BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14403
         (168 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q96LB3|IFT74_HUMAN Intraflagellar transport protein 74 homolog OS=Homo sapiens
           GN=IFT74 PE=2 SV=1
          Length = 600

 Score =  129 bits (324), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 67/144 (46%), Positives = 104/144 (72%), Gaps = 3/144 (2%)

Query: 6   RLVTQQGLSGLRTGSALRGPGFRQVQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEH 65
           R VTQQGL+G++TG+  +GP  RQ+ DK YY GLL+ KI +LT E+ +L++ IE+  +E+
Sbjct: 70  RPVTQQGLTGMKTGT--KGPQ-RQILDKSYYLGLLRSKISELTTEVNKLQKGIEMYNQEN 126

Query: 66  ATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRH 125
           + +L Y+KR + +A E+ ELQG+L+DYN+ +DK+NT T + ++  +Y  L+A ND ET+ 
Sbjct: 127 SVYLSYEKRAETLAVEIKELQGQLADYNMLVDKLNTNTEMEEVMNDYNMLKAQNDRETQS 186

Query: 126 LEEQFTERSKKQHQLHELEAEIEK 149
           L+  FTER  K+ Q+  +E EIE+
Sbjct: 187 LDVIFTERQAKEKQIRSVEEEIEQ 210


>sp|Q8BKE9|IFT74_MOUSE Intraflagellar transport protein 74 homolog OS=Mus musculus
           GN=Ift74 PE=1 SV=2
          Length = 600

 Score =  126 bits (316), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 63/137 (45%), Positives = 100/137 (72%), Gaps = 3/137 (2%)

Query: 4   SDRLVTQQGLSGLRTGSALRGPGFRQVQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAK 63
           +DR VTQQGLSG++TG  ++GP  RQ+ DK YY GLL+ KI +LT EI +L+++IE+  +
Sbjct: 68  ADRPVTQQGLSGMKTG--MKGPQ-RQILDKSYYLGLLRSKISELTTEINKLQKEIEMYNQ 124

Query: 64  EHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIET 123
           E++ +L Y+KR + +A E+ + QG+L+DYN+ +DK+NT T + ++  +Y  L+A ND ET
Sbjct: 125 ENSVYLSYEKRAETLAVEIKDFQGQLADYNMLVDKLNTNTEMEEVMSDYNMLKAQNDRET 184

Query: 124 RHLEEQFTERSKKQHQL 140
           + ++  FTER  K+ Q+
Sbjct: 185 QSMDVIFTERQAKEKQI 201


>sp|Q14149|MORC3_HUMAN MORC family CW-type zinc finger protein 3 OS=Homo sapiens GN=MORC3
           PE=1 SV=3
          Length = 939

 Score = 30.0 bits (66), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 18/114 (15%)

Query: 50  EITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIE 109
           EI RLK+Q   SA +H           E  +E+ E+  +L D    +DK + + +    E
Sbjct: 779 EIERLKKQ--CSALQHVKAECSQCSNNESKSEMDEMAVQLDDVFRQLDKCSIERDQYKSE 836

Query: 110 EEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMIDISMWIDIST 163
            E LE+                E+S+ + Q  EL+ E+E+L   +     D+ST
Sbjct: 837 VELLEM----------------EKSQIRSQCEELKTEVEQLKSTNQQTATDVST 874


>sp|Q6BRA6|ATG11_DEBHA Autophagy-related protein 11 OS=Debaryomyces hansenii (strain ATCC
           36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
           GN=ATG11 PE=3 SV=2
          Length = 1282

 Score = 29.6 bits (65), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 6/78 (7%)

Query: 74  RVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTER 133
           R+K+   ELT    KLS+ N T +K+     I  + ++   L+  ND + +H EE+  +R
Sbjct: 728 RLKKENNELTNENLKLSNTNRTNEKL-----IEALNKQISNLKTVNDDQNKHHEEKLRKR 782

Query: 134 -SKKQHQLHELEAEIEKL 150
            ++ Q  +  LE E++  
Sbjct: 783 DAENQQTITRLETELQAF 800


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.132    0.353 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,663,007
Number of Sequences: 539616
Number of extensions: 2119050
Number of successful extensions: 12518
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 551
Number of HSP's that attempted gapping in prelim test: 11823
Number of HSP's gapped (non-prelim): 1271
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 57 (26.6 bits)