities = 42/209 (20%), Positives = 78/209 (37%), Gaps = 17/209 (8%)
Query: 53 QRSEEFYQLMNARRTVR-FFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMK 111
Y+ + RR VR F E + +E+I ++ A +PS +PW FV+V + +
Sbjct: 21 DERAAVYRAIETRRDVRDEFLPEPLSEELIARLLGAAHQAPSVGFMQPWNFVLVRQDETR 80
Query: 112 AKIRDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVF--KQTYGFKEE 169
K+ + + E R LK ++ AP + V + G
Sbjct: 81 EKVWQAFQ-RANDEAAEMFSGERQAKYRSLKLEGIRK----APLSICVTCDRTRGGAVVL 135
Query: 170 GKRKKHYYHEMSVSLACG-IMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEKLALLL 228
G+ S A + LAA G+ + + ++ +L P + ++ L
Sbjct: 136 GRTHNPQMDLYSTVCAVQNLWLAARAE-GVGVGWVSIFHE-SEIKAILGIPDHVEIVAWL 193
Query: 229 PIGYPALDCTVPNL------KRKDIEDII 251
+G+ P L +R +ED++
Sbjct: 194 CLGFVDRLYQEPELAAKGWRQRLPLEDLV 222
>3gfa_A Putative nitroreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE FMN GOL; 1.35A {Clostridium difficile
630}
Length = 198
Score = 120 bits (302), Expect = 9e-34
Identities = 37/199 (18%), Positives = 79/199 (39%), Gaps = 13/199 (6%)
Query: 59 YQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIV 118
++ RR++R + ++++ E I II+ +PS + +PW FV++ +K+ ++ ++ +
Sbjct: 4 SDSISKRRSIRKYKNQSISHETIEKIIEAGINAPSSKNRQPWRFVVITEKEKESMLKAMS 63
Query: 119 ESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVF----KQTYGFKEEGKRKK 174
+ + D + + ++ E + AP + + K +R
Sbjct: 64 KGIQNEINDNGLLPGSRQHIA--GANYTVEIMKQAPVTIFILNILGKSPLEKLSPEERFY 121
Query: 175 HYYHEMSVSLACG-IMLAAIQYCGLVTL-TSTPLNAGPALRTLLDRPGNEKLALLLPIGY 232
+ S+ A + L A GL +L A L L+ +L + +GY
Sbjct: 122 EMANMQSIGAAIQNMSLTA-VELGLGSLWICDVYFAYRELCEWLNTD--SQLVAAISLGY 178
Query: 233 PALDCTVPNLKRKDIEDII 251
P D R + D+
Sbjct: 179 P--DEEPSRRPRLQLSDVT 195
>3ge5_A Putative NAD(P)H:FMN oxidoreductase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: FMN UNL; 1.70A {Porphyromonas
gingivalis W83}
Length = 198
Score = 113 bits (286), Expect = 2e-31
Identities = 37/216 (17%), Positives = 74/216 (34%), Gaps = 32/216 (14%)
Query: 37 DHISYDFVKKSVEDIRQRSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAH 96
H + + ++ I Q RR+VR F D V +E + I++ +PS +
Sbjct: 9 HHHHENLYFQGMKQIPQDFRLIEDFFRTRRSVRKFIDRPVEEEKLMAILEAGRIAPSAHN 68
Query: 97 TEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYL 156
+PW F++V +++ + ++ Q+ + AP
Sbjct: 69 YQPWHFLVVREEEGRKRLAPC---------------------------SQQPWFPGAPIY 101
Query: 157 VVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLL 216
++ + KR ++ S+A M+ GL + +
Sbjct: 102 IITLGDH---QRAWKRGAGDSVDIDTSIAMTYMMLEAHSLGLGCTWVCAFDQ-ALCSEIF 157
Query: 217 DRPGNEKLALLLPIGYPALDCT-VPNLKRKDIEDII 251
D P + +L +GY RK IE+++
Sbjct: 158 DIPSHMTPVSILALGYGDPTVPPREAFNRKTIEEVV 193
>3g14_A Nitroreductase family protein; structural genom joint center for
structural genomics, JCSG, protein structu initiative,
PSI-2, oxidoreductase; HET: MSE; 1.75A {Clostridium
novyi}
Length = 193
Score = 112 bits (281), Expect = 8e-31
Identities = 37/196 (18%), Positives = 79/196 (40%), Gaps = 26/196 (13%)
Query: 57 EFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRD 116
EFY+++ R++++ F A+ ++ + II A +PS + P+ F++VE +K I +
Sbjct: 3 EFYEVIKKRKSIKKFEQTAIDRDKLLKIIDMAMRAPSWKNKTPYKFIVVESDKLKLDIAN 62
Query: 117 IVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHY 176
+E++ E + +P +V +E G
Sbjct: 63 AIENKTSAA---------------------SEAVLNSPMTIVA---VANPEESGDVSGKE 98
Query: 177 YHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPALD 236
+ + ++A ++ G T N ++ L P N ++ L P+G P
Sbjct: 99 IYLIDTAIAMEHIVLGATDEGYGTCWIAAFNE-NKIKEALKIPDNLRVVALTPLGVPKDS 157
Query: 237 C-TVPNLKRKDIEDII 251
P+ +KD+++ +
Sbjct: 158 AEDEPHHPKKDMDEYL 173
>3gag_A Putative NADH dehydrogenase, NADPH nitroreductase; FMN-dependent
nitroreductase-like fold, structural genomics; HET: MSE
FMN; 1.70A {Streptococcus mutans}
Length = 206
Score = 111 bits (281), Expect = 1e-30
Identities = 39/204 (19%), Positives = 87/204 (42%), Gaps = 15/204 (7%)
Query: 57 EFYQLMNARRTVRFF-SDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIR 115
++ ++ R +VR F D +P ++I ++++ A +PSG + +PW V+V++K+ + ++
Sbjct: 5 DYLNFLDGRVSVRRFDPDAVLPNDLIKDMLEHASYAPSGNNFQPWRVVVVKNKNKQEDLK 64
Query: 116 DIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLT-------TAPYLVVVFKQTYGFKE 168
+ + ++ + + + T WQ+ ++ A +Q +
Sbjct: 65 KLAALQPQVATASAVFLLFGDENAYDLTWWQEFHVQKGIITKDEAAARAERIRQYFDLHP 124
Query: 169 EGKRKKHYYHEMSVSLACG-IMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEKLALL 227
E K+ + V L +M Y G ++ ++ A++T LD P + L+
Sbjct: 125 E--DKETQGLRLDVGLFAMNLMQVVRVY-GYDSVPMRGVDF-DAIKTYLDMPNGWEPILM 180
Query: 228 LPIGYPALDCTVPNLKRKDIEDII 251
LP+G RK + +
Sbjct: 181 LPVGKALQAGNPH--VRKSVAEFA 202
>2wzv_A NFNB protein; nitroreductase, oxidoreductase; HET: MSE FMN; 1.75A
{Mycobacterium smegmatis} PDB: 2wzw_A*
Length = 235
Score = 112 bits (281), Expect = 2e-30
Identities = 33/221 (14%), Positives = 69/221 (31%), Gaps = 22/221 (9%)
Query: 54 RSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAK 113
++ +L+ RR VR F + VP+E + + + AG +PS ++T+PW +V
Sbjct: 15 LAQAAERLIKGRRAVRAFRPDEVPEETMRAVFELAGHAPSNSNTQPWHVEVVSGAARDRL 74
Query: 114 IRDIVE---SEERINYDKRMGKEWTTDLRP--------------LKTSWQKEYLTTAPYL 156
+V E + L+ +
Sbjct: 75 AEALVTAHAEERVTVDFPYREGLFQGVLQERRADFGSRLYAALGIARDQTDLLQGYNTES 134
Query: 157 VVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLN-AGPALRTL 215
+ + + + + ++ A+ G+ + L+ +R
Sbjct: 135 LRFYGAPHVAMLFAPNNTEARIAGDMGIYAQTLMLAMTAHGIASCPQALLSFYADTVRAE 194
Query: 216 LDRPGNEKLALLLPIGYPALDCTVPNLK--RKDIEDIIVEF 254
L N KL + + GY V ++ R + + F
Sbjct: 195 LGVE-NRKLLMGISFGYADDTAAVNGVRIPRAGLSE-TTRF 233
>3pxv_A Nitroreductase; flavoprotein, FMN-dependent, joint center for
structural genomics, protein structure initiative,
PSI-biology; HET: MSE FMN; 2.30A {Desulfitobacterium
hafniense}
Length = 189
Score = 109 bits (275), Expect = 6e-30
Identities = 32/202 (15%), Positives = 64/202 (31%), Gaps = 25/202 (12%)
Query: 57 EFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRD 116
E +++ R + R F +E E++ I + A +PSG + + W ++V++K++ ++
Sbjct: 5 ETLKVIAERYSCRDFKNEMPSDELLQAIAEAAIQAPSGMNRQAWRVIVVKNKELMQEMEA 64
Query: 117 IVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHY 176
+ AP ++VV ++
Sbjct: 65 EGL--------AYLAGMEDQSSYNRIMERGGRLFYGAPCMIVVP---------IDPTQYG 107
Query: 177 YHEMSVSLACG-IMLAAIQ------YCGLVTLTSTPLNAGPALRTLLDRPGNEKLALLLP 229
+ + C I LAA CG L L P +
Sbjct: 108 PALVDCGILCQTIALAATSLGIANIMCGYTGLAFASGLRAEEFSKRLGFPEGYAFGCSVL 167
Query: 230 IGYPALDCTVPNLKRKDIEDII 251
+G+ P++ KD +
Sbjct: 168 LGHAN-TTKPPHVPDKDKITYV 188
>2b67_A COG0778: nitroreductase; alpha-beta sandwich, FMN binding pocket,
structural genomics protein structure initiative; HET:
MSE FMN; 2.05A {Streptococcus pneumoniae} SCOP: d.90.1.1
Length = 204
Score = 106 bits (267), Expect = 2e-28
Identities = 34/208 (16%), Positives = 79/208 (37%), Gaps = 18/208 (8%)
Query: 54 RSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAK 113
+ +F +L R + F+D+ V + + I+ A +PS +++PW FV+V +K+ +
Sbjct: 2 NAMKFLELNKKRHATKHFTDKLVDPKDVRTAIEIATLAPSAHNSQPWKFVVVREKNAELA 61
Query: 114 IRDIVESEERIN---------YDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTY 164
+ E+++ D + K R + + +
Sbjct: 62 KLAYGSNFEQVSSAPVTIALFTDTDLAK----RARKIARVGGANNFSEEQLQYFMKNLPA 117
Query: 165 GFKEEGKRKKHYYHEMSVSLACG-IMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEK 223
F +++ Y ++ L ++LA G+ + + + +L+ +
Sbjct: 118 EFARYSEQQVSDYLALNAGLVAMNLVLALTDQ-GIGSNIILGFDK-SKVNEVLEIEDRFR 175
Query: 224 LALLLPIGYPALDCTVPNLKRKDIEDII 251
LL+ +GY + R +++II
Sbjct: 176 PELLITVGYTDEK--LEPSYRLPVDEII 201
>2i7h_A Nitroreductase-like family protein; alpha-beta, structural
genomics, PSI-2, protein structure in midwest center for
structural genomics, MCSG; HET: MSE FMN; 2.30A {Bacillus
cereus}
Length = 189
Score = 104 bits (261), Expect = 8e-28
Identities = 37/201 (18%), Positives = 74/201 (36%), Gaps = 23/201 (11%)
Query: 53 QRSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKA 112
++ RR+VR F+D+AV K+++ ++ A +P+ H EPW + + K
Sbjct: 5 TTYTSIANVIKERRSVRTFTDKAVEKDLLIELLNDATWAPNHKHREPWNCKLYIGEGRKK 64
Query: 113 KIRDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKR 172
+ + +T + R + + + P +VV+ E+ ++
Sbjct: 65 LV-------------DAVLNSFTEEERAKRGKILSDRFLSTPAQIVVYM-----NEDPRQ 106
Query: 173 KKHYYHEMSVSLAC-GIMLAAIQYCGLVTL-TSTPLNAGPALRTLLDRPGNEKLALLLPI 230
+ + L A + GL + S LN P + +++ +L I
Sbjct: 107 IQRDEDYAATCAFMQNFQLLAWER-GLGCVWKSGGLNYNPLFIEGIGLTRGQRIVGILHI 165
Query: 231 GYPALDCTVPNLKRKDIEDII 251
GY D R I + +
Sbjct: 166 GYF--DKAPEGKARTPITEKM 184
>2r01_A Nitroreductase family protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE FMN; 1.15A {Chlorobium tepidum tls}
Length = 210
Score = 102 bits (257), Expect = 6e-27
Identities = 34/197 (17%), Positives = 68/197 (34%), Gaps = 32/197 (16%)
Query: 57 EFYQLMNARRTVRFFSDE-AVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIR 115
+ +L+ R++R F + AV + ++++ +PS A+ + F+ V DM K+
Sbjct: 14 KLRELVARSRSIRRFDEHVAVNDATLRDLVELVCYTPSAANRQLLRFLPVTGADMSDKVF 73
Query: 116 DIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKH 175
+ ++W + A LV++ + +
Sbjct: 74 PCL-------KWAGYLEDW---------PGPEPGERPAAALVML----------CRNEDL 107
Query: 176 YYHEMSVSLACG-IMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPA 234
+A IML A L ++ L L P + L++ +G PA
Sbjct: 108 PGAACDSGIAAQTIMLGA-AEKELGGCIVAAIDR-ERLMASLGIPDAWTVLLVIALGKPA 165
Query: 235 LDCTVPNLKRKDIEDII 251
+ + K +DI
Sbjct: 166 ETVVID--QIKPGDDIR 180
>3e39_A Putative nitroreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE FMN PGE; 1.70A {Desulfovibrio
desulfuricans subsp}
Length = 178
Score = 99.6 bits (249), Expect = 3e-26
Identities = 35/201 (17%), Positives = 66/201 (32%), Gaps = 36/201 (17%)
Query: 55 SEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKI 114
Q + RR++R ++DEAV E + I++ +PSG + +P F+++ D + I
Sbjct: 5 ENPVLQAIRQRRSIRRYTDEAVSDEAVRLILEAGIWAPSGLNNQPCRFLVIRADDPRCDI 64
Query: 115 RDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKK 174
+ A +++V F +
Sbjct: 65 LAAHTR-------------------------YGHIVRGAKVIILV------FLDREAMYN 93
Query: 175 HYYHEMSVSLACGIMLAAIQYCGLVT--LTSTPLNAGPALRTLLDRPGNEKLALLLPIGY 232
+ A ML A L L A L L P + G+
Sbjct: 94 EVKDHQAAGAAVQNMLLAAHALQLGAVWLGEIINQAATLLPALALDPARLSFEAAIAAGH 153
Query: 233 PALDCTVPNLKRKDIEDIIVE 253
PA + + R+ + ++++E
Sbjct: 154 PAQN---GSSSRRPLAELLLE 171
>3h4o_A Nitroreductase family protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE FMN; 1.50A {Clostridium difficile 630}
PDB: 3koq_A*
Length = 191
Score = 99.7 bits (249), Expect = 5e-26
Identities = 33/207 (15%), Positives = 74/207 (35%), Gaps = 37/207 (17%)
Query: 49 EDIRQRSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDK 108
E++ + F +L R + R + D V KE + ++ A +P+G + +P +++++K
Sbjct: 13 ENLYFQGMNFVELAKKRYSCRNYQDRKVEKEKLEKVLDVARIAPTGGNRQPQRLIVIQEK 72
Query: 109 DMKAKIRDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAP-YLVVVFKQTYGFK 167
+ K+ + + AP ++V + +
Sbjct: 73 EGINKL------------------------------SKAANIYDAPLAILVCGDKDKVWT 102
Query: 168 EEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEKLALL 227
K+ ++ S+ M+ GL ++ N +R P N + +
Sbjct: 103 RPFDGKQLT--DIDTSIVTDHMMLQATELGLASVWVCYFNP-DIIREEFSLPDNLEPINI 159
Query: 228 LPIGYPALDCTVPNL---KRKDIEDII 251
L +GY + P R + +I+
Sbjct: 160 LLMGYESKIPESPERHEKTRVPLSEIV 186
>3e10_A Putative NADH oxidase; NP_348178.1, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative; HET: MSE FMN EPE; 1.40A {Clostridium
acetobutylicum}
Length = 168
Score = 98.8 bits (247), Expect = 6e-26
Identities = 37/195 (18%), Positives = 74/195 (37%), Gaps = 37/195 (18%)
Query: 60 QLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVE 119
++N RR++R + + V KE I +++ A +PS + +PW F+++ED++ K+ +
Sbjct: 3 DIINNRRSIRNYKGKKVEKEKIEKLLRAAMQAPSAGNQQPWEFIVLEDRENIDKLSNF-- 60
Query: 120 SEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHE 179
+ + L TAP +V+ +E K K E
Sbjct: 61 -----------------------SKYAN-SLKTAPLAIVL------LADEEKMKISEMWE 90
Query: 180 MSVSLACGIMLAAIQYCGLVTL---TSTPLNAGPALRTLLDRPGNEKLALLLPIGYPALD 236
++ A +L Y L + L+ + + N K ++ +GYP +
Sbjct: 91 QDMAAAAENILLEAAYLDLGAVWLGAQPIEERVKNLKEMFNLKSNIKPFCVISVGYP--E 148
Query: 237 CTVPNLKRKDIEDII 251
+ + I
Sbjct: 149 NSENKFIDRFDAKRI 163
>2fre_A NAD(P)H-flavin oxidoreductase; FMN, structural genomics, PSI,
protein struc initiative, midwest center for structural
genomics; HET: FMN; 1.90A {Agrobacterium tumefaciens
str} SCOP: d.90.1.1
Length = 200
Score = 98.2 bits (245), Expect = 2e-25
Identities = 39/213 (18%), Positives = 66/213 (30%), Gaps = 38/213 (17%)
Query: 52 RQRSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMK 111
RQ L R + R F +PKE + I+ A +PS ++ +PW FV
Sbjct: 7 RQSEYPVDPLFLDRWSPRAFDGSPMPKEHLLTILDAAHWAPSASNHQPWRFVYAHKDSED 66
Query: 112 AKIRDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGK 171
+ L +++ A L+ V + + EG+
Sbjct: 67 WPL-----------------------FVELLMEGNQKWAKNASVLLFVISRDHTISHEGE 103
Query: 172 RKKHYYHEMSVSLACG-IMLAAIQYCGLVTLTSTPLNA--GPALRTLLDRPGNEKLALLL 228
+K H A + + A G + + LD P K+ +
Sbjct: 104 KKPSATHSFDAGAAWFSLAMQA-HLLGYHA---HGMGGIFKDRIVEKLDIPDGFKVEAGV 159
Query: 229 PIGYPALDCTVPNL--------KRKDIEDIIVE 253
IG +P+ KR + D+ E
Sbjct: 160 AIGTLTDKSILPDDLAEREVPSKRVPLADVAFE 192
>3of4_A Nitroreductase; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
oxidoreductase; HET: FMN UNL FAD; 1.90A {Idiomarina
loihiensis}
Length = 209
Score = 97.3 bits (242), Expect = 7e-25
Identities = 22/206 (10%), Positives = 61/206 (29%), Gaps = 11/206 (5%)
Query: 57 EFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRD 116
+L R FS + +++ ++ T + S +P+ +++ +K ++ ++ +
Sbjct: 3 YLEKLQQWRYATADFSGAHITDDVLDKLLNTTRLTASSYGLQPYCTLVIRNKGLREQLVN 62
Query: 117 IVESEERIN------YDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYG-FKEE 169
++++ + P + ++ T +
Sbjct: 63 HSFGQQKVADSSALVIFAAKTGAVADIVDPYISELSQQRQLTNEEAENTRNYFTQKLQAM 122
Query: 170 GKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPG-NEKLALLL 228
+ + + G L A + + + A +L
Sbjct: 123 SAATRKEWAVRQAYIGLGTFLLAAAELEVDSCPMEGIEH-DAYDNILSLKDLGLSTVFAC 181
Query: 229 PIGYPALDCTVPNLK--RKDIEDIIV 252
P+GY + T K R+ + V
Sbjct: 182 PVGYRSEADTTQFQKKVRQPLSRFKV 207
>3m5k_A Putative NADH dehydrogenase/NAD(P)H nitroreductas; structural
genomics, joint center for structural genomics; HET: MSE
FMN; 1.86A {Parabacteroides distasonis}
Length = 172
Score = 95.3 bits (238), Expect = 1e-24
Identities = 37/197 (18%), Positives = 69/197 (35%), Gaps = 39/197 (19%)
Query: 57 EFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRD 116
+ + + R++VR + D V KE I +I+ +PS PW F+IV D+ + +
Sbjct: 7 QTLETILNRKSVRKYKDRPVEKEKIDKLIRAGMAAPSSRDRRPWEFIIVTDRKALDTMAE 66
Query: 117 IVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHY 176
+ + L +VV + + +
Sbjct: 67 G-------------------------LPFAR-MLKETRQAIVVCG-------DTIKSSNA 93
Query: 177 YHEMSVSLACGIMLAAIQYCGL--VTLTSTPL-NAGPALRTLLDRPGNEKLALLLPIGYP 233
+ S A +L A + GL V P + +R L P + ++P+GYP
Sbjct: 94 WFL-DCSAASQNLLLAAESMGLGAVWTAVYPYPDRIEIVRKELRLPDHIMPLNVIPVGYP 152
Query: 234 ALDCTVPNLKRKDIEDI 250
T + +++ I
Sbjct: 153 MQKETPK--NKYNVQQI 167
>3bem_A Putative NAD(P)H nitroreductase YDFN; 2632848, putative
nitroreductase YDFN, structural genomics, center for
structural genomics, JCSG; HET: MSE FMN; 1.65A {Bacillus
subtilis}
Length = 218
Score = 96.6 bits (241), Expect = 2e-24
Identities = 40/210 (19%), Positives = 84/210 (40%), Gaps = 22/210 (10%)
Query: 56 EEFYQLMNARRTVR-FFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKI 114
EF L+N RR+ F S + KE ++ + + +PS + + +V V D+D+K K+
Sbjct: 14 AEFTHLVNERRSASNFLSGHPITKEDLNEMFELVALAPSAFNLQHTKYVTVLDQDVKEKL 73
Query: 115 RDIVESEERIN---------YDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYG 165
+ + ++ DK+ + + L Y +V
Sbjct: 74 KQAANGQYKVVSSSAVLLVLGDKQA---YQQAADIYEGLKVLGILNKQEYDHMVQDTVSF 130
Query: 166 FKEEGKRKKHYYHEMSVSLACG-IMLAAIQYCGLVTLTSTPLNAG---PALRTLLDRPGN 221
++ G++ K + SL+ ML+A G + P+ G A++ +L+
Sbjct: 131 YENRGEQFKRDEAIRNASLSAMMFMLSAAAA-GWD---TCPM-IGFDAEAVKRILNIDDQ 185
Query: 222 EKLALLLPIGYPALDCTVPNLKRKDIEDII 251
++ +++ IG + P RK + + +
Sbjct: 186 FEVVMMITIGKEKTESRRPRGYRKPVNEFV 215
>3kwk_A Putative NADH dehydrogenase/NAD(P)H nitroreductas; structur
genomics, joint center for structural genomics, JCSG;
HET: MSE FMN; 1.54A {Bacteroides thetaiotaomicron
vpi-5482}
Length = 175
Score = 94.6 bits (236), Expect = 3e-24
Identities = 39/197 (19%), Positives = 69/197 (35%), Gaps = 40/197 (20%)
Query: 57 EFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRD 116
+ R++VR + ++ V KE I +++ ++PSG PW FV+V D+ +
Sbjct: 11 AALDNIFERKSVRTYLNKGVEKEKIDLMLRAGMSAPSGKDVRPWEFVVVSDRAKLDSMAA 70
Query: 117 IVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHY 176
+ K LT A ++V G + +
Sbjct: 71 A-------------------------LPYAK-MLTQARNAIIVC---------GDSARSF 95
Query: 177 YHEMSVSLACGIMLAAIQYCGLVTL---TSTPLNAGPALRTLLDRPGNEKLALLLPIGYP 233
Y + S A +L A + GL + + +R P N ++P GYP
Sbjct: 96 YWYLDCSAAAQNILLAAESMGLGAVWTAAYPYEDRMEVVRKYTHLPENILPLCVIPFGYP 155
Query: 234 ALDCTVPNLKRKDIEDI 250
A ++ D + I
Sbjct: 156 ATKEQPK--QKYDEKKI 170
>3bm1_A Protein YDJA, nitroreductase; oxidoreductase; HET: FMN; 2.00A
{Escherichia coli} PDB: 3bm2_A
Length = 183
Score = 94.3 bits (235), Expect = 4e-24
Identities = 36/200 (18%), Positives = 70/200 (35%), Gaps = 20/200 (10%)
Query: 57 EFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRD 116
+ +L+ RR+ ++ A E + NI++ +P +PW F ++E + +
Sbjct: 2 DALELLINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQPWHFFVIEGEGRERFSAV 61
Query: 117 IVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHY 176
+ + D + + + AP ++ V EE + +
Sbjct: 62 LEQGAIAAGSDDKAIDKA------------RNAPFRAPLIITVV----AKCEENHKVPRW 105
Query: 177 YHEMSVSLAC-GIMLAAIQYCGLVTL-TSTPLNAGPALRTLLDRPGNEKLALLLPIGYPA 234
EMS A + +AA G + S L P +R +K+ L +G P
Sbjct: 106 EQEMSAGCAVMAMQMAA-VAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYLGTPQ 164
Query: 235 LDCTVPNLKRKDIEDIIVEF 254
L ++ D + F
Sbjct: 165 LK-ASTSINVPDPTPFVTYF 183
>3qdl_A Oxygen-insensitive NADPH nitroreductase; oxidoreductase; HET: FMN;
2.00A {Helicobacter pylori}
Length = 210
Score = 94.5 bits (235), Expect = 6e-24
Identities = 43/207 (20%), Positives = 76/207 (36%), Gaps = 15/207 (7%)
Query: 56 EEFYQLMNARRTVRFF-SDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKI 114
E+ QL+N R + + F S + I + A SPS +T+PW FV+V DKD+K +I
Sbjct: 7 EKRRQLLNERHSCKMFDSHYEFSSTELEEIAEIARLSPSSYNTQPWHFVMVTDKDLKKQI 66
Query: 115 RDIVESEERINYD-------KRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFK 167
E + + + E ++ F Q G +
Sbjct: 67 AAHSYFNEEMIKSASALMVVCSLRPSELLPHGHYMQNLYPES--YKVRVIPSFAQMLGVR 124
Query: 168 -EEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNE-KLA 225
++ Y +A G + + GL + + + +L+ N+ K+A
Sbjct: 125 FNHSMQRLESYILEQCYIAVGQICMGVSLMGLDSCIIGGFDP-LKVGEVLEERINKPKIA 183
Query: 226 LLLPIGYPALDCTVPNLKRKDIEDIIV 252
L+ +G + + RK D I
Sbjct: 184 CLIALGKRVAEASQK--SRKSKVDAIT 208
>1ywq_A Nitroreductase family protein; FMN, structu genomics, PSI, protein
structure initiative, midwest center structural
genomics, MCSG; HET: FMN; 2.30A {Bacillus cereus atcc
14579} SCOP: d.90.1.1
Length = 200
Score = 94.5 bits (235), Expect = 6e-24
Identities = 30/216 (13%), Positives = 72/216 (33%), Gaps = 36/216 (16%)
Query: 55 SEEFYQLMNARRTVR-FFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKD---- 109
+ + + RR++R ++A+ KE I ++KTA +P+ + + V++ D +
Sbjct: 5 TTNLKEAIVNRRSIRKVTKNDAITKERIEEVLKTALHAPTSFNMQSGRMVVLMDGEHEKF 64
Query: 110 ---MKAKIRDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGF 166
+K +R V +E +R+ + V+ F+
Sbjct: 65 WDIVKETLRARVPAENFEATVERL-----------------KGFHAGVGTVLFFEDQATV 107
Query: 167 KEEGKRKKHY------YHEMSVSLACGIML--AAIQYCGLVTLTSTPLNAGPALRTLLDR 218
++ + Y + ++ + + + G P+ ++ +
Sbjct: 108 EKMQENAPLYKDQFPFWSHQGNAMLQHTVWMLLSAEGIGASLQHYNPIVD-AEVKETWNI 166
Query: 219 PGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVEF 254
P L +P G P ED++ +
Sbjct: 167 PAEWSLVGQMPFGEPNEQPAER--TFLPTEDVVKFY 200
>1f5v_A Oxygen-insensitive NADPH nitroreductase; flavoprotein,
oxidoreduction, nitrocompound, oxidoreductase; HET: FMN;
1.70A {Escherichia coli} SCOP: d.90.1.1
Length = 240
Score = 94.3 bits (235), Expect = 2e-23
Identities = 33/203 (16%), Positives = 73/203 (35%), Gaps = 37/203 (18%)
Query: 57 EFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRD 116
+L+ R++R F+DE + + II +A + S + + + + + DK ++ ++
Sbjct: 3 PTIELICGHRSIRHFTDEPISEAQREAIINSARATSSSSFLQCSSIIRITDKALREELVT 62
Query: 117 IVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVV------FKQTYGFKEEG 170
+ + ++++ A V Q + G
Sbjct: 63 L--------------------------TGGQKHVAQAAEFWVFCADFNRHLQICPDAQLG 96
Query: 171 KRKKHYYHEMSVSLACGIMLAAIQYCGLVTL-TSTPLNAGPALRTLLDRPGNEKLALLLP 229
++ + ++ L A + GL + N A+ LL P + L
Sbjct: 97 LAEQLLLGVVDTAMMAQNALIAAESLGLGGVYIGGLRNNIEAVTKLLKLPQHVLPLFGLC 156
Query: 230 IGYPALDCTVPNLK-RKDIEDII 251
+G+PA + P+LK R ++
Sbjct: 157 LGWPADN---PDLKPRLPASILV 176
>3gbh_A NAD(P)H-flavin oxidoreductase; putative NAD(P)H:FMN oxidoreductase,
structural genomics, JO center for structural genomics;
HET: MSE FMN PGE; 2.00A {Staphylococcus epidermidis atcc
12228}
Length = 213
Score = 92.0 bits (229), Expect = 6e-23
Identities = 38/208 (18%), Positives = 78/208 (37%), Gaps = 14/208 (6%)
Query: 54 RSEEFYQLMNARRTVRFF-SDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKA 112
R +F +++N+R++V+ F + +P+E + II A +PS + +PW +V+ +MK
Sbjct: 7 RINDFNEVLNSRKSVKVFDENYKIPREEMDEIITKATKAPSSVNMQPWRIAVVQSDEMKE 66
Query: 113 KIRDIVESEERINYDKRM------GKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGF 166
K+++ R + + ++ L T + +
Sbjct: 67 KVKESFGFNSRQLTTSSAMLIIFGDLQNYEKAEQIYGDAVEQQLMTEDIKAQLLDWILPY 126
Query: 167 -KEEGKRKKHYYHEMSVSLACG-IMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNE-K 223
K + + SL +ML A + G T + + ++ +
Sbjct: 127 YKNLSREGMKDIVNIDSSLMAMQLMLTAKAH-GYDTNPIGGFDK-ENIADIIGYDSDRYV 184
Query: 224 LALLLPIGYPALDCTVPNLKRKDIEDII 251
L + IG A D + R I+D+
Sbjct: 185 PVLAIAIGKKAQD--AHDSVRLPIDDVR 210
>1nox_A NADH oxidase; flavoenzyme, flavoprotein FMN, oxidoreductase,
thermophIle; HET: FMN; 1.59A {Thermus thermophilus}
SCOP: d.90.1.1
Length = 205
Score = 91.6 bits (228), Expect = 9e-23
Identities = 37/228 (16%), Positives = 80/228 (35%), Gaps = 67/228 (29%)
Query: 57 EFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRD 116
+ RR++R + + VP+ ++ I++ A +PS + +PW V+V D K +R+
Sbjct: 9 DAKTAALKRRSIRRYRKDPVPEGLLREILEAALRAPSAWNLQPWRIVVVRDPATKRALRE 68
Query: 117 IVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVF---------------- 160
++ + ++ AP ++V++
Sbjct: 69 A--------------------------AFGQAHVEEAPVVLVLYADLEDALAHLDEVIHP 102
Query: 161 ------------KQTYGFKEEGKRKKHYYHEMSVSLACG-IMLAAIQYCGLVTLTSTPL- 206
F G+ + + + G ++L Y GL + P+
Sbjct: 103 GVQGERREAQKQAIQRAFAAMGQEARKAWASGQSYILLGYLLLLLEAY-GLGS---VPML 158
Query: 207 --NAGPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLK-RKDIEDII 251
+ +R +L P + L+ +GYPA + R +E ++
Sbjct: 159 GFDP-ERVRAILGLPSRAAIPALVALGYPAEE---GYPSHRLPLERVV 202
>1bkj_A NADPH-flavin oxidoreductase; luminescence, flavoprotein; HET: FMN;
1.80A {Vibrio harveyi} SCOP: d.90.1.1 PDB: 2bkj_A*
Length = 240
Score = 91.6 bits (228), Expect = 2e-22
Identities = 28/202 (13%), Positives = 63/202 (31%), Gaps = 35/202 (17%)
Query: 57 EFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRD 116
+ + A R++R F+ + E II+ + S + + + V V D + + ++
Sbjct: 3 NTIETILAHRSIRKFTAVPITDEQRQTIIQAGLAASSSSMLQVVSIVRVTDSEKRNELAQ 62
Query: 117 IVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHY 176
+ + Y+ +A +V +
Sbjct: 63 F--------------------------AGNQAYVESAAEFLVFCIDYQRHATINPDVQAD 96
Query: 177 YHE------MSVSLACGIMLAAIQYCGLVTL-TSTPLNAGPALRTLLDRPGNEKLALLLP 229
+ E + + L A + GL + N+ + LL P N + +
Sbjct: 97 FTELTLIGAVDSGIMAQNCLLAAESMGLGGVYIGGLRNSAAQVDELLGLPENSAVLFGMC 156
Query: 230 IGYPALDCTVPNLKRKDIEDII 251
+G+P + V R ++
Sbjct: 157 LGHPDQNPEVK--PRLPAHVVV 176
>2hay_A Putative NAD(P)H-flavin oxidoreductase; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
MSE FMN; 2.11A {Streptococcus pyogenes serotype M1}
Length = 224
Score = 91.1 bits (226), Expect = 2e-22
Identities = 38/214 (17%), Positives = 75/214 (35%), Gaps = 19/214 (8%)
Query: 55 SEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKI 114
+ Q ++ R VR + +E + E + I+ A SPS E W FV++++K +K +I
Sbjct: 9 HHQIQQALHFRTAVRVYKEEKISDEDLALILDAAWLSPSSIGLEGWRFVVLDNKPIKEEI 68
Query: 115 RDIVESEER------------INYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQ 162
+ + R + + + + L + L F++
Sbjct: 69 KPFAWGAQYQLETASHFILLIAEKHARYDSPAIKNSLLRRGIKEGDGLNSRLKLYESFQK 128
Query: 163 TYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLD----- 217
+ R + +A G M+ G+ T + + +L
Sbjct: 129 EDMDMADNPRALFDWTAKQTYIALGNMMMTAALLGIDTCPIEGFHY-DKVNHILAKHNVI 187
Query: 218 RPGNEKLALLLPIGYPALDCTVPNLKRKDIEDII 251
E +A +L +GY D RK E+++
Sbjct: 188 DLEKEGIASMLSLGYRLRDPKHAQ-VRKPKEEVM 220
>1zch_A Hypothetical oxidoreductase YCND; nitroreductase, NADH-oxidase;
HET: FMN; 1.85A {Bacillus subtilis} SCOP: d.90.1.1
Length = 255
Score = 91.7 bits (228), Expect = 2e-22
Identities = 40/208 (19%), Positives = 73/208 (35%), Gaps = 41/208 (19%)
Query: 57 EFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRD 116
E + + R++R ++DE V +E + II+ ++PS + + T + V+DK+ K KI +
Sbjct: 3 EVIKSLTDHRSIRSYTDEPVAQEQLDQIIEAVQSAPSSINGQQVTVITVQDKERKKKISE 62
Query: 117 IVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVF----KQTYGFKEEGKR 172
+ Q ++ AP ++ + ++
Sbjct: 63 L-------------------------AGGQP-WIDQAPVFLLFCADFNRAKIALEDLHDF 96
Query: 173 KKHYYHEMS--------VSLACGIMLAAIQYCGLVTL-TSTPLNAGPALRTLLDRPGNEK 223
K + + +A G AA + GL T+ L LL+ P
Sbjct: 97 KMEITNGLESVLVGAVDAGIALGTATAAAESLGLGTVPIGAVRGNPQELIELLELPKYVF 156
Query: 224 LALLLPIGYPALDCTVPNLKRKDIEDII 251
L IG+PA R E +
Sbjct: 157 PLSGLVIGHPADRSAKK--PRLPQEAVN 182
>3n2s_A NADPH-dependent nitro/flavin reductase; alpga-beta-alpha sandwich,
oxidoreductase; HET: FMN; 1.95A {Bacillus subtilis}
Length = 249
Score = 91.3 bits (227), Expect = 2e-22
Identities = 31/209 (14%), Positives = 71/209 (33%), Gaps = 43/209 (20%)
Query: 57 EFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRD 116
+ + R++R F+D+ + E I ++K+A + + ++ + ++ + V D + K ++
Sbjct: 3 NTIETILNHRSIRSFTDQLLTAEEIDTLVKSAQAASTSSYVQAYSIIGVSDPEKKRELSV 62
Query: 117 IVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHY 176
+ + + Y+ + V Y ++ + K +
Sbjct: 63 L--------------------------AGNQPYVEKNGHFFVFCADLYRHQQLAEEKGEH 96
Query: 177 YHE------------MSVSLACGIMLAAIQYCGLVTL-TSTPLNAGPALRTLLDRPGNEK 223
E + +LA M A + GL N + +L P +
Sbjct: 97 ISELLENTEMFMVSLIDAALAAQNMSIAAESMGLGICYIGGIRNELDKVTEVLQTPDHVL 156
Query: 224 LALLLPIGYPALDCTVPNLK-RKDIEDII 251
L +G+PA K R + +
Sbjct: 157 PLFGLAVGHPANL---SGKKPRLPKQAVY 182
>3eof_A Putative oxidoreductase; YP_213212.1, structural genomics, J center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: FMN; 1.99A {Bacteroides fragilis nctc 9343}
Length = 248
Score = 89.3 bits (222), Expect = 1e-21
Identities = 30/206 (14%), Positives = 65/206 (31%), Gaps = 43/206 (20%)
Query: 59 YQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIV 118
+ RRT+R + + + ++++++++T+ + + + ++ V+ D + K +
Sbjct: 3 MDTVKNRRTIRKYQQKDITPDLLNDLLETSFRASTMGGMQLYSVVVTRDAEKKEILSPA- 61
Query: 119 ESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVF----KQTYGFKEEGKRKK 174
+ + + AP ++ + +E
Sbjct: 62 -------------------------HFNQPMVKEAPVVLTFCADFRRFCKYCQERNAVPG 96
Query: 175 HYYHE------MSVSLACGIMLAAIQYCGL--VTLTSTPLNAGPALRTLLDRPGNEKLAL 226
+ M L + GL L +T N + L P
Sbjct: 97 YGNLMSFLNAAMDTLLVAQTFCTLAEEAGLGICYLGTTTYNP-QMIIDALHLPELVFPIT 155
Query: 227 LLPIGYPALDCTVPNLK-RKDIEDII 251
+ +GYPA P R IE II
Sbjct: 156 TVTVGYPAES---PKQVDRLPIEGII 178
>3k6h_A Nitroreductase family protein; APC5990, agrobacterium tumefaciens
ST structural genomics, PSI-2, protein structure
initiative; HET: FMN; 3.05A {Agrobacterium tumefaciens
str}
Length = 197
Score = 88.0 bits (218), Expect = 1e-21
Identities = 32/198 (16%), Positives = 59/198 (29%), Gaps = 19/198 (9%)
Query: 57 EFYQLMNARRTV--RFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKI 114
+ + RR+ S+ K I I++ A P PW FV+ ++
Sbjct: 10 KLLDYLRVRRSTPALQLSEPGPSKGEIEEILRLAVRVPDHGKLAPWRFVVYRGEERVRLS 69
Query: 115 RDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKK 174
+ N D + ++ R + + V+ +
Sbjct: 70 EAALRIALEKNPDLDLQQQEAERTRFTRAPV---------VIAVISTAK-----PHFKIP 115
Query: 175 HYYHEMSVSLACGIMLAAIQYCGLVTLTST-PLNAGPALRTLLDRPGNEKLALLLPIGYP 233
+ MS C ++ A G T L PA + EK+A + IG
Sbjct: 116 EWEQVMSAGAVCLNVIFAANASGFAANWLTEWLAFDPAFLAEIGVSAEEKVAGYIHIGST 175
Query: 234 ALDCTVPNLKRKDIEDII 251
R ++ D++
Sbjct: 176 --TFPPVERPRPELADVV 191
>1icr_A Oxygen-insensitive NAD(P)H nitroreductase; alpha-beta,
oxidoreductase; HET: FMN; 1.70A {Escherichia coli} SCOP:
d.90.1.1 PDB: 1ds7_A* 1icu_A* 1icv_A* 1idt_A* 1oo5_A*
1oo6_A* 1oon_A* 1ooq_A* 1yki_A* 1ylr_A* 1ylu_A* 3hzn_A*
1kqb_A* 1kqc_A* 1kqd_A* 1nec_A*
Length = 217
Score = 85.7 bits (212), Expect = 2e-20
Identities = 31/215 (14%), Positives = 67/215 (31%), Gaps = 18/215 (8%)
Query: 57 EFYQLMNARRTVR-FFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIR 115
+ + R + + F + + + E I SPS +++PW F++ ++ KA++
Sbjct: 2 DIISVALKRHSTKAFDASKKLTPEQAEQIKTLLQYSPSSTNSQPWHFIVASTEEGKARVA 61
Query: 116 DIVESEERINYDKRMG-----------KEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTY 164
N K + L+ + + P +
Sbjct: 62 KSAAGNYVFNERKMLDASHVVVFCAKTAMDDVWLKLVVDQEDADGRFATPEAKAANDKGR 121
Query: 165 GFKEEGKRKKHYYHE----MSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPG 220
F + RK + V L G L + GL + +A +
Sbjct: 122 KFFADMHRKDLHDDAEWMAKQVYLNVGNFLLGVAALGLDAVPIEGFDAAILDAEFGLKEK 181
Query: 221 NEKLALLLPIGYPALDCTVPNLK--RKDIEDIIVE 253
+++P+G+ +++ L R + E
Sbjct: 182 GYTSLVVVPVGHHSVEDFNATLPKSRLPQNITLTE 216
>1vfr_A NAD(P)H\:FMN oxidoreductase; bioluminescence; HET: FMN; 1.80A
{Aliivibrio fischeri} SCOP: d.90.1.1 PDB: 1v5y_A*
1v5z_A*
Length = 218
Score = 83.5 bits (206), Expect = 1e-19
Identities = 34/215 (15%), Positives = 67/215 (31%), Gaps = 19/215 (8%)
Query: 55 SEEFYQLMNARRTVRFF-SDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAK 113
+ + R T + + + V +E + +++ S S +++PW F+++E K +
Sbjct: 2 THPIIHDLENRYTSKKYDPSKKVSQEDLAVLLEALRLSASSINSQPWKFIVIESDAAKQR 61
Query: 114 IRDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVV-------------- 159
+ D + + N + + +Y V
Sbjct: 62 MHDSFANMHQFNQPHIKACSHVILFANKLSYTRDDYDVVLSKAVADKRITEEQKEAAFAS 121
Query: 160 FKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRP 219
FK +E K + LA G L + + + T ++ D
Sbjct: 122 FKFVELNCDENGEHKAWTKP-QAYLALGNALHTLARLNIDSTTMEGIDPELLSEIFADEL 180
Query: 220 GNEKLALLLPIGYPALDCTVPNLK---RKDIEDII 251
+ + L IGY RK ED+I
Sbjct: 181 KGYECHVALAIGYHHPSEDYNASLPKSRKAFEDVI 215
>3ge6_A Nitroreductase; structural GENO joint center for structural
genomics, JCSG, protein structu initiative, PSI-2,
oxidoreductase; HET: FMN; 1.85A {Exiguobacterium
sibiricum 255-15}
Length = 212
Score = 82.7 bits (205), Expect = 2e-19
Identities = 35/237 (14%), Positives = 75/237 (31%), Gaps = 70/237 (29%)
Query: 53 QRSEEFYQLMNARRTVR-FFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMK 111
Q + +F +++ RR++R + ++ + KE + I++ A +PS + +PW F++++ ++ K
Sbjct: 5 QTATDFMEIVKGRRSIRNYDTNVKISKEEMTQILEEATLAPSSVNMQPWRFLVIDSEEGK 64
Query: 112 AKIRDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGK 171
A + + + + + T+ ++ VF +
Sbjct: 65 ATLAPL-------------------------AKFNQVQVETSSAVIAVFGDMKAIDQLEN 99
Query: 172 RKKH---------------------YYHEM-----------SVSLACG-IMLAAIQYCGL 198
Y + L +ML A + G
Sbjct: 100 IYDTAVEKGLMPQEVRDRQVPAIQGMYENVPASALKDSILIDSGLVSMQLMLVARAH-G- 157
Query: 199 VTLTSTPLNAG---PALRTLLDRPGNE-KLALLLPIGYPALDCTVPNLKRKDIEDII 251
+ P+ G + + +LL IG R I DI
Sbjct: 158 --YDTNPI-GGYEKDQIAEAFGMEKDRYVPVMLLSIGKAVDAGYPS--VRLPINDIA 209
>2h0u_A NADPH-flavin oxidoreductase; structur genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics,
MCSG; HET: FMN; 1.90A {Helicobacter pylori}
Length = 217
Score = 82.8 bits (204), Expect = 2e-19
Identities = 25/213 (11%), Positives = 69/213 (32%), Gaps = 20/213 (9%)
Query: 56 EEFYQLMNARRTVRFF-SDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKI 114
E+ L + R + + + + ++ +++ +PS EPW ++++++ MK +
Sbjct: 4 EQVVALQHQRFAAKKYDPNRRISQKDWEALVEVGRLAPSSIGLEPWKMLLLKNERMKEDL 63
Query: 115 RDIVESEER---------INYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYG 165
+ + I ++ + ++ + +K T + K
Sbjct: 64 KPMAWGALFGLEGASHFVIYLARKGVTYDSDYVKKVMHEVKKRDYDTNSRFAQIIKNFQE 123
Query: 166 --FKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLD-----R 218
K +R + + M+ A G+ + + + L+
Sbjct: 124 NDMKLNSERSLFDWASKQTYIQMANMMMAAAMLGIDSCPIEGYDQ-EKVEAYLEEKGYLN 182
Query: 219 PGNEKLALLLPIGYPALDCTVPNLKRKDIEDII 251
++++ GY + + R E I
Sbjct: 183 TAEFGVSVMACFGYRNQE--ITPKTRWKTEVIY 213
>3hoi_A FMN-dependent nitroreductase BF3017; YP_212631.1, structural
genomics, joint center for S genomics, JCSG; HET: MSE
FMN FLC; 1.55A {Bacteroides fragilis nctc 9343}
Length = 193
Score = 57.9 bits (140), Expect = 2e-10
Identities = 24/192 (12%), Positives = 57/192 (29%), Gaps = 32/192 (16%)
Query: 57 EFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAG----------TSPSGAHTEPWTFVIVE 106
+ ++ R + R ++ +A+ + +++ A T+PS + + +V
Sbjct: 18 LLMKALSERHSTREYASKALSNTDLSDLLWAANGINRSSEGKRTAPSAMNRQDIDIYVVL 77
Query: 107 DKDMKAKIRDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGF 166
+ ++ D R Q ++ AP +V+
Sbjct: 78 PQGTY----------LYDAKGHKLNLISEGDHRSAVAGGQ-AFVNNAPVSLVL---VSDL 123
Query: 167 KEE----GKRKKHYYHEMSVSLACG-IMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGN 221
+ + M + I L L T+ ++ L+ L
Sbjct: 124 SKLGDAKSNHVQLMGA-MDAGIVSQNISLFC-SAARLATVPRASMDL-VRLKAALKLKDT 180
Query: 222 EKLALLLPIGYP 233
+ + P+GY
Sbjct: 181 QMPMMNHPVGYF 192
>2ifa_A Hypothetical protein SMU.260; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: FMN;
2.30A {Streptococcus mutans} SCOP: d.90.1.1
Length = 208
Score = 58.0 bits (140), Expect = 2e-10
Identities = 34/209 (16%), Positives = 61/209 (29%), Gaps = 24/209 (11%)
Query: 57 EFYQLMNARRTVRFFSDE-AVPKEIIHNIIKTAGT-SPSGAHTEPWTFVIVEDKDMKAKI 114
F L RR++ + K + +I+ A +PS +++ +++ +D +
Sbjct: 3 NFLDLQKQRRSIYALGKTVDLSKAELVALIQNAIKQAPSAFNSQTSRALVLFGQDSQDFW 62
Query: 115 RDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKK 174
I SE L +++F+ + +
Sbjct: 63 NKIAYSELEKVTPAEAFAGTKAKLESFA---------AGVGTILLFEDQAVVRNLEENFP 113
Query: 175 HYYHEMSVSL--ACGIMLAAI------QYCGLVTLTSTPLNAGPALRTLLDRPGNEKLAL 226
Y A GI L AI Q G+ PL + D P N K+
Sbjct: 114 LYAENFQPWSEQAHGIALYAIWLALAEQNIGMSVQHYNPLVD-AQVAEKYDLPTNWKMRA 172
Query: 227 LLPIGYPALDCTVPNLK-RKDIEDIIVEF 254
+P G K ++ F
Sbjct: 173 QIPFGSIEAP---AGEKEFMADQERFKVF 198
>3hj9_A Oxidoreductase; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2; HET:
MSE FMN; 2.00A {Ralstonia eutropha}
Length = 223
Score = 55.3 bits (133), Expect = 2e-09
Identities = 26/191 (13%), Positives = 56/191 (29%), Gaps = 25/191 (13%)
Query: 55 SEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTA----------GTSPSGAHTEPWTFVI 104
+ R++ R F + +P + + ++ A T+PS +
Sbjct: 39 GMPLMGTLWLRKSTREFDQQPLPLKQLSELLWAAAGVNRSLGGGRTAPSPYGETVIDVYV 98
Query: 105 VEDKDMKAKIRDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTY 164
+ + + DLR + + ++++ AP +V
Sbjct: 99 ALPAGLY----------RYDPVHHCLELKRAADLRSM--TGYQDFVGMAPLDLVFVANHG 146
Query: 165 GFKEEGKRKKHYYHEMSVSLACG-IMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEK 223
+E + + + + L GL + LN L + +E+
Sbjct: 147 RMQEMPPKLRETFSAAAAGAMAENAYLYC-ASAGLGAVVRGWLNR-RQLAEHMSLNEDEE 204
Query: 224 LALLLPIGYPA 234
L IG A
Sbjct: 205 PILSQTIGRAA 215
>2wqf_A Copper induced nitroreductase D; COPR regulated protein,
oxidoreductase; HET: FMN; 1.35A {Lactococcus lactis}
Length = 202
Score = 47.6 bits (113), Expect = 7e-07
Identities = 37/211 (17%), Positives = 63/211 (29%), Gaps = 24/211 (11%)
Query: 57 EFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGT-SPSGAHTEPWTFVIVEDKDMKAKIR 115
F + + RRT+ +E + IK A SP+ +++ +I+
Sbjct: 2 SFIKSLENRRTIYALGRNVQDEEKVIETIKEAVRFSPTAFNSQTGRLLILTGDAQDKLWD 61
Query: 116 DIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKH 175
+IV E + + + E D K K A ++ F+ K ++
Sbjct: 62 EIVAPELKAAMEAQGVPESAWDNTRAKLDGFK----AAFGTILFFEDQAVVKNLQEQFAL 117
Query: 176 YYHEMSV--SLACGIMLAAIQYCGLVTLTSTPLNA---------GPALRTLLDRPGNEKL 224
Y V GI+ + L L A A+ + P + KL
Sbjct: 118 YADNFPVWSEQGSGIISVNV----WTALAELGLGANLQHYNPLIDEAVAKEWNLPESWKL 173
Query: 225 ALLLPIGYPALDCTVPNLK-RKDIEDIIVEF 254
L G K D D +
Sbjct: 174 RGQLVFGSIEAP---AGEKTFMDDADRFIVA 201
>3eo7_A Putative nitroreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE FMN; 1.80A {Anabaena variabilis atcc
29413}
Length = 511
Score = 43.2 bits (101), Expect = 4e-05
Identities = 24/201 (11%), Positives = 56/201 (27%), Gaps = 32/201 (15%)
Query: 53 QRSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTA-----------GTSPSGAHTEPWT 101
+ + M+ RR+ R ++ E + + + ++ SP
Sbjct: 322 ENLSDLEITMHKRRSTRAYNGEELTFDELKALLDFTYQPQNYIDQSLDNSPDYFDLNLIE 381
Query: 102 FVIVEDKDMKAKIRDIVESEERI-NYD---KRMGKEWTTDLRPL--KTSWQKEYLTTAPY 155
I + + E Y + + + + R +E A
Sbjct: 382 TFIA--------VCGVQGLEAGCYYYAPKAQELRQIRFKNFRRELHFLCLGQELGRDAAA 433
Query: 156 LVVVFKQTYGFKEEGKRKKHYYHEMSVSLACG-IMLAAIQYCGLVTLTSTPLNAG--PAL 212
++ + + + Y M + LAA L + + +
Sbjct: 434 VIFHTSDLKSAIAQYGDRVYRYLHMDAGHLGQRLNLAA-IQLNLGV---SGIGGFFDDQV 489
Query: 213 RTLLDRPGNEKLALLLPIGYP 233
+L P +E + + +G P
Sbjct: 490 NEVLGIPNDEAVIYITTLGRP 510
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 6e-04
Identities = 28/167 (16%), Positives = 60/167 (35%), Gaps = 25/167 (14%)
Query: 19 ESETDEDD-EFAPALPEALDHISYDFVKKSVEDIRQR---SEEFYQLMNAR----RTVRF 70
+ ET E ++ L D +F K V+D+ + EE ++ ++ T+R
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 71 FSD-EAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKR 129
F + +E++ ++ P E + R +E +R+ D +
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK---TEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 130 MGKEWTTDLRP-----LKTSWQKEYLTTAPYLVVVFKQTYGFKEEGK 171
+ ++ R L+ + + L A +++ G GK
Sbjct: 125 VFAKYNVS-RLQPYLKLRQALLE--LRPAKNVLI-----DGVLGSGK 163
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 7e-04
Identities = 49/350 (14%), Positives = 92/350 (26%), Gaps = 149/350 (42%)
Query: 26 DEFAPALPEALDHISYD---------------FVKKSVEDIRQRSEEFYQLMNARRTVRF 70
++F LPE + + D +V VE + +F Q++N +
Sbjct: 35 EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEP--SKVGQFDQVLNL--CLTE 90
Query: 71 FSDEAVPKEIIH------------------NIIKT------AGTSPSGAHTEPWTFVIVE 106
F + + IH +IK P + F V
Sbjct: 91 FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG 150
Query: 107 DKDMKAKI-----------------RDIVE--------------------SEERINYDKR 129
+ A++ RD+ + ++ +K
Sbjct: 151 EG--NAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 130 MGK-----EW--TTDLRPLKTSWQKEYLTTAP-------------YLVVVFKQTYGFKEE 169
+ EW P K+YL + P Y+V K
Sbjct: 209 FTQGLNILEWLENPSNTP-----DKDYLLSIPISCPLIGVIQLAHYVVT-------AKLL 256
Query: 170 GKRKKHYYHEMSVSLAC--GIMLA------------------AIQ---YCGLVTLTSTPL 206
G + + G++ A AI + G+ + P
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 207 NAGPALRTLLDRPGNEKLALLLPIGYPA--LDCTVPNLKRKDIEDIIVEF 254
+ P NE G P+ L ++ NL ++ ++D + +
Sbjct: 317 TSLPPSILEDSLENNE--------GVPSPML--SISNLTQEQVQDYVNKT 356
Score = 33.9 bits (77), Expect = 0.055
Identities = 39/181 (21%), Positives = 53/181 (29%), Gaps = 87/181 (48%)
Query: 130 MGKEWTTDLRPLKTS------WQK--EYLTTAPYLVVVFKQTYGFK-------------- 167
MG DL KTS W + + FK TYGF
Sbjct: 1631 MGM----DLY--KTSKAAQDVWNRADNH----------FKDTYGFSILDIVINNPVNLTI 1674
Query: 168 ----EEGKRKKHYYHEM-----------SVSLACGIMLAAIQYC-----GLVTLTSTPLN 207
E+GKR + Y M + + I + Y GL++ T
Sbjct: 1675 HFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ---F 1731
Query: 208 AGPAL--------RTLLDR---PGNEKLA---LLLPIG-YPALDCT--VPNLKRKDIEDI 250
PAL L + P + A L G Y AL V + IE +
Sbjct: 1732 TQPALTLMEKAAFEDLKSKGLIPADATFAGHSL----GEYAALASLADV--M---SIESL 1782
Query: 251 I 251
+
Sbjct: 1783 V 1783
>1vkw_A Putative nitroreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI, oxidoreductase; 2.00A {Thermotoga maritima} SCOP:
d.90.1.2
Length = 218
Score = 34.7 bits (79), Expect = 0.016
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 57 EFYQLMNARRTVRFFSDEAVPKEII 81
++ + R +VR F + +P+ +
Sbjct: 14 NIFEAIENRHSVRDFLERKMPERVK 38
Score = 27.0 bits (59), Expect = 6.1
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 78 KEIIHNIIKTAGTSPSGAHTEPWTFVIVEDK 108
I I++ +PS + +PW +
Sbjct: 142 PPEIVKIVEMTILAPSALNRQPWKIKYTGGE 172
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 30.4 bits (68), Expect = 0.64
Identities = 32/198 (16%), Positives = 62/198 (31%), Gaps = 7/198 (3%)
Query: 5 MENNTKTPEGPSNAE----SETDEDDEFAPALPEALDHISYDFVKKSVEDIRQRSEEFYQ 60
+E + G S+A D + P L+ + ++ EE+ Q
Sbjct: 878 IEKQSLDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESG--SEILGDLKLQVLLDEEYKQ 935
Query: 61 LMNARRTVR-FFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVE 119
L+ R+ +R F D + NI + + H + + KD+ ++D+ E
Sbjct: 936 LVKDRKFLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQE 995
Query: 120 SEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHE 179
+ + + + D L + L T L F + +
Sbjct: 996 NLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLR 1055
Query: 180 MSVSLACGIMLAAIQYCG 197
V + + A Q G
Sbjct: 1056 SVVHPGEMVGVLAAQSIG 1073
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism,
pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A
{Trypanosoma cruzi} SCOP: c.67.1.1
Length = 416
Score = 29.9 bits (68), Expect = 0.90
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 31 ALPEALDHISYDFVKKSVEDIRQRSEEFYQLMNA 64
AL EAL + + + + V I + + Y +
Sbjct: 298 ALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGE 331
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Geobacter sulfurreducens
pca}
Length = 253
Score = 28.1 bits (63), Expect = 2.6
Identities = 10/69 (14%), Positives = 26/69 (37%), Gaps = 10/69 (14%)
Query: 47 SVEDIRQRSEEFYQLMNARRTVRFFSDEAVP---KEIIHNIIKTAGTSPSGAHTEPWTFV 103
S+E ++ +F + + + +D V ++ ++ A + F
Sbjct: 15 SIEQEKELGNKFAVEI--EKQQQPVNDPEVQRYVDKVGKRLLSGARAVEF-----DYVFK 67
Query: 104 IVEDKDMKA 112
+V+D + A
Sbjct: 68 VVKDDSVNA 76
>2i8d_A Uncharacterized conserved protein of COG5646; ZP_00384875.1,
structural genomics, PSI-2, protein structure
initiative; HET: MSE UNL; 1.69A {Lactobacillus casei}
SCOP: d.198.4.1
Length = 123
Score = 26.8 bits (59), Expect = 3.4
Identities = 6/50 (12%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 37 DHISYDFVKKSVEDIRQRSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIK 86
H++ +++ + ++ + + +RF + + +++IH++I
Sbjct: 61 KHLAVAIEPQTMTRFIPQIDKAGY--DHSQIIRFPWHKPLDEQLIHDLIA 108
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural
genomics consortium, SGC, protein binding; 1.80A {Homo
sapiens}
Length = 132
Score = 26.9 bits (59), Expect = 3.6
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 26 DEFAPALPEALDHISYDFVKKSVEDI 51
+ FA LPEA + V KSVE I
Sbjct: 81 ESFADVLPEAAALVKDPSVSKSVERI 106
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics,
structural genomics consortium, disease mutation,
phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens}
PDB: 3pdx_A*
Length = 427
Score = 27.6 bits (62), Expect = 3.9
Identities = 6/34 (17%), Positives = 14/34 (41%)
Query: 31 ALPEALDHISYDFVKKSVEDIRQRSEEFYQLMNA 64
AL L +F ++ ++ ++ Y + A
Sbjct: 309 ALKSILCRTPGEFYHNTLSFLKSNADLCYGALAA 342
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 6.0
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 22/45 (48%)
Query: 5 MENNTKTPEGPSNAESETDEDDEFAPALPEALDHISYDFVKKSVE 49
++ + K +S APAL +K ++E
Sbjct: 25 LQASLK-LYAD---DS--------APALA----------IKATME 47
>3fvy_A Dipeptidyl-peptidase 3; SGC, DPP3, alternative splicing,
aminopeptidase, cytoplasm, hydrolase, metal-binding,
metalloprotease, phosphoprotein; 1.90A {Homo sapiens}
PDB: 3t6b_A 3t6j_A
Length = 728
Score = 27.1 bits (59), Expect = 6.9
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 11/67 (16%)
Query: 92 PSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLT 151
P G+ E FV V +K M AK +V S E P +++K+
Sbjct: 323 PFGSRGEFEGFVAVVNKAMSAKFERLVAS-----------AEQLLKELPWPPTFEKDKFL 371
Query: 152 TAPYLVV 158
T + +
Sbjct: 372 TPDFTSL 378
>3ld2_A SMU.2055, putative acetyltransferase; HET: COA; 2.50A
{Streptococcus mutans}
Length = 197
Score = 26.3 bits (58), Expect = 8.9
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 164 YGFKEEGKRKKHYY 177
GF E + K ++
Sbjct: 163 LGFDLEARLTKQFF 176
>3klk_A Glucansucrase; native form, open conformation, multidomain protein,
glycosyltransferase, transferase; 1.65A {Lactobacillus
reuteri} PDB: 3kll_A* 3hz3_A*
Length = 1039
Score = 27.0 bits (59), Expect = 8.9
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 131 GKEWT----TDLRPLKTSWQKEYLTTAPYL 156
G WT TD+RP+ W +T A YL
Sbjct: 94 GTTWTDSKETDMRPILMVWWPNTVTQAYYL 123
>2kl4_A BH2032 protein; NB7804A, structural genomics, PSI-2, protein
structure initiative, joint center for structural
genomics, JCSG; NMR {Bacillus halodurans}
Length = 118
Score = 25.8 bits (56), Expect = 9.5
Identities = 6/50 (12%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 37 DHISYDFVKKSVEDIRQRSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIK 86
H+S + + + + R ++ V E++ +I+
Sbjct: 63 HHLSVSPEEIGISQFADAIAQAGYSAT-KGLFRIPWNDPVHYELLKQMIE 111
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.394
Gapped
Lambda K H
0.267 0.0571 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,024,963
Number of extensions: 241451
Number of successful extensions: 589
Number of sequences better than 10.0: 1
Number of HSP's gapped: 525
Number of HSP's successfully gapped: 77
Length of query: 254
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 163
Effective length of database: 4,160,982
Effective search space: 678240066
Effective search space used: 678240066
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.7 bits)