Query psy14403
Match_columns 168
No_of_seqs 63 out of 65
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 18:59:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14403.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14403hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10146 zf-C4H2: Zinc finger- 96.2 0.36 7.8E-06 41.2 14.8 101 37-146 3-103 (230)
2 TIGR00606 rad50 rad50. This fa 95.6 0.55 1.2E-05 48.3 15.9 72 79-150 798-869 (1311)
3 KOG0933|consensus 95.6 1.3 2.8E-05 45.4 17.8 156 3-163 643-847 (1174)
4 TIGR02169 SMC_prok_A chromosom 95.6 1.1 2.3E-05 44.1 17.0 22 39-60 727-748 (1164)
5 PF14662 CCDC155: Coiled-coil 95.4 0.99 2.2E-05 38.0 14.1 96 40-151 13-108 (193)
6 TIGR02169 SMC_prok_A chromosom 95.4 1.4 3.1E-05 43.1 17.4 8 48-55 804-811 (1164)
7 PRK03918 chromosome segregatio 95.4 0.95 2.1E-05 43.7 15.9 61 40-100 167-227 (880)
8 PF07888 CALCOCO1: Calcium bin 95.3 0.81 1.7E-05 43.8 14.9 95 37-150 138-232 (546)
9 PF15619 Lebercilin: Ciliary p 95.3 1.2 2.6E-05 37.1 14.3 105 41-157 11-115 (194)
10 PHA02562 46 endonuclease subun 95.2 1 2.3E-05 41.1 14.9 55 37-91 301-355 (562)
11 PRK09039 hypothetical protein; 95.2 1.3 2.9E-05 39.5 15.1 121 28-151 60-185 (343)
12 TIGR00606 rad50 rad50. This fa 95.1 1.4 3.1E-05 45.3 16.9 119 28-149 970-1093(1311)
13 PHA02562 46 endonuclease subun 95.1 1.5 3.2E-05 40.2 15.5 87 41-129 298-384 (562)
14 PF00038 Filament: Intermediat 95.0 0.89 1.9E-05 38.8 13.2 111 43-155 19-141 (312)
15 PRK03918 chromosome segregatio 95.0 2 4.3E-05 41.6 16.7 112 40-151 312-432 (880)
16 PF03962 Mnd1: Mnd1 family; I 94.8 1.1 2.4E-05 36.9 12.6 95 36-138 70-167 (188)
17 PRK02224 chromosome segregatio 94.7 1.9 4.1E-05 41.9 16.0 81 68-150 309-396 (880)
18 PF08317 Spc7: Spc7 kinetochor 94.7 2.1 4.5E-05 37.7 14.8 101 39-144 146-250 (325)
19 PF13851 GAS: Growth-arrest sp 94.6 2.3 4.9E-05 35.4 16.0 106 33-138 15-128 (201)
20 PF06810 Phage_GP20: Phage min 94.6 0.64 1.4E-05 37.3 10.5 60 68-127 15-75 (155)
21 PRK02224 chromosome segregatio 94.6 2.6 5.6E-05 41.0 16.5 73 74-149 566-638 (880)
22 PRK10884 SH3 domain-containing 94.5 0.67 1.4E-05 38.9 10.7 85 39-159 90-174 (206)
23 PF04111 APG6: Autophagy prote 94.5 0.13 2.8E-06 45.4 6.8 92 52-163 12-103 (314)
24 COG1579 Zn-ribbon protein, pos 94.4 2.6 5.6E-05 36.5 14.3 87 65-151 44-137 (239)
25 PRK11637 AmiB activator; Provi 94.3 3.9 8.5E-05 37.0 18.1 32 121-152 167-198 (428)
26 PRK10884 SH3 domain-containing 94.3 1.7 3.7E-05 36.5 12.9 23 38-60 96-118 (206)
27 PF12325 TMF_TATA_bd: TATA ele 94.2 1.2 2.6E-05 34.6 11.0 94 22-118 10-111 (120)
28 KOG0250|consensus 94.2 2.2 4.8E-05 43.7 15.4 119 30-149 304-440 (1074)
29 KOG0977|consensus 94.2 2.4 5.3E-05 40.6 14.9 119 33-153 87-219 (546)
30 PF07200 Mod_r: Modifier of ru 93.7 0.93 2E-05 35.1 9.6 103 30-132 13-121 (150)
31 PF06785 UPF0242: Uncharacteri 93.6 3.7 8E-05 37.6 14.4 108 34-150 67-174 (401)
32 PF06160 EzrA: Septation ring 93.5 1.7 3.6E-05 41.1 12.6 118 36-155 314-431 (560)
33 PRK04778 septation ring format 93.2 2.2 4.8E-05 40.2 13.0 109 37-154 319-434 (569)
34 PRK11281 hypothetical protein; 93.0 2.5 5.4E-05 43.6 13.7 85 40-126 85-179 (1113)
35 COG1579 Zn-ribbon protein, pos 92.9 5.6 0.00012 34.4 14.2 73 72-149 88-160 (239)
36 KOG1029|consensus 92.9 4.6 9.9E-05 40.8 14.8 90 74-165 480-569 (1118)
37 PF08614 ATG16: Autophagy prot 92.8 1.9 4.2E-05 35.1 10.6 96 38-138 91-189 (194)
38 COG1196 Smc Chromosome segrega 92.7 6.6 0.00014 40.1 16.3 18 44-61 725-742 (1163)
39 COG1196 Smc Chromosome segrega 92.3 8.3 0.00018 39.5 16.3 30 70-99 734-763 (1163)
40 PF10186 Atg14: UV radiation r 92.3 5.9 0.00013 32.9 16.0 27 37-63 22-48 (302)
41 PF09726 Macoilin: Transmembra 92.0 9.3 0.0002 37.6 15.7 123 31-153 435-581 (697)
42 PF13514 AAA_27: AAA domain 91.8 6.1 0.00013 40.1 14.7 111 43-153 151-271 (1111)
43 PRK01156 chromosome segregatio 91.7 12 0.00027 36.6 16.3 113 40-152 303-444 (895)
44 PF07798 DUF1640: Protein of u 91.7 6.1 0.00013 31.8 13.5 96 48-159 57-158 (177)
45 PF15070 GOLGA2L5: Putative go 91.7 4.3 9.4E-05 39.3 12.9 44 37-90 24-67 (617)
46 KOG0996|consensus 91.6 5.9 0.00013 41.3 14.2 65 40-104 438-503 (1293)
47 PF05531 NPV_P10: Nucleopolyhe 91.5 2.2 4.8E-05 30.9 8.2 60 37-96 6-65 (75)
48 KOG0996|consensus 91.3 19 0.00042 37.8 17.4 81 71-151 825-920 (1293)
49 cd00632 Prefoldin_beta Prefold 91.3 4.6 0.0001 29.7 12.3 37 65-101 5-41 (105)
50 PRK11637 AmiB activator; Provi 90.9 7.7 0.00017 35.1 13.2 20 40-59 45-64 (428)
51 PF00261 Tropomyosin: Tropomyo 90.9 7.9 0.00017 32.5 12.4 102 42-155 1-109 (237)
52 KOG0995|consensus 90.8 13 0.00027 36.1 14.8 110 45-154 231-362 (581)
53 KOG4674|consensus 90.8 7.8 0.00017 42.0 14.6 97 39-147 1268-1369(1822)
54 PF08317 Spc7: Spc7 kinetochor 90.7 3.2 7E-05 36.5 10.3 113 37-155 179-293 (325)
55 KOG0250|consensus 90.7 13 0.00028 38.4 15.6 112 36-152 352-464 (1074)
56 PRK01156 chromosome segregatio 90.6 12 0.00027 36.7 15.2 48 43-90 644-691 (895)
57 TIGR03185 DNA_S_dndD DNA sulfu 90.6 3.6 7.8E-05 39.3 11.3 56 43-98 392-453 (650)
58 PF12795 MscS_porin: Mechanose 90.4 9.6 0.00021 31.9 14.5 87 40-128 43-138 (240)
59 cd00890 Prefoldin Prefoldin is 90.2 1.6 3.5E-05 32.3 6.9 105 46-150 3-127 (129)
60 PF10174 Cast: RIM-binding pro 90.1 13 0.00027 37.2 14.7 88 44-131 296-399 (775)
61 PRK04863 mukB cell division pr 90.0 19 0.0004 38.5 16.5 68 29-96 301-371 (1486)
62 COG1340 Uncharacterized archae 89.7 15 0.00032 32.9 15.9 103 46-150 135-247 (294)
63 KOG0995|consensus 89.7 11 0.00024 36.5 13.5 52 107-158 277-328 (581)
64 PRK03947 prefoldin subunit alp 89.4 8.1 0.00018 29.6 12.9 91 61-151 8-135 (140)
65 KOG2751|consensus 89.4 4.7 0.0001 37.8 10.6 58 104-161 177-234 (447)
66 PF04156 IncA: IncA protein; 89.0 10 0.00022 30.2 14.7 16 43-58 82-97 (191)
67 PRK04863 mukB cell division pr 89.0 31 0.00067 36.9 17.3 49 102-150 434-482 (1486)
68 PF14282 FlxA: FlxA-like prote 88.9 1.9 4E-05 32.4 6.4 56 41-96 18-74 (106)
69 TIGR01000 bacteriocin_acc bact 88.6 19 0.00041 32.8 14.7 15 46-60 169-183 (457)
70 PF09755 DUF2046: Uncharacteri 88.6 18 0.00039 32.5 16.0 60 31-90 131-202 (310)
71 PF15294 Leu_zip: Leucine zipp 88.5 15 0.00033 32.5 12.7 71 47-120 130-207 (278)
72 KOG0243|consensus 88.3 11 0.00024 38.8 13.1 71 24-101 393-469 (1041)
73 PF00261 Tropomyosin: Tropomyo 88.3 14 0.00031 30.9 14.0 80 70-151 138-217 (237)
74 PF05529 Bap31: B-cell recepto 88.2 7.5 0.00016 31.3 10.0 76 34-125 110-190 (192)
75 KOG0161|consensus 88.1 26 0.00057 38.5 16.3 112 40-153 1004-1119(1930)
76 KOG0161|consensus 87.9 29 0.00062 38.2 16.4 104 40-148 899-1002(1930)
77 PF06810 Phage_GP20: Phage min 87.8 4.8 0.0001 32.2 8.5 115 40-159 18-137 (155)
78 PF13870 DUF4201: Domain of un 87.8 12 0.00027 29.7 13.7 84 39-127 53-136 (177)
79 PF09726 Macoilin: Transmembra 87.7 17 0.00037 35.8 13.7 99 39-156 542-661 (697)
80 TIGR02338 gimC_beta prefoldin, 87.6 9.8 0.00021 28.3 12.9 88 63-150 7-107 (110)
81 PF10473 CENP-F_leu_zip: Leuci 87.6 13 0.00028 29.7 13.1 93 61-155 12-104 (140)
82 PF04156 IncA: IncA protein; 87.6 13 0.00027 29.6 13.1 26 105-130 125-150 (191)
83 PF14988 DUF4515: Domain of un 87.5 16 0.00034 30.6 14.4 29 32-60 1-29 (206)
84 PF08657 DASH_Spc34: DASH comp 87.3 2.9 6.3E-05 36.3 7.4 82 63-150 177-258 (259)
85 COG4717 Uncharacterized conser 87.0 26 0.00056 35.8 14.6 81 65-145 773-853 (984)
86 PF09728 Taxilin: Myosin-like 87.0 21 0.00046 31.6 16.2 123 34-156 156-304 (309)
87 KOG0804|consensus 86.7 30 0.00064 32.9 14.7 52 102-153 388-450 (493)
88 PF06005 DUF904: Protein of un 86.7 9.3 0.0002 27.2 9.3 48 37-87 6-53 (72)
89 KOG0994|consensus 86.7 37 0.0008 36.2 15.6 125 36-163 1620-1749(1758)
90 PF12325 TMF_TATA_bd: TATA ele 86.6 8.3 0.00018 29.9 8.9 94 37-153 18-111 (120)
91 PF02403 Seryl_tRNA_N: Seryl-t 86.4 5.1 0.00011 29.3 7.4 53 42-94 43-95 (108)
92 KOG1962|consensus 86.2 7 0.00015 33.4 9.0 25 108-132 177-201 (216)
93 PF06008 Laminin_I: Laminin Do 86.1 20 0.00043 30.4 16.3 117 36-154 46-169 (264)
94 PRK15422 septal ring assembly 86.1 5.5 0.00012 29.2 7.2 51 92-148 13-63 (79)
95 KOG0612|consensus 86.0 16 0.00035 38.4 12.8 47 45-91 468-519 (1317)
96 cd00584 Prefoldin_alpha Prefol 85.7 13 0.00028 27.9 11.5 85 66-150 6-127 (129)
97 PF15070 GOLGA2L5: Putative go 85.6 37 0.00081 33.0 16.5 64 38-101 83-150 (617)
98 PF09403 FadA: Adhesion protei 84.9 17 0.00037 28.5 13.2 85 44-128 22-107 (126)
99 PF10174 Cast: RIM-binding pro 84.3 48 0.001 33.3 16.6 72 28-99 315-390 (775)
100 TIGR03185 DNA_S_dndD DNA sulfu 84.2 40 0.00087 32.3 16.1 62 38-99 394-461 (650)
101 PF07106 TBPIP: Tat binding pr 84.2 19 0.00041 28.5 12.6 29 100-128 106-134 (169)
102 PF08738 Gon7: Gon7 family; I 84.0 5.9 0.00013 30.2 6.8 42 27-68 46-87 (103)
103 PF00038 Filament: Intermediat 84.0 26 0.00056 29.9 15.8 118 28-152 155-276 (312)
104 PF13851 GAS: Growth-arrest sp 84.0 23 0.0005 29.3 13.8 56 39-94 59-114 (201)
105 PRK05431 seryl-tRNA synthetase 83.7 6.6 0.00014 36.0 8.4 59 40-98 40-98 (425)
106 PRK09039 hypothetical protein; 83.5 33 0.00071 30.7 15.0 52 40-94 44-95 (343)
107 PRK04778 septation ring format 82.8 44 0.00095 31.7 15.1 62 38-102 278-339 (569)
108 PF02388 FemAB: FemAB family; 82.7 14 0.0003 33.5 9.9 70 30-99 214-299 (406)
109 PF07439 DUF1515: Protein of u 82.7 13 0.00028 28.9 8.3 60 37-96 3-63 (112)
110 TIGR02680 conserved hypothetic 82.5 70 0.0015 33.7 18.1 86 70-156 294-379 (1353)
111 PF04799 Fzo_mitofusin: fzo-li 82.3 7.1 0.00015 32.3 7.2 45 43-87 121-165 (171)
112 KOG0018|consensus 82.3 25 0.00054 36.6 12.3 67 81-152 357-423 (1141)
113 PF04849 HAP1_N: HAP1 N-termin 81.8 39 0.00084 30.4 13.6 108 31-153 156-263 (306)
114 PF02388 FemAB: FemAB family; 81.7 9.8 0.00021 34.4 8.6 62 32-93 239-300 (406)
115 KOG4674|consensus 81.4 42 0.00092 36.7 14.0 88 42-129 298-410 (1822)
116 TIGR02231 conserved hypothetic 81.4 32 0.00069 31.9 12.0 50 102-151 123-172 (525)
117 PF01920 Prefoldin_2: Prefoldi 81.2 17 0.00037 25.8 12.3 84 66-150 5-102 (106)
118 KOG0964|consensus 81.2 74 0.0016 33.2 15.8 108 37-148 687-823 (1200)
119 PF04420 CHD5: CHD5-like prote 80.5 5 0.00011 32.1 5.7 62 38-99 36-99 (161)
120 PF13514 AAA_27: AAA domain 80.2 74 0.0016 32.5 16.0 42 103-144 889-930 (1111)
121 PF07926 TPR_MLP1_2: TPR/MLP1/ 80.1 25 0.00053 27.0 9.4 22 130-151 97-118 (132)
122 PF07106 TBPIP: Tat binding pr 80.1 27 0.00059 27.6 10.6 54 37-91 81-134 (169)
123 PF08826 DMPK_coil: DMPK coile 79.9 17 0.00038 25.1 7.5 46 106-151 14-59 (61)
124 PF12128 DUF3584: Protein of u 79.7 77 0.0017 32.9 15.0 29 67-95 772-803 (1201)
125 smart00787 Spc7 Spc7 kinetocho 79.7 44 0.00096 29.7 15.5 28 65-92 171-198 (312)
126 PF07246 Phlebovirus_NSM: Phle 79.6 41 0.00088 29.7 11.3 39 72-110 167-205 (264)
127 KOG3564|consensus 79.3 18 0.0004 34.8 9.7 71 65-151 34-104 (604)
128 PF05667 DUF812: Protein of un 79.3 64 0.0014 31.3 15.9 56 37-95 330-385 (594)
129 PRK13729 conjugal transfer pil 79.3 6.8 0.00015 37.1 6.9 60 30-89 57-120 (475)
130 KOG0977|consensus 79.2 49 0.0011 32.0 12.6 78 74-151 107-196 (546)
131 KOG4673|consensus 78.2 49 0.0011 33.4 12.4 93 36-131 857-957 (961)
132 KOG3433|consensus 78.2 42 0.0009 28.5 12.1 101 28-132 74-174 (203)
133 PF04111 APG6: Autophagy prote 78.1 49 0.0011 29.3 12.9 110 30-155 22-137 (314)
134 PF07352 Phage_Mu_Gam: Bacteri 78.1 13 0.00028 29.1 7.2 50 42-93 10-59 (149)
135 PLN02939 transferase, transfer 78.1 88 0.0019 32.3 14.6 72 30-101 221-292 (977)
136 PLN02678 seryl-tRNA synthetase 77.5 14 0.00031 34.5 8.4 54 40-93 45-98 (448)
137 cd00890 Prefoldin Prefoldin is 77.3 21 0.00045 26.3 7.8 89 65-153 5-123 (129)
138 PF05701 WEMBL: Weak chloropla 77.1 66 0.0014 30.3 14.8 44 51-94 220-263 (522)
139 TIGR00414 serS seryl-tRNA synt 77.1 15 0.00032 33.6 8.3 58 40-97 42-100 (418)
140 TIGR01005 eps_transp_fam exopo 76.8 75 0.0016 30.7 14.1 54 47-100 199-268 (754)
141 TIGR01000 bacteriocin_acc bact 76.2 62 0.0013 29.5 16.2 72 31-102 90-201 (457)
142 PF07544 Med9: RNA polymerase 76.1 18 0.00039 26.0 6.9 61 93-153 10-74 (83)
143 PF09730 BicD: Microtubule-ass 75.0 94 0.002 31.0 15.2 121 41-164 47-188 (717)
144 TIGR02231 conserved hypothetic 74.9 26 0.00055 32.6 9.4 42 111-152 125-166 (525)
145 KOG4360|consensus 74.7 67 0.0015 31.2 12.0 38 35-72 159-196 (596)
146 PF03961 DUF342: Protein of un 74.6 41 0.00089 30.8 10.5 22 40-61 332-353 (451)
147 PRK09841 cryptic autophosphory 74.5 73 0.0016 31.0 12.7 26 74-99 305-330 (726)
148 PF03961 DUF342: Protein of un 74.1 32 0.00068 31.5 9.6 62 38-99 337-408 (451)
149 PRK09343 prefoldin subunit bet 74.0 37 0.00081 25.9 13.3 88 64-151 12-112 (121)
150 COG2433 Uncharacterized conser 73.8 25 0.00054 34.5 9.1 91 45-144 418-508 (652)
151 KOG0999|consensus 73.7 98 0.0021 30.6 14.3 25 43-67 9-33 (772)
152 TIGR00293 prefoldin, archaeal 73.6 35 0.00076 25.5 11.8 34 66-99 6-39 (126)
153 PF03962 Mnd1: Mnd1 family; I 73.5 32 0.00069 28.3 8.7 71 76-152 79-149 (188)
154 KOG0804|consensus 73.5 87 0.0019 29.9 13.0 41 113-153 417-457 (493)
155 smart00338 BRLZ basic region l 73.4 18 0.00039 24.3 6.0 36 34-69 25-60 (65)
156 TIGR03007 pepcterm_ChnLen poly 73.4 73 0.0016 29.0 11.8 23 107-129 352-374 (498)
157 PF10158 LOH1CR12: Tumour supp 72.6 45 0.00097 26.2 10.4 82 23-104 16-118 (131)
158 PF03148 Tektin: Tektin family 72.5 50 0.0011 29.8 10.4 103 30-149 52-162 (384)
159 COG3096 MukB Uncharacterized p 72.3 13 0.00027 38.0 6.9 50 52-101 362-411 (1480)
160 KOG0964|consensus 71.9 83 0.0018 32.9 12.5 104 43-148 231-338 (1200)
161 KOG4643|consensus 71.5 63 0.0014 33.8 11.6 41 47-87 203-243 (1195)
162 PF14257 DUF4349: Domain of un 71.4 31 0.00067 29.0 8.4 77 28-105 125-201 (262)
163 PF09738 DUF2051: Double stran 71.3 75 0.0016 28.3 11.0 115 35-152 112-247 (302)
164 COG0419 SbcC ATPase involved i 71.2 1.2E+02 0.0025 30.4 15.4 25 31-55 522-546 (908)
165 KOG0018|consensus 71.0 86 0.0019 32.9 12.5 111 42-152 227-352 (1141)
166 TIGR01843 type_I_hlyD type I s 70.9 70 0.0015 27.8 15.4 18 41-58 80-97 (423)
167 PF05384 DegS: Sensor protein 70.8 56 0.0012 26.6 13.8 83 74-157 49-131 (159)
168 TIGR03752 conj_TIGR03752 integ 70.5 36 0.00077 32.4 9.2 61 36-96 67-139 (472)
169 PF14817 HAUS5: HAUS augmin-li 70.2 90 0.0019 30.7 12.1 101 61-161 306-412 (632)
170 smart00787 Spc7 Spc7 kinetocho 70.1 80 0.0017 28.1 15.3 54 38-91 175-229 (312)
171 PF15254 CCDC14: Coiled-coil d 69.9 1.1E+02 0.0023 31.2 12.6 108 28-135 334-473 (861)
172 PF10186 Atg14: UV radiation r 69.8 63 0.0014 26.8 17.0 87 39-127 17-108 (302)
173 PF08614 ATG16: Autophagy prot 69.8 51 0.0011 26.8 9.0 63 69-147 112-174 (194)
174 TIGR01010 BexC_CtrB_KpsE polys 69.4 78 0.0017 27.7 11.7 26 67-92 171-196 (362)
175 TIGR01843 type_I_hlyD type I s 69.4 76 0.0016 27.5 15.0 28 70-97 162-189 (423)
176 PF05701 WEMBL: Weak chloropla 69.4 1E+02 0.0022 29.0 15.8 21 41-61 171-191 (522)
177 PF10359 Fmp27_WPPW: RNA pol I 69.2 22 0.00047 33.1 7.5 62 37-99 165-226 (475)
178 PF12718 Tropomyosin_1: Tropom 69.0 55 0.0012 25.8 15.1 33 68-100 37-69 (143)
179 KOG0963|consensus 69.0 43 0.00094 32.9 9.6 65 47-117 290-358 (629)
180 KOG1029|consensus 69.0 54 0.0012 33.6 10.4 101 41-144 415-520 (1118)
181 PF06160 EzrA: Septation ring 68.9 1.1E+02 0.0023 29.1 15.2 114 39-154 310-423 (560)
182 COG4942 Membrane-bound metallo 68.8 73 0.0016 29.9 10.7 84 43-131 39-126 (420)
183 TIGR01554 major_cap_HK97 phage 68.1 38 0.00082 30.0 8.5 63 38-100 2-68 (378)
184 COG1340 Uncharacterized archae 67.1 95 0.0021 27.8 15.6 104 41-149 150-253 (294)
185 PF05911 DUF869: Plant protein 66.6 1.5E+02 0.0032 29.9 13.7 53 43-95 590-646 (769)
186 PF10146 zf-C4H2: Zinc finger- 66.3 84 0.0018 26.9 13.0 83 68-150 10-100 (230)
187 PF12128 DUF3584: Protein of u 66.2 1.7E+02 0.0037 30.4 17.3 30 40-69 311-340 (1201)
188 PF10224 DUF2205: Predicted co 65.8 28 0.00061 25.4 6.0 48 75-131 18-65 (80)
189 PLN02320 seryl-tRNA synthetase 65.3 35 0.00075 32.5 8.1 35 101-135 128-162 (502)
190 PF12777 MT: Microtubule-bindi 64.4 50 0.0011 29.2 8.5 84 65-150 227-310 (344)
191 PRK13729 conjugal transfer pil 64.3 17 0.00037 34.5 5.8 50 105-154 71-120 (475)
192 PF05557 MAD: Mitotic checkpoi 64.2 2.2 4.8E-05 41.2 0.0 117 37-153 259-386 (722)
193 TIGR03007 pepcterm_ChnLen poly 64.0 1.2E+02 0.0025 27.7 13.2 27 73-99 204-230 (498)
194 PF05377 FlaC_arch: Flagella a 63.9 44 0.00096 22.9 6.9 51 43-103 1-51 (55)
195 TIGR02894 DNA_bind_RsfA transc 62.9 38 0.00082 27.9 6.9 9 91-99 140-148 (161)
196 TIGR02209 ftsL_broad cell divi 62.4 40 0.00087 23.3 6.2 19 43-61 25-43 (85)
197 TIGR02890 spore_yteA sporulati 62.3 67 0.0014 25.9 8.2 70 32-103 2-85 (159)
198 PRK11020 hypothetical protein; 61.7 38 0.00082 26.6 6.4 42 47-88 3-53 (118)
199 PF02183 HALZ: Homeobox associ 61.6 42 0.0009 21.8 5.7 39 108-146 3-41 (45)
200 PF06120 Phage_HK97_TLTM: Tail 61.6 1.2E+02 0.0026 27.1 10.9 41 61-101 76-116 (301)
201 TIGR01005 eps_transp_fam exopo 61.5 1.6E+02 0.0035 28.5 12.1 51 74-130 346-396 (754)
202 TIGR03017 EpsF chain length de 61.4 1.2E+02 0.0026 27.0 12.8 16 39-54 258-273 (444)
203 PF10205 KLRAQ: Predicted coil 61.3 48 0.001 25.3 6.8 31 118-148 41-71 (102)
204 COG3074 Uncharacterized protei 61.0 58 0.0013 23.7 6.8 44 47-90 23-70 (79)
205 PF13166 AAA_13: AAA domain 60.7 1.6E+02 0.0034 28.1 14.4 24 37-60 324-347 (712)
206 PF01576 Myosin_tail_1: Myosin 60.5 2.8 6.1E-05 41.7 0.0 111 38-150 387-501 (859)
207 PRK10636 putative ABC transpor 60.4 77 0.0017 30.3 9.6 75 68-144 558-632 (638)
208 PF05911 DUF869: Plant protein 60.3 1.9E+02 0.0042 29.1 13.6 27 71-97 615-641 (769)
209 PF01576 Myosin_tail_1: Myosin 60.2 2.9 6.3E-05 41.7 0.0 70 70-141 177-246 (859)
210 PF07926 TPR_MLP1_2: TPR/MLP1/ 59.9 76 0.0017 24.3 14.7 24 78-101 57-80 (132)
211 PRK10361 DNA recombination pro 59.4 1.6E+02 0.0036 27.9 16.1 29 69-97 63-91 (475)
212 KOG4403|consensus 58.9 1.7E+02 0.0038 28.1 12.6 107 48-154 241-377 (575)
213 PRK13922 rod shape-determining 58.8 94 0.002 26.3 9.0 57 36-92 35-95 (276)
214 PRK13182 racA polar chromosome 58.8 77 0.0017 26.0 8.1 34 38-71 88-121 (175)
215 PF09730 BicD: Microtubule-ass 58.7 2E+02 0.0044 28.8 15.5 106 38-152 30-142 (717)
216 COG5509 Uncharacterized small 58.6 32 0.0007 24.2 5.0 39 28-66 16-56 (65)
217 PF08946 Osmo_CC: Osmosensory 58.6 12 0.00027 24.8 2.7 23 66-88 12-34 (46)
218 COG4477 EzrA Negative regulato 57.9 1.9E+02 0.0041 28.2 13.6 114 36-155 317-434 (570)
219 TIGR00634 recN DNA repair prot 57.8 1.7E+02 0.0037 27.6 11.7 37 80-118 301-337 (563)
220 PLN03085 nucleobase:cation sym 57.7 30 0.00066 29.8 5.7 54 44-97 148-203 (221)
221 PF11932 DUF3450: Protein of u 57.7 1.1E+02 0.0025 25.6 13.7 109 38-158 38-151 (251)
222 PF06698 DUF1192: Protein of u 57.5 32 0.00069 23.8 4.8 33 34-66 20-52 (59)
223 PRK00591 prfA peptide chain re 57.4 1.6E+02 0.0034 27.0 11.1 57 40-101 4-60 (359)
224 TIGR03545 conserved hypothetic 57.3 1.9E+02 0.004 27.9 12.7 73 86-158 190-264 (555)
225 PRK10698 phage shock protein P 56.9 1E+02 0.0022 25.8 8.8 56 91-149 14-70 (222)
226 PF10805 DUF2730: Protein of u 56.5 64 0.0014 24.1 6.8 57 34-101 21-79 (106)
227 PF14389 Lzipper-MIP1: Leucine 56.5 52 0.0011 23.9 6.1 15 76-90 11-25 (88)
228 PF10805 DUF2730: Protein of u 56.3 82 0.0018 23.5 10.3 56 74-129 36-91 (106)
229 PF14362 DUF4407: Domain of un 56.2 1.3E+02 0.0028 25.8 13.2 29 71-99 133-161 (301)
230 PF10168 Nup88: Nuclear pore c 56.2 2.2E+02 0.0047 28.3 15.0 33 67-99 559-591 (717)
231 PF04350 PilO: Pilus assembly 56.1 14 0.0003 27.6 3.1 44 46-89 3-46 (144)
232 PF13870 DUF4201: Domain of un 55.9 1E+02 0.0022 24.5 14.7 118 33-152 4-126 (177)
233 PF06248 Zw10: Centromere/kine 55.8 1.9E+02 0.004 27.4 14.0 53 40-92 12-65 (593)
234 TIGR02977 phageshock_pspA phag 55.7 1.2E+02 0.0026 25.1 13.9 47 39-88 28-74 (219)
235 PF12018 DUF3508: Domain of un 55.2 1.4E+02 0.003 25.8 11.3 84 74-157 10-99 (281)
236 COG2433 Uncharacterized conser 55.1 2.3E+02 0.0049 28.2 13.4 25 69-93 425-449 (652)
237 PF04859 DUF641: Plant protein 55.1 21 0.00046 28.2 4.1 73 46-121 49-126 (131)
238 KOG0612|consensus 54.9 3E+02 0.0065 29.6 16.5 55 40-97 506-560 (1317)
239 KOG0963|consensus 54.9 2.2E+02 0.0049 28.1 16.2 61 39-99 193-275 (629)
240 PF10498 IFT57: Intra-flagella 54.9 1.7E+02 0.0036 26.6 12.2 53 74-128 267-319 (359)
241 PF00170 bZIP_1: bZIP transcri 54.8 61 0.0013 21.6 6.1 30 67-96 27-56 (64)
242 TIGR00020 prfB peptide chain r 54.4 1.8E+02 0.0038 26.7 10.7 17 39-55 4-20 (364)
243 PF12718 Tropomyosin_1: Tropom 54.4 1.1E+02 0.0023 24.2 14.9 49 40-91 19-67 (143)
244 KOG0994|consensus 54.2 1.3E+02 0.0028 32.4 10.3 117 44-161 1173-1304(1758)
245 COG5244 NIP100 Dynactin comple 54.1 62 0.0013 31.4 7.6 55 37-91 224-285 (669)
246 PRK06975 bifunctional uroporph 54.1 1.9E+02 0.0041 28.1 11.2 52 40-91 344-396 (656)
247 COG4026 Uncharacterized protei 54.0 1.2E+02 0.0026 26.7 8.8 60 30-99 130-189 (290)
248 PRK11546 zraP zinc resistance 53.9 46 0.00099 26.8 5.9 23 72-94 88-110 (143)
249 PF03357 Snf7: Snf7; InterPro 53.2 82 0.0018 24.0 7.1 56 40-95 6-63 (171)
250 PF01920 Prefoldin_2: Prefoldi 53.2 78 0.0017 22.3 8.9 41 48-88 4-44 (106)
251 TIGR01010 BexC_CtrB_KpsE polys 53.2 1.6E+02 0.0034 25.8 11.5 79 46-124 174-263 (362)
252 PF04977 DivIC: Septum formati 53.1 67 0.0015 21.5 7.2 11 44-54 26-36 (80)
253 PF13812 PPR_3: Pentatricopept 53.0 35 0.00075 18.7 3.8 30 90-119 2-31 (34)
254 KOG0810|consensus 52.9 1.7E+02 0.0036 26.1 10.6 30 41-70 39-68 (297)
255 PF04728 LPP: Lipoprotein leuc 52.9 73 0.0016 21.9 7.6 48 42-99 3-50 (56)
256 PF03670 UPF0184: Uncharacteri 52.7 84 0.0018 23.2 6.6 17 114-130 44-60 (83)
257 KOG1655|consensus 52.6 1.5E+02 0.0033 25.5 9.1 63 69-131 22-84 (218)
258 KOG0933|consensus 52.4 3.1E+02 0.0067 29.0 15.0 61 42-102 787-851 (1174)
259 KOG1899|consensus 52.4 74 0.0016 31.9 8.0 47 39-85 171-217 (861)
260 PRK15422 septal ring assembly 52.1 92 0.002 22.8 8.4 51 39-89 8-69 (79)
261 PRK03947 prefoldin subunit alp 51.6 1.1E+02 0.0023 23.4 9.5 20 39-58 17-36 (140)
262 PF02994 Transposase_22: L1 tr 51.5 59 0.0013 29.4 6.9 9 33-41 42-50 (370)
263 PTZ00464 SNF-7-like protein; P 51.3 1.5E+02 0.0032 25.0 16.5 117 28-148 14-174 (211)
264 COG3879 Uncharacterized protei 51.3 42 0.00092 29.3 5.7 27 67-93 58-84 (247)
265 PF06103 DUF948: Bacterial pro 51.1 85 0.0018 22.1 8.1 40 105-144 49-88 (90)
266 PHA02047 phage lambda Rz1-like 51.0 85 0.0018 24.0 6.6 34 69-102 30-63 (101)
267 KOG2077|consensus 50.8 1.3E+02 0.0028 30.0 9.3 85 64-157 292-376 (832)
268 PRK10920 putative uroporphyrin 50.7 2.1E+02 0.0045 26.5 12.1 67 33-101 53-127 (390)
269 PF06005 DUF904: Protein of un 50.6 88 0.0019 22.1 10.8 66 67-148 5-70 (72)
270 PF13166 AAA_13: AAA domain 50.4 2.3E+02 0.005 26.9 16.5 66 34-99 276-348 (712)
271 PRK10803 tol-pal system protei 50.3 75 0.0016 27.3 7.1 25 38-62 57-81 (263)
272 COG4913 Uncharacterized protei 50.2 3.1E+02 0.0067 28.3 15.1 34 2-36 575-608 (1104)
273 TIGR03017 EpsF chain length de 50.1 1.9E+02 0.0041 25.8 12.0 18 46-63 182-199 (444)
274 COG3883 Uncharacterized protei 50.1 1.8E+02 0.0039 25.7 13.0 49 40-91 43-91 (265)
275 PF03904 DUF334: Domain of unk 49.9 1.7E+02 0.0038 25.4 13.9 109 50-163 44-156 (230)
276 PLN02678 seryl-tRNA synthetase 49.9 63 0.0014 30.2 6.9 19 45-63 43-61 (448)
277 COG3074 Uncharacterized protei 49.6 1E+02 0.0022 22.5 7.2 40 107-146 22-61 (79)
278 COG2262 HflX GTPases [General 49.3 43 0.00094 31.3 5.7 42 21-65 146-187 (411)
279 KOG3478|consensus 49.3 1.3E+02 0.0028 23.7 12.9 88 67-157 13-109 (120)
280 PRK10929 putative mechanosensi 49.2 3.4E+02 0.0074 28.6 14.0 29 68-96 104-132 (1109)
281 PF08826 DMPK_coil: DMPK coile 48.8 88 0.0019 21.6 9.0 55 45-99 4-58 (61)
282 PF01496 V_ATPase_I: V-type AT 48.8 5.8 0.00013 38.6 0.0 86 67-152 25-116 (759)
283 TIGR02977 phageshock_pspA phag 48.6 1.6E+02 0.0034 24.4 8.7 29 129-157 90-118 (219)
284 KOG0962|consensus 48.1 3.8E+02 0.0083 28.8 13.7 66 41-106 236-301 (1294)
285 KOG0980|consensus 48.0 3.4E+02 0.0074 28.2 14.5 54 46-99 463-520 (980)
286 PF09763 Sec3_C: Exocyst compl 47.9 2E+02 0.0044 27.8 10.3 50 69-120 33-82 (701)
287 PF04728 LPP: Lipoprotein leuc 47.2 92 0.002 21.4 6.0 47 74-129 4-50 (56)
288 KOG0971|consensus 47.0 3.7E+02 0.0081 28.3 13.8 56 41-99 388-443 (1243)
289 PF05622 HOOK: HOOK protein; 46.5 6.6 0.00014 38.0 0.0 83 56-144 315-404 (713)
290 PRK10636 putative ABC transpor 46.4 59 0.0013 31.1 6.3 24 68-91 565-588 (638)
291 PRK10869 recombination and rep 46.4 2.7E+02 0.0058 26.5 11.6 39 81-121 297-335 (553)
292 TIGR00634 recN DNA repair prot 45.9 2.6E+02 0.0057 26.3 11.9 70 67-141 267-339 (563)
293 KOG0249|consensus 45.6 2E+02 0.0044 29.3 9.8 39 76-116 219-257 (916)
294 PF04012 PspA_IM30: PspA/IM30 45.6 1.6E+02 0.0036 23.9 16.9 109 30-147 21-135 (221)
295 PF14988 DUF4515: Domain of un 45.6 1.8E+02 0.0039 24.3 16.0 48 105-152 151-198 (206)
296 PRK06798 fliD flagellar cappin 45.6 68 0.0015 29.7 6.4 53 37-89 374-427 (440)
297 KOG0288|consensus 45.5 1.7E+02 0.0037 27.8 8.9 54 41-94 12-69 (459)
298 PF07334 IFP_35_N: Interferon- 45.4 44 0.00095 24.3 4.1 28 126-153 2-29 (76)
299 PF09728 Taxilin: Myosin-like 45.4 2.2E+02 0.0047 25.2 12.1 55 37-101 24-78 (309)
300 PF07195 FliD_C: Flagellar hoo 45.3 90 0.0019 26.0 6.6 27 38-64 189-215 (239)
301 PF15397 DUF4618: Domain of un 45.1 2.2E+02 0.0047 25.1 15.0 121 34-154 73-223 (258)
302 TIGR02680 conserved hypothetic 44.9 4.1E+02 0.0089 28.2 16.3 108 40-147 849-965 (1353)
303 PF11500 Cut12: Spindle pole b 44.6 1.7E+02 0.0037 23.8 8.7 23 33-55 68-90 (152)
304 PF15397 DUF4618: Domain of un 44.5 2.2E+02 0.0048 25.0 11.1 55 77-131 85-148 (258)
305 PF08838 DUF1811: Protein of u 44.4 53 0.0011 25.2 4.6 33 44-76 9-43 (102)
306 PF09340 NuA4: Histone acetylt 44.4 35 0.00076 24.5 3.5 29 124-152 2-30 (80)
307 PRK15396 murein lipoprotein; P 44.2 1.1E+02 0.0023 22.2 6.0 19 111-129 54-72 (78)
308 PF04880 NUDE_C: NUDE protein, 44.0 41 0.00088 27.6 4.3 42 105-150 2-43 (166)
309 PF07888 CALCOCO1: Calcium bin 44.0 3.1E+02 0.0068 26.6 16.4 17 75-91 201-217 (546)
310 PRK13922 rod shape-determining 43.8 2E+02 0.0043 24.3 8.6 41 50-90 70-110 (276)
311 PRK11519 tyrosine kinase; Prov 43.6 3.2E+02 0.007 26.6 13.0 25 73-97 304-328 (719)
312 COG3879 Uncharacterized protei 43.4 97 0.0021 27.1 6.7 12 105-116 138-149 (247)
313 TIGR00570 cdk7 CDK-activating 43.3 2.5E+02 0.0054 25.3 9.4 45 99-143 109-160 (309)
314 PF04871 Uso1_p115_C: Uso1 / p 43.3 1.6E+02 0.0034 23.0 9.5 82 67-150 28-110 (136)
315 PF14335 DUF4391: Domain of un 43.3 73 0.0016 26.4 5.8 44 45-89 178-221 (221)
316 PF05557 MAD: Mitotic checkpoi 43.2 3.2E+02 0.007 26.6 13.2 25 38-62 506-530 (722)
317 KOG0971|consensus 42.9 4.3E+02 0.0093 27.9 15.5 34 29-62 232-268 (1243)
318 PF09304 Cortex-I_coil: Cortex 42.7 1.6E+02 0.0034 22.8 10.3 20 77-96 13-32 (107)
319 KOG2077|consensus 42.6 3.6E+02 0.0079 27.0 10.9 49 40-91 327-375 (832)
320 PF04799 Fzo_mitofusin: fzo-li 42.5 1.1E+02 0.0024 25.3 6.6 58 32-92 106-163 (171)
321 PF08537 NBP1: Fungal Nap bind 42.4 1E+02 0.0022 28.0 6.8 49 37-95 177-225 (323)
322 PF12761 End3: Actin cytoskele 42.3 2.1E+02 0.0046 24.2 12.1 92 30-126 91-183 (195)
323 PF15619 Lebercilin: Ciliary p 42.2 2E+02 0.0043 23.9 13.6 48 45-95 64-111 (194)
324 PF07544 Med9: RNA polymerase 42.2 89 0.0019 22.3 5.4 22 29-50 22-43 (83)
325 PF09789 DUF2353: Uncharacteri 42.1 2.6E+02 0.0057 25.2 13.1 104 40-150 4-112 (319)
326 PF14735 HAUS4: HAUS augmin-li 41.7 2.3E+02 0.0049 24.4 8.6 55 67-127 179-233 (238)
327 PF14257 DUF4349: Domain of un 41.7 1E+02 0.0022 25.9 6.5 70 73-152 105-183 (262)
328 PF05852 DUF848: Gammaherpesvi 41.6 1.5E+02 0.0032 24.0 7.1 50 40-92 59-108 (146)
329 PF08928 DUF1910: Domain of un 41.5 1.4E+02 0.003 21.9 6.7 74 30-118 4-79 (117)
330 KOG4593|consensus 41.4 85 0.0018 31.3 6.6 64 36-99 553-619 (716)
331 TIGR02420 dksA RNA polymerase- 41.4 1.5E+02 0.0032 22.1 8.8 72 32-103 5-79 (110)
332 TIGR01069 mutS2 MutS2 family p 41.1 3.8E+02 0.0082 26.8 13.1 30 28-57 497-526 (771)
333 TIGR02132 phaR_Bmeg polyhydrox 40.6 2.3E+02 0.0049 24.0 10.6 51 84-134 53-103 (189)
334 TIGR00019 prfA peptide chain r 40.3 2.6E+02 0.0056 25.6 9.2 82 69-150 3-94 (360)
335 PRK05561 DNA topoisomerase IV 40.2 1.5E+02 0.0033 29.4 8.3 31 33-63 420-451 (742)
336 PF08599 Nbs1_C: DNA damage re 40.1 55 0.0012 23.2 3.8 38 94-131 27-64 (65)
337 smart00806 AIP3 Actin interact 40.1 3.3E+02 0.0071 25.7 13.2 113 36-149 174-314 (426)
338 PF14712 Snapin_Pallidin: Snap 40.0 1.3E+02 0.0028 21.1 9.4 59 36-94 22-85 (92)
339 PF08549 SWI-SNF_Ssr4: Fungal 39.8 42 0.0009 33.2 4.3 55 36-90 365-429 (669)
340 PF07716 bZIP_2: Basic region 39.8 97 0.0021 20.1 4.9 17 42-58 32-48 (54)
341 COG5185 HEC1 Protein involved 39.8 3.7E+02 0.008 26.3 14.8 110 46-157 268-401 (622)
342 PF10267 Tmemb_cc2: Predicted 39.6 2.2E+02 0.0049 26.4 8.8 36 68-103 50-85 (395)
343 COG1382 GimC Prefoldin, chaper 39.5 75 0.0016 24.9 4.9 40 117-156 13-52 (119)
344 PRK08147 flgK flagellar hook-a 39.4 3.3E+02 0.0072 25.6 11.1 71 39-115 132-205 (547)
345 PF05700 BCAS2: Breast carcino 38.9 2.3E+02 0.005 23.6 9.2 68 71-152 134-210 (221)
346 PF02183 HALZ: Homeobox associ 38.7 1E+02 0.0022 19.9 4.7 32 104-135 6-37 (45)
347 KOG0239|consensus 38.6 4E+02 0.0088 26.3 13.9 72 80-152 241-314 (670)
348 PF14282 FlxA: FlxA-like prote 38.5 1.5E+02 0.0033 22.1 6.3 60 34-93 18-78 (106)
349 PF12709 Kinetocho_Slk19: Cent 38.2 92 0.002 23.2 5.0 25 41-65 55-79 (87)
350 PRK00578 prfB peptide chain re 38.0 3.2E+02 0.007 25.0 10.9 18 134-151 95-112 (367)
351 KOG1937|consensus 37.9 2.1E+02 0.0046 27.5 8.4 38 49-87 366-403 (521)
352 KOG1850|consensus 37.8 3.3E+02 0.0073 25.2 13.8 93 38-134 72-168 (391)
353 PF04645 DUF603: Protein of un 37.8 2.5E+02 0.0053 23.6 8.2 20 41-60 111-130 (181)
354 KOG1318|consensus 37.7 79 0.0017 29.6 5.6 62 51-112 282-343 (411)
355 PTZ00419 valyl-tRNA synthetase 37.6 1.8E+02 0.0038 29.7 8.4 46 71-116 927-974 (995)
356 PF10883 DUF2681: Protein of u 37.5 1E+02 0.0022 22.9 5.1 32 36-67 17-48 (87)
357 PF14992 TMCO5: TMCO5 family 37.1 3E+02 0.0066 24.5 10.8 61 69-129 73-135 (280)
358 PF05700 BCAS2: Breast carcino 37.0 2.5E+02 0.0053 23.4 11.7 28 108-135 141-168 (221)
359 PF05266 DUF724: Protein of un 36.9 2.4E+02 0.0053 23.3 10.9 50 110-159 131-180 (190)
360 TIGR00219 mreC rod shape-deter 36.8 1.1E+02 0.0024 26.6 6.1 41 110-153 66-106 (283)
361 KOG4466|consensus 36.6 3.2E+02 0.0069 24.6 9.6 90 70-160 39-145 (291)
362 PF09766 FimP: Fms-interacting 36.6 1.8E+02 0.004 26.1 7.6 49 51-99 93-141 (355)
363 PF07412 Geminin: Geminin; In 36.2 96 0.0021 26.3 5.4 68 33-100 106-183 (200)
364 PF10234 Cluap1: Clusterin-ass 36.0 3.1E+02 0.0066 24.2 10.1 73 81-155 170-242 (267)
365 PRK05729 valS valyl-tRNA synth 35.9 1.8E+02 0.004 29.0 8.1 46 71-116 809-856 (874)
366 PRK05771 V-type ATP synthase s 35.8 2.1E+02 0.0046 27.4 8.3 39 114-152 90-128 (646)
367 PF02403 Seryl_tRNA_N: Seryl-t 35.8 1.7E+02 0.0037 21.1 10.4 60 72-131 35-95 (108)
368 PRK01203 prefoldin subunit alp 35.8 2.2E+02 0.0048 22.5 7.4 33 67-99 8-40 (130)
369 PRK05560 DNA gyrase subunit A; 35.8 1.7E+02 0.0036 29.3 7.8 58 33-90 413-475 (805)
370 PF00769 ERM: Ezrin/radixin/mo 35.6 2.8E+02 0.0061 23.6 15.3 108 40-152 10-117 (246)
371 COG0172 SerS Seryl-tRNA synthe 35.5 2E+02 0.0043 27.0 7.8 58 41-98 42-100 (429)
372 KOG4571|consensus 35.4 88 0.0019 28.1 5.3 40 105-158 250-289 (294)
373 PRK00591 prfA peptide chain re 35.3 3E+02 0.0065 25.2 8.8 24 70-93 3-26 (359)
374 cd04772 HTH_TioE_rpt1 First He 35.3 1.7E+02 0.0037 21.2 6.0 44 101-146 55-98 (99)
375 PF08112 ATP-synt_E_2: ATP syn 35.2 1.2E+02 0.0026 20.9 4.7 24 35-58 11-35 (56)
376 COG1382 GimC Prefoldin, chaper 35.0 2.2E+02 0.0048 22.3 12.5 37 65-101 12-48 (119)
377 COG4396 Mu-like prophage host- 34.9 1.4E+02 0.0029 24.6 5.8 61 32-95 16-76 (170)
378 PF07798 DUF1640: Protein of u 34.9 2.4E+02 0.0051 22.6 11.0 19 76-94 94-113 (177)
379 PF07061 Swi5: Swi5; InterPro 34.8 1.8E+02 0.0038 21.1 7.9 53 45-99 3-55 (83)
380 PF02179 BAG: BAG domain; Int 34.8 1.5E+02 0.0033 20.4 9.2 73 43-128 1-74 (76)
381 KOG1318|consensus 34.7 3.1E+02 0.0067 25.7 8.9 90 61-154 230-320 (411)
382 cd04776 HTH_GnyR Helix-Turn-He 34.7 1.7E+02 0.0036 22.0 6.1 36 65-100 72-107 (118)
383 COG1422 Predicted membrane pro 34.7 1.9E+02 0.004 24.7 6.9 47 41-89 71-117 (201)
384 PF06156 DUF972: Protein of un 34.7 2E+02 0.0044 21.7 6.8 24 106-129 32-55 (107)
385 TIGR02473 flagell_FliJ flagell 34.6 1.9E+02 0.0041 21.4 16.8 53 108-160 80-132 (141)
386 PF06120 Phage_HK97_TLTM: Tail 34.5 3.4E+02 0.0074 24.3 16.4 87 47-136 72-160 (301)
387 PRK08032 fliD flagellar cappin 34.4 2.1E+02 0.0046 26.5 7.8 25 38-62 402-426 (462)
388 PRK13169 DNA replication intia 34.4 2.1E+02 0.0046 21.9 7.2 46 68-129 10-55 (110)
389 PF04350 PilO: Pilus assembly 34.4 54 0.0012 24.4 3.4 13 74-86 24-36 (144)
390 TIGR03545 conserved hypothetic 33.8 4.4E+02 0.0096 25.4 11.8 16 65-80 190-205 (555)
391 TIGR03752 conj_TIGR03752 integ 33.8 4E+02 0.0088 25.5 9.6 44 44-97 61-104 (472)
392 TIGR02648 rep_term_tus DNA rep 33.7 71 0.0015 28.7 4.4 69 10-85 71-141 (300)
393 TIGR02492 flgK_ends flagellar 33.7 3.3E+02 0.007 23.8 11.3 70 39-114 131-202 (322)
394 PF05008 V-SNARE: Vesicle tran 33.4 1.6E+02 0.0034 20.1 6.8 57 32-90 22-78 (79)
395 KOG4807|consensus 33.4 71 0.0015 30.4 4.5 36 30-65 504-542 (593)
396 PF05531 NPV_P10: Nucleopolyhe 33.3 1.9E+02 0.0041 21.0 6.5 54 47-100 9-62 (75)
397 PF03114 BAR: BAR domain; Int 33.2 2.3E+02 0.0049 21.9 13.1 94 42-135 95-197 (229)
398 PF05622 HOOK: HOOK protein; 33.2 14 0.00031 35.8 0.0 43 108-150 361-403 (713)
399 PF06465 DUF1087: Domain of Un 33.1 63 0.0014 22.8 3.3 23 30-52 21-43 (66)
400 KOG4098|consensus 33.0 2.6E+02 0.0057 22.5 11.1 78 65-143 21-112 (140)
401 cd04769 HTH_MerR2 Helix-Turn-H 32.7 1.4E+02 0.0031 22.1 5.4 53 49-101 60-114 (116)
402 PRK00409 recombination and DNA 32.6 5.2E+02 0.011 25.8 14.2 11 139-149 608-618 (782)
403 TIGR00414 serS seryl-tRNA synt 32.5 4E+02 0.0086 24.4 10.4 71 66-150 30-102 (418)
404 PTZ00454 26S protease regulato 32.3 1.8E+02 0.004 26.5 7.0 51 103-153 15-65 (398)
405 PF02994 Transposase_22: L1 tr 32.3 1.3E+02 0.0029 27.1 6.1 18 70-87 102-119 (370)
406 PF14723 SSFA2_C: Sperm-specif 32.0 3.1E+02 0.0066 23.0 8.1 42 108-149 129-170 (179)
407 PF10224 DUF2205: Predicted co 31.9 1.6E+02 0.0034 21.5 5.3 32 40-71 28-59 (80)
408 PLN02943 aminoacyl-tRNA ligase 31.8 2.1E+02 0.0045 29.2 7.9 46 71-116 887-934 (958)
409 TIGR01061 parC_Gpos DNA topois 31.6 2.4E+02 0.0053 28.0 8.1 34 33-66 410-444 (738)
410 PRK11147 ABC transporter ATPas 31.6 3E+02 0.0064 26.3 8.5 66 68-137 564-629 (635)
411 PF03234 CDC37_N: Cdc37 N term 31.6 3E+02 0.0064 22.7 13.5 113 39-153 29-160 (177)
412 PRK05431 seryl-tRNA synthetase 31.6 4.1E+02 0.009 24.4 12.1 17 134-150 83-99 (425)
413 PF05761 5_nucleotid: 5' nucle 31.5 91 0.002 29.2 5.0 75 36-131 306-390 (448)
414 PF09789 DUF2353: Uncharacteri 31.3 4E+02 0.0086 24.1 12.5 94 70-163 90-193 (319)
415 PF04508 Pox_A_type_inc: Viral 31.3 58 0.0013 18.7 2.3 17 76-92 4-20 (23)
416 KOG4360|consensus 31.2 5.2E+02 0.011 25.4 14.2 43 112-154 263-305 (596)
417 PF08172 CASP_C: CASP C termin 31.2 3.5E+02 0.0075 23.4 10.3 41 108-155 84-124 (248)
418 PF14197 Cep57_CLD_2: Centroso 31.1 1.9E+02 0.004 20.3 8.1 22 47-68 3-24 (69)
419 PF14389 Lzipper-MIP1: Leucine 31.1 2.1E+02 0.0045 20.8 8.6 22 40-61 6-27 (88)
420 PF10359 Fmp27_WPPW: RNA pol I 31.0 2.9E+02 0.0062 25.8 8.2 52 66-124 163-214 (475)
421 PRK08724 fliD flagellar cappin 31.0 1.9E+02 0.0042 28.7 7.2 52 38-89 613-665 (673)
422 COG3206 GumC Uncharacterized p 30.8 4.1E+02 0.009 24.1 9.8 29 68-96 344-372 (458)
423 COG1729 Uncharacterized protei 30.6 1.9E+02 0.0042 25.3 6.6 40 25-65 46-85 (262)
424 PRK09973 putative outer membra 30.4 2E+02 0.0044 21.3 5.7 18 111-128 53-70 (85)
425 PRK06664 fliD flagellar hook-a 30.3 2.6E+02 0.0057 27.5 8.0 53 38-90 596-649 (661)
426 PF14775 NYD-SP28_assoc: Sperm 30.3 1.5E+02 0.0032 20.2 4.7 38 83-126 19-56 (60)
427 PF04871 Uso1_p115_C: Uso1 / p 30.1 2.7E+02 0.0058 21.7 13.2 13 83-95 80-92 (136)
428 PF07334 IFP_35_N: Interferon- 30.0 1.2E+02 0.0026 22.0 4.4 22 39-60 4-25 (76)
429 PRK10803 tol-pal system protei 29.8 3.5E+02 0.0076 23.2 8.0 32 65-96 53-84 (263)
430 PF01535 PPR: PPR repeat; Int 29.8 94 0.002 16.4 3.3 27 92-118 3-29 (31)
431 PRK13923 putative spore coat p 29.6 2.2E+02 0.0048 23.5 6.4 31 35-65 104-134 (170)
432 PF14662 CCDC155: Coiled-coil 29.6 3.5E+02 0.0076 22.9 14.5 40 47-86 41-80 (193)
433 PLN02320 seryl-tRNA synthetase 29.6 5.1E+02 0.011 24.8 10.5 71 67-151 94-164 (502)
434 KOG4552|consensus 29.6 3.9E+02 0.0084 23.4 9.5 51 49-99 57-107 (272)
435 KOG3958|consensus 29.5 1.5E+02 0.0032 27.2 5.7 48 39-86 98-145 (371)
436 PF07820 TraC: TraC-like prote 29.4 88 0.0019 23.6 3.7 23 44-66 4-26 (92)
437 smart00338 BRLZ basic region l 29.3 1.7E+02 0.0038 19.4 5.4 25 67-91 27-51 (65)
438 KOG0962|consensus 29.3 7.3E+02 0.016 26.8 11.3 37 105-141 821-857 (1294)
439 PTZ00464 SNF-7-like protein; P 29.1 3.5E+02 0.0076 22.8 11.6 76 69-145 21-96 (211)
440 PF11853 DUF3373: Protein of u 28.7 48 0.001 31.6 2.7 25 74-98 32-56 (489)
441 PF12711 Kinesin-relat_1: Kine 28.6 2.4E+02 0.0052 20.9 5.8 44 45-88 27-85 (86)
442 KOG2685|consensus 28.5 5.1E+02 0.011 24.5 13.0 104 30-148 79-188 (421)
443 PF03670 UPF0184: Uncharacteri 28.5 2.4E+02 0.0053 20.8 6.6 44 81-126 27-70 (83)
444 PRK13848 conjugal transfer pro 28.3 88 0.0019 23.8 3.5 23 44-66 5-27 (98)
445 KOG0524|consensus 28.3 16 0.00034 33.1 -0.6 29 2-32 83-111 (359)
446 PF06305 DUF1049: Protein of u 28.3 80 0.0017 20.8 3.1 19 41-59 47-65 (68)
447 PRK03992 proteasome-activating 28.3 2.6E+02 0.0056 25.1 7.2 49 105-153 3-51 (389)
448 PF15290 Syntaphilin: Golgi-lo 28.2 3.5E+02 0.0076 24.5 7.8 62 33-119 56-117 (305)
449 PRK07737 fliD flagellar cappin 28.2 3.1E+02 0.0068 25.8 8.0 22 40-61 446-467 (501)
450 cd01109 HTH_YyaN Helix-Turn-He 28.1 2.4E+02 0.0052 20.6 8.7 61 91-151 46-106 (113)
451 PF04849 HAP1_N: HAP1 N-termin 27.6 4.6E+02 0.0099 23.7 15.9 112 37-150 169-302 (306)
452 PRK06665 flgK flagellar hook-a 27.6 5.7E+02 0.012 24.8 10.9 45 47-91 117-164 (627)
453 PF07407 Seadorna_VP6: Seadorn 27.6 2.6E+02 0.0057 26.0 7.0 41 6-62 19-59 (420)
454 PF10458 Val_tRNA-synt_C: Valy 27.6 2E+02 0.0043 19.4 6.0 34 79-117 17-50 (66)
455 KOG1924|consensus 27.5 1.4E+02 0.0031 30.7 5.8 39 112-150 469-507 (1102)
456 PRK08471 flgK flagellar hook-a 27.3 5.8E+02 0.013 24.7 10.8 55 40-100 137-191 (613)
457 COG3883 Uncharacterized protei 27.2 4.4E+02 0.0095 23.3 15.8 44 111-154 156-199 (265)
458 KOG3595|consensus 27.2 8E+02 0.017 26.3 15.6 128 34-166 699-827 (1395)
459 TIGR01461 greB transcription e 27.2 2E+02 0.0043 22.9 5.6 32 63-94 42-73 (156)
460 PF05308 Mito_fiss_reg: Mitoch 26.8 74 0.0016 27.6 3.3 22 42-63 122-143 (253)
461 KOG4643|consensus 26.6 8.1E+02 0.017 26.1 15.0 76 41-118 400-489 (1195)
462 PF07558 Shugoshin_N: Shugoshi 26.6 82 0.0018 20.4 2.7 26 38-63 17-42 (46)
463 TIGR02209 ftsL_broad cell divi 26.5 2.2E+02 0.0047 19.5 5.8 45 35-80 24-68 (85)
464 KOG2264|consensus 26.4 2.7E+02 0.0059 27.9 7.3 28 36-63 94-121 (907)
465 TIGR01063 gyrA DNA gyrase, A s 26.3 3.5E+02 0.0076 27.1 8.3 28 35-62 412-440 (800)
466 PF09421 FRQ: Frequency clock 26.3 53 0.0011 33.9 2.6 70 28-97 121-195 (989)
467 PF03915 AIP3: Actin interacti 26.1 5.5E+02 0.012 24.1 11.4 63 38-101 172-234 (424)
468 PRK11147 ABC transporter ATPas 26.1 2.3E+02 0.005 27.0 6.8 59 68-129 570-628 (635)
469 PRK14900 valS valyl-tRNA synth 26.0 3.4E+02 0.0074 28.1 8.3 45 71-115 840-886 (1052)
470 TIGR01730 RND_mfp RND family e 25.8 3.8E+02 0.0083 22.1 8.8 16 136-151 114-129 (322)
471 PF02996 Prefoldin: Prefoldin 25.7 2.6E+02 0.0057 20.2 7.5 43 109-151 76-118 (120)
472 PRK15178 Vi polysaccharide exp 25.7 3.4E+02 0.0075 25.5 7.6 55 72-126 278-337 (434)
473 PLN02381 valyl-tRNA synthetase 25.6 3.4E+02 0.0073 28.2 8.2 46 71-116 995-1042(1066)
474 PF11853 DUF3373: Protein of u 25.6 62 0.0013 30.9 2.8 20 39-59 29-48 (489)
475 PF11544 Spc42p: Spindle pole 25.3 2.7E+02 0.0059 20.2 8.0 36 39-74 9-44 (76)
476 PF05103 DivIVA: DivIVA protei 25.3 82 0.0018 23.2 3.0 27 73-99 39-65 (131)
477 cd04786 HTH_MerR-like_sg7 Heli 25.2 2.5E+02 0.0054 21.6 5.7 42 66-107 78-119 (131)
478 PF06156 DUF972: Protein of un 25.2 3E+02 0.0066 20.8 7.4 32 37-68 10-41 (107)
479 PF02181 FH2: Formin Homology 25.1 4.5E+02 0.0098 22.9 8.0 60 40-99 279-342 (370)
480 PRK01203 prefoldin subunit alp 25.0 2.2E+02 0.0047 22.5 5.4 100 45-144 3-121 (130)
481 PF10267 Tmemb_cc2: Predicted 25.0 5.6E+02 0.012 23.8 17.5 65 28-92 205-270 (395)
482 PF10212 TTKRSYEDQ: Predicted 24.9 6.4E+02 0.014 24.4 12.3 120 3-129 382-510 (518)
483 PF00846 Hanta_nucleocap: Hant 24.9 4.6E+02 0.0099 24.8 8.1 41 53-93 24-69 (428)
484 PF06401 Alpha-2-MRAP_C: Alpha 24.8 2.7E+02 0.0058 23.9 6.2 57 73-129 24-95 (214)
485 PRK15325 type III secretion sy 24.8 84 0.0018 23.1 2.8 22 80-101 44-65 (80)
486 PF15358 TSKS: Testis-specific 24.8 6.3E+02 0.014 24.3 9.1 111 37-154 118-230 (558)
487 PRK07857 hypothetical protein; 24.7 3.2E+02 0.0069 20.9 7.0 34 35-68 28-61 (106)
488 KOG4196|consensus 24.6 1.9E+02 0.0042 23.2 5.0 49 28-79 57-115 (135)
489 PRK11820 hypothetical protein; 24.5 4.9E+02 0.011 22.9 8.1 72 83-155 155-234 (288)
490 PF10752 DUF2533: Protein of u 24.5 62 0.0013 24.0 2.1 16 42-57 48-63 (84)
491 PRK14151 heat shock protein Gr 24.4 4E+02 0.0086 21.8 7.1 64 33-99 18-83 (176)
492 PF05064 Nsp1_C: Nsp1-like C-t 24.3 53 0.0011 24.9 1.8 79 70-157 33-111 (116)
493 TIGR02492 flgK_ends flagellar 24.3 1.6E+02 0.0034 25.8 4.9 44 42-85 166-210 (322)
494 PRK15335 type III secretion sy 24.2 2.3E+02 0.005 22.9 5.4 52 28-79 80-131 (147)
495 PF06936 Selenoprotein_S: Sele 24.2 4.1E+02 0.0089 22.1 7.2 35 101-135 71-105 (190)
496 KOG4436|consensus 23.9 2.1E+02 0.0046 29.4 6.2 47 46-94 810-856 (948)
497 PF08930 DUF1912: Domain of un 23.9 3E+02 0.0066 20.3 6.9 49 41-93 18-66 (84)
498 KOG0517|consensus 23.8 1.2E+03 0.025 27.0 12.0 114 30-143 1336-1465(2473)
499 PF08653 DASH_Dam1: DASH compl 23.7 1.9E+02 0.0041 19.9 4.2 31 71-101 3-33 (58)
500 PF00804 Syntaxin: Syntaxin; 23.7 2.5E+02 0.0053 19.2 11.3 73 67-148 1-73 (103)
No 1
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=96.17 E-value=0.36 Score=41.23 Aligned_cols=101 Identities=16% Similarity=0.225 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy14403 37 EGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELR 116 (168)
Q Consensus 37 ~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk 116 (168)
++-||.|+.++..=-++|..+++..+.+.--...|.+..+.|..|=...-.+|.++| .|+..|++.+..++
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~---------~DIn~lE~iIkqa~ 73 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQIN---------QDINTLENIIKQAE 73 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999999999999999999997776 35555778888888
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 117 AANDIETRHLEEQFTERSKKQHQLHELEAE 146 (168)
Q Consensus 117 ~~N~~~~~~ld~iF~eR~~~E~~i~~lE~e 146 (168)
....+..+.+..++.+=..+-.++..+-.+
T Consensus 74 ~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 74 SERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887777777777777666
No 2
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.62 E-value=0.55 Score=48.30 Aligned_cols=72 Identities=15% Similarity=0.249 Sum_probs=56.2
Q ss_pred HHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 79 ATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKL 150 (168)
Q Consensus 79 a~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~ 150 (168)
..|+.+|+.+|.+.-.-+.-..+..++++|+.+...+...-+.....++.+-.+...+..+|+.|+..+.++
T Consensus 798 ~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el 869 (1311)
T TIGR00606 798 QMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNEL 869 (1311)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777766655555555678999999999999999999999999999988888888885555443
No 3
>KOG0933|consensus
Probab=95.59 E-value=1.3 Score=45.36 Aligned_cols=156 Identities=24% Similarity=0.290 Sum_probs=92.0
Q ss_pred cccccccccC----CCCCCCCCCC---CCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--------
Q psy14403 3 DSDRLVTQQG----LSGLRTGSAL---RGPGFRQVQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHAT-------- 67 (168)
Q Consensus 3 v~dRPvTQqG----l~G~rt~~~~---~Gp~~RQV~DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~-------- 67 (168)
|--|.||=.| -+|+-||+++ ++|- |++++ +.-++.+++.++.|++.+.+++..++-.+.-
T Consensus 643 i~~rsVTl~GDV~dP~GtlTGGs~~~~a~~L-~~l~~----l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql 717 (1174)
T KOG0933|consen 643 IRTRSVTLEGDVYDPSGTLTGGSRSKGADLL-RQLQK----LKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQL 717 (1174)
T ss_pred cccceeeecCceeCCCCcccCCCCCCcccHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788776 3565554322 1233 66665 3456677777777777777776655443333
Q ss_pred ------------------HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH----------------hhcCCCHHHHHHHHH
Q psy14403 68 ------------------FLLYDKRVKEMATELTELQGKLSDYNLTMDK----------------VNTQTNIADIEEEYL 113 (168)
Q Consensus 68 ------------------~~~yekrae~La~EI~~LQG~LADyNl~~Dk----------------~~t~~d~~~i~~e~~ 113 (168)
|.......+.+..+|.+++.+|-+--.++-+ .+-+-.+.++..++.
T Consensus 718 ~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik 797 (1174)
T KOG0933|consen 718 ELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIK 797 (1174)
T ss_pred HHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHH
Confidence 3333333444444555555444443332222 233456888899999
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy14403 114 ELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMIDISMWIDIST 163 (168)
Q Consensus 114 ~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~~~~~~~~~~ 163 (168)
.++.+++........-..+.....-++.+++.++...++.-.++---|++
T Consensus 798 ~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~ 847 (1174)
T KOG0933|consen 798 TAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISS 847 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988887777777666666666666666666666655555444444
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.56 E-value=1.1 Score=44.07 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14403 39 LLQLKIRDLTNEITRLKRQIEL 60 (168)
Q Consensus 39 lLR~Ki~El~~EI~kL~~e~e~ 60 (168)
.+...+..+..++..+...+..
T Consensus 727 ~~~~~l~~~~~~~~~l~~~~~~ 748 (1164)
T TIGR02169 727 QLEQEEEKLKERLEELEEDLSS 748 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554444443
No 5
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.42 E-value=0.99 Score=37.97 Aligned_cols=96 Identities=26% Similarity=0.414 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAAN 119 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N 119 (168)
|..-...|.-|-.+|+..++..+..++ .|+.||.+|..++.+.+-++.+..+ |..+..+|+.-.
T Consensus 13 L~~~n~~L~~en~kL~~~ve~~ee~na----------~L~~e~~~L~~q~~s~Qqal~~aK~------l~eEledLk~~~ 76 (193)
T PF14662_consen 13 LQLNNQKLADENAKLQRSVETAEEGNA----------QLAEEITDLRKQLKSLQQALQKAKA------LEEELEDLKTLA 76 (193)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 445556677777788877777776665 5778899999999999988887755 555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14403 120 DIETRHLEEQFTERSKKQHQLHELEAEIEKLD 151 (168)
Q Consensus 120 ~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~ 151 (168)
....++--.+..+.+..|.+.+.|..+|+.++
T Consensus 77 ~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lq 108 (193)
T PF14662_consen 77 KSLEEENRSLLAQARQLEKEQQSLVAEIETLQ 108 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566666667776666666666543
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.40 E-value=1.4 Score=43.13 Aligned_cols=8 Identities=25% Similarity=0.738 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q psy14403 48 TNEITRLK 55 (168)
Q Consensus 48 ~~EI~kL~ 55 (168)
..++..++
T Consensus 804 ~~~~~~l~ 811 (1164)
T TIGR02169 804 EEEVSRIE 811 (1164)
T ss_pred HHHHHHHH
Confidence 33333333
No 7
>PRK03918 chromosome segregation protein; Provisional
Probab=95.36 E-value=0.95 Score=43.75 Aligned_cols=61 Identities=20% Similarity=0.358 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhh
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVN 100 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~ 100 (168)
++...+++..+|..+...+.....-...+..+++....+..++..++.++....-.++.+.
T Consensus 167 ~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~ 227 (880)
T PRK03918 167 LGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLE 227 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888877777777888888888888888888888888777776654
No 8
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.34 E-value=0.81 Score=43.79 Aligned_cols=95 Identities=19% Similarity=0.297 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy14403 37 EGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELR 116 (168)
Q Consensus 37 ~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk 116 (168)
.++|..++.++..|-+.|.+....++++. ..|..+|..|+.+|...=- .++.+.....++.
T Consensus 138 a~~lQ~qlE~~qkE~eeL~~~~~~Le~e~----------~~l~~~v~~l~~eL~~~~e---------e~e~L~~~~kel~ 198 (546)
T PF07888_consen 138 AQLLQNQLEECQKEKEELLKENEQLEEEV----------EQLREEVERLEAELEQEEE---------EMEQLKQQQKELT 198 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
Confidence 35677777777777666666666555554 4455555555554443222 2344445555555
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 117 AANDIETRHLEEQFTERSKKQHQLHELEAEIEKL 150 (168)
Q Consensus 117 ~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~ 150 (168)
..++....+.+.++.++......|.++|.+|..+
T Consensus 199 ~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l 232 (546)
T PF07888_consen 199 ESSEELKEERESLKEQLAEARQRIRELEEDIKTL 232 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666665543
No 9
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.31 E-value=1.2 Score=37.05 Aligned_cols=105 Identities=21% Similarity=0.264 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcH
Q psy14403 41 QLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAAND 120 (168)
Q Consensus 41 R~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~ 120 (168)
..||++|.++|.-++.+++....++-.+...++|-+ +.|..++|.=+|+=-++...+. +..-|+.+.-
T Consensus 11 ~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~---kAL~k~e~~e~~Lpqll~~h~e---------Evr~Lr~~LR 78 (194)
T PF15619_consen 11 LHKIKELQNELAELQRKLQELRKENKTLKQLQKRQE---KALQKYEDTEAELPQLLQRHNE---------EVRVLRERLR 78 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhhHHHHHHHHHH---------HHHHHHHHHH
Confidence 468999999999999999999999999999999954 4456666665665555554443 3333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy14403 121 IETRHLEEQFTERSKKQHQLHELEAEIEKLDMIDISM 157 (168)
Q Consensus 121 ~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~~~~ 157 (168)
+.....-.+=..-++++.++..+..++..++.++..+
T Consensus 79 ~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dk 115 (194)
T PF15619_consen 79 KSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDK 115 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3333334444444566666667777777666666544
No 10
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.21 E-value=1 Score=41.14 Aligned_cols=55 Identities=15% Similarity=0.224 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHH
Q psy14403 37 EGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSD 91 (168)
Q Consensus 37 ~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LAD 91 (168)
+..|...+.+|..++..|...+..++.....+..+.++..++..++..+.+.|.+
T Consensus 301 ~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~ 355 (562)
T PHA02562 301 ITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLIT 355 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667888888888888888877777777777777777777777777777655
No 11
>PRK09039 hypothetical protein; Validated
Probab=95.17 E-value=1.3 Score=39.50 Aligned_cols=121 Identities=12% Similarity=0.179 Sum_probs=74.9
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc-----C
Q psy14403 28 RQVQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNT-----Q 102 (168)
Q Consensus 28 RQV~DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t-----~ 102 (168)
+||.+-+=-+++=+++...+..+|..|+.+++..+..++..... +.........++++++.+.-.++...+ +
T Consensus 60 ~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~---~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~ 136 (343)
T PRK09039 60 SQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQAL---LAELAGAGAAAEGRAGELAQELDSEKQVSARAL 136 (343)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555555666666666777777777776666666544432 112222223344444444333332221 2
Q ss_pred CCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14403 103 TNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLD 151 (168)
Q Consensus 103 ~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~ 151 (168)
-++.-+..++..|+.+.......|+..=..-++...++..++.+|+...
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356667788888888888888888888888888888888888887765
No 12
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.09 E-value=1.4 Score=45.33 Aligned_cols=119 Identities=10% Similarity=0.184 Sum_probs=81.5
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--hHhHHHHHHHHHHh---hcC
Q psy14403 28 RQVQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTEL--QGKLSDYNLTMDKV---NTQ 102 (168)
Q Consensus 28 RQV~DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~L--QG~LADyNl~~Dk~---~t~ 102 (168)
+|+.+..+=+..+-..+.++..|+..+..++..+.++-.....-++ .+...|.-+ +.+|.+...-+..+ ..+
T Consensus 970 ~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr---~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~ 1046 (1311)
T TIGR00606 970 DYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQER---WLQDNLTLRKRENELKEVEEELKQHLKEMGQ 1046 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6677766666666666666666666666666666555444333333 223333333 44444444433333 456
Q ss_pred CCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 103 TNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEK 149 (168)
Q Consensus 103 ~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~ 149 (168)
.+...+..++.+|..+..........+.-+.+.++.++..++.++++
T Consensus 1047 ~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e 1093 (1311)
T TIGR00606 1047 MQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE 1093 (1311)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 78899999999999999999999999999999999999999999954
No 13
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.08 E-value=1.5 Score=40.17 Aligned_cols=87 Identities=15% Similarity=0.173 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcH
Q psy14403 41 QLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAAND 120 (168)
Q Consensus 41 R~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~ 120 (168)
=.++..|+.+|..|+.+++.++..-+.+.....++..+...+.+++..+...+-.+..+.. ....++.+...|...+.
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~--~~~~l~~ei~~l~~~~~ 375 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVD--KAKKVKAAIEELQAEFV 375 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhh
Confidence 3666677777777777777777777777777777777777777777777666666544322 23344444444444444
Q ss_pred HHHHHHHHH
Q psy14403 121 IETRHLEEQ 129 (168)
Q Consensus 121 ~~~~~ld~i 129 (168)
.....+..+
T Consensus 376 ~~~~~l~~l 384 (562)
T PHA02562 376 DNAEELAKL 384 (562)
T ss_pred chHHHHHHH
Confidence 333333333
No 14
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.03 E-value=0.89 Score=38.81 Aligned_cols=111 Identities=22% Similarity=0.356 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHH-------H
Q psy14403 43 KIRDLTNEITRLKRQIELSAKE-----HATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIE-------E 110 (168)
Q Consensus 43 Ki~El~~EI~kL~~e~e~~~~e-----~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~-------~ 110 (168)
|++.|..+=.+|..++..+... ...+..|+....+|...|.++..+-+-+-.-++++.. ..+++. .
T Consensus 19 kVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~--e~~~~r~k~e~e~~ 96 (312)
T PF00038_consen 19 KVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKE--ELEDLRRKYEEELA 96 (312)
T ss_dssp HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHH--HHHHHHHHHHHHHH
Confidence 4555555555666666555444 2356678877777777777666666666666665554 333443 3
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy14403 111 EYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMIDI 155 (168)
Q Consensus 111 e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~~ 155 (168)
....+.......++.+|.....|.+.+..+..++.++.-+++.-.
T Consensus 97 ~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~he 141 (312)
T PF00038_consen 97 ERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHE 141 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhh
Confidence 444556666677899999999999999999999999887765433
No 15
>PRK03918 chromosome segregation protein; Provisional
Probab=94.97 E-value=2 Score=41.59 Aligned_cols=112 Identities=20% Similarity=0.298 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc---------CCCHHHHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNT---------QTNIADIEE 110 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t---------~~d~~~i~~ 110 (168)
|+..+..+..+++.+..++..++.....+..+...++.+...+.+|...+.++.-+...+.. ...++.+..
T Consensus 312 l~~~~~~l~~~~~~l~~~l~~~e~~~~~~~e~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~l~~~l~~~~~~~l~~ 391 (880)
T PRK03918 312 IEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEK 391 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence 44555566666666666666666665555555555555555555555555555444444321 123345555
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14403 111 EYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLD 151 (168)
Q Consensus 111 e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~ 151 (168)
.+..+...-+...+.+..+.......+..+..++..++.+.
T Consensus 392 ~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~ 432 (880)
T PRK03918 392 ELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK 432 (880)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566554455666677777777777777777776666554
No 16
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=94.80 E-value=1.1 Score=36.93 Aligned_cols=95 Identities=24% Similarity=0.308 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHH
Q psy14403 36 YEGLLQLKIRDLTNEITRLKRQIELSAKEHAT---FLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEY 112 (168)
Q Consensus 36 y~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~---~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~ 112 (168)
-+.-|..++.++..+|..|+.+++....++.. ....-.+.+.|..+++.|+.+|+.|. . .||+.|...-
T Consensus 70 ~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~-------~-~Dp~~i~~~~ 141 (188)
T PF03962_consen 70 KLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYS-------E-NDPEKIEKLK 141 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------h-cCHHHHHHHH
Confidence 35666777777777777777777766544433 34444566667777777777777443 3 5888888888
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHH
Q psy14403 113 LELRAANDIETRHLEEQFTERSKKQH 138 (168)
Q Consensus 113 ~~Lk~~N~~~~~~ld~iF~eR~~~E~ 138 (168)
.++....+..-.--|+||.-+.=.-.
T Consensus 142 ~~~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 142 EEIKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 88888888888888999986654443
No 17
>PRK02224 chromosome segregation protein; Provisional
Probab=94.74 E-value=1.9 Score=41.95 Aligned_cols=81 Identities=20% Similarity=0.279 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHH-------HHHHHHHHHHHH
Q psy14403 68 FLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEE-------QFTERSKKQHQL 140 (168)
Q Consensus 68 ~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~-------iF~eR~~~E~~i 140 (168)
+..++.+.+.+...+.+|+..|..+..-+..+... ++.+...+..+...+...+..++. +=......+.++
T Consensus 309 ~~~l~~~~~~l~~k~~el~~~l~~~~~~l~~~~~~--~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l 386 (880)
T PRK02224 309 AEAVEARREELEDRDEELRDRLEECRVAAQAHNEE--AESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEI 386 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666655555554432 355555555555555544444433 333333334444
Q ss_pred HHHHHHHHHH
Q psy14403 141 HELEAEIEKL 150 (168)
Q Consensus 141 ~~lE~eie~~ 150 (168)
..++.+++..
T Consensus 387 ~~l~~el~el 396 (880)
T PRK02224 387 EELEEEIEEL 396 (880)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 18
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.66 E-value=2.1 Score=37.70 Aligned_cols=101 Identities=18% Similarity=0.264 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHH
Q psy14403 39 LLQLKIRDLTNEITRLKRQIELSAKE----HATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLE 114 (168)
Q Consensus 39 lLR~Ki~El~~EI~kL~~e~e~~~~e----~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~ 114 (168)
++..-...|......|+.+...+.+. +..+..+..++..|..|++.|+...+... .+.. ...+.++.++..
T Consensus 146 ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~----~~D~-~eL~~lr~eL~~ 220 (325)
T PF08317_consen 146 LLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIE----SCDQ-EELEALRQELAE 220 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hcCH-HHHHHHHHHHHH
Confidence 34444445555555555554444333 35677788888899999998888776622 1111 223334444444
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 115 LRAANDIETRHLEEQFTERSKKQHQLHELE 144 (168)
Q Consensus 115 Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE 144 (168)
+.......++.++++=.++..++..+..+.
T Consensus 221 ~~~~i~~~k~~l~el~~el~~l~~~i~~~~ 250 (325)
T PF08317_consen 221 QKEEIEAKKKELAELQEELEELEEKIEELE 250 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555444555555444444444433333
No 19
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.59 E-value=2.3 Score=35.35 Aligned_cols=106 Identities=23% Similarity=0.373 Sum_probs=72.6
Q ss_pred hhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHHH----HHHHHHHHHHHHHHHHhHhHHHHHHHHHHh-hcCCC
Q psy14403 33 KRYYEGLLQL---KIRDLTNEITRLKRQIELSAKEHATFL----LYDKRVKEMATELTELQGKLSDYNLTMDKV-NTQTN 104 (168)
Q Consensus 33 ksYy~glLR~---Ki~El~~EI~kL~~e~e~~~~e~s~~~----~yekrae~La~EI~~LQG~LADyNl~~Dk~-~t~~d 104 (168)
|.||-.+.+. .|..|..||.-+++..+...+.-+... .+-.-...+..|+.+|+.+|++|-.---.+ ++...
T Consensus 15 K~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~r 94 (201)
T PF13851_consen 15 KNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKAR 94 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899887774 456666677777666555555444332 233445677889999999999998643333 34556
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q psy14403 105 IADIEEEYLELRAANDIETRHLEEQFTERSKKQH 138 (168)
Q Consensus 105 ~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~ 138 (168)
...++.++..|+-.++-....++.+-.+|.+...
T Consensus 95 l~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~ 128 (201)
T PF13851_consen 95 LKELEKELKDLKWEHEVLEQRFEKLEQERDELYR 128 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888887777777777777766654
No 20
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=94.58 E-value=0.64 Score=37.26 Aligned_cols=60 Identities=15% Similarity=0.261 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHhcHHHHHHHH
Q psy14403 68 FLLYDKRVKEMATELTELQGKLSDYNLTMDKVNT-QTNIADIEEEYLELRAANDIETRHLE 127 (168)
Q Consensus 68 ~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t-~~d~~~i~~e~~~Lk~~N~~~~~~ld 127 (168)
+.....++..+-.|+..|+++|.+.|--+..+.. +.|.++|..++..|+..|+...+...
T Consensus 15 i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e 75 (155)
T PF06810_consen 15 IEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYE 75 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346678888888999999999999999998876 78999999999999999985544433
No 21
>PRK02224 chromosome segregation protein; Provisional
Probab=94.58 E-value=2.6 Score=41.01 Aligned_cols=73 Identities=14% Similarity=0.194 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 74 RVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEK 149 (168)
Q Consensus 74 rae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~ 149 (168)
...++..+|.++..++++++.-+.++. +..++..++.++...-++....++.+=..+....+++..+..+|.+
T Consensus 566 ~~~~~~~~~~~~~~~~~~l~~~~~~le---~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~ 638 (880)
T PRK02224 566 EAEEAREEVAELNSKLAELKERIESLE---RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRE 638 (880)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556666666666666666665 2566666655555555544444444444444444444444444433
No 22
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.47 E-value=0.67 Score=38.92 Aligned_cols=85 Identities=15% Similarity=0.221 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q psy14403 39 LLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAA 118 (168)
Q Consensus 39 lLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~ 118 (168)
-+|..+-++.+|+..++.++.....+ ......+++.++++-+.. +++|+.+
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~-------------~~~~~~~l~~~~~~~~~~----------------~~~L~~~ 140 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNT-------------WNQRTAEMQQKVAQSDSV----------------INGLKEE 140 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhH-------------HHHHHHHHHHHHHHHHHH----------------HHHHHHH
Confidence 46788889999999999888887644 224444555555552222 3347777
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q psy14403 119 NDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMIDISMWI 159 (168)
Q Consensus 119 N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~~~~~~ 159 (168)
|++..+++..+=.+. ..++.++..+++-....|+
T Consensus 141 n~~L~~~l~~~~~~~-------~~l~~~~~~~~~~~~~~wf 174 (206)
T PRK10884 141 NQKLKNQLIVAQKKV-------DAANLQLDDKQRTIIMQWF 174 (206)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 777777666644433 3444444444444444443
No 23
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.46 E-value=0.13 Score=45.44 Aligned_cols=92 Identities=28% Similarity=0.480 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q psy14403 52 TRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFT 131 (168)
Q Consensus 52 ~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~ 131 (168)
+.|+++.+...++...|..|-++.+ +-.....+..++..+...|+.......+++..+=.
T Consensus 12 ~~l~~~~~~~~~E~~~Y~~fL~~l~--------------------~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~ 71 (314)
T PF04111_consen 12 EQLDKQLEQAEKERDTYQEFLKKLE--------------------EESDSEEDIEELEEELEKLEQEEEELLQELEELEK 71 (314)
T ss_dssp --------------------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------------hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666655544 11112344567777888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy14403 132 ERSKKQHQLHELEAEIEKLDMIDISMWIDIST 163 (168)
Q Consensus 132 eR~~~E~~i~~lE~eie~~~~~~~~~~~~~~~ 163 (168)
++.+.+.++.+++.+.+++...-...|-+.+.
T Consensus 72 e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~ 103 (314)
T PF04111_consen 72 EREELDQELEELEEELEELDEEEEEYWREYNE 103 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888777777766543
No 24
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.38 E-value=2.6 Score=36.46 Aligned_cols=87 Identities=11% Similarity=0.284 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH-------HHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q psy14403 65 HATFLLYDKRVKEMATELTELQGKLSDYNLT-------MDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQ 137 (168)
Q Consensus 65 ~s~~~~yekrae~La~EI~~LQG~LADyNl~-------~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E 137 (168)
+..+...+..++++-.+|..++-.|.+.+-= ++...+.-...++..+...++.+-.....++..+-.++...+
T Consensus 44 ~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~ 123 (239)
T COG1579 44 NKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLE 123 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555433 333333333555556666666666667777777777777776
Q ss_pred HHHHHHHHHHHHHh
Q psy14403 138 HQLHELEAEIEKLD 151 (168)
Q Consensus 138 ~~i~~lE~eie~~~ 151 (168)
..+..+...+..+.
T Consensus 124 ~~i~~l~~~~~~~e 137 (239)
T COG1579 124 KEIEDLKERLERLE 137 (239)
T ss_pred HHHHHHHHHHHHHH
Confidence 66655555555443
No 25
>PRK11637 AmiB activator; Provisional
Probab=94.32 E-value=3.9 Score=36.97 Aligned_cols=32 Identities=19% Similarity=0.152 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14403 121 IETRHLEEQFTERSKKQHQLHELEAEIEKLDM 152 (168)
Q Consensus 121 ~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~ 152 (168)
...+.++.+-..+.+.+.....++.+..++..
T Consensus 167 ~d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~ 198 (428)
T PRK11637 167 ARQETIAELKQTREELAAQKAELEEKQSQQKT 198 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566555555555555555544444433
No 26
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.31 E-value=1.7 Score=36.47 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 38 GLLQLKIRDLTNEITRLKRQIEL 60 (168)
Q Consensus 38 glLR~Ki~El~~EI~kL~~e~e~ 60 (168)
-.|...+.+++.+.+.+..+...
T Consensus 96 p~le~el~~l~~~l~~~~~~~~~ 118 (206)
T PRK10884 96 PDLENQVKTLTDKLNNIDNTWNQ 118 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Confidence 45666666666666666655443
No 27
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.24 E-value=1.2 Score=34.57 Aligned_cols=94 Identities=17% Similarity=0.344 Sum_probs=44.6
Q ss_pred CCCCCcccccchhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHH----HHH
Q psy14403 22 LRGPGFRQVQDKRYYEGLLQLKIRD---LTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSD----YNL 94 (168)
Q Consensus 22 ~~Gp~~RQV~DksYy~glLR~Ki~E---l~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LAD----yNl 94 (168)
++||. ++=-..+-+.||.+=.| +..|+.+|..+.+....+=.....---...+...++..|+.+|+| |+.
T Consensus 10 ~~~~~---~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t 86 (120)
T PF12325_consen 10 SGGPS---VQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQT 86 (120)
T ss_pred cCCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666 44444444444444332 233444444443333333222222222233334444444444443 566
Q ss_pred HHHHhhcCCC-HHHHHHHHHHHHHh
Q psy14403 95 TMDKVNTQTN-IADIEEEYLELRAA 118 (168)
Q Consensus 95 ~~Dk~~t~~d-~~~i~~e~~~Lk~~ 118 (168)
++.-+...+. .++++++..+||..
T Consensus 87 ~LellGEK~E~veEL~~Dv~DlK~m 111 (120)
T PF12325_consen 87 LLELLGEKSEEVEELRADVQDLKEM 111 (120)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHH
Confidence 7766665443 66777777776654
No 28
>KOG0250|consensus
Probab=94.19 E-value=2.2 Score=43.72 Aligned_cols=119 Identities=13% Similarity=0.248 Sum_probs=87.2
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------hhHHHHHHHHHHHHHHHHHHHhHhHHH
Q psy14403 30 VQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKE------------------HATFLLYDKRVKEMATELTELQGKLSD 91 (168)
Q Consensus 30 V~DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e------------------~s~~~~yekrae~La~EI~~LQG~LAD 91 (168)
+.++.+=.+-+|.|++++.+.|+.+..+.+....+ ...|..-+....++..++..|.-+++|
T Consensus 304 i~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~ 383 (1074)
T KOG0250|consen 304 IEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIAD 383 (1074)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667888888888888888877665543332 233445556677778888888999999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 92 YNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEK 149 (168)
Q Consensus 92 yNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~ 149 (168)
++--.++ ..+...++++++++.|+.+++..+.++..|=.+....-+.++..+++...
T Consensus 384 ~~~~~~~-~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~ 440 (1074)
T KOG0250|consen 384 LEKQTNN-ELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEH 440 (1074)
T ss_pred HHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9987744 34578999999999999999998888888877777776666666666533
No 29
>KOG0977|consensus
Probab=94.16 E-value=2.4 Score=40.61 Aligned_cols=119 Identities=21% Similarity=0.264 Sum_probs=73.5
Q ss_pred hhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCH
Q psy14403 33 KRYYEGLL---QLKIRDLTNEITRLKRQIELSAKEHATF----LLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNI 105 (168)
Q Consensus 33 ksYy~glL---R~Ki~El~~EI~kL~~e~e~~~~e~s~~----~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~ 105 (168)
|.||...| |.-+.+...+..++..++..+.-+...| ..-++.+..-...+.++.+.|++.+.-..-+ ..+.
T Consensus 87 k~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~--krr~ 164 (546)
T KOG0977|consen 87 KAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTL--KRRI 164 (546)
T ss_pred hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHH--HHHH
Confidence 46776554 4455555566666666665555443332 2233333444445555666666555444433 3467
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhh
Q psy14403 106 ADIEEEYLELRAANDIETRHLEEQF-------TERSKKQHQLHELEAEIEKLDMI 153 (168)
Q Consensus 106 ~~i~~e~~~Lk~~N~~~~~~ld~iF-------~eR~~~E~~i~~lE~eie~~~~~ 153 (168)
..++.+...|+..|.+...+|..+= .-|.+.+..++.|.++|.-+.+.
T Consensus 165 ~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~ 219 (546)
T KOG0977|consen 165 KALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRI 219 (546)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 8888999999999988777766665 45677778888888877665543
No 30
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=93.70 E-value=0.93 Score=35.09 Aligned_cols=103 Identities=16% Similarity=0.273 Sum_probs=84.2
Q ss_pred ccchhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCC
Q psy14403 30 VQDKRYYEGLLQ--LKIRDLTNEITRLKRQIELSAKEH----ATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQT 103 (168)
Q Consensus 30 V~DksYy~glLR--~Ki~El~~EI~kL~~e~e~~~~e~----s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~ 103 (168)
+.|.++|.+.+. ..+.++..++..+..+...+.+.+ ..+.........+-.+++.|+.+..+-..-++.+..+.
T Consensus 13 l~d~~~l~~~v~~l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~ 92 (150)
T PF07200_consen 13 LSDEEKLDAFVKSLPQVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNY 92 (150)
T ss_dssp HHH-HHHHHHGGGGS--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HcCHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 356777777777 558899999999999999999988 78888888888889999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Q psy14403 104 NIADIEEEYLELRAANDIETRHLEEQFTE 132 (168)
Q Consensus 104 d~~~i~~e~~~Lk~~N~~~~~~ld~iF~e 132 (168)
+|..+...+...-..++.....+-+-|..
T Consensus 93 s~~~l~~~L~~~~~e~eeeSe~lae~fl~ 121 (150)
T PF07200_consen 93 SPDALLARLQAAASEAEEESEELAEEFLD 121 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-S-SS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999888888888888877655654
No 31
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=93.65 E-value=3.7 Score=37.64 Aligned_cols=108 Identities=19% Similarity=0.235 Sum_probs=70.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHH
Q psy14403 34 RYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYL 113 (168)
Q Consensus 34 sYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~ 113 (168)
.----||+.||+-|+.-=+-|.+=-+..+.....-..+.--.+.|-.++...++ ++ +.++.+...++.-..
T Consensus 67 ~aa~~llq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~-------vf--~k~k~~~q~LE~li~ 137 (401)
T PF06785_consen 67 TAAGQLLQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVRE-------VF--MKTKGDIQHLEGLIR 137 (401)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HH--HHhcchHHHHHHHHH
Confidence 333446777777766544444333333333222222333334444444444333 22 356788999999999
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 114 ELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKL 150 (168)
Q Consensus 114 ~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~ 150 (168)
.+++.|.+.+-++|.+--+..++|++.+.|-.|+.+.
T Consensus 138 ~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~ 174 (401)
T PF06785_consen 138 HLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA 174 (401)
T ss_pred HHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999886666543
No 32
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=93.48 E-value=1.7 Score=41.13 Aligned_cols=118 Identities=14% Similarity=0.299 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy14403 36 YEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLEL 115 (168)
Q Consensus 36 y~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~L 115 (168)
|+.-++.....|..|+.+++.-=..-..+-..+..++++.+.+......+...+++-..+-.-+.. ...++...+..+
T Consensus 314 ~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~--~l~~~~~~l~~i 391 (560)
T PF06160_consen 314 YLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQE--ELEEIEEQLEEI 391 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHH--HHHHHHHHHHHH
Confidence 344455555555555555554433333344444444444444444444444333332222222211 233444444444
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy14403 116 RAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMIDI 155 (168)
Q Consensus 116 k~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~~ 155 (168)
...=......++.++.+=+...+.+..+...|...+|.+.
T Consensus 392 e~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le 431 (560)
T PF06160_consen 392 EEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE 431 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556666777777777777788888888888888765
No 33
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.23 E-value=2.2 Score=40.24 Aligned_cols=109 Identities=13% Similarity=0.237 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy14403 37 EGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELR 116 (168)
Q Consensus 37 ~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk 116 (168)
+.-++..+.++..||.+++..-..-..+-..+..+++..+.+...+..++..+..- ....+++...+.++.
T Consensus 319 l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~---------~~~ysel~e~leel~ 389 (569)
T PRK04778 319 LEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQ---------EIAYSELQEELEEIL 389 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcC---------CCCHHHHHHHHHHHH
Confidence 33344444455555555544322222333344444444444444444444433322 233566666666555
Q ss_pred HhcHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14403 117 AANDIETRHLEE-------QFTERSKKQHQLHELEAEIEKLDMID 154 (168)
Q Consensus 117 ~~N~~~~~~ld~-------iF~eR~~~E~~i~~lE~eie~~~~~~ 154 (168)
.+-+...+..+. +-..-......+..+...+...++..
T Consensus 390 e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l 434 (569)
T PRK04778 390 KQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYL 434 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544444444 44444444445566666666665443
No 34
>PRK11281 hypothetical protein; Provisional
Probab=92.96 E-value=2.5 Score=43.56 Aligned_cols=85 Identities=12% Similarity=0.181 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAK----------EHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIE 109 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~----------e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~ 109 (168)
|+.+++...+++....++++...+ .+.+...+|++..++..++.+.|.+|++||..+--++ +.|+...
T Consensus 85 L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~q--T~PERAQ 162 (1113)
T PRK11281 85 LKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQ--TQPERAQ 162 (1113)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cchHHHH
Confidence 445555555666666666665554 3444577999999999999999999999998876654 3566666
Q ss_pred HHHHHHHHhcHHHHHHH
Q psy14403 110 EEYLELRAANDIETRHL 126 (168)
Q Consensus 110 ~e~~~Lk~~N~~~~~~l 126 (168)
+...+...+-...++++
T Consensus 163 ~~lsea~~RlqeI~~~L 179 (1113)
T PRK11281 163 AALYANSQRLQQIRNLL 179 (1113)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555544444444333
No 35
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.94 E-value=5.6 Score=34.37 Aligned_cols=73 Identities=10% Similarity=0.212 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 72 DKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEK 149 (168)
Q Consensus 72 ekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~ 149 (168)
++.+.+|..|+..++.++.+.+--+..+.. ..+.+..+.. .-..+..+.-..+...++..|.++..+..+...
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~--~~~~l~~~i~---~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~ 160 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELME--EIEKLEKEIE---DLKERLERLEKNLAEAEARLEEEVAEIREEGQE 160 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544443333321 1222222222 233344444455566677777777766665543
No 36
>KOG1029|consensus
Probab=92.89 E-value=4.6 Score=40.82 Aligned_cols=90 Identities=16% Similarity=0.252 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14403 74 RVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMI 153 (168)
Q Consensus 74 rae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~ 153 (168)
--+-...||+.||.+|..||-.+-++. .....+.+.+......+-....++..|-..|..+|..++.|+.++.++-.-
T Consensus 480 q~e~~isei~qlqarikE~q~kl~~l~--~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE 557 (1118)
T KOG1029|consen 480 QRELMISEIDQLQARIKELQEKLQKLA--PEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKE 557 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555444433332 123333333333333443444456667777778888888999999999888
Q ss_pred hhhhhhhhhhcc
Q psy14403 154 DISMWIDISTID 165 (168)
Q Consensus 154 ~~~~~~~~~~~~ 165 (168)
.+|++-+|.+.+
T Consensus 558 ~esk~~eidi~n 569 (1118)
T KOG1029|consen 558 TESKLNEIDIFN 569 (1118)
T ss_pred HHHHHHhhhhHH
Confidence 999998877654
No 37
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.80 E-value=1.9 Score=35.07 Aligned_cols=96 Identities=11% Similarity=0.250 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy14403 38 GLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRA 117 (168)
Q Consensus 38 glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~ 117 (168)
|.|-.++.+++.++.++.+++.. .......++.....|..+|++|...|..-+.+++.++. .+..+.-+++.+..
T Consensus 91 ~el~~~L~~~~~~l~~l~~~~~~---~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~D--E~~~L~l~~~~~e~ 165 (194)
T PF08614_consen 91 GELAQQLVELNDELQELEKELSE---KERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQD--ELQALQLQLNMLEE 165 (194)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 44555666666666666554433 33344555666666666666666666666666655542 34445555555555
Q ss_pred hcHHHHHHHHHH---HHHHHHHHH
Q psy14403 118 ANDIETRHLEEQ---FTERSKKQH 138 (168)
Q Consensus 118 ~N~~~~~~ld~i---F~eR~~~E~ 138 (168)
++.+..++-+.+ ++.++..|.
T Consensus 166 k~~~l~~En~~Lv~Rwm~~k~~eA 189 (194)
T PF08614_consen 166 KLRKLEEENRELVERWMQRKAQEA 189 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554444443 344444443
No 38
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=92.74 E-value=6.6 Score=40.15 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14403 44 IRDLTNEITRLKRQIELS 61 (168)
Q Consensus 44 i~El~~EI~kL~~e~e~~ 61 (168)
++.+..+++.+...+..+
T Consensus 725 ~~~~~~~~~~~~~~~~~l 742 (1163)
T COG1196 725 LAALEEELEQLQSRLEEL 742 (1163)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 39
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=92.25 E-value=8.3 Score=39.46 Aligned_cols=30 Identities=23% Similarity=0.487 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHh
Q psy14403 70 LYDKRVKEMATELTELQGKLSDYNLTMDKV 99 (168)
Q Consensus 70 ~yekrae~La~EI~~LQG~LADyNl~~Dk~ 99 (168)
.+..+.+.+..++..|.+.+..++--+.++
T Consensus 734 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 763 (1163)
T COG1196 734 QLQSRLEELEEELEELEEELEELQERLEEL 763 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555444444444444443
No 40
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=92.25 E-value=5.9 Score=32.94 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 37 EGLLQLKIRDLTNEITRLKRQIELSAK 63 (168)
Q Consensus 37 ~glLR~Ki~El~~EI~kL~~e~e~~~~ 63 (168)
+.-+|.++..+..+-+.|..+++..-.
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666554
No 41
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=91.96 E-value=9.3 Score=37.56 Aligned_cols=123 Identities=21% Similarity=0.253 Sum_probs=87.0
Q ss_pred cchhhhHHHHHHHHH-------HHHHHHHHHHHHHHHH-----------HHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH
Q psy14403 31 QDKRYYEGLLQLKIR-------DLTNEITRLKRQIELS-----------AKEHATFLLYDKRVKEMATELTELQGKLSDY 92 (168)
Q Consensus 31 ~DksYy~glLR~Ki~-------El~~EI~kL~~e~e~~-----------~~e~s~~~~yekrae~La~EI~~LQG~LADy 92 (168)
+..+.....||++++ .+..|+..|+.+.|.+ ++|+.+..++|||..+...-=..|+.+|+.-
T Consensus 435 q~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eE 514 (697)
T PF09726_consen 435 QSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEE 514 (697)
T ss_pred HhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677888844 4555677777777664 4688899999999999999999999999764
Q ss_pred HHHHHHh-----hcCCC-HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14403 93 NLTMDKV-----NTQTN-IADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMI 153 (168)
Q Consensus 93 Nl~~Dk~-----~t~~d-~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~ 153 (168)
=..--.- +..+- .....+-...++.+-.++..++..+=.+=+.+|++++.+|.+++++...
T Consensus 515 rk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 515 RKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4321110 11000 1111133345788888899999999999999999999999999877665
No 42
>PF13514 AAA_27: AAA domain
Probab=91.79 E-value=6.1 Score=40.12 Aligned_cols=111 Identities=21% Similarity=0.286 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcH--
Q psy14403 43 KIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAAND-- 120 (168)
Q Consensus 43 Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~-- 120 (168)
.||.+..++..+++++.......+.|....+..+.+..++..|+.++...+.-.+.+.-=...-.+-.++..+..+..
T Consensus 151 ~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l~~l 230 (1111)
T PF13514_consen 151 EINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAELAEL 230 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 577777788888888888888888888888888888888888888877777777666554444444444444444443
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14403 121 --------IETRHLEEQFTERSKKQHQLHELEAEIEKLDMI 153 (168)
Q Consensus 121 --------~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~ 153 (168)
.....++.+..+....+..+..++.++.....-
T Consensus 231 ~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 271 (1111)
T PF13514_consen 231 GEVPDFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEE 271 (1111)
T ss_pred CCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777666543
No 43
>PRK01156 chromosome segregation protein; Provisional
Probab=91.69 E-value=12 Score=36.63 Aligned_cols=113 Identities=13% Similarity=0.252 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh----------hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc-CCCHHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKEH----------ATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNT-QTNIADI 108 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e~----------s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t-~~d~~~i 108 (168)
++.++..+..+++.+.++++.++... ..|..+..+++.+..+..+|...+.+|+-+..++.. ...++.+
T Consensus 303 ~~~~l~~l~~~l~~l~~~l~~~e~~~~~~e~~~~~~~e~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~ 382 (895)
T PRK01156 303 YKNDIENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEY 382 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555544444433 333333344455555555555555566666555543 2223333
Q ss_pred HHHHHHHHH------------------hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14403 109 EEEYLELRA------------------ANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDM 152 (168)
Q Consensus 109 ~~e~~~Lk~------------------~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~ 152 (168)
..+...+.. ..+.....++.|=.+.......+..++..+.++..
T Consensus 383 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~ 444 (895)
T PRK01156 383 SKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSR 444 (895)
T ss_pred hhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333322 22333344555555666666666666666665553
No 44
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=91.67 E-value=6.1 Score=31.84 Aligned_cols=96 Identities=19% Similarity=0.332 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc------CCCHHHHHHHHHHHHHhcHH
Q psy14403 48 TNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNT------QTNIADIEEEYLELRAANDI 121 (168)
Q Consensus 48 ~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t------~~d~~~i~~e~~~Lk~~N~~ 121 (168)
.+.+..|+.++.. ..++.+..+....+.|..||..|..+|.+= +++++. |.....++++...+..+..
T Consensus 57 ~a~~~eLr~el~~--~~k~~~~~lr~~~e~L~~eie~l~~~L~~e---i~~l~a~~klD~n~eK~~~r~e~~~~~~ki~- 130 (177)
T PF07798_consen 57 KAAIAELRSELQN--SRKSEFAELRSENEKLQREIEKLRQELREE---INKLRAEVKLDLNLEKGRIREEQAKQELKIQ- 130 (177)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-
Confidence 3445555555543 445667888888899999999999888762 344433 2223344444444443322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q psy14403 122 ETRHLEEQFTERSKKQHQLHELEAEIEKLDMIDISMWI 159 (168)
Q Consensus 122 ~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~~~~~~ 159 (168)
.-+...+.++..+..+|+..+- +.-+|+
T Consensus 131 ---------e~~~ki~~ei~~lr~~iE~~K~-~~lr~~ 158 (177)
T PF07798_consen 131 ---------ELNNKIDTEIANLRTEIESLKW-DTLRWL 158 (177)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 2234456677788888887544 444675
No 45
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=91.66 E-value=4.3 Score=39.31 Aligned_cols=44 Identities=25% Similarity=0.484 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHH
Q psy14403 37 EGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLS 90 (168)
Q Consensus 37 ~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LA 90 (168)
...++.|+.++..|+..|+++.+.... ++..|-..|.+|+.+++
T Consensus 24 ~a~~qqr~~qmseev~~L~eEk~~~~~----------~V~eLE~sL~eLk~q~~ 67 (617)
T PF15070_consen 24 SAQWQQRMQQMSEEVRTLKEEKEHDIS----------RVQELERSLSELKNQMA 67 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhhc
Confidence 346788888888888888887765433 35555555555655554
No 46
>KOG0996|consensus
Probab=91.57 E-value=5.9 Score=41.29 Aligned_cols=65 Identities=14% Similarity=0.262 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCC
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKEH-ATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTN 104 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e~-s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d 104 (168)
.+..|.+.+.||..|....+..+++- .....|+++.+.+..|+..++.+|++.-.=+-.+++..+
T Consensus 438 ~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~ 503 (1293)
T KOG0996|consen 438 ARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELD 503 (1293)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888877776653 467789999999999999988888876655555554444
No 47
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=91.47 E-value=2.2 Score=30.92 Aligned_cols=60 Identities=13% Similarity=0.249 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q psy14403 37 EGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTM 96 (168)
Q Consensus 37 ~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~ 96 (168)
+.++|..|.++..-+..|+.+++..+..-.....+.++.+++..-+..|+.+++.++-++
T Consensus 6 Ll~Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL 65 (75)
T PF05531_consen 6 LLVIRQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 568899999999999999999999998888888889999888888888888877776554
No 48
>KOG0996|consensus
Probab=91.28 E-value=19 Score=37.75 Aligned_cols=81 Identities=17% Similarity=0.304 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCC--------HHHHHHHHHHH-----H-HhcHHHHHHHHHHHHHHHHH
Q psy14403 71 YDKRVKEMATELTELQGKLSDYNLTMDKVNTQTN--------IADIEEEYLEL-----R-AANDIETRHLEEQFTERSKK 136 (168)
Q Consensus 71 yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d--------~~~i~~e~~~L-----k-~~N~~~~~~ld~iF~eR~~~ 136 (168)
..-.++.++.++..|.-++|-.=..+.+...+.. +++++.++.++ + ++-+..+..+|.||.++-+.
T Consensus 825 ~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~ 904 (1293)
T KOG0996|consen 825 LTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQA 904 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHH
Confidence 3445667777778888888877777666655322 55666677777 4 77778899999999987554
Q ss_pred -HHHHHHHHHHHHHHh
Q psy14403 137 -QHQLHELEAEIEKLD 151 (168)
Q Consensus 137 -E~~i~~lE~eie~~~ 151 (168)
...+.++-.+|....
T Consensus 905 qk~kv~~~~~~~~~l~ 920 (1293)
T KOG0996|consen 905 QKDKVEKINEQLDKLE 920 (1293)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 345555555555553
No 49
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=91.27 E-value=4.6 Score=29.75 Aligned_cols=37 Identities=5% Similarity=0.242 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc
Q psy14403 65 HATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNT 101 (168)
Q Consensus 65 ~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t 101 (168)
-..|..|+.....++..+..|..++.....+.+-+..
T Consensus 5 ~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~ 41 (105)
T cd00632 5 LAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEK 41 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4568888889999999999999999999999988875
No 50
>PRK11637 AmiB activator; Provisional
Probab=90.90 E-value=7.7 Score=35.07 Aligned_cols=20 Identities=5% Similarity=0.297 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIE 59 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e 59 (168)
++.++.++..+|..+++++.
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~ 64 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVR 64 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555444
No 51
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=90.86 E-value=7.9 Score=32.48 Aligned_cols=102 Identities=16% Similarity=0.282 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHH
Q psy14403 42 LKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDI 121 (168)
Q Consensus 42 ~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~ 121 (168)
.||..+..||......+...... +...+++++..-.|+..|+.++..+.--+++...- ...+...+. .
T Consensus 1 kK~~~l~~eld~~~~~~~~~~~~---l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eer--L~~~~~kL~-------~ 68 (237)
T PF00261_consen 1 KKIQQLKDELDEAEERLEEAEEK---LKEAEKRAEKAEAEVASLQRRIQLLEEELERAEER--LEEATEKLE-------E 68 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC--CCHHHHHHH-------H
T ss_pred CchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHH-------H
Confidence 37888888888888777766544 66678888888888888888888777666665542 223333333 3
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhhh
Q psy14403 122 ETRHLEEQFTERSKK-------QHQLHELEAEIEKLDMIDI 155 (168)
Q Consensus 122 ~~~~ld~iF~eR~~~-------E~~i~~lE~eie~~~~~~~ 155 (168)
..+.+|+....++.. +..+..+|.++........
T Consensus 69 ~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~e 109 (237)
T PF00261_consen 69 AEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAE 109 (237)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344443333333 3455555555555544443
No 52
>KOG0995|consensus
Probab=90.78 E-value=13 Score=36.13 Aligned_cols=110 Identities=22% Similarity=0.334 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHH-------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH---hHHHHHHHHHHhh--cCCCHHHHHHHH
Q psy14403 45 RDLTNEITRLKR-------QIELSAKEHATFLLYDKRVKEMATELTELQG---KLSDYNLTMDKVN--TQTNIADIEEEY 112 (168)
Q Consensus 45 ~El~~EI~kL~~-------e~e~~~~e~s~~~~yekrae~La~EI~~LQG---~LADyNl~~Dk~~--t~~d~~~i~~e~ 112 (168)
+-+..+|+.|++ ++....++.+.-.+.+++...|...+..+|. ++.+-+-.+++.= .+...+..+.+.
T Consensus 231 ~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~ 310 (581)
T KOG0995|consen 231 TSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEI 310 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334456665554 4455556666666667777666666666554 2233333333331 234577788888
Q ss_pred HHHHHhcHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14403 113 LELRAANDIETRHL----------EEQFTERSKKQHQLHELEAEIEKLDMID 154 (168)
Q Consensus 113 ~~Lk~~N~~~~~~l----------d~iF~eR~~~E~~i~~lE~eie~~~~~~ 154 (168)
..|+..|+...+.| +.+=.+|.+....+.++..++..+++.+
T Consensus 311 e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~v 362 (581)
T KOG0995|consen 311 EKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEV 362 (581)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877655 4567788888888888877777766544
No 53
>KOG4674|consensus
Probab=90.77 E-value=7.8 Score=42.01 Aligned_cols=97 Identities=18% Similarity=0.319 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-----HHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHH
Q psy14403 39 LLQLKIRDLTNEITRLKRQIELSAKEHATFLLY-----DKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYL 113 (168)
Q Consensus 39 lLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~y-----ekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~ 113 (168)
-|..++.+.++|+.+|..+.+...+.+.....= -.-++.|..||..|.++|. +...-.+++...++
T Consensus 1268 el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~---------~ke~~~~el~~~~~ 1338 (1822)
T KOG4674|consen 1268 ELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELE---------EKENLIAELKKELN 1338 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
Confidence 455666666667777777766665555444433 2246667777877777776 11122345555555
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 114 ELRAANDIETRHLEEQFTERSKKQHQLHELEAEI 147 (168)
Q Consensus 114 ~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~ei 147 (168)
.++ ....+.+|.+=.+++.+...+++++.-.
T Consensus 1339 ~~q---~~~k~qld~l~~e~~~lt~~~~ql~~~~ 1369 (1822)
T KOG4674|consen 1339 RLQ---EKIKKQLDELNNEKANLTKELEQLEDLK 1369 (1822)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555 4555667777777776666666555433
No 54
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.74 E-value=3.2 Score=36.49 Aligned_cols=113 Identities=18% Similarity=0.257 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy14403 37 EGLLQLKIRDLTNEITRLKRQIELSA-KEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLEL 115 (168)
Q Consensus 37 ~glLR~Ki~El~~EI~kL~~e~e~~~-~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~L 115 (168)
..-|+.+..+|..|+..|+.-....+ .+...+..+..+..++..+|..++..|++.+.=+..+.. ..+++.++..++
T Consensus 179 ~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~--~i~~~~~~k~~l 256 (325)
T PF08317_consen 179 LPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEE--KIEELEEQKQEL 256 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 34577888899999999988666443 666777777777777777777666666665555444443 234444444444
Q ss_pred HHhcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhh
Q psy14403 116 RAANDIETRHLEEQFTE-RSKKQHQLHELEAEIEKLDMIDI 155 (168)
Q Consensus 116 k~~N~~~~~~ld~iF~e-R~~~E~~i~~lE~eie~~~~~~~ 155 (168)
.++-.... .+-.+ |.=-..++..|..++..++.+--
T Consensus 257 ~~eI~e~~----~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~g 293 (325)
T PF08317_consen 257 LAEIAEAE----KIREECRGWTRSEVKRLKAKVDALEKLTG 293 (325)
T ss_pred HHHHHHHH----HHHHHhcCCCHHHHHHHHHHHHHHHHHHC
Confidence 44433333 23322 22245578888888777776543
No 55
>KOG0250|consensus
Probab=90.66 E-value=13 Score=38.41 Aligned_cols=112 Identities=23% Similarity=0.365 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHH
Q psy14403 36 YEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRV-KEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLE 114 (168)
Q Consensus 36 y~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekra-e~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~ 114 (168)
=.+-+..+++++.+.|.++++..+.+++.=+.+ ++.. ..+..++.+.++++-..+.-+.++.. -...|..++++
T Consensus 352 e~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~---~~~~~~~~~~~~~e~e~k~~~L~~evek~e~--~~~~L~~e~~~ 426 (1074)
T KOG0250|consen 352 EVNDLKEEIREIENSIRKLKKEVDRLEKQIADL---EKQTNNELGSELEERENKLEQLKKEVEKLEE--QINSLREELNE 426 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 345566777788888888888888777755443 3333 66777777777777777877877776 56778888888
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14403 115 LRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDM 152 (168)
Q Consensus 115 Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~ 152 (168)
++.......++.+.+=.........+...-.+|+.++.
T Consensus 427 ~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 427 VKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888877777777777777777766654
No 56
>PRK01156 chromosome segregation protein; Provisional
Probab=90.65 E-value=12 Score=36.68 Aligned_cols=48 Identities=19% Similarity=0.242 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHH
Q psy14403 43 KIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLS 90 (168)
Q Consensus 43 Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LA 90 (168)
++.++..+|..+..++..+......+...+.++..+..+...+.+++.
T Consensus 644 ~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 691 (895)
T PRK01156 644 LIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALD 691 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433333333333333333333333333333
No 57
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=90.63 E-value=3.6 Score=39.26 Aligned_cols=56 Identities=13% Similarity=0.186 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q psy14403 43 KIRDLTNEITRLKRQIELSAK------EHATFLLYDKRVKEMATELTELQGKLSDYNLTMDK 98 (168)
Q Consensus 43 Ki~El~~EI~kL~~e~e~~~~------e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk 98 (168)
.+.++..++.++..+++.+++ +...+..|.++.+.+..++.+++.++.-.+--+..
T Consensus 392 ~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~ 453 (650)
T TIGR03185 392 AKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLET 453 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555 22455555555555555555555555544444433
No 58
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=90.39 E-value=9.6 Score=31.87 Aligned_cols=87 Identities=20% Similarity=0.274 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKE---------HATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEE 110 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e---------~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~ 110 (168)
++..|...-.+|.++++++...... +.++..++.+....-..+.+++.+|+++|.-+..+.+ .|+-+..
T Consensus 43 ~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~--~p~~aq~ 120 (240)
T PF12795_consen 43 YQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQT--RPERAQQ 120 (240)
T ss_pred HHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cHHHHHH
Confidence 4556666667777777777777554 5567889999999999999999999999998877765 7888888
Q ss_pred HHHHHHHhcHHHHHHHHH
Q psy14403 111 EYLELRAANDIETRHLEE 128 (168)
Q Consensus 111 e~~~Lk~~N~~~~~~ld~ 128 (168)
...+...+-......+..
T Consensus 121 ~l~~~~~~l~ei~~~L~~ 138 (240)
T PF12795_consen 121 QLSEARQRLQEIRNQLQN 138 (240)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 888877777766666554
No 59
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=90.20 E-value=1.6 Score=32.33 Aligned_cols=105 Identities=18% Similarity=0.248 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH-------------------HHHhhcCCCH-
Q psy14403 46 DLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLT-------------------MDKVNTQTNI- 105 (168)
Q Consensus 46 El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~-------------------~Dk~~t~~d~- 105 (168)
++......|+.++..+.+..+.+.....+++.+..+|..|.....+.-++ +=.+.+|.=+
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ve 82 (129)
T cd00890 3 ELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVE 82 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEEE
Confidence 44555566666666666666666666677777777777776443332221 1111111111
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 106 ADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKL 150 (168)
Q Consensus 106 ~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~ 150 (168)
-++.+-..-++.+-+...+.++.+-..-..+...+..++..|++.
T Consensus 83 ~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 83 KSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 122333345566666667777777777777777777777766654
No 60
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=90.08 E-value=13 Score=37.25 Aligned_cols=88 Identities=15% Similarity=0.257 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh-----------HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhh-----cCCCHHH
Q psy14403 44 IRDLTNEITRLKRQIELSAKEHA-----------TFLLYDKRVKEMATELTELQGKLSDYNLTMDKVN-----TQTNIAD 107 (168)
Q Consensus 44 i~El~~EI~kL~~e~e~~~~e~s-----------~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~-----t~~d~~~ 107 (168)
+..-.+||..++.+++......+ ++...+.++.-|..+|..|..+|-..|..++|.+ ..-+.+-
T Consensus 296 L~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~ 375 (775)
T PF10174_consen 296 LSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSR 375 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555566665544443 3456788899999999999999999999999986 4445555
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHH
Q psy14403 108 IEEEYLELRAANDIETRHLEEQFT 131 (168)
Q Consensus 108 i~~e~~~Lk~~N~~~~~~ld~iF~ 131 (168)
+..++.+|+..++.....|..+-.
T Consensus 376 ~~~Ei~~l~d~~d~~e~ki~~Lq~ 399 (775)
T PF10174_consen 376 LQGEIEDLRDMLDKKERKINVLQK 399 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666665555544433
No 61
>PRK04863 mukB cell division protein MukB; Provisional
Probab=89.96 E-value=19 Score=38.50 Aligned_cols=68 Identities=15% Similarity=0.268 Sum_probs=34.6
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q psy14403 29 QVQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHAT---FLLYDKRVKEMATELTELQGKLSDYNLTM 96 (168)
Q Consensus 29 QV~DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~---~~~yekrae~La~EI~~LQG~LADyNl~~ 96 (168)
.+.+...-+.-+...+.+|...+++|.++.+...+-... +..+......+...+.+|+.+|......+
T Consensus 301 kLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeL 371 (1486)
T PRK04863 301 QLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVV 371 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666677776666665543222 12223333444444444444444444444
No 62
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=89.67 E-value=15 Score=32.89 Aligned_cols=103 Identities=24% Similarity=0.343 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh----------hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy14403 46 DLTNEITRLKRQIELSAKEH----------ATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLEL 115 (168)
Q Consensus 46 El~~EI~kL~~e~e~~~~e~----------s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~L 115 (168)
++...|..|.++++...+-. +.-..+-..++++-.+|..|-.+..-|---|-++-. ..++|+..+..+
T Consensus 135 ~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~--~~De~Rkeade~ 212 (294)
T COG1340 135 ELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFE--EADELRKEADEL 212 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 44455555555554444322 222233344444444555555444444444444333 467788888888
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 116 RAANDIETRHLEEQFTERSKKQHQLHELEAEIEKL 150 (168)
Q Consensus 116 k~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~ 150 (168)
++.-......+|++-.+.......|+.++..|..+
T Consensus 213 he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l 247 (294)
T COG1340 213 HEEFVELSKKIDELHEEFRNLQNELRELEKKIKAL 247 (294)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888877643
No 63
>KOG0995|consensus
Probab=89.66 E-value=11 Score=36.49 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy14403 107 DIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMIDISMW 158 (168)
Q Consensus 107 ~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~~~~~ 158 (168)
-.++....++.++......+..+=.+=..+|+++..|..+...++..++-.=
T Consensus 277 K~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~ 328 (581)
T KOG0995|consen 277 KFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQG 328 (581)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444556678888888888999989999999999999999999998887763
No 64
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=89.41 E-value=8.1 Score=29.59 Aligned_cols=91 Identities=16% Similarity=0.272 Sum_probs=64.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCC----------HH------------------------
Q psy14403 61 SAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTN----------IA------------------------ 106 (168)
Q Consensus 61 ~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d----------~~------------------------ 106 (168)
++.-...|..|+...+.|...+..|...+.+|+.+.+.+..=.. ..
T Consensus 8 l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~g~~ 87 (140)
T PRK03947 8 LEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGAGYS 87 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCCCEE
Confidence 33344556777777888888888888888888888866643111 01
Q ss_pred ---HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14403 107 ---DIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLD 151 (168)
Q Consensus 107 ---~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~ 151 (168)
++.+-...|+.+-+...+.++.+...=..+...+..+...++++.
T Consensus 88 vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 88 AEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666777777778888888888888888888888887777654
No 65
>KOG2751|consensus
Probab=89.36 E-value=4.7 Score=37.77 Aligned_cols=58 Identities=28% Similarity=0.386 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q psy14403 104 NIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMIDISMWIDI 161 (168)
Q Consensus 104 d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~~~~~~~~ 161 (168)
+.+++..+...++..+.+.-+++..+-+++.+....+.+++.+-++....-...|=+.
T Consensus 177 ~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey 234 (447)
T KOG2751|consen 177 SEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREY 234 (447)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888888889999999999888888888888888777777777543
No 66
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=89.01 E-value=10 Score=30.19 Aligned_cols=16 Identities=13% Similarity=0.576 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14403 43 KIRDLTNEITRLKRQI 58 (168)
Q Consensus 43 Ki~El~~EI~kL~~e~ 58 (168)
++.+.++-+..+.+++
T Consensus 82 e~~~~~~~l~~l~~el 97 (191)
T PF04156_consen 82 ELSELQQQLQQLQEEL 97 (191)
T ss_pred hHHhHHHHHHHHHHHH
Confidence 3333333333333333
No 67
>PRK04863 mukB cell division protein MukB; Provisional
Probab=89.01 E-value=31 Score=36.92 Aligned_cols=49 Identities=16% Similarity=0.094 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 102 QTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKL 150 (168)
Q Consensus 102 ~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~ 150 (168)
..+.+++........++-+.....+..+=.+-...+..+..++......
T Consensus 434 ~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l 482 (1486)
T PRK04863 434 DLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLV 482 (1486)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777776666666666655555555555555555444443
No 68
>PF14282 FlxA: FlxA-like protein
Probab=88.94 E-value=1.9 Score=32.44 Aligned_cols=56 Identities=13% Similarity=0.286 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q psy14403 41 QLKIRDLTNEITRLKRQIELSAKE-HATFLLYDKRVKEMATELTELQGKLSDYNLTM 96 (168)
Q Consensus 41 R~Ki~El~~EI~kL~~e~e~~~~e-~s~~~~yekrae~La~EI~~LQG~LADyNl~~ 96 (168)
=..|..|..-|..|++++..+..+ ...=-.-.++...|-.+|..|+++|+-...-.
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777778888887777773 33555667889999999999999998654433
No 69
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=88.58 E-value=19 Score=32.80 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy14403 46 DLTNEITRLKRQIEL 60 (168)
Q Consensus 46 El~~EI~kL~~e~e~ 60 (168)
.+..++..+..++..
T Consensus 169 ~~~~~~~~~~~~i~~ 183 (457)
T TIGR01000 169 AAEKTKAQLDQQISK 183 (457)
T ss_pred HHHhhHHHHHHHHHH
Confidence 333333333333333
No 70
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=88.56 E-value=18 Score=32.53 Aligned_cols=60 Identities=28% Similarity=0.321 Sum_probs=50.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------hHHHHHHHHHHHHHHHHHHHhHhHH
Q psy14403 31 QDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEH------------ATFLLYDKRVKEMATELTELQGKLS 90 (168)
Q Consensus 31 ~DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~------------s~~~~yekrae~La~EI~~LQG~LA 90 (168)
++.-|.+.-|+.+|..+..|+...+.+++.+.++. .-...+.|+.+.|+.|=+.||.+|.
T Consensus 131 ~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 131 QEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34678999999999999999888877777766653 4567899999999999999999986
No 71
>PF15294 Leu_zip: Leucine zipper
Probab=88.47 E-value=15 Score=32.49 Aligned_cols=71 Identities=20% Similarity=0.296 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH-------HHHHhhcCCCHHHHHHHHHHHHHhc
Q psy14403 47 LTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNL-------TMDKVNTQTNIADIEEEYLELRAAN 119 (168)
Q Consensus 47 l~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl-------~~Dk~~t~~d~~~i~~e~~~Lk~~N 119 (168)
++.||.+|+.|.+.+. +-+...++++-..+.|=+.|+.+|.|.-. -.+.+....++.++++....++..-
T Consensus 130 l~kEi~rLq~EN~kLk---~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ 206 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLK---ERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSEL 206 (278)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHH
Confidence 5666777776666553 34556666666666666666666666555 2223344567888888888887543
Q ss_pred H
Q psy14403 120 D 120 (168)
Q Consensus 120 ~ 120 (168)
+
T Consensus 207 e 207 (278)
T PF15294_consen 207 E 207 (278)
T ss_pred H
Confidence 3
No 72
>KOG0243|consensus
Probab=88.28 E-value=11 Score=38.77 Aligned_cols=71 Identities=27% Similarity=0.460 Sum_probs=47.3
Q ss_pred CCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH------HHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q psy14403 24 GPGFRQVQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFL------LYDKRVKEMATELTELQGKLSDYNLTMD 97 (168)
Q Consensus 24 Gp~~RQV~DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~------~yekrae~La~EI~~LQG~LADyNl~~D 97 (168)
+|..-|-.-|.=+ +.++..||+||+.++-....-+..|. +-+++..+.+.-|.+|..+|+-+=.-+.
T Consensus 393 KPevNQkl~K~~l-------lKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~ 465 (1041)
T KOG0243|consen 393 KPEVNQKLMKKTL-------LKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLK 465 (1041)
T ss_pred CCccchHHHHHHH-------HHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5665555555544 45889999999999988777665554 3344566677777777777766655555
Q ss_pred Hhhc
Q psy14403 98 KVNT 101 (168)
Q Consensus 98 k~~t 101 (168)
.+..
T Consensus 466 ~~~e 469 (1041)
T KOG0243|consen 466 DLTE 469 (1041)
T ss_pred HHHH
Confidence 4443
No 73
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=88.26 E-value=14 Score=30.95 Aligned_cols=80 Identities=20% Similarity=0.260 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 70 LYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEK 149 (168)
Q Consensus 70 ~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~ 149 (168)
..+.++..|-.+|+.+-+.|-.+=....+.+. ..+.++..+..|..+.......++..=..-..++..+..+|.++..
T Consensus 138 ~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~--re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~ 215 (237)
T PF00261_consen 138 AAESKIKELEEELKSVGNNLKSLEASEEKASE--REDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEK 215 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhchhHHHHHHHHHHHHHHHHHhhhhhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443332 2244445555555555555555555555555555566666655554
Q ss_pred Hh
Q psy14403 150 LD 151 (168)
Q Consensus 150 ~~ 151 (168)
.+
T Consensus 216 ~k 217 (237)
T PF00261_consen 216 EK 217 (237)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 74
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=88.23 E-value=7.5 Score=31.34 Aligned_cols=76 Identities=17% Similarity=0.281 Sum_probs=51.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-----HHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHH
Q psy14403 34 RYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLY-----DKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADI 108 (168)
Q Consensus 34 sYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~y-----ekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i 108 (168)
+-|++++=..+--+..++-+++++.+...+....-..- ....+.+..||++|..+|.. .
T Consensus 110 ~LfL~l~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~----------------~ 173 (192)
T PF05529_consen 110 ALFLSLVIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEK----------------K 173 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH----------------H
Confidence 45677777777788888888888888777766544432 33556677888888888877 4
Q ss_pred HHHHHHHHHhcHHHHHH
Q psy14403 109 EEEYLELRAANDIETRH 125 (168)
Q Consensus 109 ~~e~~~Lk~~N~~~~~~ 125 (168)
+.++..|+.|.+...++
T Consensus 174 ~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 174 EKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 45555666665555443
No 75
>KOG0161|consensus
Probab=88.13 E-value=26 Score=38.46 Aligned_cols=112 Identities=17% Similarity=0.268 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIEL----SAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLEL 115 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~----~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~L 115 (168)
.+.|.+.+..-.++|..+++. +++++....-.||....|..|++.+|..+.+++.....+.. .....+.++..+
T Consensus 1004 ~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~--~l~kke~El~~l 1081 (1930)
T KOG0161|consen 1004 EEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDN--QLKKKESELSQL 1081 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 344555555555555555543 44566666667777777777777777777777766666643 334455566666
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14403 116 RAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMI 153 (168)
Q Consensus 116 k~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~ 153 (168)
..+++.....+-.+=...++.+..+..|+++++.+...
T Consensus 1082 ~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~ 1119 (1930)
T KOG0161|consen 1082 QSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERAS 1119 (1930)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666665544
No 76
>KOG0161|consensus
Probab=87.90 E-value=29 Score=38.19 Aligned_cols=104 Identities=18% Similarity=0.387 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAAN 119 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N 119 (168)
|+.+-.++..+...+..+++..+..++. .++.+..+..++.+|..++.|+=....|+.. +....++....|...-
T Consensus 899 ~~~~k~~le~~l~~~~~~~e~~ee~~~~---le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~--Ek~~~e~~~~~l~~e~ 973 (1930)
T KOG0161|consen 899 LRAEKQELEKELKELKERLEEEEEKNAE---LERKKRKLEQEVQELKEQLEELELTLQKLEL--EKNAAENKLKNLEEEI 973 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443332 2333333335555555555555444444433 3334444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 120 DIETRHLEEQFTERSKKQHQLHELEAEIE 148 (168)
Q Consensus 120 ~~~~~~ld~iF~eR~~~E~~i~~lE~eie 148 (168)
....+.++.+-.+|+..|+.++++-..+.
T Consensus 974 ~~~~e~~~kL~kekk~lEe~~~~l~~~l~ 1002 (1930)
T KOG0161|consen 974 NSLDENISKLSKEKKELEERIRELQDDLQ 1002 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555554444444433
No 77
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=87.85 E-value=4.8 Score=32.22 Aligned_cols=115 Identities=19% Similarity=0.237 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHH----HHHHHHHHhhcCCCHHHHHHHHHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLS----DYNLTMDKVNTQTNIADIEEEYLEL 115 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LA----DyNl~~Dk~~t~~d~~~i~~e~~~L 115 (168)
.+.+...+..|...++.++...+..=..|..=-.-.++|..+|.+||.+.. +|-.-+..+.- -..|...+...
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~---~~ai~~al~~a 94 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKK---DSAIKSALKGA 94 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHc
Confidence 677888888888888888888776666555544577888888888888877 55554444433 23455555555
Q ss_pred HHhcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q psy14403 116 RAANDIET-RHLEEQFTERSKKQHQLHELEAEIEKLDMIDISMWI 159 (168)
Q Consensus 116 k~~N~~~~-~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~~~~~~ 159 (168)
+++|...= ..|| +-.-.-.-+ .+.-|+++|+.++.++..+|-
T Consensus 95 kakn~~av~allD-~d~l~l~~d-g~~Gldeqi~~lkes~~yLF~ 137 (155)
T PF06810_consen 95 KAKNPKAVKALLD-LDKLKLDDD-GLKGLDEQIKALKESDPYLFE 137 (155)
T ss_pred CCCCHHHHHHhcC-HHHeeeCCC-ccccHHHHHHHHHhcCchhcc
Confidence 66664321 2221 122222233 378889999988888765553
No 78
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=87.78 E-value=12 Score=29.74 Aligned_cols=84 Identities=20% Similarity=0.276 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q psy14403 39 LLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAA 118 (168)
Q Consensus 39 lLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~ 118 (168)
-|..||.|=+.|+.+|+.- .........++..+...+..+...+..+|++..-.+.+++. ....+..+...++..
T Consensus 53 ~l~~kIeERn~eL~~Lk~~---~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~--~l~~~k~~r~k~~~~ 127 (177)
T PF13870_consen 53 QLNEKIEERNKELLKLKKK---IGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLRE--ELYRVKKERDKLRKQ 127 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 3667777777888777744 45566778889999999999999999999999999888876 455666677777777
Q ss_pred cHHHHHHHH
Q psy14403 119 NDIETRHLE 127 (168)
Q Consensus 119 N~~~~~~ld 127 (168)
|.+.+.+..
T Consensus 128 ~~~l~~~~~ 136 (177)
T PF13870_consen 128 NKKLRQQGG 136 (177)
T ss_pred HHHHHHhcC
Confidence 777665543
No 79
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=87.66 E-value=17 Score=35.77 Aligned_cols=99 Identities=20% Similarity=0.308 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q psy14403 39 LLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAA 118 (168)
Q Consensus 39 lLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~ 118 (168)
-+|.+..++-.||.+|..|+...+.... .+|+... +|..|+ +- +..|.+.+-..+..|+++
T Consensus 542 ~~r~r~~~lE~E~~~lr~elk~kee~~~---~~e~~~~-----------~lr~~~----~e-~~~~~e~L~~aL~amqdk 602 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRRELKQKEEQIR---ELESELQ-----------ELRKYE----KE-SEKDTEVLMSALSAMQDK 602 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-----------HHHHHH----hh-hhhhHHHHHHHHHHHHHH
Confidence 5899999999999999988766543221 2222221 112222 11 234555555555555555
Q ss_pred cHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy14403 119 NDIET---------------------RHLEEQFTERSKKQHQLHELEAEIEKLDMIDIS 156 (168)
Q Consensus 119 N~~~~---------------------~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~~~ 156 (168)
|.+++ .+++.+=-....+|.+|.+|-..|.+.+..-.+
T Consensus 603 ~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~p~ 661 (697)
T PF09726_consen 603 NQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVMPS 661 (697)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 55544 444444445555566666666666666555443
No 80
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=87.59 E-value=9.8 Score=28.34 Aligned_cols=88 Identities=16% Similarity=0.292 Sum_probs=56.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCC-C--------H----HHHHHHHHHHHHhcHHHHHHHHHH
Q psy14403 63 KEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQT-N--------I----ADIEEEYLELRAANDIETRHLEEQ 129 (168)
Q Consensus 63 ~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~-d--------~----~~i~~e~~~Lk~~N~~~~~~ld~i 129 (168)
..-..|..|++....++..+..|++++....++++-+..=. | + .++..-...|+.+-+.....+..+
T Consensus 7 ~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~l 86 (110)
T TIGR02338 7 NQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTL 86 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888899999999999999999999988886511 1 1 123333344555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14403 130 FTERSKKQHQLHELEAEIEKL 150 (168)
Q Consensus 130 F~eR~~~E~~i~~lE~eie~~ 150 (168)
=..-..++..+.+++.+++++
T Consensus 87 ek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 87 QRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555566666666655543
No 81
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=87.57 E-value=13 Score=29.69 Aligned_cols=93 Identities=18% Similarity=0.245 Sum_probs=48.4
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q psy14403 61 SAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQL 140 (168)
Q Consensus 61 ~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i 140 (168)
+.+..+.-.+++.++..|-.|+...|..+.. +..|.=|+...++.+..+...+.....+....++.+=.++......+
T Consensus 12 LK~~~~e~dsle~~v~~LEreLe~~q~~~e~--~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~l 89 (140)
T PF10473_consen 12 LKESESEKDSLEDHVESLERELEMSQENKEC--LILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKEL 89 (140)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444455555555555555555442 34444444445555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhhhhh
Q psy14403 141 HELEAEIEKLDMIDI 155 (168)
Q Consensus 141 ~~lE~eie~~~~~~~ 155 (168)
++....|..+..+..
T Consensus 90 q~~q~kv~eLE~~~~ 104 (140)
T PF10473_consen 90 QKKQEKVSELESLNS 104 (140)
T ss_pred HHHHHHHHHHHHHhH
Confidence 555555555544443
No 82
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=87.57 E-value=13 Score=29.62 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHH
Q psy14403 105 IADIEEEYLELRAANDIETRHLEEQF 130 (168)
Q Consensus 105 ~~~i~~e~~~Lk~~N~~~~~~ld~iF 130 (168)
..+.......+........+.+-++|
T Consensus 125 ~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 125 LKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444
No 83
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=87.50 E-value=16 Score=30.63 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=25.3
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 32 DKRYYEGLLQLKIRDLTNEITRLKRQIEL 60 (168)
Q Consensus 32 DksYy~glLR~Ki~El~~EI~kL~~e~e~ 60 (168)
|...|++-|+.+..+-..+|.+|.++...
T Consensus 1 e~~~~l~yL~~~~~e~~~~i~~L~~q~~~ 29 (206)
T PF14988_consen 1 ENKEFLEYLKKKDEEKEKKIEKLWKQYIQ 29 (206)
T ss_pred CcHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999887543
No 84
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=87.26 E-value=2.9 Score=36.31 Aligned_cols=82 Identities=11% Similarity=0.296 Sum_probs=56.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 63 KEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHE 142 (168)
Q Consensus 63 ~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~ 142 (168)
.-..-+.+|..++..|..+|..|+.++|+...-++.++.+.+..+-.. .+- ..+.....-+|++. +.-|++|++
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~--~~~-~~~~~~~~~~de~I---~rEeeEIre 250 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDD--EES-EESSEDSVDTDEDI---RREEEEIRE 250 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc--ccc-ccccccchhHHHHH---HHHHHHHHH
Confidence 345567889999999999999999999999999999977555444332 111 33333334444443 234568889
Q ss_pred HHHHHHHH
Q psy14403 143 LEAEIEKL 150 (168)
Q Consensus 143 lE~eie~~ 150 (168)
||.++.++
T Consensus 251 LE~k~~~L 258 (259)
T PF08657_consen 251 LERKKREL 258 (259)
T ss_pred HHHHHHhc
Confidence 99888765
No 85
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=87.01 E-value=26 Score=35.83 Aligned_cols=81 Identities=10% Similarity=0.207 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 65 HATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELE 144 (168)
Q Consensus 65 ~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE 144 (168)
.-.+...|+..+.+-.|+-+|+.++++.|..+..+-+|...++++.++.-++.+-...++.-=.+-.-++-.++.++..+
T Consensus 773 e~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE~g~~~a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~~k 852 (984)
T COG4717 773 EEELALLEEAIDALDEEVEELHAQVAALSRQIAQLEGGGTVAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRLFK 852 (984)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999988888776
Q ss_pred H
Q psy14403 145 A 145 (168)
Q Consensus 145 ~ 145 (168)
+
T Consensus 853 e 853 (984)
T COG4717 853 E 853 (984)
T ss_pred h
Confidence 4
No 86
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=87.01 E-value=21 Score=31.56 Aligned_cols=123 Identities=22% Similarity=0.293 Sum_probs=94.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-------HHHHHHHHHHHHhHhHHHHH-------------
Q psy14403 34 RYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDK-------RVKEMATELTELQGKLSDYN------------- 93 (168)
Q Consensus 34 sYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yek-------rae~La~EI~~LQG~LADyN------------- 93 (168)
-||-.+++.|--++.-=-.||.........+.+-...+.. ++..+...-.+|..+|.=|-
T Consensus 156 ~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kS 235 (309)
T PF09728_consen 156 EHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKS 235 (309)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4778888888777777778888888888888888888888 88888888888888877663
Q ss_pred -HHHHHhhcCC-----CHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy14403 94 -LTMDKVNTQT-----NIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMIDIS 156 (168)
Q Consensus 94 -l~~Dk~~t~~-----d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~~~ 156 (168)
-+++.+...+ -+..++.+...++.+.+.-...|-.+-.+|...+..+..+..+++.+..+--+
T Consensus 236 Ne~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRa 304 (309)
T PF09728_consen 236 NEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRA 304 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222211 14456666667777888888889999999999999999999999998877543
No 87
>KOG0804|consensus
Probab=86.69 E-value=30 Score=32.94 Aligned_cols=52 Identities=19% Similarity=0.265 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHHhcHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14403 102 QTNIADIEEEYLELRAANDIETR-----------HLEEQFTERSKKQHQLHELEAEIEKLDMI 153 (168)
Q Consensus 102 ~~d~~~i~~e~~~Lk~~N~~~~~-----------~ld~iF~eR~~~E~~i~~lE~eie~~~~~ 153 (168)
++....+.++.+++++-|....+ ..+..=..+..++++|+.|++|+..++.-
T Consensus 388 q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~ 450 (493)
T KOG0804|consen 388 QTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFF 450 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhee
Confidence 34445555555555555544333 23334456778888999999999988753
No 88
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=86.69 E-value=9.3 Score=27.15 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Q psy14403 37 EGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQG 87 (168)
Q Consensus 37 ~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG 87 (168)
+..|-.||..+..-|..|+.+++.+...++.+. ...+.|..|...|+.
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~---~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELK---EENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHH
Confidence 346788899999999999999998888887766 677778888887773
No 89
>KOG0994|consensus
Probab=86.67 E-value=37 Score=36.17 Aligned_cols=125 Identities=14% Similarity=0.114 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc-CCC----HHHHHH
Q psy14403 36 YEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNT-QTN----IADIEE 110 (168)
Q Consensus 36 y~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t-~~d----~~~i~~ 110 (168)
-++.|-.++.+|..++..-..+.+.+++...+-.. +|....+.++.||..+.--+-++.|--. ... .+.|++
T Consensus 1620 ~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~---~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~ 1696 (1758)
T KOG0994|consen 1620 QLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKE---QALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRT 1696 (1758)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 35666666667766666666666555554433222 2333333344555555444444443322 222 678899
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy14403 111 EYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMIDISMWIDIST 163 (168)
Q Consensus 111 e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~~~~~~~~~~ 163 (168)
++.+|-.+....-+.|+.+=..--..|..|-..+.+|-.+..-++|.-+||+-
T Consensus 1697 eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~~ 1749 (1758)
T KOG0994|consen 1697 EAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHINE 1749 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 99999888888888888888777777778888888888888888888888763
No 90
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=86.59 E-value=8.3 Score=29.91 Aligned_cols=94 Identities=19% Similarity=0.338 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy14403 37 EGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELR 116 (168)
Q Consensus 37 ~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk 116 (168)
+.-|.+.++-+-.|+..|+.++..+ ++.-+.++.||-.|-.+......... .+..++.++.+|.
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l----------~~~r~~l~~Eiv~l~~~~e~~~~~~~------~~~~L~~el~~l~ 81 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARL----------EAERDELREEIVKLMEENEELRALKK------EVEELEQELEELQ 81 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 3445555555555555555544443 44445666776665554444332222 2233444444444
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14403 117 AANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMI 153 (168)
Q Consensus 117 ~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~ 153 (168)
. ..+.+..-=-++.+.+.+|+..|..++.+
T Consensus 82 ~-------ry~t~LellGEK~E~veEL~~Dv~DlK~m 111 (120)
T PF12325_consen 82 Q-------RYQTLLELLGEKSEEVEELRADVQDLKEM 111 (120)
T ss_pred H-------HHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 3 33433333445667777777777777654
No 91
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=86.44 E-value=5.1 Score=29.29 Aligned_cols=53 Identities=23% Similarity=0.294 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q psy14403 42 LKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNL 94 (168)
Q Consensus 42 ~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl 94 (168)
.++.++..+-+.+.+++-...+.......+-.++..+..+|++|+.++..+..
T Consensus 43 ~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~ 95 (108)
T PF02403_consen 43 QELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEE 95 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333333344444444555555555544444433
No 92
>KOG1962|consensus
Probab=86.15 E-value=7 Score=33.44 Aligned_cols=25 Identities=8% Similarity=0.105 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHH
Q psy14403 108 IEEEYLELRAANDIETRHLEEQFTE 132 (168)
Q Consensus 108 i~~e~~~Lk~~N~~~~~~ld~iF~e 132 (168)
...+...|+-+-+....+-|++-.+
T Consensus 177 ~~~~~~al~Kq~e~~~~EydrLlee 201 (216)
T KOG1962|consen 177 AQKKVDALKKQSEGLQDEYDRLLEE 201 (216)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHH
Confidence 3334444444444444444444433
No 93
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=86.13 E-value=20 Score=30.36 Aligned_cols=117 Identities=12% Similarity=0.191 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc---CCCHHHH
Q psy14403 36 YEGLLQLKIRDLTNEITRLKRQIELSAKEHATF----LLYDKRVKEMATELTELQGKLSDYNLTMDKVNT---QTNIADI 108 (168)
Q Consensus 36 y~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~----~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t---~~d~~~i 108 (168)
-+..+...+..|..++..|+++.....+..... ...-++++.|...|..+...+-+...-+..++. +.+.+++
T Consensus 46 ~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l 125 (264)
T PF06008_consen 46 QLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDL 125 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHH
Confidence 344455555666666666666555443333222 234568999999999999998888888888887 7788888
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14403 109 EEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMID 154 (168)
Q Consensus 109 ~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~ 154 (168)
.....+.+..-..++.. | +=..|...+.+++..+.=+.+.+...
T Consensus 126 ~~~l~ea~~mL~emr~r-~-f~~~~~~Ae~El~~A~~LL~~v~~~~ 169 (264)
T PF06008_consen 126 QRALAEAQRMLEEMRKR-D-FTPQRQNAEDELKEAEDLLSRVQKWF 169 (264)
T ss_pred HHHHHHHHHHHHHHHhc-c-chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777777777666 3 34455556666666665544444443
No 94
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=86.08 E-value=5.5 Score=29.22 Aligned_cols=51 Identities=14% Similarity=0.253 Sum_probs=42.0
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 92 YNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIE 148 (168)
Q Consensus 92 yNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie 148 (168)
++.|||.+ .-+..+..+||.+|....+.++.+-..|...+.+..++..|-.
T Consensus 13 IqqAvdtI------~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 13 VQQAIDTI------TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45566654 4488999999999999999999999999999998888876654
No 95
>KOG0612|consensus
Probab=85.99 E-value=16 Score=38.36 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHhHhHHH
Q psy14403 45 RDLTNEITRLKRQIELSAKEH-----ATFLLYDKRVKEMATELTELQGKLSD 91 (168)
Q Consensus 45 ~El~~EI~kL~~e~e~~~~e~-----s~~~~yekrae~La~EI~~LQG~LAD 91 (168)
.+|..+|++++.+...+.+.. ..|.-++.++.....+.++|..++-|
T Consensus 468 keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~ 519 (1317)
T KOG0612|consen 468 KELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQ 519 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666665555422 34444555555555555555444443
No 96
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=85.68 E-value=13 Score=27.91 Aligned_cols=85 Identities=25% Similarity=0.404 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCC------------------------------------H-HHH
Q psy14403 66 ATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTN------------------------------------I-ADI 108 (168)
Q Consensus 66 s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d------------------------------------~-~~i 108 (168)
..+..|+...+.|..++..|+..+.+|+.+.+.+.+-.. + -++
T Consensus 6 ~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE~~~ 85 (129)
T cd00584 6 AQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVEKDL 85 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEEecH
Confidence 445566666666666777777777777776666654221 0 123
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 109 EEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKL 150 (168)
Q Consensus 109 ~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~ 150 (168)
.+-..-++.+-+...+.++.+-.....+...+..++..+++.
T Consensus 86 ~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~ 127 (129)
T cd00584 86 EEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQEL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455666777777777777777777777777777776653
No 97
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=85.56 E-value=37 Score=33.03 Aligned_cols=64 Identities=20% Similarity=0.361 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHHHhHhHHHHHHHHHHhhc
Q psy14403 38 GLLQLKIRDLTNEITRLKRQIELSAKEHATFLLY----DKRVKEMATELTELQGKLSDYNLTMDKVNT 101 (168)
Q Consensus 38 glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~y----ekrae~La~EI~~LQG~LADyNl~~Dk~~t 101 (168)
--|+..+..|..|++.|..++....+++..+... +.|..+|-..+..++..+.|-=.++..+.+
T Consensus 83 ~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqs 150 (617)
T PF15070_consen 83 QQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQS 150 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3577788889999999999988888777777544 567778888889999999887777766654
No 98
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=84.91 E-value=17 Score=28.53 Aligned_cols=85 Identities=18% Similarity=0.267 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHH
Q psy14403 44 IRDLTNEITRLKRQIELS-AKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIE 122 (168)
Q Consensus 44 i~El~~EI~kL~~e~e~~-~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~ 122 (168)
...+..+.+.|..|.+.+ +++.+.|..+..+++.+..++.++...-+...-.+.++....+..=-.++|..|-.+.+..
T Consensus 22 ~~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~ 101 (126)
T PF09403_consen 22 TASVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDL 101 (126)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 455666667777776665 4577889999999999999999999999999999999988777777788888888777766
Q ss_pred HHHHHH
Q psy14403 123 TRHLEE 128 (168)
Q Consensus 123 ~~~ld~ 128 (168)
...||.
T Consensus 102 ~~~L~k 107 (126)
T PF09403_consen 102 LNKLDK 107 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 99
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=84.34 E-value=48 Score=33.26 Aligned_cols=72 Identities=21% Similarity=0.288 Sum_probs=41.2
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHh
Q psy14403 28 RQVQDKRYYEGLLQLKIRDLTNEITRLKRQIELS----AKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKV 99 (168)
Q Consensus 28 RQV~DksYy~glLR~Ki~El~~EI~kL~~e~e~~----~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~ 99 (168)
.|-.|-.=.+.+|+.-++....+.+.|+.+++.+ +.-++.+....+....+..|...++|+|.|..-.+|+.
T Consensus 315 ~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~ 390 (775)
T PF10174_consen 315 EQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKK 390 (775)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666666666666666543 33355555555556666666666666665554444443
No 100
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=84.24 E-value=40 Score=32.28 Aligned_cols=62 Identities=18% Similarity=0.257 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHh
Q psy14403 38 GLLQLKIRDLTNEITRLKRQI------ELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKV 99 (168)
Q Consensus 38 glLR~Ki~El~~EI~kL~~e~------e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~ 99 (168)
.-|+.++.++..||..+.+++ +.+..=...+..++++...+..++..+++++.-.+.-+..+
T Consensus 394 ~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 461 (650)
T TIGR03185 394 SQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEAL 461 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666544 34444445555555555555555555555555444444433
No 101
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=84.17 E-value=19 Score=28.48 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=12.8
Q ss_pred hcCCCHHHHHHHHHHHHHhcHHHHHHHHH
Q psy14403 100 NTQTNIADIEEEYLELRAANDIETRHLEE 128 (168)
Q Consensus 100 ~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~ 128 (168)
++-...+++......|+..+......|+.
T Consensus 106 ~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 106 SSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443
No 102
>PF08738 Gon7: Gon7 family; InterPro: IPR014849 In Saccharomyces cerevisiae Gon7 is a member of the KEOPS protein complex. A protein complex proposed to be involved in transcription and promoting telomere uncapping and telomere elongation [].
Probab=84.03 E-value=5.9 Score=30.20 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=34.6
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy14403 27 FRQVQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATF 68 (168)
Q Consensus 27 ~RQV~DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~ 68 (168)
.+-+.+|.=|+|-||..+.-|+.+||++-.+.-...+.+..-
T Consensus 46 d~~s~~K~t~L~~LR~~lt~lQddIN~fLTeRMe~dK~~~~~ 87 (103)
T PF08738_consen 46 DKPSEDKDTYLSELRAQLTTLQDDINEFLTERMEEDKARDAQ 87 (103)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 367899999999999999999999998877766666555443
No 103
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=84.01 E-value=26 Score=29.87 Aligned_cols=118 Identities=19% Similarity=0.278 Sum_probs=55.1
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHH
Q psy14403 28 RQVQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIAD 107 (168)
Q Consensus 28 RQV~DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~ 107 (168)
..|.-.++|-.-|-..+.+|..+-...-..... .....|..+..++...+..-...+...-.=+..++. .+..
T Consensus 155 ~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~-----e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~--~~~~ 227 (312)
T PF00038_consen 155 VTVEVDQFRSSDLSAALREIRAQYEEIAQKNRE-----ELEEWYQSKLEELRQQSEKSSEELESAKEELKELRR--QIQS 227 (312)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
T ss_pred cceeecccccccchhhhhhHHHHHHHHHhhhhh-----hhhhhcccccccccccccccccccchhHhHHHHHHh--hhhH
Confidence 335555577777888888887765543322221 233455555555544444333333333222222222 2345
Q ss_pred HHHHHHHHHHhcHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhh
Q psy14403 108 IEEEYLELRAANDIETRHLEEQ----FTERSKKQHQLHELEAEIEKLDM 152 (168)
Q Consensus 108 i~~e~~~Lk~~N~~~~~~ld~i----F~eR~~~E~~i~~lE~eie~~~~ 152 (168)
+..++..|+.+|+.....|..+ =.++......|..+|.+|.+++.
T Consensus 228 l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~ 276 (312)
T PF00038_consen 228 LQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELRE 276 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHH
Confidence 5556666666666666666443 34455556666667766666543
No 104
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=83.96 E-value=23 Score=29.35 Aligned_cols=56 Identities=20% Similarity=0.309 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q psy14403 39 LLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNL 94 (168)
Q Consensus 39 lLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl 94 (168)
-|..-...+..|...|++++..++++...+.....|...+.+++++|+-+-...-.
T Consensus 59 ~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~q 114 (201)
T PF13851_consen 59 RLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQ 114 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666778888888888999999999999999999999999888765444333
No 105
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=83.72 E-value=6.6 Score=35.99 Aligned_cols=59 Identities=20% Similarity=0.343 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDK 98 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk 98 (168)
|+.++.+|..|.+.+.+++....+.......+-.++.+|..+|++|+.++..+..-++.
T Consensus 40 l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 40 LQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554433333233445556666666666666666555444443
No 106
>PRK09039 hypothetical protein; Validated
Probab=83.47 E-value=33 Score=30.69 Aligned_cols=52 Identities=21% Similarity=0.256 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNL 94 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl 94 (168)
|...++....|+.+|+.+|..+. ..+..-..+...|..+|.+|+.+|.....
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~---e~L~le~~~~~~l~~~l~~l~~~l~~a~~ 95 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELA---DLLSLERQGNQDLQDSVANLRASLSAAEA 95 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 56677777777777777775522 11222233555566666666665554433
No 107
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=82.78 E-value=44 Score=31.65 Aligned_cols=62 Identities=13% Similarity=0.168 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcC
Q psy14403 38 GLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQ 102 (168)
Q Consensus 38 glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~ 102 (168)
--.+.++.+|...|..|-..+ +++-..+...++....+..-+..++.++.....-++.++.+
T Consensus 278 ~~~~~~~~~i~~~Id~Lyd~l---ekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 278 DEAEEKNEEIQERIDQLYDIL---EREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345778888888888887554 45666666667777777777777777777776666666654
No 108
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=82.73 E-value=14 Score=33.49 Aligned_cols=70 Identities=16% Similarity=0.348 Sum_probs=43.3
Q ss_pred ccchhhhHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q psy14403 30 VQDKRYYEGLLQL----------------KIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYN 93 (168)
Q Consensus 30 V~DksYy~glLR~----------------Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyN 93 (168)
+.|.+||..++.. -...+..++++|+++++.+...-+......++.+++...+..++-++++..
T Consensus 214 ~r~~~Yf~~l~~~f~d~a~~~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~ 293 (406)
T PF02388_consen 214 IRSLEYFENLYDAFGDKAKFFLAELNGKEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAE 293 (406)
T ss_dssp ---HHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHhcCCCeEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 5678888887653 455666666666666666665433333666777777777777777777777
Q ss_pred HHHHHh
Q psy14403 94 LTMDKV 99 (168)
Q Consensus 94 l~~Dk~ 99 (168)
.+++.-
T Consensus 294 ~~~~~~ 299 (406)
T PF02388_consen 294 ELIAEY 299 (406)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 665543
No 109
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=82.71 E-value=13 Score=28.89 Aligned_cols=60 Identities=20% Similarity=0.342 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q psy14403 37 EGLLQLKIRDLTNEITRLKRQIELSA-KEHATFLLYDKRVKEMATELTELQGKLSDYNLTM 96 (168)
Q Consensus 37 ~glLR~Ki~El~~EI~kL~~e~e~~~-~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~ 96 (168)
.|-|-++...|+.||.+|.+.+...+ +..++..+.-+|.++|-..|..|++-+...|--+
T Consensus 3 ~a~~~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dV 63 (112)
T PF07439_consen 3 DAGLHQQLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADV 63 (112)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhH
Confidence 46678899999999999999987654 5566788899999999999999998777665433
No 110
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=82.45 E-value=70 Score=33.74 Aligned_cols=86 Identities=9% Similarity=0.049 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 70 LYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEK 149 (168)
Q Consensus 70 ~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~ 149 (168)
..+.+.+.+..++..|++++...-.-++-+.. .+.-....++.+++.+.....+.++..+..-..++....+++.++.+
T Consensus 294 ~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~-~~a~~~~~eL~el~~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~~ 372 (1353)
T TIGR02680 294 TAREEERELDARTEALEREADALRTRLEALQG-SPAYQDAEELERARADAEALQAAAADARQAIREAESRLEEERRRLDE 372 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444443333344433 33333345555666677677777777776666666666666666655
Q ss_pred Hhhhhhh
Q psy14403 150 LDMIDIS 156 (168)
Q Consensus 150 ~~~~~~~ 156 (168)
...-...
T Consensus 373 ~~~r~~~ 379 (1353)
T TIGR02680 373 EAGRLDD 379 (1353)
T ss_pred HHHHHHH
Confidence 4444333
No 111
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=82.33 E-value=7.1 Score=32.31 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Q psy14403 43 KIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQG 87 (168)
Q Consensus 43 Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG 87 (168)
=.+|+..||.+|.++++.++.-.+....+..++.-|..|+..++.
T Consensus 121 ~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 121 TKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888888887777777777777777777666554
No 112
>KOG0018|consensus
Probab=82.31 E-value=25 Score=36.56 Aligned_cols=67 Identities=18% Similarity=0.326 Sum_probs=40.1
Q ss_pred HHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14403 81 ELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDM 152 (168)
Q Consensus 81 EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~ 152 (168)
++.-+.+++.+|+-+-+....-. ..++.-|.-.-.-....+|..+.-+.+.|+.++.++..+++.+.
T Consensus 357 ~lnl~d~~~~ey~rlk~ea~~~~-----~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~ 423 (1141)
T KOG0018|consen 357 ELNLKDDQVEEYERLKEEACKEA-----LEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDK 423 (1141)
T ss_pred cCCcchHHHHHHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555556665555544322 22222222222335677888888889999988888888866554
No 113
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=81.83 E-value=39 Score=30.37 Aligned_cols=108 Identities=20% Similarity=0.272 Sum_probs=83.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHH
Q psy14403 31 QDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEE 110 (168)
Q Consensus 31 ~DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~ 110 (168)
.-+...+-.|+.|+..|-.|=..|..|...+..+.. .||.....|-. +-=.+|++ .|.-+..+..
T Consensus 156 ~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~---~~EekEqqLv~---dcv~QL~~---------An~qia~Lse 220 (306)
T PF04849_consen 156 SQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETD---TYEEKEQQLVL---DCVKQLSE---------ANQQIASLSE 220 (306)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh---hccHHHHHHHH---HHHHHhhh---------cchhHHHHHH
Confidence 345667889999999999999999999888887776 56666555533 23334443 3456777788
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14403 111 EYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMI 153 (168)
Q Consensus 111 e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~ 153 (168)
++..-...|.+.+++|..+-.+..+.+..++++=.|-+++...
T Consensus 221 ELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~ 263 (306)
T PF04849_consen 221 ELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQH 263 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 8888888899999999999999999999988888777776654
No 114
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=81.69 E-value=9.8 Score=34.43 Aligned_cols=62 Identities=19% Similarity=0.391 Sum_probs=52.2
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q psy14403 32 DKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYN 93 (168)
Q Consensus 32 DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyN 93 (168)
|-.=|+.-|..++..+..+|.+|.+.++...+.......+++....+.++|.+++.-++.+.
T Consensus 239 ~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~~ 300 (406)
T PF02388_consen 239 NGKEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIAEYG 300 (406)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33447889999999999999999999888888888888999999999999999888777653
No 115
>KOG4674|consensus
Probab=81.41 E-value=42 Score=36.73 Aligned_cols=88 Identities=16% Similarity=0.288 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHH--------HHHHHHHHHHHHHHHHHhHhHHHHHHHHHH---------------
Q psy14403 42 LKIRDLTNEITRLKRQIELSAKEHATF--------LLYDKRVKEMATELTELQGKLSDYNLTMDK--------------- 98 (168)
Q Consensus 42 ~Ki~El~~EI~kL~~e~e~~~~e~s~~--------~~yekrae~La~EI~~LQG~LADyNl~~Dk--------------- 98 (168)
.+.+|+...|+.+++=++........+ .+..+..+.+-++|..|+|.|.|.|..+..
T Consensus 298 ~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~~~~~~~~s~~~a~~s 377 (1822)
T KOG4674|consen 298 HEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSATGESSMVSEKAALAS 377 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcccchhhhHHHHHH
Confidence 344455555555544444444443333 556777888889999999999999987666
Q ss_pred --hhcCCCHHHHHHHHHHHHHhcHHHHHHHHHH
Q psy14403 99 --VNTQTNIADIEEEYLELRAANDIETRHLEEQ 129 (168)
Q Consensus 99 --~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~i 129 (168)
.+.+....++...|..+..++....-++|++
T Consensus 378 ~~~~~~~sLtk~ys~~~~~qqqle~~~lele~~ 410 (1822)
T KOG4674|consen 378 SLIRPGSSLTKLYSKYSKLQQQLESLKLELERL 410 (1822)
T ss_pred hhcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333344455555555555555444444443
No 116
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=81.37 E-value=32 Score=31.93 Aligned_cols=50 Identities=14% Similarity=0.071 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14403 102 QTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLD 151 (168)
Q Consensus 102 ~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~ 151 (168)
..+++++.+-..-+..+.......+-.+=.+.++.++++..++.++..+-
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 123 EPDLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34666666666555555555555544444455555555555555554443
No 117
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=81.25 E-value=17 Score=25.84 Aligned_cols=84 Identities=17% Similarity=0.312 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHH--------------HHHHHHHHHHHhcHHHHHHHHHHHH
Q psy14403 66 ATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIA--------------DIEEEYLELRAANDIETRHLEEQFT 131 (168)
Q Consensus 66 s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~--------------~i~~e~~~Lk~~N~~~~~~ld~iF~ 131 (168)
..|..+..+...+...+..|..++..+..+.+-+.. .+++ +...-...|+..-+.....++.+=.
T Consensus 5 ~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~-l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~ 83 (106)
T PF01920_consen 5 NKFQELNQQLQQLEQQIQQLERQLRELELTLEELEK-LDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEK 83 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666777777888888888888888888888876 3333 5666677888888888999999988
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14403 132 ERSKKQHQLHELEAEIEKL 150 (168)
Q Consensus 132 eR~~~E~~i~~lE~eie~~ 150 (168)
.....+..+.+++..+...
T Consensus 84 ~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 84 QLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888888877643
No 118
>KOG0964|consensus
Probab=81.21 E-value=74 Score=33.23 Aligned_cols=108 Identities=18% Similarity=0.280 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh--------------HHHHHHHHHHhhcC
Q psy14403 37 EGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGK--------------LSDYNLTMDKVNTQ 102 (168)
Q Consensus 37 ~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~--------------LADyNl~~Dk~~t~ 102 (168)
+..+|.-|+++.++|..+..++...+ .....+...++.|..|+..+.|+ |.+.++-++++.++
T Consensus 687 L~~~r~~i~~~~~~i~q~~~~~qk~e---~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~ 763 (1200)
T KOG0964|consen 687 LDEVRNEIEDIDQKIDQLNNNMQKVE---NDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQ 763 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555444 34455566666666666665554 56666666666443
Q ss_pred CC---------------HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 103 TN---------------IADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIE 148 (168)
Q Consensus 103 ~d---------------~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie 148 (168)
.. |++ ...+..|...-......++.+-.+|...+.....+|..+.
T Consensus 764 ~~~~e~el~sel~sqLt~ee-~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~ 823 (1200)
T KOG0964|consen 764 SNYFESELGSELFSQLTPEE-LERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLN 823 (1200)
T ss_pred HHhHHHHHhHHHHhhcCHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 222 2344555555566777777888888888887777777654
No 119
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=80.48 E-value=5 Score=32.08 Aligned_cols=62 Identities=26% Similarity=0.387 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHh
Q psy14403 38 GLLQLKIRDLTNEITRLKRQIELSAK--EHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKV 99 (168)
Q Consensus 38 glLR~Ki~El~~EI~kL~~e~e~~~~--e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~ 99 (168)
+-.-.+..++..||..+++|.....- +=+-|...++++..+..|+++++..+.......++.
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~ 99 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKS 99 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888888888888776432 335677778899999999999998888776666654
No 120
>PF13514 AAA_27: AAA domain
Probab=80.15 E-value=74 Score=32.53 Aligned_cols=42 Identities=29% Similarity=0.341 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 103 TNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELE 144 (168)
Q Consensus 103 ~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE 144 (168)
.+++.+..++..++...+.....++.+..++...+.++..++
T Consensus 889 ~d~~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~ 930 (1111)
T PF13514_consen 889 LDPDELEAELEELEEELEELEEELEELQEERAELEQELEALE 930 (1111)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466667777777777777777777777777777777666554
No 121
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=80.15 E-value=25 Score=27.02 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy14403 130 FTERSKKQHQLHELEAEIEKLD 151 (168)
Q Consensus 130 F~eR~~~E~~i~~lE~eie~~~ 151 (168)
-.++...+.++..++..+..+.
T Consensus 97 ~~qk~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 97 EEQKEQLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666665543
No 122
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=80.14 E-value=27 Score=27.56 Aligned_cols=54 Identities=20% Similarity=0.318 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHH
Q psy14403 37 EGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSD 91 (168)
Q Consensus 37 ~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LAD 91 (168)
+.-|+..+.++..++..|..++..+...-++- .+......|..|+..|+.+|..
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~-el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNE-ELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555544443321 2344444444444444444443
No 123
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=79.86 E-value=17 Score=25.15 Aligned_cols=46 Identities=24% Similarity=0.351 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14403 106 ADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLD 151 (168)
Q Consensus 106 ~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~ 151 (168)
..|..+++.++..|-.....|.+.=...++.+.+|..++.+|++.+
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4578889999999999999999999999999999999999998864
No 124
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=79.67 E-value=77 Score=32.87 Aligned_cols=29 Identities=10% Similarity=0.253 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHH---HhHhHHHHHHH
Q psy14403 67 TFLLYDKRVKEMATELTE---LQGKLSDYNLT 95 (168)
Q Consensus 67 ~~~~yekrae~La~EI~~---LQG~LADyNl~ 95 (168)
....|+++.+.|.++|+. -+..+.+|..-
T Consensus 772 ~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~ 803 (1201)
T PF12128_consen 772 RIQQLKQEIEQLEKELKRIEERRAEVIEYEDW 803 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344444444444443332 23344444443
No 125
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=79.65 E-value=44 Score=29.69 Aligned_cols=28 Identities=14% Similarity=0.148 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHhHHHH
Q psy14403 65 HATFLLYDKRVKEMATELTELQGKLSDY 92 (168)
Q Consensus 65 ~s~~~~yekrae~La~EI~~LQG~LADy 92 (168)
+..+..+..++..|-.|+..|+..=.+.
T Consensus 171 ~~~~~~l~~~~~~L~~e~~~L~~~~~e~ 198 (312)
T smart00787 171 NSIKPKLRDRKDALEEELRQLKQLEDEL 198 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3566677777777777777776655443
No 126
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=79.59 E-value=41 Score=29.71 Aligned_cols=39 Identities=23% Similarity=0.403 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHH
Q psy14403 72 DKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEE 110 (168)
Q Consensus 72 ekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~ 110 (168)
..|.+.|..|++.|+++|-.++--+++.+...+...+..
T Consensus 167 d~rnq~l~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 205 (264)
T PF07246_consen 167 DRRNQILSHEISNLTNELSNLRNDIDKFQEREDEKILHE 205 (264)
T ss_pred hhHHHHHHHHHHHhhhhHHHhhchhhhhhhhhhHHHHHH
Confidence 677788888999999999888777778877655544333
No 127
>KOG3564|consensus
Probab=79.33 E-value=18 Score=34.80 Aligned_cols=71 Identities=15% Similarity=0.268 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 65 HATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELE 144 (168)
Q Consensus 65 ~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE 144 (168)
.--|..|+++-+-++.|..+.+ -+++|..+. ...|..+-.+.+++||....+|++.|..+..+|
T Consensus 34 ~k~fed~~ek~~r~~ae~~~~~-------~~L~Ka~tk---------~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E 97 (604)
T KOG3564|consen 34 RKDFEDFEEKWKRTDAELGKYK-------DLLAKAETK---------RSALDVKLKHARNQVDAEIKRRRRAEADCEKLE 97 (604)
T ss_pred HHHHHHHHHHHhhhhHHHHHHH-------HHHHHHHHh---------hhhccchHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3345566666666666655544 455666653 334444556778999999999999999999999
Q ss_pred HHHHHHh
Q psy14403 145 AEIEKLD 151 (168)
Q Consensus 145 ~eie~~~ 151 (168)
.+|..+.
T Consensus 98 ~~i~~i~ 104 (604)
T KOG3564|consen 98 TQIQLIK 104 (604)
T ss_pred HHHHHHH
Confidence 9887654
No 128
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=79.32 E-value=64 Score=31.31 Aligned_cols=56 Identities=21% Similarity=0.283 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q psy14403 37 EGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLT 95 (168)
Q Consensus 37 ~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~ 95 (168)
+--|+..+.+|..+|..+..+++... +.+.......+....+..+|+.+++=.-.+
T Consensus 330 l~~l~~~l~~l~~~i~~~~~~~~~l~---~~~~q~~~e~~~~~~~~~~le~~~~l~~k~ 385 (594)
T PF05667_consen 330 LEELQEQLDELESQIEELEAEIKMLK---SSLKQLEEELEEKEAENEELEEELKLKKKT 385 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666555 334455566666666666666655433333
No 129
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=79.29 E-value=6.8 Score=37.06 Aligned_cols=60 Identities=13% Similarity=0.195 Sum_probs=37.7
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHhHhH
Q psy14403 30 VQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEH----ATFLLYDKRVKEMATELTELQGKL 89 (168)
Q Consensus 30 V~DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~----s~~~~yekrae~La~EI~~LQG~L 89 (168)
|-|..+=.-.=+++..+-..-.+.|+++++.+.++. .....++.+.++|..|++.|+.++
T Consensus 57 vV~~~FddkVnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 57 VVDTTFDDKVRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred eecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344444333445555555555555555555554443 344567899999999999999988
No 130
>KOG0977|consensus
Probab=79.22 E-value=49 Score=31.96 Aligned_cols=78 Identities=15% Similarity=0.284 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHh-------hcC-----CCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 74 RVKEMATELTELQGKLSDYNLTMDKV-------NTQ-----TNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLH 141 (168)
Q Consensus 74 rae~La~EI~~LQG~LADyNl~~Dk~-------~t~-----~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~ 141 (168)
....+..+|+.|+.++.+|=.-+++. +.+ ..+.+++++++-++.........+..|-.+--.....|.
T Consensus 107 ~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~ 186 (546)
T KOG0977|consen 107 ERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELA 186 (546)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 44455667777777777776666655 111 226667777777777777777777777777777777777
Q ss_pred HHHHHHHHHh
Q psy14403 142 ELEAEIEKLD 151 (168)
Q Consensus 142 ~lE~eie~~~ 151 (168)
.+-.++.++-
T Consensus 187 ~~r~~ld~Et 196 (546)
T KOG0977|consen 187 RARKQLDDET 196 (546)
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 131
>KOG4673|consensus
Probab=78.22 E-value=49 Score=33.41 Aligned_cols=93 Identities=17% Similarity=0.363 Sum_probs=0.0
Q ss_pred hHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHH----HHHHHHHhhcCCC-HHH
Q psy14403 36 YEGLLQLK---IRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSD----YNLTMDKVNTQTN-IAD 107 (168)
Q Consensus 36 y~glLR~K---i~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LAD----yNl~~Dk~~t~~d-~~~ 107 (168)
|.+|||++ ++-++.||.+|.+....+..+=..++.-=...++-+++|-.+..+|-| ||.++.-...... .++
T Consensus 857 ~eall~QreGElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a~LqmyGEk~Ee~EE 936 (961)
T KOG4673|consen 857 YEALLRQREGELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAAALQMYGEKDEELEE 936 (961)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHH
Q psy14403 108 IEEEYLELRAANDIETRHLEEQFT 131 (168)
Q Consensus 108 i~~e~~~Lk~~N~~~~~~ld~iF~ 131 (168)
++.++.+||+. -..+||++..
T Consensus 937 LrlDl~dlK~m---Yk~QIdeLl~ 957 (961)
T KOG4673|consen 937 LRLDLVDLKEM---YKEQIDELLN 957 (961)
T ss_pred HHhhHHHHHHH---HHHHHHHHHh
No 132
>KOG3433|consensus
Probab=78.17 E-value=42 Score=28.52 Aligned_cols=101 Identities=15% Similarity=0.178 Sum_probs=71.0
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHH
Q psy14403 28 RQVQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIAD 107 (168)
Q Consensus 28 RQV~DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~ 107 (168)
--+.|+.-+.+.|.+-.....+-+..|.+.++....++ .-=|+|.++|++++..|+..|.+.-.=+.|++. +||..
T Consensus 74 ~a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~---e~tEer~~el~kklnslkk~~e~lr~el~k~~e-~dpqv 149 (203)
T KOG3433|consen 74 EAICDRKSVLQELESQLATGSQKKATLGESIENRKAGR---EETEERTDELTKKLNSLKKILESLRWELAKIQE-TDPQV 149 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCHHH
Confidence 34677888888888888888887777777665554433 344677778888888888877777777777777 78877
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHH
Q psy14403 108 IEEEYLELRAANDIETRHLEEQFTE 132 (168)
Q Consensus 108 i~~e~~~Lk~~N~~~~~~ld~iF~e 132 (168)
...-...-|...+..-.-.|+||.-
T Consensus 150 ~~k~~~~~K~~~eaanrwtDnI~il 174 (203)
T KOG3433|consen 150 FEKKVHLEKTMAEAANRWTDNIFIL 174 (203)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 6655555555555555567888863
No 133
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=78.09 E-value=49 Score=29.27 Aligned_cols=110 Identities=22% Similarity=0.293 Sum_probs=49.9
Q ss_pred ccchhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCC
Q psy14403 30 VQDKRYYEGLLQLKI--RDLTNEITRLKRQIELSAKEH----ATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQT 103 (168)
Q Consensus 30 V~DksYy~glLR~Ki--~El~~EI~kL~~e~e~~~~e~----s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~ 103 (168)
..++..|...|+.-. .....++..+.++++.++++. ..+..+|+..+.+.+|+.+|+.++++.+.
T Consensus 22 ~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~--------- 92 (314)
T PF04111_consen 22 EKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDE--------- 92 (314)
T ss_dssp --------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 455666666664332 223333444444444333332 23556677777777777777776665542
Q ss_pred CHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy14403 104 NIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMIDI 155 (168)
Q Consensus 104 d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~~ 155 (168)
.+..-.+..|. ..-++-+.-.++...+.++.....+++++++..+
T Consensus 93 ------eE~~~~~~~n~-~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv 137 (314)
T PF04111_consen 93 ------EEEEYWREYNE-LQLELIEFQEERDSLKNQYEYASNQLDRLRKTNV 137 (314)
T ss_dssp ------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--T
T ss_pred ------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 11122233333 2333445556777788888888888888877653
No 134
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=78.09 E-value=13 Score=29.13 Aligned_cols=50 Identities=22% Similarity=0.348 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q psy14403 42 LKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYN 93 (168)
Q Consensus 42 ~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyN 93 (168)
.||.++..|+.++..++... =...-..|+..++.|..+|..|++.|..|=
T Consensus 10 ~ki~~l~~~~~~i~~~~~~~--I~~i~~~~~~~~~~l~~~i~~l~~~l~~y~ 59 (149)
T PF07352_consen 10 RKIAELQREIARIEAEANDE--IARIKEWYEAEIAPLQNRIEYLEGLLQAYA 59 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667777777766655322 233456788899999999999999999984
No 135
>PLN02939 transferase, transferring glycosyl groups
Probab=78.05 E-value=88 Score=32.34 Aligned_cols=72 Identities=18% Similarity=0.156 Sum_probs=61.9
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc
Q psy14403 30 VQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNT 101 (168)
Q Consensus 30 V~DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t 101 (168)
|---+-=++.||..+.-|..-|.-|+.++.....-..-...++|...-|..-+++|+.+++.-+.=+-|+.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (977)
T PLN02939 221 VHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSP 292 (977)
T ss_pred cccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc
Confidence 555567788999999999999999999999888877888889999999999999999999887776666654
No 136
>PLN02678 seryl-tRNA synthetase
Probab=77.48 E-value=14 Score=34.47 Aligned_cols=54 Identities=17% Similarity=0.258 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYN 93 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyN 93 (168)
|..++.++..|.+.+.+++-...+.......+-.++..|..+|+.|+.++..+.
T Consensus 45 l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~ 98 (448)
T PLN02678 45 RQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAK 98 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544333333333444455555555555555554443
No 137
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=77.35 E-value=21 Score=26.30 Aligned_cols=89 Identities=19% Similarity=0.305 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCC-----------------------CHHHHH-----HHH--HH
Q psy14403 65 HATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQT-----------------------NIADIE-----EEY--LE 114 (168)
Q Consensus 65 ~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~-----------------------d~~~i~-----~e~--~~ 114 (168)
...|..|+.+...+...+..|+..+.+|..+.+.+..=. +...|- .-+ ..
T Consensus 5 ~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ve~~ 84 (129)
T cd00890 5 AAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVEKS 84 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEEEec
Confidence 457788999999999999999999999998888876521 111110 111 23
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14403 115 LRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMI 153 (168)
Q Consensus 115 Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~ 153 (168)
+...-+...+.++.+=......+..+..+..++......
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~ 123 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEE 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777777777888888888888888877654
No 138
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=77.11 E-value=66 Score=30.30 Aligned_cols=44 Identities=18% Similarity=0.219 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q psy14403 51 ITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNL 94 (168)
Q Consensus 51 I~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl 94 (168)
...-.++++.+..+-+....++........+|..||++|..|.-
T Consensus 220 leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~ 263 (522)
T PF05701_consen 220 LEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKE 263 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444455555666666666777777777776665
No 139
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=77.09 E-value=15 Score=33.64 Aligned_cols=58 Identities=26% Similarity=0.340 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKEHAT-FLLYDKRVKEMATELTELQGKLSDYNLTMD 97 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e~s~-~~~yekrae~La~EI~~LQG~LADyNl~~D 97 (168)
|..++.+|..|.+++.+++....+.... ...+-.++++|..+|++|+.++..+..-+.
T Consensus 42 ~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 100 (418)
T TIGR00414 42 LLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQ 100 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555443222222 445666777777788888777766544433
No 140
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=76.81 E-value=75 Score=30.75 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHH------------HHHHHHHHHHHHHHHhHhHHH----HHHHHHHhh
Q psy14403 47 LTNEITRLKRQIELSAKEHATFLL------------YDKRVKEMATELTELQGKLSD----YNLTMDKVN 100 (168)
Q Consensus 47 l~~EI~kL~~e~e~~~~e~s~~~~------------yekrae~La~EI~~LQG~LAD----yNl~~Dk~~ 100 (168)
|...+..++++++..++.-..|.. .+.+..++..++...+.++++ |+.+-..+.
T Consensus 199 L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~ 268 (754)
T TIGR01005 199 LAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKALQ 268 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555444432 345666666666666666666 555444443
No 141
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=76.24 E-value=62 Score=29.50 Aligned_cols=72 Identities=15% Similarity=0.221 Sum_probs=44.3
Q ss_pred cchhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------------------------------hHHHH
Q psy14403 31 QDKRYYE---GLLQLKIRDLTNEITRLKRQIELSAKEH-------------------------------------ATFLL 70 (168)
Q Consensus 31 ~DksYy~---glLR~Ki~El~~EI~kL~~e~e~~~~e~-------------------------------------s~~~~ 70 (168)
.|.+-+. ..|+.+...+..++.+|..+........ +....
T Consensus 90 ld~~~~~~~~~~~~~~~~~~~~~~~rL~a~~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~ 169 (457)
T TIGR01000 90 YDNGNEENQKQLLEQQLDNLKDQKKSLDTLKQSIENGRNQFPTDDSFGYRNLFNGYLAQVESLTSETQQQNDKSQTQNEA 169 (457)
T ss_pred ECchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 4555554 3466677778888888877765432110 01113
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcC
Q psy14403 71 YDKRVKEMATELTELQGKLSDYNLTMDKVNTQ 102 (168)
Q Consensus 71 yekrae~La~EI~~LQG~LADyNl~~Dk~~t~ 102 (168)
+......+...+..++.++..|....+.+..+
T Consensus 170 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 201 (457)
T TIGR01000 170 AEKTKAQLDQQISKTDQKLQDYQALKNAISNG 201 (457)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44445556677778888888888888855554
No 142
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=76.14 E-value=18 Score=25.97 Aligned_cols=61 Identities=13% Similarity=0.163 Sum_probs=43.5
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHhcHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14403 93 NLTMDKVN-TQTNIADIEEEYLELRAANDIETRHLEE---QFTERSKKQHQLHELEAEIEKLDMI 153 (168)
Q Consensus 93 Nl~~Dk~~-t~~d~~~i~~e~~~Lk~~N~~~~~~ld~---iF~eR~~~E~~i~~lE~eie~~~~~ 153 (168)
+.+-+--+ .+.++.++...+..|+.+-.+.+..|.. |=.--.+.+.+|+.+|++++....+
T Consensus 10 ~~l~~~~~d~~~~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~ 74 (83)
T PF07544_consen 10 DILHQISKDPPLSSKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREV 74 (83)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334 5788888999999988888888887776 5555566677888888888765543
No 143
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=75.00 E-value=94 Score=31.03 Aligned_cols=121 Identities=21% Similarity=0.324 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh----HhHHHH------HHHHHHh-----hcCCCH
Q psy14403 41 QLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQ----GKLSDY------NLTMDKV-----NTQTNI 105 (168)
Q Consensus 41 R~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQ----G~LADy------Nl~~Dk~-----~t~~d~ 105 (168)
|..+...++|..+|......+.++. -.+|.....|..||+++. .-|+|| |..+-|. .+.+..
T Consensus 47 ~~~~~~~~~e~~rl~~~~~~~~~~~---~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvef 123 (717)
T PF09730_consen 47 RQELSNVQAENERLSQLNQELRKEC---EDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEF 123 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3333344444444444444444433 344555566667777664 346777 4555554 446889
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhh--hhhhhhhhhhc
Q psy14403 106 ADIEEEYLELRAANDIETRHLEEQFTERSKKQ----HQLHELEAEIEKLDMI--DISMWIDISTI 164 (168)
Q Consensus 106 ~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E----~~i~~lE~eie~~~~~--~~~~~~~~~~~ 164 (168)
+.+..++..|.+-++-...+++++-.-|.-.| +.+..|..|=++=..+ .-+-|+.+..+
T Consensus 124 E~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~~~~~~~~ 188 (717)
T PF09730_consen 124 EGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELDQHLNIESI 188 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 99999999999999999999999988876544 4445554444333322 23445554443
No 144
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=74.93 E-value=26 Score=32.57 Aligned_cols=42 Identities=24% Similarity=0.361 Sum_probs=31.6
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14403 111 EYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDM 152 (168)
Q Consensus 111 e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~ 152 (168)
...++.+..+-..+++-++..++.+.+..++++++++..+++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 166 (525)
T TIGR02231 125 DLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQN 166 (525)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777777778888888888888888888777654
No 145
>KOG4360|consensus
Probab=74.73 E-value=67 Score=31.20 Aligned_cols=38 Identities=26% Similarity=0.225 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy14403 35 YYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYD 72 (168)
Q Consensus 35 Yy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~ye 72 (168)
+.+-.|+.|...+..|+.+|..+...+..+...|...|
T Consensus 159 ~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~ke 196 (596)
T KOG4360|consen 159 ELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKE 196 (596)
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHH
Confidence 44667899999999999999999998877666555443
No 146
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=74.56 E-value=41 Score=30.75 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELS 61 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~ 61 (168)
|+.++.+|..++..++.+++.+
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l 353 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKL 353 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333
No 147
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=74.50 E-value=73 Score=31.03 Aligned_cols=26 Identities=8% Similarity=0.334 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHh
Q psy14403 74 RVKEMATELTELQGKLSDYNLTMDKV 99 (168)
Q Consensus 74 rae~La~EI~~LQG~LADyNl~~Dk~ 99 (168)
.+..+..++.+|+.+|++.+.....+
T Consensus 305 ea~~~l~~~~~l~~ql~~l~~~~~~l 330 (726)
T PRK09841 305 EAKAVLEQIVNVDNQLNELTFREAEI 330 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777766555444
No 148
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=74.11 E-value=32 Score=31.48 Aligned_cols=62 Identities=21% Similarity=0.400 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHh
Q psy14403 38 GLLQLKIRDLTNEITRLKRQIELSAK----------EHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKV 99 (168)
Q Consensus 38 glLR~Ki~El~~EI~kL~~e~e~~~~----------e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~ 99 (168)
-.|+..++++..++.++++.+..+.+ ....+..+.+....|..++++|+.+|....-.+...
T Consensus 337 ~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 337 EELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56788899999999999999888877 346778888888888888888888888776666655
No 149
>PRK09343 prefoldin subunit beta; Provisional
Probab=73.99 E-value=37 Score=25.91 Aligned_cols=88 Identities=15% Similarity=0.236 Sum_probs=54.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc---CCC----------HHHHHHHHHHHHHhcHHHHHHHHHHH
Q psy14403 64 EHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNT---QTN----------IADIEEEYLELRAANDIETRHLEEQF 130 (168)
Q Consensus 64 e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t---~~d----------~~~i~~e~~~Lk~~N~~~~~~ld~iF 130 (168)
.-..|..+++....+......|++++....++.+-+.. ++. ..+..+-...|+.+-+.....+..+=
T Consensus 12 ~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik~le 91 (121)
T PRK09343 12 QLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRSRTLE 91 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777777777777777777766644 111 12233333455555555566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy14403 131 TERSKKQHQLHELEAEIEKLD 151 (168)
Q Consensus 131 ~eR~~~E~~i~~lE~eie~~~ 151 (168)
.....++..+.+++.+++++-
T Consensus 92 kq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 92 KQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666667777777666553
No 150
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=73.83 E-value=25 Score=34.54 Aligned_cols=91 Identities=16% Similarity=0.277 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHH
Q psy14403 45 RDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETR 124 (168)
Q Consensus 45 ~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~ 124 (168)
.-...+|.++.+.++.++.+++.+ +...+++..||..|..+|+-.--=++ ...-+..++..+...+.+.+.
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L---~~~~ee~k~eie~L~~~l~~~~r~~~------~~~~~~rei~~~~~~I~~L~~ 488 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSEL---KRELEELKREIEKLESELERFRREVR------DKVRKDREIRARDRRIERLEK 488 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhhHHHHHHHHHHHHHHH
Confidence 334455666666666666666543 33455555677777777765433222 112233445555556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14403 125 HLEEQFTERSKKQHQLHELE 144 (168)
Q Consensus 125 ~ld~iF~eR~~~E~~i~~lE 144 (168)
.|.+--+...+++..+..++
T Consensus 489 ~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 489 ELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665543
No 151
>KOG0999|consensus
Probab=73.70 E-value=98 Score=30.63 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhH
Q psy14403 43 KIRDLTNEITRLKRQIELSAKEHAT 67 (168)
Q Consensus 43 Ki~El~~EI~kL~~e~e~~~~e~s~ 67 (168)
-...+.+||.+|.++.+.-..+..+
T Consensus 9 ~ve~lr~eierLT~el~q~t~e~~q 33 (772)
T KOG0999|consen 9 EVEKLRQEIERLTEELEQTTEEKIQ 33 (772)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888776665543
No 152
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=73.65 E-value=35 Score=25.45 Aligned_cols=34 Identities=9% Similarity=0.396 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHh
Q psy14403 66 ATFLLYDKRVKEMATELTELQGKLSDYNLTMDKV 99 (168)
Q Consensus 66 s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~ 99 (168)
..|..|+...+.|...+..|...+.+|..+.+-+
T Consensus 6 ~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L 39 (126)
T TIGR00293 6 AELQILQQQVESLQAQIAALRALIAELETAIETL 39 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666665555
No 153
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=73.52 E-value=32 Score=28.29 Aligned_cols=71 Identities=18% Similarity=0.284 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14403 76 KEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDM 152 (168)
Q Consensus 76 e~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~ 152 (168)
+.+..++.+|+.+|.+. ...+-.+ .....+-+++..|+.++....+++...-. .==+.+.++..++...+.
T Consensus 79 ~~~~~~i~~l~~~i~~~--~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~---~Dp~~i~~~~~~~~~~~~ 149 (188)
T PF03962_consen 79 EELEKKIEELEEKIEEA--KKGREES-EEREELLEELEELKKELKELKKELEKYSE---NDPEKIEKLKEEIKIAKE 149 (188)
T ss_pred HHHHHHHHHHHHHHHHH--Hhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHH
Confidence 33344455555555544 1122222 34566777778888888888888882211 112355555555554443
No 154
>KOG0804|consensus
Probab=73.50 E-value=87 Score=29.92 Aligned_cols=41 Identities=20% Similarity=0.176 Sum_probs=27.5
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14403 113 LELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMI 153 (168)
Q Consensus 113 ~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~ 153 (168)
..|+..+++..+.+...=..-.+++++++.|=--|+-++.+
T Consensus 417 ~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~qqkl 457 (493)
T KOG0804|consen 417 GKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLEAQQKL 457 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhhhhh
Confidence 34555556666666666666778888888887777666665
No 155
>smart00338 BRLZ basic region leucin zipper.
Probab=73.41 E-value=18 Score=24.30 Aligned_cols=36 Identities=28% Similarity=0.282 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy14403 34 RYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFL 69 (168)
Q Consensus 34 sYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~ 69 (168)
.-|+.-|..++..|..|...|..++..+..+...+.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666677777766666666666665555443
No 156
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=73.38 E-value=73 Score=29.00 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHH
Q psy14403 107 DIEEEYLELRAANDIETRHLEEQ 129 (168)
Q Consensus 107 ~i~~e~~~Lk~~N~~~~~~ld~i 129 (168)
+.+.++..|.-..+-.++..+.+
T Consensus 352 ~~~~el~~L~Re~~~~~~~Y~~l 374 (498)
T TIGR03007 352 EVEAELTQLNRDYEVNKSNYEQL 374 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555544444444444433
No 157
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=72.55 E-value=45 Score=26.20 Aligned_cols=82 Identities=24% Similarity=0.317 Sum_probs=60.3
Q ss_pred CCCCcccccchhhhHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy14403 23 RGPGFRQVQDKRYYEGL---------------------LQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATE 81 (168)
Q Consensus 23 ~Gp~~RQV~DksYy~gl---------------------LR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~E 81 (168)
+-|.+=+-.|..+|+.| |=++|.++-.++.++..++....+.-+.|...=.+++++...
T Consensus 16 rd~~~leklds~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~ 95 (131)
T PF10158_consen 16 RDPEVLEKLDSRPVLRLCSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQ 95 (131)
T ss_pred CChHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444456777777763 566788888888888888888888888888777777777777
Q ss_pred HHHHhHhHHHHHHHHHHhhcCCC
Q psy14403 82 LTELQGKLSDYNLTMDKVNTQTN 104 (168)
Q Consensus 82 I~~LQG~LADyNl~~Dk~~t~~d 104 (168)
|...|--|.|.=-.++++|.=..
T Consensus 96 L~~~~~lL~~~v~~ie~LN~~LP 118 (131)
T PF10158_consen 96 LSRCQSLLNQTVPSIETLNEILP 118 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCC
Confidence 77777777777777777776433
No 158
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=72.50 E-value=50 Score=29.83 Aligned_cols=103 Identities=16% Similarity=0.233 Sum_probs=60.9
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh--HHHHHHHHHHhhcCCC--H
Q psy14403 30 VQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGK--LSDYNLTMDKVNTQTN--I 105 (168)
Q Consensus 30 V~DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~--LADyNl~~Dk~~t~~d--~ 105 (168)
|.|-.||.+.|...+.++..||..|.......++.- ..+.+- ++.=++.+-.-+.+.| .
T Consensus 52 i~di~~wk~eL~~~l~~~~~Ei~~L~~~K~~le~aL-----------------~~~~~pl~i~~ecL~~R~~R~~~dlv~ 114 (384)
T PF03148_consen 52 IRDIRFWKNELERELEELDEEIDLLEEEKRRLEKAL-----------------EALRKPLSIAQECLSLREKRPGIDLVH 114 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHhcCcHHHHHHHHHHHhCCCCcccCC
Confidence 678889999999999999999988887766554432 222222 2233344333344433 2
Q ss_pred H----HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 106 A----DIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEK 149 (168)
Q Consensus 106 ~----~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~ 149 (168)
+ +|..|..-+..--....+.++.+|.+=+.....-..||..+..
T Consensus 115 D~ve~eL~kE~~li~~~~~lL~~~l~~~~eQl~~lr~ar~~Le~Dl~d 162 (384)
T PF03148_consen 115 DEVEKELLKEVELIENIKRLLQRTLEQAEEQLRLLRAARYRLEKDLSD 162 (384)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3344444444445556666677776666666666666666553
No 159
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=72.28 E-value=13 Score=38.05 Aligned_cols=50 Identities=26% Similarity=0.362 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc
Q psy14403 52 TRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNT 101 (168)
Q Consensus 52 ~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t 101 (168)
.||.++...-+..+.....-+-|++.-..||..|..+||||.-++|-..|
T Consensus 362 ~RLEEQ~~VVeeA~e~~~e~e~r~e~~E~EvD~lksQLADYQQALD~QQT 411 (1480)
T COG3096 362 IRLEEQNEVVEEANERQEENEARAEAAELEVDELKSQLADYQQALDVQQT 411 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 46677777778888888888999999999999999999999999998765
No 160
>KOG0964|consensus
Probab=71.90 E-value=83 Score=32.91 Aligned_cols=104 Identities=18% Similarity=0.289 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHH---HHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q psy14403 43 KIRDLTNEITRLKRQIELSAKE-HATFLLYDK---RVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAA 118 (168)
Q Consensus 43 Ki~El~~EI~kL~~e~e~~~~e-~s~~~~yek---rae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~ 118 (168)
-.+|+..++.+|.........+ ...+..+++ +-+.+-.+|++|...|.-.+- ||-....+...+-..-..|+.+
T Consensus 231 El~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~--ekeq~~a~~t~~~k~kt~lel~ 308 (1200)
T KOG0964|consen 231 ELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLRE--EKEQLKARETKISKKKTKLELK 308 (1200)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhhh
Confidence 3455566666665554433322 222222222 334455555555555543332 4443333333333333333333
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 119 NDIETRHLEEQFTERSKKQHQLHELEAEIE 148 (168)
Q Consensus 119 N~~~~~~ld~iF~eR~~~E~~i~~lE~eie 148 (168)
-...+.++..=-..|......++.++.+|+
T Consensus 309 ~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~ 338 (1200)
T KOG0964|consen 309 IKDLQDQITGNEQQRNLALHVLQKVKDKIE 338 (1200)
T ss_pred hHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 333333333333333444444444444443
No 161
>KOG4643|consensus
Probab=71.49 E-value=63 Score=33.77 Aligned_cols=41 Identities=29% Similarity=0.359 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Q psy14403 47 LTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQG 87 (168)
Q Consensus 47 l~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG 87 (168)
+.+|+.-|+++++.+.++...|.+-.+|++.-+.|++.|-.
T Consensus 203 lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre 243 (1195)
T KOG4643|consen 203 LRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALRE 243 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 45566677788888888888888888888888888887754
No 162
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=71.40 E-value=31 Score=29.01 Aligned_cols=77 Identities=17% Similarity=0.239 Sum_probs=59.9
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCH
Q psy14403 28 RQVQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNI 105 (168)
Q Consensus 28 RQV~DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~ 105 (168)
-+.+|.+==.--+..++..+..+..||.+-+++.. .-+.....|++......||..++|++..++--++-.+-+...
T Consensus 125 ~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~-~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~sti~i~l 201 (262)
T PF14257_consen 125 ISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAK-TVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDYSTITISL 201 (262)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceEEEEEEE
Confidence 34567665444667778888888888888887444 777888999999999999999999999999888876554443
No 163
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=71.26 E-value=75 Score=28.33 Aligned_cols=115 Identities=22% Similarity=0.290 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHh-------hcCCC---
Q psy14403 35 YYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKV-------NTQTN--- 104 (168)
Q Consensus 35 Yy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~-------~t~~d--- 104 (168)
|=+-+|.-++.++...+.-++++.....++ +-....-...|..|+..|+++|..---++.+. .+|.+
T Consensus 112 yqvd~Lkd~lee~eE~~~~~~re~~eK~~e---lEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~~~~ngd~~~ 188 (302)
T PF09738_consen 112 YQVDLLKDKLEELEETLAQLQREYREKIRE---LERQKRAHDSLREELDELREQLKQRDELIEKHGLVLVPDATNGDTSD 188 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCCCCCCCcccc
Confidence 566677777777777777777777533322 44444456677888888888887766666654 22222
Q ss_pred ---------HHHHHHHH-HHHHHhcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14403 105 ---------IADIEEEY-LELRAAND-IETRHLEEQFTERSKKQHQLHELEAEIEKLDM 152 (168)
Q Consensus 105 ---------~~~i~~e~-~~Lk~~N~-~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~ 152 (168)
+..|-.++ .-|....+ -.--.|=.+..+|+.+-.+|+++..++++.+.
T Consensus 189 ~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~L~~qv~klk~qLee~~~ 247 (302)
T PF09738_consen 189 EPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLKKLADEKEELLEQVRKLKLQLEERQS 247 (302)
T ss_pred CccccCCCcccccchhhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33343333 33333311 12234555667899999999999999976543
No 164
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=71.23 E-value=1.2e+02 Score=30.40 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=10.9
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHH
Q psy14403 31 QDKRYYEGLLQLKIRDLTNEITRLK 55 (168)
Q Consensus 31 ~DksYy~glLR~Ki~El~~EI~kL~ 55 (168)
+...++...++.++..+...+..+.
T Consensus 522 ~~~~~~~~~~~~~~e~l~~~~e~~~ 546 (908)
T COG0419 522 ELEEALKEELEEKLEKLENLLEELE 546 (908)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 165
>KOG0018|consensus
Probab=71.05 E-value=86 Score=32.85 Aligned_cols=111 Identities=16% Similarity=0.219 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HhhhHHH----HHHHHHHHHHHHHHHHhHhHHH----HHHHHHHhhcCCCHH
Q psy14403 42 LKIRDLTNEITRLKRQIELSA-------KEHATFL----LYDKRVKEMATELTELQGKLSD----YNLTMDKVNTQTNIA 106 (168)
Q Consensus 42 ~Ki~El~~EI~kL~~e~e~~~-------~e~s~~~----~yekrae~La~EI~~LQG~LAD----yNl~~Dk~~t~~d~~ 106 (168)
.+|.+.+.|++++++++.... ++-..+. .+-+..-.....|++....|++ |-......+.....+
T Consensus 227 ~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~rl~ 306 (1141)
T KOG0018|consen 227 ACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKRLE 306 (1141)
T ss_pred hhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhHHH
Confidence 455555555555555554443 3333333 2333344455566666666666 333344444444455
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14403 107 DIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDM 152 (168)
Q Consensus 107 ~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~ 152 (168)
.+...+...+..-......++.+=.+-..++..-...|.+|++..+
T Consensus 307 ~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q 352 (1141)
T KOG0018|consen 307 EIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQ 352 (1141)
T ss_pred HhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555555555555555555555555555555555444
No 166
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=70.93 E-value=70 Score=27.76 Aligned_cols=18 Identities=17% Similarity=0.458 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14403 41 QLKIRDLTNEITRLKRQI 58 (168)
Q Consensus 41 R~Ki~El~~EI~kL~~e~ 58 (168)
..+...+..++.+++.++
T Consensus 80 ~~~l~~l~~~~~~l~a~~ 97 (423)
T TIGR01843 80 EADAAELESQVLRLEAEV 97 (423)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 167
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=70.79 E-value=56 Score=26.56 Aligned_cols=83 Identities=17% Similarity=0.263 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14403 74 RVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMI 153 (168)
Q Consensus 74 rae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~ 153 (168)
.++.|...-+...-+|++...-+++.+. .|+-+.-..+.++..+-.-.++.-..+=..|-..|..++.++.=|++-..+
T Consensus 49 evD~Le~~er~aR~rL~eVS~~f~~ysE-~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l 127 (159)
T PF05384_consen 49 EVDKLEKRERQARQRLAEVSRNFDRYSE-EDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENL 127 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555556665555555444 445555556677777778888889999999999999999999999988877
Q ss_pred hhhh
Q psy14403 154 DISM 157 (168)
Q Consensus 154 ~~~~ 157 (168)
+-..
T Consensus 128 ~sqi 131 (159)
T PF05384_consen 128 VSQI 131 (159)
T ss_pred HHHH
Confidence 6543
No 168
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=70.46 E-value=36 Score=32.36 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q psy14403 36 YEGLLQLKIRDLTNEITRLKRQIELSAKEH------------ATFLLYDKRVKEMATELTELQGKLSDYNLTM 96 (168)
Q Consensus 36 y~glLR~Ki~El~~EI~kL~~e~e~~~~e~------------s~~~~yekrae~La~EI~~LQG~LADyNl~~ 96 (168)
=+-.+|.++..+..+=++|++|.+.+.+.. +.-..+++..+.|+.++..|+|.|.|..-=+
T Consensus 67 ~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 67 EVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666554411 2223455667778888888888888865444
No 169
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=70.16 E-value=90 Score=30.65 Aligned_cols=101 Identities=16% Similarity=0.136 Sum_probs=71.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCC-HH--HHHHHHHHHHHhcH---HHHHHHHHHHHHHH
Q psy14403 61 SAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTN-IA--DIEEEYLELRAAND---IETRHLEEQFTERS 134 (168)
Q Consensus 61 ~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d-~~--~i~~e~~~Lk~~N~---~~~~~ld~iF~eR~ 134 (168)
++...+...++=.....+.+|...|..+|...+-.+++..+|.. .+ .++.+...+++.-+ ..-..+.+.|.+|+
T Consensus 306 lqe~~a~v~q~~~e~~~l~~eaq~l~~~L~~~~~e~~~~~~~~s~~~al~~ele~~~l~A~l~~L~se~q~L~~~~~~r~ 385 (632)
T PF14817_consen 306 LQEQWAHVQQFLAEEDALNKEAQALSQRLQRLLEEIERRLSGSSEREALALELEVAGLKASLNALRSECQRLKEAAAERQ 385 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455556677888999999999999999998866542 22 22233333333333 45567889999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhh
Q psy14403 135 KKQHQLHELEAEIEKLDMIDISMWIDI 161 (168)
Q Consensus 135 ~~E~~i~~lE~eie~~~~~~~~~~~~~ 161 (168)
..+..++.-..+|.+.+.++.++.==|
T Consensus 386 e~~~~Lq~K~q~I~~frqlv~e~QeqI 412 (632)
T PF14817_consen 386 EALRSLQAKWQRILDFRQLVSEKQEQI 412 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988765433
No 170
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=70.07 E-value=80 Score=28.08 Aligned_cols=54 Identities=17% Similarity=0.163 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHhHhHHH
Q psy14403 38 GLLQLKIRDLTNEITRLKRQIELSA-KEHATFLLYDKRVKEMATELTELQGKLSD 91 (168)
Q Consensus 38 glLR~Ki~El~~EI~kL~~e~e~~~-~e~s~~~~yekrae~La~EI~~LQG~LAD 91 (168)
.-|+.+...|..|+..|+.-.+.++ .+.+.+..+..+...+-.+|.....+|.+
T Consensus 175 ~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e 229 (312)
T smart00787 175 PKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEE 229 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666555555432 23333333333333333333333333333
No 171
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=69.86 E-value=1.1e+02 Score=31.22 Aligned_cols=108 Identities=18% Similarity=0.252 Sum_probs=65.0
Q ss_pred ccccchhhhHHHHHHHHHHH-HHHHHHHHHHHHHHH---------------------HhhhHHHHHHHHHHHHHHHHHHH
Q psy14403 28 RQVQDKRYYEGLLQLKIRDL-TNEITRLKRQIELSA---------------------KEHATFLLYDKRVKEMATELTEL 85 (168)
Q Consensus 28 RQV~DksYy~glLR~Ki~El-~~EI~kL~~e~e~~~---------------------~e~s~~~~yekrae~La~EI~~L 85 (168)
.-|.--.|++|.|+.-+.+- -.||.||-.|+|..- -=++.-.++.+|..-|-+.+++-
T Consensus 334 ~KVrt~KYLLgELkaLVaeq~DsE~qRLitEvE~cislLPav~g~tniq~EIALA~QplrsENaqLrRrLrilnqqlreq 413 (861)
T PF15254_consen 334 EKVRTLKYLLGELKALVAEQEDSEVQRLITEVEACISLLPAVSGSTNIQVEIALAMQPLRSENAQLRRRLRILNQQLREQ 413 (861)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhhccccchhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 34666689999999999887 789999999888532 11222234557777777777775
Q ss_pred hHhH-----HHHHHHHHHhhc-CC----CHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q psy14403 86 QGKL-----SDYNLTMDKVNT-QT----NIADIEEEYLELRAANDIETRHLEEQFTERSK 135 (168)
Q Consensus 86 QG~L-----ADyNl~~Dk~~t-~~----d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~ 135 (168)
+-.= .|+|+=+--+.+ |+ -..+-......|..+|++..+.++..=.|.+.
T Consensus 414 e~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~ 473 (861)
T PF15254_consen 414 EKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKR 473 (861)
T ss_pred HhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4433 455554443332 21 23344444555666666666666544444333
No 172
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=69.81 E-value=63 Score=26.77 Aligned_cols=87 Identities=18% Similarity=0.287 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-----HHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHH
Q psy14403 39 LLQLKIRDLTNEITRLKRQIELSAKEHATFLL-----YDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYL 113 (168)
Q Consensus 39 lLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~-----yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~ 113 (168)
=++.++.++..+|..++.+.+.+...-..... -......+..++..++.+++-.=..++.++. .++...+...
T Consensus 17 C~~~~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~--~i~~~r~~l~ 94 (302)
T PF10186_consen 17 CVNNRLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRK--RIEQKRERLE 94 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 34455555555555555555555555555544 3334444444555544444444333333332 3334444444
Q ss_pred HHHHhcHHHHHHHH
Q psy14403 114 ELRAANDIETRHLE 127 (168)
Q Consensus 114 ~Lk~~N~~~~~~ld 127 (168)
+++..++..+..+.
T Consensus 95 ~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 95 ELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 173
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=69.77 E-value=51 Score=26.77 Aligned_cols=63 Identities=27% Similarity=0.336 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 69 LLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEI 147 (168)
Q Consensus 69 ~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~ei 147 (168)
..-+.+...|..+++.|+.++.|... +..+....|+....++..+=.+--..|+.+++++.|=
T Consensus 112 ~~~~~~l~~l~~~~~~L~~~~~~l~~----------------~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En 174 (194)
T PF08614_consen 112 SEKERRLAELEAELAQLEEKIKDLEE----------------ELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEEN 174 (194)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555554444444 4444444444444444444445555555555555543
No 174
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=69.43 E-value=78 Score=27.73 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHH
Q psy14403 67 TFLLYDKRVKEMATELTELQGKLSDY 92 (168)
Q Consensus 67 ~~~~yekrae~La~EI~~LQG~LADy 92 (168)
....++++...+..++.+.+.+|.+|
T Consensus 171 a~~fl~~ql~~~~~~l~~ae~~l~~f 196 (362)
T TIGR01010 171 TIAFAENEVKEAEQRLNATKAELLKY 196 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555544
No 175
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=69.39 E-value=76 Score=27.54 Aligned_cols=28 Identities=7% Similarity=0.127 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q psy14403 70 LYDKRVKEMATELTELQGKLSDYNLTMD 97 (168)
Q Consensus 70 ~yekrae~La~EI~~LQG~LADyNl~~D 97 (168)
.++...+.+..+++.++.++.-+..+++
T Consensus 162 ~~~~~l~~~~~~l~~~~~~~~~~~~L~~ 189 (423)
T TIGR01843 162 GLQAQLQALRQQLEVISEELEARRKLKE 189 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555544444
No 176
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=69.38 E-value=1e+02 Score=29.05 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14403 41 QLKIRDLTNEITRLKRQIELS 61 (168)
Q Consensus 41 R~Ki~El~~EI~kL~~e~e~~ 61 (168)
-.++.+|+.||.+|+..++..
T Consensus 171 ~~kve~L~~Ei~~lke~l~~~ 191 (522)
T PF05701_consen 171 EEKVEELSKEIIALKESLESA 191 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777776653
No 177
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=69.21 E-value=22 Score=33.10 Aligned_cols=62 Identities=10% Similarity=0.212 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHh
Q psy14403 37 EGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKV 99 (168)
Q Consensus 37 ~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~ 99 (168)
..|++..+.+|..+|..+++.+...+. ...-..+..+.+.+..++..|+..+.-....++.+
T Consensus 165 ~~L~~~Rl~~L~~qi~~~~~~l~~~~~-~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l 226 (475)
T PF10359_consen 165 IELIQERLDELEEQIEKHEEKLGELEL-NPDDPELKSDIEELERHISSLKERIEFLENMLEDL 226 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999998775 44444555666666666666666666666666555
No 178
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=69.04 E-value=55 Score=25.78 Aligned_cols=33 Identities=15% Similarity=0.331 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhh
Q psy14403 68 FLLYDKRVKEMATELTELQGKLSDYNLTMDKVN 100 (168)
Q Consensus 68 ~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~ 100 (168)
..++.++...|-.+|..++.+|.+.+-.++-..
T Consensus 37 I~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~ 69 (143)
T PF12718_consen 37 ITSLQKKNQQLEEELDKLEEQLKEAKEKLEESE 69 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 456677888888888888888888887776654
No 179
>KOG0963|consensus
Probab=69.03 E-value=43 Score=32.86 Aligned_cols=65 Identities=20% Similarity=0.313 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH----HHhhcCCCHHHHHHHHHHHHH
Q psy14403 47 LTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTM----DKVNTQTNIADIEEEYLELRA 117 (168)
Q Consensus 47 l~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~----Dk~~t~~d~~~i~~e~~~Lk~ 117 (168)
.-.||.+|..+++.++.. ..+--+..+..|..|+.+|--++..+ .+++.-.|+++|..++..|++
T Consensus 290 kd~~i~~L~~di~~~~~S------~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk~ 358 (629)
T KOG0963|consen 290 KDSEIAQLSNDIERLEAS------LVEEREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILKA 358 (629)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHH
Confidence 344555555555444322 12223334444444444444443333 344555777777777777754
No 180
>KOG1029|consensus
Probab=69.02 E-value=54 Score=33.58 Aligned_cols=101 Identities=19% Similarity=0.226 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc-----CCCHHHHHHHHHHH
Q psy14403 41 QLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNT-----QTNIADIEEEYLEL 115 (168)
Q Consensus 41 R~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t-----~~d~~~i~~e~~~L 115 (168)
|.++.|+.+-.++=++.+ -..++-..+++.+.++|---+..|.|+|.|.-.=+.+..+ +...+-...+..+|
T Consensus 415 rar~qem~~Qk~reqe~i---v~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~ql 491 (1118)
T KOG1029|consen 415 RARRQEMLNQKNREQEWI---VYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQL 491 (1118)
T ss_pred HHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHH
Confidence 445555554444433333 3356666778888888988999999999987544433322 11233344455566
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 116 RAANDIETRHLEEQFTERSKKQHQLHELE 144 (168)
Q Consensus 116 k~~N~~~~~~ld~iF~eR~~~E~~i~~lE 144 (168)
.++-...++-+=.+--|++..+.++++..
T Consensus 492 qarikE~q~kl~~l~~Ekq~l~~qlkq~q 520 (1118)
T KOG1029|consen 492 QARIKELQEKLQKLAPEKQELNHQLKQKQ 520 (1118)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Confidence 66666666666666677777777666543
No 181
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=68.91 E-value=1.1e+02 Score=29.13 Aligned_cols=114 Identities=18% Similarity=0.165 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q psy14403 39 LLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAA 118 (168)
Q Consensus 39 lLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~ 118 (168)
.+...+..+......|..+++.....=.--..-...+..+..+++.|++.+.+....+.. ..+..+.|...+.++..+
T Consensus 310 ~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~--~~~~yS~i~~~l~~~~~~ 387 (560)
T PF06160_consen 310 ELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEE--QQVPYSEIQEELEEIEEQ 387 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCcCHHHHHHHHHHHHHH
Confidence 344555555555556666655554433222233446666777777777665554433332 256788888888888888
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14403 119 NDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMID 154 (168)
Q Consensus 119 N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~ 154 (168)
-+...+....++..-+.....=+.....+...+...
T Consensus 388 l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l 423 (560)
T PF06160_consen 388 LEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKL 423 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887777777777777776665543
No 182
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=68.76 E-value=73 Score=29.86 Aligned_cols=84 Identities=20% Similarity=0.347 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHH----h
Q psy14403 43 KIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRA----A 118 (168)
Q Consensus 43 Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~----~ 118 (168)
..+.+..||+++.+.+....+..+ .+++....+..+|..+..+|...=.-+++++- +.+++....+.|.. +
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~---kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~--~I~~~~~~l~~l~~q~r~q 113 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRA---KLEKQLKSLETEIASLEAQLIETADDLKKLRK--QIADLNARLNALEVQEREQ 113 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHHHHHHH
Confidence 345677777777777766655443 45666666667777777777665555555443 45555555555543 3
Q ss_pred cHHHHHHHHHHHH
Q psy14403 119 NDIETRHLEEQFT 131 (168)
Q Consensus 119 N~~~~~~ld~iF~ 131 (168)
-...++.|+.+|.
T Consensus 114 r~~La~~L~A~~r 126 (420)
T COG4942 114 RRRLAEQLAALQR 126 (420)
T ss_pred HHHHHHHHHHHHh
Confidence 3456667777766
No 183
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=68.14 E-value=38 Score=29.97 Aligned_cols=63 Identities=14% Similarity=0.183 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhh
Q psy14403 38 GLLQLKIRDLTNEITRLKRQIELS----AKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVN 100 (168)
Q Consensus 38 glLR~Ki~El~~EI~kL~~e~e~~----~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~ 100 (168)
-.||.|.+++..|+..|....+.. .........++...+.+..+...+++++.+.+...+..+
T Consensus 2 ~el~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (378)
T TIGR01554 2 SELKEQREEIVAEIRSLLDKAEKLEKELTAAALEKEELETDVEKLKEEIKLLEDAIADLEKVTEETK 68 (378)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 368999999999999999732222 222223345667777777777777777777666655443
No 184
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=67.11 E-value=95 Score=27.81 Aligned_cols=104 Identities=17% Similarity=0.261 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcH
Q psy14403 41 QLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAAND 120 (168)
Q Consensus 41 R~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~ 120 (168)
+.|+.+...++..|.++++.+....+. |-.++..|+.++.+..-++.-+=--.|.++- ..+.+.+++.++..+.+
T Consensus 150 ~~k~~e~~~~~~el~aei~~lk~~~~e---~~eki~~la~eaqe~he~m~k~~~~~De~Rk--eade~he~~ve~~~~~~ 224 (294)
T COG1340 150 AKKALEENEKLKELKAEIDELKKKARE---IHEKIQELANEAQEYHEEMIKLFEEADELRK--EADELHEEFVELSKKID 224 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhH
Confidence 345555556666666666666655554 4467777888777777777777777777765 45567777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 121 IETRHLEEQFTERSKKQHQLHELEAEIEK 149 (168)
Q Consensus 121 ~~~~~ld~iF~eR~~~E~~i~~lE~eie~ 149 (168)
...+.++.+..+=.+.+..|..+......
T Consensus 225 e~~ee~~~~~~elre~~k~ik~l~~~~~~ 253 (294)
T COG1340 225 ELHEEFRNLQNELRELEKKIKALRAKEKA 253 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777766655443
No 185
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=66.58 E-value=1.5e+02 Score=29.87 Aligned_cols=53 Identities=21% Similarity=0.289 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q psy14403 43 KIRDLTNEITRLKRQIELSA----KEHATFLLYDKRVKEMATELTELQGKLSDYNLT 95 (168)
Q Consensus 43 Ki~El~~EI~kL~~e~e~~~----~e~s~~~~yekrae~La~EI~~LQG~LADyNl~ 95 (168)
...++..+..++..+.+.++ +-...+-...-+.+++-.-|.+|+.+|+..|-.
T Consensus 590 ~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS 646 (769)
T PF05911_consen 590 EKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKES 646 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443332 233344444555566666666666666655433
No 186
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=66.29 E-value=84 Score=26.89 Aligned_cols=83 Identities=17% Similarity=0.242 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHhH---hHHHHHHHHHHhhc-----CCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q psy14403 68 FLLYDKRVKEMATELTELQG---KLSDYNLTMDKVNT-----QTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQ 139 (168)
Q Consensus 68 ~~~yekrae~La~EI~~LQG---~LADyNl~~Dk~~t-----~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~ 139 (168)
-..|++....+..|+..++. -|.||..-++.|.. --..-.|.++++.|..--.+.+.+-+..+..=..+.++
T Consensus 10 ~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~ee 89 (230)
T PF10146_consen 10 TLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEE 89 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666555544 36777666655543 11223334444444444444444434333333333344
Q ss_pred HHHHHHHHHHH
Q psy14403 140 LHELEAEIEKL 150 (168)
Q Consensus 140 i~~lE~eie~~ 150 (168)
...+-.+|.++
T Consensus 90 y~~Lk~~in~~ 100 (230)
T PF10146_consen 90 YKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 187
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=66.15 E-value=1.7e+02 Score=30.40 Aligned_cols=30 Identities=13% Similarity=0.392 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKEHATFL 69 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e~s~~~ 69 (168)
+...+..+..++..++.+++.++.....|.
T Consensus 311 ~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye 340 (1201)
T PF12128_consen 311 LNKELSALNADLARIKSELDEIEQQKKDYE 340 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555544443
No 188
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=65.75 E-value=28 Score=25.35 Aligned_cols=48 Identities=23% Similarity=0.381 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q psy14403 75 VKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFT 131 (168)
Q Consensus 75 ae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~ 131 (168)
.+.|..+|..||..|.+. ++ .++.|+.+-..|+..|+-.+.-|+.++.
T Consensus 18 k~~Li~ei~~LQ~sL~~L---~~------Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 18 KEELIQEILELQDSLEAL---SD------RVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHH---HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999988764 33 3567889999999999999999998864
No 189
>PLN02320 seryl-tRNA synthetase
Probab=65.31 E-value=35 Score=32.53 Aligned_cols=35 Identities=14% Similarity=-0.000 Sum_probs=21.6
Q ss_pred cCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q psy14403 101 TQTNIADIEEEYLELRAANDIETRHLEEQFTERSK 135 (168)
Q Consensus 101 t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~ 135 (168)
.+.+.+.+..+...|+.+-....+.+..+-.+...
T Consensus 128 ~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~ 162 (502)
T PLN02320 128 EPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQL 162 (502)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777766666666666666554443
No 190
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=64.43 E-value=50 Score=29.24 Aligned_cols=84 Identities=21% Similarity=0.302 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 65 HATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELE 144 (168)
Q Consensus 65 ~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE 144 (168)
.+.+...+.+..+...++.+++.+|+.+..-.+.... ....++.++.....+-++..+-++.+-.++.+=.+.+..++
T Consensus 227 ~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~--e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~ 304 (344)
T PF12777_consen 227 EAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQK--EKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELE 304 (344)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHH
Confidence 4445555666666666777777777766666665443 36777778888888888888888888888888888888888
Q ss_pred HHHHHH
Q psy14403 145 AEIEKL 150 (168)
Q Consensus 145 ~eie~~ 150 (168)
.++..+
T Consensus 305 ~~~~~l 310 (344)
T PF12777_consen 305 EQLKNL 310 (344)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 777654
No 191
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=64.29 E-value=17 Score=34.46 Aligned_cols=50 Identities=12% Similarity=0.164 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14403 105 IADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMID 154 (168)
Q Consensus 105 ~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~ 154 (168)
..+-+..+++|+.+-+..+.+++.+=..++..|+.|+++|.++..++.-.
T Consensus 71 LteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555566666666666666667777777776665443
No 192
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=64.16 E-value=2.2 Score=41.23 Aligned_cols=117 Identities=18% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhh-cCCCH
Q psy14403 37 EGLLQLKIRDLTNEITRLKR----------QIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVN-TQTNI 105 (168)
Q Consensus 37 ~glLR~Ki~El~~EI~kL~~----------e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~-t~~d~ 105 (168)
+--|-..+..+..|+.+|.. |...++..-..+-..+..+-++.-++..|+.+|.++..+..... +...|
T Consensus 259 i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sP 338 (722)
T PF05557_consen 259 IRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSP 338 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCH
Confidence 33455555555555554443 22233333333444445555566677778888888887666543 55679
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14403 106 ADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMI 153 (168)
Q Consensus 106 ~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~ 153 (168)
++|...+..++..+......+..+=.+-..++..+..++.++.+....
T Consensus 339 e~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~ 386 (722)
T PF05557_consen 339 EDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKE 386 (722)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888888888888888888888888888777665443
No 193
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=63.96 E-value=1.2e+02 Score=27.70 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHh
Q psy14403 73 KRVKEMATELTELQGKLSDYNLTMDKV 99 (168)
Q Consensus 73 krae~La~EI~~LQG~LADyNl~~Dk~ 99 (168)
.+...+..++..++.++++....++.+
T Consensus 204 ~~l~~l~~~l~~~~~~l~~~~a~~~~l 230 (498)
T TIGR03007 204 SEISEAQEELEAARLELNEAIAQRDAL 230 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 194
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=63.91 E-value=44 Score=22.86 Aligned_cols=51 Identities=22% Similarity=0.389 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCC
Q psy14403 43 KIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQT 103 (168)
Q Consensus 43 Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~ 103 (168)
|++||-+++.++...+.... +..+.+..+|.++.....|.=.+-+-++-+.
T Consensus 1 Ri~elEn~~~~~~~~i~tvk----------~en~~i~~~ve~i~envk~ll~lYE~Vs~~i 51 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVK----------KENEEISESVEKIEENVKDLLSLYEVVSNQI 51 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 46777777777776655444 3345556666666666555544444444333
No 195
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=62.92 E-value=38 Score=27.86 Aligned_cols=9 Identities=33% Similarity=0.641 Sum_probs=4.1
Q ss_pred HHHHHHHHh
Q psy14403 91 DYNLTMDKV 99 (168)
Q Consensus 91 DyNl~~Dk~ 99 (168)
||-+++.-+
T Consensus 140 DY~~L~~Im 148 (161)
T TIGR02894 140 DYQTLIDIM 148 (161)
T ss_pred HHHHHHHHH
Confidence 455544433
No 196
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=62.41 E-value=40 Score=23.29 Aligned_cols=19 Identities=32% Similarity=0.552 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14403 43 KIRDLTNEITRLKRQIELS 61 (168)
Q Consensus 43 Ki~El~~EI~kL~~e~e~~ 61 (168)
.++.+..++.+++.+++..
T Consensus 25 ~~~~~~~~~~~~~~~~~~l 43 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKL 43 (85)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 197
>TIGR02890 spore_yteA sporulation protein, yteA family. Members of this predicted regulatory protein are found only in endospore-forming members of the Firmicutes group of bacteria, and in nearly every such species; Clostridium perfringens seems to be an exception. The member from Bacillus subtilis, the model system for the study of the sporulation program, has been designated both yteA and yzwB. Some (but not all) members of this family show a strong sequence match to PFAM family pfam01258 the C4-type zinc finger protein, DksA/TraR family, but only one of the four key Cys residues is conserved. All members of this protein family share an additional C-terminal domain. The function of proteins in this family is unknown. YteA was detected in mature spores of Bacillus subtilis by Kuwana, et al., and appears to be expressed under control of sigma-K.
Probab=62.33 E-value=67 Score=25.93 Aligned_cols=70 Identities=10% Similarity=0.219 Sum_probs=45.4
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHH----------h--hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q psy14403 32 DKRYYEGLLQLKIRDLTNEITRLKRQIEL--SAK----------E--HATFLLYDKRVKEMATELTELQGKLSDYNLTMD 97 (168)
Q Consensus 32 DksYy~glLR~Ki~El~~EI~kL~~e~e~--~~~----------e--~s~~~~yekrae~La~EI~~LQG~LADyNl~~D 97 (168)
+..+|-.+|..+..+|..+|..+..++.. ... + ......+++... ..=....+.+|++++-|+.
T Consensus 2 ql~~~r~~L~~~r~~L~~~i~~~~~~~~~~~~~~~~~~~s~~~~d~~D~a~~~~e~~~~--~~l~~~~~~~L~~Ie~AL~ 79 (159)
T TIGR02890 2 QLAELKNMLLQEKKELEQRLKQMNKEDGIASQRESTGELSQYDNHPADLATELYEREKD--IALREHEERELREIEHALQ 79 (159)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccccCCCcchHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999887642 100 0 111122222221 1224455677999999999
Q ss_pred HhhcCC
Q psy14403 98 KVNTQT 103 (168)
Q Consensus 98 k~~t~~ 103 (168)
++..|+
T Consensus 80 Ri~~G~ 85 (159)
T TIGR02890 80 KIENGT 85 (159)
T ss_pred HHhCCC
Confidence 998764
No 198
>PRK11020 hypothetical protein; Provisional
Probab=61.74 E-value=38 Score=26.58 Aligned_cols=42 Identities=19% Similarity=0.375 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHhHh
Q psy14403 47 LTNEITRLKRQIELSAKE---------HATFLLYDKRVKEMATELTELQGK 88 (168)
Q Consensus 47 l~~EI~kL~~e~e~~~~e---------~s~~~~yekrae~La~EI~~LQG~ 88 (168)
+.+||.+|+..++...+. ...+..+.+..+.|..+|..|.++
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 53 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEV 53 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888877653 344667777777777777777664
No 199
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=61.64 E-value=42 Score=21.78 Aligned_cols=39 Identities=23% Similarity=0.350 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 108 IEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAE 146 (168)
Q Consensus 108 i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~e 146 (168)
++.+|..|+..=+.....-|.++.+....-.++..+-..
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555666666666666666666666555555555443
No 200
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=61.60 E-value=1.2e+02 Score=27.12 Aligned_cols=41 Identities=10% Similarity=0.327 Sum_probs=32.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc
Q psy14403 61 SAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNT 101 (168)
Q Consensus 61 ~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t 101 (168)
..+-+.+.....+-.++|.++|.+|+.++..|+..+..-..
T Consensus 76 ~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~ 116 (301)
T PF06120_consen 76 IAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGI 116 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 34556677778888999999999999999999987666444
No 201
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=61.54 E-value=1.6e+02 Score=28.51 Aligned_cols=51 Identities=6% Similarity=0.115 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHH
Q psy14403 74 RVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQF 130 (168)
Q Consensus 74 rae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF 130 (168)
.+..+....+.|+++|++++.-+..+. ..+.++..|+-..+-.++..+.+.
T Consensus 346 ~~~~a~~~~~~L~~~l~~~~~~~~~~~------~~~~e~~~L~Re~~~~~~~Y~~ll 396 (754)
T TIGR01005 346 QADAAQARESQLVSDVNQLKAASAQAG------EQQVDLDALQRDAAAKRQLYESYL 396 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCc------HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443333322 235566666655555555554433
No 202
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=61.42 E-value=1.2e+02 Score=27.03 Aligned_cols=16 Identities=19% Similarity=0.281 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14403 39 LLQLKIRDLTNEITRL 54 (168)
Q Consensus 39 lLR~Ki~El~~EI~kL 54 (168)
-|++++.++..++..|
T Consensus 258 ~l~~~l~~le~~l~~l 273 (444)
T TIGR03017 258 NLKTDIARAESKLAEL 273 (444)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556666666555554
No 203
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=61.31 E-value=48 Score=25.32 Aligned_cols=31 Identities=13% Similarity=0.091 Sum_probs=14.8
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 118 ANDIETRHLEEQFTERSKKQHQLHELEAEIE 148 (168)
Q Consensus 118 ~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie 148 (168)
.--+...++|.+=-..++++..+..|..|+.
T Consensus 41 ~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 41 ALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444445555555555544
No 204
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.97 E-value=58 Score=23.68 Aligned_cols=44 Identities=20% Similarity=0.212 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHhHhHH
Q psy14403 47 LTNEITRLKRQIELSAKEHA----TFLLYDKRVKEMATELTELQGKLS 90 (168)
Q Consensus 47 l~~EI~kL~~e~e~~~~e~s----~~~~yekrae~La~EI~~LQG~LA 90 (168)
|..||+-|+++...+..+.+ +.-.++++++.|..|-...|..|-
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlr 70 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLR 70 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443333322 334566777777777777776664
No 205
>PF13166 AAA_13: AAA domain
Probab=60.69 E-value=1.6e+02 Score=28.07 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 37 EGLLQLKIRDLTNEITRLKRQIEL 60 (168)
Q Consensus 37 ~glLR~Ki~El~~EI~kL~~e~e~ 60 (168)
...+...+..+...|..+...++.
T Consensus 324 ~~~~~~~~~~l~~~l~~l~~~L~~ 347 (712)
T PF13166_consen 324 KEELKSAIEALKEELEELKKALEK 347 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555444
No 206
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=60.55 E-value=2.8 Score=41.74 Aligned_cols=111 Identities=18% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHH
Q psy14403 38 GLLQLKIRDLTNEITRLKRQIELSAKEHA----TFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYL 113 (168)
Q Consensus 38 glLR~Ki~El~~EI~kL~~e~e~~~~e~s----~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~ 113 (168)
+-++.+..++..|..+++.+...+..+-. .|-.+.-..+.+..+.+.|+++|.|++.-++..+. .+.+++....
T Consensus 387 ~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k--~v~eLek~kr 464 (859)
T PF01576_consen 387 AEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGK--SVHELEKAKR 464 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcc--chHHHHHHHH
Confidence 33444444444444444444433333221 12222333444445555555555554443333222 2344444444
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 114 ELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKL 150 (168)
Q Consensus 114 ~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~ 150 (168)
.|....+.....++++=...+..|.....++.+++.+
T Consensus 465 ~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~ 501 (859)
T PF01576_consen 465 RLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQL 501 (859)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555444444444444444444433
No 207
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=60.40 E-value=77 Score=30.35 Aligned_cols=75 Identities=15% Similarity=0.118 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 68 FLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELE 144 (168)
Q Consensus 68 ~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE 144 (168)
+...+++.+.|-.+|..|+.+++.++..+-.-..-.+. -...+.++..+-+...+.++++|.+--+.++.+.+++
T Consensus 558 ~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~~ 632 (638)
T PRK10636 558 TQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQS--RKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQML 632 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455666678888888888887777765221110010 0113444444555566778888888877777665555
No 208
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=60.29 E-value=1.9e+02 Score=29.08 Aligned_cols=27 Identities=15% Similarity=0.379 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHH
Q psy14403 71 YDKRVKEMATELTELQGKLSDYNLTMD 97 (168)
Q Consensus 71 yekrae~La~EI~~LQG~LADyNl~~D 97 (168)
.+...+.+...+++++..|+....=+.
T Consensus 615 ~~d~lE~~~~qL~E~E~~L~eLq~eL~ 641 (769)
T PF05911_consen 615 CQDQLESLKNQLKESEQKLEELQSELE 641 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444
No 209
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=60.23 E-value=2.9 Score=41.68 Aligned_cols=70 Identities=26% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 70 LYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLH 141 (168)
Q Consensus 70 ~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~ 141 (168)
..++..+.+-.++.+|++++.+.+-.+.-++.. ..-+..+..+|..+.+.....+..+-..+...+.++.
T Consensus 177 ~~Ek~~K~lE~qL~El~~klee~er~~~el~~~--k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLe 246 (859)
T PF01576_consen 177 EAEKKRKQLEAQLNELQAKLEESERQRNELTEQ--KAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLE 246 (859)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666667777777777766666665554432 2233333333333333333333333333333333333
No 210
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=59.91 E-value=76 Score=24.26 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=11.4
Q ss_pred HHHHHHHHhHhHHHHHHHHHHhhc
Q psy14403 78 MATELTELQGKLSDYNLTMDKVNT 101 (168)
Q Consensus 78 La~EI~~LQG~LADyNl~~Dk~~t 101 (168)
.+.+|..|..++..+..-+..+.+
T Consensus 57 ~~~~L~~lr~e~~~~~~~~~~l~~ 80 (132)
T PF07926_consen 57 DIKELQQLREELQELQQEINELKA 80 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554444444433
No 211
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=59.39 E-value=1.6e+02 Score=27.95 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q psy14403 69 LLYDKRVKEMATELTELQGKLSDYNLTMD 97 (168)
Q Consensus 69 ~~yekrae~La~EI~~LQG~LADyNl~~D 97 (168)
..++.+...+..+...++.+++....-++
T Consensus 63 ~~~~~~l~~~~~~~~~~~~~~~~l~~~le 91 (475)
T PRK10361 63 ELLNNEVRSLQSINTSLEADLREVTTRME 91 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555555444433
No 212
>KOG4403|consensus
Probab=58.91 E-value=1.7e+02 Score=28.08 Aligned_cols=107 Identities=19% Similarity=0.266 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH------HhhcCCCHHHHHHHHHHHHHhcHH
Q psy14403 48 TNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMD------KVNTQTNIADIEEEYLELRAANDI 121 (168)
Q Consensus 48 ~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~D------k~~t~~d~~~i~~e~~~Lk~~N~~ 121 (168)
..-.++|.+.++-+.+...++.-++||.+....|-+...-+=.|.-..++ -++.|+.-+-...+++.|+.+-.+
T Consensus 241 kehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~L~k 320 (575)
T KOG4403|consen 241 KEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVALEK 320 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHH
Confidence 55688999999999999999999999988877774433333333333333 335555555555555555555554
Q ss_pred HHHHHH----------------------HHH--HHHHHHHHHHHHHHHHHHHHhhhh
Q psy14403 122 ETRHLE----------------------EQF--TERSKKQHQLHELEAEIEKLDMID 154 (168)
Q Consensus 122 ~~~~ld----------------------~iF--~eR~~~E~~i~~lE~eie~~~~~~ 154 (168)
..++++ --| ..|+..|.+++..-+..+++++--
T Consensus 321 AEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKr 377 (575)
T KOG4403|consen 321 AEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKR 377 (575)
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 444333 233 345666667776666666666543
No 213
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=58.83 E-value=94 Score=26.26 Aligned_cols=57 Identities=16% Similarity=0.212 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH
Q psy14403 36 YEGLLQLKIRDLTNEITRLKRQIE----LSAKEHATFLLYDKRVKEMATELTELQGKLSDY 92 (168)
Q Consensus 36 y~glLR~Ki~El~~EI~kL~~e~e----~~~~e~s~~~~yekrae~La~EI~~LQG~LADy 92 (168)
|++.+|.-+..+..-+.......- ..-..-..|..+.++.+.|.+|+.+|+.+++++
T Consensus 35 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 35 SLSPVRQVVGDVVSPVQRVVNAPREFVSGVFESLASLFDLREENEELKKELLELESRLQEL 95 (276)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555544443333 333333445555666666666666666666555
No 214
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=58.79 E-value=77 Score=25.98 Aligned_cols=34 Identities=21% Similarity=0.434 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy14403 38 GLLQLKIRDLTNEITRLKRQIELSAKEHATFLLY 71 (168)
Q Consensus 38 glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~y 71 (168)
.+|..+.+.+...|..|++.++...-+-.+|..+
T Consensus 88 ~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll 121 (175)
T PRK13182 88 EQLEAQLNTITRRLDELERQLQQKADDVVSYQLL 121 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3344444444444444444444444444444333
No 215
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=58.70 E-value=2e+02 Score=28.77 Aligned_cols=106 Identities=22% Similarity=0.355 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHH
Q psy14403 38 GLLQLKIRDLTNEITRLKRQIELSAKEHATF----LLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYL 113 (168)
Q Consensus 38 glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~----~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~ 113 (168)
.-|..+|-++.+|+..+..++....-++.-+ .-+-+..+.+-.+...|..+|-+|=. +. .-+-.+|.
T Consensus 30 ~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~-----rE----~rll~dys 100 (717)
T PF09730_consen 30 AYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKF-----RE----ARLLQDYS 100 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH----HHHhhhhH
Confidence 3466788888888888877777665555433 34455667777777777777777732 22 34567888
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhh
Q psy14403 114 ELRAANDIETRHLEEQFTERSKKQH---QLHELEAEIEKLDM 152 (168)
Q Consensus 114 ~Lk~~N~~~~~~ld~iF~eR~~~E~---~i~~lE~eie~~~~ 152 (168)
+|.+.|--.+++|..+=..-.+-|. +|+.+++|++-++.
T Consensus 101 elEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~ 142 (717)
T PF09730_consen 101 ELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNS 142 (717)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888898888888776544444443 66777777666554
No 216
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=58.63 E-value=32 Score=24.23 Aligned_cols=39 Identities=23% Similarity=0.203 Sum_probs=29.2
Q ss_pred ccccc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14403 28 RQVQD--KRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHA 66 (168)
Q Consensus 28 RQV~D--ksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s 66 (168)
+--.| .=|-.+.|-..|.-|+.||.||+.|.-.-.-.++
T Consensus 16 ~i~~d~LsllsV~El~eRIalLq~EIeRlkAe~~kK~~srs 56 (65)
T COG5509 16 EIGNDALSLLSVAELEERIALLQAEIERLKAELAKKKASRS 56 (65)
T ss_pred ccchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccHH
Confidence 44556 3355788999999999999999998876554444
No 217
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=58.57 E-value=12 Score=24.81 Aligned_cols=23 Identities=13% Similarity=0.453 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHh
Q psy14403 66 ATFLLYDKRVKEMATELTELQGK 88 (168)
Q Consensus 66 s~~~~yekrae~La~EI~~LQG~ 88 (168)
..|..+|++.+++..+|++||.+
T Consensus 12 e~~d~IEqkiedid~qIaeLe~K 34 (46)
T PF08946_consen 12 EHYDNIEQKIEDIDEQIAELEAK 34 (46)
T ss_dssp ---THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHhHHHHHHHHHHHHHH
Confidence 46888999999999999999975
No 218
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=57.93 E-value=1.9e+02 Score=28.23 Aligned_cols=114 Identities=18% Similarity=0.319 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHH----HHHHHHHhhcCCCHHHHHHH
Q psy14403 36 YEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSD----YNLTMDKVNTQTNIADIEEE 111 (168)
Q Consensus 36 y~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LAD----yNl~~Dk~~t~~d~~~i~~e 111 (168)
|+--++....-|..||.+++.---..+.+.+.+..|+++.+++-+-+.++-+.++- |-.+.|. .+++++.
T Consensus 317 ~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~------l~~~~~~ 390 (570)
T COG4477 317 YLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDN------LEEIEKA 390 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHH------HHHHHHH
Confidence 45556777778888888888887778888888888988888777666555444432 2222222 2334444
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy14403 112 YLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMIDI 155 (168)
Q Consensus 112 ~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~~ 155 (168)
+..+...-++.++.|-.|=.+=.+..+.+..+-..+...+|.++
T Consensus 391 l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~me 434 (570)
T COG4477 391 LTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYME 434 (570)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555566666677777766654
No 219
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=57.80 E-value=1.7e+02 Score=27.59 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=20.1
Q ss_pred HHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q psy14403 80 TELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAA 118 (168)
Q Consensus 80 ~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~ 118 (168)
.++.+++.+|.-+|-+..|.+ .+++++......++.+
T Consensus 301 ~~L~ele~RL~~l~~LkrKyg--~s~e~l~~~~~~l~~e 337 (563)
T TIGR00634 301 ERLNEIEERLAQIKRLKRKYG--ASVEEVLEYAEKIKEE 337 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHH
Confidence 345556666666666665555 3555555555554433
No 220
>PLN03085 nucleobase:cation symporter-1; Provisional
Probab=57.73 E-value=30 Score=29.77 Aligned_cols=54 Identities=11% Similarity=0.212 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q psy14403 44 IRDLTNEITRLKRQIELSAK--EHATFLLYDKRVKEMATELTELQGKLSDYNLTMD 97 (168)
Q Consensus 44 i~El~~EI~kL~~e~e~~~~--e~s~~~~yekrae~La~EI~~LQG~LADyNl~~D 97 (168)
..||..+|.++...+...=. .......+....+.++.+|++|-..+-.||+++=
T Consensus 148 ~KEI~~~i~~lR~~Lr~~w~~~s~~~~~~W~~~~~~~qe~Ir~LNkkIdkYNLIVP 203 (221)
T PLN03085 148 NKEIRGQINEWRSALKKAWANRCEGDDSQWIEDSRLLQEQLRQINNKVFRYNLIVP 203 (221)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 45666677666665544211 1111223444455555555555555555555443
No 221
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=57.68 E-value=1.1e+02 Score=25.58 Aligned_cols=109 Identities=18% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy14403 38 GLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRA 117 (168)
Q Consensus 38 glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~ 117 (168)
...+.+++++..|...|..+++...++-..+..| .+.+...|..++.++++.+ ..++++......|.-
T Consensus 38 ~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~---~~~l~~~v~~q~~el~~L~---------~qi~~~~~~~~~l~p 105 (251)
T PF11932_consen 38 QQSQKRIDQWDDEKQELLAEYRQLEREIENLEVY---NEQLERQVASQEQELASLE---------QQIEQIEETRQELVP 105 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Q ss_pred hcHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy14403 118 ANDIETRHLEEQFT-----ERSKKQHQLHELEAEIEKLDMIDISMW 158 (168)
Q Consensus 118 ~N~~~~~~ld~iF~-----eR~~~E~~i~~lE~eie~~~~~~~~~~ 158 (168)
--.++-..++.... -..+.-..+..|..-+..-+-.+..+|
T Consensus 106 ~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~~~dv~~~ek~ 151 (251)
T PF11932_consen 106 LMEQMIDELEQFVELDLPFLLEERQERLARLRAMLDDADVSLAEKF 151 (251)
T ss_pred HHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhhccCCCHHHHH
No 222
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=57.52 E-value=32 Score=23.78 Aligned_cols=33 Identities=27% Similarity=0.226 Sum_probs=27.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14403 34 RYYEGLLQLKIRDLTNEITRLKRQIELSAKEHA 66 (168)
Q Consensus 34 sYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s 66 (168)
.|=+..|...|.-|..||.|+..++..-...++
T Consensus 20 ~lSv~EL~~RIa~L~aEI~R~~~~~~~K~a~r~ 52 (59)
T PF06698_consen 20 LLSVEELEERIALLEAEIARLEAAIAKKSASRA 52 (59)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356889999999999999999999887655443
No 223
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=57.35 E-value=1.6e+02 Score=27.01 Aligned_cols=57 Identities=16% Similarity=0.253 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNT 101 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t 101 (168)
+..++..+..++..|.+.+. ...+-.-.+++.++.+|+..|.+.+..|+.+.+....
T Consensus 4 ~~~~~e~~~~~~~~le~~~~-----~~~~w~d~~~~~~~~~e~~~L~~~v~~~~~~~~~~~~ 60 (359)
T PRK00591 4 MLDKLEALEERYEELEALLS-----DPEVISDQKRFRKLSKEYAELEPIVEAYREYKQAQED 60 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhc-----CCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554444432 2233345678888889999999999888887665543
No 224
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=57.30 E-value=1.9e+02 Score=27.90 Aligned_cols=73 Identities=11% Similarity=0.196 Sum_probs=46.4
Q ss_pred hHhHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy14403 86 QGKLSDYNLTMDKVNTQ--TNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMIDISMW 158 (168)
Q Consensus 86 QG~LADyNl~~Dk~~t~--~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~~~~~ 158 (168)
..++..|..-++++..+ -+|.+|..-..++..--...+.-.+.+=..+++.+....++..++.++++...--|
T Consensus 190 ~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap~~D~ 264 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDL 264 (555)
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccHhHH
Confidence 66778888888888887 66776665555554443444444444555566677777777777777766554433
No 225
>PRK10698 phage shock protein PspA; Provisional
Probab=56.92 E-value=1e+02 Score=25.85 Aligned_cols=56 Identities=11% Similarity=0.107 Sum_probs=27.6
Q ss_pred HHHHHHHHhhcCCCHH-HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 91 DYNLTMDKVNTQTNIA-DIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEK 149 (168)
Q Consensus 91 DyNl~~Dk~~t~~d~~-~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~ 149 (168)
..|-++|++- ||+ -|...+.++...-...+..+-.+...++..+.++..++..+.+
T Consensus 14 ~in~~ldkaE---DP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~ 70 (222)
T PRK10698 14 NINALLEKAE---DPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVE 70 (222)
T ss_pred HHHHHHHhhc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555554 454 3333444555555555555555555555555555555544443
No 226
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=56.52 E-value=64 Score=24.07 Aligned_cols=57 Identities=18% Similarity=0.345 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--hHhHHHHHHHHHHhhc
Q psy14403 34 RYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTEL--QGKLSDYNLTMDKVNT 101 (168)
Q Consensus 34 sYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~L--QG~LADyNl~~Dk~~t 101 (168)
.+|...|+++ ..-..++..+.+.+.. .++|...+..++..| ++.+++..+.+..++.
T Consensus 21 ~~~~~~l~~~-~a~~~~~~~l~~~~~~----------~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G 79 (106)
T PF10805_consen 21 GIFWLWLRRT-YAKREDIEKLEERLDE----------HDRRLQALETKLEHLPTRDDVHDLQLELAELRG 79 (106)
T ss_pred HHHHHHHHHh-hccHHHHHHHHHHHHH----------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 3566666553 4557778877766654 355555555555555 5555555555555443
No 227
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=56.49 E-value=52 Score=23.91 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=7.0
Q ss_pred HHHHHHHHHHhHhHH
Q psy14403 76 KEMATELTELQGKLS 90 (168)
Q Consensus 76 e~La~EI~~LQG~LA 90 (168)
.+|-+||..||.+|.
T Consensus 11 ~~LeqeV~~Lq~~L~ 25 (88)
T PF14389_consen 11 SALEQEVAELQKQLQ 25 (88)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 228
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=56.31 E-value=82 Score=23.50 Aligned_cols=56 Identities=18% Similarity=0.324 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHH
Q psy14403 74 RVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQ 129 (168)
Q Consensus 74 rae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~i 129 (168)
+.+.++..+.....+|...-.-++.+-+..|+..|+....+++-.-.....+++.|
T Consensus 36 ~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 36 DIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44445555555566666666666666666666666666666655555555555443
No 229
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=56.24 E-value=1.3e+02 Score=25.76 Aligned_cols=29 Identities=17% Similarity=0.523 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHh
Q psy14403 71 YDKRVKEMATELTELQGKLSDYNLTMDKV 99 (168)
Q Consensus 71 yekrae~La~EI~~LQG~LADyNl~~Dk~ 99 (168)
|..+...+..+++.|+.++...+..+++.
T Consensus 133 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 161 (301)
T PF14362_consen 133 FDAQIARLDAEIAALQAEIDQLEKEIDRA 161 (301)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555544444443
No 230
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=56.22 E-value=2.2e+02 Score=28.33 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHh
Q psy14403 67 TFLLYDKRVKEMATELTELQGKLSDYNLTMDKV 99 (168)
Q Consensus 67 ~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~ 99 (168)
++..+++|+..|..+......+|+++.--.+.+
T Consensus 559 ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l 591 (717)
T PF10168_consen 559 AREEIQRRVKLLKQQKEQQLKELQELQEERKSL 591 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554444444444433333
No 231
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=56.10 E-value=14 Score=27.62 Aligned_cols=44 Identities=23% Similarity=0.368 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhH
Q psy14403 46 DLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKL 89 (168)
Q Consensus 46 El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~L 89 (168)
...+++..|++++.......+.+..+.+..+.+..++..+...|
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l 46 (144)
T PF04350_consen 3 TLQAQIQQLQQELAQLKEKVANLEELKKQLEQLEQQLEELLKKL 46 (144)
T ss_dssp ---------HHHHHHTGGG-SSHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC
Confidence 45667777777777777777777777777777777776666554
No 232
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=55.87 E-value=1e+02 Score=24.46 Aligned_cols=118 Identities=19% Similarity=0.242 Sum_probs=66.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcC-----CCHHH
Q psy14403 33 KRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQ-----TNIAD 107 (168)
Q Consensus 33 ksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~-----~d~~~ 107 (168)
+..-++-+|.+..-+...+.++..++...+.=...+.. -.++.|.-|...|..++..=|.=+-++... .-...
T Consensus 4 k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~--iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h 81 (177)
T PF13870_consen 4 KRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHL--IDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTH 81 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778888888888888888888776664444321 123334444444444443333333333221 11334
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14403 108 IEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDM 152 (168)
Q Consensus 108 i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~ 152 (168)
+......+...+......+.............+..+..+-.....
T Consensus 82 ~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~ 126 (177)
T PF13870_consen 82 VKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRK 126 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666666666666666666666655544443
No 233
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=55.80 E-value=1.9e+02 Score=27.43 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIEL-SAKEHATFLLYDKRVKEMATELTELQGKLSDY 92 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~-~~~e~s~~~~yekrae~La~EI~~LQG~LADy 92 (168)
|+.+|.+|..+|.+++.++-. ++..-..|...-.+++.|...++.|..+++|.
T Consensus 12 l~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~ 65 (593)
T PF06248_consen 12 LRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDL 65 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 677777777778887777764 45556667777788888888888877777554
No 234
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=55.71 E-value=1.2e+02 Score=25.14 Aligned_cols=47 Identities=17% Similarity=0.379 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh
Q psy14403 39 LLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGK 88 (168)
Q Consensus 39 lLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~ 88 (168)
.|+.-+.++...+.+.+..+ .+--+....++++++.+...+.+++.+
T Consensus 28 ~l~q~irem~~~l~~ar~~l---A~~~a~~k~~e~~~~~~~~~~~~~~~~ 74 (219)
T TIGR02977 28 MIRLIIQEMEDTLVEVRTTS---ARTIADKKELERRVSRLEAQVADWQEK 74 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666555543 333444555666666666666666544
No 235
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=55.18 E-value=1.4e+02 Score=25.84 Aligned_cols=84 Identities=21% Similarity=0.202 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHhhcCC------CHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 74 RVKEMATELTELQGKLSDYNLTMDKVNTQT------NIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEI 147 (168)
Q Consensus 74 rae~La~EI~~LQG~LADyNl~~Dk~~t~~------d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~ei 147 (168)
..+.+..|+...+..-..|..+++++..+. .+.-+.+++.-++.--.-.+.-++.|=...+..+....+.+..+
T Consensus 10 t~~~i~~eL~~~~~l~~~yta~l~~~~~~~~~~~~~~~~~lke~L~n~RQ~e~fLr~ll~dl~~~~~~V~~l~~~~~~~l 89 (281)
T PF12018_consen 10 TTEHIDTELEEAQELCYRYTAVLEKQSQSPQMESELPPELLKEELYNRRQYEIFLRILLSDLITCAQRVEELIKRFEAQL 89 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788889999999999999999996421 12335666666666666677888888888888999999999999
Q ss_pred HHHhhhhhhh
Q psy14403 148 EKLDMIDISM 157 (168)
Q Consensus 148 e~~~~~~~~~ 157 (168)
++++..+.++
T Consensus 90 ~~L~~tv~~r 99 (281)
T PF12018_consen 90 EKLKETVKSR 99 (281)
T ss_pred HHHHHHHhcc
Confidence 9999887653
No 236
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=55.09 E-value=2.3e+02 Score=28.19 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHH
Q psy14403 69 LLYDKRVKEMATELTELQGKLSDYN 93 (168)
Q Consensus 69 ~~yekrae~La~EI~~LQG~LADyN 93 (168)
..++++.+.|..|+++|+..|--+-
T Consensus 425 ~~~~~~ve~l~~e~~~L~~~~ee~k 449 (652)
T COG2433 425 KKLEETVERLEEENSELKRELEELK 449 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544433
No 237
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=55.08 E-value=21 Score=28.23 Aligned_cols=73 Identities=22% Similarity=0.315 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCH-----HHHHHHHHHHHHhcH
Q psy14403 46 DLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNI-----ADIEEEYLELRAAND 120 (168)
Q Consensus 46 El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~-----~~i~~e~~~Lk~~N~ 120 (168)
.+.+|..+|.+=...+-+....-. ....-++.+|.++|+.|..|=.++.++...++. ..++.++.++...|.
T Consensus 49 ~vVsEL~~Ls~LK~~y~~~~~~~~---~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~ 125 (131)
T PF04859_consen 49 AVVSELRRLSELKRRYRKKQSDPS---PQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANK 125 (131)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCC---ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666554444443333322 344568899999999999999999998775543 333444444444444
Q ss_pred H
Q psy14403 121 I 121 (168)
Q Consensus 121 ~ 121 (168)
.
T Consensus 126 ~ 126 (131)
T PF04859_consen 126 S 126 (131)
T ss_pred H
Confidence 3
No 238
>KOG0612|consensus
Probab=54.93 E-value=3e+02 Score=29.55 Aligned_cols=55 Identities=16% Similarity=0.142 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMD 97 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~D 97 (168)
.+.+.+.+.+++..+.++++..++.++....-..++. +.-+.|.....|++.-.+
T Consensus 506 ~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~---~~rk~le~~~~d~~~e~~ 560 (1317)
T KOG0612|consen 506 EEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVN---SLRKQLEEAELDMRAESE 560 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHhhhhhhhhHH
Confidence 4445555555555555555555444444333222222 233344444555554444
No 239
>KOG0963|consensus
Probab=54.89 E-value=2.2e+02 Score=28.11 Aligned_cols=61 Identities=21% Similarity=0.272 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----------------------HHHHHHHHHHHHHHhHhHHHHHHHH
Q psy14403 39 LLQLKIRDLTNEITRLKRQIELSAKEHATFLLY----------------------DKRVKEMATELTELQGKLSDYNLTM 96 (168)
Q Consensus 39 lLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~y----------------------ekrae~La~EI~~LQG~LADyNl~~ 96 (168)
-+..++.++..=|..|+.-++....+...+-++ ++|+..|..|+..|.++|+--|--.
T Consensus 193 ~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~ 272 (629)
T KOG0963|consen 193 NLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSK 272 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 345556666666666666666666655555555 4566667777777777777666655
Q ss_pred HHh
Q psy14403 97 DKV 99 (168)
Q Consensus 97 Dk~ 99 (168)
+..
T Consensus 273 ~~~ 275 (629)
T KOG0963|consen 273 KLA 275 (629)
T ss_pred hhc
Confidence 554
No 240
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=54.88 E-value=1.7e+02 Score=26.65 Aligned_cols=53 Identities=15% Similarity=0.270 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHH
Q psy14403 74 RVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEE 128 (168)
Q Consensus 74 rae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~ 128 (168)
..+.|..|-+..+.+|+...-...-.+ ..+.+...+++++.++.++...++|+
T Consensus 267 qle~l~~eYr~~~~~ls~~~~~y~~~s--~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 267 QLEPLIQEYRSAQDELSEVQEKYKQAS--EGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443332222222 23455556666666666666555553
No 241
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=54.81 E-value=61 Score=21.60 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q psy14403 67 TFLLYDKRVKEMATELTELQGKLSDYNLTM 96 (168)
Q Consensus 67 ~~~~yekrae~La~EI~~LQG~LADyNl~~ 96 (168)
....++.++..|..+...|..++.++.--+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~ 56 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEI 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443333
No 242
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=54.42 E-value=1.8e+02 Score=26.73 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14403 39 LLQLKIRDLTNEITRLK 55 (168)
Q Consensus 39 lLR~Ki~El~~EI~kL~ 55 (168)
.++.++.++...+..|.
T Consensus 4 ~~~~~~~~~~~~~~~~~ 20 (364)
T TIGR00020 4 EVNNRIEDLTSRLDTVR 20 (364)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555666666555544
No 243
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=54.40 E-value=1.1e+02 Score=24.17 Aligned_cols=49 Identities=20% Similarity=0.395 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSD 91 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LAD 91 (168)
+..++.++..+...+..+|..+++..+. +|..++.+...+.+++..|..
T Consensus 19 ~e~~~K~le~~~~~~E~EI~sL~~K~~~---lE~eld~~~~~l~~~k~~lee 67 (143)
T PF12718_consen 19 LEAKVKQLEQENEQKEQEITSLQKKNQQ---LEEELDKLEEQLKEAKEKLEE 67 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444443332 333444444444444444433
No 244
>KOG0994|consensus
Probab=54.22 E-value=1.3e+02 Score=32.38 Aligned_cols=117 Identities=18% Similarity=0.246 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHh-h--------------cCCCHHHH
Q psy14403 44 IRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKV-N--------------TQTNIADI 108 (168)
Q Consensus 44 i~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~-~--------------t~~d~~~i 108 (168)
+.+|..-..+|-.-...+.. ..+.-.|..+...+..-|.+.++-|.+-|....-+ . ..-++..+
T Consensus 1173 l~~L~~rt~rl~~~A~~l~~-tGv~gay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~ 1251 (1758)
T KOG0994|consen 1173 LQELALRTHRLINRAKELKQ-TGVLGAYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQE 1251 (1758)
T ss_pred HHHHHHHHHHHHHHHHHhhh-ccCchhhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34555555555544444433 33444666666666666666666554444322111 0 11234455
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q psy14403 109 EEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMIDISMWIDI 161 (168)
Q Consensus 109 ~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~~~~~~~~ 161 (168)
+..+.++..++.-..+.|+.|=.++..+-.-.++|+++.+.++.+++.--+|+
T Consensus 1252 E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~sdi~GA~~~ 1304 (1758)
T KOG0994|consen 1252 EETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIKESDILGAFNS 1304 (1758)
T ss_pred hhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhHHHH
Confidence 55566666666667777888888888888899999999999999998876665
No 245
>COG5244 NIP100 Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell division and chromosome partitioning]
Probab=54.10 E-value=62 Score=31.43 Aligned_cols=55 Identities=22% Similarity=0.349 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHhHhHHH
Q psy14403 37 EGLLQLKIRDLTNEITRLKRQIELSAKE-------HATFLLYDKRVKEMATELTELQGKLSD 91 (168)
Q Consensus 37 ~glLR~Ki~El~~EI~kL~~e~e~~~~e-------~s~~~~yekrae~La~EI~~LQG~LAD 91 (168)
-|+|-.+|.+++.|.++|+.|+-.+... ++-...+=++.-+|..+|+-||.+|--
T Consensus 224 N~~L~~~Id~ln~eLE~l~~Ql~~L~s~~~ieve~N~R~~~~L~KF~sle~~v~~L~~~~~Q 285 (669)
T COG5244 224 NGILDGVIDELNGELERLRRQLVSLMSSHGIEVEENSRLKATLEKFQSLELKVNTLQEELYQ 285 (669)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999998877653 455666667888999999999988754
No 246
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=54.06 E-value=1.9e+02 Score=28.13 Aligned_cols=52 Identities=21% Similarity=0.346 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHhHhHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKEHATFL-LYDKRVKEMATELTELQGKLSD 91 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e~s~~~-~yekrae~La~EI~~LQG~LAD 91 (168)
++.++..+.+|+.+++.+.+....+..... +.+....++..-+..|+++|++
T Consensus 344 ~~q~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~le~~l~~ 396 (656)
T PRK06975 344 LNRKVDRLDQELVQRQQANDAQTAELRVKTEQAQASVHQLDSQFAQLDGKLAD 396 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999998888877666665432 2333444444444444444444
No 247
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=54.00 E-value=1.2e+02 Score=26.73 Aligned_cols=60 Identities=20% Similarity=0.216 Sum_probs=27.0
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHh
Q psy14403 30 VQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKV 99 (168)
Q Consensus 30 V~DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~ 99 (168)
..|-.--.--++.|..|+..|=..|-++++.+ +-.++++...++.|+++++-.|-.++++
T Consensus 130 ~~d~ke~~ee~kekl~E~~~EkeeL~~eleel----------e~e~ee~~erlk~le~E~s~LeE~~~~l 189 (290)
T COG4026 130 YMDLKEDYEELKEKLEELQKEKEELLKELEEL----------EAEYEEVQERLKRLEVENSRLEEMLKKL 189 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33433333444555555555444444444332 2334444444555555554444444443
No 248
>PRK11546 zraP zinc resistance protein; Provisional
Probab=53.89 E-value=46 Score=26.76 Aligned_cols=23 Identities=17% Similarity=0.471 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHH
Q psy14403 72 DKRVKEMATELTELQGKLSDYNL 94 (168)
Q Consensus 72 ekrae~La~EI~~LQG~LADyNl 94 (168)
++++.+|++||.+|+++|.+-=+
T Consensus 88 ~~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 88 SSKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777775533
No 249
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=53.19 E-value=82 Score=23.98 Aligned_cols=56 Identities=23% Similarity=0.278 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHHHHHhHhHHHHHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKEHATFLLY--DKRVKEMATELTELQGKLSDYNLT 95 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~y--ekrae~La~EI~~LQG~LADyNl~ 95 (168)
|+.-+..|..++.+|..+++.....--.|..- ..+|..++++.+.++..+.-++..
T Consensus 6 Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~ 63 (171)
T PF03357_consen 6 LKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQ 63 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666665555544333222211 234444444444444444444433
No 250
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=53.17 E-value=78 Score=22.32 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh
Q psy14403 48 TNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGK 88 (168)
Q Consensus 48 ~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~ 88 (168)
..+...|+.++......-..+..--++++....|+..|.+.
T Consensus 4 ~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~ 44 (106)
T PF01920_consen 4 QNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDD 44 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 34444444444444444444444455666666666666665
No 251
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=53.15 E-value=1.6e+02 Score=25.83 Aligned_cols=79 Identities=11% Similarity=0.233 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHH------HHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc-----CCCHHHHHHHHHH
Q psy14403 46 DLTNEITRLKRQIELSAKEHATFLL------YDKRVKEMATELTELQGKLSDYNLTMDKVNT-----QTNIADIEEEYLE 114 (168)
Q Consensus 46 El~~EI~kL~~e~e~~~~e~s~~~~------yekrae~La~EI~~LQG~LADyNl~~Dk~~t-----~~d~~~i~~e~~~ 114 (168)
=+..++.+++.+++..+..=..|.. -+..+..+..-+.+|+.+|++...-+..+++ +-.+-.++.+...
T Consensus 174 fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~ 253 (362)
T TIGR01010 174 FAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKS 253 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHH
Confidence 4566666666666666554444432 3445666777788888888888877776654 2334456666666
Q ss_pred HHHhcHHHHH
Q psy14403 115 LRAANDIETR 124 (168)
Q Consensus 115 Lk~~N~~~~~ 124 (168)
|+.+-..+.+
T Consensus 254 l~~~i~~e~~ 263 (362)
T TIGR01010 254 LRKQIDEQRN 263 (362)
T ss_pred HHHHHHHHHH
Confidence 6666554443
No 252
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=53.11 E-value=67 Score=21.52 Aligned_cols=11 Identities=45% Similarity=0.691 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q psy14403 44 IRDLTNEITRL 54 (168)
Q Consensus 44 i~El~~EI~kL 54 (168)
+.+++++|..+
T Consensus 26 i~~l~~~i~~l 36 (80)
T PF04977_consen 26 IAELQKEIEEL 36 (80)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 253
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=53.01 E-value=35 Score=18.74 Aligned_cols=30 Identities=10% Similarity=0.160 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q psy14403 90 SDYNLTMDKVNTQTNIADIEEEYLELRAAN 119 (168)
Q Consensus 90 ADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N 119 (168)
..||.+++.+....+++....-+.+++.++
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~g 31 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQG 31 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 369999999999999999988888887754
No 254
>KOG0810|consensus
Probab=52.89 E-value=1.7e+02 Score=26.07 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy14403 41 QLKIRDLTNEITRLKRQIELSAKEHATFLL 70 (168)
Q Consensus 41 R~Ki~El~~EI~kL~~e~e~~~~e~s~~~~ 70 (168)
=.++.+|...|.+|....+.+.+.++..++
T Consensus 39 f~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~ 68 (297)
T KOG0810|consen 39 FEDVEEIRDDIEKLDEDVEKLQKLHSKSLH 68 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHhc
Confidence 358899999999999999988888755544
No 255
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=52.86 E-value=73 Score=21.88 Aligned_cols=48 Identities=13% Similarity=0.329 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHh
Q psy14403 42 LKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKV 99 (168)
Q Consensus 42 ~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~ 99 (168)
.||..|..+|..|+.+++.+..+-+ .+..+|...+++-+=-|.=+|..
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~----------~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVN----------ALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677777777777777666554433 33345555555555555544443
No 256
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=52.70 E-value=84 Score=23.20 Aligned_cols=17 Identities=29% Similarity=0.345 Sum_probs=7.5
Q ss_pred HHHHhcHHHHHHHHHHH
Q psy14403 114 ELRAANDIETRHLEEQF 130 (168)
Q Consensus 114 ~Lk~~N~~~~~~ld~iF 130 (168)
.|..+|++...+|-++.
T Consensus 44 ~LE~rnD~l~~~L~~LL 60 (83)
T PF03670_consen 44 HLEQRNDHLHAQLQELL 60 (83)
T ss_pred HHHHhhhHHHHHHHHHH
Confidence 34444444444444443
No 257
>KOG1655|consensus
Probab=52.61 E-value=1.5e+02 Score=25.46 Aligned_cols=63 Identities=11% Similarity=0.183 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q psy14403 69 LLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFT 131 (168)
Q Consensus 69 ~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~ 131 (168)
.+..+|...+..-|..|-.+|.-|+-=+-|.+.|-....|...+..+-.+-.--..+.|.+..
T Consensus 22 ~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~ 84 (218)
T KOG1655|consen 22 DSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQ 84 (218)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888888888888888888889999998888888877664444444444444433
No 258
>KOG0933|consensus
Probab=52.43 E-value=3.1e+02 Score=28.99 Aligned_cols=61 Identities=20% Similarity=0.360 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcC
Q psy14403 42 LKIRDLTNEITRLKRQIELS----AKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQ 102 (168)
Q Consensus 42 ~Ki~El~~EI~kL~~e~e~~----~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~ 102 (168)
.+.++++.||..++..++.. ++....|..++=..++|.+|++.++++|.-.+...+.+-+.
T Consensus 787 ~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e 851 (1174)
T KOG0933|consen 787 RRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSE 851 (1174)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777766666544 44455666666677778888888877777777776666543
No 259
>KOG1899|consensus
Probab=52.40 E-value=74 Score=31.87 Aligned_cols=47 Identities=19% Similarity=0.182 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy14403 39 LLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTEL 85 (168)
Q Consensus 39 lLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~L 85 (168)
-|-.+--+|++|++.|+=..-..++++..|-.-.+..+.|-+||..+
T Consensus 171 sLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn~~ 217 (861)
T KOG1899|consen 171 SLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVNQS 217 (861)
T ss_pred hHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHH
Confidence 34455567888888888888888877766555555555565555533
No 260
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=52.11 E-value=92 Score=22.85 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-----------HHHHHHHHHHHHHHHhHhH
Q psy14403 39 LLQLKIRDLTNEITRLKRQIELSAKEHATFLL-----------YDKRVKEMATELTELQGKL 89 (168)
Q Consensus 39 lLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~-----------yekrae~La~EI~~LQG~L 89 (168)
-|-+||....-.|.-|+-|++.+...+.++.. ++..++.|..|-...|..|
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerL 69 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667776666666666666666665555443 4455555555555555444
No 261
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=51.56 E-value=1.1e+02 Score=23.36 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14403 39 LLQLKIRDLTNEITRLKRQI 58 (168)
Q Consensus 39 lLR~Ki~El~~EI~kL~~e~ 58 (168)
.|+.-+..|++.+..|...+
T Consensus 17 ~l~~~~~~l~~~~~~l~~~~ 36 (140)
T PRK03947 17 ALQAQIEALQQQLEELQASI 36 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 262
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=51.50 E-value=59 Score=29.39 Aligned_cols=9 Identities=33% Similarity=0.486 Sum_probs=0.0
Q ss_pred hhhhHHHHH
Q psy14403 33 KRYYEGLLQ 41 (168)
Q Consensus 33 ksYy~glLR 41 (168)
|+||+..+-
T Consensus 42 ~~~~~~~~E 50 (370)
T PF02994_consen 42 KSYLIMMLE 50 (370)
T ss_dssp ---------
T ss_pred chHHHHHHH
Confidence 588887764
No 263
>PTZ00464 SNF-7-like protein; Provisional
Probab=51.32 E-value=1.5e+02 Score=25.01 Aligned_cols=117 Identities=13% Similarity=0.170 Sum_probs=63.6
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------h-----HHHHHHHHHHHHHHHHHHHhHh
Q psy14403 28 RQVQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEH--------------A-----TFLLYDKRVKEMATELTELQGK 88 (168)
Q Consensus 28 RQV~DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~--------------s-----~~~~yekrae~La~EI~~LQG~ 88 (168)
-...|.. .-||.+...|..-|.+|..|+....+-- + ....||+..+.+..-.-.|+..
T Consensus 14 ~t~~d~~---~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~ 90 (211)
T PTZ00464 14 PTLEDAS---KRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQL 90 (211)
T ss_pred CCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455655 7788888888888877777766553111 1 1122344333333333333322
Q ss_pred H----------------HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHH---------HHHHHHHHHHHH
Q psy14403 89 L----------------SDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFT---------ERSKKQHQLHEL 143 (168)
Q Consensus 89 L----------------ADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~---------eR~~~E~~i~~l 143 (168)
+ .-=|.++-+++.+++++.|.+-..++.+.-+.. ++|.++.. .=-+.|.++..|
T Consensus 91 ~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~-~EI~e~Ls~~~~~~~~~DEdELe~ELe~L 169 (211)
T PTZ00464 91 QFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDT-QEIQEIMGRAYDVPDDIDEDEMLGELDAL 169 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 2 222445556677777777776665555554433 23333332 345677788888
Q ss_pred HHHHH
Q psy14403 144 EAEIE 148 (168)
Q Consensus 144 E~eie 148 (168)
|.+++
T Consensus 170 e~e~~ 174 (211)
T PTZ00464 170 DFDME 174 (211)
T ss_pred HHHHh
Confidence 88764
No 264
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.26 E-value=42 Score=29.30 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHH
Q psy14403 67 TFLLYDKRVKEMATELTELQGKLSDYN 93 (168)
Q Consensus 67 ~~~~yekrae~La~EI~~LQG~LADyN 93 (168)
...+.++++..|+.||++|+..+++|=
T Consensus 58 e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 58 ELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777788888888888887776
No 265
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=51.06 E-value=85 Score=22.13 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 105 IADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELE 144 (168)
Q Consensus 105 ~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE 144 (168)
..++-.+.+.+.+.-....+.+|.+|..-.+.-+.++.+.
T Consensus 49 ~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l~ 88 (90)
T PF06103_consen 49 INDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSELN 88 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 3455556666666666777888888888888777776653
No 266
>PHA02047 phage lambda Rz1-like protein
Probab=51.01 E-value=85 Score=24.01 Aligned_cols=34 Identities=12% Similarity=0.191 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcC
Q psy14403 69 LLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQ 102 (168)
Q Consensus 69 ~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~ 102 (168)
..|.++++.|+..+..++-+++-|---|++++..
T Consensus 30 g~~h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~k 63 (101)
T PHA02047 30 GIAHEEAKRQTARLEALEVRYATLQRHVQAVEAR 63 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999888888774
No 267
>KOG2077|consensus
Probab=50.81 E-value=1.3e+02 Score=29.97 Aligned_cols=85 Identities=21% Similarity=0.217 Sum_probs=62.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 64 EHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHEL 143 (168)
Q Consensus 64 e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~l 143 (168)
+-+.|+-+=+.++.|..|=..|=..=--. |+=..|+.+...+|.-.|+-.+-+++..-..+-.+|+.|+++
T Consensus 292 egAdllGMGrEVeNLilENsqLLetKNAL---------NiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~el 362 (832)
T KOG2077|consen 292 EGADLLGMGREVENLILENSQLLETKNAL---------NIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIREL 362 (832)
T ss_pred chhhhhcchHHHHHHHHhhHHHHhhhhHH---------HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777765543322222 334567788888888888888888888888888999999999
Q ss_pred HHHHHHHhhhhhhh
Q psy14403 144 EAEIEKLDMIDISM 157 (168)
Q Consensus 144 E~eie~~~~~~~~~ 157 (168)
|+||...+.-.+-.
T Consensus 363 EEElk~~k~ea~~a 376 (832)
T KOG2077|consen 363 EEELKKAKAEAEDA 376 (832)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998887655543
No 268
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=50.70 E-value=2.1e+02 Score=26.46 Aligned_cols=67 Identities=15% Similarity=0.219 Sum_probs=37.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc
Q psy14403 33 KRYYEGLLQLKIRDLTNEITRLKRQIELSAKE--------HATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNT 101 (168)
Q Consensus 33 ksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e--------~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t 101 (168)
-.||.|. .+.....+++..|+.++...... .+.+...+.....+..++..|+.++......+..+..
T Consensus 53 g~y~~~~--qq~~~~~~~~~~L~~ql~~~~~~~~~~~~~l~~~~~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ls~ 127 (390)
T PRK10920 53 GLYYHGK--QQAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQLDELQQKVATISG 127 (390)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3677774 44444555555555555443222 2233344444555555677777777777777777654
No 269
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=50.61 E-value=88 Score=22.15 Aligned_cols=66 Identities=20% Similarity=0.260 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 67 TFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAE 146 (168)
Q Consensus 67 ~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~e 146 (168)
.|..+|.++..+..-|.-||.++ +++..+...|...|+....+...+=.+|......|+.+=..
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~----------------eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMEN----------------EELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666666554 34555555555666666666666667777777777766555
Q ss_pred HH
Q psy14403 147 IE 148 (168)
Q Consensus 147 ie 148 (168)
|+
T Consensus 69 l~ 70 (72)
T PF06005_consen 69 LE 70 (72)
T ss_dssp HH
T ss_pred hh
Confidence 44
No 270
>PF13166 AAA_13: AAA domain
Probab=50.35 E-value=2.3e+02 Score=26.92 Aligned_cols=66 Identities=18% Similarity=0.407 Sum_probs=36.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHh
Q psy14403 34 RYYEGLLQLKIRDLTNEITRLKRQIE-------LSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKV 99 (168)
Q Consensus 34 sYy~glLR~Ki~El~~EI~kL~~e~e-------~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~ 99 (168)
+||-........+|...+..+...++ ........+..+....+++...+..|...|.....++.+-
T Consensus 276 ~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~L~~K 348 (712)
T PF13166_consen 276 KYFDEEYEKLIEELEKAIKKLEKAIENIIEQLESILSENDFYEEFEEDKEELKSAIEALKEELEELKKALEKK 348 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555544444455555555554433 2222223344555667777777777777777776666553
No 271
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=50.33 E-value=75 Score=27.25 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 38 GLLQLKIRDLTNEITRLKRQIELSA 62 (168)
Q Consensus 38 glLR~Ki~El~~EI~kL~~e~e~~~ 62 (168)
.-|...+..+..||.+|.-++|...
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~ 81 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQ 81 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3455556666666666655555443
No 272
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.21 E-value=3.1e+02 Score=28.34 Aligned_cols=34 Identities=26% Similarity=0.210 Sum_probs=21.8
Q ss_pred CcccccccccCCCCCCCCCCCCCCCcccccchhhh
Q psy14403 2 SDSDRLVTQQGLSGLRTGSALRGPGFRQVQDKRYY 36 (168)
Q Consensus 2 ~v~dRPvTQqGl~G~rt~~~~~Gp~~RQV~DksYy 36 (168)
+-.-|-||+-|-.|=+++.--+--. |-+.|+|-|
T Consensus 575 ~~~~~~vT~~GQ~~DPt~R~EKDDR-~kl~DRS~Y 608 (1104)
T COG4913 575 SALGPGVTILGQTGDPTTRWEKDDR-RKLGDRSTY 608 (1104)
T ss_pred hccCccceeccccCCCCccccccch-hhcCcccee
Confidence 3446789999977766632123344 778888766
No 273
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=50.14 E-value=1.9e+02 Score=25.81 Aligned_cols=18 Identities=11% Similarity=0.335 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14403 46 DLTNEITRLKRQIELSAK 63 (168)
Q Consensus 46 El~~EI~kL~~e~e~~~~ 63 (168)
++..++.....++..+.+
T Consensus 182 ~~~~~l~~ae~~l~~fr~ 199 (444)
T TIGR03017 182 ALREDLARAQSKLSAYQQ 199 (444)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 274
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.13 E-value=1.8e+02 Score=25.65 Aligned_cols=49 Identities=27% Similarity=0.374 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSD 91 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LAD 91 (168)
+......+.+||..|..+++...... ...+++...+-.|++.|+++++.
T Consensus 43 ~~~~~~~~q~ei~~L~~qi~~~~~k~---~~~~~~i~~~~~eik~l~~eI~~ 91 (265)
T COG3883 43 LQKEKKNIQNEIESLDNQIEEIQSKI---DELQKEIDQSKAEIKKLQKEIAE 91 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433222 22334444444444444444443
No 275
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=49.95 E-value=1.7e+02 Score=25.37 Aligned_cols=109 Identities=23% Similarity=0.278 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHH
Q psy14403 50 EITRLKRQIELSAKEHA----TFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRH 125 (168)
Q Consensus 50 EI~kL~~e~e~~~~e~s----~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ 125 (168)
|+++|+.+.+.+-+.=+ ....++|+.+.+.. .|+.+=-||+..-++...+ =..-+..+++++..- +-....
T Consensus 44 e~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~s---sL~eTtkdf~~~~~k~~~d-F~~~Lq~~Lk~V~td-e~k~~~ 118 (230)
T PF03904_consen 44 EIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKS---SLEETTKDFIDKTEKVHND-FQDILQDELKDVDTD-ELKNIA 118 (230)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhchH-HHHHHH
Confidence 55666655554333322 23344555555544 7777888888876666542 234455555555322 222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy14403 126 LEEQFTERSKKQHQLHELEAEIEKLDMIDISMWIDIST 163 (168)
Q Consensus 126 ld~iF~eR~~~E~~i~~lE~eie~~~~~~~~~~~~~~~ 163 (168)
-.++..-|...+.-++++-..+++-+.---++|-+|..
T Consensus 119 ~~ei~k~r~e~~~ml~evK~~~E~y~k~~k~~~~gi~a 156 (230)
T PF03904_consen 119 QNEIKKVREENKSMLQEVKQSHEKYQKRQKSMYKGIGA 156 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44577777777777777777777777766677666543
No 276
>PLN02678 seryl-tRNA synthetase
Probab=49.89 E-value=63 Score=30.25 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14403 45 RDLTNEITRLKRQIELSAK 63 (168)
Q Consensus 45 ~El~~EI~kL~~e~e~~~~ 63 (168)
+++..+++.|+.+.....+
T Consensus 43 r~l~~~~e~lr~erN~~sk 61 (448)
T PLN02678 43 RQRQFELDSLRKEFNKLNK 61 (448)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333
No 277
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.57 E-value=1e+02 Score=22.49 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 107 DIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAE 146 (168)
Q Consensus 107 ~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~e 146 (168)
-+..+..+||++|.....++-.+-..|-..+.+..++..+
T Consensus 22 LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 22 LLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778889999999988888888777777777776666544
No 278
>COG2262 HflX GTPases [General function prediction only]
Probab=49.31 E-value=43 Score=31.27 Aligned_cols=42 Identities=24% Similarity=0.395 Sum_probs=26.3
Q ss_pred CCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14403 21 ALRGPGFRQVQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEH 65 (168)
Q Consensus 21 ~~~Gp~~RQV~DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~ 65 (168)
|.+|||-.|+ -.+.=.+|.+|..|..|.+++.+.-+...+.+
T Consensus 146 G~rGpGE~~l---E~drR~ir~rI~~i~~eLe~v~~~R~~~R~~R 187 (411)
T COG2262 146 GFRGPGETQL---ETDRRRIRRRIAKLKRELENVEKAREPRRKKR 187 (411)
T ss_pred CCCCCCchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4678994443 34445677777777777777766666554443
No 279
>KOG3478|consensus
Probab=49.28 E-value=1.3e+02 Score=23.67 Aligned_cols=88 Identities=17% Similarity=0.266 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc---CCC------HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q psy14403 67 TFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNT---QTN------IADIEEEYLELRAANDIETRHLEEQFTERSKKQ 137 (168)
Q Consensus 67 ~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t---~~d------~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E 137 (168)
.|..+++..+..-.--+.|+-+|..-+.+.+-+.. +.. |--|.. +|.+.+.--.+.||=|-.+=+..|
T Consensus 13 kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkq---el~EAr~nV~kRlefI~~Eikr~e 89 (120)
T KOG3478|consen 13 KYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQ---ELEEARTNVGKRLEFISKEIKRLE 89 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHH---HHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34444444444444555666677766666655533 111 222333 455666777889999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhh
Q psy14403 138 HQLHELEAEIEKLDMIDISM 157 (168)
Q Consensus 138 ~~i~~lE~eie~~~~~~~~~ 157 (168)
.+++.++.+.+++...++-+
T Consensus 90 ~~i~d~q~e~~k~R~~v~k~ 109 (120)
T KOG3478|consen 90 NQIRDSQEEFEKQREAVIKL 109 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988776643
No 280
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=49.18 E-value=3.4e+02 Score=28.56 Aligned_cols=29 Identities=7% Similarity=0.045 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q psy14403 68 FLLYDKRVKEMATELTELQGKLSDYNLTM 96 (168)
Q Consensus 68 ~~~yekrae~La~EI~~LQG~LADyNl~~ 96 (168)
...+|++......++.++|.+|+.+|.-+
T Consensus 104 ~~~Leq~l~~~~~~L~~~q~~l~~~~~~~ 132 (1109)
T PRK10929 104 TDALEQEILQVSSQLLEKSRQAQQEQDRA 132 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 46778888888888999999999998777
No 281
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=48.77 E-value=88 Score=21.64 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHh
Q psy14403 45 RDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKV 99 (168)
Q Consensus 45 ~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~ 99 (168)
+.|.+||-.=+.=-+.+.+-.+++..++++..+...-.++|+.++...-.=++.+
T Consensus 4 saL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 4 SALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666554444455556667777777776666666666666665544444433
No 282
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=48.75 E-value=5.8 Score=38.61 Aligned_cols=86 Identities=26% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhh------cCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q psy14403 67 TFLLYDKRVKEMATELTELQGKLSDYNLTMDKVN------TQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQL 140 (168)
Q Consensus 67 ~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~------t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i 140 (168)
.|..+-+|.+++...++.|+.++..++....... ....+.+++.+..++...-.+..+..+.+-.+..+.++..
T Consensus 25 ~f~~ev~r~de~erkL~~le~~I~k~~~~~~~~~~~~~~~~~~~i~~le~~l~~le~~l~e~~~~~e~L~~~~~~L~E~~ 104 (759)
T PF01496_consen 25 KFVNEVRRCDEMERKLRFLEEEIKKLKIPLPEKNDKPDAPKPKEIDELEEELEELEEELRELNENLEKLEEELNELEEEK 104 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhhccccHHHHHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888888888887777321 1224556666666665555555555555555555555555
Q ss_pred HHHHHHHHHHhh
Q psy14403 141 HELEAEIEKLDM 152 (168)
Q Consensus 141 ~~lE~eie~~~~ 152 (168)
..+++.......
T Consensus 105 ~~L~~~~~~l~~ 116 (759)
T PF01496_consen 105 NVLEEEIEFLEE 116 (759)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHh
Confidence 555555444444
No 283
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=48.61 E-value=1.6e+02 Score=24.43 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy14403 129 QFTERSKKQHQLHELEAEIEKLDMIDISM 157 (168)
Q Consensus 129 iF~eR~~~E~~i~~lE~eie~~~~~~~~~ 157 (168)
.-.+++..+..+..++.++..+...+...
T Consensus 90 Al~~k~~~~~~~~~l~~~~~~~~~~v~~l 118 (219)
T TIGR02977 90 ALIEKQKAQELAEALERELAAVEETLAKL 118 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666666666655555443
No 284
>KOG0962|consensus
Probab=48.14 E-value=3.8e+02 Score=28.82 Aligned_cols=66 Identities=21% Similarity=0.233 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHH
Q psy14403 41 QLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIA 106 (168)
Q Consensus 41 R~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~ 106 (168)
+.+..++-.|++...+.++.+......+-.+...+..|..|-..+-.++-..=..+.++..++++.
T Consensus 236 ke~v~e~e~e~~~~~~~i~ei~~~~~el~k~~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~ 301 (1294)
T KOG0962|consen 236 KEEVSELENELGPIEAKIEEIEKSLKELEKLLKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEE 301 (1294)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchHH
Confidence 456778888889999999999988888888888888888888888888777777777777766643
No 285
>KOG0980|consensus
Probab=47.97 E-value=3.4e+02 Score=28.19 Aligned_cols=54 Identities=22% Similarity=0.241 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHh
Q psy14403 46 DLTNEITRLKRQIELSAKEHAT----FLLYDKRVKEMATELTELQGKLSDYNLTMDKV 99 (168)
Q Consensus 46 El~~EI~kL~~e~e~~~~e~s~----~~~yekrae~La~EI~~LQG~LADyNl~~Dk~ 99 (168)
+...++..|..+++.+.+.... +-...+..+.|..|+..|+++++-.-..++.+
T Consensus 463 ~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~ 520 (980)
T KOG0980|consen 463 DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNL 520 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 5566777778888887777665 45556677777777777777777666554443
No 286
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=47.92 E-value=2e+02 Score=27.78 Aligned_cols=50 Identities=24% Similarity=0.272 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcH
Q psy14403 69 LLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAAND 120 (168)
Q Consensus 69 ~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~ 120 (168)
...-...+....|+.++.+.|+-|+..+..++. |++.|+..-+-|..++.
T Consensus 33 ~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~--di~~IE~qn~~Lqvq~~ 82 (701)
T PF09763_consen 33 NSLMEYLDEALAECDELESWLSLYDVELNSVRD--DIEYIESQNNGLQVQSA 82 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhcCchhhHHH
Confidence 334444556667777777777777777766655 56666666555544433
No 287
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=47.23 E-value=92 Score=21.39 Aligned_cols=47 Identities=9% Similarity=0.377 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHH
Q psy14403 74 RVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQ 129 (168)
Q Consensus 74 rae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~i 129 (168)
+.+.|..+|..|..+. |.+.. |+..+..+....+....+.-+.||++
T Consensus 4 kid~Ls~dVq~L~~kv-------dqLs~--dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKV-------DQLSS--DVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH-------HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555555555544 34433 34445556666666666777777765
No 288
>KOG0971|consensus
Probab=46.99 E-value=3.7e+02 Score=28.34 Aligned_cols=56 Identities=13% Similarity=0.257 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHh
Q psy14403 41 QLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKV 99 (168)
Q Consensus 41 R~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~ 99 (168)
|--...-+.++.|+++++|....+.+.+ .+-.+.|..++..++.++||+---||..
T Consensus 388 RDlsA~ek~d~qK~~kelE~k~sE~~eL---~r~kE~Lsr~~d~aEs~iadlkEQVDAA 443 (1243)
T KOG0971|consen 388 RDLSASEKQDHQKLQKELEKKNSELEEL---RRQKERLSRELDQAESTIADLKEQVDAA 443 (1243)
T ss_pred HhcchHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334455678899999988877776654 5556777888888888888887766654
No 289
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=46.46 E-value=6.6 Score=38.04 Aligned_cols=83 Identities=18% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHH-------HHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHH
Q psy14403 56 RQIELSAKEHATFLLYDKRVKEMATE-------LTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEE 128 (168)
Q Consensus 56 ~e~e~~~~e~s~~~~yekrae~La~E-------I~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~ 128 (168)
.+++.+.+-=.....|.++++.|... +..|+.+|.-++.+-+. ++..+.+..+|+.+.......+|.
T Consensus 315 ~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~q------le~~k~qi~eLe~~l~~~~~~~~~ 388 (713)
T PF05622_consen 315 NEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQ------LEEYKKQIQELEQKLSEESRRADK 388 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444443 34555555555543222 233444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14403 129 QFTERSKKQHQLHELE 144 (168)
Q Consensus 129 iF~eR~~~E~~i~~lE 144 (168)
+=.+....++.+..++
T Consensus 389 l~~e~~~L~ek~~~l~ 404 (713)
T PF05622_consen 389 LEFENKQLEEKLEALE 404 (713)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444333
No 290
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=46.41 E-value=59 Score=31.13 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHH
Q psy14403 68 FLLYDKRVKEMATELTELQGKLSD 91 (168)
Q Consensus 68 ~~~yekrae~La~EI~~LQG~LAD 91 (168)
+..+|++.+.|..++.+|+.+|+|
T Consensus 565 ~~~~e~~i~~le~~~~~l~~~l~~ 588 (638)
T PRK10636 565 IARLEKEMEKLNAQLAQAEEKLGD 588 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344666677777777777777765
No 291
>PRK10869 recombination and repair protein; Provisional
Probab=46.39 E-value=2.7e+02 Score=26.51 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=24.3
Q ss_pred HHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHH
Q psy14403 81 ELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDI 121 (168)
Q Consensus 81 EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~ 121 (168)
++.+++.+|..+|.+.-|.. .++++|-+...+++.+-+.
T Consensus 297 ~l~~ie~Rl~~l~~L~rKyg--~~~~~~~~~~~~l~~eL~~ 335 (553)
T PRK10869 297 RLAELEQRLSKQISLARKHH--VSPEELPQHHQQLLEEQQQ 335 (553)
T ss_pred HHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHH
Confidence 35566677777777777766 3666666666666554433
No 292
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=45.89 E-value=2.6e+02 Score=26.31 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCH---HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 67 TFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNI---ADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLH 141 (168)
Q Consensus 67 ~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~---~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~ 141 (168)
.|..+..+.+....++.++-..|.+|.--+ ..|| ++|++....+..-..+-...++.+...+...+.++.
T Consensus 267 ~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l-----~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~ 339 (563)
T TIGR00634 267 SLRELAEQVGNALTEVEEATRELQNYLDEL-----EFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELD 339 (563)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443321 3444 333333333333333333345555555554444333
No 293
>KOG0249|consensus
Probab=45.63 E-value=2e+02 Score=29.32 Aligned_cols=39 Identities=28% Similarity=0.470 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy14403 76 KEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELR 116 (168)
Q Consensus 76 e~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk 116 (168)
+.|..|+..+.-+|+-.|..-|++. ++.++++.+...|+
T Consensus 219 n~L~~e~~s~kk~l~~~~~~k~rl~--~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 219 NRLEQELESVKKQLEEMRHDKDKLR--TDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHH
Confidence 3344444444444444444444333 24444444444444
No 294
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=45.60 E-value=1.6e+02 Score=23.86 Aligned_cols=109 Identities=17% Similarity=0.268 Sum_probs=58.7
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcC------C
Q psy14403 30 VQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQ------T 103 (168)
Q Consensus 30 V~DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~------~ 103 (168)
+.|+. -+|..-|+++...+.++...+-.. .+....++++++.+..++.+++.+.. .++.+-+.+ .
T Consensus 21 ~EDP~---~~l~q~ird~e~~l~~a~~~~a~~---~a~~~~le~~~~~~~~~~~~~~~~A~---~Al~~g~edLAr~al~ 91 (221)
T PF04012_consen 21 AEDPE---KMLEQAIRDMEEQLRKARQALARV---MANQKRLERKLDEAEEEAEKWEKQAE---LALAAGREDLAREALQ 91 (221)
T ss_pred hcCHH---HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHcCCHHHHHHHHH
Confidence 45655 677778888888877777665443 45566777777777777777776642 222222110 0
Q ss_pred CHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 104 NIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEI 147 (168)
Q Consensus 104 d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~ei 147 (168)
...+.+..+..++.+-+.....++.+=..-...+..+.+++.+.
T Consensus 92 ~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~ 135 (221)
T PF04012_consen 92 RKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKR 135 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12333444444444444444444444444444444444444433
No 295
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=45.57 E-value=1.8e+02 Score=24.31 Aligned_cols=48 Identities=17% Similarity=0.206 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14403 105 IADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDM 152 (168)
Q Consensus 105 ~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~ 152 (168)
...+-+-...+...|.+.++.+-.++.+=+.++.....|+.+-+++..
T Consensus 151 ~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~ 198 (206)
T PF14988_consen 151 KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQ 198 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667888999999999999999999999988888887666543
No 296
>PRK06798 fliD flagellar capping protein; Validated
Probab=45.56 E-value=68 Score=29.73 Aligned_cols=53 Identities=15% Similarity=0.288 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhHhH
Q psy14403 37 EGLLQLKIRDLTNEITRLKRQIELSAKE-HATFLLYDKRVKEMATELTELQGKL 89 (168)
Q Consensus 37 ~glLR~Ki~El~~EI~kL~~e~e~~~~e-~s~~~~yekrae~La~EI~~LQG~L 89 (168)
-|.|..++.-|...|.+|.++++.++.. ...+..|.+++-+|-.-+..||.|+
T Consensus 374 ~G~i~~r~~~l~~~i~~l~~~~~~~e~rl~~~e~~l~~qf~ale~~ms~lnsQ~ 427 (440)
T PRK06798 374 EGIIGERSKSIDNRVSKLDLKITDIDTQNKQKQDNIVDKYQKLESTLAALDSQL 427 (440)
T ss_pred CceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788888888888888888877753 3444556666666666666666655
No 297
>KOG0288|consensus
Probab=45.51 E-value=1.7e+02 Score=27.76 Aligned_cols=54 Identities=19% Similarity=0.193 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q psy14403 41 QLKIRDLTNEITRLKRQIEL----SAKEHATFLLYDKRVKEMATELTELQGKLSDYNL 94 (168)
Q Consensus 41 R~Ki~El~~EI~kL~~e~e~----~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl 94 (168)
-++.-.++.|+.-..+.-.. .....+.|.++-..+-....|+.+||.++.+.|.
T Consensus 12 dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e 69 (459)
T KOG0288|consen 12 DQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNE 69 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455554444333322 2334455666666666666777777777776664
No 298
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=45.45 E-value=44 Score=24.28 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14403 126 LEEQFTERSKKQHQLHELEAEIEKLDMI 153 (168)
Q Consensus 126 ld~iF~eR~~~E~~i~~lE~eie~~~~~ 153 (168)
|++|=.+..+++.+|+++|+++++..+-
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5777788888899999999999887764
No 299
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=45.36 E-value=2.2e+02 Score=25.20 Aligned_cols=55 Identities=27% Similarity=0.351 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc
Q psy14403 37 EGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNT 101 (168)
Q Consensus 37 ~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t 101 (168)
+..|..|-.++-.|..++.++ +..++|++..+..|...+++++.=-+.+-+|+-+
T Consensus 24 ~~~L~kk~~ell~e~k~~~k~----------~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~ 78 (309)
T PF09728_consen 24 LEALCKKYAELLEEMKRLQKQ----------LKKLQKKQEQLQKEKDQLQSELSKAILAKSKLES 78 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666665554 4567789999999999999999988888888754
No 300
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=45.27 E-value=90 Score=26.01 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14403 38 GLLQLKIRDLTNEITRLKRQIELSAKE 64 (168)
Q Consensus 38 glLR~Ki~El~~EI~kL~~e~e~~~~e 64 (168)
|.|..+++-|..+|..+.++++..++.
T Consensus 189 G~i~~~~~~l~~~~~~~~~~i~~~~~r 215 (239)
T PF07195_consen 189 GSITSRIDSLNSQIKSLDKQIEDLEER 215 (239)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888888888888887754
No 301
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=45.09 E-value=2.2e+02 Score=25.06 Aligned_cols=121 Identities=17% Similarity=0.240 Sum_probs=73.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHH-----------hHhHHHHHHHHHHhhc
Q psy14403 34 RYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDK-RVKEMATELTEL-----------QGKLSDYNLTMDKVNT 101 (168)
Q Consensus 34 sYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yek-rae~La~EI~~L-----------QG~LADyNl~~Dk~~t 101 (168)
.=|..-.-+|++.|..+...|...+.....+=+.+.+|-- .|---+-.|..| |.+|-|.|.+.-....
T Consensus 73 qe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~ 152 (258)
T PF15397_consen 73 QEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELA 152 (258)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677788889999999999999999999988888853 233333233332 3444454444333322
Q ss_pred CCC------------------HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14403 102 QTN------------------IADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMID 154 (168)
Q Consensus 102 ~~d------------------~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~ 154 (168)
... ......-.......|....+.++.-=..-.+.++.|..|..+++++....
T Consensus 153 ~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~ 223 (258)
T PF15397_consen 153 SLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQA 223 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111 01111122233456777777777766677777778888888777776543
No 302
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=44.94 E-value=4.1e+02 Score=28.25 Aligned_cols=108 Identities=11% Similarity=0.107 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc---------CCCHHHHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNT---------QTNIADIEE 110 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t---------~~d~~~i~~ 110 (168)
++.-+.+.......+......+......+.....+++.+...+...+++++..-.-+..+.. +...++|..
T Consensus 849 ~~~aL~~y~~~l~~l~~~~~~L~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a 928 (1353)
T TIGR02680 849 VGLALKRFGDHLHTLEVAVRELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRA 928 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555555555555555554444433322222211 112455555
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 111 EYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEI 147 (168)
Q Consensus 111 e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~ei 147 (168)
.+.++..+-+...+.+..+=.++...+..+..++.++
T Consensus 929 ~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~ 965 (1353)
T TIGR02680 929 RLAETRAALASGGRELPRLAEALATAEEARGRAEEKR 965 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555444444444
No 303
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=44.55 E-value=1.7e+02 Score=23.77 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=19.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q psy14403 33 KRYYEGLLQLKIRDLTNEITRLK 55 (168)
Q Consensus 33 ksYy~glLR~Ki~El~~EI~kL~ 55 (168)
-.||-....+=......||.+|-
T Consensus 68 GkYWK~eFe~Y~~~a~~Em~KLi 90 (152)
T PF11500_consen 68 GKYWKEEFESYHEKAEKEMEKLI 90 (152)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 37999999888888999999884
No 304
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=44.51 E-value=2.2e+02 Score=25.00 Aligned_cols=55 Identities=18% Similarity=0.306 Sum_probs=30.2
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHhhcCCC---------HHHHHHHHHHHHHhcHHHHHHHHHHHH
Q psy14403 77 EMATELTELQGKLSDYNLTMDKVNTQTN---------IADIEEEYLELRAANDIETRHLEEQFT 131 (168)
Q Consensus 77 ~La~EI~~LQG~LADyNl~~Dk~~t~~d---------~~~i~~e~~~Lk~~N~~~~~~ld~iF~ 131 (168)
.|..++..|.+++...|-=|--++|=.| +..+...+..|+.....+...+++++.
T Consensus 85 ~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~ 148 (258)
T PF15397_consen 85 KLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQ 148 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333 566677777777777777666666653
No 305
>PF08838 DUF1811: Protein of unknown function (DUF1811); InterPro: IPR014938 This entry consists uncharacterised bacterial proteins. Some of the proteins are annotated as being transcriptional regulators (see Q4MQL7 from SWISSPROT, Q65MA2 from SWISSPROT). The structure of one of the proteins has revealed a beta-barrel like structure with helix-turn-helix like motif. ; PDB: 2YXY_A 1SF9_A.
Probab=44.43 E-value=53 Score=25.16 Aligned_cols=33 Identities=21% Similarity=0.456 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHH
Q psy14403 44 IRDLTNEITRLKRQIELSAKEH--ATFLLYDKRVK 76 (168)
Q Consensus 44 i~El~~EI~kL~~e~e~~~~e~--s~~~~yekrae 76 (168)
..||..||.+|+++..+.++.- +.|.-|++|+-
T Consensus 9 ~~EL~~Ei~~L~ekarKAEq~G~~nE~aV~erK~~ 43 (102)
T PF08838_consen 9 EEELRQEIARLKEKARKAEQLGIVNEYAVYERKII 43 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 3589999999999998887763 67888888763
No 306
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=44.41 E-value=35 Score=24.53 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14403 124 RHLEEQFTERSKKQHQLHELEAEIEKLDM 152 (168)
Q Consensus 124 ~~ld~iF~eR~~~E~~i~~lE~eie~~~~ 152 (168)
+.|-++-..|+.+|..+..||.+|-....
T Consensus 2 ~~L~~l~~~k~~Le~~L~~lE~qIy~~Et 30 (80)
T PF09340_consen 2 KELKELLQKKKKLEKDLAALEKQIYDKET 30 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999977543
No 307
>PRK15396 murein lipoprotein; Provisional
Probab=44.23 E-value=1.1e+02 Score=22.23 Aligned_cols=19 Identities=11% Similarity=0.191 Sum_probs=7.7
Q ss_pred HHHHHHHhcHHHHHHHHHH
Q psy14403 111 EYLELRAANDIETRHLEEQ 129 (168)
Q Consensus 111 e~~~Lk~~N~~~~~~ld~i 129 (168)
+...-++...|.-+.||++
T Consensus 54 ~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 54 DVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444443
No 308
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=44.02 E-value=41 Score=27.63 Aligned_cols=42 Identities=19% Similarity=0.372 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 105 IADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKL 150 (168)
Q Consensus 105 ~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~ 150 (168)
.+|++..|+..-++|.-+..+||+ |..+..+++.|..|+..+
T Consensus 2 LeD~EsklN~AIERnalLE~ELdE----KE~L~~~~QRLkDE~RDL 43 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELDE----KENLREEVQRLKDELRDL 43 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCH----------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 578899999999999998888854 444444444444444443
No 309
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=44.01 E-value=3.1e+02 Score=26.64 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHhHhHHH
Q psy14403 75 VKEMATELTELQGKLSD 91 (168)
Q Consensus 75 ae~La~EI~~LQG~LAD 91 (168)
.+.+..|...|..++++
T Consensus 201 ~e~l~~E~~~L~~q~~e 217 (546)
T PF07888_consen 201 SEELKEERESLKEQLAE 217 (546)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 310
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=43.84 E-value=2e+02 Score=24.28 Aligned_cols=41 Identities=17% Similarity=0.155 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHH
Q psy14403 50 EITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLS 90 (168)
Q Consensus 50 EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LA 90 (168)
....+.+|.+.+.++.+.+......++++..|...|...|.
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556666666666666666666666677777777766543
No 311
>PRK11519 tyrosine kinase; Provisional
Probab=43.59 E-value=3.2e+02 Score=26.64 Aligned_cols=25 Identities=8% Similarity=0.262 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHH
Q psy14403 73 KRVKEMATELTELQGKLSDYNLTMD 97 (168)
Q Consensus 73 krae~La~EI~~LQG~LADyNl~~D 97 (168)
..++.+...+.+|+.+|++.+....
T Consensus 304 ~ea~~~l~~~~~l~~ql~~l~~~~~ 328 (719)
T PRK11519 304 LEAKAVLDSMVNIDAQLNELTFKEA 328 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555444333
No 312
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.37 E-value=97 Score=27.11 Aligned_cols=12 Identities=25% Similarity=0.207 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q psy14403 105 IADIEEEYLELR 116 (168)
Q Consensus 105 ~~~i~~e~~~Lk 116 (168)
+.+|+.-.++|.
T Consensus 138 ~~dl~~viNeL~ 149 (247)
T COG3879 138 DDDLQAVINELN 149 (247)
T ss_pred HHHHHHHHHHHH
Confidence 445444444443
No 313
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.31 E-value=2.5e+02 Score=25.33 Aligned_cols=45 Identities=9% Similarity=0.178 Sum_probs=30.6
Q ss_pred hhcCCCHHHHHHHHHHHHHhcH-------HHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 99 VNTQTNIADIEEEYLELRAAND-------IETRHLEEQFTERSKKQHQLHEL 143 (168)
Q Consensus 99 ~~t~~d~~~i~~e~~~Lk~~N~-------~~~~~ld~iF~eR~~~E~~i~~l 143 (168)
+..|+|.+..+..+...+..|. ....+-+..|.+++..|.+.+..
T Consensus 109 L~~~~d~~~te~~l~~y~~~n~~~I~~n~~~~~~e~~~~~~~~~~E~~~~~~ 160 (309)
T TIGR00570 109 LTNNIDLENTKKKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQ 160 (309)
T ss_pred hhcCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4567888888888777766554 45556677777777777654443
No 314
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=43.30 E-value=1.6e+02 Score=23.03 Aligned_cols=82 Identities=11% Similarity=0.206 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 67 TFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAAN-DIETRHLEEQFTERSKKQHQLHELEA 145 (168)
Q Consensus 67 ~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N-~~~~~~ld~iF~eR~~~E~~i~~lE~ 145 (168)
.+.........+..+++.|.+...-.+..++..... ...|+.....|+... ...+..+|.+.+.=-+.+..+.+.-.
T Consensus 28 ~~~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~--~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~ 105 (136)
T PF04871_consen 28 AESSLEQENKRLEAEEKELKEAEQAAEAELEELASE--VKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKE 105 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHH
Confidence 345555666666666666666666555555554442 355666566665333 45677777777777777777777666
Q ss_pred HHHHH
Q psy14403 146 EIEKL 150 (168)
Q Consensus 146 eie~~ 150 (168)
.+..+
T Consensus 106 rLk~L 110 (136)
T PF04871_consen 106 RLKEL 110 (136)
T ss_pred HHHHc
Confidence 65544
No 315
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=43.25 E-value=73 Score=26.44 Aligned_cols=44 Identities=25% Similarity=0.399 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhH
Q psy14403 45 RDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKL 89 (168)
Q Consensus 45 ~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~L 89 (168)
.+...+|.+|.+++..+.....-=.++-+++ +|-.||+.|+.+|
T Consensus 178 ~~~~~~i~~L~kei~~L~~~~~kEkq~nrkv-eln~elk~l~~eL 221 (221)
T PF14335_consen 178 IERLEQIEKLEKEIAKLKKKIKKEKQFNRKV-ELNTELKKLKKEL 221 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHHHHH-HHHHHHHHHHhcC
Confidence 3444555555555555555555445555555 3667777776654
No 316
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=43.22 E-value=3.2e+02 Score=26.59 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 38 GLLQLKIRDLTNEITRLKRQIELSA 62 (168)
Q Consensus 38 glLR~Ki~El~~EI~kL~~e~e~~~ 62 (168)
+.|+.++.+|..|+.+|..++..++
T Consensus 506 ~~L~~~~~~Le~e~~~L~~~~~~Le 530 (722)
T PF05557_consen 506 NELQKEIEELERENERLRQELEELE 530 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555444
No 317
>KOG0971|consensus
Probab=42.91 E-value=4.3e+02 Score=27.90 Aligned_cols=34 Identities=29% Similarity=0.270 Sum_probs=16.8
Q ss_pred cccchhhhHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q psy14403 29 QVQDKRYYEGLLQLKIRDLT---NEITRLKRQIELSA 62 (168)
Q Consensus 29 QV~DksYy~glLR~Ki~El~---~EI~kL~~e~e~~~ 62 (168)
||.|-+==+-.||.|-+|=. .|..|++-+.+..+
T Consensus 232 QvrdLtEkLetlR~kR~EDk~Kl~Elekmkiqleqlq 268 (1243)
T KOG0971|consen 232 QVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQ 268 (1243)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 56665555555555554422 34444444444433
No 318
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=42.73 E-value=1.6e+02 Score=22.79 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=8.2
Q ss_pred HHHHHHHHHhHhHHHHHHHH
Q psy14403 77 EMATELTELQGKLSDYNLTM 96 (168)
Q Consensus 77 ~La~EI~~LQG~LADyNl~~ 96 (168)
+++.-++.|++.|.|+=+..
T Consensus 13 el~n~La~Le~slE~~K~S~ 32 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTSQ 32 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhH
Confidence 33444444444444443333
No 319
>KOG2077|consensus
Probab=42.64 E-value=3.6e+02 Score=27.01 Aligned_cols=49 Identities=24% Similarity=0.403 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSD 91 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LAD 91 (168)
|=.|+.||+.|=.-|.-|++...+ .-..+|.+..+|..||+.+..++-|
T Consensus 327 LIakVDeL~~E~~vLrgElea~kq---ak~Klee~i~elEEElk~~k~ea~~ 375 (832)
T KOG2077|consen 327 LIAKVDELTCEKDVLRGELEAVKQ---AKLKLEEKIRELEEELKKAKAEAED 375 (832)
T ss_pred HHHHHHhhccHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335666666666666666655443 3456677777777777777766654
No 320
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=42.46 E-value=1.1e+02 Score=25.32 Aligned_cols=58 Identities=17% Similarity=0.182 Sum_probs=37.3
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH
Q psy14403 32 DKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDY 92 (168)
Q Consensus 32 DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADy 92 (168)
+-+-..+-|...+..-++| |+.||..+.++-..+...+.+++.|......|+.+|.++
T Consensus 106 eL~~tf~rL~~~Vd~~~~e---L~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F 163 (171)
T PF04799_consen 106 ELSSTFARLCQQVDQTKNE---LEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERF 163 (171)
T ss_dssp ----HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666666655 456777777777777777777777777777777777665
No 321
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=42.38 E-value=1e+02 Score=28.05 Aligned_cols=49 Identities=31% Similarity=0.392 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q psy14403 37 EGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLT 95 (168)
Q Consensus 37 ~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~ 95 (168)
..||+.|+.+|...|+.+.+|++...+ +.+=...--+=||.-|.|-|+=
T Consensus 177 v~LLqkk~~~l~~~l~~~~~eL~~~~k----------~L~faqekn~LlqslLddaniD 225 (323)
T PF08537_consen 177 VILLQKKIDELEERLNDLEKELEITKK----------DLKFAQEKNALLQSLLDDANID 225 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhhhccc
Confidence 468999999999999999999887443 2222222234467777777653
No 322
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=42.31 E-value=2.1e+02 Score=24.18 Aligned_cols=92 Identities=12% Similarity=0.230 Sum_probs=59.2
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHH
Q psy14403 30 VQDKRYYEGLLQLKIRDLTNEITRLKRQIELS-AKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADI 108 (168)
Q Consensus 30 V~DksYy~glLR~Ki~El~~EI~kL~~e~e~~-~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i 108 (168)
..|--.=..-||....+|-.++.+.+.+.+.. ....+......+.++.|. +=-+.+|.+..- .+...+.+...|
T Consensus 91 ~~~~dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL---~YK~~ql~~~~~--~~~~~~~~l~~v 165 (195)
T PF12761_consen 91 TEGTDWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLL---DYKERQLRELEE--GRSKSGKNLKSV 165 (195)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHH---HHHHHHHHhhhc--cCCCCCCCHHHH
Confidence 44555556779999999999999998888874 222222233333333332 122334444433 567788999999
Q ss_pred HHHHHHHHHhcHHHHHHH
Q psy14403 109 EEEYLELRAANDIETRHL 126 (168)
Q Consensus 109 ~~e~~~Lk~~N~~~~~~l 126 (168)
.+++.-++.|-+-....|
T Consensus 166 ~~Dl~~ie~QV~~Le~~L 183 (195)
T PF12761_consen 166 REDLDTIEEQVDGLESHL 183 (195)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999998888777666555
No 323
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=42.21 E-value=2e+02 Score=23.86 Aligned_cols=48 Identities=15% Similarity=0.263 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q psy14403 45 RDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLT 95 (168)
Q Consensus 45 ~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~ 95 (168)
.--..||-.|+..+- +....+...+++..+...|+-.++.+|.-+--+
T Consensus 64 ~~h~eEvr~Lr~~LR---~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L 111 (194)
T PF15619_consen 64 QRHNEEVRVLRERLR---KSQEQERELERKLKDKDEELLKTKDELKHLKKL 111 (194)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555554433 233444555555565555555555555544333
No 324
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=42.20 E-value=89 Score=22.32 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=9.7
Q ss_pred cccchhhhHHHHHHHHHHHHHH
Q psy14403 29 QVQDKRYYEGLLQLKIRDLTNE 50 (168)
Q Consensus 29 QV~DksYy~glLR~Ki~El~~E 50 (168)
..+|-.=..|-||.|+....+=
T Consensus 22 ~~kd~~~~~~~lk~Klq~ar~~ 43 (83)
T PF07544_consen 22 SSKDLDTATGSLKHKLQKARAA 43 (83)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 325
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=42.13 E-value=2.6e+02 Score=25.24 Aligned_cols=104 Identities=16% Similarity=0.201 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhh-----cCCCHHHHHHHHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVN-----TQTNIADIEEEYLE 114 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~-----t~~d~~~i~~e~~~ 114 (168)
|.+|..+|. -|..+++....++..|.. +|+.|...-..|+-+..+.+...+... ....-..+..-..+
T Consensus 4 L~SK~eAL~----IL~~eLe~cq~ErDqyKl---MAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~ 76 (319)
T PF09789_consen 4 LQSKSEALL----ILSQELEKCQSERDQYKL---MAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSE 76 (319)
T ss_pred hhhHHHHHH----HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHH
Confidence 566666653 477777777777666554 477777777777777766664443322 11123445555666
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 115 LRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKL 150 (168)
Q Consensus 115 Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~ 150 (168)
.+.+|.....+++.+=-.=.+....++-+-+.+.+.
T Consensus 77 sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 77 SREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 667777766666665443344444444444444443
No 326
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=41.70 E-value=2.3e+02 Score=24.44 Aligned_cols=55 Identities=20% Similarity=0.307 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHH
Q psy14403 67 TFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLE 127 (168)
Q Consensus 67 ~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld 127 (168)
....++-..+.+..+....++.|..|.. -|.+.++|..+|.+|...-+..+=.|.
T Consensus 179 Ir~~L~~~~~~~e~~~~~a~~~L~~Ye~------lg~~F~~ivreY~~l~~~ie~k~Wal~ 233 (238)
T PF14735_consen 179 IRDHLEEAIEELEQELQKARQRLESYEG------LGPEFEEIVREYTDLQQEIENKRWALE 233 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc------ccHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555556666666652 245566666666666665555444333
No 327
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=41.69 E-value=1e+02 Score=25.88 Aligned_cols=70 Identities=24% Similarity=0.399 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHH---HH------HHHHHHHHHHHH
Q psy14403 73 KRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQ---FT------ERSKKQHQLHEL 143 (168)
Q Consensus 73 krae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~i---F~------eR~~~E~~i~~l 143 (168)
.+.+....++..+ |.+. ..++..+||-.+|.++.++-...++..+++ .. +.-..|.+|..+
T Consensus 105 ~~~~~~l~~l~~~-g~v~---------~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v 174 (262)
T PF14257_consen 105 DKFDSFLDELSEL-GKVT---------SRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRV 174 (262)
T ss_pred HHHHHHHHHHhcc-Ccee---------eeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3455555555544 3332 334566666677766666555544444443 22 233555666677
Q ss_pred HHHHHHHhh
Q psy14403 144 EAEIEKLDM 152 (168)
Q Consensus 144 E~eie~~~~ 152 (168)
+.||+.+..
T Consensus 175 ~~eIe~~~~ 183 (262)
T PF14257_consen 175 RSEIEQLEG 183 (262)
T ss_pred HHHHHHHHH
Confidence 777766544
No 328
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=41.58 E-value=1.5e+02 Score=23.97 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDY 92 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADy 92 (168)
+++++..+..+|..-++|+..+.. -.+... -++++|...|.+|...|.+-
T Consensus 59 ~~~~v~~~~~~i~~k~~El~~L~~--~d~~kv-~~~E~L~d~v~eLkeel~~e 108 (146)
T PF05852_consen 59 IKNKVSSLETEISEKKKELSHLKK--FDRKKV-EDLEKLTDRVEELKEELEFE 108 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--cCHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554433 112222 26888889998888877764
No 329
>PF08928 DUF1910: Domain of unknown function (DUF1910); InterPro: IPR015024 This domain is found in hypothetical bacterial proteins.
Probab=41.51 E-value=1.4e+02 Score=21.90 Aligned_cols=74 Identities=16% Similarity=0.279 Sum_probs=45.3
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH--HHHHhhcCCCHHH
Q psy14403 30 VQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNL--TMDKVNTQTNIAD 107 (168)
Q Consensus 30 V~DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl--~~Dk~~t~~d~~~ 107 (168)
..|+.||...+. .....|.+..+++.....+...-.. |+ ..-..+++|++ ++-+-+.|.++++
T Consensus 4 l~~e~yf~~~i~----~~~e~i~~~~~~i~~~~~~~~~~~~---r~--------~~~~~~~~~~~~~l~~~YS~G~~i~~ 68 (117)
T PF08928_consen 4 LKDEEYFEKWIE----FYEESIEEFEEKIIELKEDEDNGIQ---RY--------NYYWSIFDYYLELLIAKYSAGDSIEE 68 (117)
T ss_pred cccHHHHHHHHH----HHHHHHHHHHHHHHhcccccccchh---hH--------HHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 468889876554 4445555555555544433322110 11 33345566655 7788899999999
Q ss_pred HHHHHHHHHHh
Q psy14403 108 IEEEYLELRAA 118 (168)
Q Consensus 108 i~~e~~~Lk~~ 118 (168)
|...+..+-..
T Consensus 69 l~~~~~~~l~~ 79 (117)
T PF08928_consen 69 LKPYYPNILDY 79 (117)
T ss_pred HHHHHHHHHHH
Confidence 99999876543
No 330
>KOG4593|consensus
Probab=41.43 E-value=85 Score=31.35 Aligned_cols=64 Identities=14% Similarity=0.253 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---HHHHHhHhHHHHHHHHHHh
Q psy14403 36 YEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMAT---ELTELQGKLSDYNLTMDKV 99 (168)
Q Consensus 36 y~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~---EI~~LQG~LADyNl~~Dk~ 99 (168)
+--..+.++.+|.+|+.+|+.=+...+.++.++...+.-+..+.. ||..|+.+.+..|....++
T Consensus 553 ~~~~~k~~~e~LqaE~~~lk~~l~~le~~~~~~~d~~i~~~s~~~~~~ev~qlk~ev~s~ekr~~rl 619 (716)
T KOG4593|consen 553 ARQIKKNRLEELQAELERLKERLTALEGDKMQFRDGEIAVHSLLAFSKEVAQLKKEVESAEKRNQRL 619 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHhhhhcchHHHHHHHHHHHHHHHHHHHH
No 331
>TIGR02420 dksA RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage.
Probab=41.41 E-value=1.5e+02 Score=22.06 Aligned_cols=72 Identities=6% Similarity=0.050 Sum_probs=38.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCC
Q psy14403 32 DKRYYEGLLQLKIRDLTNEITRLKRQIELSA---KEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQT 103 (168)
Q Consensus 32 DksYy~glLR~Ki~El~~EI~kL~~e~e~~~---~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~ 103 (168)
+..||...|..+..+|..+|......+.... .+.+...+-+....-.-.-+...+.+|....-++.++..|+
T Consensus 5 ~l~~~k~~L~~~~~~L~~~i~~~~~~~~~~~~~~~d~~D~a~~~~~~~~~~~~~~~~~~~l~~i~~AL~ri~~g~ 79 (110)
T TIGR02420 5 QLEHFRKILLRWKQELLEEADKTLEHLQEESENFPDPADRATQEEERALELRTRDRERKLIKKIDEALKRIEDGE 79 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4578889999999999888887776654321 11111111111111011112233556777777777776544
No 332
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=41.13 E-value=3.8e+02 Score=26.77 Aligned_cols=30 Identities=13% Similarity=0.327 Sum_probs=14.5
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy14403 28 RQVQDKRYYEGLLQLKIRDLTNEITRLKRQ 57 (168)
Q Consensus 28 RQV~DksYy~glLR~Ki~El~~EI~kL~~e 57 (168)
--|....-+++-....++++-..+++...+
T Consensus 497 ~ii~~A~~~~~~~~~~~~~li~~L~~~~~~ 526 (771)
T TIGR01069 497 FIIEQAKTFYGEFKEEINVLIEKLSALEKE 526 (771)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544444443333
No 333
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=40.57 E-value=2.3e+02 Score=23.99 Aligned_cols=51 Identities=18% Similarity=0.277 Sum_probs=35.9
Q ss_pred HHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q psy14403 84 ELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERS 134 (168)
Q Consensus 84 ~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~ 134 (168)
.+.|+..++=+.-=.+-|-.|+..+-.-...|..+-|+....+|.+|..+.
T Consensus 53 KafnE~MekYLe~lNlPSr~DiarvA~lvinlE~kvD~lee~fdd~~d~l~ 103 (189)
T TIGR02132 53 KALNDTTGNYLEQVNVPTKEDIANVASLVINLEEKVDLIEEFFDDKFDELE 103 (189)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444333333333455667788888888889999999999999999887
No 334
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=40.27 E-value=2.6e+02 Score=25.63 Aligned_cols=82 Identities=22% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHH------HHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHH----HHHHHHHHH
Q psy14403 69 LLYDKRVKEMATELTELQGKLSDYN------LTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQ----FTERSKKQH 138 (168)
Q Consensus 69 ~~yekrae~La~EI~~LQG~LADyN------l~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~i----F~eR~~~E~ 138 (168)
.++..+.+.+..++.+|+-.++|.| .+-..+..-.+...+...+.+++..........+-+ -.-+...+.
T Consensus 3 ~~~~~~~~~~~~~~~~le~~~~~p~~w~d~~~~~~~~k~~~~l~~~v~~~~~~~~~~~~~~~~~el~~~~D~e~~~~a~~ 82 (360)
T TIGR00019 3 PSLLEKLESLLERYEELEALLSDPEVISDQDKLRKLSKEYSQLEEIVDCYREYQQAQEDIKEAKEILEESDPEMREMAKE 82 (360)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q psy14403 139 QLHELEAEIEKL 150 (168)
Q Consensus 139 ~i~~lE~eie~~ 150 (168)
++..++.+++++
T Consensus 83 e~~~l~~~~~~~ 94 (360)
T TIGR00019 83 ELEELEEKIEEL 94 (360)
T ss_pred HHHHHHHHHHHH
No 335
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=40.15 E-value=1.5e+02 Score=29.43 Aligned_cols=31 Identities=23% Similarity=0.347 Sum_probs=16.2
Q ss_pred hhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy14403 33 KRYYEGLLQLKIRDLT-NEITRLKRQIELSAK 63 (168)
Q Consensus 33 ksYy~glLR~Ki~El~-~EI~kL~~e~e~~~~ 63 (168)
...+..+|..++.-|+ .|+.+|++|++.+.+
T Consensus 420 ~~qa~~Il~m~L~~Lt~le~~kl~~E~~~l~~ 451 (742)
T PRK05561 420 EIQAEAILELRLRRLAKLEEIEIRKEQDELRK 451 (742)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666555 455555554444333
No 336
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=40.11 E-value=55 Score=23.19 Aligned_cols=38 Identities=11% Similarity=0.184 Sum_probs=32.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q psy14403 94 LTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFT 131 (168)
Q Consensus 94 l~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~ 131 (168)
+++-....|+++++--.+..+...+..++....|.+|.
T Consensus 27 Li~h~~~knseleeWl~~e~E~~~q~~reEslaDDLFr 64 (65)
T PF08599_consen 27 LIAHHAGKNSELEEWLRQEMEEQRQQAREESLADDLFR 64 (65)
T ss_pred hhhccccccccHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 45555677899999999999999999999999999994
No 337
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=40.09 E-value=3.3e+02 Score=25.74 Aligned_cols=113 Identities=18% Similarity=0.258 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc-----CCC--HHHH
Q psy14403 36 YEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNT-----QTN--IADI 108 (168)
Q Consensus 36 y~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t-----~~d--~~~i 108 (168)
|...+...|..|..+++.++.= -.-....+...-++.-...|..+-..|=.+.-|.+-+|+-++. |+. +..+
T Consensus 174 ~~~~~~~sm~~i~~k~~~~k~~-~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qL 252 (426)
T smart00806 174 FFTEIKESIKDILEKIDKFKSS-SLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQL 252 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-hhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 4455556666666666666652 1122245677778888888888888888888888888887754 333 4445
Q ss_pred HHHHHHHHHhcHHHH------------------HHHHHHHHHHHHH---HHHHHHHHHHHHH
Q psy14403 109 EEEYLELRAANDIET------------------RHLEEQFTERSKK---QHQLHELEAEIEK 149 (168)
Q Consensus 109 ~~e~~~Lk~~N~~~~------------------~~ld~iF~eR~~~---E~~i~~lE~eie~ 149 (168)
+.-..++...+.... ++||.|-.|++-. |.-+..|+..++.
T Consensus 253 e~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQedL~~DL~dDL~k 314 (426)
T smart00806 253 ETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQEDLIADLKEDLEK 314 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554555555444443 7788888888753 4556666655554
No 338
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=40.01 E-value=1.3e+02 Score=21.13 Aligned_cols=59 Identities=15% Similarity=0.233 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHhHhHHHHHH
Q psy14403 36 YEGLLQLKIRDLTNEITRLKRQIELSAKEHAT-----FLLYDKRVKEMATELTELQGKLSDYNL 94 (168)
Q Consensus 36 y~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~-----~~~yekrae~La~EI~~LQG~LADyNl 94 (168)
-+..|+.+..+|...|.++..++.....-.+. ...|..+...+.+++..+...+...-.
T Consensus 22 ~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~ 85 (92)
T PF14712_consen 22 QLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKK 85 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888888888888777763332 234778887777777777776655433
No 339
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=39.81 E-value=42 Score=33.24 Aligned_cols=55 Identities=22% Similarity=0.366 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHH-------HHHHHhHhHH
Q psy14403 36 YEGLLQLKIRDLTNEITRLKRQIELS---AKEHATFLLYDKRVKEMAT-------ELTELQGKLS 90 (168)
Q Consensus 36 y~glLR~Ki~El~~EI~kL~~e~e~~---~~e~s~~~~yekrae~La~-------EI~~LQG~LA 90 (168)
|---.-.|+.++++||+||+++..+. =+..+.+..-|++...... |+=-|+|+|-
T Consensus 365 F~kRV~~~ia~~~AEIekmK~~Hak~m~k~k~~s~lk~AE~~LR~a~~~p~~~G~E~WRlEGrl~ 429 (669)
T PF08549_consen 365 FRKRVAKKIADMNAEIEKMKARHAKRMAKFKRNSLLKDAEKELRDAVEDPSETGPEIWRLEGRLD 429 (669)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCCccccCccceeeccccc
Confidence 77788899999999999999886543 2456777777777777665 5666777765
No 340
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=39.80 E-value=97 Score=20.10 Aligned_cols=17 Identities=24% Similarity=0.546 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14403 42 LKIRDLTNEITRLKRQI 58 (168)
Q Consensus 42 ~Ki~El~~EI~kL~~e~ 58 (168)
.++..|..|...|..++
T Consensus 32 ~~~~~L~~en~~L~~~i 48 (54)
T PF07716_consen 32 QEVQELEEENEQLRQEI 48 (54)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 341
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=39.77 E-value=3.7e+02 Score=26.25 Aligned_cols=110 Identities=20% Similarity=0.245 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHH-------HHHhhhHHHHHHHHHHHHHHH-------HHHHhHhHHHHHHHHHHhhcCCCHHHHHHH
Q psy14403 46 DLTNEITRLKRQIEL-------SAKEHATFLLYDKRVKEMATE-------LTELQGKLSDYNLTMDKVNTQTNIADIEEE 111 (168)
Q Consensus 46 El~~EI~kL~~e~e~-------~~~e~s~~~~yekrae~La~E-------I~~LQG~LADyNl~~Dk~~t~~d~~~i~~e 111 (168)
.|.++|.+|+.+.+. ..+=.+.-..++.|..+|... +..+.|+-..|=-++.++.+ ..+..+.+
T Consensus 268 ~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~--eie~kEee 345 (622)
T COG5185 268 IINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKS--EIELKEEE 345 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHH--HHHHHHHH
Confidence 445555555554443 334444455555566655543 34445555566566666655 45666777
Q ss_pred HHHHHHhcHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy14403 112 YLELRAANDIETRHL----------EEQFTERSKKQHQLHELEAEIEKLDMIDISM 157 (168)
Q Consensus 112 ~~~Lk~~N~~~~~~l----------d~iF~eR~~~E~~i~~lE~eie~~~~~~~~~ 157 (168)
+..|+++-+....+| +.+-.||-++-.++..+-.++.+++..|-+-
T Consensus 346 i~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~ 401 (622)
T COG5185 346 IKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSR 401 (622)
T ss_pred HHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhH
Confidence 777777766655544 3344455555556666666666666665543
No 342
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=39.63 E-value=2.2e+02 Score=26.37 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCC
Q psy14403 68 FLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQT 103 (168)
Q Consensus 68 ~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~ 103 (168)
-..|||+...-+.+|..||-+|.+|+.-+..+-.+.
T Consensus 50 kq~FekkNqksa~~i~~lqkkL~~y~~~l~ele~~~ 85 (395)
T PF10267_consen 50 KQVFEKKNQKSAQTIAQLQKKLEQYHKRLKELEQGG 85 (395)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 356899999999999999999999999999988776
No 343
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=39.47 E-value=75 Score=24.85 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=25.5
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy14403 117 AANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMIDIS 156 (168)
Q Consensus 117 ~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~~~ 156 (168)
++-.....++..+-++|+..|.+++.++.=++++..+++.
T Consensus 13 ~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD 52 (119)
T COG1382 13 AQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDED 52 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 3444556666666677777777777766666666666554
No 344
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=39.41 E-value=3.3e+02 Score=25.60 Aligned_cols=71 Identities=11% Similarity=0.167 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc---CCCHHHHHHHHHHH
Q psy14403 39 LLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNT---QTNIADIEEEYLEL 115 (168)
Q Consensus 39 lLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t---~~d~~~i~~e~~~L 115 (168)
.+..+-..|...++.+..++.....+ ..........+|-.|=.+||++|.-+-+... +.++.++.++...|
T Consensus 132 ~vl~~a~~l~~~~n~~~~~L~~~~~~------~~~~i~~~V~~iN~l~~~Ia~LN~~I~~~~~~~~g~~~ndL~DqRD~l 205 (547)
T PRK08147 132 ALIGKAEGLVNQFKTTDQYLRDQDKG------VNTAIGSSVDQINNYAKQIASLNDQITRLTGVGAGASPNDLLDQRDQL 205 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHH
Confidence 35566667777777777777766554 3355667777788888888888887777643 55566655554433
No 345
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=38.88 E-value=2.3e+02 Score=23.59 Aligned_cols=68 Identities=24% Similarity=0.337 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc---------CCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 71 YDKRVKEMATELTELQGKLSDYNLTMDKVNT---------QTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLH 141 (168)
Q Consensus 71 yekrae~La~EI~~LQG~LADyNl~~Dk~~t---------~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~ 141 (168)
+-.-.+.|...++.|+.+|+.....++.+|- +.....++..+.++-.+|- +.|..+.
T Consensus 134 W~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~--------------eie~a~~ 199 (221)
T PF05700_consen 134 WLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNL--------------EIEVACE 199 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--------------HHHHHHH
Confidence 3344456666666677777776666666654 2233345555555544444 4455555
Q ss_pred HHHHHHHHHhh
Q psy14403 142 ELEAEIEKLDM 152 (168)
Q Consensus 142 ~lE~eie~~~~ 152 (168)
.||.||.++++
T Consensus 200 ~Le~ei~~l~~ 210 (221)
T PF05700_consen 200 ELEQEIEQLKR 210 (221)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 346
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=38.69 E-value=1e+02 Score=19.94 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q psy14403 104 NIADIEEEYLELRAANDIETRHLEEQFTERSK 135 (168)
Q Consensus 104 d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~ 135 (168)
|.+.+...|..|++.|+...++.+.+=.+...
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~ 37 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAEVQE 37 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555554444433
No 347
>KOG0239|consensus
Probab=38.55 E-value=4e+02 Score=26.34 Aligned_cols=72 Identities=22% Similarity=0.323 Sum_probs=32.1
Q ss_pred HHHHHHhHhHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14403 80 TELTELQGKLSDYNLTMDKVNTQT--NIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDM 152 (168)
Q Consensus 80 ~EI~~LQG~LADyNl~~Dk~~t~~--d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~ 152 (168)
++|..|+.+|+..+.....++... -..++...+..+..+-..... ...-|.++...+...++|=++|.+++.
T Consensus 241 ~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~l~~~~~e~~~r~kL~N~i~eLkG 314 (670)
T KOG0239|consen 241 KKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLES-LEENLVEKKKEKEERRKLHNEILELKG 314 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334555555555444444333211 122333333334444222222 223333333444566777777777664
No 348
>PF14282 FlxA: FlxA-like protein
Probab=38.51 E-value=1.5e+02 Score=22.05 Aligned_cols=60 Identities=13% Similarity=0.303 Sum_probs=47.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q psy14403 34 RYYEGLLQLKIRDLTNEITRLKRQIE-LSAKEHATFLLYDKRVKEMATELTELQGKLSDYN 93 (168)
Q Consensus 34 sYy~glLR~Ki~El~~EI~kL~~e~e-~~~~e~s~~~~yekrae~La~EI~~LQG~LADyN 93 (168)
.=.+.-|..+|..|+.+|..|...-+ .-+.-......++.....|-..|..|+.+.+--+
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999998433 3444466777888999999999999998887543
No 349
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=38.18 E-value=92 Score=23.17 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14403 41 QLKIRDLTNEITRLKRQIELSAKEH 65 (168)
Q Consensus 41 R~Ki~El~~EI~kL~~e~e~~~~e~ 65 (168)
..++..++.|++.|+.+++.-..+.
T Consensus 55 ~~e~~~l~~E~e~L~~~l~~e~~Ek 79 (87)
T PF12709_consen 55 ENENKALKRENEQLKKKLDTEREEK 79 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 350
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=38.01 E-value=3.2e+02 Score=25.04 Aligned_cols=18 Identities=22% Similarity=0.494 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy14403 134 SKKQHQLHELEAEIEKLD 151 (168)
Q Consensus 134 ~~~E~~i~~lE~eie~~~ 151 (168)
...+.++..++.+++++.
T Consensus 95 ~~a~~e~~~l~~~l~~le 112 (367)
T PRK00578 95 AEAEAELKALEKKLAALE 112 (367)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555555443
No 351
>KOG1937|consensus
Probab=37.89 E-value=2.1e+02 Score=27.52 Aligned_cols=38 Identities=16% Similarity=0.325 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Q psy14403 49 NEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQG 87 (168)
Q Consensus 49 ~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG 87 (168)
.+-.+|.++++.+-++-+ ...|.+|.+++..-|+++..
T Consensus 366 el~~~Lrsele~lp~dv~-rk~ytqrikEi~gniRKq~~ 403 (521)
T KOG1937|consen 366 ELAEKLRSELEKLPDDVQ-RKVYTQRIKEIDGNIRKQEQ 403 (521)
T ss_pred HHHHHHHHHHhcCCchhH-HHHHHHHHHHHHhHHHHHHH
Confidence 334467777777777666 78899999998888877654
No 352
>KOG1850|consensus
Probab=37.82 E-value=3.3e+02 Score=25.19 Aligned_cols=93 Identities=19% Similarity=0.325 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHH---HHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHH
Q psy14403 38 GLLQLKIRDLTNEITRLKRQIELSAKEHATFLLY-DKRVKE---MATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYL 113 (168)
Q Consensus 38 glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~y-ekrae~---La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~ 113 (168)
-+.|+|..++-.|..|..++...-..- +-.-. ++|-++ +..=+++.|.+||--|.=.|+++. +-..+...+.
T Consensus 72 ~larsKLeelCRelQr~nk~~keE~~~--q~k~eEerRkea~~~fqvtL~diqktla~~~~~n~klre--~NieL~eKlk 147 (391)
T KOG1850|consen 72 ELARSKLEELCRELQRANKQTKEEACA--QMKKEEERRKEAVEQFQVTLKDIQKTLAEGRSKNDKLRE--DNIELSEKLK 147 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhhHHHHH--HHHHHHHHHH
Confidence 467899999999888887765432221 11111 222222 223455666666666666666654 3445666777
Q ss_pred HHHHhcHHHHHHHHHHHHHHH
Q psy14403 114 ELRAANDIETRHLEEQFTERS 134 (168)
Q Consensus 114 ~Lk~~N~~~~~~ld~iF~eR~ 134 (168)
+|-++-+...+.+|..|....
T Consensus 148 eL~eQy~~re~hidk~~e~ke 168 (391)
T KOG1850|consen 148 ELGEQYEEREKHIDKQIQKKE 168 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777775543
No 353
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=37.76 E-value=2.5e+02 Score=23.62 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14403 41 QLKIRDLTNEITRLKRQIEL 60 (168)
Q Consensus 41 R~Ki~El~~EI~kL~~e~e~ 60 (168)
..+|.-|..+|.+|++++..
T Consensus 111 ~~ei~~L~~kI~~L~~~in~ 130 (181)
T PF04645_consen 111 KKEIEILRLKISSLQKEINK 130 (181)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 34444444445555444443
No 354
>KOG1318|consensus
Probab=37.73 E-value=79 Score=29.57 Aligned_cols=62 Identities=13% Similarity=0.198 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHH
Q psy14403 51 ITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEY 112 (168)
Q Consensus 51 I~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~ 112 (168)
|.+|++..+....-..--..++..++.|+..|.+|+.+++-.++-++-.+....++.++...
T Consensus 282 Ir~Lqq~~q~~~E~~~rqk~le~~n~~L~~rieeLk~~~~~~~~~~~~~~~~~~~~~~e~~i 343 (411)
T KOG1318|consen 282 IRELQQTLQRARELENRQKKLESTNQELALRIEELKSEAGRHGLQVEPSKLTNSLEGSEQII 343 (411)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHhcCccccccccccchhhhhhh
Confidence 44455555555555555566667788888888888888888888887777766665555443
No 355
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=37.64 E-value=1.8e+02 Score=29.69 Aligned_cols=46 Identities=13% Similarity=0.143 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHh--hcCCCHHHHHHHHHHHH
Q psy14403 71 YDKRVKEMATELTELQGKLSDYNLTMDKV--NTQTNIADIEEEYLELR 116 (168)
Q Consensus 71 yekrae~La~EI~~LQG~LADyNl~~Dk~--~t~~d~~~i~~e~~~Lk 116 (168)
+++....|.+++..|+++++-+..-+.+- -..+.++.++.+-.+|.
T Consensus 927 ~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~ 974 (995)
T PTZ00419 927 LKKELAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKID 974 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHH
Confidence 34444555555555555555555544432 24677777777776665
No 356
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=37.54 E-value=1e+02 Score=22.85 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy14403 36 YEGLLQLKIRDLTNEITRLKRQIELSAKEHAT 67 (168)
Q Consensus 36 y~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~ 67 (168)
++|-+.=|..-+..||.+|.+|.+.+..+.++
T Consensus 17 i~~y~~~k~~ka~~~~~kL~~en~qlk~Ek~~ 48 (87)
T PF10883_consen 17 ILAYLWWKVKKAKKQNAKLQKENEQLKTEKAV 48 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777888888888887777666554
No 357
>PF14992 TMCO5: TMCO5 family
Probab=37.08 E-value=3e+02 Score=24.50 Aligned_cols=61 Identities=11% Similarity=0.183 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHH--HHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHH
Q psy14403 69 LLYDKRVKEMATELTELQGKLSD--YNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQ 129 (168)
Q Consensus 69 ~~yekrae~La~EI~~LQG~LAD--yNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~i 129 (168)
..+|+.++.+..-|.+||.++.- .|...++-+..+.+...++....+........+++..+
T Consensus 73 ~~LE~~ne~l~~~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kv 135 (280)
T PF14992_consen 73 AKLEKENEHLSKSVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKV 135 (280)
T ss_pred HHHhhhhHhhhhhhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888887531 33434555555555555555555544444444444444
No 358
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=36.98 E-value=2.5e+02 Score=23.40 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q psy14403 108 IEEEYLELRAANDIETRHLEEQFTERSK 135 (168)
Q Consensus 108 i~~e~~~Lk~~N~~~~~~ld~iF~eR~~ 135 (168)
++.....|.......++.+|.|=..|+.
T Consensus 141 Le~~~~~le~~l~~~k~~ie~vN~~RK~ 168 (221)
T PF05700_consen 141 LEAMLKRLEKELAKLKKEIEEVNRERKR 168 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444443
No 359
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=36.94 E-value=2.4e+02 Score=23.32 Aligned_cols=50 Identities=18% Similarity=0.095 Sum_probs=23.1
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q psy14403 110 EEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMIDISMWI 159 (168)
Q Consensus 110 ~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~~~~~~ 159 (168)
....+|+..--+.+.....+-..+.+.+.+|..++..++.+.....+.=.
T Consensus 131 ~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~ 180 (190)
T PF05266_consen 131 SEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAEL 180 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444555555555555555554444433
No 360
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=36.81 E-value=1.1e+02 Score=26.61 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14403 110 EEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMI 153 (168)
Q Consensus 110 ~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~ 153 (168)
..+..|++.|++.++++..+ +++.......++.|-++++.+
T Consensus 66 ~~~~~l~~EN~~Lr~e~~~l---~~~~~~~~~~l~~EN~rLr~L 106 (283)
T TIGR00219 66 KDVNNLEYENYKLRQELLKK---NQQLEILTQNLKQENVRLREL 106 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
No 361
>KOG4466|consensus
Probab=36.60 E-value=3.2e+02 Score=24.58 Aligned_cols=90 Identities=23% Similarity=0.398 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHH-hHhHHHHHHHHHHhhcCCC-------------HHHHHHHHH-HHHHhcHHHHHHHHHHHHHH-
Q psy14403 70 LYDKRVKEMATELTEL-QGKLSDYNLTMDKVNTQTN-------------IADIEEEYL-ELRAANDIETRHLEEQFTER- 133 (168)
Q Consensus 70 ~yekrae~La~EI~~L-QG~LADyNl~~Dk~~t~~d-------------~~~i~~e~~-~Lk~~N~~~~~~ld~iF~eR- 133 (168)
.|.-|.-+|..++.+| ||..--|---|+++....+ .+-++.+|. +++++-..-. ..=-+..++
T Consensus 39 ~yk~kLa~Lq~~Leel~~g~~~eYl~~~~~L~~~~kerl~~aely~e~~~e~v~~eYe~E~~aAk~e~E-~~~~lLke~l 117 (291)
T KOG4466|consen 39 MYKDKLAQLQAQLEELGQGTAPEYLKRVKKLDESRKERLRVAELYREYCVERVEREYECEIKAAKKEYE-SKKKLLKENL 117 (291)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4666666666666666 4666666666666655444 233444442 2222111111 111111111
Q ss_pred -HHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy14403 134 -SKKQHQLHELEAEIEKLDMIDISMWID 160 (168)
Q Consensus 134 -~~~E~~i~~lE~eie~~~~~~~~~~~~ 160 (168)
-..|+.+++||++=--+.=.-.|||++
T Consensus 118 ~seleeKkrkieeeR~smDlts~~~e~~ 145 (291)
T KOG4466|consen 118 ISELEEKKRKIEEERLSMDLTSDSMESK 145 (291)
T ss_pred HHHHHHHHHHHHHHHhhhhhcccccccc
Confidence 245667777777665555555667876
No 362
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=36.58 E-value=1.8e+02 Score=26.06 Aligned_cols=49 Identities=14% Similarity=0.216 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHh
Q psy14403 51 ITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKV 99 (168)
Q Consensus 51 I~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~ 99 (168)
+.||.-|+....+=...+..++++.+.|.+|++..+..|...--.++.+
T Consensus 93 l~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l 141 (355)
T PF09766_consen 93 LARLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSL 141 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 7899999999999999999999999999999999998888777666654
No 363
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=36.20 E-value=96 Score=26.32 Aligned_cols=68 Identities=19% Similarity=0.283 Sum_probs=33.5
Q ss_pred hhhhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhh
Q psy14403 33 KRYYEGLLQLKI----------RDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVN 100 (168)
Q Consensus 33 ksYy~glLR~Ki----------~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~ 100 (168)
..||.-+=-.+- ..|..+|+.++.++..+..++..+..+-.-+..||.=|..|-|+-.|.+-..|..-
T Consensus 106 e~YWk~lAE~RR~AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la~~ie~l~~~~~~~~e~~~~~~ 183 (200)
T PF07412_consen 106 ENYWKELAEERRKALEEALEENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQYLAEVIERLTGQELDNLESLDEQE 183 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC-------------S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccCcchhc
Confidence 479976643332 33444455555555556666666666667777777777777777776665555443
No 364
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=36.02 E-value=3.1e+02 Score=24.20 Aligned_cols=73 Identities=16% Similarity=0.267 Sum_probs=41.9
Q ss_pred HHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy14403 81 ELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMIDI 155 (168)
Q Consensus 81 EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~~ 155 (168)
-|+.++.++.+..-.++.+.+ |-..+...++.-+..-++.++.+..+=.-|=+-=++-.++|.|++++-..-.
T Consensus 170 ai~~~~~~~~~~~~~l~~l~~--de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~ 242 (267)
T PF10234_consen 170 AIKAVQQQLQQTQQQLNNLAS--DEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYV 242 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666555555544 4455555566666666666666666655555555566666666666544433
No 365
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=35.87 E-value=1.8e+02 Score=29.04 Aligned_cols=46 Identities=13% Similarity=0.231 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHH--hhcCCCHHHHHHHHHHHH
Q psy14403 71 YDKRVKEMATELTELQGKLSDYNLTMDK--VNTQTNIADIEEEYLELR 116 (168)
Q Consensus 71 yekrae~La~EI~~LQG~LADyNl~~Dk--~~t~~d~~~i~~e~~~Lk 116 (168)
+++..+.|.+++..||++|+.+..-+.. .-..+.++.++.+..+|.
T Consensus 809 ~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~ 856 (874)
T PRK05729 809 VEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLA 856 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHH
Confidence 4455555666666666666555554443 234666777777666665
No 366
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=35.79 E-value=2.1e+02 Score=27.42 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=28.0
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14403 114 ELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDM 152 (168)
Q Consensus 114 ~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~ 152 (168)
.....-+...+++..+-.++.+.++++++++.+++.+..
T Consensus 90 ~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~ 128 (646)
T PRK05771 90 DVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEP 128 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334445666777888888888888888888888776653
No 367
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=35.79 E-value=1.7e+02 Score=21.15 Aligned_cols=60 Identities=20% Similarity=0.310 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHh-hcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q psy14403 72 DKRVKEMATELTELQGKLSDYNLTMDKV-NTQTNIADIEEEYLELRAANDIETRHLEEQFT 131 (168)
Q Consensus 72 ekrae~La~EI~~LQG~LADyNl~~Dk~-~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~ 131 (168)
......+..++..|+.+---....+-++ ..|.+.+++..+...++.+-......++.+..
T Consensus 35 d~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~ 95 (108)
T PF02403_consen 35 DQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEE 95 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433332222222 33457777777777777665555554444433
No 368
>PRK01203 prefoldin subunit alpha; Provisional
Probab=35.78 E-value=2.2e+02 Score=22.49 Aligned_cols=33 Identities=12% Similarity=0.248 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHh
Q psy14403 67 TFLLYDKRVKEMATELTELQGKLSDYNLTMDKV 99 (168)
Q Consensus 67 ~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~ 99 (168)
+|..|+.-.+.|+.++..|+..+.+|.-.++-+
T Consensus 8 ~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L 40 (130)
T PRK01203 8 QLNYIESLISSVDSQIDSLNKTLSEVQQTISFL 40 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555554
No 369
>PRK05560 DNA gyrase subunit A; Validated
Probab=35.78 E-value=1.7e+02 Score=29.32 Aligned_cols=58 Identities=16% Similarity=0.221 Sum_probs=32.0
Q ss_pred hhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHHHhHhHH
Q psy14403 33 KRYYEGLLQLKIRDLT-NEITRLKRQIELSAKEHATFLLY----DKRVKEMATELTELQGKLS 90 (168)
Q Consensus 33 ksYy~glLR~Ki~El~-~EI~kL~~e~e~~~~e~s~~~~y----ekrae~La~EI~~LQG~LA 90 (168)
...|..+|..++.-|+ .|+.+|++|++.+.++-+.|..+ .+..+-+.+|+++++.+-+
T Consensus 413 ~~qa~~IL~m~L~~LT~~e~~kL~~E~~~l~~ei~~l~~iL~~~~~l~~~i~~EL~~ikkkfg 475 (805)
T PRK05560 413 EIQAQAILDMRLQRLTGLERDKIEDEYKELLALIADLKDILASPERLLEIIKEELLEIKEKFG 475 (805)
T ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Confidence 3366777777777777 46777766666555554444433 2233344444444444433
No 370
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=35.59 E-value=2.8e+02 Score=23.63 Aligned_cols=108 Identities=20% Similarity=0.242 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAAN 119 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N 119 (168)
|..++..+..|..+.+.++.....-...+..=-++++.-+.. |+-.-...-.....+.... ..-..+-..|....
T Consensus 10 le~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~---Le~k~~eaee~~~rL~~~~--~~~~eEk~~Le~e~ 84 (246)
T PF00769_consen 10 LEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEE---LEQKRQEAEEEKQRLEEEA--EMQEEEKEQLEQEL 84 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH--------------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 344455555555555554444433333222222233332322 3333333333333333321 12244455577777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14403 120 DIETRHLEEQFTERSKKQHQLHELEAEIEKLDM 152 (168)
Q Consensus 120 ~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~ 152 (168)
......+..+..++..++.+...+..++..-+.
T Consensus 85 ~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 85 REAEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888999999988888888776555
No 371
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=35.47 E-value=2e+02 Score=27.04 Aligned_cols=58 Identities=21% Similarity=0.278 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q psy14403 41 QLKIRDLTNEITRLKRQIEL-SAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDK 98 (168)
Q Consensus 41 R~Ki~El~~EI~kL~~e~e~-~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk 98 (168)
..+..+|+++.+.+.+++-. ..++...-..+-...+.+..+++++.-+|.+...-++.
T Consensus 42 ~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~ 100 (429)
T COG0172 42 LRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDT 100 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34445555555555555542 11111122234444455555555555555444444433
No 372
>KOG4571|consensus
Probab=35.44 E-value=88 Score=28.07 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy14403 105 IADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMIDISMW 158 (168)
Q Consensus 105 ~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~~~~~ 158 (168)
.+++.-+...|..+|++.+.+++ .+|.||+.++.+.+-+|
T Consensus 250 ~E~l~ge~~~Le~rN~~LK~qa~--------------~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 250 KEALLGELEGLEKRNEELKDQAS--------------ELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Confidence 44555566667777777666554 45667777777766665
No 373
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=35.34 E-value=3e+02 Score=25.20 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHH
Q psy14403 70 LYDKRVKEMATELTELQGKLSDYN 93 (168)
Q Consensus 70 ~yekrae~La~EI~~LQG~LADyN 93 (168)
.+.++++.+..++.+|+..+++-|
T Consensus 3 ~~~~~~e~~~~~~~~le~~~~~~~ 26 (359)
T PRK00591 3 SMLDKLEALEERYEELEALLSDPE 26 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCC
Confidence 345666677777777777666544
No 374
>cd04772 HTH_TioE_rpt1 First Helix-Turn-Helix DNA binding domain of the regulatory protein TioE. Putative helix-turn-helix (HTH) regulatory protein, TioE, and related proteins. TioE is part of the thiocoraline gene cluster, which is involved in the biosynthesis of the antitumor thiocoraline from the marine actinomycete, Micromonospora. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Proteins in this family are unique within the MerR superfamily in that they are composed of just two adjacent MerR-like N-terminal domains; this CD contains the N-terminal or first repeat (rpt1) of these tandem MerR-like domain proteins.
Probab=35.28 E-value=1.7e+02 Score=21.20 Aligned_cols=44 Identities=11% Similarity=-0.031 Sum_probs=24.0
Q ss_pred cCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 101 TQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAE 146 (168)
Q Consensus 101 t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~e 146 (168)
.|++++.+..-.......+ ..+.++-+-..++..++++++++.+
T Consensus 55 ~g~~l~~i~~~~~~~~~~~--~~~~~~ll~~~~~~l~~~i~~L~~~ 98 (99)
T cd04772 55 PGYGYRVAQRIMRAVHAGI--VASALALVDAAHALLQRYRQQLDQE 98 (99)
T ss_pred hCCCHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677777654333322222 2244555555566667777777655
No 375
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=35.20 E-value=1.2e+02 Score=20.86 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHH-HHHHHH
Q psy14403 35 YYEGLLQLKIRDLTNEIT-RLKRQI 58 (168)
Q Consensus 35 Yy~glLR~Ki~El~~EI~-kL~~e~ 58 (168)
-|++.||+|..+=++||- +|..|-
T Consensus 11 ~yI~~Lk~kLd~Kk~Eil~~ln~EY 35 (56)
T PF08112_consen 11 KYISILKSKLDEKKSEILSNLNMEY 35 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999999984 444443
No 376
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=34.99 E-value=2.2e+02 Score=22.26 Aligned_cols=37 Identities=8% Similarity=0.283 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc
Q psy14403 65 HATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNT 101 (168)
Q Consensus 65 ~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t 101 (168)
-+.|..++.....++.....++.+|.+...|++-+..
T Consensus 12 l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~ 48 (119)
T COG1382 12 LAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEK 48 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567788888888888889999999998888887755
No 377
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=34.92 E-value=1.4e+02 Score=24.57 Aligned_cols=61 Identities=23% Similarity=0.382 Sum_probs=42.2
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q psy14403 32 DKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLT 95 (168)
Q Consensus 32 DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~ 95 (168)
|+.--..-+| .|-+|+.|..||..++ ..+-.+.--.|--.++.|-.||.-|+...+||--+
T Consensus 16 ~~eeV~~~Ir-~iGDlqRE~~RLeTem--nDk~aai~e~Yapq~~~lk~EI~~L~k~vq~yCea 76 (170)
T COG4396 16 DKEEVTAFIR-QIGDLQREVKRLETEM--NDKKAAIEEEYAPQAAPLKAEIMSLTKRVQAYCEA 76 (170)
T ss_pred cHHHHHHHHH-HHHHHHHHHHHHHHHh--cchHhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 4433333333 2556666666665544 34445666788889999999999999999999655
No 378
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=34.89 E-value=2.4e+02 Score=22.58 Aligned_cols=19 Identities=32% Similarity=0.609 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhHhH-HHHHH
Q psy14403 76 KEMATELTELQGKL-SDYNL 94 (168)
Q Consensus 76 e~La~EI~~LQG~L-ADyNl 94 (168)
..|..||..|++.+ .|+|+
T Consensus 94 ~~L~~ei~~l~a~~klD~n~ 113 (177)
T PF07798_consen 94 QELREEINKLRAEVKLDLNL 113 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555543 25554
No 379
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=34.85 E-value=1.8e+02 Score=21.11 Aligned_cols=53 Identities=26% Similarity=0.213 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHh
Q psy14403 45 RDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKV 99 (168)
Q Consensus 45 ~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~ 99 (168)
+.+.++|..|+++....+++-+.+..=- -.....+++.-=..|..||-+-|-.
T Consensus 3 ~~l~~~~~~L~~~~~~l~~~i~~~~~~l--~~~~~~~v~~hI~lLheYNeiKD~g 55 (83)
T PF07061_consen 3 ESLEAEIQELKEQIEQLEKEISELEAEL--IEDPEKIVKRHIKLLHEYNEIKDIG 55 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccCHHHHHHHHHHHHHHHhHHHHHH
Confidence 3444555555554444443333322210 1233334444445567777766654
No 380
>PF02179 BAG: BAG domain; InterPro: IPR003103 BAG domains are present in Bcl-2-associated athanogene 1 and silencer of death domains. The BAG proteins are modulators of chaperone activity, they bind to HSP70/HSC70 proteins and promote substrate release. The proteins have anti-apoptotic activity and increase the anti-cell death function of BCL-2 induced by various stimuli. BAG-1 binds to the serine/threonine kinase Raf-1 or Hsc70/Hsp70 in a mutually exclusive interaction. BAG-1 promotes cell growth by binding to and stimulating Raf-1 activity. The binding of Hsp70 to BAG-1 diminishes Raf-1 signalling and inhibits subsequent events, such as DNA synthesis, as well as arrests the cell cycle. BAG-1 has been suggested to function as a molecular switch that encourages cells to proliferate in normal conditions but become quiescent under a stressful environment []. BAG-family proteins contain a single BAG domain, except for human BAG-5 which has four BAG repeats. The BAG domain is a conserved region located at the C terminus of the BAG-family proteins that binds the ATPase domain of Hsc70/Hsp70. The BAG domain is evolutionarily conserved, and BAG domain containing proteins have been described and/or proven in a variety of organisms including Mus musculus (Mouse), Xenopus spp., Drosophila spp., Bombyx mori (Silk moth), Caenorhabditis elegans, Saccharomyces cerevisiae (Baker's yeast), Schizosaccharomyces pombe (Fission yeast), and Arabidopsis thaliana (Mouse-ear cress). The BAG domain has 110-124 amino acids and is comprised of three anti-parallel alpha-helices, each approximately 30-40 amino acids in length. The first and second helices interact with the serine/threonine kinase Raf-1 and the second and third helices are the sites of the BAG domain interaction with the ATPase domain of Hsc70/Hsp70. Binding of the BAG domain to the ATPase domain is mediated by both electrostatic and hydrophobic interactions in BAG-1 and is energy requiring.; GO: 0051087 chaperone binding; PDB: 1M7K_A 1M62_A 1T7S_A 1UGO_A 1I6Z_A 3A8Y_C 1UK5_A 3FZM_B 3FZL_B 3M3Z_B ....
Probab=34.77 E-value=1.5e+02 Score=20.40 Aligned_cols=73 Identities=22% Similarity=0.268 Sum_probs=39.7
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHH
Q psy14403 43 KIRDLTNEITR-LKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDI 121 (168)
Q Consensus 43 Ki~El~~EI~k-L~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~ 121 (168)
||+++..++.+ |..++..+ .......+...|...|-=.=+-+|.+.++.++ +++.....+-..-..
T Consensus 1 ~I~~i~~~v~~~l~~~v~~~------------~~~~~~~~~~~l~E~L~~~LlkLD~I~~~g~~-~iR~~RK~~v~~iq~ 67 (76)
T PF02179_consen 1 KIEKIIDEVEKELQPEVEQF------------DGKKDEKEYLRLSEMLMQLLLKLDSIETEGNP-EIREKRKQAVKRIQQ 67 (76)
T ss_dssp HHHHHHHHHHHCHHHHHHHH------------HHHHCCHHHHHHHHHHHHHHHHHHTCECSSSH-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH------------hccCcHHHHHHHHHHHHHHHHHhcCcccCCCH-HHHHHHHHHHHHHHH
Confidence 57777777877 77777777 11122222223333333333456777665555 666666555555555
Q ss_pred HHHHHHH
Q psy14403 122 ETRHLEE 128 (168)
Q Consensus 122 ~~~~ld~ 128 (168)
.-..+|.
T Consensus 68 ~l~~lD~ 74 (76)
T PF02179_consen 68 LLDKLDS 74 (76)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 5444443
No 381
>KOG1318|consensus
Probab=34.72 E-value=3.1e+02 Score=25.74 Aligned_cols=90 Identities=19% Similarity=0.154 Sum_probs=63.3
Q ss_pred HHHhhhHHHHHHHHHHH-HHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q psy14403 61 SAKEHATFLLYDKRVKE-MATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQ 139 (168)
Q Consensus 61 ~~~e~s~~~~yekrae~-La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~ 139 (168)
..+.+......|+|-.. .-.=|++|--=|=+.|.-=++++.++-..-.++.+.+|+..+++.. +++..-+.+|..
T Consensus 230 dr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~----E~~~rqk~le~~ 305 (411)
T KOG1318|consen 230 DRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRAR----ELENRQKKLEST 305 (411)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHH----HHHhhhhHHHhH
Confidence 34445555666665444 4445888877788888888899988889999999999987776544 456666666777
Q ss_pred HHHHHHHHHHHhhhh
Q psy14403 140 LHELEAEIEKLDMID 154 (168)
Q Consensus 140 i~~lE~eie~~~~~~ 154 (168)
++.|..++++++..-
T Consensus 306 n~~L~~rieeLk~~~ 320 (411)
T KOG1318|consen 306 NQELALRIEELKSEA 320 (411)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777666543
No 382
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=34.72 E-value=1.7e+02 Score=21.99 Aligned_cols=36 Identities=11% Similarity=0.217 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhh
Q psy14403 65 HATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVN 100 (168)
Q Consensus 65 ~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~ 100 (168)
.......+...+.+...+..|+.++++.+.+++.+.
T Consensus 72 ~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~ 107 (118)
T cd04776 72 GGNRKQLEKMLEKIEKRRAELEQQRRDIDAALAELD 107 (118)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666677777777777777766666544
No 383
>COG1422 Predicted membrane protein [Function unknown]
Probab=34.71 E-value=1.9e+02 Score=24.69 Aligned_cols=47 Identities=19% Similarity=0.313 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhH
Q psy14403 41 QLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKL 89 (168)
Q Consensus 41 R~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~L 89 (168)
+.|+.+++.++.-++++.++..+++..+.. +|.++-..|+.+.|-+|
T Consensus 71 ~ekm~~~qk~m~efq~e~~eA~~~~d~~~l--kkLq~~qmem~~~Q~el 117 (201)
T COG1422 71 QEKMKELQKMMKEFQKEFREAQESGDMKKL--KKLQEKQMEMMDDQREL 117 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHH--HHHHHHHHHHHHHHHHH
Confidence 467888888888888888887776554432 34444445555555444
No 384
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=34.69 E-value=2e+02 Score=21.74 Aligned_cols=24 Identities=33% Similarity=0.381 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHH
Q psy14403 106 ADIEEEYLELRAANDIETRHLEEQ 129 (168)
Q Consensus 106 ~~i~~e~~~Lk~~N~~~~~~ld~i 129 (168)
.++..+=..|+-.|+..++.|+.+
T Consensus 32 ~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 32 QELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666554
No 385
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=34.55 E-value=1.9e+02 Score=21.36 Aligned_cols=53 Identities=13% Similarity=0.043 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy14403 108 IEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMIDISMWID 160 (168)
Q Consensus 108 i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~~~~~~~ 160 (168)
.......++..-+..+..+-+...+++..|.-..+-..+........+.+.+|
T Consensus 80 q~~~l~~~~~~~e~~r~~l~~a~~~~k~lekL~ek~~~~~~~~~~r~EQk~lD 132 (141)
T TIGR02473 80 QQQELALLQQEVEAKRERLLEARRELKALEKLKEKKQKEYRAEEAKREQKEMD 132 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455555555566666666666666654444444444444444444443
No 386
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=34.51 E-value=3.4e+02 Score=24.30 Aligned_cols=87 Identities=15% Similarity=0.227 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHhcHHHHH
Q psy14403 47 LTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQ--TNIADIEEEYLELRAANDIETR 124 (168)
Q Consensus 47 l~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~--~d~~~i~~e~~~Lk~~N~~~~~ 124 (168)
|...|.++.+-+....+. ....+++.+.|..+|+.++-.|++++...+-.--| .+..++...+.++...-...+.
T Consensus 72 l~~~~~k~~~si~~q~~~---i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~ 148 (301)
T PF06120_consen 72 LRANIAKAEESIAAQKRA---IEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQE 148 (301)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666555554443 34456777777777777777777765444222211 3345555555555555555555
Q ss_pred HHHHHHHHHHHH
Q psy14403 125 HLEEQFTERSKK 136 (168)
Q Consensus 125 ~ld~iF~eR~~~ 136 (168)
.+..+-......
T Consensus 149 ~l~q~~~k~~~~ 160 (301)
T PF06120_consen 149 RLEQMQSKASET 160 (301)
T ss_pred HHHHHHHHHHHH
Confidence 555444433333
No 387
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=34.44 E-value=2.1e+02 Score=26.50 Aligned_cols=25 Identities=12% Similarity=0.380 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 38 GLLQLKIRDLTNEITRLKRQIELSA 62 (168)
Q Consensus 38 glLR~Ki~El~~EI~kL~~e~e~~~ 62 (168)
|+|..+...|...|.+|.++++..+
T Consensus 402 G~l~~~~~~l~~~i~~l~~~i~~~~ 426 (462)
T PRK08032 402 GIIKTATDGVNKTLKKLTKQYNAVS 426 (462)
T ss_pred ccchhHHhHHHHHHHHHHHHHHHHH
Confidence 4444444444445555544444443
No 388
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=34.40 E-value=2.1e+02 Score=21.89 Aligned_cols=46 Identities=30% Similarity=0.338 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHH
Q psy14403 68 FLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQ 129 (168)
Q Consensus 68 ~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~i 129 (168)
+..+++....+..++.+|+..+ .++..+=..|+..|+..++.++++
T Consensus 10 l~~le~~l~~l~~el~~LK~~~----------------~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKKQL----------------AELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555443 356666777777788887777765
No 389
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=34.38 E-value=54 Score=24.40 Aligned_cols=13 Identities=23% Similarity=0.575 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHh
Q psy14403 74 RVKEMATELTELQ 86 (168)
Q Consensus 74 rae~La~EI~~LQ 86 (168)
+...+-.++..++
T Consensus 24 ~l~~~~~~~~~~~ 36 (144)
T PF04350_consen 24 NLEELKKQLEQLE 36 (144)
T ss_dssp SHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3333333333333
No 390
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=33.83 E-value=4.4e+02 Score=25.40 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHHHHH
Q psy14403 65 HATFLLYDKRVKEMAT 80 (168)
Q Consensus 65 ~s~~~~yekrae~La~ 80 (168)
...+..|++|++++..
T Consensus 190 ~~~~~~yk~~v~~i~~ 205 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKK 205 (555)
T ss_pred chhHHHHHHHHHHHHh
Confidence 3456667777666554
No 391
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=33.76 E-value=4e+02 Score=25.47 Aligned_cols=44 Identities=18% Similarity=0.329 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q psy14403 44 IRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMD 97 (168)
Q Consensus 44 i~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~D 97 (168)
++-|..+...+.+++..+.++ .+.|..|-..|+.+..+..--+.
T Consensus 61 lrTlva~~k~~r~~~~~l~~~----------N~~l~~eN~~L~~r~~~id~~i~ 104 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISE----------NEALKAENERLQKREQSIDQQIQ 104 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhhhHHHHHH
Confidence 455555555555555544443 34556666666666655544433
No 392
>TIGR02648 rep_term_tus DNA replication terminus site-binding protein. Members of this protein family are found on the main chromosomes of a number of the Gammaproteobacteria; this model excludes related plasmid proteins, which score between trusted and noise cutoffs. This protein, DNA replication terminus site-binding protein, binds specific DNA sites near the replication terminus to arrest the DNA replication fork.
Probab=33.68 E-value=71 Score=28.74 Aligned_cols=69 Identities=22% Similarity=0.300 Sum_probs=47.3
Q ss_pred ccCCCCCCCCCCCCCCCccc--ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy14403 10 QQGLSGLRTGSALRGPGFRQ--VQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTEL 85 (168)
Q Consensus 10 QqGl~G~rt~~~~~Gp~~RQ--V~DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~L 85 (168)
+|+-.+.++..+.|-||.=- |-+..| +....+.++||+|+.++|.+-.-.|.|.. +.|.+.+-.-+..|
T Consensus 71 h~~~~~~SsKaA~RlPGvLc~~~~~~~~------~~~~~~I~~IN~lK~~le~iIt~eSgl~~-~~RFE~VH~~lpGL 141 (300)
T TIGR02648 71 HHQSENRSSKAAVRLPGVLCFSVNNLQY------AAAVSLIQEINKLKAELEHIVTVESGLPT-EQRFEFVHSHLHGL 141 (300)
T ss_pred cCCcccccccchhccCCEEEEeCCchhH------HHHHHHHHHHHHHHHHHHHHhhhhcCCCh-HHHHHHHHHhCchh
Confidence 34434455554566777211 222222 36677888999999999999998888888 88999988776655
No 393
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=33.68 E-value=3.3e+02 Score=23.81 Aligned_cols=70 Identities=14% Similarity=0.216 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhh--cCCCHHHHHHHHHH
Q psy14403 39 LLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVN--TQTNIADIEEEYLE 114 (168)
Q Consensus 39 lLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~--t~~d~~~i~~e~~~ 114 (168)
.+-.+-..|...++.+..++.....+- ....+....+|-.|=.+||++|.-+-+.. .+.++.++.++...
T Consensus 131 ~vl~~a~~l~~~~n~~~~~L~~~~~~~------~~~i~~~V~~iN~ll~~Ia~lN~~I~~~~~~~g~~~n~L~DqRD~ 202 (322)
T TIGR02492 131 AVLESAQALANSFNQTSNELQDLRKGI------NAEIKSAVTEINSLLKQIASLNKEIQQVEAKSGQDANDLLDQRDL 202 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHhHHHHHH
Confidence 345566666666666666666655442 23445566667777777777777666654 34555555544433
No 394
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=33.42 E-value=1.6e+02 Score=20.07 Aligned_cols=57 Identities=9% Similarity=0.216 Sum_probs=39.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHH
Q psy14403 32 DKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLS 90 (168)
Q Consensus 32 DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LA 90 (168)
++.--+..+...+.|...-|..|.-|+... ..+.-..|..+....-.+++.|+.+|.
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~--p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSL--PPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555566666777777777777776666655 446677788888888888888777664
No 395
>KOG4807|consensus
Probab=33.36 E-value=71 Score=30.39 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=24.2
Q ss_pred ccchhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHhh
Q psy14403 30 VQDKRYYEGLLQLKIRDL---TNEITRLKRQIELSAKEH 65 (168)
Q Consensus 30 V~DksYy~glLR~Ki~El---~~EI~kL~~e~e~~~~e~ 65 (168)
-.|.--..-|||-|-+|| .+||.-|+.|+....+++
T Consensus 504 gkdayELEVLLRVKEsEiQYLKqEissLkDELQtalrDK 542 (593)
T KOG4807|consen 504 GKDAYELEVLLRVKESEIQYLKQEISSLKDELQTALRDK 542 (593)
T ss_pred CcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334333456889998876 578888877777666653
No 396
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=33.34 E-value=1.9e+02 Score=20.95 Aligned_cols=54 Identities=11% Similarity=0.236 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhh
Q psy14403 47 LTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVN 100 (168)
Q Consensus 47 l~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~ 100 (168)
|...|..+..+.+.+++.-.....=-....+|-.-+..+-.+|.+.|..|..++
T Consensus 9 Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~ 62 (75)
T PF05531_consen 9 IRQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQ 62 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333333333333344444444444444444444433
No 397
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=33.25 E-value=2.3e+02 Score=21.86 Aligned_cols=94 Identities=20% Similarity=0.265 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCC-------HHHHHHHH
Q psy14403 42 LKIRDLTNEITRLKRQIELSAKE--HATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTN-------IADIEEEY 112 (168)
Q Consensus 42 ~Ki~El~~EI~kL~~e~e~~~~e--~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d-------~~~i~~e~ 112 (168)
.+..++..+|.....+....-.. -.....|-.-...+...++.+.-.+.||..+..++....+ -.+++.-.
T Consensus 95 ~~~~~~~~~i~~~~~~~~~~~~~~vi~pl~~~~~~~~~i~~~~kkr~~~~ldyd~~~~k~~k~~~~~~~~~~~~~l~~a~ 174 (229)
T PF03114_consen 95 EKFGEAMQEIEEARKELESQIESTVIDPLKEFLKEFKEIKKLIKKREKKRLDYDSARSKLEKLRKKKSKSSKEEKLEEAK 174 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTSSBTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHH
Confidence 34455555555555444433222 1233445577788888999999999999999888876332 56677777
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHH
Q psy14403 113 LELRAANDIETRHLEEQFTERSK 135 (168)
Q Consensus 113 ~~Lk~~N~~~~~~ld~iF~eR~~ 135 (168)
.++...|+.....+..++..+..
T Consensus 175 ~~f~~~~~~l~~~l~~l~~~~~~ 197 (229)
T PF03114_consen 175 EEFEALNEELKEELPKLFAKRQD 197 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888999999999988866543
No 398
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=33.23 E-value=14 Score=35.79 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 108 IEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKL 150 (168)
Q Consensus 108 i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~ 150 (168)
+......++.++......++..-......+.++..+++++...
T Consensus 361 ~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l 403 (713)
T PF05622_consen 361 LKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEAL 403 (713)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555566665555555566666666666543
No 399
>PF06465 DUF1087: Domain of Unknown Function (DUF1087); InterPro: IPR009463 This is a group of proteins of unknown function.
Probab=33.09 E-value=63 Score=22.84 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=18.5
Q ss_pred ccchhhhHHHHHHHHHHHHHHHH
Q psy14403 30 VQDKRYYEGLLQLKIRDLTNEIT 52 (168)
Q Consensus 30 V~DksYy~glLR~Ki~El~~EI~ 52 (168)
.-|++||.-|||-+......+..
T Consensus 21 ~~~~~yWe~LLr~~ye~~q~e~~ 43 (66)
T PF06465_consen 21 STDPNYWEKLLRHRYEQQQEEEE 43 (66)
T ss_pred ccchHHHHHHHHHHHHHHHHHHH
Confidence 45899999999998887776643
No 400
>KOG4098|consensus
Probab=33.04 E-value=2.6e+02 Score=22.54 Aligned_cols=78 Identities=13% Similarity=0.260 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHH--------------HHHHHHHHHHHhcHHHHHHHHHHH
Q psy14403 65 HATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIA--------------DIEEEYLELRAANDIETRHLEEQF 130 (168)
Q Consensus 65 ~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~--------------~i~~e~~~Lk~~N~~~~~~ld~iF 130 (168)
-+.|..|..+...++..|.+|+-.+-..-++++-+.. .||. .|..-+=.|...-+..+..+..+.
T Consensus 21 ~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~-~dp~RKCfRmIgGvLVErTVkeVlP~L~~nke~i~~~i~~l~ 99 (140)
T KOG4098|consen 21 VAKYNALRSELQQIASKITDLEMDLREHKLVIETLKD-LDPTRKCFRMIGGVLVERTVKEVLPILQTNKENIEKVIKKLT 99 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh-cChhhHHHHHhccchhhhhHHHHhHHHHhhHHHHHHHHHHHH
Confidence 3568888888888888899998888888888888866 4443 234444455555555566665555
Q ss_pred HHHHHHHHHHHHH
Q psy14403 131 TERSKKQHQLHEL 143 (168)
Q Consensus 131 ~eR~~~E~~i~~l 143 (168)
..=.++..++++-
T Consensus 100 ~qL~~k~kElnkf 112 (140)
T KOG4098|consen 100 DQLVQKGKELNKF 112 (140)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 401
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=32.71 E-value=1.4e+02 Score=22.05 Aligned_cols=53 Identities=17% Similarity=0.123 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc
Q psy14403 49 NEITRLKRQIELSA--KEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNT 101 (168)
Q Consensus 49 ~EI~kL~~e~e~~~--~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t 101 (168)
.||..+-....... -.......++.+.+.+..++++|+..++.+...++++..
T Consensus 60 ~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~ 114 (116)
T cd04769 60 AELKAIFAGHEGRAVLPWPHLQQALEDKKQEIRAQITELQQLLARLDAFEASLKD 114 (116)
T ss_pred HHHHHHHhccccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45555544433321 123446778999999999999999999988877777643
No 402
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=32.55 E-value=5.2e+02 Score=25.84 Aligned_cols=11 Identities=27% Similarity=0.401 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q psy14403 139 QLHELEAEIEK 149 (168)
Q Consensus 139 ~i~~lE~eie~ 149 (168)
.+++...++..
T Consensus 608 ~~~~~~~~l~~ 618 (782)
T PRK00409 608 ELIEARKRLNK 618 (782)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 403
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=32.51 E-value=4e+02 Score=24.44 Aligned_cols=71 Identities=27% Similarity=0.436 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHh-hcCCC-HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 66 ATFLLYDKRVKEMATELTELQGKLSDYNLTMDKV-NTQTN-IADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHEL 143 (168)
Q Consensus 66 s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~-~t~~d-~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~l 143 (168)
.....+.++..++..++.+|+.+---....+.+. ..+.+ .+++.++...|++ +-+..|.++..+
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~--------------~~~~~~~~~~~~ 95 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKE--------------ELTELSAALKAL 95 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH--------------HHHHHHHHHHHH
Confidence 3345556666666666666664443333333221 22222 3444444444443 233455555555
Q ss_pred HHHHHHH
Q psy14403 144 EAEIEKL 150 (168)
Q Consensus 144 E~eie~~ 150 (168)
|.++...
T Consensus 96 ~~~~~~~ 102 (418)
T TIGR00414 96 EAELQDK 102 (418)
T ss_pred HHHHHHH
Confidence 5555543
No 404
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=32.31 E-value=1.8e+02 Score=26.47 Aligned_cols=51 Identities=16% Similarity=0.181 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14403 103 TNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMI 153 (168)
Q Consensus 103 ~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~ 153 (168)
+....+...+..++.+++........+-.+......++.+++.++++++..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (398)
T PTZ00454 15 HTERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSV 65 (398)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345566777777888888888888888888888888999999999888654
No 405
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=32.29 E-value=1.3e+02 Score=27.09 Aligned_cols=18 Identities=28% Similarity=0.527 Sum_probs=0.5
Q ss_pred HHHHHHHHHHHHHHHHhH
Q psy14403 70 LYDKRVKEMATELTELQG 87 (168)
Q Consensus 70 ~yekrae~La~EI~~LQG 87 (168)
.+.+..++|..||..+.-
T Consensus 102 el~~~~~elkkEie~IKk 119 (370)
T PF02994_consen 102 ELKKRIKELKKEIENIKK 119 (370)
T ss_dssp ----------------H-
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 344555555566555553
No 406
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=32.05 E-value=3.1e+02 Score=23.03 Aligned_cols=42 Identities=26% Similarity=0.359 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 108 IEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEK 149 (168)
Q Consensus 108 i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~ 149 (168)
+..++.=.+..-+.++.++|.+-.-|.++-.++++||-+++.
T Consensus 129 ~~QQalvy~hMSeeER~EaeQLQsLR~avRqElqELE~QL~D 170 (179)
T PF14723_consen 129 MRQQALVYRHMSEEEREEAEQLQSLRSAVRQELQELEFQLED 170 (179)
T ss_pred HHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556677889999999999999999999999999875
No 407
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=31.89 E-value=1.6e+02 Score=21.45 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKEHATFLLY 71 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~y 71 (168)
|+.-..+|...|..-+.+.+.+..++..+..|
T Consensus 28 LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~Y 59 (80)
T PF10224_consen 28 LQDSLEALSDRVEEVKEENEKLESENEYLQQY 59 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555554
No 408
>PLN02943 aminoacyl-tRNA ligase
Probab=31.83 E-value=2.1e+02 Score=29.23 Aligned_cols=46 Identities=7% Similarity=0.090 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHH--hhcCCCHHHHHHHHHHHH
Q psy14403 71 YDKRVKEMATELTELQGKLSDYNLTMDK--VNTQTNIADIEEEYLELR 116 (168)
Q Consensus 71 yekrae~La~EI~~LQG~LADyNl~~Dk--~~t~~d~~~i~~e~~~Lk 116 (168)
+++....|.+++..||++|+.+..-+.+ ....+.++.++.+..+|.
T Consensus 887 ~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~ 934 (958)
T PLN02943 887 ISAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAA 934 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHH
Confidence 5666777778888888888877777664 345777788887777766
No 409
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=31.64 E-value=2.4e+02 Score=28.04 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=17.9
Q ss_pred hhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhh
Q psy14403 33 KRYYEGLLQLKIRDLT-NEITRLKRQIELSAKEHA 66 (168)
Q Consensus 33 ksYy~glLR~Ki~El~-~EI~kL~~e~e~~~~e~s 66 (168)
...|..+|..++.-|+ .|+.+|.+|.+.+.++-.
T Consensus 410 ~~q~~~il~m~l~~lt~~e~~kl~~e~~~l~~~i~ 444 (738)
T TIGR01061 410 ENQAEAIVSLRLYRLTNTDIFELKEEQNELEKKII 444 (738)
T ss_pred HHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666665 455555555444443333
No 410
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=31.60 E-value=3e+02 Score=26.26 Aligned_cols=66 Identities=12% Similarity=0.213 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q psy14403 68 FLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQ 137 (168)
Q Consensus 68 ~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E 137 (168)
|...++ .+.+..+|.+|+.+++.++..+-.-.. .++-...+.++..+-+...+.++++|.+-.+.+
T Consensus 564 ~~~~~~-~~~~e~~i~~le~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 629 (635)
T PRK11147 564 YKLQRE-LEQLPQLLEDLEAEIEALQAQVADADF---FSQPHEQTQKVLADLADAEQELEVAFERWEELE 629 (635)
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCchh---hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555 777888888888888887776631111 111111344444444555556666666654444
No 411
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=31.57 E-value=3e+02 Score=22.73 Aligned_cols=113 Identities=20% Similarity=0.237 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCC--------------
Q psy14403 39 LLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTN-------------- 104 (168)
Q Consensus 39 lLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d-------------- 104 (168)
+.|-|.+.+.......+.+++.+..+...+...-++...+...+..- ..++--.++..++.+.+
T Consensus 29 ~~rwk~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~v~~~~~~~~~~~e~~~~~~~~~~~ 106 (177)
T PF03234_consen 29 LFRWKHQARHERREERKQEIEELKYERKINEKLLKRIQKLLSALDKE--EEADKQEVMESLNEPFDKKEKPGVENKDPEQ 106 (177)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--ccchHHHHHHHHhcccccccccccccCCCCC
Confidence 45889999999999999999999999998888888888887777665 23333445555544332
Q ss_pred --HHHHHHHH-HHHHHhcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14403 105 --IADIEEEY-LELRAANDI--ETRHLEEQFTERSKKQHQLHELEAEIEKLDMI 153 (168)
Q Consensus 105 --~~~i~~e~-~~Lk~~N~~--~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~ 153 (168)
+..+...+ ..++...+. ....+..|=..+.......++++.+++++..-
T Consensus 107 p~y~~Mi~~L~~qvk~~~de~~~~~~~~~l~~H~~kl~~~~ke~~~kLeeLekE 160 (177)
T PF03234_consen 107 PTYDEMIEDLLDQVKKEPDEKSGKAELEELQEHRAKLEKEQKELKKKLEELEKE 160 (177)
T ss_pred CCHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222 223222211 45556666666777777777777776666543
No 412
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=31.57 E-value=4.1e+02 Score=24.38 Aligned_cols=17 Identities=47% Similarity=0.655 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14403 134 SKKQHQLHELEAEIEKL 150 (168)
Q Consensus 134 ~~~E~~i~~lE~eie~~ 150 (168)
+..|.++..+|+++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 83 KALEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555556666665553
No 413
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=31.52 E-value=91 Score=29.17 Aligned_cols=75 Identities=24% Similarity=0.354 Sum_probs=38.3
Q ss_pred hHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCH
Q psy14403 36 YEGLLQLKIR----------DLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNI 105 (168)
Q Consensus 36 y~glLR~Ki~----------El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~ 105 (168)
|-=++++|.. ||..||.-+.......++ ++.|+..++++-..+|.++ ..
T Consensus 306 ~~Di~~~k~~~gWrT~~Ii~ELe~Ei~~~~~~~~~~~~------------------l~~L~~~~~~~~~~~~~~~---~~ 364 (448)
T PF05761_consen 306 YGDILKSKKRHGWRTAAIIPELEQEIEIWNSKKYRFEE------------------LQELEELLEELQDHLDQLR---SS 364 (448)
T ss_dssp TTTHHHHHHHH-SEEEEE-TTHHHHHHHHHHTHHHHHH------------------HHHHHHHCHHHHCHHHHHH---HH
T ss_pred hhhhhhhccccceEEEEEehhhhhhhhhhhhcchhhhH------------------HHHHHHHHHHHHHHhcccc---cc
Confidence 4446677654 777777766654433222 3334444444333344333 34
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHH
Q psy14403 106 ADIEEEYLELRAANDIETRHLEEQFT 131 (168)
Q Consensus 106 ~~i~~e~~~Lk~~N~~~~~~ld~iF~ 131 (168)
++.+....+++..-...+..++..|.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~fn 390 (448)
T PF05761_consen 365 SELRPDISELRKERRELRREMKELFN 390 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhcc
Confidence 44555555555555555555555554
No 414
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=31.30 E-value=4e+02 Score=24.11 Aligned_cols=94 Identities=22% Similarity=0.284 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcC---CCHHHHHHHHHHHHHhcHHHHHHH-------HHHHHHHHHHHHH
Q psy14403 70 LYDKRVKEMATELTELQGKLSDYNLTMDKVNTQ---TNIADIEEEYLELRAANDIETRHL-------EEQFTERSKKQHQ 139 (168)
Q Consensus 70 ~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~---~d~~~i~~e~~~Lk~~N~~~~~~l-------d~iF~eR~~~E~~ 139 (168)
.+.++..++..+++-|.-+++++=.....+.+- .+.+++..++..++.++......+ .++-.+|-.--..
T Consensus 90 ~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K 169 (319)
T PF09789_consen 90 ELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCK 169 (319)
T ss_pred HHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777888888888886655544332 345777778888888888765443 4555666666668
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhh
Q psy14403 140 LHELEAEIEKLDMIDISMWIDIST 163 (168)
Q Consensus 140 i~~lE~eie~~~~~~~~~~~~~~~ 163 (168)
+..|-.|+.-.=.-+.+..+||.+
T Consensus 170 ~~RLN~ELn~~L~g~~~rivDIDa 193 (319)
T PF09789_consen 170 AHRLNHELNYILNGDENRIVDIDA 193 (319)
T ss_pred HHHHHHHHHHHhCCCCCCcccHHH
Confidence 888888888888888887777643
No 415
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=31.28 E-value=58 Score=18.65 Aligned_cols=17 Identities=18% Similarity=0.509 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhHhHHHH
Q psy14403 76 KEMATELTELQGKLSDY 92 (168)
Q Consensus 76 e~La~EI~~LQG~LADy 92 (168)
+.|...|.+|+-+|+++
T Consensus 4 ~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 4 NRLRNRISDLERQLSEC 20 (23)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455556666666553
No 416
>KOG4360|consensus
Probab=31.18 E-value=5.2e+02 Score=25.39 Aligned_cols=43 Identities=28% Similarity=0.247 Sum_probs=20.2
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14403 112 YLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMID 154 (168)
Q Consensus 112 ~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~ 154 (168)
+-..+.+-+.+..++.++=..-.+-...+.+.|+|+..++.-+
T Consensus 263 Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs~~ 305 (596)
T KOG4360|consen 263 LQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRSCD 305 (596)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 3333444444444444443333333445555666666665443
No 417
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=31.16 E-value=3.5e+02 Score=23.35 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy14403 108 IEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMIDI 155 (168)
Q Consensus 108 i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~~ 155 (168)
|..+...++.+|.+..+++-..| ..+..+..||+.++.--.
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~-------~~~~~L~~Ev~~L~~DN~ 124 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQ-------QTISSLRREVESLRADNV 124 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 44445555555555555554444 445555555555544333
No 418
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=31.14 E-value=1.9e+02 Score=20.26 Aligned_cols=22 Identities=18% Similarity=0.427 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHH
Q psy14403 47 LTNEITRLKRQIELSAKEHATF 68 (168)
Q Consensus 47 l~~EI~kL~~e~e~~~~e~s~~ 68 (168)
|.+||..|+..++...+..++|
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~ 24 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVH 24 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554443
No 419
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=31.11 E-value=2.1e+02 Score=20.76 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELS 61 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~ 61 (168)
++.+..+|..||.+|++++..-
T Consensus 6 ~~~~r~~LeqeV~~Lq~~L~~E 27 (88)
T PF14389_consen 6 LHERRSALEQEVAELQKQLQEE 27 (88)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 4667788889999998887643
No 420
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=30.99 E-value=2.9e+02 Score=25.76 Aligned_cols=52 Identities=15% Similarity=0.275 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHH
Q psy14403 66 ATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETR 124 (168)
Q Consensus 66 s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~ 124 (168)
-+....++|.++|..+|+.++..|.++++ +.+-.++..++..+........+
T Consensus 163 vQ~~L~~~Rl~~L~~qi~~~~~~l~~~~~-------~~~~~~~~~~~~~l~~~~~~l~~ 214 (475)
T PF10359_consen 163 VQIELIQERLDELEEQIEKHEEKLGELEL-------NPDDPELKSDIEELERHISSLKE 214 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccc-------ccccHHHHHHHHHHHHHHHHHHH
Confidence 34556789999999999999999999887 34444455555555444443333
No 421
>PRK08724 fliD flagellar capping protein; Validated
Probab=30.97 E-value=1.9e+02 Score=28.73 Aligned_cols=52 Identities=15% Similarity=0.240 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHhHhH
Q psy14403 38 GLLQLKIRDLTNEITRLKRQIELSAKEHATF-LLYDKRVKEMATELTELQGKL 89 (168)
Q Consensus 38 glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~-~~yekrae~La~EI~~LQG~L 89 (168)
|.|..+..-|...|.+|.++++.+++.-..+ ..|.+++-+|..=|..|+.+.
T Consensus 613 G~I~~R~~sL~~~i~~l~dqi~~Le~Rle~~E~Ry~~QFtAMD~~msqMnsQ~ 665 (673)
T PRK08724 613 GSIRTREKSLREQNYRLNDDQVALDRRMESLEKRTHAKFAAMQDATGKMQGQL 665 (673)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666665555443322 334444444444444444433
No 422
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=30.77 E-value=4.1e+02 Score=24.13 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q psy14403 68 FLLYDKRVKEMATELTELQGKLSDYNLTM 96 (168)
Q Consensus 68 ~~~yekrae~La~EI~~LQG~LADyNl~~ 96 (168)
+..++++..+|++++..+++++++++...
T Consensus 344 ~~~l~~~~~~L~~~~~~l~~~~~~~~~~~ 372 (458)
T COG3206 344 LALLEQQEAALEKELAQLKGRLSKLPKLQ 372 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHhh
Confidence 56677777888888888888888777654
No 423
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.58 E-value=1.9e+02 Score=25.34 Aligned_cols=40 Identities=23% Similarity=0.279 Sum_probs=31.3
Q ss_pred CCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14403 25 PGFRQVQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEH 65 (168)
Q Consensus 25 p~~RQV~DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~ 65 (168)
|..|-..+.+|=++-|+.+++.+.-+|++|.- ++..+..+
T Consensus 46 ~~~~~~~~~~~~~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~ 85 (262)
T COG1729 46 PLERVQNAHSYRLTQLEQQLRQLQGKIEELRG-IQELQYQN 85 (262)
T ss_pred ccccccchhhhccHHHHHHHHHHHhhHHHHHh-HHHHHHHH
Confidence 44466778899999999999999999999995 44444444
No 424
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=30.41 E-value=2e+02 Score=21.25 Aligned_cols=18 Identities=6% Similarity=0.200 Sum_probs=7.2
Q ss_pred HHHHHHHhcHHHHHHHHH
Q psy14403 111 EYLELRAANDIETRHLEE 128 (168)
Q Consensus 111 e~~~Lk~~N~~~~~~ld~ 128 (168)
.+..-++...+.-+.||+
T Consensus 53 aa~aAk~EA~RAN~RiDN 70 (85)
T PRK09973 53 QIYAAKSEANRANTRLDA 70 (85)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 333333333444444443
No 425
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=30.34 E-value=2.6e+02 Score=27.51 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHH
Q psy14403 38 GLLQLKIRDLTNEITRLKRQIELSAKEHAT-FLLYDKRVKEMATELTELQGKLS 90 (168)
Q Consensus 38 glLR~Ki~El~~EI~kL~~e~e~~~~e~s~-~~~yekrae~La~EI~~LQG~LA 90 (168)
|+|..+..-|...|.++.++++.++..-.. +..|.+++-+|..-+..|+.+-.
T Consensus 596 G~i~~r~~~l~~~i~~l~~~i~~~e~rl~~~e~rl~~QFtaME~~msqmnsqss 649 (661)
T PRK06664 596 GIIYNKVKGLDERIADNNKKIEEYEKKLESKERKLKGKYLTMDQTVKKMKEQSN 649 (661)
T ss_pred CceehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888888888887764333 34555555555555555555443
No 426
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=30.32 E-value=1.5e+02 Score=20.20 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=22.1
Q ss_pred HHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHH
Q psy14403 83 TELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHL 126 (168)
Q Consensus 83 ~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~l 126 (168)
+.|.--|.-||.++ .+...+..+...|..+|.+.+.-+
T Consensus 19 ~~L~~~l~rY~~vL------~~R~~l~~e~~~L~~qN~eLr~lL 56 (60)
T PF14775_consen 19 DALENFLKRYNKVL------LDRAALIQEKESLEQQNEELRSLL 56 (60)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666655 344456666666666666665443
No 427
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=30.07 E-value=2.7e+02 Score=21.75 Aligned_cols=13 Identities=31% Similarity=0.348 Sum_probs=5.3
Q ss_pred HHHhHhHHHHHHH
Q psy14403 83 TELQGKLSDYNLT 95 (168)
Q Consensus 83 ~~LQG~LADyNl~ 95 (168)
+.+|.+|-|+=++
T Consensus 80 ~~~q~EldDLL~l 92 (136)
T PF04871_consen 80 KEAQSELDDLLVL 92 (136)
T ss_pred HhhhhhHHHHHHH
Confidence 3344444444333
No 428
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=30.04 E-value=1.2e+02 Score=21.98 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14403 39 LLQLKIRDLTNEITRLKRQIEL 60 (168)
Q Consensus 39 lLR~Ki~El~~EI~kL~~e~e~ 60 (168)
.|+..+..|..||.+|..++..
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq~ 25 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQQ 25 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555444444
No 429
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=29.80 E-value=3.5e+02 Score=23.16 Aligned_cols=32 Identities=6% Similarity=0.336 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q psy14403 65 HATFLLYDKRVKEMATELTELQGKLSDYNLTM 96 (168)
Q Consensus 65 ~s~~~~yekrae~La~EI~~LQG~LADyNl~~ 96 (168)
+.....+..+.+.|..||..|.|++...+.=+
T Consensus 53 ~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l 84 (263)
T PRK10803 53 SQLLTQLQQQLSDNQSDIDSLRGQIQENQYQL 84 (263)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34567888999999999999999876544433
No 430
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=29.75 E-value=94 Score=16.40 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=21.8
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHh
Q psy14403 92 YNLTMDKVNTQTNIADIEEEYLELRAA 118 (168)
Q Consensus 92 yNl~~Dk~~t~~d~~~i~~e~~~Lk~~ 118 (168)
||.+++-+...-.+++...-+.++...
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 788888888888888888877777654
No 431
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=29.64 E-value=2.2e+02 Score=23.53 Aligned_cols=31 Identities=23% Similarity=0.227 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14403 35 YYEGLLQLKIRDLTNEITRLKRQIELSAKEH 65 (168)
Q Consensus 35 Yy~glLR~Ki~El~~EI~kL~~e~e~~~~e~ 65 (168)
|..++|+.++..|..+++.|..+...+.++.
T Consensus 104 t~~~v~~~e~~kl~~~~e~L~~e~~~L~~~~ 134 (170)
T PRK13923 104 TLEDVLSEQIGKLQEEEEKLSWENQTLKQEL 134 (170)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666555555544
No 432
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=29.61 E-value=3.5e+02 Score=22.91 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q psy14403 47 LTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQ 86 (168)
Q Consensus 47 l~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQ 86 (168)
|..||..|.+++...++--..|...+...++|-..++.|+
T Consensus 41 L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lE 80 (193)
T PF14662_consen 41 LAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLE 80 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555444444444444444444444443
No 433
>PLN02320 seryl-tRNA synthetase
Probab=29.60 E-value=5.1e+02 Score=24.83 Aligned_cols=71 Identities=14% Similarity=0.106 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 67 TFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAE 146 (168)
Q Consensus 67 ~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~e 146 (168)
....+..+..++..++..|+.+ -|.+-.++......+ +..+|++ ++..|=.+=+.+|+++..++.+
T Consensus 94 ~l~~ld~~~r~~~~~~~~lr~e---rn~~sk~i~~~~~~~----~~~~l~~-------~~k~lk~~i~~le~~~~~~~~~ 159 (502)
T PLN02320 94 LVLELYENMLALQKEVERLRAE---RNAVANKMKGKLEPS----ERQALVE-------EGKNLKEGLVTLEEDLVKLTDE 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhCCC----CHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666555543 344444433222211 2222322 2233333445566666666666
Q ss_pred HHHHh
Q psy14403 147 IEKLD 151 (168)
Q Consensus 147 ie~~~ 151 (168)
+.++.
T Consensus 160 l~~~~ 164 (502)
T PLN02320 160 LQLEA 164 (502)
T ss_pred HHHHH
Confidence 66543
No 434
>KOG4552|consensus
Probab=29.60 E-value=3.9e+02 Score=23.43 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHh
Q psy14403 49 NEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKV 99 (168)
Q Consensus 49 ~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~ 99 (168)
-|+.+|.+-.....+-......+++.++.-..+|..||-.|-+.-.++...
T Consensus 57 ~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtta 107 (272)
T KOG4552|consen 57 DEFKTLLKLAPEQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILTTA 107 (272)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666777777788899999999999999999999998887643
No 435
>KOG3958|consensus
Probab=29.49 E-value=1.5e+02 Score=27.23 Aligned_cols=48 Identities=25% Similarity=0.385 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q psy14403 39 LLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQ 86 (168)
Q Consensus 39 lLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQ 86 (168)
-|.-.++||++|.++++...+....+.-+|...-+-..+|.+++..|+
T Consensus 98 Rll~Ev~eL~~eve~ik~dk~~a~Eek~t~~l~A~vla~lkk~l~al~ 145 (371)
T KOG3958|consen 98 RLLHEVQELTTEVEKIKTDKESATEEKLTPVLLAKVLAALKKQLVALH 145 (371)
T ss_pred HHHHHHHHHHHHHHHHhhchhhhhhhhcchHHHHHHHHHHHHHHHHHH
Confidence 355578999999999999988888999999988888888888887775
No 436
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=29.40 E-value=88 Score=23.56 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q psy14403 44 IRDLTNEITRLKRQIELSAKEHA 66 (168)
Q Consensus 44 i~El~~EI~kL~~e~e~~~~e~s 66 (168)
+.+|..||++|+.++.......+
T Consensus 4 ~s~I~~eIekLqe~lk~~e~kea 26 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETKEA 26 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999887766544
No 437
>smart00338 BRLZ basic region leucin zipper.
Probab=29.35 E-value=1.7e+02 Score=19.35 Aligned_cols=25 Identities=12% Similarity=0.299 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHH
Q psy14403 67 TFLLYDKRVKEMATELTELQGKLSD 91 (168)
Q Consensus 67 ~~~~yekrae~La~EI~~LQG~LAD 91 (168)
....+|.++..|..+..+|..+++.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~ 51 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIER 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 438
>KOG0962|consensus
Probab=29.34 E-value=7.3e+02 Score=26.82 Aligned_cols=37 Identities=11% Similarity=0.174 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 105 IADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLH 141 (168)
Q Consensus 105 ~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~ 141 (168)
+.++..+-..+...-+..++.++..|.+..+.+..+.
T Consensus 821 ~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~ 857 (1294)
T KOG0962|consen 821 VDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREIS 857 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777777766665443
No 439
>PTZ00464 SNF-7-like protein; Provisional
Probab=29.11 E-value=3.5e+02 Score=22.77 Aligned_cols=76 Identities=5% Similarity=0.101 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 69 LLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEA 145 (168)
Q Consensus 69 ~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~ 145 (168)
..+++|.+.|.+-|..|..+|+-|.-.+-+.+. ..-......+..+--+-....++++.++...-..|..+-.+|.
T Consensus 21 ~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~-~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~ 96 (211)
T PTZ00464 21 KRIGGRSEVVDARINKIDAELMKLKEQIQRTRG-MTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTES 96 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666666666666655544432 3223344444444444444566677777777777775555553
No 440
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=28.73 E-value=48 Score=31.61 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHH
Q psy14403 74 RVKEMATELTELQGKLSDYNLTMDK 98 (168)
Q Consensus 74 rae~La~EI~~LQG~LADyNl~~Dk 98 (168)
+.++|.+||.+|+.++.|.|.-|+|
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k 56 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDK 56 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccch
Confidence 4555555555555555555544444
No 441
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=28.58 E-value=2.4e+02 Score=20.86 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHH-------------HHHhhhHHHHHHH--HHHHHHHHHHHHhHh
Q psy14403 45 RDLTNEITRLKRQIEL-------------SAKEHATFLLYDK--RVKEMATELTELQGK 88 (168)
Q Consensus 45 ~El~~EI~kL~~e~e~-------------~~~e~s~~~~yek--rae~La~EI~~LQG~ 88 (168)
.+|..||.-|+.+++. +..+.-.|..|.. .-+.++.+|.+|+.+
T Consensus 27 ~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~~~gerE~l~~eis~L~~~ 85 (86)
T PF12711_consen 27 EALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFYVEGEREMLLQEISELRDQ 85 (86)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 6777777777766553 3333344444432 334566666666654
No 442
>KOG2685|consensus
Probab=28.54 E-value=5.1e+02 Score=24.48 Aligned_cols=104 Identities=15% Similarity=0.228 Sum_probs=53.4
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCC-----
Q psy14403 30 VQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTN----- 104 (168)
Q Consensus 30 V~DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d----- 104 (168)
|.|-.||.|.|-..+.++..||.-|..+...++ .+-++..+=-..|.=++..-.-+-|.|
T Consensus 79 ~~di~~Wk~el~~ele~l~~E~~~L~~~k~rle---------------~~L~~~~~P~~ia~eCL~~RekR~~~dlv~D~ 143 (421)
T KOG2685|consen 79 LDDVNFWKGELDRELEDLAAEIDDLLHEKRRLE---------------RALNALALPLSIAEECLAHREKRQGIDLVHDE 143 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHhcCcHHHHHHHHHHHhhcccchhhccc
Confidence 667777777776666666666666654433332 233344444455555666554444444
Q ss_pred -HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 105 -IADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIE 148 (168)
Q Consensus 105 -~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie 148 (168)
..++..+..-+..=-..+.+.++.+|.+=..-.+.=+.||.+++
T Consensus 144 Ve~EL~kE~eli~~~q~ll~~~~~~a~~Ql~~nr~ar~~Le~Dl~ 188 (421)
T KOG2685|consen 144 VETELHKEVELIENIQELLKKTLERAEEQLRLNREARQNLERDLS 188 (421)
T ss_pred cHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhh
Confidence 12333444444444444555556555554444444444444443
No 443
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=28.49 E-value=2.4e+02 Score=20.77 Aligned_cols=44 Identities=16% Similarity=0.241 Sum_probs=23.1
Q ss_pred HHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHH
Q psy14403 81 ELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHL 126 (168)
Q Consensus 81 EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~l 126 (168)
|+..+-..|--+|.++|.+-.. -+.|...+..|-..|.+.+.++
T Consensus 27 E~~~ins~LD~Lns~LD~LE~r--nD~l~~~L~~LLesnrq~R~e~ 70 (83)
T PF03670_consen 27 EYAAINSMLDQLNSCLDHLEQR--NDHLHAQLQELLESNRQIRLEF 70 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555443 2345555556656665555443
No 444
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=28.35 E-value=88 Score=23.80 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q psy14403 44 IRDLTNEITRLKRQIELSAKEHA 66 (168)
Q Consensus 44 i~El~~EI~kL~~e~e~~~~e~s 66 (168)
..+|..||.+|+.++.......+
T Consensus 5 ~s~I~~eI~kLqe~lk~~e~keA 27 (98)
T PRK13848 5 SSKIREEIAKLQEQLKQAETREA 27 (98)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999988776554
No 445
>KOG0524|consensus
Probab=28.33 E-value=16 Score=33.11 Aligned_cols=29 Identities=28% Similarity=0.587 Sum_probs=23.2
Q ss_pred CcccccccccCCCCCCCCCCCCCCCcccccc
Q psy14403 2 SDSDRLVTQQGLSGLRTGSALRGPGFRQVQD 32 (168)
Q Consensus 2 ~v~dRPvTQqGl~G~rt~~~~~Gp~~RQV~D 32 (168)
+|.|-|||..|+.||-.+-+..| .|=|-+
T Consensus 83 RV~DTPItE~gFtG~avGAA~~G--LrPi~e 111 (359)
T KOG0524|consen 83 RVLDTPITEMGFTGIAVGAAMAG--LRPICE 111 (359)
T ss_pred eeecCcchhcccchhhHhHHHhC--cchhhh
Confidence 58899999999999998755667 466655
No 446
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=28.31 E-value=80 Score=20.84 Aligned_cols=19 Identities=32% Similarity=0.705 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14403 41 QLKIRDLTNEITRLKRQIE 59 (168)
Q Consensus 41 R~Ki~El~~EI~kL~~e~e 59 (168)
|.+++.++.++.++++|++
T Consensus 47 r~~~~~~~k~l~~le~e~~ 65 (68)
T PF06305_consen 47 RRRIRRLRKELKKLEKELE 65 (68)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444445555555554444
No 447
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=28.30 E-value=2.6e+02 Score=25.09 Aligned_cols=49 Identities=27% Similarity=0.300 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14403 105 IADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMI 153 (168)
Q Consensus 105 ~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~ 153 (168)
+..+...+..++.+++.....+.++=.+....+.++.++++++..++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (389)
T PRK03992 3 LEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKSP 51 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 4556777777888888888888888888899999999999999887753
No 448
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=28.20 E-value=3.5e+02 Score=24.45 Aligned_cols=62 Identities=27% Similarity=0.297 Sum_probs=37.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHH
Q psy14403 33 KRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEY 112 (168)
Q Consensus 33 ksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~ 112 (168)
+--|+.=|++|=--| --|+..+. --+.|..+=..||.+|.+||+- ++ -+=|+++-
T Consensus 56 PEQYLTPLQQKEV~i----RHLkakLk----------es~~~l~dRetEI~eLksQL~R-------Mr----EDWIEEEC 110 (305)
T PF15290_consen 56 PEQYLTPLQQKEVCI----RHLKAKLK----------ESENRLHDRETEIDELKSQLAR-------MR----EDWIEEEC 110 (305)
T ss_pred HHHhcChHHHHHHHH----HHHHHHHH----------HHHHHHHhhHHHHHHHHHHHHH-------HH----HHHHHHHH
Confidence 445888888874333 33443332 2355667777888888888863 22 24466666
Q ss_pred HHHHHhc
Q psy14403 113 LELRAAN 119 (168)
Q Consensus 113 ~~Lk~~N 119 (168)
..+.+|-
T Consensus 111 HRVEAQL 117 (305)
T PF15290_consen 111 HRVEAQL 117 (305)
T ss_pred HHHHHHH
Confidence 6655554
No 449
>PRK07737 fliD flagellar capping protein; Validated
Probab=28.17 E-value=3.1e+02 Score=25.76 Aligned_cols=22 Identities=9% Similarity=0.351 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELS 61 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~ 61 (168)
|-.++..|..+|.+|+..++..
T Consensus 446 l~~~i~~l~~~i~~~~~rl~~~ 467 (501)
T PRK07737 446 IGKDLNQIETQIDRFQDRLKQI 467 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666555
No 450
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=28.13 E-value=2.4e+02 Score=20.59 Aligned_cols=61 Identities=25% Similarity=0.183 Sum_probs=30.1
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14403 91 DYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLD 151 (168)
Q Consensus 91 DyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~ 151 (168)
....+..--..|.++++|..-...............+-+-..+...+.+++.++.-+..+.
T Consensus 46 ~l~~I~~lr~~G~sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~ 106 (113)
T cd01109 46 WLEFIKCLRNTGMSIKDIKEYAELRREGDSTIPERLELLEEHREELEEQIAELQETLAYLD 106 (113)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445677777777655443222212223344444455555556665555554443
No 451
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=27.65 E-value=4.6e+02 Score=23.65 Aligned_cols=112 Identities=15% Similarity=0.252 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-------------------HHHHH---HHHHHHHHHHhHhHHHHHH
Q psy14403 37 EGLLQLKIRDLTNEITRLKRQIELSAKEHATFLL-------------------YDKRV---KEMATELTELQGKLSDYNL 94 (168)
Q Consensus 37 ~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~-------------------yekra---e~La~EI~~LQG~LADyNl 94 (168)
+..|..-+..|..|..+|..+...++.....+.. +.++. .....||..|..+++|...
T Consensus 169 lk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~ 248 (306)
T PF04849_consen 169 LKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQ 248 (306)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777877777666666555433322 11222 2233567777777777665
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 95 TMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKL 150 (168)
Q Consensus 95 ~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~ 150 (168)
-+-.+. ++.+++...+...|......+.++-++=..=.+.-.-+++..+|+..+
T Consensus 249 r~k~~~--~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~l 302 (306)
T PF04849_consen 249 RCKQLA--AENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTL 302 (306)
T ss_pred HHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 554443 456677777766666666666665444333333334444455555443
No 452
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=27.64 E-value=5.7e+02 Score=24.78 Aligned_cols=45 Identities=9% Similarity=0.065 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHhHhHHH
Q psy14403 47 LTNEITRLKRQIELSAK---EHATFLLYDKRVKEMATELTELQGKLSD 91 (168)
Q Consensus 47 l~~EI~kL~~e~e~~~~---e~s~~~~yekrae~La~EI~~LQG~LAD 91 (168)
|..-+..|-.-...+.. +.+.....-.+++.|+..+..+-.+|.+
T Consensus 117 l~~~l~~ff~al~~ls~~P~~~a~R~~vl~~A~~La~~~n~~~~~L~~ 164 (627)
T PRK06665 117 LRTRLDDFWDSWQDLSNYPEGLAERQVVLERAQSLGERIHDRYRSLER 164 (627)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443 2222333333444444444444444443
No 453
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=27.59 E-value=2.6e+02 Score=25.95 Aligned_cols=41 Identities=22% Similarity=0.269 Sum_probs=29.7
Q ss_pred ccccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 6 RLVTQQGLSGLRTGSALRGPGFRQVQDKRYYEGLLQLKIRDLTNEITRLKRQIELSA 62 (168)
Q Consensus 6 RPvTQqGl~G~rt~~~~~Gp~~RQV~DksYy~glLR~Ki~El~~EI~kL~~e~e~~~ 62 (168)
-.|..|-|.|+... . ..-||.....|..|++.|+.+.+.++
T Consensus 19 ~~~~~~~~~~~~~~---e-------------~~aLr~EN~~LKkEN~~Lk~eVerLE 59 (420)
T PF07407_consen 19 ETVENHELEGVSID---E-------------NFALRMENHSLKKENNDLKIEVERLE 59 (420)
T ss_pred cccccccccccchh---h-------------hhhHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45667777777652 1 12478888888888888888888883
No 454
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=27.57 E-value=2e+02 Score=19.42 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=17.2
Q ss_pred HHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy14403 79 ATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRA 117 (168)
Q Consensus 79 a~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~ 117 (168)
..+|..+++.|++=|- -+++.++.|..+...|..
T Consensus 17 ~~~i~~~~~kL~n~~F-----~~kAP~eVve~er~kl~~ 50 (66)
T PF10458_consen 17 EKEIERLEKKLSNENF-----VEKAPEEVVEKEREKLEE 50 (66)
T ss_dssp HHHHHHHHHHHCSTTH-----HHHS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccc-----cccCCHHHHHHHHHHHHH
Confidence 3445555555554332 345666666666555543
No 455
>KOG1924|consensus
Probab=27.49 E-value=1.4e+02 Score=30.72 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=32.7
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 112 YLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKL 150 (168)
Q Consensus 112 ~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~ 150 (168)
+++.+++.....+.+|..|..|++.+.++++.|..|..+
T Consensus 469 ~eeseqkA~e~~kk~~ke~ta~qe~qael~k~e~Ki~~l 507 (1102)
T KOG1924|consen 469 AEESEQKAAELEKKFDKELTARQEAQAELQKHEEKIKLL 507 (1102)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccC
Confidence 455666788889999999999999999999999776544
No 456
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=27.32 E-value=5.8e+02 Score=24.74 Aligned_cols=55 Identities=22% Similarity=0.375 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhh
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVN 100 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~ 100 (168)
+..+-..|..-++.+..++.....+ ..........+|-.|=.+||++|.-+-+..
T Consensus 137 vl~~a~~L~~~~n~~~~~L~~~~~~------~~~~i~~~V~~iN~ll~~Ia~LN~qI~~~~ 191 (613)
T PRK08471 137 LAQKTETLTNNIKDTRERLDTLQKK------VNEELKVTVDEINSLGKQIAEINKQIKEVE 191 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344444444555544444444333 233344444455555555555555554443
No 457
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.23 E-value=4.4e+02 Score=23.29 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=23.5
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14403 111 EYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMID 154 (168)
Q Consensus 111 e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~ 154 (168)
+-..|+.+=......++.+-.--++.|..+..|+.+..+...+.
T Consensus 156 dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~ 199 (265)
T COG3883 156 DKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALI 199 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555566666666666665555443
No 458
>KOG3595|consensus
Probab=27.21 E-value=8e+02 Score=26.30 Aligned_cols=128 Identities=17% Similarity=0.172 Sum_probs=81.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHH
Q psy14403 34 RYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYL 113 (168)
Q Consensus 34 sYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~ 113 (168)
+=|..+|..|.+++...-.++..=++++..-.++-....+...++..| |+-+...-|..++++..+..-.+...+..
T Consensus 699 ~~f~~ll~~k~~~~~~~~~r~~~gl~kl~~a~~~v~~l~~~l~~~~~e---l~~~~~~a~~~l~~i~~~~~~~e~~k~~v 775 (1395)
T KOG3595|consen 699 GTFKKLLKEKRSEVRLRKLRLELGLDKLKEAGEQVAGLQKELAALQPE---LQVKSKEANDVLAKILKETQAAEAQKEAV 775 (1395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHHHHHHHHHhhHH---HHHHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 346778889999998888888888888887777766666555555444 45555666777888877655555444443
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhhccc
Q psy14403 114 ELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMIDISMW-IDISTIDS 166 (168)
Q Consensus 114 ~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~~~~~-~~~~~~~~ 166 (168)
.... ...+.....+...++..++.+.+.+--+++-.+..-.+. .|++++.|
T Consensus 776 ~~~e--~~~~~~~~~~~~~k~~v~~~l~~a~P~leeA~aal~ti~k~~l~~lks 827 (1395)
T KOG3595|consen 776 LEDE--KKAQEKAGLIQAQKAEVEEDLEEAEPALEEASAALSTIKKADLSELKS 827 (1395)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCChhhHHHHHh
Confidence 3333 334445566777778888877777766666555443322 34444433
No 459
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=27.19 E-value=2e+02 Score=22.89 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=25.1
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q psy14403 63 KEHATFLLYDKRVKEMATELTELQGKLSDYNL 94 (168)
Q Consensus 63 ~e~s~~~~yekrae~La~EI~~LQG~LADyNl 94 (168)
.+|+.|..-..+...+...|..|+..|+....
T Consensus 42 sENaeY~aak~~~~~le~rI~~L~~~L~~A~i 73 (156)
T TIGR01461 42 SENADYQYGKKRLREIDRRVRFLTKRLENLKV 73 (156)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHhcCEE
Confidence 37888888888888888888888888876543
No 460
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=26.82 E-value=74 Score=27.61 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14403 42 LKIRDLTNEITRLKRQIELSAK 63 (168)
Q Consensus 42 ~Ki~El~~EI~kL~~e~e~~~~ 63 (168)
.||.+|..|..+|..||-++-.
T Consensus 122 qKIsALEdELs~LRaQIA~IV~ 143 (253)
T PF05308_consen 122 QKISALEDELSRLRAQIAKIVA 143 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5999999999999999987643
No 461
>KOG4643|consensus
Probab=26.57 E-value=8.1e+02 Score=26.14 Aligned_cols=76 Identities=22% Similarity=0.209 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHhHh-------HHHH---HHHHHHhhcCCCHH
Q psy14403 41 QLKIRDLTNEITRLKRQIELSAKEHA----TFLLYDKRVKEMATELTELQGK-------LSDY---NLTMDKVNTQTNIA 106 (168)
Q Consensus 41 R~Ki~El~~EI~kL~~e~e~~~~e~s----~~~~yekrae~La~EI~~LQG~-------LADy---Nl~~Dk~~t~~d~~ 106 (168)
=+|+-++.+|=.+|..+++.++..-. .....|-..+.|..|..+|+.+ ++-| |-..|++++ +..
T Consensus 400 ~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls--~~~ 477 (1195)
T KOG4643|consen 400 ISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLS--LQD 477 (1195)
T ss_pred HHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHH--HHH
Confidence 35777777777777776665544332 3333444444444444444443 3333 444444443 566
Q ss_pred HHHHHHHHHHHh
Q psy14403 107 DIEEEYLELRAA 118 (168)
Q Consensus 107 ~i~~e~~~Lk~~ 118 (168)
.+..++++++.+
T Consensus 478 Q~~~et~el~~~ 489 (1195)
T KOG4643|consen 478 QLEAETEELLNQ 489 (1195)
T ss_pred HHHHHHHHHHHH
Confidence 677777777666
No 462
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=26.57 E-value=82 Score=20.37 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 38 GLLQLKIRDLTNEITRLKRQIELSAK 63 (168)
Q Consensus 38 glLR~Ki~El~~EI~kL~~e~e~~~~ 63 (168)
..|..|+.+++.++.+|..|......
T Consensus 17 s~l~~ki~~le~~~s~L~~en~~lR~ 42 (46)
T PF07558_consen 17 SALSIKIQELENEVSKLLNENVNLRE 42 (46)
T ss_dssp -------------HHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHhHHHHHHHHHHHHHH
Confidence 56788999999999999888776543
No 463
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=26.50 E-value=2.2e+02 Score=19.52 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy14403 35 YYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMAT 80 (168)
Q Consensus 35 Yy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~ 80 (168)
|..-.++..+..+.+++..++.+.+.+..+-+.+...+ |.+.+|.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~-rIe~~Ar 68 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHE-RIEKIAK 68 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH-HHHHHHH
Confidence 33446666777777777777777777777776666633 3555554
No 464
>KOG2264|consensus
Probab=26.39 E-value=2.7e+02 Score=27.90 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 36 YEGLLQLKIRDLTNEITRLKRQIELSAK 63 (168)
Q Consensus 36 y~glLR~Ki~El~~EI~kL~~e~e~~~~ 63 (168)
=+-.|..|-.||++||+++...+|...+
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~ 121 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKR 121 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444556666666666666666665544
No 465
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=26.35 E-value=3.5e+02 Score=27.11 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy14403 35 YYEGLLQLKIRDLT-NEITRLKRQIELSA 62 (168)
Q Consensus 35 Yy~glLR~Ki~El~-~EI~kL~~e~e~~~ 62 (168)
.+..+|..++.-|+ .|+.+|++|++.+.
T Consensus 412 qa~~il~m~L~~Lt~~e~~kl~~e~~~l~ 440 (800)
T TIGR01063 412 QAQAILDMRLQRLTGLEREKLQEEYKELL 440 (800)
T ss_pred HHHHHHHhHHHHHhHHHHHHHHHHHHHHH
Confidence 55566666666665 35555555544433
No 466
>PF09421 FRQ: Frequency clock protein; InterPro: IPR018554 The frequency clock protein, is the central component of the frq-based circadian negative feedback loop, regulates various aspects of the circadian clock in Neurospora crassa []. This protein has been shown to interact with itself via a coiled-coil [].
Probab=26.28 E-value=53 Score=33.91 Aligned_cols=70 Identities=23% Similarity=0.307 Sum_probs=47.5
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH----HHHHHHHH-HHHHhHhHHHHHHHHH
Q psy14403 28 RQVQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDK----RVKEMATE-LTELQGKLSDYNLTMD 97 (168)
Q Consensus 28 RQV~DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yek----rae~La~E-I~~LQG~LADyNl~~D 97 (168)
+|...-+==-.-.|+=|.+||-||.||++++..+.+-....+.=+| |..-|-.. -++|+..|-|+=.-+|
T Consensus 121 ~~~~~~sSs~ddyRSVIDDLTve~kkLK~eLkrykq~g~~~L~~dKLFEik~hGLP~~KKrELE~tLR~FAa~l~ 195 (989)
T PF09421_consen 121 AQSGTHSSSADDYRSVIDDLTVENKKLKEELKRYKQRGPAMLRKDKLFEIKIHGLPKRKKRELEATLRDFAASLD 195 (989)
T ss_pred ccccCCCccchhhhhhhhhHHHHHHHHHHHHHHhccCCchhccccceeEEEecCCChHHHHHHHHHHHHHHhhcc
Confidence 4444445455667889999999999999999999887665554332 33333332 3577777777765554
No 467
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=26.13 E-value=5.5e+02 Score=24.05 Aligned_cols=63 Identities=14% Similarity=0.219 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc
Q psy14403 38 GLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNT 101 (168)
Q Consensus 38 glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t 101 (168)
.-.+.-|..|...|..++. .-.-.-..+....+++-.+.|..+-..|=.++-|..-+|+-++.
T Consensus 172 ~~~~~~i~~i~~ki~~~k~-~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRk 234 (424)
T PF03915_consen 172 SEVKESISSIREKIKKVKS-ASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRK 234 (424)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-hhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444 11111134667778888888888888888888888888887754
No 468
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=26.13 E-value=2.3e+02 Score=26.98 Aligned_cols=59 Identities=10% Similarity=0.221 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHH
Q psy14403 68 FLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQ 129 (168)
Q Consensus 68 ~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~i 129 (168)
+...|++.+.|..++++|+.+|+|=+..-| ......++..++.+++..-+....+-+++
T Consensus 570 ~~~~e~~i~~le~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 628 (635)
T PRK11147 570 LEQLPQLLEDLEAEIEALQAQVADADFFSQ---PHEQTQKVLADLADAEQELEVAFERWEEL 628 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhcc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888888888888888888876443222 00134555556666665555555444443
No 469
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=26.02 E-value=3.4e+02 Score=28.09 Aligned_cols=45 Identities=9% Similarity=0.123 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc--CCCHHHHHHHHHHH
Q psy14403 71 YDKRVKEMATELTELQGKLSDYNLTMDKVNT--QTNIADIEEEYLEL 115 (168)
Q Consensus 71 yekrae~La~EI~~LQG~LADyNl~~Dk~~t--~~d~~~i~~e~~~L 115 (168)
+++....|.+|+..|+.+|+.+..-+++.+- .+.++.++.+-.++
T Consensus 840 ~~~e~~rLekel~kl~Kel~kl~~~L~n~~f~~kap~~~veka~~kl 886 (1052)
T PRK14900 840 LAAETARVDKEIGKVDQDLAVLERKLQNPSFVQNAPPAVVEKDRARA 886 (1052)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHH
Confidence 5667777888888888888888887777664 45556665555555
No 470
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=25.81 E-value=3.8e+02 Score=22.12 Aligned_cols=16 Identities=19% Similarity=0.252 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHh
Q psy14403 136 KQHQLHELEAEIEKLD 151 (168)
Q Consensus 136 ~E~~i~~lE~eie~~~ 151 (168)
.+..+..++.+++..+
T Consensus 114 ~~~~l~~~~~~l~~~~ 129 (322)
T TIGR01730 114 AQADLEAAKASLASAQ 129 (322)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 471
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=25.69 E-value=2.6e+02 Score=20.19 Aligned_cols=43 Identities=26% Similarity=0.220 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14403 109 EEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLD 151 (168)
Q Consensus 109 ~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~ 151 (168)
.+-..-+..+-....+.++.+=.........++.++..+++..
T Consensus 76 ~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 118 (120)
T PF02996_consen 76 EEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLY 118 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555666666777777777777777777777777766643
No 472
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=25.67 E-value=3.4e+02 Score=25.50 Aligned_cols=55 Identities=7% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHhhc-----CCCHHHHHHHHHHHHHhcHHHHHHH
Q psy14403 72 DKRVKEMATELTELQGKLSDYNLTMDKVNT-----QTNIADIEEEYLELRAANDIETRHL 126 (168)
Q Consensus 72 ekrae~La~EI~~LQG~LADyNl~~Dk~~t-----~~d~~~i~~e~~~Lk~~N~~~~~~l 126 (168)
++.++.+..=|..||++|++-..-++.+.. +-.+..++.....|+.+-+.++..+
T Consensus 278 ~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl 337 (434)
T PRK15178 278 KETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRL 337 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHh
No 473
>PLN02381 valyl-tRNA synthetase
Probab=25.63 E-value=3.4e+02 Score=28.22 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHH--hhcCCCHHHHHHHHHHHH
Q psy14403 71 YDKRVKEMATELTELQGKLSDYNLTMDK--VNTQTNIADIEEEYLELR 116 (168)
Q Consensus 71 yekrae~La~EI~~LQG~LADyNl~~Dk--~~t~~d~~~i~~e~~~Lk 116 (168)
+++..+.|.+++..||.+|+-+..-+.. ....+..+.++.+...|.
T Consensus 995 ~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~~vve~e~~kl~ 1042 (1066)
T PLN02381 995 AEAELEKLRNKMDEIQKQQEKLEKKMNASGYKEKVPANIQEEDARKLT 1042 (1066)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhcCCHHHHHHHHHHHH
Confidence 4566667777777777777766665553 235666777777666665
No 474
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=25.58 E-value=62 Score=30.88 Aligned_cols=20 Identities=45% Similarity=0.630 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14403 39 LLQLKIRDLTNEITRLKRQIE 59 (168)
Q Consensus 39 lLR~Ki~El~~EI~kL~~e~e 59 (168)
+++ ||.+|++|+..|++|.+
T Consensus 29 ~~q-kie~L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 29 LLQ-KIEALKKQLEELKAQQD 48 (489)
T ss_pred HHH-HHHHHHHHHHHHHHhhc
Confidence 556 88888888888887776
No 475
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=25.29 E-value=2.7e+02 Score=20.25 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy14403 39 LLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKR 74 (168)
Q Consensus 39 lLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekr 74 (168)
-|..|..+-..||.+|..-+..+...=-.|..+-++
T Consensus 9 ~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~Lnkk 44 (76)
T PF11544_consen 9 ELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKK 44 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888888888877776666556555555
No 476
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=25.27 E-value=82 Score=23.23 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHh
Q psy14403 73 KRVKEMATELTELQGKLSDYNLTMDKV 99 (168)
Q Consensus 73 krae~La~EI~~LQG~LADyNl~~Dk~ 99 (168)
+....|..++..|+++|.+|.-..+.+
T Consensus 39 ~e~~~L~~~~~~l~~~l~~~~~~~~~l 65 (131)
T PF05103_consen 39 RENAELKEEIEELQAQLEELREEEESL 65 (131)
T ss_dssp HHHHHHHHHHHCCCCT-----------
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 334445556666666666665444333
No 477
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=25.22 E-value=2.5e+02 Score=21.56 Aligned_cols=42 Identities=10% Similarity=0.218 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHH
Q psy14403 66 ATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIAD 107 (168)
Q Consensus 66 s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~ 107 (168)
.....++++.+++..++++|+....-....++.+..+.+...
T Consensus 78 ~~~~~l~~k~~~i~~~i~~L~~~~~~L~~~i~~~~~~~~~~~ 119 (131)
T cd04786 78 ELLAALERKVADIEALEARLAQNKAQLLVLIDLIESKPDEMD 119 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 445678899999999999999988888888888876555433
No 478
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=25.16 E-value=3e+02 Score=20.77 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy14403 37 EGLLQLKIRDLTNEITRLKRQIELSAKEHATF 68 (168)
Q Consensus 37 ~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~ 68 (168)
+..|-..+..+..+|..|+.++..+-.+++.+
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L 41 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEENARL 41 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888888888888887777653
No 479
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=25.08 E-value=4.5e+02 Score=22.89 Aligned_cols=60 Identities=20% Similarity=0.329 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHh
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAK----EHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKV 99 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~----e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~ 99 (168)
|..-+.+|...+.+++.+++.... +..-+..|..=++....++..|+..+.+.+.....+
T Consensus 279 l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~ 342 (370)
T PF02181_consen 279 LEQDIKELEKGLEKIKKELEAIEKDEEDDDKFKEKMKEFLEEAETKLDELQELYEELEEAFKQL 342 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555444443 344456666666777777777777766666655555
No 480
>PRK01203 prefoldin subunit alpha; Provisional
Probab=25.03 E-value=2.2e+02 Score=22.53 Aligned_cols=100 Identities=11% Similarity=0.118 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH------------------hHhHHHHHHHHHHhhcCCCH-
Q psy14403 45 RDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTEL------------------QGKLSDYNLTMDKVNTQTNI- 105 (168)
Q Consensus 45 ~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~L------------------QG~LADyNl~~Dk~~t~~d~- 105 (168)
+++..|++-++.|++.++++-+.+..-..++.+-..-|+.+ -|+|.|-+.++=-+.+|.-.
T Consensus 3 ~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~VE 82 (130)
T PRK01203 3 RDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYIA 82 (130)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEEE
Confidence 35566666677777666666666555555555544444443 24455544332222332221
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 106 ADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELE 144 (168)
Q Consensus 106 ~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE 144 (168)
.++..-...|+.+-++..+.+..-...++..+..+..+=
T Consensus 83 K~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~ 121 (130)
T PRK01203 83 EERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY 121 (130)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133344455555555555555555555555555555443
No 481
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=25.00 E-value=5.6e+02 Score=23.79 Aligned_cols=65 Identities=14% Similarity=0.213 Sum_probs=46.2
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhHhHHHH
Q psy14403 28 RQVQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKE-HATFLLYDKRVKEMATELTELQGKLSDY 92 (168)
Q Consensus 28 RQV~DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e-~s~~~~yekrae~La~EI~~LQG~LADy 92 (168)
..-.....-+..+...+.|+..+...|...++.+... ...|..+-....+-..=...|+++|-|+
T Consensus 205 ~~~~~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~ 270 (395)
T PF10267_consen 205 SVSSQQNLGLQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDL 270 (395)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4455677788888999999999999999999988763 3345555555555555566677776654
No 482
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=24.93 E-value=6.4e+02 Score=24.44 Aligned_cols=120 Identities=18% Similarity=0.224 Sum_probs=0.0
Q ss_pred cccccccccCCCCCCCCCC---CCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy14403 3 DSDRLVTQQGLSGLRTGSA---LRGPGFRQVQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMA 79 (168)
Q Consensus 3 v~dRPvTQqGl~G~rt~~~---~~Gp~~RQV~DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La 79 (168)
+.+.|+.--++.||.+.+. +..|..|==.=++||. .||.+|+.+.........-+.. .+..+.+|.+...
T Consensus 382 ~~~e~~~~t~l~gml~~~~~~~~~E~esRE~LIk~~Y~----~RI~eLt~qlQ~adSKa~~f~~---Ec~aL~~rL~~aE 454 (518)
T PF10212_consen 382 SVDEPLQPTSLSGMLTSTSEQESPEEESREQLIKSYYM----SRIEELTSQLQHADSKAVHFYA---ECRALQKRLESAE 454 (518)
T ss_pred ccccccccccccccccccccccCCchhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q ss_pred HHHHHHhHhHHHHHHHHHHhhcCCC------HHHHHHHHHHHHHhcHHHHHHHHHH
Q psy14403 80 TELTELQGKLSDYNLTMDKVNTQTN------IADIEEEYLELRAANDIETRHLEEQ 129 (168)
Q Consensus 80 ~EI~~LQG~LADyNl~~Dk~~t~~d------~~~i~~e~~~Lk~~N~~~~~~ld~i 129 (168)
++-+.+..+|.--|--+-.+..... -+.|-...++|...|++..++=|+|
T Consensus 455 ~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI 510 (518)
T PF10212_consen 455 KEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEI 510 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=24.87 E-value=4.6e+02 Score=24.79 Aligned_cols=41 Identities=22% Similarity=0.299 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q psy14403 53 RLKRQIELSAKE-----HATFLLYDKRVKEMATELTELQGKLSDYN 93 (168)
Q Consensus 53 kL~~e~e~~~~e-----~s~~~~yekrae~La~EI~~LQG~LADyN 93 (168)
||+...+..+++ .++|.+=+--+..+..-|.+|+.+|||.=
T Consensus 24 kl~da~~~~e~dpD~~nk~~~~~R~~~v~~~~~Ki~elkr~lAd~v 69 (428)
T PF00846_consen 24 KLKDAEKQYEKDPDDVNKSTLQQRQSVVSALQDKIAELKRQLADRV 69 (428)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444443 34444445557788888999999999953
No 484
>PF06401 Alpha-2-MRAP_C: Alpha-2-macroglobulin RAP, C-terminal domain ; InterPro: IPR010483 The alpha-2-macroglobulin receptor-associated protein (RAP) is a intracellular glycoprotein that binds to the 2-macroglobulin receptor and other members of the low density lipoprotein receptor family. The protein inhibits binding of all currently known ligands of these receptors []. Two different studies have provided conflicting domain boundaries.; GO: 0008201 heparin binding, 0050750 low-density lipoprotein particle receptor binding, 0005783 endoplasmic reticulum; PDB: 2FCW_A 2P03_A 2FTU_A 2P01_A.
Probab=24.85 E-value=2.7e+02 Score=23.90 Aligned_cols=57 Identities=14% Similarity=0.279 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHhhcC-------CCHHH--------HHHHHHHHHHhcHHHHHHHHHH
Q psy14403 73 KRVKEMATELTELQGKLSDYNLTMDKVNTQ-------TNIAD--------IEEEYLELRAANDIETRHLEEQ 129 (168)
Q Consensus 73 krae~La~EI~~LQG~LADyNl~~Dk~~t~-------~d~~~--------i~~e~~~Lk~~N~~~~~~ld~i 129 (168)
...++|-.|...-|.+...||.+++.+... +.+.+ +....+.|++++.......|+|
T Consensus 24 eEL~~Lk~Ef~hHqeKi~eY~~LL~~~~~~~~~~~N~i~~~~~~~~k~~~~~~k~~~Lk~k~r~i~~~~drL 95 (214)
T PF06401_consen 24 EELDKLKEEFQHHQEKIDEYNSLLETLSRTEEIHENSISPNEMNPEKEEQLHEKHNELKEKHREINDGYDRL 95 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSS---S-TTTT-SSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788899999999999999999888553 22222 3556677888888888877777
No 485
>PRK15325 type III secretion system needle complex protein PrgJ; Provisional
Probab=24.82 E-value=84 Score=23.09 Aligned_cols=22 Identities=45% Similarity=0.529 Sum_probs=19.3
Q ss_pred HHHHHHhHhHHHHHHHHHHhhc
Q psy14403 80 TELTELQGKLSDYNLTMDKVNT 101 (168)
Q Consensus 80 ~EI~~LQG~LADyNl~~Dk~~t 101 (168)
.++-.||..++|||+.|.-+.|
T Consensus 44 ~~Ll~lQ~~~~~Ysl~vslvST 65 (80)
T PRK15325 44 KELAISQEMISDYNLYVSMVST 65 (80)
T ss_pred HHHHHHHHHHHhHhHHHHHHHH
Confidence 5778899999999999988776
No 486
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=24.77 E-value=6.3e+02 Score=24.30 Aligned_cols=111 Identities=18% Similarity=0.249 Sum_probs=63.1
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHH
Q psy14403 37 EGLLQLK--IRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLE 114 (168)
Q Consensus 37 ~glLR~K--i~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~ 114 (168)
-||+|+| |+-+..-..+.+.-+..++-+=+++.-|=.|-..-|.|+.+.=-+|-+-=..|. -.+++.+-.++.
T Consensus 118 SGLvrAKDSItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrkVt-----~SVedaEiKtnv 192 (558)
T PF15358_consen 118 SGLVRAKDSITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRKVT-----RSVEDAEIKTNV 192 (558)
T ss_pred ccceecccchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHhcc
Confidence 3666665 444445555555555555555566666655666666666666667764333332 246777777888
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14403 115 LRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMID 154 (168)
Q Consensus 115 Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~ 154 (168)
|+.--.-..+.+- |..++=+.+..+..|.+++++...-
T Consensus 193 LkqnS~~LEekLr--~lq~qLqdE~prrqe~e~qELeqkl 230 (558)
T PF15358_consen 193 LKQNSALLEEKLR--YLQQQLQDETPRRQEAEWQELEQKL 230 (558)
T ss_pred cccchHHHHHHHH--HHHHHhcccCcchhhhhHHHHHHHH
Confidence 8765555555554 4555545554444555555544433
No 487
>PRK07857 hypothetical protein; Provisional
Probab=24.75 E-value=3.2e+02 Score=20.86 Aligned_cols=34 Identities=18% Similarity=0.054 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy14403 35 YYEGLLQLKIRDLTNEITRLKRQIELSAKEHATF 68 (168)
Q Consensus 35 Yy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~ 68 (168)
+=+.-||.+|.+|-.||=+|-.+--.+..+-+.|
T Consensus 28 ~~L~~lR~eID~ID~eIl~LL~eR~~la~eIg~~ 61 (106)
T PRK07857 28 AEIDELREEIDRLDAEILALVKRRTEVSQAIGKA 61 (106)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456688888888888877766655544444443
No 488
>KOG4196|consensus
Probab=24.56 E-value=1.9e+02 Score=23.19 Aligned_cols=49 Identities=16% Similarity=0.356 Sum_probs=29.7
Q ss_pred ccccchhhhHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy14403 28 RQVQDKRYYEG----------LLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMA 79 (168)
Q Consensus 28 RQV~DksYy~g----------lLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La 79 (168)
|....++|=.+ .|-.+.++|.+|+++|+.|.....++.. .|.-++++|+
T Consensus 57 RTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~d---a~k~k~e~l~ 115 (135)
T KOG4196|consen 57 RTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELD---AYKSKYEALQ 115 (135)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 45555666544 3555666777777777777776666644 3445555554
No 489
>PRK11820 hypothetical protein; Provisional
Probab=24.52 E-value=4.9e+02 Score=22.91 Aligned_cols=72 Identities=17% Similarity=0.212 Sum_probs=47.6
Q ss_pred HHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14403 83 TELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEE--------QFTERSKKQHQLHELEAEIEKLDMID 154 (168)
Q Consensus 83 ~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~--------iF~eR~~~E~~i~~lE~eie~~~~~~ 154 (168)
++|.+.|.-+...++++.. ..|..++.....|+++-......+|. +|.+|-+.-+++-.+..=+.+...+.
T Consensus 155 ~dl~~rl~~i~~~~~~i~~-~~p~~~~~~~~rL~~rl~el~~~~d~~Rl~qEval~adK~DI~EEi~RL~sHl~~f~~~L 233 (288)
T PRK11820 155 ADLLQRLDAIEALVAKIEA-LAPEILEEYRERLRERLEELLGELDENRLEQEVALLAQKADIAEELDRLKSHLKEFREIL 233 (288)
T ss_pred HHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777765 55666666666666665554333443 67788888888888887777766554
Q ss_pred h
Q psy14403 155 I 155 (168)
Q Consensus 155 ~ 155 (168)
.
T Consensus 234 ~ 234 (288)
T PRK11820 234 K 234 (288)
T ss_pred h
Confidence 3
No 490
>PF10752 DUF2533: Protein of unknown function (DUF2533) ; InterPro: IPR019688 This entry represents proteins with unknown function, and appear to be restricted to Bacillus spp.
Probab=24.51 E-value=62 Score=24.01 Aligned_cols=16 Identities=38% Similarity=0.569 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14403 42 LKIRDLTNEITRLKRQ 57 (168)
Q Consensus 42 ~Ki~El~~EI~kL~~e 57 (168)
.+||++|.||+.|.+.
T Consensus 48 d~IN~vT~~mN~LAk~ 63 (84)
T PF10752_consen 48 DKINEVTKEMNELAKQ 63 (84)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 4799999999988764
No 491
>PRK14151 heat shock protein GrpE; Provisional
Probab=24.42 E-value=4e+02 Score=21.82 Aligned_cols=64 Identities=13% Similarity=0.171 Sum_probs=46.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--hHhHHHHHHHHHHh
Q psy14403 33 KRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTEL--QGKLSDYNLTMDKV 99 (168)
Q Consensus 33 ksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~L--QG~LADyNl~~Dk~ 99 (168)
..+..+-|..++.++..|+..++ +.+-+-.+.|..|.||.+.-..++.+. +.=+.|.=-++|.+
T Consensus 18 ~~~~~~~l~~~i~~le~e~~el~---d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~LLpv~Dnl 83 (176)
T PRK14151 18 EAAAGDDLTARVQELEEQLAAAK---DQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPVVDSL 83 (176)
T ss_pred cccchhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 45677888899999999988886 456788889999999998877776653 33444444455544
No 492
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=24.34 E-value=53 Score=24.88 Aligned_cols=79 Identities=19% Similarity=0.184 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 70 LYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEK 149 (168)
Q Consensus 70 ~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~ 149 (168)
...+.+...|.+|...-..|-+.-- .+..|..+...++..-.+....||-|-..-.+.+.-+..+|.+++.
T Consensus 33 ~q~k~F~~qA~~V~~wDr~Lv~n~~---------~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE~~~~~ 103 (116)
T PF05064_consen 33 EQEKEFNEQATQVNAWDRQLVENGE---------KISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLEKQVEK 103 (116)
T ss_dssp ----------------TCHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777777666655432 3445566777778888888899999999999999999988888887
Q ss_pred Hhhhhhhh
Q psy14403 150 LDMIDISM 157 (168)
Q Consensus 150 ~~~~~~~~ 157 (168)
+.....+.
T Consensus 104 l~~~~~~~ 111 (116)
T PF05064_consen 104 LLSNQSSQ 111 (116)
T ss_dssp --------
T ss_pred HHHHHhhh
Confidence 76554443
No 493
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=24.26 E-value=1.6e+02 Score=25.81 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHH
Q psy14403 42 LKIRDLTNEITRLKRQIELSAK-EHATFLLYDKRVKEMATELTEL 85 (168)
Q Consensus 42 ~Ki~El~~EI~kL~~e~e~~~~-e~s~~~~yekrae~La~EI~~L 85 (168)
.++|.+..+|..|.++|....- .......+.-+-+.|..|+.++
T Consensus 166 ~~iN~ll~~Ia~lN~~I~~~~~~~g~~~n~L~DqRD~ll~~LS~~ 210 (322)
T TIGR02492 166 TEINSLLKQIASLNKEIQQVEAKSGQDANDLLDQRDLLLKELSQL 210 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCchHhHHHHHHHHHHHHhH
Confidence 3566677777777777766553 2333334444445555555544
No 494
>PRK15335 type III secretion system protein SpaM; Provisional
Probab=24.18 E-value=2.3e+02 Score=22.90 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=39.3
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy14403 28 RQVQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMA 79 (168)
Q Consensus 28 RQV~DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La 79 (168)
||+.|-..-+--+..|-.++..|-..++++..---+....|..+.++-+.++
T Consensus 80 RQ~~~L~Lq~~~iqEKr~elqkeke~~~k~~~yWLRKe~kY~rW~~~qkr~~ 131 (147)
T PRK15335 80 RQIKDLELQIIQIQEKRSELEKKREEFQKKSKYWLRKEGNYQRWIIRQKRFY 131 (147)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 6777777777777778888888888888887777777778888877655544
No 495
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=24.17 E-value=4.1e+02 Score=22.15 Aligned_cols=35 Identities=11% Similarity=0.092 Sum_probs=28.9
Q ss_pred cCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q psy14403 101 TQTNIADIEEEYLELRAANDIETRHLEEQFTERSK 135 (168)
Q Consensus 101 t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~ 135 (168)
...|++.+...-.++.+.-.++++++|.-+.+-++
T Consensus 71 ~~~dpd~v~~rqEa~eaAR~RmQEE~dakA~~~kE 105 (190)
T PF06936_consen 71 AKKDPDVVVRRQEAMEAARRRMQEELDAKAEEYKE 105 (190)
T ss_dssp HTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999999999988765443
No 496
>KOG4436|consensus
Probab=23.91 E-value=2.1e+02 Score=29.41 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q psy14403 46 DLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNL 94 (168)
Q Consensus 46 El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl 94 (168)
+++.|.+|+..++-.-.= +.+...|+-.+..|..||+.+-| |.|-|.
T Consensus 810 ~~~~emeki~~qvf~mDi-~kql~eykvey~vLq~El~~~~~-~~~~~~ 856 (948)
T KOG4436|consen 810 MEHTEMEKIIKQVFEMDI-SKQLAEYKVEYHVLQEELTTSSH-LEDLNR 856 (948)
T ss_pred hhHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHhccc-hhhccc
Confidence 466788888777654332 33567789999999999999999 888887
No 497
>PF08930 DUF1912: Domain of unknown function (DUF1912); InterPro: IPR015026 This protein has no known function. It is found in various Streptococcal proteins. ; PDB: 1Z0P_A.
Probab=23.90 E-value=3e+02 Score=20.30 Aligned_cols=49 Identities=16% Similarity=0.413 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q psy14403 41 QLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYN 93 (168)
Q Consensus 41 R~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyN 93 (168)
+-.||++-.+.++---+.+.-++....|..||.|.++ -+=|||+.+.|.
T Consensus 18 Qi~ine~Am~~s~kv~eeD~derAkdA~iRYESkLDA----Y~Fl~gKF~Ny~ 66 (84)
T PF08930_consen 18 QIQINEMAMKESQKVAEEDGDERAKDAYIRYESKLDA----YQFLQGKFENYK 66 (84)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhhH----HHHHHHHHhhhh
No 498
>KOG0517|consensus
Probab=23.80 E-value=1.2e+03 Score=27.01 Aligned_cols=114 Identities=16% Similarity=0.198 Sum_probs=0.0
Q ss_pred ccchhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh---------HHHHHHHHH
Q psy14403 30 VQDKRYYEGLLQLKIRDLTN---EITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGK---------LSDYNLTMD 97 (168)
Q Consensus 30 V~DksYy~glLR~Ki~El~~---EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~---------LADyNl~~D 97 (168)
|..|.||.+.+..|+.+|.. |.++...+.-..=.+.+.-..+-+...++-+=+.+|+++ |...|.++-
T Consensus 1336 ~~ekpe~~~~V~~kl~~L~~~W~~Le~~t~~Kg~~L~qA~~q~~~~qs~~D~~~~l~~le~qL~S~D~G~DL~Svn~llk 1415 (2473)
T KOG0517|consen 1336 VSEKPELKALVEKKLRELHKQWDELEKTTQEKGRKLFQANRQELLLQSLADAKKKLDELESQLQSDDTGKDLTSVNDLLK 1415 (2473)
T ss_pred HhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHH
Q ss_pred Hhhc-CCCHHHHHHHHHHHHHhcHHHHHHH---HHHHHHHHHHHHHHHHH
Q psy14403 98 KVNT-QTNIADIEEEYLELRAANDIETRHL---EEQFTERSKKQHQLHEL 143 (168)
Q Consensus 98 k~~t-~~d~~~i~~e~~~Lk~~N~~~~~~l---d~iF~eR~~~E~~i~~l 143 (168)
|... ...|..-.++..+|..+...++..- ++|-..+..+.+....|
T Consensus 1416 Kqq~lEsem~~~~~kv~el~s~~~~ma~~~~~a~~I~~~~~~v~~Rf~~L 1465 (2473)
T KOG0517|consen 1416 KQQVLESEMEVRAQKVAELQSQAKAMAEEGHSAENIEETTLAVLERFEDL 1465 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhccCcchhhHHHHHHHHHHHHHHH
No 499
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=23.74 E-value=1.9e+02 Score=19.87 Aligned_cols=31 Identities=10% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc
Q psy14403 71 YDKRVKEMATELTELQGKLSDYNLTMDKVNT 101 (168)
Q Consensus 71 yekrae~La~EI~~LQG~LADyNl~~Dk~~t 101 (168)
++-...+|+.++.+|+..+.+.|.+=+.+..
T Consensus 3 l~~~f~eL~D~~~~L~~n~~~L~~ihesL~~ 33 (58)
T PF08653_consen 3 LEPQFAELSDSMETLDKNMEQLNQIHESLSD 33 (58)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=23.74 E-value=2.5e+02 Score=19.17 Aligned_cols=73 Identities=19% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 67 TFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAE 146 (168)
Q Consensus 67 ~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~e 146 (168)
....|=..++++...|..++..+.....+-.+.-+.++.+ ..++..-+....++...| ......|+.|+..
T Consensus 1 ~~~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d------~~~~~el~~l~~~i~~~~---~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 1 FMPEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQD------SELKRELDELTDEIKQLF---QKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHH------HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc------hhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q ss_pred HH
Q psy14403 147 IE 148 (168)
Q Consensus 147 ie 148 (168)
..
T Consensus 72 ~~ 73 (103)
T PF00804_consen 72 NE 73 (103)
T ss_dssp HH
T ss_pred hh
Done!