RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy144
(254 letters)
>d2ifaa1 d.90.1.1 (A:2-200) Hypothetical protein Smu.260
{Streptococcus mutans [TaxId: 1309]}
Length = 199
Score = 104 bits (261), Expect = 2e-28
Identities = 26/200 (13%), Positives = 58/200 (29%), Gaps = 8/200 (4%)
Query: 58 FYQLMNARRTVRFFSDEA-VPKEIIHNIIKTAGT-SPSGAHTEPWTFVIVEDKDMKAKIR 115
F L RR++ + K + +I+ A +PS +++ +++ +D +
Sbjct: 3 FLDLQKQRRSIYALGKTVDLSKAELVALIQNAIKQAPSAFNSQTSRALVLFGQDSQDFWN 62
Query: 116 DIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKH 175
I SE L L +V ++ +
Sbjct: 63 KIAYSELEKVTPAEAFAGTKAKLESFAAGVGTILLFEDQAVVRNLEENFPL---YAENFQ 119
Query: 176 YYHEMSVSLACGIMLAAIQYCGLVT-LTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPA 234
+ E + +A + A+ + + + D P N K+ +P G
Sbjct: 120 PWSEQAHGIALYAIWLALAEQNIGMSVQHYNPLVDAQVAEKYDLPTNWKMRAQIPFGSIE 179
Query: 235 LDCTVPNLKRKDIEDIIVEF 254
+ ++ F
Sbjct: 180 APAGEK--EFMADQERFKVF 197
>d1ywqa1 d.90.1.1 (A:2-200) Hypothetical oxidoreductase BC1844
{Bacillus cereus [TaxId: 1396]}
Length = 199
Score = 96.4 bits (239), Expect = 3e-25
Identities = 25/202 (12%), Positives = 64/202 (31%), Gaps = 8/202 (3%)
Query: 55 SEEFYQLMNARRTVR-FFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAK 113
+ + + RR++R ++A+ KE I ++KTA +P+ + + V++ D + +
Sbjct: 4 TTNLKEAIVNRRSIRKVTKNDAITKERIEEVLKTALHAPTSFNMQSGRMVVLMDGEHEKF 63
Query: 114 IRDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRK 173
+ E+ + L+ V ++ K +
Sbjct: 64 WDIVKETLRARVPAENFEA-TVERLKGFHAGVGTVLFFEDQATVEKMQENAPL---YKDQ 119
Query: 174 KHYYHEMSVSLACGIMLAAIQYCGLVTLTSTP-LNAGPALRTLLDRPGNEKLALLLPIGY 232
++ ++ + + G+ ++ + P L +P G
Sbjct: 120 FPFWSHQGNAMLQHTVWMLLSAEGIGASLQHYNPIVDAEVKETWNIPAEWSLVGQMPFGE 179
Query: 233 PALDCTVPNLKRKDIEDIIVEF 254
P ED++ +
Sbjct: 180 PNEQPAER--TFLPTEDVVKFY 199
>d1ykia1 d.90.1.1 (A:2-217) Oxygen-insensitive NAD(P)H
nitroreductase {Escherichia coli, minor form, NfnB
[TaxId: 562]}
Length = 216
Score = 94.3 bits (233), Expect = 3e-24
Identities = 28/215 (13%), Positives = 66/215 (30%), Gaps = 18/215 (8%)
Query: 57 EFYQLMNARRTVR-FFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIR 115
+ + R + + F + + + E I SPS +++PW F++ ++ KA++
Sbjct: 1 DIISVALKRHSTKAFDASKKLTPEQAEQIKTLLQYSPSSTNSQPWHFIVASTEEGKARVA 60
Query: 116 DIVESEERIN--------------YDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFK 161
N M W + + + + A +
Sbjct: 61 KSAAGNYVFNERKMLDASHVVVFCAKTAMDDVWLKLVVDQEDADGRFATPEAKAANDKGR 120
Query: 162 QTYG-FKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPG 220
+ + + + V L G L + GL + +A +
Sbjct: 121 KFFADMHRKDLHDDAEWMAKQVYLNVGNFLLGVAALGLDAVPIEGFDAAILDAEFGLKEK 180
Query: 221 NEKLALLLPIGYPALDCTVPNLK--RKDIEDIIVE 253
+++P+G+ +++ L R + E
Sbjct: 181 GYTSLVVVPVGHHSVEDFNATLPKSRLPQNITLTE 215
>d1noxa_ d.90.1.1 (A:) NADH oxidase {Thermus thermophilus, HB8
[TaxId: 274]}
Length = 200
Score = 92.7 bits (229), Expect = 1e-23
Identities = 33/198 (16%), Positives = 73/198 (36%), Gaps = 5/198 (2%)
Query: 57 EFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRD 116
+ RR++R + + VP+ ++ I++ A +PS + +PW V+V D K +R+
Sbjct: 4 DAKTAALKRRSIRRYRKDPVPEGLLREILEAALRAPSAWNLQPWRIVVVRDPATKRALRE 63
Query: 117 IVESEERINYDKRMG--KEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKK 174
+ + + D + F G+ +
Sbjct: 64 AAFGQAHVEEAPVVLVLYADLEDALAHLDEVIHPGVQGERREAQKQAIQRAFAAMGQEAR 123
Query: 175 HYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPA 234
+ + G +L ++ GL ++ + +R +L P + L+ +GYPA
Sbjct: 124 KAWASGQSYILLGYLLLLLEAYGLGSVPMLGFDP-ERVRAILGLPSRAAIPALVALGYPA 182
Query: 235 LDCTVPNLKRKDIEDIIV 252
+ R +E +++
Sbjct: 183 EEGYPS--HRLPLERVVL 198
>d1vfra_ d.90.1.1 (A:) Flavin reductase P (NADPH:FMN oxidoreductase)
{Vibrio fischeri [TaxId: 668]}
Length = 217
Score = 91.2 bits (225), Expect = 6e-23
Identities = 30/210 (14%), Positives = 63/210 (30%), Gaps = 19/210 (9%)
Query: 60 QLMNARRTVR-FFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIV 118
+ R T + + + V +E + +++ S S +++PW F+++E K ++ D
Sbjct: 6 HDLENRYTSKKYDPSKKVSQEDLAVLLEALRLSASSINSQPWKFIVIESDAAKQRMHDSF 65
Query: 119 ESEERINYDKRMG-----------KEWTTDLRPLKTSWQKEYLTTAP---YLVVVFKQTY 164
+ + N D + + + T FK
Sbjct: 66 ANMHQFNQPHIKACSHVILFANKLSYTRDDYDVVLSKAVADKRITEEQKEAAFASFKFVE 125
Query: 165 GFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEKL 224
+E K + + + + + T ++ D +
Sbjct: 126 LNCDENGEHKAWTKPQAYLALGNALHTL-ARLNIDSTTMEGIDPELLSEIFADELKGYEC 184
Query: 225 ALLLPIGYPALDCTVPNLK---RKDIEDII 251
+ L IGY RK ED+I
Sbjct: 185 HVALAIGYHHPSEDYNASLPKSRKAFEDVI 214
>d2b67a1 d.90.1.1 (A:1-201) Hypothetical oxidoreductase SP0622
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 201
Score = 87.4 bits (215), Expect = 1e-21
Identities = 31/200 (15%), Positives = 76/200 (38%), Gaps = 8/200 (4%)
Query: 57 EFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRD 116
+F +L R + F+D+ V + + I+ A +PS +++PW FV+V +K+ +
Sbjct: 2 KFLELNKKRHATKHFTDKLVDPKDVRTAIEIATLAPSAHNSQPWKFVVVREKNAELAKLA 61
Query: 117 IVESEERINYDKRM-----GKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGK 171
+ E+++ + R + + + F +
Sbjct: 62 YGSNFEQVSSAPVTIALFTDTDLAKRARKIARVGGANNFSEEQLQYFMKNLPAEFARYSE 121
Query: 172 RKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEKLALLLPIG 231
++ Y ++ L ++ A+ G+ + + + +L+ + LL+ +G
Sbjct: 122 QQVSDYLALNAGLVAMNLVLALTDQGIGSNIILGFDK-SKVNEVLEIEDRFRPELLITVG 180
Query: 232 YPALDCTVPNLKRKDIEDII 251
Y + R +++II
Sbjct: 181 YTDEK--LEPSYRLPVDEII 198
>d1bkja_ d.90.1.1 (A:) Flavin reductase P (NADPH:FMN oxidoreductase)
{Vibrio harveyi [TaxId: 669]}
Length = 239
Score = 87.5 bits (216), Expect = 2e-21
Identities = 29/204 (14%), Positives = 63/204 (30%), Gaps = 35/204 (17%)
Query: 57 EFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRD 116
+ + A R++R F+ + E II+ + S + + + V V D + + ++
Sbjct: 2 NTIETILAHRSIRKFTAVPITDEQRQTIIQAGLAASSSSMLQVVSIVRVTDSEKRNELAQ 61
Query: 117 IVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHY 176
+ + Y+ +A +V +
Sbjct: 62 F--------------------------AGNQAYVESAAEFLVFCIDYQRHATINPDVQAD 95
Query: 177 YHE------MSVSLACGIMLAAIQYCGLVTLTSTPLNAGP-ALRTLLDRPGNEKLALLLP 229
+ E + + L A + GL + L + LL P N + +
Sbjct: 96 FTELTLIGAVDSGIMAQNCLLAAESMGLGGVYIGGLRNSAAQVDELLGLPENSAVLFGMC 155
Query: 230 IGYPALDCTVPNLKRKDIEDIIVE 253
+G+P + V R ++ E
Sbjct: 156 LGHPDQNPEVKP--RLPAHVVVHE 177
>d1zcha1 d.90.1.1 (A:1-249) Hypothetical oxidoreductase YcnD
{Bacillus subtilis [TaxId: 1423]}
Length = 249
Score = 86.0 bits (212), Expect = 8e-21
Identities = 39/196 (19%), Positives = 73/196 (37%), Gaps = 17/196 (8%)
Query: 57 EFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRD 116
E + + R++R ++DE V +E + II+ ++PS + + T + V+DK+ K KI +
Sbjct: 3 EVIKSLTDHRSIRSYTDEPVAQEQLDQIIEAVQSAPSSINGQQVTVITVQDKERKKKISE 62
Query: 117 IVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHY 176
+ + + + D K + + + + +
Sbjct: 63 LAG-GQPWIDQAPVFLLFCADFNRAKIALED-------------LHDFKMEITNGLESVL 108
Query: 177 YHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPA-LRTLLDRPGNEKLALLLPIGYPAL 235
+ +A G AA + GL T+ + P L LL+ P L IG+PA
Sbjct: 109 VGAVDAGIALGTATAAAESLGLGTVPIGAVRGNPQELIELLELPKYVFPLSGLVIGHPAD 168
Query: 236 DCTVPNLKRKDIEDII 251
R E +
Sbjct: 169 RSAKKP--RLPQEAVN 182
>d1f5va_ d.90.1.1 (A:) Oxygen-insensitive NAD(P)H nitroreductase
{Escherichia coli, major form, NfsA [TaxId: 562]}
Length = 240
Score = 85.2 bits (210), Expect = 1e-20
Identities = 30/204 (14%), Positives = 68/204 (33%), Gaps = 35/204 (17%)
Query: 57 EFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRD 116
+L+ R++R F+DE + + II +A + S + + + + + DK ++ ++
Sbjct: 3 PTIELICGHRSIRHFTDEPISEAQREAIINSARATSSSSFLQCSSIIRITDKALREELVT 62
Query: 117 IVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHY 176
+ + ++++ A V + +
Sbjct: 63 L--------------------------TGGQKHVAQAAEFWVFCADFNRHLQICPDAQLG 96
Query: 177 YHE------MSVSLACGIMLAAIQYCGLVT-LTSTPLNAGPALRTLLDRPGNEKLALLLP 229
E + ++ L A + GL N A+ LL P + L
Sbjct: 97 LAEQLLLGVVDTAMMAQNALIAAESLGLGGVYIGGLRNNIEAVTKLLKLPQHVLPLFGLC 156
Query: 230 IGYPALDCTVPNLKRKDIEDIIVE 253
+G+PA + + R ++ E
Sbjct: 157 LGWPADNPDLKP--RLPASILVHE 178
>d2frea1 d.90.1.1 (A:1-200) NAD(P)H-flavin oxidoreductase Atu0013
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 200
Score = 75.0 bits (183), Expect = 4e-17
Identities = 38/213 (17%), Positives = 66/213 (30%), Gaps = 32/213 (15%)
Query: 49 EDIRQRSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDK 108
+ RQ L R + R F +PKE + I+ A +PS ++ +PW FV
Sbjct: 4 SNNRQSEYPVDPLFLDRWSPRAFDGSPMPKEHLLTILDAAHWAPSASNHQPWRFVYAHKD 63
Query: 109 DMKAKIRDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKE 168
+ + E +++ A L+ V + +
Sbjct: 64 SEDWPLFVELLME-----------------------GNQKWAKNASVLLFVISRDHTISH 100
Query: 169 EGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEKLALLL 228
EG++K H A + G + + LD P K+ +
Sbjct: 101 EGEKKPSATHSFDAGAAWFSLAMQAHLLGYHAHGMGGIF-KDRIVEKLDIPDGFKVEAGV 159
Query: 229 PIGYPALDCTVPNL--------KRKDIEDIIVE 253
IG +P+ KR + D+ E
Sbjct: 160 AIGTLTDKSILPDDLAEREVPSKRVPLADVAFE 192
>d1vkwa_ d.90.1.2 (A:) Putative nitroreductase TM1586 {Thermotoga
maritima [TaxId: 2336]}
Length = 217
Score = 60.6 bits (147), Expect = 9e-12
Identities = 16/197 (8%), Positives = 42/197 (21%), Gaps = 78/197 (39%)
Query: 57 EFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRD 116
++ + R +VR F + +P+ + +I +
Sbjct: 13 NIFEAIENRHSVRDFLERKMPERVKDDIENLLVKFITKKLDWKINLS------------- 59
Query: 117 IVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHY 176
+ P + ++
Sbjct: 60 -----------------------------------SFPSYIYAK---------AEKHFDE 75
Query: 177 YHEMSVSLACGIMLAAIQYCGLVT--LTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPA 234
+ ++ + G T + +P + + ++ GYP
Sbjct: 76 L--VEYGFQGEQIVLFLTAQGFGTCWMARSP---------------HPDVPYIIVFGYPR 118
Query: 235 LDCTVPNLKRKDIEDII 251
KR+ I +
Sbjct: 119 TRNFTR--KRRPITSFL 133
>d1k3ka_ f.1.4.1 (A:) Bcl-2 homolog {Kaposi's sarcoma-associated
herpesvirus [TaxId: 37296]}
Length = 146
Score = 26.3 bits (58), Expect = 2.2
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 32 LPEALDHISYDFVKKSVEDIRQRSEEFYQLMNAR 65
PE L H +K + + + E ++ M A
Sbjct: 24 EPEYLYHPLLSPIKLYITGLMRDKESLFEAMLAN 57
>d2ae6a1 d.108.1.1 (A:1-161) Putative acetyltransferase EF0244
{Enterococcus faecalis [TaxId: 1351]}
Length = 161
Score = 25.8 bits (55), Expect = 3.6
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 160 FKQTYGFKEEGKRKKHYYHE 179
F + +GF +E K+ +Y
Sbjct: 129 FYEKHGFVQEAHFKEEFYIN 148
>d2oc6a1 d.198.4.1 (A:1-123) Uncharacterized protein YdhG {Bacillus
subtilis [TaxId: 1423]}
Length = 123
Score = 24.9 bits (54), Expect = 7.1
Identities = 3/24 (12%), Positives = 10/24 (41%)
Query: 65 RRTVRFFSDEAVPKEIIHNIIKTA 88
+ +R + V ++ +I+
Sbjct: 87 EQLIRIPWNGPVDYTLLEKMIEFN 110
>d2ge3a1 d.108.1.1 (A:6-169) Probable acetyltransferase Atu2290
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 164
Score = 25.0 bits (53), Expect = 8.0
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 160 FKQTYGFKEEGKRKKHYYHE 179
+ GF EG+ + +
Sbjct: 131 LYEKIGFAHEGRARDAVSID 150
>d1yr0a1 d.108.1.1 (A:4-166) Phosphinothricin acetyltransferase
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 163
Score = 25.1 bits (53), Expect = 8.1
Identities = 11/88 (12%), Positives = 22/88 (25%), Gaps = 4/88 (4%)
Query: 94 GAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTA 153
G ++ D R+ + +GK L L A
Sbjct: 61 GKVAGYASYGDWRAFDGYRHTREHSVYVHKDARGHGIGKRLMQALIDHAGGNDVHVLIAA 120
Query: 154 PYL----VVVFKQTYGFKEEGKRKKHYY 177
+ ++ GF+ G+ +
Sbjct: 121 IEAENTASIRLHESLGFRVVGRFSEVGT 148
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.394
Gapped
Lambda K H
0.267 0.0587 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 984,709
Number of extensions: 46065
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 23
Length of query: 254
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 171
Effective length of database: 1,268,006
Effective search space: 216829026
Effective search space used: 216829026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.1 bits)