RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1440
(283 letters)
>d1df0a2 b.14.1.1 (A:356-514) Calpain large subunit, middle domain
(domain III) {Rat (Rattus norvegicus), M-type [TaxId:
10116]}
Length = 159
Score = 62.9 bits (152), Expect = 8e-13
Identities = 21/155 (13%), Positives = 46/155 (29%), Gaps = 26/155 (16%)
Query: 144 QASWSAGQ---GPIKDVYNIGENPQFRLEV----------GGGVGAVWILLTRHITQLED 190
+W G G NPQ+ +++ G + L+ +H +
Sbjct: 7 DGNWRRGSTAGGCRNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFLVGLIQKHRRRQRK 66
Query: 191 FKQNREYITVLVYKNEG----------KRVYYPYDPPPYLDGVRINSPHYLCKIILNENS 240
++ I +Y+ + ++ IN L + L
Sbjct: 67 MGEDMHTIGFGIYEVPEELTGQTNIHLSKNFFLTTRARERSDTFINLREVLNRFKLPPGE 126
Query: 241 SRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIE 275
Y LV S +E + +R ++ + ++
Sbjct: 127 ---YVLVPSTFEPHKNGDFCIRVFSEKKADYQTVD 158
Score = 61.0 bits (147), Expect = 3e-12
Identities = 22/147 (14%), Positives = 44/147 (29%), Gaps = 24/147 (16%)
Query: 15 YTAGQGPIKDVYNIGENPQFRLEV----------GGGVGAVWILLTRHITQLEDFKQNRE 64
TAG G NPQ+ +++ G + L+ +H + ++
Sbjct: 14 STAG-GCRNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFLVGLIQKHRRRQRKMGEDMH 72
Query: 65 YITVLVYKNEG----------KRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTL 114
I +Y+ + ++ IN L + L Y L
Sbjct: 73 TIGFGIYEVPEELTGQTNIHLSKNFFLTTRARERSDTFINLREVLNRFKLPPGE---YVL 129
Query: 115 VVSQYEKMHTIYYTLRAYATCPFRLEK 141
V S +E + +R ++ +
Sbjct: 130 VPSTFEPHKNGDFCIRVFSEKKADYQT 156
>d1qxpa3 b.14.1.1 (A:356-514) Calpain large subunit, middle domain
(domain III) {Rat (Rattus norvegicus), mu-type [TaxId:
10116]}
Length = 159
Score = 44.3 bits (104), Expect = 2e-06
Identities = 26/156 (16%), Positives = 49/156 (31%), Gaps = 27/156 (17%)
Query: 144 QASWSAGQ---GPIKDVYNIGENPQFRLEV------------GGGVGAVWILLTRHITQL 188
+ +W G G NPQF++ + G + L+ +H +
Sbjct: 7 EGTWRRGSTAGGCRNYPATFWVNPQFKIRLEEVDDADDYDSRESGCSFLLALMQKHRRRE 66
Query: 189 EDFKQNREYITVLVYKNEGKRVYYPYDPPPYL---------DGVRINSPHYLCKIILNEN 239
F ++ E I VY+ + P IN +I L
Sbjct: 67 RRFGRDMETIGFAVYQVPRELAGQPVHLKRDFFLANASRAQSEHFINLREVSNRIRLPPG 126
Query: 240 SSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIE 275
Y +V S +E + LR ++ ++++
Sbjct: 127 E---YIVVPSTFEPNKEGDFLLRFFSEKKAGTQELD 159
Score = 42.8 bits (100), Expect = 1e-05
Identities = 27/148 (18%), Positives = 46/148 (31%), Gaps = 25/148 (16%)
Query: 15 YTAGQGPIKDVYNIGENPQFRLEV------------GGGVGAVWILLTRHITQLEDFKQN 62
TAG G NPQF++ + G + L+ +H + F ++
Sbjct: 14 STAG-GCRNYPATFWVNPQFKIRLEEVDDADDYDSRESGCSFLLALMQKHRRRERRFGRD 72
Query: 63 REYITVLVYKNEGKRVYYPYDPPPYL---------DGVRINSPHYLCKIILNENSSRKYT 113
E I VY+ + P IN +I L Y
Sbjct: 73 METIGFAVYQVPRELAGQPVHLKRDFFLANASRAQSEHFINLREVSNRIRLPPGE---YI 129
Query: 114 LVVSQYEKMHTIYYTLRAYATCPFRLEK 141
+V S +E + LR ++ ++
Sbjct: 130 VVPSTFEPNKEGDFLLRFFSEKKAGTQE 157
>d2d0oa1 c.8.6.1 (A:93-254) Diol dehydratase-reactivating factor
large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}
Length = 162
Score = 27.0 bits (60), Expect = 1.8
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 28 IGENPQFRLEVGGGVGAVWILLTRHITQLEDFKQNREYITV 68
IG NP+ G G G +T +L + YI V
Sbjct: 7 IGHNPKTPGGAGLGTG-----ITITPQELLTRPADAPYILV 42
Score = 27.0 bits (60), Expect = 1.8
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 160 IGENPQFRLEVGGGVGAVWILLTRHITQLEDFKQNREYITV 200
IG NP+ G G G +T +L + YI V
Sbjct: 7 IGHNPKTPGGAGLGTG-----ITITPQELLTRPADAPYILV 42
>d1v30a_ d.269.1.1 (A:) Hypothetical protein PH0828 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 118
Score = 26.4 bits (58), Expect = 2.2
Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 7/104 (6%)
Query: 125 IYYTLRAYATCPFRLEKRPQASWSAGQGPIKDVYNIGENPQFRLEVGGGV-GAVWILLTR 183
+Y TLR L + + G+ I+ E + ++ G + V+ +
Sbjct: 6 VYGTLRK----GKPLHWYLKGAKFLGEDWIEGYQLYFEYLPYAVKGKGKLKVEVYEVDKE 61
Query: 184 HITQLEDFKQNREYITVLVYKNEGKRVYYPYDPPPYLDGVRINS 227
++ + + Y V V GK + + P G RI S
Sbjct: 62 TFERINEIEIGTGYRLVEVSTKFGKAFLWEWGSKP--RGKRIKS 103
Score = 26.0 bits (57), Expect = 2.7
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 42 VGAVWILLTRHITQLEDFKQNREYITVLVYKNEGKRVYYPYDPPPYLDGVRINS 95
V+ + ++ + + Y V V GK + + P G RI S
Sbjct: 52 KVEVYEVDKETFERINEIEIGTGYRLVEVSTKFGKAFLWEWGSKP--RGKRIKS 103
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 26.1 bits (56), Expect = 6.0
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 72 KNEGKRVYYPYDPPPYLDGVRINSPHY 98
KN+G + +D PPY +G + H
Sbjct: 43 KNKGNETFILHDGPPYANG----NLHM 65
Score = 26.1 bits (56), Expect = 6.0
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 204 KNEGKRVYYPYDPPPYLDGVRINSPHY 230
KN+G + +D PPY +G + H
Sbjct: 43 KNKGNETFILHDGPPYANG----NLHM 65
>d1gu3a_ b.18.1.14 (A:) Cellulose-binding domain of cellulase C
{Cellulomonas fimi [TaxId: 1708]}
Length = 142
Score = 25.1 bits (54), Expect = 7.6
Identities = 8/46 (17%), Positives = 13/46 (28%)
Query: 1 NKAVKSYWENYLLAYTAGQGPIKDVYNIGENPQFRLEVGGGVGAVW 46
+ A+ S +TA Q ++GG W
Sbjct: 85 SPALTSEPRQVTETFTASATYPATPAADDPEGQIAFQLGGFSADAW 130
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.139 0.432
Gapped
Lambda K H
0.267 0.0695 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,154,850
Number of extensions: 55700
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 17
Length of query: 283
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 199
Effective length of database: 1,254,276
Effective search space: 249600924
Effective search space used: 249600924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.9 bits)