RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy1440
         (283 letters)



>gnl|CDD|238132 cd00214, Calpain_III, Calpain, subdomain III. Calpains are
           calcium-activated cytoplasmic cysteine proteinases,
           participate in cytoskeletal remodeling processes, cell
           differentiation, apoptosis and signal transduction.
           Catalytic domain and the two calmodulin-like domains are
           separated by C2-like domain III. Domain III plays an
           important role in calcium-induced activation of calpain
           involving electrostatic interactions with subdomain II.
           Proposed to mediate calpain's interaction with
           phospholipids and translocation to cytoplasmic/nuclear
           membranes. CD includes subdomain III of typical and
           atypical calpains.
          Length = 150

 Score = 30.7 bits (70), Expect = 0.48
 Identities = 28/124 (22%), Positives = 43/124 (34%), Gaps = 20/124 (16%)

Query: 31  NPQFRLEV-----GGGVGAVWI-LLTRHITQLEDFKQNREYITVLVYKNEGKRVYYPYDP 84
           NPQFR+ V       G   V I L+ ++   L     +   I   VYK  G+  +   D 
Sbjct: 31  NPQFRIRVPEPDDDEGKCTVLIALMQKNRRHLRKKGLDLLTIGFHVYKVPGENRHLRRDF 90

Query: 85  PPYLDGVRINSPHYLCKIILN--ENSSRK------YTLVVSQYEKMHTIYYTLRAYATCP 136
                     +P       +N  E S R       Y +V S +E      + LR ++   
Sbjct: 91  ------FLHKAPRARSSTFINTREVSLRFRLPPGEYVIVPSTFEPGEEGEFLLRVFSEKS 144

Query: 137 FRLE 140
            +  
Sbjct: 145 IKSS 148



 Score = 30.7 bits (70), Expect = 0.48
 Identities = 28/124 (22%), Positives = 43/124 (34%), Gaps = 20/124 (16%)

Query: 163 NPQFRLEV-----GGGVGAVWI-LLTRHITQLEDFKQNREYITVLVYKNEGKRVYYPYDP 216
           NPQFR+ V       G   V I L+ ++   L     +   I   VYK  G+  +   D 
Sbjct: 31  NPQFRIRVPEPDDDEGKCTVLIALMQKNRRHLRKKGLDLLTIGFHVYKVPGENRHLRRDF 90

Query: 217 PPYLDGVRINSPHYLCKIILN--ENSSRK------YTLVVSQYEKMHTIYYTLRAYATCP 268
                     +P       +N  E S R       Y +V S +E      + LR ++   
Sbjct: 91  ------FLHKAPRARSSTFINTREVSLRFRLPPGEYVIVPSTFEPGEEGEFLLRVFSEKS 144

Query: 269 FRLE 272
            +  
Sbjct: 145 IKSS 148


>gnl|CDD|214786 smart00720, calpain_III, calpain_III domain. 
          Length = 143

 Score = 28.1 bits (63), Expect = 2.8
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 11/118 (9%)

Query: 31  NPQFRL---EVGGGVGAVWI-LLTRHITQLEDFKQNREYITVLVYKNEG----KRVYYPY 82
           NPQFR+   E       V I L+ ++  +L     +   I   VYK       +R ++  
Sbjct: 29  NPQFRITLEEPDDDDCTVLIALMQKNRRRLRRKGADFLTIGFAVYKVPKELHLRRDFFLS 88

Query: 83  DPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLE 140
           + P    G  IN      +  L       Y +V S +E      + LR ++  PF+L 
Sbjct: 89  NAPRASSGDYINGREVSERFRLPPGE---YVIVPSTFEPNQEGDFLLRVFSEGPFKLT 143



 Score = 28.1 bits (63), Expect = 2.8
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 11/118 (9%)

Query: 163 NPQFRL---EVGGGVGAVWI-LLTRHITQLEDFKQNREYITVLVYKNEG----KRVYYPY 214
           NPQFR+   E       V I L+ ++  +L     +   I   VYK       +R ++  
Sbjct: 29  NPQFRITLEEPDDDDCTVLIALMQKNRRRLRRKGADFLTIGFAVYKVPKELHLRRDFFLS 88

Query: 215 DPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLE 272
           + P    G  IN      +  L       Y +V S +E      + LR ++  PF+L 
Sbjct: 89  NAPRASSGDYINGREVSERFRLPPGE---YVIVPSTFEPNQEGDFLLRVFSEGPFKLT 143


>gnl|CDD|178240 PLN02633, PLN02633, palmitoyl protein thioesterase family
          protein.
          Length = 314

 Score = 28.3 bits (63), Expect = 4.8
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 8/43 (18%)

Query: 27 NIGENPQFRLEVGGGVGAVWIL-LTRH-------ITQLEDFKQ 61
          N+  +P F LE+G GVG  W++ LT+        + Q+++  Q
Sbjct: 52 NLSGSPGFCLEIGNGVGDSWLMPLTQQAEIACEKVKQMKELSQ 94



 Score = 28.3 bits (63), Expect = 4.8
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 8/43 (18%)

Query: 159 NIGENPQFRLEVGGGVGAVWIL-LTRH-------ITQLEDFKQ 193
           N+  +P F LE+G GVG  W++ LT+        + Q+++  Q
Sbjct: 52  NLSGSPGFCLEIGNGVGDSWLMPLTQQAEIACEKVKQMKELSQ 94


>gnl|CDD|118234 pfam09702, Cas_Csa5, CRISPR-associated protein (Cas_Csa5).
          CRISPR is a term for Clustered, Regularly Interspaced
          Short Palindromic Repeats. A number of protein families
          appear only in association with these repeats and are
          designated Cas (CRISPR-Associated) proteins. This entry
          represents a minor family of Cas proteins found in
          various species of Sulfolobus and Pyrococcus (all
          archaeal). It is found with two different CRISPR loci
          in Sulfolobus solfataricus.
          Length = 105

 Score = 26.3 bits (58), Expect = 9.4
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query: 54 TQLEDFKQNREYITVLVYKNEGKRVYYPYDP 84
           +L+  +  R YI V   + +G  +   Y P
Sbjct: 43 IRLQTGENGRRYIAVKEGEKDGNYIVVGYLP 73



 Score = 26.3 bits (58), Expect = 9.4
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query: 186 TQLEDFKQNREYITVLVYKNEGKRVYYPYDP 216
            +L+  +  R YI V   + +G  +   Y P
Sbjct: 43  IRLQTGENGRRYIAVKEGEKDGNYIVVGYLP 73


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.320    0.139    0.432 

Gapped
Lambda     K      H
   0.267   0.0702    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,980,704
Number of extensions: 1437551
Number of successful extensions: 1111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1107
Number of HSP's successfully gapped: 21
Length of query: 283
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 187
Effective length of database: 6,679,618
Effective search space: 1249088566
Effective search space used: 1249088566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.2 bits)