Query psy1440
Match_columns 283
No_of_seqs 182 out of 733
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 18:54:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1440.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1440hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qfe_A Calpain-7; C2-like doma 99.9 9.6E-26 3.3E-30 182.7 12.8 121 141-274 25-147 (148)
2 1qxp_A MU-like calpain; M-calp 99.8 2.3E-19 7.9E-24 183.3 13.5 135 142-279 360-518 (900)
3 3bow_A Calpain-2 catalytic sub 99.8 1.3E-19 4.4E-24 180.9 8.6 135 142-279 360-517 (714)
4 1qxp_A MU-like calpain; M-calp 99.3 5.9E-12 2E-16 128.6 11.7 137 2-141 329-512 (900)
5 2qfe_A Calpain-7; C2-like doma 99.3 1E-11 3.5E-16 100.1 10.4 120 9-141 25-146 (148)
6 3bow_A Calpain-2 catalytic sub 99.1 5.8E-11 2E-15 118.5 7.2 136 2-140 329-510 (714)
7 3sg6_A Gcamp2, myosin light ch 93.5 0.013 4.6E-07 54.9 -0.0 44 219-271 244-287 (450)
8 1nqj_A Class 1 collagenase; be 75.0 11 0.00038 28.3 7.1 78 164-264 41-118 (119)
9 3jqw_A COLH protein, collagena 70.4 30 0.001 25.9 8.6 81 163-266 38-118 (121)
10 3jqw_A COLH protein, collagena 68.4 35 0.0012 25.5 8.9 77 31-131 38-115 (121)
11 3gf8_A Putative polysaccharide 52.5 12 0.00042 32.6 4.1 47 195-250 36-83 (296)
12 4g9s_B Inhibitor of G-type lys 46.9 10 0.00035 27.8 2.3 25 240-264 81-109 (111)
13 3gf8_A Putative polysaccharide 38.1 14 0.00048 32.2 2.1 53 59-119 32-84 (296)
14 1nqj_A Class 1 collagenase; be 33.5 1.5E+02 0.005 22.0 10.2 77 32-131 41-117 (119)
15 3pay_A Putative adhesin; struc 32.4 40 0.0014 29.6 4.1 48 195-250 35-83 (314)
16 3od9_A Putative exported prote 31.3 64 0.0022 24.5 4.4 28 239-267 11-40 (135)
17 3pay_A Putative adhesin; struc 28.6 38 0.0013 29.7 3.3 54 58-120 30-85 (314)
18 2dmb_A Filamin-B; beta-sandwic 24.8 1.5E+02 0.0052 21.8 5.7 45 231-277 70-115 (124)
19 1r1p_A GRB2-related adaptor pr 20.2 1.7E+02 0.0058 20.4 5.0 31 240-273 29-59 (100)
No 1
>2qfe_A Calpain-7; C2-like domain, hydrolase, nuclear protein, protease, thiol protease; 1.45A {Homo sapiens}
Probab=99.93 E-value=9.6e-26 Score=182.73 Aligned_cols=121 Identities=16% Similarity=0.121 Sum_probs=90.3
Q ss_pred cccceeeeCCC--CCCCCCCCCCCCCeEEEEEcCCCceEEEeeeccccccccccCCceEEEEEEEEeCCceeecCCCCCC
Q psy1440 141 KRPQASWSAGQ--GPIKDVYNIGENPQFRLEVGGGVGAVWILLTRHITQLEDFKQNREYITVLVYKNEGKRVYYPYDPPP 218 (283)
Q Consensus 141 ~~~~G~W~~~~--Gg~~~~~tf~~NPQy~l~v~~~~~~v~i~L~~~~~~~~~~~i~~~~i~~~v~~~~g~rv~~~~~~~~ 218 (283)
.+++|+|++.+ ||.++.+|||+||||.|+|.+ +|+|+|.|.. .+.+ .||++||+++..+......-..
T Consensus 25 ~~~~G~W~g~tAGGc~n~~~tf~~NPQy~l~l~~-~~~v~i~L~~----~~~~-----~IGf~v~~v~~~~~~l~~~f~~ 94 (148)
T 2qfe_A 25 KRINGKWSGQSAGGCGNFQETHKNNPIYQFHIEK-TGPLLIELRG----PRQY-----SVGFEVVTVSTLGDPGPHGFLR 94 (148)
T ss_dssp EEEEEEECGGGCCCCTTCTTTGGGSCCEEEEESS-CEEEEEEEEC----CTTS-----EEEEEEEEEECCSCCCTTCCSE
T ss_pred EEEcCEECCCccCCCccccccccCCcEEEEEEcC-CccEEEEecC----CCcc-----ccceEEEEECCCCCccccceee
Confidence 36799996555 555555799999999999995 7899999943 2233 4667799875433222211112
Q ss_pred cccCccccCcceEEEEEEecCCCccEEEEeeccCCCCcccEEEEEEeCCCceeeec
Q psy1440 219 YLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKI 274 (283)
Q Consensus 219 ~~sg~y~~~~~~~~~~~l~~l~~G~Y~vVpST~~p~~~g~F~L~v~s~~~~~l~~i 274 (283)
..++.|.+.+++..++. |+||.|+||||||+|+++|+|.|||||+.++.+++|
T Consensus 95 ~~s~~~~~~~~v~~~~~---L~pG~YvIVPSTf~P~~eg~F~LrVfs~~~~~l~~l 147 (148)
T 2qfe_A 95 KSSGDYRCGFCYLELEN---IPSGIFNIIPSTFLPKQEGPFFLDFNSIIPIKITQL 147 (148)
T ss_dssp EECCSCEESEEEEEEEE---ECSEEEEEEEEESSTTCCEEEEEEEEESSCCEEEEC
T ss_pred eCCceeccCceEEEEEE---cCCCCEEEEeccCCCCCccceEEEEEeCCCCeeEeC
Confidence 46788866566555554 599999999999999999999999999999999987
No 2
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Probab=99.80 E-value=2.3e-19 Score=183.34 Aligned_cols=135 Identities=19% Similarity=0.238 Sum_probs=100.6
Q ss_pred ccceeeeCCC---CCCCCCCCCCCCCeEEEEEcCC-----------CceEEEeeecccc-ccccccCCceEEEEEEEEeC
Q psy1440 142 RPQASWSAGQ---GPIKDVYNIGENPQFRLEVGGG-----------VGAVWILLTRHIT-QLEDFKQNREYITVLVYKNE 206 (283)
Q Consensus 142 ~~~G~W~~~~---Gg~~~~~tf~~NPQy~l~v~~~-----------~~~v~i~L~~~~~-~~~~~~i~~~~i~~~v~~~~ 206 (283)
.++|+|.+|+ ||.+++.||+.||||.|++.+. +|+|+|.|+|+.+ ..+........||++||+++
T Consensus 360 ~~~g~W~~g~taGG~~~~~~tf~~NPqf~l~v~~~~~~~~~~~~~~~~~v~i~L~Q~~~r~~~~~~~~~~~igf~v~~~~ 439 (900)
T 1qxp_A 360 FYEGTWRRGSTAGGCRNYPATFWVNPQFKIRLEEVDDADDYDSRESGCSFLLALMQKHRRRERRFGRDMETIGFAVYQVP 439 (900)
T ss_dssp EEEEEECTTTTCCCCTTCTTTGGGSCBCEEEECSCCC-----CCSSCCEEEEEEEEC----------CCCCEEEEEEECC
T ss_pred eccccccCCCCCCCCCCcccccccCceEEEEEccCCccccccccCCCcEEEEEeeecccccccccCCCceeeEEEEEEec
Confidence 5699999885 5666668999999999999742 2789999988432 22322334556889999874
Q ss_pred C----cee-----ecCCCCCCcccCccccCcceEEEEEEecCCCccEEEEeeccCCCCcccEEEEEEeCCCceeeecCCC
Q psy1440 207 G----KRV-----YYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIENP 277 (283)
Q Consensus 207 g----~rv-----~~~~~~~~~~sg~y~~~~~~~~~~~l~~l~~G~Y~vVpST~~p~~~g~F~L~v~s~~~~~l~~i~~~ 277 (283)
. .+. ++.....++.++.|+++|++.+++.| +||+|+||||||+|+++|+|+|||||..++.+.++...
T Consensus 440 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Rev~~~~~L---~pG~Y~IVPst~~p~~e~~F~Lrv~s~~~~~~~eld~~ 516 (900)
T 1qxp_A 440 RELAGQPVHLKRDFFLANASRAQSEHFINLREVSNRIRL---PPGEYIVVPSTFEPNKEGDFLLRFFSEKKAGTQELDDQ 516 (900)
T ss_dssp SCC----CCCCHHHHTTSCCCSBCSSCBSSSCEEEEEEC---CSEEEEEEEEESSSSCCEEEEEEEEESSCEEECCBCCC
T ss_pred cccccccccCChhhhccCCCccccCCccccCceeEeEEe---CCCCEEEEeecCCCCCCCCceEEEeccCCcceeecCcc
Confidence 2 222 22333445678899999998888765 99999999999999999999999999999998887766
Q ss_pred Cc
Q psy1440 278 YQ 279 (283)
Q Consensus 278 ~~ 279 (283)
..
T Consensus 517 ~~ 518 (900)
T 1qxp_A 517 IQ 518 (900)
T ss_dssp CE
T ss_pred cc
Confidence 53
No 3
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L
Probab=99.78 E-value=1.3e-19 Score=180.91 Aligned_cols=135 Identities=14% Similarity=0.230 Sum_probs=100.5
Q ss_pred ccceeeeCCC--CC-CCCCCCCCCCCeEEEEEcCC---------CceEEEeeeccc-cccccccCCceEEEEEEEEeCC-
Q psy1440 142 RPQASWSAGQ--GP-IKDVYNIGENPQFRLEVGGG---------VGAVWILLTRHI-TQLEDFKQNREYITVLVYKNEG- 207 (283)
Q Consensus 142 ~~~G~W~~~~--Gg-~~~~~tf~~NPQy~l~v~~~---------~~~v~i~L~~~~-~~~~~~~i~~~~i~~~v~~~~g- 207 (283)
.++|+|.++. || .++..||+.||||.|+|.+. +|+|+|.|+|+. |..+........|+++||+++.
T Consensus 360 ~~~g~W~~g~taGG~~~~~~tf~~NPqf~l~v~~~~~~~~~~~~~~~v~v~L~Q~~~r~~~~~g~~~~~Igf~v~~~~~~ 439 (714)
T 3bow_A 360 KMDGNWRRGSTAGGCRNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFLVGLIQKHRRRQRKMGEDMHTIGFGIYEVPEE 439 (714)
T ss_dssp EEEEEECTTTTCCCCTTCHHHHTTSCCEEEEECGGGCBCGGGCCBEEEEEEEEEESCGGGGGGTCCCCCEEEEEEECCGG
T ss_pred EEeceeccCCCCCCCCCccccccCCceEEEEEccCCccccccCCccEEEEEeeeeccccccccCCCcceEEEEEEEeccc
Confidence 5799999876 54 45447999999999999741 268999998843 2223233445678899998742
Q ss_pred ---c------eeecCCCCCCcccCccccCcceEEEEEEecCCCccEEEEeeccCCCCcccEEEEEEeCCCceeeecCCCC
Q psy1440 208 ---K------RVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIENPY 278 (283)
Q Consensus 208 ---~------rv~~~~~~~~~~sg~y~~~~~~~~~~~l~~l~~G~Y~vVpST~~p~~~g~F~L~v~s~~~~~l~~i~~~~ 278 (283)
. +.++.....++.++.|.+.|++.+++.| +||+|+||||||+|+++|+|.|||||..+..+.++++..
T Consensus 440 ~~~~~~~~l~~~ff~~~~~~~~s~~f~~~Rev~~~~~L---~pG~Y~IVPstf~p~~e~~F~Lrv~s~~~~~~~el~~~~ 516 (714)
T 3bow_A 440 LTGQTNIHLSKNFFLTTRARERSDTFINLREVLNRFKL---PPGEYVLVPSTFEPHKNGDFCIRVFSEKKADYQTVDDEI 516 (714)
T ss_dssp GSSCTTCCCCHHHHHHCCCSEECSCEESSSEEEEEEEE---CSEEEEEEEEESSTTCCEEEEEEEEEEESSCC--CCCSC
T ss_pred ccCccccccchhhccccCCccccCCcccccceEEEEEe---CCCCeEEEEecCCCCCccceeEEEeccCCcceeeccccc
Confidence 1 1122223345677899999998888876 999999999999999999999999999999888887764
Q ss_pred c
Q psy1440 279 Q 279 (283)
Q Consensus 279 ~ 279 (283)
.
T Consensus 517 ~ 517 (714)
T 3bow_A 517 E 517 (714)
T ss_dssp E
T ss_pred c
Confidence 3
No 4
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Probab=99.32 E-value=5.9e-12 Score=128.63 Aligned_cols=137 Identities=18% Similarity=0.181 Sum_probs=96.9
Q ss_pred cchhccccccee-cccCCCCC------------------------CcCC-CCCCCCCcEEEEEcCC-----------Cce
Q psy1440 2 KAVKSYWENYLL-AYTAGQGP------------------------IKDV-YNIGENPQFRLEVGGG-----------VGA 44 (283)
Q Consensus 2 ~~v~~~f~~ly~-nW~p~~~~------------------------~~d~-~~~~~NPQy~l~~~~~-----------~~~ 44 (283)
++++++|+.+++ +|+|+.+. +++. .+++.||||.|++... ..+
T Consensus 329 ~df~~~F~~~~ic~~~~~~~~~~~~~~w~~~~~~g~W~~g~taGG~~~~~~tf~~NPqf~l~v~~~~~~~~~~~~~~~~~ 408 (900)
T 1qxp_A 329 RDFIREFTKLEICNLTPDALKSRTLRNWNTTFYEGTWRRGSTAGGCRNYPATFWVNPQFKIRLEEVDDADDYDSRESGCS 408 (900)
T ss_dssp TTSSSCSEEEEEBCCCC--CCSSCSCCCBCCEEEEEECTTTTCCCCTTCTTTGGGSCBCEEEECSCCC-----CCSSCCE
T ss_pred HHHHhhCCeEEEEEecchhhccccCCceEEEeccccccCCCCCCCCCCcccccccCceEEEEEccCCccccccccCCCcE
Confidence 589999999998 77776431 1122 4678899999999642 157
Q ss_pred EEEEEEecccccc-cccCCCCeEEEEEEeeC----CeEEEccC-----CCCCCcccceeCCceEEEEEEecCCCCccEEE
Q psy1440 45 VWILLTRHITQLE-DFKQNREYITVLVYKNE----GKRVYYPY-----DPPPYLDGVRINSPHYLCKIILNENSSRKYTL 114 (283)
Q Consensus 45 vwvlL~rH~~~~~-d~~~~~~~i~l~v~~~~----g~rv~~~~-----~~~~~~~g~~~ns~~~l~~~~~~p~~~~~ytl 114 (283)
|||.|.|+-.... ........|+++||+.+ |.++.++. .......+.|+|++++.++++++|| .|.+
T Consensus 409 v~i~L~Q~~~r~~~~~~~~~~~igf~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Rev~~~~~L~pG---~Y~I 485 (900)
T 1qxp_A 409 FLLALMQKHRRRERRFGRDMETIGFAVYQVPRELAGQPVHLKRDFFLANASRAQSEHFINLREVSNRIRLPPG---EYIV 485 (900)
T ss_dssp EEEEEEEC----------CCCCEEEEEEECCSCC----CCCCHHHHTTSCCCSBCSSCBSSSCEEEEEECCSE---EEEE
T ss_pred EEEEeeecccccccccCCCceeeEEEEEEeccccccccccCChhhhccCCCccccCCccccCceeEeEEeCCC---CEEE
Confidence 9999988743221 11123356999999974 33443432 2234456889999999999999996 8999
Q ss_pred EEeccccccccccEEEEEeCcceEEec
Q psy1440 115 VVSQYEKMHTIYYTLRAYATCPFRLEK 141 (283)
Q Consensus 115 V~s~~e~~~~~~ftL~~~s~~~~~l~~ 141 (283)
|+++|++..+..|+|++||..++.+.+
T Consensus 486 VPst~~p~~e~~F~Lrv~s~~~~~~~e 512 (900)
T 1qxp_A 486 VPSTFEPNKEGDFLLRFFSEKKAGTQE 512 (900)
T ss_dssp EEEESSSSCCEEEEEEEEESSCEEECC
T ss_pred EeecCCCCCCCCceEEEeccCCcceee
Confidence 999999988999999999999987654
No 5
>2qfe_A Calpain-7; C2-like domain, hydrolase, nuclear protein, protease, thiol protease; 1.45A {Homo sapiens}
Probab=99.31 E-value=1e-11 Score=100.13 Aligned_cols=120 Identities=12% Similarity=0.073 Sum_probs=87.0
Q ss_pred ccceecccCC-CCCCcCCC-CCCCCCcEEEEEcCCCceEEEEEEecccccccccCCCCeEEEEEEeeCCeEEEccCCCCC
Q psy1440 9 ENYLLAYTAG-QGPIKDVY-NIGENPQFRLEVGGGVGAVWILLTRHITQLEDFKQNREYITVLVYKNEGKRVYYPYDPPP 86 (283)
Q Consensus 9 ~~ly~nW~p~-~~~~~d~~-~~~~NPQy~l~~~~~~~~vwvlL~rH~~~~~d~~~~~~~i~l~v~~~~g~rv~~~~~~~~ 86 (283)
..+-..|... -|.+++.. +++.||||.|++... ++|.|.|.. ...--|+++||+.+..+..++..-..
T Consensus 25 ~~~~G~W~g~tAGGc~n~~~tf~~NPQy~l~l~~~-~~v~i~L~~---------~~~~~IGf~v~~v~~~~~~l~~~f~~ 94 (148)
T 2qfe_A 25 KRINGKWSGQSAGGCGNFQETHKNNPIYQFHIEKT-GPLLIELRG---------PRQYSVGFEVVTVSTLGDPGPHGFLR 94 (148)
T ss_dssp EEEEEEECGGGCCCCTTCTTTGGGSCCEEEEESSC-EEEEEEEEC---------CTTSEEEEEEEEEECCSCCCTTCCSE
T ss_pred EEEcCEECCCccCCCccccccccCCcEEEEEEcCC-ccEEEEecC---------CCccccceEEEEECCCCCccccceee
Confidence 3566889533 26677764 999999999999874 889998842 11246999999974322222221111
Q ss_pred CcccceeCCceEEEEEEecCCCCccEEEEEeccccccccccEEEEEeCcceEEec
Q psy1440 87 YLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEK 141 (283)
Q Consensus 87 ~~~g~~~ns~~~l~~~~~~p~~~~~ytlV~s~~e~~~~~~ftL~~~s~~~~~l~~ 141 (283)
...+.|.+......++.|+|| .|++|+|+|++..+..|.|++|+..++.+++
T Consensus 95 ~~s~~~~~~~~v~~~~~L~pG---~YvIVPSTf~P~~eg~F~LrVfs~~~~~l~~ 146 (148)
T 2qfe_A 95 KSSGDYRCGFCYLELENIPSG---IFNIIPSTFLPKQEGPFFLDFNSIIPIKITQ 146 (148)
T ss_dssp EECCSCEESEEEEEEEEECSE---EEEEEEEESSTTCCEEEEEEEEESSCCEEEE
T ss_pred eCCceeccCceEEEEEEcCCC---CEEEEeccCCCCCccceEEEEEeCCCCeeEe
Confidence 234455555667778899986 9999999999999999999999999987764
No 6
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L
Probab=99.12 E-value=5.8e-11 Score=118.47 Aligned_cols=136 Identities=13% Similarity=0.136 Sum_probs=94.6
Q ss_pred cchhcccccceec-ccCCCC------------------------CCcCC-CCCCCCCcEEEEEcCC---------CceEE
Q psy1440 2 KAVKSYWENYLLA-YTAGQG------------------------PIKDV-YNIGENPQFRLEVGGG---------VGAVW 46 (283)
Q Consensus 2 ~~v~~~f~~ly~n-W~p~~~------------------------~~~d~-~~~~~NPQy~l~~~~~---------~~~vw 46 (283)
+|++++|+.++++ +.|+.. .+++. .+++.||||.|++... +.+|+
T Consensus 329 ~df~~~F~~~~ic~~~~~~~~~~~~~~w~~~~~~g~W~~g~taGG~~~~~~tf~~NPqf~l~v~~~~~~~~~~~~~~~v~ 408 (714)
T 3bow_A 329 SDFLRHYSRLEICNLTPDTLTCDSYKKWKLTKMDGNWRRGSTAGGCRNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFL 408 (714)
T ss_dssp HHHHHHCCEEEEEESSSSCTTCSSCCEEEEEEEEEEECTTTTCCCCTTCHHHHTTSCCEEEEECGGGCBCGGGCCBEEEE
T ss_pred HHHHhhCCeEEEEEecccccccccCcceEEEEEeceeccCCCCCCCCCccccccCCceEEEEEccCCccccccCCccEEE
Confidence 4789999999985 344321 12222 3678899999999642 25799
Q ss_pred EEEEecccccc-cccCCCCeEEEEEEeeCC----eE-EEccC-----CCCCCcccceeCCceEEEEEEecCCCCccEEEE
Q psy1440 47 ILLTRHITQLE-DFKQNREYITVLVYKNEG----KR-VYYPY-----DPPPYLDGVRINSPHYLCKIILNENSSRKYTLV 115 (283)
Q Consensus 47 vlL~rH~~~~~-d~~~~~~~i~l~v~~~~g----~r-v~~~~-----~~~~~~~g~~~ns~~~l~~~~~~p~~~~~ytlV 115 (283)
|.|.++-.... ........|+++||+.+. .+ +.++. .......+.|+|++++.+++.|+|| .|++|
T Consensus 409 v~L~Q~~~r~~~~~g~~~~~Igf~v~~~~~~~~~~~~~~l~~~ff~~~~~~~~s~~f~~~Rev~~~~~L~pG---~Y~IV 485 (714)
T 3bow_A 409 VGLIQKHRRRQRKMGEDMHTIGFGIYEVPEELTGQTNIHLSKNFFLTTRARERSDTFINLREVLNRFKLPPG---EYVLV 485 (714)
T ss_dssp EEEEEESCGGGGGGTCCCCCEEEEEEECCGGGSSCTTCCCCHHHHHHCCCSEECSCEESSSEEEEEEEECSE---EEEEE
T ss_pred EEeeeeccccccccCCCcceEEEEEEEecccccCccccccchhhccccCCccccCCcccccceEEEEEeCCC---CeEEE
Confidence 99988743321 112334569999999732 11 22211 1122335789999999999999996 89999
Q ss_pred EeccccccccccEEEEEeCcceEEe
Q psy1440 116 VSQYEKMHTIYYTLRAYATCPFRLE 140 (283)
Q Consensus 116 ~s~~e~~~~~~ftL~~~s~~~~~l~ 140 (283)
+++|++..+..|+|++||..+..+.
T Consensus 486 Pstf~p~~e~~F~Lrv~s~~~~~~~ 510 (714)
T 3bow_A 486 PSTFEPHKNGDFCIRVFSEKKADYQ 510 (714)
T ss_dssp EEESSTTCCEEEEEEEEEEESSCC-
T ss_pred EecCCCCCccceeEEEeccCCccee
Confidence 9999998899999999998775433
No 7
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Probab=93.47 E-value=0.013 Score=54.89 Aligned_cols=44 Identities=7% Similarity=-0.072 Sum_probs=35.3
Q ss_pred cccCccccCcceEEEEEEecCCCccEEEEeeccCCCCcccEEEEEEeCCCcee
Q psy1440 219 YLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRL 271 (283)
Q Consensus 219 ~~sg~y~~~~~~~~~~~l~~l~~G~Y~vVpST~~p~~~g~F~L~v~s~~~~~l 271 (283)
+.+..|++.|++ + .|+||.| |||++|.++|+|.||+++...+..
T Consensus 244 a~s~~y~n~ReV---~---~L~pG~y---PSt~Ep~~EgdflLRvfs~k~iD~ 287 (450)
T 3sg6_A 244 AMPEGYIQERTI---F---FKDDGNY---KTRAEVKFEGDTLVNRIELKGIDF 287 (450)
T ss_dssp TTTTCEEEEEEE---E---ETTSCEE---EEEEEEEEETTEEEEEEEEEEESC
T ss_pred cCCccceeecce---e---ccCCCCC---CcccchhhccchhhheeccccCCc
Confidence 456678877774 2 2699999 999999999999999998765544
No 8
>1nqj_A Class 1 collagenase; beta sandwich, metalloprotease, collagen-binding domain, lithium, chlorine, hydrolase; 1.00A {Clostridium histolyticum} SCOP: b.23.2.1 PDB: 2o8o_A 1nqd_A
Probab=74.98 E-value=11 Score=28.32 Aligned_cols=78 Identities=23% Similarity=0.168 Sum_probs=45.0
Q ss_pred CeEEEEEcCCCceEEEeeeccccccccccCCceEEEEEEEEeCCceeecCCCCCCcccCccccCcceEEEEEEecCCCcc
Q psy1440 164 PQFRLEVGGGVGAVWILLTRHITQLEDFKQNREYITVLVYKNEGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRK 243 (283)
Q Consensus 164 PQy~l~v~~~~~~v~i~L~~~~~~~~~~~i~~~~i~~~v~~~~g~rv~~~~~~~~~~sg~y~~~~~~~~~~~l~~l~~G~ 243 (283)
--|.|.|.+ .+.|.|.|... ...++ ...||...+-. ..++ .+.-. -......+.+ .||+
T Consensus 41 D~y~f~v~~-~g~v~I~l~~~------~~~~~---~w~ly~~~dl~------nyv~-y~~~~-gn~~~~~~~~---~pGk 99 (119)
T 1nqj_A 41 DYYSFEVKE-EGEVNIELDKK------DEFGV---TWTLHPESNIN------DRIT-YGQVD-GNKVSNKVKL---RPGK 99 (119)
T ss_dssp EEEEEEESS-CEEEEEEEEES------SSSEE---EEEEEECC----------CCE-ECEEE-TTEEEEEEEE---CSEE
T ss_pred EEEEEECCC-CCeEEEEEEeC------CCCCE---EEEEEccCCCc------cceE-EeecC-CCcEEEEEEc---CCcE
Confidence 458999984 78899988541 11222 24577654410 1111 11000 0111345554 8999
Q ss_pred EEEEeeccCCCCcccEEEEEE
Q psy1440 244 YTLVVSQYEKMHTIYYTLRAY 264 (283)
Q Consensus 244 Y~vVpST~~p~~~g~F~L~v~ 264 (283)
|-|-+..| +-.|.|.|.|-
T Consensus 100 YYl~Vy~y--~~~g~Y~l~v~ 118 (119)
T 1nqj_A 100 YYLLVYKY--SGSGNYELRVN 118 (119)
T ss_dssp EEEEEEEE--ESCEEEEEEEE
T ss_pred EEEEEEEe--CCCceEEEEEe
Confidence 99999988 56899999873
No 9
>3jqw_A COLH protein, collagenase; beta-barrel, dual calcium site, cell adhesion; 2.00A {Clostridium histolyticum} SCOP: b.23.2.0 PDB: 3jqx_A
Probab=70.41 E-value=30 Score=25.93 Aligned_cols=81 Identities=19% Similarity=0.228 Sum_probs=48.8
Q ss_pred CCeEEEEEcCCCceEEEeeeccccccccccCCceEEEEEEEEeCCceeecCCCCCCcccCccccCcceEEEEEEecCCCc
Q psy1440 163 NPQFRLEVGGGVGAVWILLTRHITQLEDFKQNREYITVLVYKNEGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSR 242 (283)
Q Consensus 163 NPQy~l~v~~~~~~v~i~L~~~~~~~~~~~i~~~~i~~~v~~~~g~rv~~~~~~~~~~sg~y~~~~~~~~~~~l~~l~~G 242 (283)
.--|.|.|+ +++.|.|.|... . ..++ ...||...+..+.... .+| . .....+.+ ..||
T Consensus 38 ~D~y~F~V~-~~g~v~I~l~~~---~---~~~~---~w~ly~~~~nyv~y~~-----~~g----n-~~~~~~~~--~~pG 95 (121)
T 3jqw_A 38 QDYFYFDVI-TPGEVKIDINKL---G---YGGA---TWVVYDENNNAVSYAT-----DDG----Q-NLSGKFKA--DKPG 95 (121)
T ss_dssp CEEEEEEES-SCEEEEEEEEEC---S---SSEE---EEEEECTTSCEEEECE-----ECS----S-EEEEEEEE--CSCE
T ss_pred eeEEEEEeC-CCCeEEEEEEec---C---CCcE---EEEEEeCCCCeEEEec-----cCC----C-EEEEEEEe--CCCe
Confidence 456899999 478899888541 1 1222 2456655433332211 112 1 11334443 2999
Q ss_pred cEEEEeeccCCCCcccEEEEEEeC
Q psy1440 243 KYTLVVSQYEKMHTIYYTLRAYAT 266 (283)
Q Consensus 243 ~Y~vVpST~~p~~~g~F~L~v~s~ 266 (283)
+|-|.+.-|. +..|.|.|+|--+
T Consensus 96 kYYl~Vy~y~-~~~g~Y~l~i~g~ 118 (121)
T 3jqw_A 96 RYYIHLYMFN-GSYMPYRINIEGS 118 (121)
T ss_dssp EEEEEEEEEE-CSCEEEEEEEEEC
T ss_pred eEEEEEEEec-CCCccEEEEEEee
Confidence 9999999886 5579999998644
No 10
>3jqw_A COLH protein, collagenase; beta-barrel, dual calcium site, cell adhesion; 2.00A {Clostridium histolyticum} SCOP: b.23.2.0 PDB: 3jqx_A
Probab=68.35 E-value=35 Score=25.54 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=49.8
Q ss_pred CCcEEEEEcCCCceEEEEEEecccccccccCCCCeEEEEEEeeCCeEEEccCCCCCCcccceeCCceEEEEEEe-cCCCC
Q psy1440 31 NPQFRLEVGGGVGAVWILLTRHITQLEDFKQNREYITVLVYKNEGKRVYYPYDPPPYLDGVRINSPHYLCKIIL-NENSS 109 (283)
Q Consensus 31 NPQy~l~~~~~~~~vwvlL~rH~~~~~d~~~~~~~i~l~v~~~~g~rv~~~~~~~~~~~g~~~ns~~~l~~~~~-~p~~~ 109 (283)
.-=|.+.+++ +++|-|-|... +..-+...+|..++..|.++.. + ......++.+ +||
T Consensus 38 ~D~y~F~V~~-~g~v~I~l~~~---------~~~~~~w~ly~~~~nyv~y~~~-----~-----gn~~~~~~~~~~pG-- 95 (121)
T 3jqw_A 38 QDYFYFDVIT-PGEVKIDINKL---------GYGGATWVVYDENNNAVSYATD-----D-----GQNLSGKFKADKPG-- 95 (121)
T ss_dssp CEEEEEEESS-CEEEEEEEEEC---------SSSEEEEEEECTTSCEEEECEE-----C-----SSEEEEEEEECSCE--
T ss_pred eeEEEEEeCC-CCeEEEEEEec---------CCCcEEEEEEeCCCCeEEEecc-----C-----CCEEEEEEEeCCCe--
Confidence 4557888877 48998888852 1245788889887555544431 1 1123456788 775
Q ss_pred ccEEEEEeccccccccccEEEE
Q psy1440 110 RKYTLVVSQYEKMHTIYYTLRA 131 (283)
Q Consensus 110 ~~ytlV~s~~e~~~~~~ftL~~ 131 (283)
.|-|.|..|.. ..+.|+|.+
T Consensus 96 -kYYl~Vy~y~~-~~g~Y~l~i 115 (121)
T 3jqw_A 96 -RYYIHLYMFNG-SYMPYRINI 115 (121)
T ss_dssp -EEEEEEEEEEC-SCEEEEEEE
T ss_pred -eEEEEEEEecC-CCccEEEEE
Confidence 77777777753 467888776
No 11
>3gf8_A Putative polysaccharide binding proteins (DUF1812; NP_809975.1, joint center for structural genomics; HET: MSE; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=52.45 E-value=12 Score=32.56 Aligned_cols=47 Identities=11% Similarity=0.223 Sum_probs=28.3
Q ss_pred ceEEEEEEEEeCCceeecCCCCC-CcccCccccCcceEEEEEEecCCCccEEEEeec
Q psy1440 195 REYITVLVYKNEGKRVYYPYDPP-PYLDGVRINSPHYLCKIILNENSSRKYTLVVSQ 250 (283)
Q Consensus 195 ~~~i~~~v~~~~g~rv~~~~~~~-~~~sg~y~~~~~~~~~~~l~~l~~G~Y~vVpST 250 (283)
..-+.+.||..+|+-+....... ...++.| .+.++ ||+|.|++|.-.
T Consensus 36 V~~V~lyvFD~~G~~v~~~~~~~~~L~~~~y--------~m~l~-Lp~G~Y~~VaWg 83 (296)
T 3gf8_A 36 VDKVELYVFDKNGKYLFKQAEEGSALSTGNY--------LMEVE-LPVGQYQFMAWA 83 (296)
T ss_dssp CCEEEEEEECTTSBEEEEEEEESGGGGSSCC--------CEEEC-CCSEEEEEEEEE
T ss_pred cCEEEEEEEcCCCCEEEEEecchhhcccCce--------EEEEe-cCCCcEEEEEEE
Confidence 34466789988886554332211 1223333 34453 799999999875
No 12
>4g9s_B Inhibitor of G-type lysozyme, goose-type lysozyme; hydrolase inhibitor, hydrolase-hydrolase inhibitor; HET: FLC; 0.95A {Escherichia coli} PDB: 4dy3_A* 4dxz_A* 4dy5_A
Probab=46.94 E-value=10 Score=27.84 Aligned_cols=25 Identities=32% Similarity=0.305 Sum_probs=20.8
Q ss_pred CCccEEEEee----ccCCCCcccEEEEEE
Q psy1440 240 SSRKYTLVVS----QYEKMHTIYYTLRAY 264 (283)
Q Consensus 240 ~~G~Y~vVpS----T~~p~~~g~F~L~v~ 264 (283)
..|+|+|.+- ..+.++.++|.|.|.
T Consensus 81 ~sG~Y~I~V~~~r~~ar~~~~~~Y~L~v~ 109 (111)
T 4g9s_B 81 ASGKYELRVLQTRNDARKNKTKKYNVDIQ 109 (111)
T ss_dssp SSEEEEEEEECCHHHHHTTCEEEEEEEEE
T ss_pred CCccEEEEEEeccchhccCCCcCEEEEEE
Confidence 7799999984 456788999999884
No 13
>3gf8_A Putative polysaccharide binding proteins (DUF1812; NP_809975.1, joint center for structural genomics; HET: MSE; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=38.14 E-value=14 Score=32.18 Aligned_cols=53 Identities=17% Similarity=0.425 Sum_probs=34.3
Q ss_pred ccCCCCeEEEEEEeeCCeEEEccCCCCCCcccceeCCceEEEEEEecCCCCccEEEEEecc
Q psy1440 59 FKQNREYITVLVYKNEGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQY 119 (283)
Q Consensus 59 ~~~~~~~i~l~v~~~~g~rv~~~~~~~~~~~g~~~ns~~~l~~~~~~p~~~~~ytlV~s~~ 119 (283)
|++..+-+.|+||+.+|+-|..... +|....+..+-+.+.+++| .|++|+.--
T Consensus 32 f~~~V~~V~lyvFD~~G~~v~~~~~-----~~~~L~~~~y~m~l~Lp~G---~Y~~VaWgg 84 (296)
T 3gf8_A 32 FHAQVDKVELYVFDKNGKYLFKQAE-----EGSALSTGNYLMEVELPVG---QYQFMAWAG 84 (296)
T ss_dssp HHHHCCEEEEEEECTTSBEEEEEEE-----ESGGGGSSCCCEEECCCSE---EEEEEEEES
T ss_pred cccccCEEEEEEEcCCCCEEEEEec-----chhhcccCceEEEEecCCC---cEEEEEEEC
Confidence 3444567999999998877765432 1122223334577788875 999997754
No 14
>1nqj_A Class 1 collagenase; beta sandwich, metalloprotease, collagen-binding domain, lithium, chlorine, hydrolase; 1.00A {Clostridium histolyticum} SCOP: b.23.2.1 PDB: 2o8o_A 1nqd_A
Probab=33.46 E-value=1.5e+02 Score=22.01 Aligned_cols=77 Identities=23% Similarity=0.245 Sum_probs=45.0
Q ss_pred CcEEEEEcCCCceEEEEEEecccccccccCCCCeEEEEEEeeCCeEEEccCCCCCCcccceeCCceEEEEEEecCCCCcc
Q psy1440 32 PQFRLEVGGGVGAVWILLTRHITQLEDFKQNREYITVLVYKNEGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRK 111 (283)
Q Consensus 32 PQy~l~~~~~~~~vwvlL~rH~~~~~d~~~~~~~i~l~v~~~~g~rv~~~~~~~~~~~g~~~ns~~~l~~~~~~p~~~~~ 111 (283)
-=|++.+++. ++|-|-|.-.. ..-+...+|..++-.- .+..| .........++.+.|| .
T Consensus 41 D~y~f~v~~~-g~v~I~l~~~~---------~~~~~w~ly~~~dl~n-------yv~y~-~~~gn~~~~~~~~~pG---k 99 (119)
T 1nqj_A 41 DYYSFEVKEE-GEVNIELDKKD---------EFGVTWTLHPESNIND-------RITYG-QVDGNKVSNKVKLRPG---K 99 (119)
T ss_dssp EEEEEEESSC-EEEEEEEEESS---------SSEEEEEEEECC-----------CCEEC-EEETTEEEEEEEECSE---E
T ss_pred EEEEEECCCC-CeEEEEEEeCC---------CCCEEEEEEccCCCcc-------ceEEe-ecCCCcEEEEEEcCCc---E
Confidence 3477778763 88888777431 1236777887754111 11222 1112233467888875 7
Q ss_pred EEEEEeccccccccccEEEE
Q psy1440 112 YTLVVSQYEKMHTIYYTLRA 131 (283)
Q Consensus 112 ytlV~s~~e~~~~~~ftL~~ 131 (283)
|-|-|..| ..++.|+|.+
T Consensus 100 YYl~Vy~y--~~~g~Y~l~v 117 (119)
T 1nqj_A 100 YYLLVYKY--SGSGNYELRV 117 (119)
T ss_dssp EEEEEEEE--ESCEEEEEEE
T ss_pred EEEEEEEe--CCCceEEEEE
Confidence 77777777 3588888875
No 15
>3pay_A Putative adhesin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, cell adhesion; 2.50A {Bacteroides ovatus}
Probab=32.42 E-value=40 Score=29.60 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=27.8
Q ss_pred ceEEEEEEEEeCCceeecCCCCCCcccCccccCcceEEEEEEec-CCCccEEEEeec
Q psy1440 195 REYITVLVYKNEGKRVYYPYDPPPYLDGVRINSPHYLCKIILNE-NSSRKYTLVVSQ 250 (283)
Q Consensus 195 ~~~i~~~v~~~~g~rv~~~~~~~~~~sg~y~~~~~~~~~~~l~~-l~~G~Y~vVpST 250 (283)
..-+.+.||..+|+-+...... +.-. ..+ . .+.++. |+||.|++|.-.
T Consensus 35 V~~v~lyvFD~~G~~v~~~~~~-----~~~L-~~~-~-~m~l~~~l~~G~Y~~VaWg 83 (314)
T 3pay_A 35 VKSVDVLVFDSDDKLLFTKSVK-----VAAL-VGG-N-RMSLTDELDFGSYKVLTVG 83 (314)
T ss_dssp CCEEEEEEECTTSBEEEEEEEE-----GGGS-BTT-T-EEECTTTCCSEEEEEEEEE
T ss_pred cCEEEEEEEcCCCCEEEEEecc-----hhhc-cCC-c-eEecCCcCCCCcEEEEEEe
Confidence 4456688998888665432221 1111 122 1 455532 789999999865
No 16
>3od9_A Putative exported protein; beta sandwich, C-terminal helix, hydrolase inhibitor; 1.41A {Aeromonas hydrophila}
Probab=31.28 E-value=64 Score=24.47 Aligned_cols=28 Identities=29% Similarity=0.256 Sum_probs=23.1
Q ss_pred CCCccEEEEee--ccCCCCcccEEEEEEeCC
Q psy1440 239 NSSRKYTLVVS--QYEKMHTIYYTLRAYATC 267 (283)
Q Consensus 239 l~~G~Y~vVpS--T~~p~~~g~F~L~v~s~~ 267 (283)
||.| .++|.| -.||..-|+|.+++|++.
T Consensus 11 Lp~g-~~~VvseG~lEP~SiGSYsV~lY~~~ 40 (135)
T 3od9_A 11 LPSG-QVVTVSEGRGEPASTGSYDVRLYSGA 40 (135)
T ss_dssp CTTS-CEEEEEECTTCCSSSEEEEEEEECCC
T ss_pred CCCC-cEEEEecCCCCccccccEEEEEEecC
Confidence 5877 556655 788999999999999987
No 17
>3pay_A Putative adhesin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, cell adhesion; 2.50A {Bacteroides ovatus}
Probab=28.58 E-value=38 Score=29.70 Aligned_cols=54 Identities=13% Similarity=0.207 Sum_probs=33.6
Q ss_pred cccCCCCeEEEEEEeeCCeEEEccCCCCCCcccceeCCceEEEEEE--ecCCCCccEEEEEeccc
Q psy1440 58 DFKQNREYITVLVYKNEGKRVYYPYDPPPYLDGVRINSPHYLCKII--LNENSSRKYTLVVSQYE 120 (283)
Q Consensus 58 d~~~~~~~i~l~v~~~~g~rv~~~~~~~~~~~g~~~ns~~~l~~~~--~~p~~~~~ytlV~s~~e 120 (283)
-|++..+-+.|+||+.+|+-|..... +|....... .+.+. ++|| .|++|+.---
T Consensus 30 ~f~~~V~~v~lyvFD~~G~~v~~~~~-----~~~~L~~~~-~m~l~~~l~~G---~Y~~VaWgg~ 85 (314)
T 3pay_A 30 AFNPQVKSVDVLVFDSDDKLLFTKSV-----KVAALVGGN-RMSLTDELDFG---SYKVLTVGSL 85 (314)
T ss_dssp CHHHHCCEEEEEEECTTSBEEEEEEE-----EGGGSBTTT-EEECTTTCCSE---EEEEEEEESC
T ss_pred chhcccCEEEEEEEcCCCCEEEEEec-----chhhccCCc-eEecCCcCCCC---cEEEEEEeCC
Confidence 34445567999999999977765432 111222333 46666 6664 9999977543
No 18
>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=24.77 E-value=1.5e+02 Score=21.80 Aligned_cols=45 Identities=11% Similarity=-0.109 Sum_probs=29.4
Q ss_pred EEEEEEecCCCccEEEEeeccCCC-CcccEEEEEEeCCCceeeecCCC
Q psy1440 231 LCKIILNENSSRKYTLVVSQYEKM-HTIYYTLRAYATCPFRLEKIENP 277 (283)
Q Consensus 231 ~~~~~l~~l~~G~Y~vVpST~~p~-~~g~F~L~v~s~~~~~l~~i~~~ 277 (283)
.+.+... .+|.|.|-..-.... ...+|.+.|....-..+..+|..
T Consensus 70 ~V~Y~p~--~~G~y~I~V~~~g~~I~gSPF~v~v~~~~~~~~~~~p~~ 115 (124)
T 2dmb_A 70 DIFYTAA--KPGTYVIYVRFGGVDIPNSPFTVMATDGEVTAVEEAPVN 115 (124)
T ss_dssp EEEEECS--SCEEEEEEEEESSCBCTTCSEEEEEECCSCCCCCCCCCC
T ss_pred EEEEEcC--CCEEEEEEEEECCEECCCCCeEEEEEcCCccccccCCcc
Confidence 4556554 789999988644422 34679999987755555556554
No 19
>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A*
Probab=20.20 E-value=1.7e+02 Score=20.36 Aligned_cols=31 Identities=10% Similarity=-0.032 Sum_probs=21.5
Q ss_pred CCccEEEEeeccCCCCcccEEEEEEeCCCceeee
Q psy1440 240 SSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEK 273 (283)
Q Consensus 240 ~~G~Y~vVpST~~p~~~g~F~L~v~s~~~~~l~~ 273 (283)
++|+|.|=.|.-.| |.|.|+|.....+.-..
T Consensus 29 ~~G~FLVR~S~~~~---g~~~LSv~~~~~v~H~~ 59 (100)
T 1r1p_A 29 DIGFFIIRASQSSP---GDFSISVRHEDDVQHFK 59 (100)
T ss_dssp CTTBEEEEECSSST---TCEEEEEECSSSEEEEE
T ss_pred CCCEEEEEecCCCC---CCEEEEEEECCEEEEEE
Confidence 67888888887544 56888888765544433
Done!