RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1440
(283 letters)
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 65.6 bits (159), Expect = 4e-12
Identities = 22/144 (15%), Positives = 43/144 (29%), Gaps = 24/144 (16%)
Query: 15 YTAGQGPIKDVYNIGENPQFRLEV----------GGGVGAVWILLTRHITQLEDFKQNRE 64
TAG G NPQ+ +++ G + L+ +H + ++
Sbjct: 369 STAG-GCRNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFLVGLIQKHRRRQRKMGEDMH 427
Query: 65 YITVLVYKNEG----------KRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTL 114
I +Y+ + ++ IN L + L Y L
Sbjct: 428 TIGFGIYEVPEELTGQTNIHLSKNFFLTTRARERSDTFINLREVLNRFKLPPGE---YVL 484
Query: 115 VVSQYEKMHTIYYTLRAYATCPFR 138
V S +E + +R ++
Sbjct: 485 VPSTFEPHKNGDFCIRVFSEKKAD 508
Score = 64.8 bits (157), Expect = 5e-12
Identities = 21/157 (13%), Positives = 48/157 (30%), Gaps = 26/157 (16%)
Query: 146 SWSAGQ---GPIKDVYNIGENPQFRLEV----------GGGVGAVWILLTRHITQLEDFK 192
+W G G NPQ+ +++ G + L+ +H +
Sbjct: 364 NWRRGSTAGGCRNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFLVGLIQKHRRRQRKMG 423
Query: 193 QNREYITVLVYKNEG----------KRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSR 242
++ I +Y+ + ++ IN L + L
Sbjct: 424 EDMHTIGFGIYEVPEELTGQTNIHLSKNFFLTTRARERSDTFINLREVLNRFKLPPGE-- 481
Query: 243 KYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIENPYQ 279
Y LV S +E + +R ++ + +++ +
Sbjct: 482 -YVLVPSTFEPHKNGDFCIRVFSEKKADYQTVDDEIE 517
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 58.2 bits (140), Expect = 9e-10
Identities = 26/158 (16%), Positives = 54/158 (34%), Gaps = 21/158 (13%)
Query: 146 SWSAGQ---GPIKDVYNIGENPQFRLEV------------GGGVGAVWILLTRHITQLED 190
+W G G NPQF++ + G + L+ +H +
Sbjct: 364 TWRRGSTAGGCRNYPATFWVNPQFKIRLEEVDDADDYDSRESGCSFLLALMQKHRRRERR 423
Query: 191 FKQNREYITVLVYKNEGKRVYYPYDPPPYL---DGVRINSPHYLCKIILNENSS---RKY 244
F ++ E I VY+ + P + R S H++ ++ +Y
Sbjct: 424 FGRDMETIGFAVYQVPRELAGQPVHLKRDFFLANASRAQSEHFINLREVSNRIRLPPGEY 483
Query: 245 TLVVSQYEKMHTIYYTLRAYATCPFRLEKIENPYQFKE 282
+V S +E + LR ++ +++++ Q
Sbjct: 484 IVVPSTFEPNKEGDFLLRFFSEKKAGTQELDDQIQANL 521
Score = 57.9 bits (139), Expect = 1e-09
Identities = 26/171 (15%), Positives = 53/171 (30%), Gaps = 19/171 (11%)
Query: 15 YTAGQGPIKDVYNIGENPQFRLEV------------GGGVGAVWILLTRHITQLEDFKQN 62
TAG G NPQF++ + G + L+ +H + F ++
Sbjct: 369 STAG-GCRNYPATFWVNPQFKIRLEEVDDADDYDSRESGCSFLLALMQKHRRRERRFGRD 427
Query: 63 REYITVLVYKNEGKRVYYPYDPPPYL---DGVRINSPHYLCKIILNENSS---RKYTLVV 116
E I VY+ + P + R S H++ ++ +Y +V
Sbjct: 428 METIGFAVYQVPRELAGQPVHLKRDFFLANASRAQSEHFINLREVSNRIRLPPGEYIVVP 487
Query: 117 SQYEKMHTIYYTLRAYATCPFRLEKRPQASWSAGQGPIKDVYNIGENPQFR 167
S +E + LR ++ ++ + ++
Sbjct: 488 STFEPNKEGDFLLRFFSEKKAGTQELDDQIQANLPDEKVLSEEEIDDNFKT 538
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.007
Identities = 40/269 (14%), Positives = 81/269 (30%), Gaps = 66/269 (24%)
Query: 42 VGAVWILLTRHITQLEDFKQ-NREYITVLV-------YKNEGKRVY-----YPYD---PP 85
+ + + + +++K N + +T ++ E ++++ +P P
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 86 PYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKM----HTIYYTLRAYATCPFRLEK 141
L + + +++N+ KY+LV Q ++ +IY L+ + L +
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNK--LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 142 R-------PQA-SWSAGQGPIKDVY-------------NIGENPQFR--------LEVG- 171
P+ P D Y + FR LE
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 172 GGVGAVWILLTRHITQLEDFKQNREYITVLVYKNEGKRVYYPYDPPPYLDGVR------I 225
W + L+ K + YI N+ K LD + I
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYIC----DNDPKYERLVNA---ILDFLPKIEENLI 560
Query: 226 NSPHY-LCKIILNENSSRKYTLVVSQYEK 253
S + L +I L + Q ++
Sbjct: 561 CSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 29.8 bits (66), Expect = 1.2
Identities = 17/130 (13%), Positives = 39/130 (30%), Gaps = 25/130 (19%)
Query: 6 SYWENYLLAY---TAGQGPIKDVY-NIGENPQF---RLEVGGGVGAVWILLTRHITQLED 58
Y+ +++ + ++ + + +F ++ W + L+
Sbjct: 471 QYFYSHI-GHHLKNIEHPERMTLFRMVFLDFRFLEQKIR---HDSTAWNASGSILNTLQQ 526
Query: 59 FKQNREYITVLVYKNEGKRVYYPYDPPPYLDGVR------INSPHY-LCKIILNENSSRK 111
K + YI N+ K LD + I S + L +I L
Sbjct: 527 LKFYKPYIC----DNDPKYERLVNA---ILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
Query: 112 YTLVVSQYEK 121
+ Q ++
Sbjct: 580 FEEAHKQVQR 589
>2qfe_A Calpain-7; C2-like domain, hydrolase, nuclear protein, protease,
thiol protease; 1.45A {Homo sapiens}
Length = 148
Score = 33.7 bits (77), Expect = 0.023
Identities = 24/146 (16%), Positives = 47/146 (32%), Gaps = 23/146 (15%)
Query: 136 PFRLEKRPQASW---SAGQGPIKDVYNIGENPQFRLEVGGGVGAVWILLTRHITQLEDFK 192
P+ L KR W SAG G NP ++ + + +L +
Sbjct: 20 PYTLSKRINGKWSGQSAG-GCGNFQETHKNNPIYQFHIEKT--------GPLLIELRGPR 70
Query: 193 QNREYITVLVYKNEGKRVYYPYDPPPYLDGVRINSPHY---LCKIILNENSSRKYTLVVS 249
Q + V P+ +R +S Y C + L S + ++ S
Sbjct: 71 Q--YSVGFEVVTVSTLGDPGPHGF------LRKSSGDYRCGFCYLELENIPSGIFNIIPS 122
Query: 250 QYEKMHTIYYTLRAYATCPFRLEKIE 275
+ + L + P ++ +++
Sbjct: 123 TFLPKQEGPFFLDFNSIIPIKITQLQ 148
Score = 28.3 bits (63), Expect = 1.7
Identities = 15/114 (13%), Positives = 35/114 (30%), Gaps = 19/114 (16%)
Query: 31 NPQFRLEVGGGVGAVWILLTRHITQLEDFKQNREYITVLVYKNEGKRVYYPYDPPPYLDG 90
NP ++ + + +L +Q + V P+
Sbjct: 49 NPIYQFHIEKT--------GPLLIELRGPRQ--YSVGFEVVTVSTLGDPGPHGF------ 92
Query: 91 VRINSPHY---LCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEK 141
+R +S Y C + L S + ++ S + + L + P ++ +
Sbjct: 93 LRKSSGDYRCGFCYLELENIPSGIFNIIPSTFLPKQEGPFFLDFNSIIPIKITQ 146
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.068
Identities = 32/151 (21%), Positives = 50/151 (33%), Gaps = 37/151 (24%)
Query: 18 GQGPIKDVYNIGENPQFRLEVGGGVGAVWILLTRHITQLEDF------KQNREYITVLVY 71
G G D+Y + + VW H F N +T+
Sbjct: 1630 GMG--MDLYK--TSKAAQ--------DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFG 1677
Query: 72 KNEGKRVYYPYDPPPY---LDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYT 128
+GKR+ Y + +DG + K I NE+S+ YT S+ + +T
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEK--IFKEI-NEHST-SYTF-RSEKGLLSATQFT 1732
Query: 129 -----LRAYATCPFR-LEKR---PQASWSAG 150
L A F L+ + P + AG
Sbjct: 1733 QPALTLMEKA--AFEDLKSKGLIPADATFAG 1761
Score = 33.1 bits (75), Expect = 0.10
Identities = 25/111 (22%), Positives = 37/111 (33%), Gaps = 25/111 (22%)
Query: 144 QASWSAGQGPIKDVYNIGENPQFRLEVGGGVGAVWILLTRHITQLEDF------KQNREY 197
Q S G G D+Y + + VW H F N
Sbjct: 1624 QGSQEQGMG--MDLYK--TSKAAQ--------DVWNRADNHFKDTYGFSILDIVINNPVN 1671
Query: 198 ITVLVYKNEGKRVYYPYDPPPY---LDGVRINSPHYLCKIILNENSSRKYT 245
+T+ +GKR+ Y + +DG + K I NE+S+ YT
Sbjct: 1672 LTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEK--IFKEI-NEHST-SYT 1718
>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD
motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15
PDB: 1omx_A* 1on6_A* 1on8_A*
Length = 293
Score = 28.1 bits (62), Expect = 3.3
Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 237 NENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKI 274
++++ +TL++ Y + + L Y P L K+
Sbjct: 23 SKSALDSFTLIMQTYNRTDLLLRLLNHYQAVPS-LHKV 59
Score = 27.0 bits (59), Expect = 8.5
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 105 NENSSRKYTLVVSQYEKMHTIYYTLRAYATCPF 137
++++ +TL++ Y + + L Y P
Sbjct: 23 SKSALDSFTLIMQTYNRTDLLLRLLNHYQAVPS 55
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor,
pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A
{Thermus thermophilus}
Length = 246
Score = 27.9 bits (63), Expect = 3.8
Identities = 8/24 (33%), Positives = 10/24 (41%), Gaps = 6/24 (25%)
Query: 123 HTIYY------TLRAYATCPFRLE 140
+Y+ TLRA P LE
Sbjct: 16 AFLYHGASVFTTLRAEGGRPLWLE 39
Score = 27.9 bits (63), Expect = 3.8
Identities = 8/24 (33%), Positives = 10/24 (41%), Gaps = 6/24 (25%)
Query: 255 HTIYY------TLRAYATCPFRLE 272
+Y+ TLRA P LE
Sbjct: 16 AFLYHGASVFTTLRAEGGRPLWLE 39
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.432
Gapped
Lambda K H
0.267 0.0554 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,595,468
Number of extensions: 270689
Number of successful extensions: 549
Number of sequences better than 10.0: 1
Number of HSP's gapped: 545
Number of HSP's successfully gapped: 25
Length of query: 283
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 191
Effective length of database: 4,133,061
Effective search space: 789414651
Effective search space used: 789414651
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.1 bits)