Query psy14403
Match_columns 168
No_of_seqs 63 out of 65
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 18:59:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14403.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14403hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na7_A HP0958; flagellar bioge 97.0 0.073 2.5E-06 43.8 17.3 113 40-152 23-139 (256)
2 2dfs_A Myosin-5A; myosin-V, in 96.4 0.052 1.8E-06 53.5 13.9 91 46-136 957-1049(1080)
3 1c1g_A Tropomyosin; contractIl 95.6 0.51 1.8E-05 35.8 16.2 22 40-61 4-25 (284)
4 3oja_B Anopheles plasmodium-re 95.3 0.7 2.4E-05 40.9 15.3 27 40-66 454-480 (597)
5 2fxo_A Myosin heavy chain, car 95.3 0.65 2.2E-05 34.8 16.0 103 45-152 16-125 (129)
6 2v71_A Nuclear distribution pr 94.4 0.47 1.6E-05 38.5 10.8 106 40-149 61-172 (189)
7 3mq9_A Bone marrow stromal ant 94.4 1.6 5.5E-05 37.7 14.9 97 44-152 375-471 (471)
8 2dfs_A Myosin-5A; myosin-V, in 94.3 0.33 1.1E-05 47.9 11.5 22 45-66 924-945 (1080)
9 2v66_B Nuclear distribution pr 94.3 1 3.5E-05 33.7 11.7 89 39-127 7-101 (111)
10 3swk_A Vimentin; cytoskeleton, 93.7 0.63 2.1E-05 32.9 9.2 32 121-152 53-84 (86)
11 1c1g_A Tropomyosin; contractIl 93.2 2.1 7.1E-05 32.4 16.9 27 120-146 233-259 (284)
12 1i84_S Smooth muscle myosin he 92.9 0.32 1.1E-05 47.9 8.7 11 81-91 921-931 (1184)
13 1i84_S Smooth muscle myosin he 92.9 0.52 1.8E-05 46.4 10.1 9 48-56 863-871 (1184)
14 3oja_B Anopheles plasmodium-re 92.6 4.5 0.00016 35.6 15.0 41 109-149 536-576 (597)
15 3na7_A HP0958; flagellar bioge 92.3 3.9 0.00013 33.3 16.3 68 64-133 88-155 (256)
16 3ghg_A Fibrinogen alpha chain; 91.9 2.5 8.6E-05 39.2 12.7 99 36-151 51-151 (562)
17 2zqm_A Prefoldin beta subunit 91.5 2.7 9.3E-05 29.8 13.2 90 63-152 10-112 (117)
18 3ol1_A Vimentin; structural ge 91.2 3.5 0.00012 30.5 12.3 85 37-154 22-106 (119)
19 2efr_A General control protein 90.5 5.2 0.00018 31.3 16.3 108 41-153 41-155 (155)
20 3i00_A HIP-I, huntingtin-inter 90.1 1.4 4.6E-05 33.2 7.7 97 43-151 16-112 (120)
21 1t3j_A Mitofusin 1; coiled coi 89.5 1.5 5E-05 32.1 7.2 48 40-87 45-92 (96)
22 3vkg_A Dynein heavy chain, cyt 88.3 14 0.00049 40.7 16.5 109 40-150 1981-2103(3245)
23 3qh9_A Liprin-beta-2; coiled-c 88.1 4.9 0.00017 28.6 8.9 57 42-101 19-75 (81)
24 3bas_A Myosin heavy chain, str 87.9 5.4 0.00018 28.0 10.8 71 45-148 17-87 (89)
25 2ke4_A CDC42-interacting prote 87.6 3.4 0.00012 30.0 8.1 32 38-69 18-49 (98)
26 2jee_A YIIU; FTSZ, septum, coi 87.2 6.2 0.00021 27.9 10.3 63 37-99 8-74 (81)
27 1l8d_A DNA double-strand break 87.1 6.2 0.00021 27.9 12.7 45 104-148 58-102 (112)
28 1fxk_A Prefoldin; archaeal pro 86.3 6.6 0.00023 27.3 12.2 87 62-148 4-103 (107)
29 4aj5_1 SKA3, spindle and kinet 86.2 8.3 0.00028 28.4 10.7 91 35-131 6-98 (101)
30 3hnw_A Uncharacterized protein 86.0 9.7 0.00033 28.9 10.6 42 108-149 94-135 (138)
31 2jee_A YIIU; FTSZ, septum, coi 85.9 7.1 0.00024 27.6 8.8 45 107-151 24-68 (81)
32 3ol1_A Vimentin; structural ge 84.9 9.7 0.00033 28.0 12.6 9 53-61 24-32 (119)
33 2eqb_B RAB guanine nucleotide 84.4 7.1 0.00024 28.5 8.4 80 68-149 14-94 (97)
34 3q8t_A Beclin-1; autophagy, AT 84.1 4.1 0.00014 29.2 7.0 63 102-164 3-65 (96)
35 1l8d_A DNA double-strand break 83.3 9.8 0.00034 26.8 9.5 27 70-96 68-94 (112)
36 2fxo_A Myosin heavy chain, car 83.2 12 0.00041 27.7 12.5 80 38-129 37-116 (129)
37 1deq_A Fibrinogen (alpha chain 83.1 25 0.00085 31.4 13.7 43 36-78 54-96 (390)
38 2k48_A Nucleoprotein; viral pr 78.8 8 0.00027 28.8 7.0 59 34-92 24-101 (107)
39 3a7p_A Autophagy protein 16; c 78.2 23 0.00077 27.8 11.0 112 24-139 20-142 (152)
40 3oja_A Leucine-rich immune mol 78.2 33 0.0011 29.6 12.6 31 119-149 437-467 (487)
41 1go4_E MAD1 (mitotic arrest de 77.9 17 0.00057 26.6 8.5 19 107-125 72-90 (100)
42 3l4f_A RHO guanine nucleotide 77.5 11 0.00037 25.4 6.8 44 105-148 9-52 (61)
43 2w6b_A RHO guanine nucleotide 77.1 9.4 0.00032 25.3 6.2 39 105-143 12-50 (56)
44 3s9g_A Protein hexim1; cyclin 76.9 14 0.00047 27.3 7.8 51 102-152 29-79 (104)
45 2oto_A M protein; helical coil 76.3 23 0.00077 26.8 13.9 18 39-56 26-43 (155)
46 2dq0_A Seryl-tRNA synthetase; 76.0 7.9 0.00027 34.5 7.6 60 40-99 43-102 (455)
47 3qne_A Seryl-tRNA synthetase, 75.9 8.9 0.0003 34.8 7.9 59 40-98 45-103 (485)
48 3hnw_A Uncharacterized protein 75.8 23 0.0008 26.8 9.7 42 109-150 88-129 (138)
49 3trt_A Vimentin; cytoskeleton, 75.8 15 0.00051 24.5 8.1 60 105-164 11-75 (77)
50 3vkg_A Dynein heavy chain, cyt 75.6 1.1E+02 0.0036 34.2 17.1 51 105-155 2030-2080(3245)
51 2e7s_A RAB guanine nucleotide 73.6 23 0.00077 27.2 8.6 21 134-154 113-133 (135)
52 2zdi_C Prefoldin subunit alpha 73.2 26 0.0009 26.1 10.0 89 65-153 15-141 (151)
53 3nmd_A CGMP dependent protein 72.1 11 0.00038 26.1 5.9 27 65-91 39-65 (72)
54 2nrj_A HBL B protein; enteroto 72.0 11 0.00036 32.5 7.2 74 36-109 220-307 (346)
55 1wle_A Seryl-tRNA synthetase; 70.9 26 0.00089 31.7 9.8 32 59-90 70-101 (501)
56 3tnu_A Keratin, type I cytoske 70.1 30 0.001 25.5 9.1 33 108-140 89-121 (131)
57 3bas_A Myosin heavy chain, str 69.8 24 0.00082 24.6 7.4 29 68-96 58-86 (89)
58 3kqg_A Langerin, C-type lectin 69.8 8.9 0.00031 28.4 5.5 49 53-101 3-51 (182)
59 2ocy_A RAB guanine nucleotide 68.7 39 0.0013 26.3 15.4 30 128-157 119-148 (154)
60 3tnu_B Keratin, type II cytosk 68.7 32 0.0011 25.2 10.0 33 108-140 87-119 (129)
61 3u59_A Tropomyosin beta chain; 68.5 28 0.00097 24.6 7.8 49 103-151 2-50 (101)
62 2lw1_A ABC transporter ATP-bin 67.9 23 0.00078 24.5 7.0 57 69-135 25-81 (89)
63 2ocy_A RAB guanine nucleotide 67.4 42 0.0014 26.1 10.2 110 47-158 25-135 (154)
64 2ke4_A CDC42-interacting prote 67.0 11 0.00039 27.1 5.3 60 42-101 15-76 (98)
65 3u1c_A Tropomyosin alpha-1 cha 65.6 34 0.0012 24.4 15.6 51 37-90 4-54 (101)
66 3tnu_B Keratin, type II cytosk 65.1 38 0.0013 24.8 11.1 9 43-51 16-24 (129)
67 1lq7_A Alpha3W; three helix bu 64.1 16 0.00054 24.4 5.2 49 96-149 18-66 (67)
68 1t3j_A Mitofusin 1; coiled coi 63.5 25 0.00085 25.5 6.6 56 34-92 35-90 (96)
69 3m9b_A Proteasome-associated A 63.4 6.4 0.00022 33.1 3.9 73 76-152 20-96 (251)
70 3ni0_A Bone marrow stromal ant 63.3 15 0.00053 26.8 5.4 35 59-93 53-87 (99)
71 1uii_A Geminin; human, DNA rep 63.2 37 0.0013 24.1 7.5 53 33-85 27-82 (83)
72 2lf0_A Uncharacterized protein 63.0 20 0.00069 27.2 6.2 43 47-89 8-59 (123)
73 1ses_A Seryl-tRNA synthetase; 62.3 16 0.00056 32.0 6.5 57 40-98 40-96 (421)
74 3iox_A AGI/II, PA; alpha helix 62.3 42 0.0015 30.8 9.3 53 44-96 36-89 (497)
75 3o0z_A RHO-associated protein 62.2 57 0.0019 25.8 16.2 41 107-147 94-134 (168)
76 3u59_A Tropomyosin beta chain; 61.3 40 0.0014 23.8 15.6 51 37-90 4-54 (101)
77 2p2u_A HOST-nuclease inhibitor 60.9 41 0.0014 26.0 8.0 64 30-96 12-75 (171)
78 3qne_A Seryl-tRNA synthetase, 60.5 11 0.00039 34.1 5.3 14 40-53 52-65 (485)
79 1a93_B MAX protein, coiled coi 60.3 16 0.00055 21.9 4.2 26 39-64 4-29 (34)
80 3lss_A Seryl-tRNA synthetase; 59.9 38 0.0013 30.7 8.6 22 75-96 113-134 (484)
81 1fxk_C Protein (prefoldin); ar 59.8 46 0.0016 24.0 12.4 87 66-152 8-130 (133)
82 4i0x_B ESAT-6-like protein MAB 59.2 40 0.0014 23.2 10.5 68 37-104 20-91 (103)
83 1pwb_A SP-D, PSP-D, pulmonary 59.0 9.1 0.00031 28.5 3.8 23 40-62 29-51 (177)
84 1wt6_A Myotonin-protein kinase 57.9 47 0.0016 23.5 7.5 47 105-151 26-72 (81)
85 3s4r_A Vimentin; alpha-helix, 56.6 49 0.0017 23.3 11.7 77 65-152 15-91 (93)
86 3oja_A Leucine-rich immune mol 56.5 95 0.0033 26.6 16.0 87 70-156 364-467 (487)
87 3nmd_A CGMP dependent protein 56.1 47 0.0016 22.9 7.3 37 67-103 34-70 (72)
88 2nrj_A HBL B protein; enteroto 55.6 97 0.0033 26.4 11.8 87 32-118 76-191 (346)
89 4fi5_A Nucleoprotein; structur 55.5 62 0.0021 24.1 9.3 70 22-94 16-90 (113)
90 1ci6_A Transcription factor AT 55.4 38 0.0013 22.1 5.9 38 117-154 23-60 (63)
91 4etp_A Kinesin-like protein KA 55.3 43 0.0015 29.2 8.0 16 43-58 4-19 (403)
92 2eqb_B RAB guanine nucleotide 55.0 58 0.002 23.6 12.8 80 37-128 14-94 (97)
93 1pwb_A SP-D, PSP-D, pulmonary 55.0 13 0.00045 27.6 4.1 8 155-162 111-118 (177)
94 4e61_A Protein BIM1; EB1-like 54.4 62 0.0021 23.8 9.2 48 38-85 14-61 (106)
95 1wle_A Seryl-tRNA synthetase; 53.3 57 0.002 29.5 8.6 58 41-98 83-148 (501)
96 1s94_A S-syntaxin; three helix 53.3 67 0.0023 24.3 7.9 68 30-97 30-105 (180)
97 3s9g_A Protein hexim1; cyclin 52.7 27 0.00091 25.8 5.2 50 67-125 38-87 (104)
98 1jcd_A Major outer membrane li 52.6 44 0.0015 21.6 7.6 22 42-63 4-25 (52)
99 3a2a_A Voltage-gated hydrogen 52.1 29 0.001 23.0 4.8 38 110-154 11-48 (58)
100 3tnu_A Keratin, type I cytoske 51.2 70 0.0024 23.4 9.9 12 42-53 17-28 (131)
101 2v71_A Nuclear distribution pr 50.8 94 0.0032 24.9 16.3 92 33-124 12-109 (189)
102 1wlq_A Geminin; coiled-coil; 2 50.6 64 0.0022 22.8 7.0 55 33-87 19-76 (83)
103 3caz_A BAR protein; thermo-aci 49.8 1.1E+02 0.0037 25.4 9.0 44 37-80 100-143 (294)
104 1nkp_B MAX protein, MYC proto- 49.7 30 0.001 23.4 4.9 29 34-62 46-74 (83)
105 2yy0_A C-MYC-binding protein; 49.1 14 0.00048 23.8 2.9 26 103-128 19-44 (53)
106 3qh9_A Liprin-beta-2; coiled-c 49.0 67 0.0023 22.6 8.3 51 37-90 28-78 (81)
107 1fio_A SSO1 protein; four heli 48.9 83 0.0028 23.7 15.1 34 126-163 157-190 (196)
108 2dq3_A Seryl-tRNA synthetase; 48.8 8.5 0.00029 33.9 2.4 25 73-97 75-99 (425)
109 1jnm_A Proto-oncogene C-JUN; B 48.7 28 0.00096 22.5 4.4 24 36-59 23-46 (62)
110 3fav_B ESAT-6, 6 kDa early sec 48.6 55 0.0019 21.6 7.9 66 38-103 15-82 (94)
111 1nlw_A MAD protein, MAX dimeri 48.5 32 0.0011 23.6 4.9 35 30-64 42-76 (80)
112 3iox_A AGI/II, PA; alpha helix 48.5 1.4E+02 0.0047 27.4 10.3 13 89-101 68-80 (497)
113 4fla_A Regulation of nuclear P 47.9 91 0.0031 23.9 11.4 77 73-151 68-144 (152)
114 1lrz_A FEMA, factor essential 47.5 74 0.0025 27.2 8.1 64 31-94 220-302 (426)
115 2ic9_A Nucleocapsid protein; h 47.3 79 0.0027 22.9 7.8 43 52-94 26-73 (96)
116 2lw1_A ABC transporter ATP-bin 47.2 54 0.0019 22.5 6.0 56 33-91 16-74 (89)
117 3ra3_B P2F; coiled coil domain 46.7 23 0.0008 20.0 3.2 23 39-61 4-26 (28)
118 2wt7_A Proto-oncogene protein 46.3 58 0.002 21.1 5.9 14 77-90 41-54 (63)
119 3he5_B Synzip2; heterodimeric 46.1 55 0.0019 20.8 6.1 40 49-91 10-49 (52)
120 3d5a_X RF1, peptide chain rele 45.9 88 0.003 27.4 8.3 92 42-149 3-94 (354)
121 3lss_A Seryl-tRNA synthetase; 45.6 57 0.0019 29.5 7.3 18 73-90 118-135 (484)
122 3mq7_A Bone marrow stromal ant 45.6 59 0.002 24.5 6.2 40 58-100 59-98 (121)
123 2p22_C Protein SRN2; endosome, 45.4 1.1E+02 0.0038 24.2 11.7 108 25-132 30-153 (192)
124 4dzn_A Coiled-coil peptide CC- 45.4 44 0.0015 19.5 4.7 15 45-59 5-19 (33)
125 2ic6_A Nucleocapsid protein; h 44.9 77 0.0026 22.1 7.8 41 52-92 26-71 (78)
126 1m1j_A Fibrinogen alpha subuni 44.7 1.9E+02 0.0064 26.5 10.5 81 70-150 55-151 (491)
127 1ez3_A Syntaxin-1A; three heli 44.4 79 0.0027 22.2 13.9 65 34-98 4-75 (127)
128 1go4_E MAD1 (mitotic arrest de 44.4 88 0.003 22.7 7.5 81 66-155 12-92 (100)
129 1wlq_A Geminin; coiled-coil; 2 44.0 65 0.0022 22.8 5.9 45 43-87 39-83 (83)
130 2zvf_A Alanyl-tRNA synthetase; 43.8 5.9 0.0002 29.8 0.5 17 102-118 81-97 (171)
131 2b5u_A Colicin E3; high resolu 43.5 2E+02 0.0069 26.6 13.9 53 100-152 399-451 (551)
132 1gqe_A Release factor 2, RF2; 43.2 1.7E+02 0.0058 25.6 12.7 18 134-151 97-114 (365)
133 4h22_A Leucine-rich repeat fli 43.1 96 0.0033 22.7 8.5 54 34-90 29-82 (103)
134 3viq_A SWI5-dependent recombin 42.9 81 0.0028 23.4 6.7 25 40-64 5-29 (122)
135 2qyw_A Vesicle transport throu 42.8 72 0.0025 22.6 6.2 78 65-152 14-99 (102)
136 2yy0_A C-MYC-binding protein; 42.4 33 0.0011 22.0 3.9 22 40-61 24-45 (53)
137 3fav_B ESAT-6, 6 kDa early sec 42.2 71 0.0024 21.0 7.5 63 67-129 6-71 (94)
138 2xdj_A Uncharacterized protein 42.1 85 0.0029 21.8 7.7 36 64-99 18-53 (83)
139 1lwu_C Fibrinogen gamma chain; 42.1 86 0.003 26.9 7.6 48 42-92 5-52 (323)
140 1ic2_A Tropomyosin alpha chain 41.8 78 0.0027 21.3 10.2 48 39-89 3-50 (81)
141 4abx_A DNA repair protein RECN 41.3 1.1E+02 0.0039 23.1 10.9 84 61-149 82-168 (175)
142 1uii_A Geminin; human, DNA rep 41.2 69 0.0024 22.7 5.7 34 118-151 33-66 (83)
143 3sja_C Golgi to ER traffic pro 40.7 76 0.0026 21.4 5.6 51 43-93 7-59 (65)
144 4emc_A Monopolin complex subun 40.4 1.4E+02 0.0049 24.0 8.7 60 44-115 22-81 (190)
145 2w83_C C-JUN-amino-terminal ki 40.4 92 0.0032 21.7 8.7 45 105-149 32-76 (77)
146 2gd5_A Charged multivesicular 39.9 1.2E+02 0.0042 23.1 9.6 97 34-130 13-144 (179)
147 3m48_A General control protein 38.9 48 0.0016 19.7 3.9 25 70-94 4-28 (33)
148 2no2_A HIP-I, huntingtin-inter 38.9 1.1E+02 0.0037 22.1 12.8 80 44-138 24-103 (107)
149 2bnx_A Diaphanous protein homo 38.7 2.1 7E-05 37.2 -3.2 35 113-147 336-370 (386)
150 2zqm_A Prefoldin beta subunit 38.7 96 0.0033 21.4 10.0 35 28-62 6-40 (117)
151 1fxk_A Prefoldin; archaeal pro 38.7 92 0.0031 21.2 10.4 70 30-99 3-98 (107)
152 4ioe_A Secreted protein ESXB; 38.0 83 0.0028 20.5 8.1 63 38-100 19-83 (93)
153 2oqq_A Transcription factor HY 37.8 74 0.0025 19.9 5.9 36 35-70 3-38 (42)
154 3u1c_A Tropomyosin alpha-1 cha 37.7 1.1E+02 0.0036 21.7 7.5 42 105-146 4-45 (101)
155 1uo4_A General control protein 37.5 57 0.0019 19.5 4.0 27 69-95 4-30 (34)
156 1x4t_A Hypothetical protein LO 37.2 22 0.00074 25.7 2.6 16 43-58 53-68 (92)
157 3mq9_A Bone marrow stromal ant 37.1 1.9E+02 0.0066 24.5 14.1 92 50-153 374-465 (471)
158 2pms_C Pneumococcal surface pr 37.0 60 0.0021 24.6 5.2 54 71-129 66-122 (125)
159 2d4y_A HAP1, flagellar HOOK-as 36.9 2.1E+02 0.0071 24.8 11.0 72 38-115 67-141 (463)
160 3u06_A Protein claret segregat 36.4 1.3E+02 0.0046 26.2 8.1 49 104-152 4-52 (412)
161 2wvr_A Geminin; DNA replicatio 36.0 1.8E+02 0.0061 23.8 8.5 55 33-87 96-153 (209)
162 1dh3_A Transcription factor CR 35.9 60 0.002 20.7 4.4 27 35-61 22-48 (55)
163 2pms_C Pneumococcal surface pr 35.6 1.4E+02 0.0048 22.5 8.9 28 39-66 10-37 (125)
164 2zxx_A Geminin; coiled-coil, c 35.6 1.1E+02 0.0038 21.3 6.0 56 33-88 15-73 (79)
165 1wlx_A Alpha-actinin 4; three- 35.5 1.4E+02 0.0048 22.4 7.1 75 49-126 45-121 (129)
166 4ioe_A Secreted protein ESXB; 35.3 92 0.0031 20.3 7.1 62 68-129 11-75 (93)
167 2p4v_A Transcription elongatio 35.0 88 0.003 23.7 6.0 27 64-90 44-70 (158)
168 3ghg_A Fibrinogen alpha chain; 34.3 78 0.0027 29.4 6.4 17 76-92 60-76 (562)
169 1a93_B MAX protein, coiled coi 34.3 60 0.0021 19.4 3.8 15 110-124 14-28 (34)
170 3sjb_C Golgi to ER traffic pro 34.2 1.3E+02 0.0044 21.6 7.5 59 43-101 24-84 (93)
171 3lay_A Zinc resistance-associa 33.5 1.7E+02 0.0058 22.8 8.4 16 101-116 108-123 (175)
172 3h6p_C ESAT-6-like protein ESX 33.2 91 0.0031 20.8 5.2 22 78-99 58-79 (96)
173 2oto_A M protein; helical coil 32.9 1.5E+02 0.0052 22.1 14.3 47 44-93 24-70 (155)
174 1buu_A Protein (mannose-bindin 32.7 31 0.0011 25.4 3.0 23 40-62 21-43 (168)
175 1rh1_A Colicin B; FEPA, cytoto 32.5 3E+02 0.01 25.3 10.2 51 71-121 344-402 (511)
176 2yxy_A Hypothetical conserved 32.0 72 0.0025 23.8 4.8 32 44-75 16-49 (115)
177 3u06_A Protein claret segregat 32.0 1.2E+02 0.004 26.6 7.0 45 40-87 15-59 (412)
178 2oie_A RS21-C6; helix, hydrola 31.7 1.2E+02 0.0039 21.1 5.8 26 84-109 76-103 (111)
179 2e7s_A RAB guanine nucleotide 31.7 35 0.0012 26.2 3.1 109 46-156 12-121 (135)
180 1jnm_A Proto-oncogene C-JUN; B 30.9 98 0.0033 19.8 4.8 31 123-153 28-58 (62)
181 1sf9_A YFHH hypothetical prote 30.7 72 0.0025 24.3 4.6 30 46-75 36-67 (128)
182 2wvr_A Geminin; DNA replicatio 30.2 1.5E+02 0.0052 24.2 6.8 48 43-90 116-163 (209)
183 2wq1_A General control protein 30.0 90 0.0031 18.5 4.6 17 40-56 5-21 (33)
184 3gwk_C SAG1039, putative uncha 29.8 1.2E+02 0.0041 20.0 11.9 63 70-132 12-77 (98)
185 3vmx_A Voltage-gated hydrogen 29.7 1.1E+02 0.0038 19.5 5.7 40 110-156 4-43 (48)
186 1wt6_A Myotonin-protein kinase 29.3 1.5E+02 0.0051 20.8 8.6 50 42-91 14-70 (81)
187 1t2k_D Cyclic-AMP-dependent tr 29.2 1.1E+02 0.0038 19.4 5.8 32 122-153 27-58 (61)
188 2wt7_A Proto-oncogene protein 29.0 1.2E+02 0.004 19.6 6.0 26 127-152 33-58 (63)
189 2wt7_B Transcription factor MA 28.7 1.1E+02 0.0037 21.8 5.1 19 44-62 57-75 (90)
190 2ve7_A Kinetochore protein HEC 28.5 1.1E+02 0.0038 25.7 6.0 17 45-61 188-204 (315)
191 3d2f_A Heat shock protein homo 28.4 3.5E+02 0.012 24.8 9.9 49 103-155 601-649 (675)
192 2vs0_A Virulence factor ESXA; 28.4 1.2E+02 0.0042 19.6 8.8 30 69-98 49-78 (97)
193 1ci6_A Transcription factor AT 28.2 1.2E+02 0.0042 19.6 5.9 14 74-87 45-58 (63)
194 1ses_A Seryl-tRNA synthetase; 27.9 2.5E+02 0.0085 24.4 8.4 70 66-150 28-97 (421)
195 1jcd_A Major outer membrane li 27.4 1.3E+02 0.0043 19.3 5.2 19 110-128 32-50 (52)
196 2wg5_A General control protein 27.3 69 0.0024 22.9 3.9 26 38-63 10-35 (109)
197 1gd2_E Transcription factor PA 27.0 1.1E+02 0.0038 20.6 4.7 18 109-126 49-66 (70)
198 1zme_C Proline utilization tra 26.4 61 0.0021 20.4 3.2 21 36-56 45-65 (70)
199 3gp4_A Transcriptional regulat 26.4 1.9E+02 0.0066 21.1 6.4 42 36-77 82-123 (142)
200 1hlo_A Protein (transcription 25.7 60 0.0021 21.7 3.2 24 34-57 56-79 (80)
201 2ve7_A Kinetochore protein HEC 25.3 1.5E+02 0.0052 24.8 6.3 17 48-64 184-200 (315)
202 3fhn_A Protein transport prote 25.2 2E+02 0.0068 27.3 7.6 45 39-83 14-58 (706)
203 3rrk_A V-type ATPase 116 kDa s 25.1 1.9E+02 0.0067 23.7 6.9 39 113-151 95-136 (357)
204 1nkp_A C-MYC, MYC proto-oncoge 25.0 1.6E+02 0.0055 20.2 5.4 16 72-87 72-87 (88)
205 1grj_A GREA protein; transcrip 25.0 1.8E+02 0.006 21.9 6.1 29 64-92 44-72 (158)
206 3viq_B Mating-type switching p 24.9 1.8E+02 0.0063 20.4 8.6 23 40-62 6-28 (85)
207 1xaw_A Occludin; coiled-coil, 24.4 2.1E+02 0.0072 21.9 6.4 53 40-92 64-135 (140)
208 1am9_A Srebp-1A, protein (ster 24.2 1.2E+02 0.0042 20.4 4.6 31 31-61 46-76 (82)
209 3g9r_A Fusion complex of HIV-1 24.2 61 0.0021 20.1 2.6 18 38-55 24-41 (42)
210 2ve7_C Kinetochore protein NUF 24.0 64 0.0022 26.4 3.6 14 151-164 189-202 (250)
211 3uul_A Utrophin; spectrin repe 23.9 1.6E+02 0.0056 19.5 13.7 38 64-101 34-71 (118)
212 4e81_A Chaperone protein DNAK; 23.8 2.7E+02 0.0092 21.9 7.9 7 13-19 71-77 (219)
213 2dgc_A Protein (GCN4); basic d 23.7 1.5E+02 0.005 19.3 4.7 18 73-90 44-61 (63)
214 2pnv_A Small conductance calci 23.1 1.2E+02 0.004 18.8 3.9 22 74-95 17-38 (43)
215 3lay_A Zinc resistance-associa 22.9 2.7E+02 0.0093 21.6 10.4 19 73-91 113-131 (175)
216 1ic2_A Tropomyosin alpha chain 22.9 1.8E+02 0.006 19.5 6.6 23 72-94 5-27 (81)
217 1z0p_A Hypothetical protein SP 22.8 2E+02 0.0069 20.2 5.7 48 42-93 19-66 (84)
218 1gd2_E Transcription factor PA 22.6 92 0.0031 21.0 3.6 19 73-91 50-68 (70)
219 1zbt_A RF-1, peptide chain rel 22.6 1.9E+02 0.0065 25.4 6.5 27 72-98 42-68 (371)
220 3rrk_A V-type ATPase 116 kDa s 22.5 2.8E+02 0.0094 22.8 7.3 33 32-64 223-255 (357)
221 2zvf_A Alanyl-tRNA synthetase; 22.3 71 0.0024 23.7 3.3 27 122-148 30-56 (171)
222 2z5i_A TM, general control pro 22.2 73 0.0025 20.3 2.9 16 116-131 32-47 (52)
223 4i0x_B ESAT-6-like protein MAB 22.0 1.9E+02 0.0065 19.6 8.9 36 67-102 12-47 (103)
224 4etp_A Kinesin-like protein KA 22.0 2.8E+02 0.0097 23.9 7.6 11 140-150 47-57 (403)
225 3fpp_A Macrolide-specific effl 22.0 3.1E+02 0.01 21.9 7.8 17 41-57 68-84 (341)
226 3mtu_A Tropomyosin alpha-1 cha 22.0 1.9E+02 0.0064 19.5 7.6 45 37-81 4-48 (75)
227 4b4t_M 26S protease regulatory 21.9 1.2E+02 0.004 26.7 5.1 48 106-153 28-75 (434)
228 3tq7_B Microtubule-associated 21.8 1.1E+02 0.0037 21.4 3.9 41 43-83 2-42 (82)
229 1r8e_A Multidrug-efflux transp 21.7 2E+02 0.007 22.3 6.1 35 66-100 79-113 (278)
230 3viq_B Mating-type switching p 21.6 2.2E+02 0.0074 20.1 6.4 18 45-62 4-21 (85)
231 2yko_A LINE-1 ORF1P; RNA-bindi 21.5 2.9E+02 0.0098 22.8 7.1 45 102-146 5-49 (233)
232 2j5u_A MREC protein; bacterial 21.1 50 0.0017 27.0 2.4 33 48-87 25-57 (255)
233 3edu_A Beta-I spectrin, spectr 20.7 2.7E+02 0.0093 20.8 12.4 51 65-115 33-86 (218)
234 3d5a_X RF1, peptide chain rele 20.7 2.3E+02 0.008 24.6 6.7 79 74-152 4-90 (354)
235 2v66_B Nuclear distribution pr 20.7 2.5E+02 0.0087 20.5 15.3 81 42-137 3-83 (111)
236 4b4t_J 26S protease regulatory 20.6 1.4E+02 0.0049 26.1 5.4 48 33-87 20-67 (405)
237 3kqg_A Langerin, C-type lectin 20.4 1.5E+02 0.0052 21.5 4.8 38 47-84 4-41 (182)
238 4b6x_A AVRRPS4, avirulence pro 20.4 2.4E+02 0.0081 20.0 8.7 56 38-93 25-82 (90)
239 1x8y_A Lamin A/C; structural p 20.3 2.1E+02 0.0073 19.5 6.5 32 109-140 41-72 (86)
240 4gyx_A Type III collagen fragm 20.2 62 0.0021 18.6 2.0 19 7-25 8-26 (31)
241 2dq0_A Seryl-tRNA synthetase; 20.1 4.5E+02 0.015 23.1 12.6 72 66-151 31-103 (455)
No 1
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.01 E-value=0.073 Score=43.79 Aligned_cols=113 Identities=16% Similarity=0.239 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAK----EHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLEL 115 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~----e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~L 115 (168)
|+....++-.|+..|..++..+.. -...+..+++....+-.+|.+++..+..|..-++..+++=++..+..+...+
T Consensus 23 l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~ 102 (256)
T 3na7_A 23 LEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIA 102 (256)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 444444444555554444443332 2334455666666677777777777777777777777888899999999999
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14403 116 RAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDM 152 (168)
Q Consensus 116 k~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~ 152 (168)
+.+.....+.+-++......++..+..++.++.....
T Consensus 103 ~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~ 139 (256)
T 3na7_A 103 KERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEK 139 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888888888777777777666665554
No 2
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.37 E-value=0.052 Score=53.48 Aligned_cols=91 Identities=15% Similarity=0.161 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHhcHHHH
Q psy14403 46 DLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQ--TNIADIEEEYLELRAANDIET 123 (168)
Q Consensus 46 El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~--~d~~~i~~e~~~Lk~~N~~~~ 123 (168)
.+..|+.+|+++++..+.........+.+...|..|+.+|..++.-.+.-...+-.. --.++++...+.|+..|...+
T Consensus 957 ~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~ 1036 (1080)
T 2dfs_A 957 TYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLK 1036 (1080)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777666666666666666666666666655554433322222110 012466777777888888888
Q ss_pred HHHHHHHHHHHHH
Q psy14403 124 RHLEEQFTERSKK 136 (168)
Q Consensus 124 ~~ld~iF~eR~~~ 136 (168)
+++|++=......
T Consensus 1037 qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 1037 TEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888776333333
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=95.63 E-value=0.51 Score=35.85 Aligned_cols=22 Identities=9% Similarity=0.099 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELS 61 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~ 61 (168)
|+.|+.-+..+|..+..+++.+
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~~l 25 (284)
T 1c1g_A 4 IKKKMQMLKLDKENALDRADEA 25 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHH
Confidence 4455555555555555544444
No 4
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.30 E-value=0.7 Score=40.90 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKEHA 66 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e~s 66 (168)
|+..++++..+|.+|+++....++.-+
T Consensus 454 l~~e~~~~~~~i~~l~~~~~~~~~~l~ 480 (597)
T 3oja_B 454 LEAEVNELRAEVQQLTNEQIQQEQLLQ 480 (597)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666666666666666655544433
No 5
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.27 E-value=0.65 Score=34.75 Aligned_cols=103 Identities=20% Similarity=0.274 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH-------HHHhhcCCCHHHHHHHHHHHHH
Q psy14403 45 RDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLT-------MDKVNTQTNIADIEEEYLELRA 117 (168)
Q Consensus 45 ~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~-------~Dk~~t~~d~~~i~~e~~~Lk~ 117 (168)
..+..+|.+|...+ .+..+...-++.....|..|..+|+-+|....-. ++++ .....+++..+.++..
T Consensus 16 ~~~~eel~~lke~l---~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L--~~~k~eLe~~l~el~~ 90 (129)
T 2fxo_A 16 ASMKEEFTRLKEAL---EKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQL--IKNKIQLEAKVKEMNK 90 (129)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 34455555555544 3555566677888888888888888777655433 2333 2345678888999999
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14403 118 ANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDM 152 (168)
Q Consensus 118 ~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~ 152 (168)
+-+......+.+...++..+..+..++.+|+.+..
T Consensus 91 rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 91 RLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988753
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.39 E-value=0.47 Score=38.47 Aligned_cols=106 Identities=16% Similarity=0.215 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHh-----hcCCCHHHHHHHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKE-HATFLLYDKRVKEMATELTELQGKLSDYNLTMDKV-----NTQTNIADIEEEYL 113 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e-~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~-----~t~~d~~~i~~e~~ 113 (168)
|++++.-+..|+..++...+....+ +.+-..+++....|..+...|+..|-|.=.+-|-+ .+-...++++..++
T Consensus 61 L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln 140 (189)
T 2v71_A 61 LQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLN 140 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHH
Confidence 3344444444444444333333333 22233344444444444444444443333333322 12245667777777
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 114 ELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEK 149 (168)
Q Consensus 114 ~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~ 149 (168)
..-++|.-....+|+ |..+...++.|..++..
T Consensus 141 ~aiEr~alLE~El~E----Ke~l~~~~QRLkdE~rD 172 (189)
T 2v71_A 141 QAIERNAFLESELDE----KESLLVSVQRLKDEARD 172 (189)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHCCC---------
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 777777777777763 44444444444444433
No 7
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=94.37 E-value=1.6 Score=37.75 Aligned_cols=97 Identities=19% Similarity=0.281 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHH
Q psy14403 44 IRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIET 123 (168)
Q Consensus 44 i~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~ 123 (168)
+.++..+|+++-++.....+.......++|...++.+-..+++.|-+.+|..|=.+.. +++.+. . +..
T Consensus 375 l~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~----~---~~~ 442 (471)
T 3mq9_A 375 LKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMA-----SLDAEK----A---QGQ 442 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH----H---HHH
T ss_pred HHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHH-----HHHHHH----H---HHH
Confidence 4556666777766666666777788888888888888888888888888877654432 233222 2 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14403 124 RHLEEQFTERSKKQHQLHELEAEIEKLDM 152 (168)
Q Consensus 124 ~~ld~iF~eR~~~E~~i~~lE~eie~~~~ 152 (168)
+.|.++=.+-..++.+|+.++.||+++++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVERLRR 471 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46666666667777788888888877653
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.33 E-value=0.33 Score=47.91 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q psy14403 45 RDLTNEITRLKRQIELSAKEHA 66 (168)
Q Consensus 45 ~El~~EI~kL~~e~e~~~~e~s 66 (168)
..|...|..|+..++..++++.
T Consensus 924 ~~LE~kl~eLq~rL~~~e~~n~ 945 (1080)
T 2dfs_A 924 IGLENKIMQLQRKIDEQNKEYK 945 (1080)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333333
No 9
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=94.32 E-value=1 Score=33.66 Aligned_cols=89 Identities=16% Similarity=0.194 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHh-----hcCCCHHHHHHHH
Q psy14403 39 LLQLKIRDLTNEITRLKRQIELSAKE-HATFLLYDKRVKEMATELTELQGKLSDYNLTMDKV-----NTQTNIADIEEEY 112 (168)
Q Consensus 39 lLR~Ki~El~~EI~kL~~e~e~~~~e-~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~-----~t~~d~~~i~~e~ 112 (168)
-|+.|++-|..|...++.......++ ++.-..+++....|..+-..|+..|-|.=..=|-+ .+..+.+|++..|
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~ 86 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRL 86 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHH
Confidence 57888888999999988888887776 44577788888888888888888777776665544 3446788888888
Q ss_pred HHHHHhcHHHHHHHH
Q psy14403 113 LELRAANDIETRHLE 127 (168)
Q Consensus 113 ~~Lk~~N~~~~~~ld 127 (168)
+..-++|.=...+||
T Consensus 87 n~aiErnalLE~El~ 101 (111)
T 2v66_B 87 NQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888888887
No 10
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=93.74 E-value=0.63 Score=32.94 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14403 121 IETRHLEEQFTERSKKQHQLHELEAEIEKLDM 152 (168)
Q Consensus 121 ~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~ 152 (168)
-.++.+|..++.|.+.|.++..|..||.=+++
T Consensus 53 ~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk 84 (86)
T 3swk_A 53 SFRQDVDNASLARLDLERKVESLQEEIAFLKK 84 (86)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35678999999999999999999999976654
No 11
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=93.20 E-value=2.1 Score=32.38 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 120 DIETRHLEEQFTERSKKQHQLHELEAE 146 (168)
Q Consensus 120 ~~~~~~ld~iF~eR~~~E~~i~~lE~e 146 (168)
......+..+.......+..+..+..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (284)
T 1c1g_A 233 KEAETRAEFAERSVTKLEKSIDDLEDE 259 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 12
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=92.94 E-value=0.32 Score=47.91 Aligned_cols=11 Identities=27% Similarity=0.365 Sum_probs=4.0
Q ss_pred HHHHHhHhHHH
Q psy14403 81 ELTELQGKLSD 91 (168)
Q Consensus 81 EI~~LQG~LAD 91 (168)
++..|+.++.+
T Consensus 921 ~~~~Le~~l~e 931 (1184)
T 1i84_S 921 KKQELEEILHE 931 (1184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 13
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=92.89 E-value=0.52 Score=46.41 Aligned_cols=9 Identities=33% Similarity=0.530 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy14403 48 TNEITRLKR 56 (168)
Q Consensus 48 ~~EI~kL~~ 56 (168)
..|+..++.
T Consensus 863 ~~eL~el~~ 871 (1184)
T 1i84_S 863 DEELQRTKE 871 (1184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.59 E-value=4.5 Score=35.65 Aligned_cols=41 Identities=10% Similarity=0.193 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 109 EEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEK 149 (168)
Q Consensus 109 ~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~ 149 (168)
.+++..++.+.++.++.++..-....+..+++..+..++.+
T Consensus 536 ~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~ 576 (597)
T 3oja_B 536 QKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQ 576 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333333333333333333333
No 15
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=92.34 E-value=3.9 Score=33.34 Aligned_cols=68 Identities=9% Similarity=0.090 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Q psy14403 64 EHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTER 133 (168)
Q Consensus 64 e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR 133 (168)
.+-.|..+++..+.+..++..|+.++....--++.+.. ..+.+...+..++..-......+|..+.+=
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~--~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~ 155 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSE--KQEDLKKEMLELEKLALELESLVENEVKNI 155 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888888888888887777776655 355666666666666666666666665443
No 16
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=91.95 E-value=2.5 Score=39.24 Aligned_cols=99 Identities=20% Similarity=0.268 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHH-
Q psy14403 36 YEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLY-DKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYL- 113 (168)
Q Consensus 36 y~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~y-ekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~- 113 (168)
-.|+|=..-.++++=|++|+.+++.+++.+..-.+| ....+ .|++++..-| +.+...++|.
T Consensus 51 LQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E-------~Lr~rq~q~~----------dNdNtynE~S~ 113 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIME-------ILRGDFSSAN----------NRDNTYNRVSE 113 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH-------TTSSHHHHHH----------HHHHHHHHTTH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHH-------HHHHHHHhhh----------ccchhHHHHHH
Confidence 367888888999999999999999998776655554 22222 2334444333 2223445555
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14403 114 ELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLD 151 (168)
Q Consensus 114 ~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~ 151 (168)
+|+.+-..++..||..|..-+.++..|+.+-.+|+++.
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888899999888888887777777766654
No 17
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=91.49 E-value=2.7 Score=29.79 Aligned_cols=90 Identities=14% Similarity=0.197 Sum_probs=69.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCC-------------HHHHHHHHHHHHHhcHHHHHHHHHH
Q psy14403 63 KEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTN-------------IADIEEEYLELRAANDIETRHLEEQ 129 (168)
Q Consensus 63 ~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d-------------~~~i~~e~~~Lk~~N~~~~~~ld~i 129 (168)
.--..|..+..+...+...+..|+.++..+..+.+-+..=.+ ..++..-...|..+-+.....++.+
T Consensus 10 ~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~l 89 (117)
T 2zqm_A 10 AMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNAL 89 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578899999999999999999999999999998866211 1245566677777777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy14403 130 FTERSKKQHQLHELEAEIEKLDM 152 (168)
Q Consensus 130 F~eR~~~E~~i~~lE~eie~~~~ 152 (168)
=......+.++.+++..+.+...
T Consensus 90 e~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 90 ERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888888888888888776543
No 18
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=91.18 E-value=3.5 Score=30.45 Aligned_cols=85 Identities=16% Similarity=0.238 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy14403 37 EGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELR 116 (168)
Q Consensus 37 ~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk 116 (168)
+.-||.++.+++.|=.+|.-+++........|. .|++. |+.. ...+++++.
T Consensus 22 I~~LR~qid~~~~e~a~l~leldn~~~~~edfk---~KyE~---E~~~--------------------r~~~E~di~--- 72 (119)
T 3ol1_A 22 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLR---EKLQE---EMLQ--------------------REEAENTLQ--- 72 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH---HHHH--------------------HHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHH---HHHH--------------------HHHHHHHHH---
Confidence 456788888888888888777777665555442 33332 1110 122333333
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14403 117 AANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMID 154 (168)
Q Consensus 117 ~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~ 154 (168)
..++.+|..+..|.+.|.++..|..||.=++++-
T Consensus 73 ----~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~h 106 (119)
T 3ol1_A 73 ----SFRQDVDNASLARLDLERKVESLQEEIAFLKKLH 106 (119)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999998887766653
No 19
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=90.54 E-value=5.2 Score=31.31 Aligned_cols=108 Identities=15% Similarity=0.263 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH-------HHHHHhhcCCCHHHHHHHHH
Q psy14403 41 QLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYN-------LTMDKVNTQTNIADIEEEYL 113 (168)
Q Consensus 41 R~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyN-------l~~Dk~~t~~d~~~i~~e~~ 113 (168)
-+|+.+|-.|+.-...-+..++-....| ..|-+.....|+.|..+|-+.= .-|.++. .+++.++.++.
T Consensus 41 E~k~~eLEeeL~~v~~nlKsLE~seeka---sqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLE--k~id~lEd~L~ 115 (155)
T 2efr_A 41 EGKSAELEEELKTVTNNLKSLEAQAEKY---SQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLE--KSIDDLEDELY 115 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 4567777777766666666555444333 3344445555555555555543 3333443 35778888888
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14403 114 ELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMI 153 (168)
Q Consensus 114 ~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~ 153 (168)
.-+.++......+|..|.+=.....-.-.++++|..++.+
T Consensus 116 ~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~~~~ 155 (155)
T 2efr_A 116 AQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLKKL 155 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhhcC
Confidence 8899999999999999999888888888889988887653
No 20
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=90.08 E-value=1.4 Score=33.23 Aligned_cols=97 Identities=23% Similarity=0.260 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHH
Q psy14403 43 KIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIE 122 (168)
Q Consensus 43 Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~ 122 (168)
-|.-|..||++|+.+++.+..+ .++....|-.-|..|+++|+.+....+++.. +-+.++.+...+..++.
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E------~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~--e~e~Lr~e~~~l~~~~~-- 85 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTE------SQRVVLQLKGHVSELEADLAEQQHLRQQAAD--DCEFLRAELDELRRQRE-- 85 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhh--
Confidence 4666777888888888777544 4456678888899999999999877666554 44455555555543332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14403 123 TRHLEEQFTERSKKQHQLHELEAEIEKLD 151 (168)
Q Consensus 123 ~~~ld~iF~eR~~~E~~i~~lE~eie~~~ 151 (168)
.-+.++.-..+.|...+..|....+++
T Consensus 86 --~~~~~q~~~~e~E~kAqa~Eerf~KLK 112 (120)
T 3i00_A 86 --DTEKAQRSLSEIERKAQANEQRYSKLK 112 (120)
T ss_dssp -----------------------------
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233344444555555555565555544
No 21
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=89.47 E-value=1.5 Score=32.12 Aligned_cols=48 Identities=21% Similarity=0.382 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQG 87 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG 87 (168)
...=.+++..||.+|.+++..++.-.+.+..+.-+|--|..|+...+.
T Consensus 45 Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~~ 92 (96)
T 1t3j_A 45 VDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFSK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344557888889999999988888888888887777777777766654
No 22
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=88.33 E-value=14 Score=40.68 Aligned_cols=109 Identities=15% Similarity=0.185 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCH
Q psy14403 40 LQLKIRDLTNEITRLKRQIE--------------LSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNI 105 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e--------------~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~ 105 (168)
...+..+...||...+++.+ .+.+-.+.+..-+.+..+...+|++|+.+|+.++--.+.+.. +.
T Consensus 1981 ~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~--ek 2058 (3245)
T 3vkg_A 1981 LQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIR--ET 2058 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 34445555555555555442 233334455555566666666667777777666666555543 56
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 106 ADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKL 150 (168)
Q Consensus 106 ~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~ 150 (168)
+.+++++...+.+-++..+-++.+=-|+.+=.+.+..++.++..+
T Consensus 2059 ~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2059 EQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhc
Confidence 778888888888888888888888888888888888888877664
No 23
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=88.12 E-value=4.9 Score=28.58 Aligned_cols=57 Identities=21% Similarity=0.361 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc
Q psy14403 42 LKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNT 101 (168)
Q Consensus 42 ~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t 101 (168)
.+...|.+||+-|.-.++..+-++ .+||++.++--.||..||-+|+-=+.-+..+.+
T Consensus 19 ~~~E~L~qEi~~Lr~kv~elEnEr---lQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~ 75 (81)
T 3qh9_A 19 RKAEELLQELRHLKIKVEELENER---NQYEWKLKATKAEVAQLQEQVALKDAEIERLHS 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 667789999999999988887665 678999999999999999999887776665543
No 24
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=87.95 E-value=5.4 Score=28.02 Aligned_cols=71 Identities=11% Similarity=0.230 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHH
Q psy14403 45 RDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETR 124 (168)
Q Consensus 45 ~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~ 124 (168)
..+..|+.+++..+ .+......-++.....|..|..+|+.+| .....
T Consensus 17 ~~~eeel~~lke~l---~k~e~~rkele~~~~~l~~ek~~L~~ql------------------------------~eaEe 63 (89)
T 3bas_A 17 KEQLKQMDKMKEDL---AKTERIKKELEEQNVTLLEQKNDLFGSM------------------------------KQLED 63 (89)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------HHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------HhHHH
Confidence 34555666665554 4556677778888888888888888871 22223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 125 HLEEQFTERSKKQHQLHELEAEIE 148 (168)
Q Consensus 125 ~ld~iF~eR~~~E~~i~~lE~eie 148 (168)
..+.+-..+.+.|..++.++..++
T Consensus 64 ~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 64 KVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334555566677777777766654
No 25
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=87.65 E-value=3.4 Score=29.95 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy14403 38 GLLQLKIRDLTNEITRLKRQIELSAKEHATFL 69 (168)
Q Consensus 38 glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~ 69 (168)
--|++||.+|..||.+-..+.+-+.+=..+|.
T Consensus 18 kkL~~Ki~el~~ei~ke~~~regl~Km~~vY~ 49 (98)
T 2ke4_A 18 KRLQQQLEERSRELQKEVDQREALKKMKDVYE 49 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999888887666653
No 26
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=87.21 E-value=6.2 Score=27.95 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHHHHHHHhHhHHHHHHHHHHh
Q psy14403 37 EGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYD----KRVKEMATELTELQGKLSDYNLTMDKV 99 (168)
Q Consensus 37 ~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~ye----krae~La~EI~~LQG~LADyNl~~Dk~ 99 (168)
+.-|-.||......|.-|+-+++.+...++++..=- ...+.|..|+..|+.+.+.++.=++.+
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999998888888766522 234447778888887777776555443
No 27
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=87.14 E-value=6.2 Score=27.89 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 104 NIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIE 148 (168)
Q Consensus 104 d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie 148 (168)
+++...........+-......+..+-.+....+..+..++.++.
T Consensus 58 ~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 58 TDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555556666677777777777777777777776
No 28
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=86.29 E-value=6.6 Score=27.33 Aligned_cols=87 Identities=9% Similarity=0.179 Sum_probs=58.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCC-------------HHHHHHHHHHHHHhcHHHHHHHHH
Q psy14403 62 AKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTN-------------IADIEEEYLELRAANDIETRHLEE 128 (168)
Q Consensus 62 ~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d-------------~~~i~~e~~~Lk~~N~~~~~~ld~ 128 (168)
+.--..|..++.+...+...+..|+.++....++.+-+..-.+ ..++..-...|..+-+.....++.
T Consensus 4 Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~ 83 (107)
T 1fxk_A 4 QHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKT 83 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678889999999999999999999999999988865211 123444445555665666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14403 129 QFTERSKKQHQLHELEAEIE 148 (168)
Q Consensus 129 iF~eR~~~E~~i~~lE~eie 148 (168)
+=......+.++.+++..+.
T Consensus 84 le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 84 IERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555444
No 29
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=86.22 E-value=8.3 Score=28.41 Aligned_cols=91 Identities=23% Similarity=0.349 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHhhc-CCCHHHHHHHH
Q psy14403 35 YYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYD-KRVKEMATELTELQGKLSDYNLTMDKVNT-QTNIADIEEEY 112 (168)
Q Consensus 35 Yy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~ye-krae~La~EI~~LQG~LADyNl~~Dk~~t-~~d~~~i~~e~ 112 (168)
=|.|-||+--.-|-.|..+|+.-++ .+.+.|-.+= +=..+|-.||..|.| |.|..+||.++ ..+..+.....
T Consensus 6 ~Ff~KLR~La~tLe~Eta~L~~al~---~edsd~E~~~~rilhdl~seV~~LK~---dv~~~L~k~~~e~qe~~~FIKa~ 79 (101)
T 4aj5_1 6 SFCGKLRSLASTLDCETARLQRALD---GEESDFEDYPMRILYDLHSEVQTLKD---DINILLDKARLENQEGIDFIKAT 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---TCSSHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc---cccccchhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHH
Confidence 4889999999999999999985544 3555553332 235789999999985 78899999987 34455566666
Q ss_pred HHHHHhcHHHHHHHHHHHH
Q psy14403 113 LELRAANDIETRHLEEQFT 131 (168)
Q Consensus 113 ~~Lk~~N~~~~~~ld~iF~ 131 (168)
.-|..+|...=..|-+.|.
T Consensus 80 kvL~~rns~DI~~ire~fq 98 (101)
T 4aj5_1 80 KVLMEKNSMDIMKIREYFQ 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHH
Confidence 7777777766666666553
No 30
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=85.96 E-value=9.7 Score=28.93 Aligned_cols=42 Identities=19% Similarity=0.349 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 108 IEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEK 149 (168)
Q Consensus 108 i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~ 149 (168)
+..++..++.+++...++++.+=.+-...+.++.++|.+++.
T Consensus 94 lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 94 LKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555556666655566666666666666554
No 31
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=85.87 E-value=7.1 Score=27.63 Aligned_cols=45 Identities=13% Similarity=0.209 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14403 107 DIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLD 151 (168)
Q Consensus 107 ~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~ 151 (168)
.+..++.+||.+|.....+.+++=..|..++.++.++..|...-+
T Consensus 24 lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq 68 (81)
T 2jee_A 24 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 366778888888888888888888888888888887777765443
No 32
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=84.89 E-value=9.7 Score=28.01 Aligned_cols=9 Identities=33% Similarity=0.615 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy14403 53 RLKRQIELS 61 (168)
Q Consensus 53 kL~~e~e~~ 61 (168)
.|.++++..
T Consensus 24 ~LR~qid~~ 32 (119)
T 3ol1_A 24 ELRRQVDQL 32 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 33
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.41 E-value=7.1 Score=28.51 Aligned_cols=80 Identities=13% Similarity=0.159 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy14403 68 FLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETR-HLEEQFTERSKKQHQLHELEAE 146 (168)
Q Consensus 68 ~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~-~ld~iF~eR~~~E~~i~~lE~e 146 (168)
+.+++.+......|++.|+..|++-...--.+-. ....|..+..+|.+.-=..+. -|=..=.+|...|....+|+.+
T Consensus 14 l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~--~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~q 91 (97)
T 2eqb_B 14 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEE--EADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQ 91 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444666666666666655543322221 234444455554433221111 1111123444556666667666
Q ss_pred HHH
Q psy14403 147 IEK 149 (168)
Q Consensus 147 ie~ 149 (168)
|.+
T Consensus 92 L~d 94 (97)
T 2eqb_B 92 LRE 94 (97)
T ss_dssp HHH
T ss_pred Hhh
Confidence 654
No 34
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=84.13 E-value=4.1 Score=29.21 Aligned_cols=63 Identities=21% Similarity=0.263 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhc
Q psy14403 102 QTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMIDISMWIDISTI 164 (168)
Q Consensus 102 ~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~~~~~~~~~~~ 164 (168)
+.+++.+..++..|+..=.+.-.+|..+=.++.....+|..++.+.+++..--...|-+.+..
T Consensus 3 ~~~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~ 65 (96)
T 3q8t_A 3 GSDSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEF 65 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345677888889999999999999999999999999999999999999999999999887654
No 35
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=83.33 E-value=9.8 Score=26.83 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHH
Q psy14403 70 LYDKRVKEMATELTELQGKLSDYNLTM 96 (168)
Q Consensus 70 ~yekrae~La~EI~~LQG~LADyNl~~ 96 (168)
.++.....+..++.+|..++..++..+
T Consensus 68 ~~~~~l~~l~~~i~~l~~~i~~l~~~~ 94 (112)
T 1l8d_A 68 KYHLDLNNSKNTLAKLIDRKSELEREL 94 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333
No 36
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=83.23 E-value=12 Score=27.72 Aligned_cols=80 Identities=23% Similarity=0.261 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy14403 38 GLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRA 117 (168)
Q Consensus 38 glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~ 117 (168)
.-|..++..+..|.+.|..++. .+...+.-.+.+.+.|...-.+|+++|.|.+-=++ +.+.....|.+
T Consensus 37 ~ele~~~~~l~~Ek~~L~~qL~---~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rle---------eeee~~~~L~~ 104 (129)
T 2fxo_A 37 KELEEKMVSLLQEKNDLQLQVQ---AEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLE---------DEEEMNAELTA 104 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH
Confidence 3456667777777777776654 35677777788888888888888888888764333 33444444444
Q ss_pred hcHHHHHHHHHH
Q psy14403 118 ANDIETRHLEEQ 129 (168)
Q Consensus 118 ~N~~~~~~ld~i 129 (168)
.-.+....++.+
T Consensus 105 ~kkkle~e~~~L 116 (129)
T 2fxo_A 105 KKRKLEDECSEL 116 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 37
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=83.14 E-value=25 Score=31.36 Aligned_cols=43 Identities=21% Similarity=0.267 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy14403 36 YEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEM 78 (168)
Q Consensus 36 y~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~L 78 (168)
-.++|=.--..++.-|++|+..++.+.+.+.+-.+|-+-..++
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~ 96 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVEL 96 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5677777778999999999999999999888888886654433
No 38
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=78.84 E-value=8 Score=28.76 Aligned_cols=59 Identities=24% Similarity=0.397 Sum_probs=33.5
Q ss_pred hhhHHH---HHHHHHHHHHHHHHHHHHHHH-----------HHHh-----hhHHHHHHHHHHHHHHHHHHHhHhHHHH
Q psy14403 34 RYYEGL---LQLKIRDLTNEITRLKRQIEL-----------SAKE-----HATFLLYDKRVKEMATELTELQGKLSDY 92 (168)
Q Consensus 34 sYy~gl---LR~Ki~El~~EI~kL~~e~e~-----------~~~e-----~s~~~~yekrae~La~EI~~LQG~LADy 92 (168)
-||.|+ ..+-+.+|..||.....|+.. .+++ .++|.+=+--++.|..=|++|+++|||-
T Consensus 24 ~~~~~~~~~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 24 LYFQGIDPFTMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADL 101 (107)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366664 456667777777765555443 3332 2233333334566667777777777764
No 39
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=78.22 E-value=23 Score=27.78 Aligned_cols=112 Identities=13% Similarity=0.124 Sum_probs=39.6
Q ss_pred CCCcccccchhhhHHHHHHHHH------HHHHHHHHHHHH--HHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q psy14403 24 GPGFRQVQDKRYYEGLLQLKIR------DLTNEITRLKRQ--IELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLT 95 (168)
Q Consensus 24 Gp~~RQV~DksYy~glLR~Ki~------El~~EI~kL~~e--~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~ 95 (168)
.|. --+.|- |++.-|+++-. ++-.|-.++... ......+......+++....|...|++|...|.--|.+
T Consensus 20 ~~~-~~~md~-~l~~rL~~Rd~~E~~~~~l~~e~~~~~~~~~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~ 97 (152)
T 3a7p_A 20 NPQ-TDSMDD-LLIRRLTDRNDKEAHLNELFQDNSGAIGGNIVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKN 97 (152)
T ss_dssp ---------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCc-chhHHH-HHHHHHHHhhhHHHHHHHHHHhhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455 234443 36666665554 777776654442 00111122344455555555555555555555555555
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHH---HHHHHHHHHH
Q psy14403 96 MDKVNTQTNIADIEEEYLELRAANDIETRHLEEQ---FTERSKKQHQ 139 (168)
Q Consensus 96 ~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~i---F~eR~~~E~~ 139 (168)
++.++. .+..+..+++.+..+..+.+++-+.+ ++.|+..|.+
T Consensus 98 ~e~l~D--El~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qEAe 142 (152)
T 3a7p_A 98 TERLNA--ALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKETE 142 (152)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555543 34445555555555555555544333 4556655543
No 40
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.17 E-value=33 Score=29.58 Aligned_cols=31 Identities=10% Similarity=0.061 Sum_probs=15.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 119 NDIETRHLEEQFTERSKKQHQLHELEAEIEK 149 (168)
Q Consensus 119 N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~ 149 (168)
-+..+++++.+..+....+..+.++..+|++
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
T 3oja_A 437 WDMYQHKETQLAEENARLKKLNGEADLALAS 467 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhhhhhhhhhhhhhhHh
Confidence 3344444555555555555555555555443
No 41
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=77.91 E-value=17 Score=26.58 Aligned_cols=19 Identities=16% Similarity=0.127 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhcHHHHHH
Q psy14403 107 DIEEEYLELRAANDIETRH 125 (168)
Q Consensus 107 ~i~~e~~~Lk~~N~~~~~~ 125 (168)
..+++...|.+.+++.+..
T Consensus 72 ~~~~~~e~Lq~E~erLr~~ 90 (100)
T 1go4_E 72 RLREDHSQLQAECERLRGL 90 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555443
No 42
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=77.53 E-value=11 Score=25.45 Aligned_cols=44 Identities=20% Similarity=0.330 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 105 IADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIE 148 (168)
Q Consensus 105 ~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie 148 (168)
.-++..+..+|+..|....+-++.....|+..|..++++=.++.
T Consensus 9 VYalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~n 52 (61)
T 3l4f_A 9 VYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMN 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45678999999999999999999999999999999998866543
No 43
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=77.08 E-value=9.4 Score=25.33 Aligned_cols=39 Identities=23% Similarity=0.362 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 105 IADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHEL 143 (168)
Q Consensus 105 ~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~l 143 (168)
+-.+.++..+|+.-|.++.+.+|+=-..|+++|.-++++
T Consensus 12 VYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999987
No 44
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=76.87 E-value=14 Score=27.30 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14403 102 QTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDM 152 (168)
Q Consensus 102 ~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~ 152 (168)
+++..++..+|..|...-++..++-..+=...+.--..++.|+.+|+++..
T Consensus 29 ~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ 79 (104)
T 3s9g_A 29 NMSKQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRA 79 (104)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 588999999999999888888777777777777777889999999988754
No 45
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=76.32 E-value=23 Score=26.78 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14403 39 LLQLKIRDLTNEITRLKR 56 (168)
Q Consensus 39 lLR~Ki~El~~EI~kL~~ 56 (168)
-|+.++.+|+.|...+..
T Consensus 26 ~l~~eN~~Lk~e~e~l~~ 43 (155)
T 2oto_A 26 RLRHENKDLKARLENAME 43 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555554443
No 46
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=75.95 E-value=7.9 Score=34.51 Aligned_cols=60 Identities=15% Similarity=0.193 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHh
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKV 99 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~ 99 (168)
|..++.+|.++.+.+.+++-...+.......+-.++..|..+|++|+.++....--++.+
T Consensus 43 ~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 43 KLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555544333333334455556666666666666666655444443
No 47
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=75.91 E-value=8.9 Score=34.84 Aligned_cols=59 Identities=10% Similarity=0.174 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDK 98 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk 98 (168)
|+.+..+|.+|.+.+.++|-...+....-..+-.++..|..+|++|+.++....--++.
T Consensus 45 ~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 45 LRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554443333333344556666777777777766666555543
No 48
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=75.84 E-value=23 Score=26.75 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 109 EEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKL 150 (168)
Q Consensus 109 ~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~ 150 (168)
..+...|+..+...+..++.+..+-.....++..++.++.++
T Consensus 88 ~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 88 DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555555555554444
No 49
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=75.77 E-value=15 Score=24.48 Aligned_cols=60 Identities=13% Similarity=0.246 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhcHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhc
Q psy14403 105 IADIEEEYLELRAANDIETR-----HLEEQFTERSKKQHQLHELEAEIEKLDMIDISMWIDISTI 164 (168)
Q Consensus 105 ~~~i~~e~~~Lk~~N~~~~~-----~ld~iF~eR~~~E~~i~~lE~eie~~~~~~~~~~~~~~~~ 164 (168)
+.+|+.+|..+-.+|-.+.+ .++++=..-......++....||.++.+.+-+.-|+|..+
T Consensus 11 l~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 11 MRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56788889998888865432 2333333334455578888899999999888888877653
No 50
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=75.56 E-value=1.1e+02 Score=34.16 Aligned_cols=51 Identities=6% Similarity=0.034 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy14403 105 IADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMIDI 155 (168)
Q Consensus 105 ~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~~ 155 (168)
...+++++.++.++-+..+++.+..-.+++..+.++..++..++.-.++..
T Consensus 2030 L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~ 2080 (3245)
T 3vkg_A 2030 QDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLD 2080 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777777777777777777888888888888888777776653
No 51
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=73.64 E-value=23 Score=27.22 Aligned_cols=21 Identities=19% Similarity=0.301 Sum_probs=3.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q psy14403 134 SKKQHQLHELEAEIEKLDMID 154 (168)
Q Consensus 134 ~~~E~~i~~lE~eie~~~~~~ 154 (168)
++++..+..++.++..++...
T Consensus 113 ~e~e~ll~~lq~QL~~LK~v~ 133 (135)
T 2e7s_A 113 REKDMLLDTLTLQLKNLKKVM 133 (135)
T ss_dssp THHHHCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 445555556666666555443
No 52
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=73.23 E-value=26 Score=26.12 Aligned_cols=89 Identities=9% Similarity=0.132 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHH---hHhHHHHHHHHHHhhcCC--C-----H----------------------------H
Q psy14403 65 HATFLLYDKRVKEMATELTEL---QGKLSDYNLTMDKVNTQT--N-----I----------------------------A 106 (168)
Q Consensus 65 ~s~~~~yekrae~La~EI~~L---QG~LADyNl~~Dk~~t~~--d-----~----------------------------~ 106 (168)
...+..|+.....|...+..| ++++.||..+++-+..-. + | -
T Consensus 15 ~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~lG~g~~vE~ 94 (151)
T 2zdi_C 15 AYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVGSGYAVER 94 (151)
T ss_dssp HHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEEeCCCeEEEe
Confidence 445667777888888888888 999999999988765422 1 1 2
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14403 107 DIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMI 153 (168)
Q Consensus 107 ~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~ 153 (168)
++.+-..-++.+-+.....++.+-..-..+...+..++..|+++.+.
T Consensus 95 ~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 95 SIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555667778888888899999888889999999999999888754
No 53
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=72.07 E-value=11 Score=26.10 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHhHHH
Q psy14403 65 HATFLLYDKRVKEMATELTELQGKLSD 91 (168)
Q Consensus 65 ~s~~~~yekrae~La~EI~~LQG~LAD 91 (168)
...-..++++..+...+|++|+.+|--
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666777777777766533
No 54
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=72.02 E-value=11 Score=32.48 Aligned_cols=74 Identities=12% Similarity=0.205 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-------HHHhH----hHHHHHHHHHHhhc---
Q psy14403 36 YEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATEL-------TELQG----KLSDYNLTMDKVNT--- 101 (168)
Q Consensus 36 y~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI-------~~LQG----~LADyNl~~Dk~~t--- 101 (168)
+.|..|.+++++..||..|..++....+....+.........+..-| ..|.+ =.+||+.+++.+.+
T Consensus 220 ~a~~a~k~~~~~~~ei~~l~~~i~~~~~l~~~l~~~~~~~~~l~~~I~~Ai~al~~l~~~W~~m~~~~~~l~~~I~~~~~ 299 (346)
T 2nrj_A 220 IVGVARDNLGKLEPLLAELRQTVDYKVTLNRVVGVAYSNINEMHKALDDAINALTYMSTQWHDLDSQYSGVLGHIENAAQ 299 (346)
T ss_dssp EEEEEGGGHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 35567788889999998888877665555555555544444444333 33333 35788888888887
Q ss_pred CCCHHHHH
Q psy14403 102 QTNIADIE 109 (168)
Q Consensus 102 ~~d~~~i~ 109 (168)
+++++.+.
T Consensus 300 ~i~~~~~~ 307 (346)
T 2nrj_A 300 KADQNKFK 307 (346)
T ss_dssp CCSTTTTG
T ss_pred cCCHHHHH
Confidence 45666655
No 55
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=70.92 E-value=26 Score=31.73 Aligned_cols=32 Identities=3% Similarity=0.047 Sum_probs=13.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHH
Q psy14403 59 ELSAKEHATFLLYDKRVKEMATELTELQGKLS 90 (168)
Q Consensus 59 e~~~~e~s~~~~yekrae~La~EI~~LQG~LA 90 (168)
+.+-.-...+.....+.++|..+...+..+++
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~ 101 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVR 101 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444433
No 56
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=70.06 E-value=30 Score=25.48 Aligned_cols=33 Identities=12% Similarity=0.341 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q psy14403 108 IEEEYLELRAANDIETRHLEEQFTERSKKQHQL 140 (168)
Q Consensus 108 i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i 140 (168)
++.+...++..-.+.-.+-..+..-+-..|-+|
T Consensus 89 lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EI 121 (131)
T 3tnu_A 89 VEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEI 121 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555444444444445555554444443
No 57
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=69.79 E-value=24 Score=24.59 Aligned_cols=29 Identities=10% Similarity=0.240 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q psy14403 68 FLLYDKRVKEMATELTELQGKLSDYNLTM 96 (168)
Q Consensus 68 ~~~yekrae~La~EI~~LQG~LADyNl~~ 96 (168)
+.-.+-|...|...-.+|+++|.|.|--+
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66778888888888889999999887543
No 58
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=69.76 E-value=8.9 Score=28.43 Aligned_cols=49 Identities=14% Similarity=0.172 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc
Q psy14403 53 RLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNT 101 (168)
Q Consensus 53 kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t 101 (168)
.|..+++.+.++......+..+.+.|..+|..|+..|.-+|.++..+-.
T Consensus 3 ~l~~~~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~Cp~ 51 (182)
T 3kqg_A 3 TLNAQIPELKSDLEKASALNTKIRALQGSLENMSKLLKRQNDILQVVSQ 51 (182)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 4555566666666666777777778888888888777777777766643
No 59
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=68.75 E-value=39 Score=26.31 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy14403 128 EQFTERSKKQHQLHELEAEIEKLDMIDISM 157 (168)
Q Consensus 128 ~iF~eR~~~E~~i~~lE~eie~~~~~~~~~ 157 (168)
.+-..=++++..+..++.++..++...+.|
T Consensus 119 ~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m 148 (154)
T 2ocy_A 119 RLTEQLREKDTLLDTLTLQLKNLKKVMHSL 148 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334567888888999999988887765
No 60
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=68.73 E-value=32 Score=25.23 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q psy14403 108 IEEEYLELRAANDIETRHLEEQFTERSKKQHQL 140 (168)
Q Consensus 108 i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i 140 (168)
++.+...++..-.+...+-..+..-+-..|-+|
T Consensus 87 lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EI 119 (129)
T 3tnu_B 87 LEEALQKAKQDMARLLREYQELMNTKLALDVEI 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555554444455555555555554443
No 61
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=68.52 E-value=28 Score=24.57 Aligned_cols=49 Identities=14% Similarity=0.270 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14403 103 TNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLD 151 (168)
Q Consensus 103 ~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~ 151 (168)
+.|+.|......|+...+.....++.+=...+..+....++|.+|..++
T Consensus 2 ~~md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~ 50 (101)
T 3u59_A 2 ASMEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQ 50 (101)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4566666666666666666666666666665666655555555555543
No 62
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=67.87 E-value=23 Score=24.48 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q psy14403 69 LLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSK 135 (168)
Q Consensus 69 ~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~ 135 (168)
..++.+.+.|-.+|..|+.+|+|-..- ..|++. +..|..+-+.....|+.+|..=-.
T Consensus 25 e~le~~Ie~LE~~i~~le~~ladp~~y------~~d~~~----~~~l~~~l~~~e~eLe~~~erWee 81 (89)
T 2lw1_A 25 EQLPQLLEDLEAKLEALQTQVADASFF------SQPHEQ----TQKVLADMAAAEQELEQAFERWEY 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTGG------GSCHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccc------cCCHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666652210 123333 334444455566667777665443
No 63
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=67.38 E-value=42 Score=26.14 Aligned_cols=110 Identities=14% Similarity=0.125 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHH-H
Q psy14403 47 LTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETR-H 125 (168)
Q Consensus 47 l~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~-~ 125 (168)
...++......+..++..+..|..++.+......|++.|+..|++-...--.+ -.....|..+..+|.+.-=..+. -
T Consensus 25 ~R~el~~~~~ri~~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~a--E~~~~~ie~ElEeLTasLFeEAN~M 102 (154)
T 2ocy_A 25 SLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKA--EEEADKLNKEVEDLTASLFDEANNM 102 (154)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH--HTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555555555555555555566555555544332222 22345555666665443322221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy14403 126 LEEQFTERSKKQHQLHELEAEIEKLDMIDISMW 158 (168)
Q Consensus 126 ld~iF~eR~~~E~~i~~lE~eie~~~~~~~~~~ 158 (168)
|=..=.+|...|....+|+.++.+-..+..+.=
T Consensus 103 Va~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq 135 (154)
T 2ocy_A 103 VADARKEKYAIEILNKRLTEQLREKDTLLDTLT 135 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122234455567788888888887776666543
No 64
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=66.99 E-value=11 Score=27.12 Aligned_cols=60 Identities=5% Similarity=0.162 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--HHHHhHhHHHHHHHHHHhhc
Q psy14403 42 LKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATE--LTELQGKLSDYNLTMDKVNT 101 (168)
Q Consensus 42 ~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~E--I~~LQG~LADyNl~~Dk~~t 101 (168)
.+..-|...|..|+++++.-.+++.....+-.=+.+--+- ...++++|+.++.-+|+++.
T Consensus 15 qRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~ 76 (98)
T 2ke4_A 15 QQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKL 76 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHH
Confidence 4566788899999999888888877665555544433222 44556777777777776665
No 65
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=65.58 E-value=34 Score=24.35 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHH
Q psy14403 37 EGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLS 90 (168)
Q Consensus 37 ~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LA 90 (168)
|--++.||..+..|........+..+. .....+.++..+-.||..|+-++.
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~---~~k~~e~~~~~~E~Ei~sL~kk~~ 54 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEA---DKKAAEERSKQLEDDIVQLEKQLR 54 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456788999999998888777766554 466678888888888888877776
No 66
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=65.07 E-value=38 Score=24.79 Aligned_cols=9 Identities=22% Similarity=0.350 Sum_probs=0.0
Q ss_pred HHHHHHHHH
Q psy14403 43 KIRDLTNEI 51 (168)
Q Consensus 43 Ki~El~~EI 51 (168)
|+.+++...
T Consensus 16 K~eel~~~~ 24 (129)
T 3tnu_B 16 KYEELQQTA 24 (129)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 334443333
No 67
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=64.15 E-value=16 Score=24.43 Aligned_cols=49 Identities=20% Similarity=0.307 Sum_probs=33.8
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 96 MDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEK 149 (168)
Q Consensus 96 ~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~ 149 (168)
+..+..+..++++...+.+|+.+-+..--- -+-+..|++++++|++|..
T Consensus 18 vkalggggrieelkkkweelkkkieelggg-----gevkkveeevkkleeeikk 66 (67)
T 1lq7_A 18 VKALGGGGRIEELKKKWEELKKKIEELGGG-----GEVKKVEEEVKKLEEEIKK 66 (67)
T ss_dssp HHHSCCSSSHHHHHHHHHHHHHHHHHTTSS-----STHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHHHhCCC-----cchhHHHHHHHHHHHHHhc
Confidence 345667889999999998888665432110 1346678888888888864
No 68
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=63.50 E-value=25 Score=25.51 Aligned_cols=56 Identities=14% Similarity=0.151 Sum_probs=48.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH
Q psy14403 34 RYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDY 92 (168)
Q Consensus 34 sYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADy 92 (168)
+-..+-|..-+.+..+| |..|+..++++-..+-..+.+++.|...-.-|+++|.++
T Consensus 35 s~tfarLc~~Vd~t~~e---L~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 35 ATTFARLCQQVDMTQKH---LEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp CCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44557788888888776 568999999999999999999999999999999999886
No 69
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=63.40 E-value=6.4 Score=33.14 Aligned_cols=73 Identities=16% Similarity=0.227 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHhhcC----CCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14403 76 KEMATELTELQGKLSDYNLTMDKVNTQ----TNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLD 151 (168)
Q Consensus 76 e~La~EI~~LQG~LADyNl~~Dk~~t~----~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~ 151 (168)
..++.+|..|+.+++ .+-.++... -.... +..+..|..+++........|-...+....++..+.+|+++++
T Consensus 20 ~~~~~~~~~~~~e~~---~l~~~~~~~~~~~~~~~~-~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 20 SGDAAELEQLRREAA---VLREQLENAVGSHAPTRS-ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp -----------------------------------C-CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHH---HHHHhhhhcccCcccchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344566666665555 333333211 01111 3445556666666666666666677788888999999999886
Q ss_pred h
Q psy14403 152 M 152 (168)
Q Consensus 152 ~ 152 (168)
.
T Consensus 96 s 96 (251)
T 3m9b_A 96 Q 96 (251)
T ss_dssp S
T ss_pred C
Confidence 5
No 70
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=63.32 E-value=15 Score=26.84 Aligned_cols=35 Identities=29% Similarity=0.375 Sum_probs=20.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q psy14403 59 ELSAKEHATFLLYDKRVKEMATELTELQGKLSDYN 93 (168)
Q Consensus 59 e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyN 93 (168)
+.+.++.+.-..-++++++|..||+.|--+|.|--
T Consensus 53 ~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 53 ESLEKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555666666666666666666543
No 71
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=63.21 E-value=37 Score=24.05 Aligned_cols=53 Identities=19% Similarity=0.317 Sum_probs=42.8
Q ss_pred hhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy14403 33 KRYYEGLL---QLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTEL 85 (168)
Q Consensus 33 ksYy~glL---R~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~L 85 (168)
.+||.-+= |.-..+.-.|..+|+++++.++.+.+.+...=.+..+||..++.+
T Consensus 27 e~YWk~lAE~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q~m 82 (83)
T 1uii_A 27 SQYWKEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYM 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57887664 444566778999999999999999999988888888888877654
No 72
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=63.03 E-value=20 Score=27.16 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHhHhH
Q psy14403 47 LTNEITRLKRQIELSAKE---------HATFLLYDKRVKEMATELTELQGKL 89 (168)
Q Consensus 47 l~~EI~kL~~e~e~~~~e---------~s~~~~yekrae~La~EI~~LQG~L 89 (168)
+.+||.+|+..++...+- ...+..+.+..+.|..+|..|.++-
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q 59 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVH 59 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999888888764 3457888888888888888887753
No 73
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=62.34 E-value=16 Score=32.02 Aligned_cols=57 Identities=12% Similarity=0.208 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDK 98 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk 98 (168)
+..+..+|.+|.+.+.+++-. +.......+-.++..|..+|++|+.++....--++.
T Consensus 40 ~~~~~~~l~~~~n~~sk~i~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 40 LKKRLQEVQTERNQVAKRVPK--APPEEKEALIARGKALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHSSS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh--hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555443 222233445556666667777777666665555543
No 74
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=62.33 E-value=42 Score=30.77 Aligned_cols=53 Identities=17% Similarity=0.265 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q psy14403 44 IRDLTNEITRLKRQIELSAKEHAT-FLLYDKRVKEMATELTELQGKLSDYNLTM 96 (168)
Q Consensus 44 i~El~~EI~kL~~e~e~~~~e~s~-~~~yekrae~La~EI~~LQG~LADyNl~~ 96 (168)
..|++++=..++.|.+.+.+.++. -..|+...+.-.+++...+..+|||+.-+
T Consensus 36 ~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~AeY~~kl 89 (497)
T 3iox_A 36 VAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLADYPVKL 89 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443 24555555555555555555555555533
No 75
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=62.16 E-value=57 Score=25.80 Aligned_cols=41 Identities=24% Similarity=0.248 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 107 DIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEI 147 (168)
Q Consensus 107 ~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~ei 147 (168)
++..-...|..-.++....+-.+..+++..-+.+..+|.+-
T Consensus 94 elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~ 134 (168)
T 3o0z_A 94 DLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEK 134 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555556666666666666666665543
No 76
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=61.27 E-value=40 Score=23.76 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHH
Q psy14403 37 EGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLS 90 (168)
Q Consensus 37 ~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LA 90 (168)
|--++.||..|..|........+..+.. ....+.++..+-.||..|+-++.
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~---~k~~e~~~~~~E~ei~sL~kKiq 54 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEAD---KKQAEDRCKQLEEEQQGLQKKLK 54 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHH
Confidence 4567889999999988888777776654 56678888888888888877776
No 77
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=60.88 E-value=41 Score=26.03 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=43.8
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q psy14403 30 VQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTM 96 (168)
Q Consensus 30 V~DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~ 96 (168)
|+|..=--..|| +|.++..|+.++..++..- =...-..|....+.|...++.|++.|+.|=.+-
T Consensus 12 i~~~~~~~~alr-~ia~l~r~~~~i~~~~n~e--I~~ik~~~~~~~~~l~~~i~~l~~~l~~y~e~~ 75 (171)
T 2p2u_A 12 VADIRQAEGALA-EIATIDRKVGEIEAQMNEA--IDAAKARASQKSAPLLARRKELEDGVATFATLN 75 (171)
T ss_dssp CCSHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556555334443 6777777777766655432 233455688889999999999999999986554
No 78
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=60.52 E-value=11 Score=34.11 Aligned_cols=14 Identities=21% Similarity=0.366 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q psy14403 40 LQLKIRDLTNEITR 53 (168)
Q Consensus 40 LR~Ki~El~~EI~k 53 (168)
||++.|++..+|++
T Consensus 52 l~~~rn~~sk~i~~ 65 (485)
T 3qne_A 52 HNKKLNSVQKEIGK 65 (485)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 79
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=60.30 E-value=16 Score=21.93 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14403 39 LLQLKIRDLTNEITRLKRQIELSAKE 64 (168)
Q Consensus 39 lLR~Ki~El~~EI~kL~~e~e~~~~e 64 (168)
-+|.|+.+.+++|+-|+++...++..
T Consensus 4 ~mRrKn~a~qqDIddlkrQN~~Le~Q 29 (34)
T 1a93_B 4 GMRRKNDTHQQDIDDLKRQNALLEQQ 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhhHhhHhhHHHHHHHHHHHHHH
Confidence 47899999999999999887766543
No 80
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=59.86 E-value=38 Score=30.65 Aligned_cols=22 Identities=9% Similarity=0.187 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhHhHHHHHHHH
Q psy14403 75 VKEMATELTELQGKLSDYNLTM 96 (168)
Q Consensus 75 ae~La~EI~~LQG~LADyNl~~ 96 (168)
+..|..+|++|+.++....--+
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~ 134 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEER 134 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555554444433
No 81
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=59.79 E-value=46 Score=23.99 Aligned_cols=87 Identities=10% Similarity=0.205 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc-----C----------------------------CC---HHHHH
Q psy14403 66 ATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNT-----Q----------------------------TN---IADIE 109 (168)
Q Consensus 66 s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t-----~----------------------------~d---~~~i~ 109 (168)
..+..|+...+.+...+..|+..+.||..+++-+.. + ++ --.+.
T Consensus 8 ~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE~~~~ 87 (133)
T 1fxk_C 8 AQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFE 87 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEEeeHH
Confidence 345556666666666666666666666666665433 1 11 02344
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14403 110 EEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDM 152 (168)
Q Consensus 110 ~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~ 152 (168)
+-..-|+.+-+...+.++.+-..-..+...++.++.+|++..+
T Consensus 88 eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 88 DAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5556677777888888888888888889999999999988764
No 82
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=59.23 E-value=40 Score=23.15 Aligned_cols=68 Identities=15% Similarity=0.079 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCC
Q psy14403 37 EGLLQLKIRDLTNEITRLKRQIELSAKE----HATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTN 104 (168)
Q Consensus 37 ~glLR~Ki~El~~EI~kL~~e~e~~~~e----~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d 104 (168)
.+-|+.-..+|..++..|...+..+... -.....|.........-.++|..-|.++...++....+..
T Consensus 20 a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~~l~~a~~~y~ 91 (103)
T 4i0x_B 20 TSRARGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQMEEAARTAHGAYS 91 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777788888888888888887755 5677788888888888889999999999999998877654
No 83
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ...
Probab=58.99 E-value=9.1 Score=28.53 Aligned_cols=23 Identities=13% Similarity=0.297 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSA 62 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~ 62 (168)
++.++..|...+..|+.++..+.
T Consensus 29 ~~~~l~~L~~~l~~Lq~~l~~l~ 51 (177)
T 1pwb_A 29 LRQQVEALQGQVQHLQAAFSQYK 51 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445556666666666555544
No 84
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=57.92 E-value=47 Score=23.46 Aligned_cols=47 Identities=17% Similarity=0.242 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14403 105 IADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLD 151 (168)
Q Consensus 105 ~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~ 151 (168)
...|..+++.++..|--....|-+.=...+..+.+++.++.+|++++
T Consensus 26 KQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 26 RQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577778888888888888877777777778888888888888854
No 85
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=56.58 E-value=49 Score=23.29 Aligned_cols=77 Identities=12% Similarity=0.190 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 65 HATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELE 144 (168)
Q Consensus 65 ~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE 144 (168)
|.-|.+|=-++..|-.+=+.|+.++..+ -.+.. ..+...| ...-...+..||.+..++...+-++..+.
T Consensus 15 NdRlAsyIdKVR~LEqqN~~Le~~i~~l---~~~~~-----~~~~~~y---e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~ 83 (93)
T 3s4r_A 15 NDRFANLIDKVRFLEQQNKILLAELEQL---KGQGK-----SRLGDLY---EEEMRELRRQVDQLTNDKARVEVERDNLA 83 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-----HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccC-----CCcHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677777777777777665433 22222 2233222 33445678999999999999999999999
Q ss_pred HHHHHHhh
Q psy14403 145 AEIEKLDM 152 (168)
Q Consensus 145 ~eie~~~~ 152 (168)
.++++.+.
T Consensus 84 ~~~~~~k~ 91 (93)
T 3s4r_A 84 EDIMRLRE 91 (93)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988753
No 86
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=56.53 E-value=95 Score=26.60 Aligned_cols=87 Identities=14% Similarity=0.172 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCC-------------HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Q psy14403 70 LYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTN-------------IADIEEEYLELRAANDIETRHLEEQFTERSKK 136 (168)
Q Consensus 70 ~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d-------------~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~ 136 (168)
..+++.+++...+...+..++..-.-+.+...... +..+...++++..+.+.++......+..-+..
T Consensus 364 ~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (487)
T 3oja_A 364 TLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHK 443 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhH
Confidence 34455555556666666666555555555555555 44556666667777777776666666665554
Q ss_pred HHHHH----HHHHHHHHHhhhhhh
Q psy14403 137 QHQLH----ELEAEIEKLDMIDIS 156 (168)
Q Consensus 137 E~~i~----~lE~eie~~~~~~~~ 156 (168)
++.++ .++.++++.+....+
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
T 3oja_A 444 ETQLAEENARLKKLNGEADLALAS 467 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhhhHh
Confidence 44333 455555555544443
No 87
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=56.09 E-value=47 Score=22.91 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCC
Q psy14403 67 TFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQT 103 (168)
Q Consensus 67 ~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~ 103 (168)
....-+.+.++|.++|.+....++....-+||+++-.
T Consensus 34 ELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSVl 70 (72)
T 3nmd_A 34 ELRQRDALIDELELELDQKDELIQMLQNELDKYRSVI 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3677788888888899999999988888888887743
No 88
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=55.61 E-value=97 Score=26.40 Aligned_cols=87 Identities=13% Similarity=0.181 Sum_probs=50.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHhhhHHHHHHHHHHHHHHHHHHHhHhH--
Q psy14403 32 DKRYYEGLLQLKIRDLTNEITRLKRQIELS--------------------AKEHATFLLYDKRVKEMATELTELQGKL-- 89 (168)
Q Consensus 32 DksYy~glLR~Ki~El~~EI~kL~~e~e~~--------------------~~e~s~~~~yekrae~La~EI~~LQG~L-- 89 (168)
+-.||...+..+|-.+.+.|-........+ ..=...-..++..++.+..+|++++.+|
T Consensus 76 hA~~W~d~~~p~Iv~~~~~I~~Y~~~f~syy~~L~~~~d~~d~~~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~ 155 (346)
T 2nrj_A 76 HAVTWDTKVKKQLLDTLNGIVEYDTTFDNYYETMVEAINTGDGETLKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGH 155 (346)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777777777777777776655542211 1112333455666666667777777766
Q ss_pred ------HHHHHHHHHhhc-CCCHHHHHHHHHHHHHh
Q psy14403 90 ------SDYNLTMDKVNT-QTNIADIEEEYLELRAA 118 (168)
Q Consensus 90 ------ADyNl~~Dk~~t-~~d~~~i~~e~~~Lk~~ 118 (168)
.|-|.+...+.+ +.+...++.+...+...
T Consensus 156 d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~ 191 (346)
T 2nrj_A 156 DVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGS 191 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGG
T ss_pred hHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 344444555543 45566666666655443
No 89
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=55.45 E-value=62 Score=24.14 Aligned_cols=70 Identities=14% Similarity=0.164 Sum_probs=35.8
Q ss_pred CCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q psy14403 22 LRGPGFRQVQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEH-----ATFLLYDKRVKEMATELTELQGKLSDYNL 94 (168)
Q Consensus 22 ~~Gp~~RQV~DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~-----s~~~~yekrae~La~EI~~LQG~LADyNl 94 (168)
..||| -.|--=-.-.|..--..|+.=..||++..+..+++. ++|..=+--++.|..=|.+|+.+|||-=.
T Consensus 16 ~~~~~---~~~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 16 TQGPG---SMTMEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp --------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCC---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888 233222233333333445555567777777776653 33333344466777777788888877543
No 90
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=55.36 E-value=38 Score=22.15 Aligned_cols=38 Identities=18% Similarity=0.136 Sum_probs=23.8
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14403 117 AANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMID 154 (168)
Q Consensus 117 ~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~ 154 (168)
...+.....++.+-.+...++..+..|+.|+..++.+.
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556666666666667777777777776654
No 91
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=55.34 E-value=43 Score=29.17 Aligned_cols=16 Identities=44% Similarity=0.617 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14403 43 KIRDLTNEITRLKRQI 58 (168)
Q Consensus 43 Ki~El~~EI~kL~~e~ 58 (168)
|+.++..||..|+++.
T Consensus 4 ~~~~~~~~~~~l~~~~ 19 (403)
T 4etp_A 4 KIAALKEKIAALKEKI 19 (403)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 92
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=54.99 E-value=58 Score=23.62 Aligned_cols=80 Identities=23% Similarity=0.288 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHH-HHHHHHHhhcCCCHHHHHHHHHHH
Q psy14403 37 EGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSD-YNLTMDKVNTQTNIADIEEEYLEL 115 (168)
Q Consensus 37 ~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LAD-yNl~~Dk~~t~~d~~~i~~e~~~L 115 (168)
+.-|......+..|+.+|..+ +.++......-|+....+..||.+|-..|=| -|.+|-.. ..+...+
T Consensus 14 l~~le~~~~~~~~e~~~L~~~---l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a---------r~e~~~~ 81 (97)
T 2eqb_B 14 YNTLKRELSDRDDEVKRLRED---IAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADA---------RKEKYAI 81 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHH
Confidence 344555666666666666544 4567777788899999999999999998865 45555444 4567788
Q ss_pred HHhcHHHHHHHHH
Q psy14403 116 RAANDIETRHLEE 128 (168)
Q Consensus 116 k~~N~~~~~~ld~ 128 (168)
+.+|++...+|..
T Consensus 82 e~kn~~L~~qL~d 94 (97)
T 2eqb_B 82 EILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 8888888887753
No 93
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ...
Probab=54.96 E-value=13 Score=27.63 Aligned_cols=8 Identities=0% Similarity=0.360 Sum_probs=4.1
Q ss_pred hhhhhhhh
Q psy14403 155 ISMWIDIS 162 (168)
Q Consensus 155 ~~~~~~~~ 162 (168)
...||-++
T Consensus 111 ~~~WIGl~ 118 (177)
T 1pwb_A 111 EAAFLSMT 118 (177)
T ss_dssp CCEECSCB
T ss_pred CcEEEEEe
Confidence 34566554
No 94
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=54.44 E-value=62 Score=23.81 Aligned_cols=48 Identities=17% Similarity=0.172 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy14403 38 GLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTEL 85 (168)
Q Consensus 38 glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~L 85 (168)
.-.+..+.+++.++..|+..++.+++++.-|-.==+..+-|.++..++
T Consensus 14 ~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~~~~ 61 (106)
T 4e61_A 14 TKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTTQDL 61 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678889999999999999999999998887777888888887765
No 95
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=53.27 E-value=57 Score=29.47 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q psy14403 41 QLKIRDLTNEITRLKRQIELSAKEH--------ATFLLYDKRVKEMATELTELQGKLSDYNLTMDK 98 (168)
Q Consensus 41 R~Ki~El~~EI~kL~~e~e~~~~e~--------s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk 98 (168)
+.+..+|.+|.+.+.++|-...+.. .....+-.++..|..+|++|+.++....--++.
T Consensus 83 ~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 83 REQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555554433221 133345556666666666666666665554443
No 96
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=53.26 E-value=67 Score=24.28 Aligned_cols=68 Identities=13% Similarity=0.250 Sum_probs=43.2
Q ss_pred ccc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-------HHHHHHHHHHHHHHHhHhHHHHHHHHH
Q psy14403 30 VQD-KRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLL-------YDKRVKEMATELTELQGKLSDYNLTMD 97 (168)
Q Consensus 30 V~D-ksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~-------yekrae~La~EI~~LQG~LADyNl~~D 97 (168)
+.+ ..-|+.-.=.++.+|..+|.+|...+..+.+-+..++. ...+.+.+..+|+.+-..+-..=-.++
T Consensus 30 ~~~~~~~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~ 105 (180)
T 1s94_A 30 QVDSGGGFMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIE 105 (180)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 56677778889999999999999988888887766443 345555666666655554444433333
No 97
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=52.70 E-value=27 Score=25.76 Aligned_cols=50 Identities=22% Similarity=0.238 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHH
Q psy14403 67 TFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRH 125 (168)
Q Consensus 67 ~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ 125 (168)
.|..+|++++.+..|-.-|+-. ....+..+.+++.+...|+..|.+...+
T Consensus 38 EYl~LE~~~s~le~e~~rlr~~---------~~~~~~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 38 EYLELEKSLSRMEDENNRLRLE---------SKRLDARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------hccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4777788888777777666654 1112456777888888888888776554
No 98
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=52.63 E-value=44 Score=21.56 Aligned_cols=22 Identities=5% Similarity=0.131 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14403 42 LKIRDLTNEITRLKRQIELSAK 63 (168)
Q Consensus 42 ~Ki~El~~EI~kL~~e~e~~~~ 63 (168)
.|+..|.+.+..|..+++.+..
T Consensus 4 aki~~Lss~V~~L~~kVdqLss 25 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASN 25 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3666677777777666666555
No 99
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=52.10 E-value=29 Score=23.01 Aligned_cols=38 Identities=24% Similarity=0.305 Sum_probs=28.4
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14403 110 EEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMID 154 (168)
Q Consensus 110 ~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~ 154 (168)
.....||..|......+. ..|.++.+.|.||+++.++-
T Consensus 11 ~q~~kLKq~n~~L~~kv~-------~Le~~c~e~eQEieRL~~LL 48 (58)
T 3a2a_A 11 RQLLRLKQMNVQLAAKIQ-------HLEFSCSEKEQEIERLNKLL 48 (58)
T ss_dssp CHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 355678888887776664 55788888889998888764
No 100
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=51.20 E-value=70 Score=23.44 Aligned_cols=12 Identities=25% Similarity=0.454 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH
Q psy14403 42 LKIRDLTNEITR 53 (168)
Q Consensus 42 ~Ki~El~~EI~k 53 (168)
.|+.+++....+
T Consensus 17 ~K~eel~~~~~~ 28 (131)
T 3tnu_A 17 TKTEELNREVAT 28 (131)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHh
Confidence 345555444444
No 101
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=50.79 E-value=94 Score=24.85 Aligned_cols=92 Identities=11% Similarity=0.242 Sum_probs=41.9
Q ss_pred hhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc--CCCHH
Q psy14403 33 KRYYEGLLQ---LKIRDLTNEITRLKRQIELSAKE-HATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNT--QTNIA 106 (168)
Q Consensus 33 ksYy~glLR---~Ki~El~~EI~kL~~e~e~~~~e-~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t--~~d~~ 106 (168)
-.||..+.. .+..++..|.+-|+..=..++.+ .......+++...|...+..|.-++..+..=.+...+ +....
T Consensus 12 ~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~ 91 (189)
T 2v71_A 12 TAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVS 91 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368866443 33444444544444433333332 1234455555555555555555555554333332222 12244
Q ss_pred HHHHHHHHHHHhcHHHHH
Q psy14403 107 DIEEEYLELRAANDIETR 124 (168)
Q Consensus 107 ~i~~e~~~Lk~~N~~~~~ 124 (168)
.+..++..|+..++....
T Consensus 92 ~Lq~el~~l~~~~~~l~~ 109 (189)
T 2v71_A 92 VLEDDLSQTRAIKEQLHK 109 (189)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444333
No 102
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=50.62 E-value=64 Score=22.84 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=39.5
Q ss_pred hhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Q psy14403 33 KRYYEGLL---QLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQG 87 (168)
Q Consensus 33 ksYy~glL---R~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG 87 (168)
..||.-+= |.-..+.-.|-.+|+++++..+.+-+.+..--++..+||..++-|-+
T Consensus 19 e~YWk~lAE~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~ 76 (83)
T 1wlq_A 19 SQYWKEVAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAE 76 (83)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46887654 33345566788888888888888888777777777777777766543
No 103
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=49.85 E-value=1.1e+02 Score=25.43 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy14403 37 EGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMAT 80 (168)
Q Consensus 37 ~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~ 80 (168)
+.-|-.||.--.++|+.|+.|.....+-+-.|.+|.=+.++|.+
T Consensus 100 iarllekiqkyfQ~IEtlK~ql~nf~e~RLiYDHYKlKvdELEK 143 (294)
T 3caz_A 100 IARLLEKIQKYRQEIEEIKKEYKETDKYRERYDHYKVKLDNLEK 143 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHh
Confidence 45677899999999999999999999999999999999999877
No 104
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=49.66 E-value=30 Score=23.39 Aligned_cols=29 Identities=28% Similarity=0.268 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 34 RYYEGLLQLKIRDLTNEITRLKRQIELSA 62 (168)
Q Consensus 34 sYy~glLR~Ki~El~~EI~kL~~e~e~~~ 62 (168)
-=|+.-|+..+.++..|++.|..+...+.
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~ 74 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666655555544443
No 105
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=49.06 E-value=14 Score=23.82 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=12.9
Q ss_pred CCHHHHHHHHHHHHHhcHHHHHHHHH
Q psy14403 103 TNIADIEEEYLELRAANDIETRHLEE 128 (168)
Q Consensus 103 ~d~~~i~~e~~~Lk~~N~~~~~~ld~ 128 (168)
.|++.+..+..+|+.+++...+++++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~e 44 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKK 44 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555544444443
No 106
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=48.97 E-value=67 Score=22.64 Aligned_cols=51 Identities=27% Similarity=0.363 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHH
Q psy14403 37 EGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLS 90 (168)
Q Consensus 37 ~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LA 90 (168)
++.||-|++|+-+| |++-|...-.. .+.+..+++..+.=-.||+-||++|.
T Consensus 28 i~~Lr~kv~elEnE--rlQyEkKLKsT-K~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 28 LRHLKIKVEELENE--RNQYEWKLKAT-KAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHhhh-HHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 46688899988776 44444433322 26677888888888889999999985
No 107
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=48.95 E-value=83 Score=23.68 Aligned_cols=34 Identities=18% Similarity=0.382 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy14403 126 LEEQFTERSKKQHQLHELEAEIEKLDMIDISMWIDIST 163 (168)
Q Consensus 126 ld~iF~eR~~~E~~i~~lE~eie~~~~~~~~~~~~~~~ 163 (168)
+...+.+=++++.+|++||.-|.+++.+ |.|+++
T Consensus 157 ~~~~l~~i~eR~~eI~~IE~sI~EL~qi----F~Dla~ 190 (196)
T 1fio_A 157 AKTALAEVQARHQELLKLEKSMAELTQL----FNDMEE 190 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 4455667788899999999999998876 455544
No 108
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=48.78 E-value=8.5 Score=33.85 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHH
Q psy14403 73 KRVKEMATELTELQGKLSDYNLTMD 97 (168)
Q Consensus 73 krae~La~EI~~LQG~LADyNl~~D 97 (168)
.++..|..+|++|+.++....--++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T 2dq3_A 75 NRVKELKEEIDRLEEELRKVEEELK 99 (425)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555444333
No 109
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=48.74 E-value=28 Score=22.52 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 36 YEGLLQLKIRDLTNEITRLKRQIE 59 (168)
Q Consensus 36 y~glLR~Ki~El~~EI~kL~~e~e 59 (168)
|+.-|..++.+|..|-..|..++.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~ 46 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTAN 46 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443333
No 110
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=48.60 E-value=55 Score=21.56 Aligned_cols=66 Identities=14% Similarity=0.134 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCC
Q psy14403 38 GLLQLKIRDLTNEITRLKRQIELSAK--EHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQT 103 (168)
Q Consensus 38 glLR~Ki~El~~EI~kL~~e~e~~~~--e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~ 103 (168)
+-|+....+|..++..|...+..+.- .-+....|............++..-|.++...++....+.
T Consensus 15 ~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~~~~~L~~i~~~l~~~~~~y 82 (94)
T 3fav_B 15 SAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLARTISEAGQAM 82 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGGGGTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666655532 2234456777777777777777777888887777776643
No 111
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=48.54 E-value=32 Score=23.60 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=26.1
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14403 30 VQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKE 64 (168)
Q Consensus 30 V~DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e 64 (168)
.....=|+.-|+.+...+..|+..|..+.+.+.+.
T Consensus 42 L~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 42 LTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556688888888888888888888887766543
No 112
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=48.54 E-value=1.4e+02 Score=27.41 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=5.8
Q ss_pred HHHHHHHHHHhhc
Q psy14403 89 LSDYNLTMDKVNT 101 (168)
Q Consensus 89 LADyNl~~Dk~~t 101 (168)
|+-||..+.+.+.
T Consensus 68 l~kY~~dlakY~~ 80 (497)
T 3iox_A 68 LAKYQADLAKYQK 80 (497)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 113
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=47.91 E-value=91 Score=23.86 Aligned_cols=77 Identities=12% Similarity=0.143 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14403 73 KRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLD 151 (168)
Q Consensus 73 krae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~ 151 (168)
..++.|..+|.+-.-.|+|||-.+..--. +-..+...+.+...--...-.++.....+=+.+-..+..+-.++....
T Consensus 68 ~~~e~l~~~veeA~~~L~eYn~rL~~E~~--dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi 144 (152)
T 4fla_A 68 EAAERLSKTVDEACLLLAEYNGRLAAELE--DRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHI 144 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35788899999999999999988765432 122223333333333333444556667777777778887777776643
No 114
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=47.46 E-value=74 Score=27.17 Aligned_cols=64 Identities=16% Similarity=0.287 Sum_probs=35.2
Q ss_pred cchhhhHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHhHhHHH
Q psy14403 31 QDKRYYEGLLQL----------------KIRDLTNEITRLKRQIELSAKE---HATFLLYDKRVKEMATELTELQGKLSD 91 (168)
Q Consensus 31 ~DksYy~glLR~----------------Ki~El~~EI~kL~~e~e~~~~e---~s~~~~yekrae~La~EI~~LQG~LAD 91 (168)
.+.+||..++.. -+.+++.++.+|.++++++++. +..-....++.+++.+.+..++-+++.
T Consensus 220 ~~~~yf~~l~~~~~~~~~l~lA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 299 (426)
T 1lrz_A 220 RDDKFYYNRLKYYKDRVLVPLAYINFDEYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEE 299 (426)
T ss_dssp -CHHHHHHHHHHHGGGEECEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCcEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488888887642 2345555666666555555421 111134456666666666666666665
Q ss_pred HHH
Q psy14403 92 YNL 94 (168)
Q Consensus 92 yNl 94 (168)
...
T Consensus 300 ~~~ 302 (426)
T 1lrz_A 300 GKR 302 (426)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 115
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=47.31 E-value=79 Score=22.94 Aligned_cols=43 Identities=23% Similarity=0.257 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q psy14403 52 TRLKRQIELSAKE-----HATFLLYDKRVKEMATELTELQGKLSDYNL 94 (168)
Q Consensus 52 ~kL~~e~e~~~~e-----~s~~~~yekrae~La~EI~~LQG~LADyNl 94 (168)
.||+.....++++ .++|.+=.--+..|..=|.+|+.+|||.=.
T Consensus 26 QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 26 QKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444443 233333333466777777788888877644
No 116
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=47.18 E-value=54 Score=22.48 Aligned_cols=56 Identities=14% Similarity=0.301 Sum_probs=34.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH---HHHHHHHHHHHHHhHhHHH
Q psy14403 33 KRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYD---KRVKEMATELTELQGKLSD 91 (168)
Q Consensus 33 ksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~ye---krae~La~EI~~LQG~LAD 91 (168)
-||- .+.....|-.+|.+|..++..++..-+.-..|. .+...+..++.+++.+|..
T Consensus 16 LSyk---eqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~ 74 (89)
T 2lw1_A 16 LSYK---LQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQ 74 (89)
T ss_dssp CCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 4563 455677777788888887777777665433332 3455566666666665543
No 117
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=46.72 E-value=23 Score=20.02 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 39 LLQLKIRDLTNEITRLKRQIELS 61 (168)
Q Consensus 39 lLR~Ki~El~~EI~kL~~e~e~~ 61 (168)
-|.+|..-+.+||..|.=|+-.+
T Consensus 4 rlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHh
Confidence 36677777777777776666543
No 118
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=46.35 E-value=58 Score=21.11 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=5.6
Q ss_pred HHHHHHHHHhHhHH
Q psy14403 77 EMATELTELQGKLS 90 (168)
Q Consensus 77 ~La~EI~~LQG~LA 90 (168)
.|..+|..|+.+++
T Consensus 41 ~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 41 ALQTEIANLLKEKE 54 (63)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444433
No 119
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=46.12 E-value=55 Score=20.81 Aligned_cols=40 Identities=18% Similarity=0.387 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHH
Q psy14403 49 NEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSD 91 (168)
Q Consensus 49 ~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LAD 91 (168)
.-|.+|++..-+++++... +||-.-.|..||..|+.+.|.
T Consensus 10 kkiarlkkdnlqlerdeqn---lekiianlrdeiarlenevas 49 (52)
T 3he5_B 10 KKIARLKKDNLQLERDEQN---LEKIIANLRDEIARLENEVAS 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhhhhhhhhhhHhh---HHHHHHHHHHHHHHHHHHHhh
Confidence 3456777777777776654 566677788888888877653
No 120
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=45.86 E-value=88 Score=27.35 Aligned_cols=92 Identities=16% Similarity=0.149 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHH
Q psy14403 42 LKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDI 121 (168)
Q Consensus 42 ~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~ 121 (168)
.|+..+..++..|.+++.. ..+..=.+++..+.+|.+.|+..+..|+.+...+. ++.++.+-..
T Consensus 3 ~~l~~~~~r~~el~~~~~~-----p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~----------~~~~~~el~~- 66 (354)
T 3d5a_X 3 DKLDRLEEEYRELEALLSD-----PEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLE----------DLEQAESLLD- 66 (354)
T ss_dssp HHHHHHTHHHHHHHHHTTS-----TTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHTSTT-
T ss_pred hHHHHHHHHHHHHHHHhcC-----CchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhc-
Confidence 3455555555555444321 11112245666777777777777766665544332 2222222211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 122 ETRHLEEQFTERSKKQHQLHELEAEIEK 149 (168)
Q Consensus 122 ~~~~ld~iF~eR~~~E~~i~~lE~eie~ 149 (168)
..+-.+.+-.+-...+..+..+|.++..
T Consensus 67 D~e~~~~a~~e~~~l~~~~~~le~~l~~ 94 (354)
T 3d5a_X 67 DPELKEMAKAEREALLARKEALEKELER 94 (354)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222333444445556666666665554
No 121
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=45.60 E-value=57 Score=29.49 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHhHhHH
Q psy14403 73 KRVKEMATELTELQGKLS 90 (168)
Q Consensus 73 krae~La~EI~~LQG~LA 90 (168)
.+.++|..++++++.+|.
T Consensus 118 ~~i~~le~~~~~~~~~~~ 135 (484)
T 3lss_A 118 DQVAGLAKEAQQLEEERD 135 (484)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444433
No 122
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=45.57 E-value=59 Score=24.51 Aligned_cols=40 Identities=28% Similarity=0.388 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhh
Q psy14403 58 IELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVN 100 (168)
Q Consensus 58 ~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~ 100 (168)
.+.+.++.+.- ++++++|..||++|--+|.|--.-|+.++
T Consensus 59 ~~SL~~ekaq~---q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr 98 (121)
T 3mq7_A 59 MASLDAEKAQG---QKKVEELEGEITTLNHKLQDASAEVERLR 98 (121)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 123
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=45.43 E-value=1.1e+02 Score=24.19 Aligned_cols=108 Identities=12% Similarity=0.106 Sum_probs=74.0
Q ss_pred CCcccccchhhh--HHHHHHH-------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhH
Q psy14403 25 PGFRQVQDKRYY--EGLLQLK-------------IRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKL 89 (168)
Q Consensus 25 p~~RQV~DksYy--~glLR~K-------------i~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~L 89 (168)
|-...+.++|+= ..+|... ..+++.++..+...++....-...|........++..+++.|+.+.
T Consensus 30 ~LP~~L~~LS~~eL~~LL~~~~dlL~~~v~~l~~~q~~~~~~e~l~s~ae~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~ 109 (192)
T 2p22_C 30 PLPEGINLLSSKEIIDLIQTHRHQLELYVTKFNPLTDFAGKIHAFRDQFKQLEENFEDLHEQKDKVQALLENARILESKY 109 (192)
T ss_dssp CCSSGGGSCTTHHHHHHHHHCHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHhCCHHHHHHHHhChHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 555678877753 3444333 3456677777766666665444555555556666666777777776
Q ss_pred HHHHHHH-HHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Q psy14403 90 SDYNLTM-DKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTE 132 (168)
Q Consensus 90 ADyNl~~-Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~e 132 (168)
..--.-+ +.+..+.+|+.+..-+...-+.++.....|.+=|..
T Consensus 110 ~~k~q~~~~~ls~~~sp~~L~~~L~~a~~e~eeeS~~l~~~F~~ 153 (192)
T 2p22_C 110 VASWQDYHSEFSKKYGDIALKKKLEQNTKKLDEESSQLETTTRS 153 (192)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5544555 477788999999998888888888888888888865
No 124
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=45.39 E-value=44 Score=19.50 Aligned_cols=15 Identities=40% Similarity=0.603 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy14403 45 RDLTNEITRLKRQIE 59 (168)
Q Consensus 45 ~El~~EI~kL~~e~e 59 (168)
..+.+||..|++|+-
T Consensus 5 aalkqeiaalkkeia 19 (33)
T 4dzn_A 5 AALKQEIAALKKEIA 19 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 125
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=44.87 E-value=77 Score=22.14 Aligned_cols=41 Identities=24% Similarity=0.291 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhhh--HHHHHHHH---HHHHHHHHHHHhHhHHHH
Q psy14403 52 TRLKRQIELSAKEHA--TFLLYDKR---VKEMATELTELQGKLSDY 92 (168)
Q Consensus 52 ~kL~~e~e~~~~e~s--~~~~yekr---ae~La~EI~~LQG~LADy 92 (168)
.||+...+.++++.. +...|++| ++.|..=|.+|+++|||-
T Consensus 26 QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~ 71 (78)
T 2ic6_A 26 QKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADL 71 (78)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554322 22344444 566667777777777764
No 126
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=44.72 E-value=1.9e+02 Score=26.51 Aligned_cols=81 Identities=15% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHH---------------HHHHHHhhcCCCHHHHHHHH-HHHHHhcHHHHHHHHHHHHHH
Q psy14403 70 LYDKRVKEMATELTELQGKLSDY---------------NLTMDKVNTQTNIADIEEEY-LELRAANDIETRHLEEQFTER 133 (168)
Q Consensus 70 ~yekrae~La~EI~~LQG~LADy---------------Nl~~Dk~~t~~d~~~i~~e~-~~Lk~~N~~~~~~ld~iF~eR 133 (168)
.+.+--.....=|.+|...|+|| |++-.++...-+-+.+.+++ .+|+.+-.-..+.||.-|..=
T Consensus 55 lL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~I 134 (491)
T 1m1j_A 55 IIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRI 134 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14403 134 SKKQHQLHELEAEIEKL 150 (168)
Q Consensus 134 ~~~E~~i~~lE~eie~~ 150 (168)
+.+-..|+.+-.+|+++
T Consensus 135 rvLq~~l~~q~skIQRL 151 (491)
T 1m1j_A 135 KALQNSIQEQVVEMKRL 151 (491)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
No 127
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=44.43 E-value=79 Score=22.16 Aligned_cols=65 Identities=9% Similarity=0.269 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-------HHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q psy14403 34 RYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLL-------YDKRVKEMATELTELQGKLSDYNLTMDK 98 (168)
Q Consensus 34 sYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~-------yekrae~La~EI~~LQG~LADyNl~~Dk 98 (168)
+-|+.-.-.++.+|..+|.+|...++.+..-+..+++ ..++.+.+..+|+.+-..+-+-=-.++.
T Consensus 4 ~~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~ 75 (127)
T 1ez3_A 4 DRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQ 75 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667788999999999999999988888887764 6667777777777766555544444433
No 128
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=44.42 E-value=88 Score=22.68 Aligned_cols=81 Identities=16% Similarity=0.147 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 66 ATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEA 145 (168)
Q Consensus 66 s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~ 145 (168)
..|..+.++.+.|..|...|.-+.+-+=+=+.+.+...+..-- .+.-|+-. .+=....+++.++.+.+|..
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~--~TKVlH~~-------~NPa~~a~~~~~~~~e~Lq~ 82 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQS--RTKVLHMS-------LNPTSVARQRLREDHSQLQA 82 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTT--TEEEEEES-------SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCc--cCeeeeec-------CChHHHHHHHHHHHHHHHHH
Confidence 3677777777777777777777776665555553332111000 00000000 00112334455567777777
Q ss_pred HHHHHhhhhh
Q psy14403 146 EIEKLDMIDI 155 (168)
Q Consensus 146 eie~~~~~~~ 155 (168)
|++.++..+-
T Consensus 83 E~erLr~~v~ 92 (100)
T 1go4_E 83 ECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 7777766553
No 129
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=44.04 E-value=65 Score=22.80 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Q psy14403 43 KIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQG 87 (168)
Q Consensus 43 Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG 87 (168)
-+..|..+|+.+..++..+..++..+..+=..+.-||.=|..|-|
T Consensus 39 EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~~i~~L~~ 83 (83)
T 1wlq_A 39 ENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIERLSN 83 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345566666666666666666677777777777778877777644
No 130
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=43.81 E-value=5.9 Score=29.79 Aligned_cols=17 Identities=6% Similarity=0.139 Sum_probs=13.2
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy14403 102 QTNIADIEEEYLELRAA 118 (168)
Q Consensus 102 ~~d~~~i~~e~~~Lk~~ 118 (168)
+.|+.+++.-...++.+
T Consensus 81 ~~d~~~lr~~~~~l~~~ 97 (171)
T 2zvf_A 81 DADMQALQKLAERLAEK 97 (171)
T ss_dssp SCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhcC
Confidence 67888888888877765
No 131
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=43.51 E-value=2e+02 Score=26.61 Aligned_cols=53 Identities=13% Similarity=0.191 Sum_probs=42.2
Q ss_pred hcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14403 100 NTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDM 152 (168)
Q Consensus 100 ~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~ 152 (168)
|.++|+.-+...|.+++..-......|..+...|+++|..-+..|..+++++.
T Consensus 399 ~~~~dv~~~~a~~d~~~~~~s~~~~~ls~~me~Rkq~e~k~k~ae~kl~~e~~ 451 (551)
T 2b5u_A 399 RAQTDVNNKQAAFDAAAKEKSDADAALSSAMESRKKKEDKKRSAENNLNDEKN 451 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhhhhhhhHHHHHHHHhhcccchhhhhhhhhhcccchhhhhhhhhhccchhhh
Confidence 33556666677777777666777778889999999999999999999998753
No 132
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=43.17 E-value=1.7e+02 Score=25.60 Aligned_cols=18 Identities=22% Similarity=0.470 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy14403 134 SKKQHQLHELEAEIEKLD 151 (168)
Q Consensus 134 ~~~E~~i~~lE~eie~~~ 151 (168)
...++++..++.+++++.
T Consensus 97 ~~a~~e~~~l~~~l~~le 114 (365)
T 1gqe_A 97 NEAVAELDALEEKLAQLE 114 (365)
T ss_dssp HHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555666666665544
No 133
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=43.07 E-value=96 Score=22.72 Aligned_cols=54 Identities=20% Similarity=0.245 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHH
Q psy14403 34 RYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLS 90 (168)
Q Consensus 34 sYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LA 90 (168)
.|=+-+|+-++.|+......++++.....++ +....+-...|..++..|+++|.
T Consensus 29 ~YqVdlLKD~LEe~eE~~aql~Re~~eK~re---~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 29 MYQVDTLKDMLLELEEQLAESRRQYEEKNKE---FEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777777776665554 33444455566666666666664
No 134
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=42.92 E-value=81 Score=23.42 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKE 64 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e 64 (168)
|..+..+|+.+|..+.++++.+.+.
T Consensus 5 L~~~~~~L~~~i~~l~~~L~~lkqa 29 (122)
T 3viq_A 5 LLSRRLKLEKEVRNLQEQLITAETA 29 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666665544
No 135
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=42.79 E-value=72 Score=22.58 Aligned_cols=78 Identities=13% Similarity=0.162 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHH--------HHHHHH
Q psy14403 65 HATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQF--------TERSKK 136 (168)
Q Consensus 65 ~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF--------~eR~~~ 136 (168)
.+.|..||+.+..+..+|+..=+++. ...+.++=...+.++....+...+-|+.+= ..|...
T Consensus 14 SelFe~YE~df~~l~~~i~~kl~~i~----------~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~ 83 (102)
T 2qyw_A 14 SEHFEKLHEIFRGLLEDLQGVPERLL----------GTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPM 83 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----------TCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc----------ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 47899999999999888876655542 212223333333333333333333333322 235555
Q ss_pred HHHHHHHHHHHHHHhh
Q psy14403 137 QHQLHELEAEIEKLDM 152 (168)
Q Consensus 137 E~~i~~lE~eie~~~~ 152 (168)
-..++.-..++..+++
T Consensus 84 ~~klr~Yk~dL~~lk~ 99 (102)
T 2qyw_A 84 MSKLRNYRKDLAKLHR 99 (102)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5666666666665543
No 136
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=42.41 E-value=33 Score=22.01 Aligned_cols=22 Identities=9% Similarity=0.253 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELS 61 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~ 61 (168)
||..+.+|..+++.|+++++..
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 137
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=42.21 E-value=71 Score=20.99 Aligned_cols=63 Identities=10% Similarity=0.109 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc---CCCHHHHHHHHHHHHHhcHHHHHHHHHH
Q psy14403 67 TFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNT---QTNIADIEEEYLELRAANDIETRHLEEQ 129 (168)
Q Consensus 67 ~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t---~~d~~~i~~e~~~Lk~~N~~~~~~ld~i 129 (168)
.|..++.-+..+..-...|++.|.+....++.+.+ |.....-.....+....-.+....|+.|
T Consensus 6 ~~~~l~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~~~~~L~~i 71 (94)
T 3fav_B 6 NFAGIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNL 71 (94)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777888888888888888888888888865 5556666666666666666666666555
No 138
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=42.11 E-value=85 Score=21.82 Aligned_cols=36 Identities=8% Similarity=0.368 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHh
Q psy14403 64 EHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKV 99 (168)
Q Consensus 64 e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~ 99 (168)
.+.....+..+.+.|..||..|.|++-..+.-+..+
T Consensus 18 ~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 18 HSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345567788888888888888888886655544444
No 139
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=42.09 E-value=86 Score=26.89 Aligned_cols=48 Identities=17% Similarity=0.113 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH
Q psy14403 42 LKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDY 92 (168)
Q Consensus 42 ~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADy 92 (168)
.|++.|..||.+|..-+... .+....++...+.+...|.+|+.+|+++
T Consensus 5 ~~~~~~~~~~~~~e~~i~~~---~~~i~~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 5 KTVQKILEEVRILEQIGVSH---DAQIQELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667777777776543332 3444555666666666677776666543
No 140
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=41.84 E-value=78 Score=21.35 Aligned_cols=48 Identities=23% Similarity=0.236 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhH
Q psy14403 39 LLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKL 89 (168)
Q Consensus 39 lLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~L 89 (168)
-|+.||.-+..|........+..+. .+...++++..+-.||..|+-++
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~---~l~~~e~~~~~~E~ev~~L~kKi 50 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEA---DKKAAEERSKQLEDELVALQKKL 50 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHH
Confidence 3677888888888777666655543 23444444444444444444443
No 141
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=41.35 E-value=1.1e+02 Score=23.06 Aligned_cols=84 Identities=15% Similarity=0.210 Sum_probs=48.4
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHH---HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q psy14403 61 SAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIA---DIEEEYLELRAANDIETRHLEEQFTERSKKQ 137 (168)
Q Consensus 61 ~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~---~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E 137 (168)
+..-...|..+-.+......++.++...|.+|-- +...||+ .|+.-...|..---+-...++.|+.-+....
T Consensus 82 l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~-----~le~DP~rL~~ie~RL~~l~~L~RKyg~~~eell~~~~~~~ 156 (175)
T 4abx_A 82 GAKYDETVMQLQNELRAALESVQAIAGELRDVAE-----GSAADPEALDRVEARLSALSKLKNKYGPTLEDVVEFGAQAA 156 (175)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TCCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3333334444555555555555555555555432 2246777 4444444444444444457899999999988
Q ss_pred HHHHHHHHHHHH
Q psy14403 138 HQLHELEAEIEK 149 (168)
Q Consensus 138 ~~i~~lE~eie~ 149 (168)
.++..++.-=+.
T Consensus 157 ~eL~~l~~~~~~ 168 (175)
T 4abx_A 157 EELAGLEEDERD 168 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhCcHHH
Confidence 888887654333
No 142
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=41.21 E-value=69 Score=22.66 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=25.1
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14403 118 ANDIETRHLEEQFTERSKKQHQLHELEAEIEKLD 151 (168)
Q Consensus 118 ~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~ 151 (168)
-.++.+..|++.|.+.+.+=..|..++++|..++
T Consensus 33 lAE~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk 66 (83)
T 1uii_A 33 VAEKRRKALYEALKENEKLHKEIEQKDNEIARLK 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778888888888888777777777775544
No 143
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=40.65 E-value=76 Score=21.43 Aligned_cols=51 Identities=16% Similarity=0.216 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q psy14403 43 KIRDLTNEITRLKRQIELSA--KEHATFLLYDKRVKEMATELTELQGKLSDYN 93 (168)
Q Consensus 43 Ki~El~~EI~kL~~e~e~~~--~e~s~~~~yekrae~La~EI~~LQG~LADyN 93 (168)
+.+.+..|+-.|+.|.-... -+=+-|.-+.++.+.|..||..+-.+|..-|
T Consensus 7 ~~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~~ 59 (65)
T 3sja_C 7 KYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSEN 59 (65)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 44555666666665554321 2235577888899999999999998887654
No 144
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=40.40 E-value=1.4e+02 Score=23.98 Aligned_cols=60 Identities=17% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy14403 44 IRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLEL 115 (168)
Q Consensus 44 i~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~L 115 (168)
|..|+.|...|..+++ ..+.+.+.|..+|..|..+...+..-..+... .++-+.+-|..|
T Consensus 22 V~~L~~En~~L~~ql~----------~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e--~i~i~~DL~e~L 81 (190)
T 4emc_A 22 VANLVNENFVLSEKLD----------TKATEIKQLQKQIDSLNAQVKELKTQTSQQAE--NSEVIKDLYEYL 81 (190)
T ss_dssp HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH--hhhHHHHHHHHc
No 145
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=40.36 E-value=92 Score=21.74 Aligned_cols=45 Identities=27% Similarity=0.287 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 105 IADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEK 149 (168)
Q Consensus 105 ~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~ 149 (168)
..|+.....+|...++-.+.++..+-..|...+..++.+|+|+.+
T Consensus 32 k~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 32 KNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555666666666666666666666677777777777776643
No 146
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=39.85 E-value=1.2e+02 Score=23.07 Aligned_cols=97 Identities=12% Similarity=0.150 Sum_probs=50.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hh--H----------HHHHHHHHHHHHHHHHHHhHhHHHH--
Q psy14403 34 RYYEGLLQLKIRDLTNEITRLKRQIELSAKE-------HA--T----------FLLYDKRVKEMATELTELQGKLSDY-- 92 (168)
Q Consensus 34 sYy~glLR~Ki~El~~EI~kL~~e~e~~~~e-------~s--~----------~~~yekrae~La~EI~~LQG~LADy-- 92 (168)
.=|.-.||.-+++|..+|.+|+.+....... .. . -..|..+.-.+..-|..+.-+|...
T Consensus 13 r~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt~~~ 92 (179)
T 2gd5_A 13 NEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLA 92 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788888888888888888776554321 00 0 1112222222333333333333333
Q ss_pred -----------HHHHHHhhcCCCHHHHHHHHHHHHHhcHHH---HHHHHHHH
Q psy14403 93 -----------NLTMDKVNTQTNIADIEEEYLELRAANDIE---TRHLEEQF 130 (168)
Q Consensus 93 -----------Nl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~---~~~ld~iF 130 (168)
+-+|.+++..+++..|..--.++..+++.. .+-++..|
T Consensus 93 ~~~v~~am~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~ 144 (179)
T 2gd5_A 93 VLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTF 144 (179)
T ss_dssp HHHHTSSCCCCSHHHHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336777788887666666666666666655 44454444
No 147
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=38.92 E-value=48 Score=19.72 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHH
Q psy14403 70 LYDKRVKEMATELTELQGKLSDYNL 94 (168)
Q Consensus 70 ~yekrae~La~EI~~LQG~LADyNl 94 (168)
++|.++++|..+-.+|+.+.+-..-
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4566666666666666666554443
No 148
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=38.90 E-value=1.1e+02 Score=22.12 Aligned_cols=80 Identities=15% Similarity=0.101 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHH
Q psy14403 44 IRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIET 123 (168)
Q Consensus 44 i~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~ 123 (168)
..++..++..|..+++.+. ..-+.++++-...|..|+++|+.==- +...+...+..+...+....
T Consensus 24 ~~e~e~~k~eL~~~~~~~~------~~~~~k~~eq~~~le~lk~eL~~~~~---------el~~lq~~l~~~~~~~~~l~ 88 (107)
T 2no2_A 24 QVDLEREKKELEDSLERIS------DQGQRKTQEQLEVLESLKQELATSQR---------ELQVLQGSLETSAQSEANWA 88 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555444 33445566666666677777665111 11224445566666666666
Q ss_pred HHHHHHHHHHHHHHH
Q psy14403 124 RHLEEQFTERSKKQH 138 (168)
Q Consensus 124 ~~ld~iF~eR~~~E~ 138 (168)
..++.|=.+|..++.
T Consensus 89 ~~~~~l~~Ek~~L~~ 103 (107)
T 2no2_A 89 AEFAELEKERDSLVS 103 (107)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHh
Confidence 666666666665543
No 149
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=38.73 E-value=2.1 Score=37.21 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=5.7
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 113 LELRAANDIETRHLEEQFTERSKKQHQLHELEAEI 147 (168)
Q Consensus 113 ~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~ei 147 (168)
.++..++...++.+|+.+.+|++.+..+++.|.++
T Consensus 336 ~~~~~~~~e~~kklee~~~~r~e~~~~~~~~e~~~ 370 (386)
T 2bnx_A 336 EKSEAKATELEKKLDSELTARHELQVEMKKMENDF 370 (386)
T ss_dssp HHHHTTTCC--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34566677789999999999999999999988874
No 150
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=38.71 E-value=96 Score=21.45 Aligned_cols=35 Identities=11% Similarity=0.038 Sum_probs=22.7
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 28 RQVQDKRYYEGLLQLKIRDLTNEITRLKRQIELSA 62 (168)
Q Consensus 28 RQV~DksYy~glLR~Ki~El~~EI~kL~~e~e~~~ 62 (168)
.+++..-.-+.-|+.++..+...|..+..++....
T Consensus 6 ~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~ 40 (117)
T 2zqm_A 6 PQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAK 40 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666777777777777777766665544
No 151
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=38.66 E-value=92 Score=21.24 Aligned_cols=70 Identities=10% Similarity=0.066 Sum_probs=38.5
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------------------hHHHHHHHHHHHHHHHHH
Q psy14403 30 VQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEH--------------------------ATFLLYDKRVKEMATELT 83 (168)
Q Consensus 30 V~DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~--------------------------s~~~~yekrae~La~EI~ 83 (168)
++....=++-|+.++..+...+..+..++.....-. .+...++++.+.+..+|+
T Consensus 3 ~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~ 82 (107)
T 1fxk_A 3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREK 82 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 333444445566666666666666666555443322 223455666666666666
Q ss_pred HHhHhHHHHHHHHHHh
Q psy14403 84 ELQGKLSDYNLTMDKV 99 (168)
Q Consensus 84 ~LQG~LADyNl~~Dk~ 99 (168)
.|+.++.+...-+..+
T Consensus 83 ~le~~~~~~~~~l~~l 98 (107)
T 1fxk_A 83 TIERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666555544443
No 152
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=37.96 E-value=83 Score=20.50 Aligned_cols=63 Identities=13% Similarity=0.150 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhh
Q psy14403 38 GLLQLKIRDLTNEITRLKRQIELSA--KEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVN 100 (168)
Q Consensus 38 glLR~Ki~El~~EI~kL~~e~e~~~--~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~ 100 (168)
+-++....+|...+..|...+..+. =+......|......+..-++.+...|.+++..+++.-
T Consensus 19 ~~~~~~~~~i~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~A 83 (93)
T 4ioe_A 19 GNFKNAAGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIPILEGISTDLKRIA 83 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666667777777777776653 23445666666666777777777777777777666543
No 153
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=37.76 E-value=74 Score=19.86 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy14403 35 YYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLL 70 (168)
Q Consensus 35 Yy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~ 70 (168)
-|++-|-.|..++..=.+.|...+..++.++..+.+
T Consensus 3 aYl~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 378888888888888888888888888888776654
No 154
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=37.68 E-value=1.1e+02 Score=21.67 Aligned_cols=42 Identities=12% Similarity=0.238 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 105 IADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAE 146 (168)
Q Consensus 105 ~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~e 146 (168)
|+.|......|+...+.....++.+=...+..+....+.|.+
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~E 45 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDD 45 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 333444444444444443333333333333333333333333
No 155
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=37.45 E-value=57 Score=19.52 Aligned_cols=27 Identities=11% Similarity=0.213 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHH
Q psy14403 69 LLYDKRVKEMATELTELQGKLSDYNLT 95 (168)
Q Consensus 69 ~~yekrae~La~EI~~LQG~LADyNl~ 95 (168)
.++|-++++|..+-.+|+.+.+-.+-+
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 356777777777777777777665544
No 156
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=37.24 E-value=22 Score=25.75 Aligned_cols=16 Identities=50% Similarity=0.829 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14403 43 KIRDLTNEITRLKRQI 58 (168)
Q Consensus 43 Ki~El~~EI~kL~~e~ 58 (168)
+|++|+.||++|-+|.
T Consensus 53 ~IRdLNDEINkL~rEK 68 (92)
T 1x4t_A 53 RIRDLNDEINKLLREK 68 (92)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566677777776654
No 157
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=37.09 E-value=1.9e+02 Score=24.51 Aligned_cols=92 Identities=14% Similarity=0.155 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHH
Q psy14403 50 EITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQ 129 (168)
Q Consensus 50 EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~i 129 (168)
-+..+.++++..-.+.-.-...+.....|.+.|.++|.-|++.-.-...||. ....|.+.-+.+-.+-.
T Consensus 374 al~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-- 442 (471)
T 3mq9_A 374 ALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANH---------TVMALMASLDAEKAQGQ-- 442 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcch---------hHHHHHHHHHHHHHHHH--
Confidence 3445555555555444444445555555666666666666555444444443 22344444444443322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q psy14403 130 FTERSKKQHQLHELEAEIEKLDMI 153 (168)
Q Consensus 130 F~eR~~~E~~i~~lE~eie~~~~~ 153 (168)
..-+++|.+|..++.+|++...-
T Consensus 443 -~~~~~~~~~~~~~~~~~~~~~~~ 465 (471)
T 3mq9_A 443 -KKVEELEGEITTLNHKLQDASAE 465 (471)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777766543
No 158
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=36.96 E-value=60 Score=24.55 Aligned_cols=54 Identities=15% Similarity=0.280 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCC---HHHHHHHHHHHHHhcHHHHHHHHHH
Q psy14403 71 YDKRVKEMATELTELQGKLSDYNLTMDKVNTQTN---IADIEEEYLELRAANDIETRHLEEQ 129 (168)
Q Consensus 71 yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d---~~~i~~e~~~Lk~~N~~~~~~ld~i 129 (168)
+...+.+|..+|.+|+-++.+.=. +.|++ .+-|+..+..-++--++.+..+|..
T Consensus 66 L~~ki~eL~~kvA~le~e~~~~e~-----~~~~~~~~~e~le~~la~KkAEleKtqa~Ld~a 122 (125)
T 2pms_C 66 LSDKIDELDAEIAKLEDQLKAAEE-----NNNVEDYFKEGLEKTIAAKKAELEKTEADLKKA 122 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHh-----cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777777765321 22333 3445555555555555566666543
No 159
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=36.89 E-value=2.1e+02 Score=24.81 Aligned_cols=72 Identities=11% Similarity=0.173 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc---CCCHHHHHHHHHH
Q psy14403 38 GLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNT---QTNIADIEEEYLE 114 (168)
Q Consensus 38 glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t---~~d~~~i~~e~~~ 114 (168)
..+..+-..|..-++.+..++.....+ .....+....+|-.|=.+||++|.-+-+... |.+|.++.++...
T Consensus 67 ~~vl~~a~~La~~~n~~~~~L~~~~~~------~n~~i~~~V~~iN~l~~qIa~LN~qI~~~~~~~~g~~~ndLlDqRD~ 140 (463)
T 2d4y_A 67 QALIGKAEGLVNQFKTTDQYLRDQDKQ------VNIAIGSSVAQINNYAKQIANLNDQISRMTGVGAGASPNDLLDQRDQ 140 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHhHHHHHH
Confidence 346778888888888888888877654 3455777788888899999999998877753 5666666655544
Q ss_pred H
Q psy14403 115 L 115 (168)
Q Consensus 115 L 115 (168)
|
T Consensus 141 l 141 (463)
T 2d4y_A 141 L 141 (463)
T ss_dssp H
T ss_pred H
Confidence 4
No 160
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=36.44 E-value=1.3e+02 Score=26.21 Aligned_cols=49 Identities=24% Similarity=0.201 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14403 104 NIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDM 152 (168)
Q Consensus 104 d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~ 152 (168)
.-..++.+..+|+++.....+.+..+=.+....++++.+.|.+-.+++.
T Consensus 4 ~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n 52 (412)
T 3u06_A 4 MHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHN 52 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555554444444443
No 161
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=35.97 E-value=1.8e+02 Score=23.78 Aligned_cols=55 Identities=18% Similarity=0.300 Sum_probs=35.5
Q ss_pred hhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Q psy14403 33 KRYYEGLL---QLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQG 87 (168)
Q Consensus 33 ksYy~glL---R~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG 87 (168)
-.||.-+= |.-..+.-.|..+|+++++.++.+-+.+..--....+||..++.|-+
T Consensus 96 e~YWk~lAE~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~ 153 (209)
T 2wvr_A 96 SQYWKEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAE 153 (209)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56887654 33345556777777777777777777666666666666666555544
No 162
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=35.91 E-value=60 Score=20.71 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 35 YYEGLLQLKIRDLTNEITRLKRQIELS 61 (168)
Q Consensus 35 Yy~glLR~Ki~El~~EI~kL~~e~e~~ 61 (168)
=|+.-|-.++..|..|-..|..++..+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L 48 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKAL 48 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555554444
No 163
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=35.65 E-value=1.4e+02 Score=22.49 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14403 39 LLQLKIRDLTNEITRLKRQIELSAKEHA 66 (168)
Q Consensus 39 lLR~Ki~El~~EI~kL~~e~e~~~~e~s 66 (168)
-|..|+.++..++.+|.+.+..+..+.+
T Consensus 10 ~l~~KvAElekkv~~lek~lk~~~e~d~ 37 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKEIDESES 37 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTTCC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 4688999999999999998887766554
No 164
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=35.57 E-value=1.1e+02 Score=21.31 Aligned_cols=56 Identities=18% Similarity=0.298 Sum_probs=27.0
Q ss_pred hhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh
Q psy14403 33 KRYYEGLLQLK---IRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGK 88 (168)
Q Consensus 33 ksYy~glLR~K---i~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~ 88 (168)
..||.-+=-.. ..+.-.|-.+|+++++..+.+-+....=-+...+++.+++.|=.-
T Consensus 15 e~YWk~lAE~RR~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~laev 73 (79)
T 2zxx_A 15 SQYWKEVAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEV 73 (79)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56887554222 233344555555555544444433333333445555555555433
No 165
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=35.50 E-value=1.4e+02 Score=22.41 Aligned_cols=75 Identities=13% Similarity=0.065 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH--HHHhhcCCCHHHHHHHHHHHHHhcHHHHHHH
Q psy14403 49 NEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLT--MDKVNTQTNIADIEEEYLELRAANDIETRHL 126 (168)
Q Consensus 49 ~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~--~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~l 126 (168)
.||..|.+.-+ .=.+++...+++.++++.-..+|.....-||+. .++--|..++++|......+..--.+....|
T Consensus 45 eEI~~L~~~He---~F~~~L~~a~~e~~~i~~i~~el~~~~~~~~~~~~~~npYT~it~~~l~~~W~~l~~li~~Rd~~L 121 (129)
T 1wlx_A 45 EEIEGLISAHD---QFKSTLPDADREREAILAIHKEAQRIAESNHIKLSGSNPYTTVTPQIINSKWEKVQQLVPKRDHAL 121 (129)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666665544 446778889999999988888888888888862 2333466789999999988876554444433
No 166
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=35.29 E-value=92 Score=20.25 Aligned_cols=62 Identities=13% Similarity=0.103 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCC---CHHHHHHHHHHHHHhcHHHHHHHHHH
Q psy14403 68 FLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQT---NIADIEEEYLELRAANDIETRHLEEQ 129 (168)
Q Consensus 68 ~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~---d~~~i~~e~~~Lk~~N~~~~~~ld~i 129 (168)
+-.++.-+..+..-..++++.|.+.+..++.+...- .-......+..++..-.+....|+.|
T Consensus 11 ~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i 75 (93)
T 4ioe_A 11 PEELERIAGNFKNAAGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIPILEGI 75 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777788888888888888886533 34455555555554444444444433
No 167
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=35.00 E-value=88 Score=23.71 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHhHH
Q psy14403 64 EHATFLLYDKRVKEMATELTELQGKLS 90 (168)
Q Consensus 64 e~s~~~~yekrae~La~EI~~LQG~LA 90 (168)
+|+.|..=.++...+..-|+.|+..|.
T Consensus 44 ENaeY~aak~~q~~~e~rI~~L~~~L~ 70 (158)
T 2p4v_A 44 ENADYQYNKKRLREIDRRVRYLTKCME 70 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677787755555555555555555553
No 168
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=34.33 E-value=78 Score=29.43 Aligned_cols=17 Identities=18% Similarity=0.579 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhHhHHHH
Q psy14403 76 KEMATELTELQGKLSDY 92 (168)
Q Consensus 76 e~La~EI~~LQG~LADy 92 (168)
.++.+-|.+|..+|.||
T Consensus 60 rDltkrINELKnqLEdl 76 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHHTHH
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 34444445555555554
No 169
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=34.32 E-value=60 Score=19.39 Aligned_cols=15 Identities=13% Similarity=0.295 Sum_probs=6.5
Q ss_pred HHHHHHHHhcHHHHH
Q psy14403 110 EEYLELRAANDIETR 124 (168)
Q Consensus 110 ~e~~~Lk~~N~~~~~ 124 (168)
.++.+||.+|.....
T Consensus 14 qDIddlkrQN~~Le~ 28 (34)
T 1a93_B 14 QDIDDLKRQNALLEQ 28 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 344444444444433
No 170
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=34.19 E-value=1.3e+02 Score=21.62 Aligned_cols=59 Identities=14% Similarity=0.153 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc
Q psy14403 43 KIRDLTNEITRLKRQIELS--AKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNT 101 (168)
Q Consensus 43 Ki~El~~EI~kL~~e~e~~--~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t 101 (168)
+.+.+..|+-+|+.|.-.. +-+=+-+.-+.++.+.|..||..+.++|+--+..+|+.-+
T Consensus 24 ~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~k~~F~~~~~ 84 (93)
T 3sjb_C 24 KYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQAHLH 84 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544322 1123457888999999999999999999999988887654
No 171
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=33.48 E-value=1.7e+02 Score=22.81 Aligned_cols=16 Identities=19% Similarity=0.248 Sum_probs=7.8
Q ss_pred cCCCHHHHHHHHHHHH
Q psy14403 101 TQTNIADIEEEYLELR 116 (168)
Q Consensus 101 t~~d~~~i~~e~~~Lk 116 (168)
.+.|.+.|..-..++.
T Consensus 108 ~~~DeakI~aL~~Ei~ 123 (175)
T 3lay_A 108 SSPDTAKINAVAKEME 123 (175)
T ss_dssp SSCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 4455555554444443
No 172
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=33.21 E-value=91 Score=20.78 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=7.5
Q ss_pred HHHHHHHHhHhHHHHHHHHHHh
Q psy14403 78 MATELTELQGKLSDYNLTMDKV 99 (168)
Q Consensus 78 La~EI~~LQG~LADyNl~~Dk~ 99 (168)
......+|..-|.++..+|+..
T Consensus 58 W~~~~~~l~~~L~~i~~~l~~a 79 (96)
T 3h6p_C 58 WNQALEDLVRAYQSMSGTHESN 79 (96)
T ss_dssp HHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444433
No 173
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=32.95 E-value=1.5e+02 Score=22.06 Aligned_cols=47 Identities=21% Similarity=0.186 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q psy14403 44 IRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYN 93 (168)
Q Consensus 44 i~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyN 93 (168)
...++.|...|+.+.+.+..... -+....++|...+++|.+.-.++.
T Consensus 24 n~~l~~eN~~Lk~e~e~l~~~~~---~~~~~~~eL~~~~~~Le~~n~~L~ 70 (155)
T 2oto_A 24 NIRLRHENKDLKARLENAMEVAG---RDFKRAEELEKAKQALEDQRKDLE 70 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34677777777777776643222 223334444444555544444443
No 174
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=32.74 E-value=31 Score=25.40 Aligned_cols=23 Identities=30% Similarity=0.642 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSA 62 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~ 62 (168)
+..++..|..++..|+.++..+.
T Consensus 21 ~~~~l~~L~~~~~~L~~~l~~l~ 43 (168)
T 1buu_A 21 IEVKLANMEAEINTLKSKLELTN 43 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555555555544
No 175
>1rh1_A Colicin B; FEPA, cytotoxic bacterial protein, TONB, antibiotic; 2.50A {Escherichia coli} SCOP: b.110.1.1 f.1.1.1
Probab=32.49 E-value=3e+02 Score=25.28 Aligned_cols=51 Identities=25% Similarity=0.305 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhH--------hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHH
Q psy14403 71 YDKRVKEMATELTELQG--------KLSDYNLTMDKVNTQTNIADIEEEYLELRAANDI 121 (168)
Q Consensus 71 yekrae~La~EI~~LQG--------~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~ 121 (168)
|.+-+++||.+|+..|| .|+-||...+.++......|-.+-.+.|+.-|.+
T Consensus 344 yk~lAkeIA~~lkn~KGKkIRnvdDAL~sfeKyk~nlnkK~nakDR~AI~nALesvd~~ 402 (511)
T 1rh1_A 344 YKALSREIAENINNFQGKTIRSYDDAMSSINKLMANPSLKINATDKEAIVNAWKAFNAE 402 (511)
T ss_dssp HHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHhhccCceecCHHHHHHHHHHHHhchhhccccccHHHHHHHHHhcCHH
Confidence 44444555555444666 4888888888778888888888888888887764
No 176
>2yxy_A Hypothetical conserved protein, GK0453; alpha and beta proteins (A+B) class, structural GENO unknown function, NPPSFA; 2.20A {Geobacillus kaustophilus}
Probab=32.00 E-value=72 Score=23.85 Aligned_cols=32 Identities=16% Similarity=0.403 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHH
Q psy14403 44 IRDLTNEITRLKRQIELSAKE--HATFLLYDKRV 75 (168)
Q Consensus 44 i~El~~EI~kL~~e~e~~~~e--~s~~~~yekra 75 (168)
..||..||.+|+++..+.++. -+.|.-|++|+
T Consensus 16 ~~EL~~EI~~L~ekarKAEq~G~~nE~aV~erK~ 49 (115)
T 2yxy_A 16 KEELQQEIAMLTEKARKAEQMGMVNEYAVYERKI 49 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 368999999999999888875 36788888775
No 177
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=31.98 E-value=1.2e+02 Score=26.63 Aligned_cols=45 Identities=13% Similarity=0.233 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQG 87 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG 87 (168)
|+.+..++..+|..++.+++.... .+..-+...+.|-.+|.+|.|
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~~~~~---~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 15 LRQRTEELLRCNEQQAAELETCKE---QLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhCC
Confidence 445555555555555555444432 233444444555555555554
No 178
>2oie_A RS21-C6; helix, hydrolase; 2.20A {Mus musculus} SCOP: a.204.1.2 PDB: 2oig_A*
Probab=31.74 E-value=1.2e+02 Score=21.13 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=13.4
Q ss_pred HHhHhHHHHHHHHHHh--hcCCCHHHHH
Q psy14403 84 ELQGKLSDYNLTMDKV--NTQTNIADIE 109 (168)
Q Consensus 84 ~LQG~LADyNl~~Dk~--~t~~d~~~i~ 109 (168)
.+..+|+|.=..+=.+ ..|+|+++.-
T Consensus 76 ~l~eElgDvL~~l~~lA~~lgiDle~al 103 (111)
T 2oie_A 76 ALQEELSDVLIYLVALAARCHVDLPQAV 103 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 4566677755444333 2356665543
No 179
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=31.67 E-value=35 Score=26.17 Aligned_cols=109 Identities=15% Similarity=0.138 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHH-
Q psy14403 46 DLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETR- 124 (168)
Q Consensus 46 El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~- 124 (168)
....+|...+..+..++..+..|..+.+.......|+..|+..|++-...--.+- .....|..+..+|.+.-=..+.
T Consensus 12 ~~r~~l~~~~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE--~~~~~ie~ElE~LTasLFeEAN~ 89 (135)
T 2e7s_A 12 KSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAE--EEADKLNKEVEDLTASLFDEANN 89 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHH--HTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666777777777777777776666666666666666665443322222 2344555566665543222211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy14403 125 HLEEQFTERSKKQHQLHELEAEIEKLDMIDIS 156 (168)
Q Consensus 125 ~ld~iF~eR~~~E~~i~~lE~eie~~~~~~~~ 156 (168)
-|-..=.+|...|....+++.++.+-..+..|
T Consensus 90 MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~ 121 (135)
T 2e7s_A 90 LVADARMEKYAIEILNKRLTEQLREKDMLLDT 121 (135)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHTTTHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111234555667777777777665555444
No 180
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=30.86 E-value=98 Score=19.81 Aligned_cols=31 Identities=10% Similarity=0.137 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14403 123 TRHLEEQFTERSKKQHQLHELEAEIEKLDMI 153 (168)
Q Consensus 123 ~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~ 153 (168)
...++.+=.+...+..++..|..++..++..
T Consensus 28 e~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 28 EEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444555555555554443
No 181
>1sf9_A YFHH hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative, midwest center for structural genomics; 1.71A {Bacillus subtilis} SCOP: b.34.15.1
Probab=30.66 E-value=72 Score=24.28 Aligned_cols=30 Identities=13% Similarity=0.359 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh--hHHHHHHHHH
Q psy14403 46 DLTNEITRLKRQIELSAKEH--ATFLLYDKRV 75 (168)
Q Consensus 46 El~~EI~kL~~e~e~~~~e~--s~~~~yekra 75 (168)
||..||.+|+++..+.++.- +.|.-|++|+
T Consensus 36 EL~~EI~~L~EKaRKAEq~Gi~NE~aV~erKi 67 (128)
T 1sf9_A 36 ELNTEIALLSEKARKAEQHGIINELAVLERKI 67 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
No 182
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=30.25 E-value=1.5e+02 Score=24.20 Aligned_cols=48 Identities=23% Similarity=0.249 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHH
Q psy14403 43 KIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLS 90 (168)
Q Consensus 43 Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LA 90 (168)
-+..|..+|..|..++..+..++..+..+-..+..||.=|..|-|+=-
T Consensus 116 EN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~~~~ 163 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPL 163 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 345556666666666666666666666666666666666666665533
No 183
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=29.98 E-value=90 Score=18.52 Aligned_cols=17 Identities=29% Similarity=0.270 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14403 40 LQLKIRDLTNEITRLKR 56 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~ 56 (168)
|-.|+.|+..++.-|..
T Consensus 5 LEdKVEell~~~~~le~ 21 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTN 21 (33)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHH
Confidence 33344444333333333
No 184
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=29.83 E-value=1.2e+02 Score=19.96 Aligned_cols=63 Identities=10% Similarity=0.089 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc---CCCHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Q psy14403 70 LYDKRVKEMATELTELQGKLSDYNLTMDKVNT---QTNIADIEEEYLELRAANDIETRHLEEQFTE 132 (168)
Q Consensus 70 ~yekrae~La~EI~~LQG~LADyNl~~Dk~~t---~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~e 132 (168)
.++.-+..+.....++++.|.+.+..++.+.+ |..-......+..++..-.+....|+.|=..
T Consensus 12 ~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~ 77 (98)
T 3gwk_C 12 ELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQ 77 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555555555432 4555555556655555555555555554433
No 185
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=29.69 E-value=1.1e+02 Score=19.51 Aligned_cols=40 Identities=23% Similarity=0.251 Sum_probs=28.7
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy14403 110 EEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMIDIS 156 (168)
Q Consensus 110 ~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~~~ 156 (168)
....+||.-|++....+ ...|.++-++|.||+++.++-..
T Consensus 4 q~l~kLKe~n~~L~~kv-------~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 4 RQILRLKQINIQLATKI-------QHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHccHHHHHHHHHHHHHHH
Confidence 34566777776665554 55688889999999998887543
No 186
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=29.27 E-value=1.5e+02 Score=20.83 Aligned_cols=50 Identities=16% Similarity=0.276 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHhHhHHH
Q psy14403 42 LKIRDLTNEITR---LKRQIELSAKEH----ATFLLYDKRVKEMATELTELQGKLSD 91 (168)
Q Consensus 42 ~Ki~El~~EI~k---L~~e~e~~~~e~----s~~~~yekrae~La~EI~~LQG~LAD 91 (168)
.-.+.|.+||-. +++|+....-.+ +.+.-++++.++|..|+..|+.++-+
T Consensus 14 eLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666643 233332222222 23445677888888888888888877
No 187
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=29.23 E-value=1.1e+02 Score=19.40 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14403 122 ETRHLEEQFTERSKKQHQLHELEAEIEKLDMI 153 (168)
Q Consensus 122 ~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~ 153 (168)
....++.+=.+...+..++..|..|+..++..
T Consensus 27 Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 27 LEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555555555555443
No 188
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=29.02 E-value=1.2e+02 Score=19.56 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14403 127 EEQFTERSKKQHQLHELEAEIEKLDM 152 (168)
Q Consensus 127 d~iF~eR~~~E~~i~~lE~eie~~~~ 152 (168)
+.+-.+...+..++..|..++..+..
T Consensus 33 ~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 33 DQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444443
No 189
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=28.69 E-value=1.1e+02 Score=21.75 Aligned_cols=19 Identities=21% Similarity=0.365 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14403 44 IRDLTNEITRLKRQIELSA 62 (168)
Q Consensus 44 i~El~~EI~kL~~e~e~~~ 62 (168)
+..|..|++.|..|.....
T Consensus 57 ~~~L~~e~~~L~~e~~~~~ 75 (90)
T 2wt7_B 57 KTQLIQQVEQLKQEVSRLA 75 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444443333333
No 190
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=28.48 E-value=1.1e+02 Score=25.67 Aligned_cols=17 Identities=24% Similarity=0.192 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14403 45 RDLTNEITRLKRQIELS 61 (168)
Q Consensus 45 ~El~~EI~kL~~e~e~~ 61 (168)
..|..++..|.+|++.+
T Consensus 188 e~L~~~~~~L~eEi~~L 204 (315)
T 2ve7_A 188 ESLEAKNRALNEQIARL 204 (315)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444444
No 191
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=28.38 E-value=3.5e+02 Score=24.81 Aligned_cols=49 Identities=14% Similarity=0.201 Sum_probs=15.9
Q ss_pred CCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy14403 103 TNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMIDI 155 (168)
Q Consensus 103 ~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~~~ 155 (168)
.+.+++...+.+|+..-.... .-+.++......+..+...++..+....
T Consensus 601 ~~~~~~~~~~~~l~~~~~~i~----~r~~e~~~rp~~~~~~~~~~~~~~~~~~ 649 (675)
T 3d2f_A 601 SIKAKYIAKYEELASLGNIIR----GRYLAKEEEKKQAIRSKQEASQMAAMAE 649 (675)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHC-------------
T ss_pred hhHHHHHHHHHHHHHHHHHHH----HHHHHhhcChHHHHHHHHHHHHHHHHHH
Confidence 345555555555543322222 1234444444555556665555554443
No 192
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=28.37 E-value=1.2e+02 Score=19.58 Aligned_cols=30 Identities=3% Similarity=0.299 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q psy14403 69 LLYDKRVKEMATELTELQGKLSDYNLTMDK 98 (168)
Q Consensus 69 ~~yekrae~La~EI~~LQG~LADyNl~~Dk 98 (168)
..|.........-...+..-|.++...+..
T Consensus 49 ~af~~~~~~~~~~~~~~~~~L~~i~~~L~~ 78 (97)
T 2vs0_A 49 SRFEEQFQQLSPKVEKFAQLLEEIKQQLNS 78 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 193
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=28.21 E-value=1.2e+02 Score=19.57 Aligned_cols=14 Identities=29% Similarity=0.480 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHhH
Q psy14403 74 RVKEMATELTELQG 87 (168)
Q Consensus 74 rae~La~EI~~LQG 87 (168)
++..|..|+.-|.+
T Consensus 45 ~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 45 RADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 194
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=27.92 E-value=2.5e+02 Score=24.41 Aligned_cols=70 Identities=27% Similarity=0.299 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 66 ATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEA 145 (168)
Q Consensus 66 s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~ 145 (168)
..+..+..+..++..++..|+.+- |.+-..+.. ...+ ++.+|+++-.. +=.+-+..|.++.++++
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~---n~~sk~i~~-~~~~----~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~ 92 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTER---NQVAKRVPK-APPE----EKEALIARGKA-------LGEEAKRLEEALREKEA 92 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHSSS-SCHH----HHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHh-hccc----cHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 445555566666666666666544 333332222 1111 22333333222 22233456666777777
Q ss_pred HHHHH
Q psy14403 146 EIEKL 150 (168)
Q Consensus 146 eie~~ 150 (168)
++...
T Consensus 93 ~~~~~ 97 (421)
T 1ses_A 93 RLEAL 97 (421)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 195
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=27.36 E-value=1.3e+02 Score=19.35 Aligned_cols=19 Identities=0% Similarity=0.038 Sum_probs=9.0
Q ss_pred HHHHHHHHhcHHHHHHHHH
Q psy14403 110 EEYLELRAANDIETRHLEE 128 (168)
Q Consensus 110 ~e~~~Lk~~N~~~~~~ld~ 128 (168)
.+....++...|.-+.||+
T Consensus 32 ~~v~~ak~eA~RAN~RlDN 50 (52)
T 1jcd_A 32 SDAQAAKDDAARANQRADN 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 3444444444455555554
No 196
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=27.29 E-value=69 Score=22.95 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 38 GLLQLKIRDLTNEITRLKRQIELSAK 63 (168)
Q Consensus 38 glLR~Ki~El~~EI~kL~~e~e~~~~ 63 (168)
-.|+...+++..|+.+++++++.+..
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45778888888888888888877653
No 197
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=27.02 E-value=1.1e+02 Score=20.62 Aligned_cols=18 Identities=22% Similarity=0.051 Sum_probs=8.4
Q ss_pred HHHHHHHHHhcHHHHHHH
Q psy14403 109 EEEYLELRAANDIETRHL 126 (168)
Q Consensus 109 ~~e~~~Lk~~N~~~~~~l 126 (168)
..+...|+.++.....++
T Consensus 49 ~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 49 TLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555555444444
No 198
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=26.44 E-value=61 Score=20.35 Aligned_cols=21 Identities=43% Similarity=0.464 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q psy14403 36 YEGLLQLKIRDLTNEITRLKR 56 (168)
Q Consensus 36 y~glLR~Ki~El~~EI~kL~~ 56 (168)
|+.-|..++..|...+..|..
T Consensus 45 ~~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 45 YLQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666665554
No 199
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=26.39 E-value=1.9e+02 Score=21.15 Aligned_cols=42 Identities=14% Similarity=0.094 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy14403 36 YEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKE 77 (168)
Q Consensus 36 y~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~ 77 (168)
...+|+.++.+|..+|..|+.-.+.+..--+.|.......+.
T Consensus 82 ~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~ 123 (142)
T 3gp4_A 82 RAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQE 123 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 200
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=25.68 E-value=60 Score=21.74 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q psy14403 34 RYYEGLLQLKIRDLTNEITRLKRQ 57 (168)
Q Consensus 34 sYy~glLR~Ki~El~~EI~kL~~e 57 (168)
-=|+.-|+..+.++..|+..|+.+
T Consensus 56 i~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 56 TEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445666666666666555555543
No 201
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=25.26 E-value=1.5e+02 Score=24.81 Aligned_cols=17 Identities=6% Similarity=0.085 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy14403 48 TNEITRLKRQIELSAKE 64 (168)
Q Consensus 48 ~~EI~kL~~e~e~~~~e 64 (168)
.+||+.|..+++.++.+
T Consensus 184 ~~eie~L~~~~~~L~eE 200 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQ 200 (315)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555544
No 202
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=25.16 E-value=2e+02 Score=27.35 Aligned_cols=45 Identities=13% Similarity=0.103 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy14403 39 LLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELT 83 (168)
Q Consensus 39 lLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~ 83 (168)
-+-++|++|..|=..|.++++......+.......+.+.+|++|-
T Consensus 14 ~i~~~i~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 58 (706)
T 3fhn_A 14 NINDRIKQVQNERNELASKLQNLKQSLASNDTEVALSEVIAQDII 58 (706)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence 456788888888888888877777666555555555555555553
No 203
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=25.08 E-value=1.9e+02 Score=23.70 Aligned_cols=39 Identities=23% Similarity=0.131 Sum_probs=26.3
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHh
Q psy14403 113 LELRAANDIETRHLEEQFTERSKKQHQLHELEAE---IEKLD 151 (168)
Q Consensus 113 ~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~e---ie~~~ 151 (168)
.++...-+.....+..+-..+.+.++++.+++.. ++.+.
T Consensus 95 ~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~ 136 (357)
T 3rrk_A 95 EEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLA 136 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 3344445566667777777777778888888777 66554
No 204
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=25.03 E-value=1.6e+02 Score=20.20 Aligned_cols=16 Identities=31% Similarity=0.563 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHhH
Q psy14403 72 DKRVKEMATELTELQG 87 (168)
Q Consensus 72 ekrae~La~EI~~LQG 87 (168)
.++...|..+|..|+|
T Consensus 72 ~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 72 RKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhhc
Confidence 3444445555555543
No 205
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=25.02 E-value=1.8e+02 Score=21.89 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHhHHHH
Q psy14403 64 EHATFLLYDKRVKEMATELTELQGKLSDY 92 (168)
Q Consensus 64 e~s~~~~yekrae~La~EI~~LQG~LADy 92 (168)
+|+.|..-.++-..+..-|+.|+..|..+
T Consensus 44 ENaeY~aak~~q~~~e~ri~~Le~~L~~a 72 (158)
T 1grj_A 44 ENAEYHAAREQQGFCEGRIKDIEAKLSNA 72 (158)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHhhC
Confidence 56777766555555556666666666544
No 206
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=24.95 E-value=1.8e+02 Score=20.43 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSA 62 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~ 62 (168)
|++++.+|..++..|.+++..+.
T Consensus 6 L~~~i~~L~~q~~~L~~ei~~~~ 28 (85)
T 3viq_B 6 LESRVHLLEQQKEQLESSLQDAL 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666555543
No 207
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=24.43 E-value=2.1e+02 Score=21.85 Aligned_cols=53 Identities=21% Similarity=0.554 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHH----HHHH---------------HHHHHHHHHHHHhHhHHHH
Q psy14403 40 LQLKIRDLTNEITRLKRQIELSAKEHATFL----LYDK---------------RVKEMATELTELQGKLSDY 92 (168)
Q Consensus 40 LR~Ki~El~~EI~kL~~e~e~~~~e~s~~~----~yek---------------rae~La~EI~~LQG~LADy 92 (168)
|.+.+..++.....|..++..+.++...|. -|.+ |.+-|-.-+..+...++||
T Consensus 64 Lhaev~~v~~~F~~Ld~~L~~l~~~s~e~~~i~~EY~r~k~~K~dp~y~ekK~Rc~yL~~KLsHIK~lI~~Y 135 (140)
T 1xaw_A 64 LQSVLDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGSADYKSKKNHCKQLKSKLSHIKKMVGDY 135 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhh
No 208
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=24.21 E-value=1.2e+02 Score=20.44 Aligned_cols=31 Identities=23% Similarity=0.223 Sum_probs=20.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 31 QDKRYYEGLLQLKIRDLTNEITRLKRQIELS 61 (168)
Q Consensus 31 ~DksYy~glLR~Ki~El~~EI~kL~~e~e~~ 61 (168)
.+.-=|+--|+..+..|..|...|+..+...
T Consensus 46 ~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 46 RKAIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444577777777777777777777666543
No 209
>3g9r_A Fusion complex of HIV-1 envelope glycoprotein and saccharomyces cerevisiae general...; GP41, MPER, membrane fusion, AIDS; 2.00A {Human immunodeficiency virus 1}
Probab=24.18 E-value=61 Score=20.09 Aligned_cols=18 Identities=44% Similarity=0.636 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14403 38 GLLQLKIRDLTNEITRLK 55 (168)
Q Consensus 38 glLR~Ki~El~~EI~kL~ 55 (168)
.++-+||.-|.+||.|++
T Consensus 24 ~iMv~~~~~~~~~~~~~~ 41 (42)
T 3g9r_A 24 EELKSKIKRIENEIKRIK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 356678888888887765
No 210
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=23.97 E-value=64 Score=26.45 Aligned_cols=14 Identities=14% Similarity=0.290 Sum_probs=7.8
Q ss_pred hhhhhhhhhhhhhc
Q psy14403 151 DMIDISMWIDISTI 164 (168)
Q Consensus 151 ~~~~~~~~~~~~~~ 164 (168)
.+...+.|-.||-|
T Consensus 189 ~k~~~qly~~vt~i 202 (250)
T 2ve7_C 189 AVYVAQLYHQVSKI 202 (250)
T ss_dssp THHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhhc
Confidence 34455666666655
No 211
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=23.93 E-value=1.6e+02 Score=19.51 Aligned_cols=38 Identities=11% Similarity=-0.008 Sum_probs=30.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhc
Q psy14403 64 EHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNT 101 (168)
Q Consensus 64 e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t 101 (168)
+-......-++++.+..||..-+..+...|....++-.
T Consensus 34 d~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~ 71 (118)
T 3uul_A 34 DVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMT 71 (118)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666678999999999999999999998888843
No 212
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=23.78 E-value=2.7e+02 Score=21.92 Aligned_cols=7 Identities=29% Similarity=0.705 Sum_probs=4.4
Q ss_pred CCCCCCC
Q psy14403 13 LSGLRTG 19 (168)
Q Consensus 13 l~G~rt~ 19 (168)
|.|++++
T Consensus 71 l~gipp~ 77 (219)
T 4e81_A 71 LDGINPA 77 (219)
T ss_dssp EECCCCC
T ss_pred EeCCCCC
Confidence 5677653
No 213
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=23.67 E-value=1.5e+02 Score=19.32 Aligned_cols=18 Identities=11% Similarity=0.244 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHhHhHH
Q psy14403 73 KRVKEMATELTELQGKLS 90 (168)
Q Consensus 73 krae~La~EI~~LQG~LA 90 (168)
.....|..||..|..+|+
T Consensus 44 ~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 44 SKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344456666666666554
No 214
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=23.05 E-value=1.2e+02 Score=18.81 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhHhHHHHHHH
Q psy14403 74 RVKEMATELTELQGKLSDYNLT 95 (168)
Q Consensus 74 rae~La~EI~~LQG~LADyNl~ 95 (168)
|.++|.+=|..|+++|.+.+-.
T Consensus 17 r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 17 RSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555444433
No 215
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=22.86 E-value=2.7e+02 Score=21.64 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhHhHHH
Q psy14403 73 KRVKEMATELTELQGKLSD 91 (168)
Q Consensus 73 krae~La~EI~~LQG~LAD 91 (168)
.++++|++||.+|+++|.+
T Consensus 113 akI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666654
No 216
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=22.85 E-value=1.8e+02 Score=19.50 Aligned_cols=23 Identities=4% Similarity=0.110 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHH
Q psy14403 72 DKRVKEMATELTELQGKLSDYNL 94 (168)
Q Consensus 72 ekrae~La~EI~~LQG~LADyNl 94 (168)
.++...|-.|....+.++...+.
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~ 27 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEA 27 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 217
>1z0p_A Hypothetical protein SPY1572; structural genomics, PSI, protein ST initiative, midwest center for structural genomics, MCSG, U function; 1.70A {Streptococcus pyogenes} SCOP: a.2.18.1
Probab=22.82 E-value=2e+02 Score=20.15 Aligned_cols=48 Identities=17% Similarity=0.385 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q psy14403 42 LKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYN 93 (168)
Q Consensus 42 ~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyN 93 (168)
-.||++-.+.++---+.+.-++....+..||.|.++- +=|||+.+.|.
T Consensus 19 i~ine~Am~~s~kv~eED~derAkdA~IRYESkLDAY----qFl~gKF~Ny~ 66 (84)
T 1z0p_A 19 IQVNQLAMATSQEVAQEDGDERAKDAFIRYESKLDAY----EFLLGKFDNYK 66 (84)
T ss_dssp HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhHH----HHHHHHHhhhh
Confidence 4678888888887778888899999999999998874 56899999886
No 218
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=22.64 E-value=92 Score=21.02 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHhHhHHH
Q psy14403 73 KRVKEMATELTELQGKLSD 91 (168)
Q Consensus 73 krae~La~EI~~LQG~LAD 91 (168)
.....|..+|..|+.+|.-
T Consensus 50 ~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 50 LENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555543
No 219
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=22.64 E-value=1.9e+02 Score=25.40 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHH
Q psy14403 72 DKRVKEMATELTELQGKLSDYNLTMDK 98 (168)
Q Consensus 72 ekrae~La~EI~~LQG~LADyNl~~Dk 98 (168)
.+++..+.+|.+.|+..+..|+.+...
T Consensus 42 ~~~~~~~~ke~~~l~~~v~~~~~~~~~ 68 (371)
T 1zbt_A 42 TKRFMELSREEANSRETVAVYREYKQV 68 (371)
T ss_dssp --------CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666777666666666554443
No 220
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=22.54 E-value=2.8e+02 Score=22.76 Aligned_cols=33 Identities=9% Similarity=0.136 Sum_probs=23.4
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14403 32 DKRYYEGLLQLKIRDLTNEITRLKRQIELSAKE 64 (168)
Q Consensus 32 DksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e 64 (168)
-.+--+..|..++.++..+|..+.+++..+...
T Consensus 223 ~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 223 PLGKAAARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777777777777776665
No 221
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=22.34 E-value=71 Score=23.65 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 122 ETRHLEEQFTERSKKQHQLHELEAEIE 148 (168)
Q Consensus 122 ~~~~ld~iF~eR~~~E~~i~~lE~eie 148 (168)
....++.++.+.++.+.++.++..++-
T Consensus 30 l~~~v~~l~~e~k~l~ke~~~l~~~~a 56 (171)
T 2zvf_A 30 LPKTVERFFEEWKDQRKEIERLKSVIA 56 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555554443
No 222
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=22.24 E-value=73 Score=20.25 Aligned_cols=16 Identities=6% Similarity=0.177 Sum_probs=9.4
Q ss_pred HHhcHHHHHHHHHHHH
Q psy14403 116 RAANDIETRHLEEQFT 131 (168)
Q Consensus 116 k~~N~~~~~~ld~iF~ 131 (168)
+.++....+.+|..|.
T Consensus 32 Kek~~~i~~eLD~tl~ 47 (52)
T 2z5i_A 32 KLKYKAISEELDHALN 47 (52)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555566666666553
No 223
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=22.04 E-value=1.9e+02 Score=19.57 Aligned_cols=36 Identities=6% Similarity=-0.046 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcC
Q psy14403 67 TFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQ 102 (168)
Q Consensus 67 ~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~ 102 (168)
.|..++.-+..+..-...|++.|.+....++.+.+.
T Consensus 12 ~~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~ 47 (103)
T 4i0x_B 12 DLDHIEQVTSRARGFKEFVTENLDQLESRAQKLVQS 47 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 566777788888888888888888888888888765
No 224
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=22.01 E-value=2.8e+02 Score=23.92 Aligned_cols=11 Identities=27% Similarity=0.477 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q psy14403 140 LHELEAEIEKL 150 (168)
Q Consensus 140 i~~lE~eie~~ 150 (168)
-+++-++++++
T Consensus 47 rr~l~n~~~el 57 (403)
T 4etp_A 47 RRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 33444444444
No 225
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=21.99 E-value=3.1e+02 Score=21.94 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14403 41 QLKIRDLTNEITRLKRQ 57 (168)
Q Consensus 41 R~Ki~El~~EI~kL~~e 57 (168)
+..+..+..++..++.+
T Consensus 68 ~~~~~~~~a~l~~~~a~ 84 (341)
T 3fpp_A 68 ENQIKEVEATLMELRAQ 84 (341)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 226
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=21.96 E-value=1.9e+02 Score=19.45 Aligned_cols=45 Identities=9% Similarity=0.102 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy14403 37 EGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATE 81 (168)
Q Consensus 37 ~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~E 81 (168)
+--+..|+..+..|...+...++..++++.-|-.==+..+.+.++
T Consensus 4 m~aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~ 48 (75)
T 3mtu_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQE 48 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 556788999999999999999999999999887666666666665
No 227
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.91 E-value=1.2e+02 Score=26.74 Aligned_cols=48 Identities=10% Similarity=0.099 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14403 106 ADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMI 153 (168)
Q Consensus 106 ~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~eie~~~~~ 153 (168)
+++......|.......+.++..+..+.....++++...+++...+.+
T Consensus 28 ~~l~~r~~~le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~~~~ 75 (434)
T 4b4t_M 28 QELQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQL 75 (434)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 444444444555555556666777777777788888887777776654
No 228
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=21.80 E-value=1.1e+02 Score=21.39 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy14403 43 KIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELT 83 (168)
Q Consensus 43 Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~ 83 (168)
++.+|+++|..|+..++.+++++.-|-.==+..+-|-++..
T Consensus 2 ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQ~~e 42 (82)
T 3tq7_B 2 QILELNQQLVDLKLTVDGLEKERDFYFSKLRDIELICQEHE 42 (82)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46788999999999999999999988777777777777653
No 229
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=21.67 E-value=2e+02 Score=22.32 Aligned_cols=35 Identities=14% Similarity=0.297 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhh
Q psy14403 66 ATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVN 100 (168)
Q Consensus 66 s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~ 100 (168)
.....++++.+.|..+|++|+..++.....++.+.
T Consensus 79 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~ 113 (278)
T 1r8e_A 79 ELFAFYTEQERQIREKLDFLSALEQTISLVKKRMK 113 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888888888888877777666543
No 230
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=21.63 E-value=2.2e+02 Score=20.06 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14403 45 RDLTNEITRLKRQIELSA 62 (168)
Q Consensus 45 ~El~~EI~kL~~e~e~~~ 62 (168)
+.|.++|..|+.++..++
T Consensus 4 ~~L~~~i~~L~~q~~~L~ 21 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLE 21 (85)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555444433
No 231
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=21.51 E-value=2.9e+02 Score=22.79 Aligned_cols=45 Identities=11% Similarity=0.059 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 102 QTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAE 146 (168)
Q Consensus 102 ~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE~e 146 (168)
|..++++++-.++|..+.+...+.....=..=+..|+++++|+.-
T Consensus 5 nsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~ 49 (233)
T 2yko_A 5 RSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDY 49 (233)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556778888888887777666544433222223334444444443
No 232
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=21.07 E-value=50 Score=26.96 Aligned_cols=33 Identities=24% Similarity=0.304 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Q psy14403 48 TNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQG 87 (168)
Q Consensus 48 ~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG 87 (168)
..|..+|++|+..+..... +++.|..|.+.|+.
T Consensus 25 ~~eN~~Lk~e~~~l~~~~~-------~~~~l~~En~rLr~ 57 (255)
T 2j5u_A 25 YTENQHLKERLEELAQLES-------EVADLKKENKDLKE 57 (255)
T ss_dssp -CTTTTHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 3444444444444444443 44444444444444
No 233
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=20.70 E-value=2.7e+02 Score=20.82 Aligned_cols=51 Identities=18% Similarity=0.185 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHHHHHHH-HhHhHHHHHHHHHHhhcCC--CHHHHHHHHHHH
Q psy14403 65 HATFLLYDKRVKEMATELTE-LQGKLSDYNLTMDKVNTQT--NIADIEEEYLEL 115 (168)
Q Consensus 65 ~s~~~~yekrae~La~EI~~-LQG~LADyNl~~Dk~~t~~--d~~~i~~e~~~L 115 (168)
-.......++++++..|+.. -++.+...|.+.+++.... +...|......|
T Consensus 33 l~~v~~l~~k~~~f~~el~~~~~~~v~~v~~~~~~L~~~~~~~~~~i~~~~~~l 86 (218)
T 3edu_A 33 FDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGL 86 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34566788899999999998 5899999999999886543 333344433333
No 234
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=20.70 E-value=2.3e+02 Score=24.63 Aligned_cols=79 Identities=15% Similarity=0.086 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhHhHHHHH------HHHHHhhcCCCHHHHHHHHHHHHHhcHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q psy14403 74 RVKEMATELTELQGKLSDYN------LTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQ--FTERSKKQHQLHELEA 145 (168)
Q Consensus 74 rae~La~EI~~LQG~LADyN------l~~Dk~~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~i--F~eR~~~E~~i~~lE~ 145 (168)
+.+.+..++.+|+.+|+|=+ .+...+..-...+.+...+.+++...+......+-+ =.-+...++++..++.
T Consensus 4 ~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~D~e~~~~a~~e~~~l~~ 83 (354)
T 3d5a_X 4 KLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLDDPELKEMAKAEREALLA 83 (354)
T ss_dssp HHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 44555555555555555432 222222222333444444444444333322222111 0123444556666666
Q ss_pred HHHHHhh
Q psy14403 146 EIEKLDM 152 (168)
Q Consensus 146 eie~~~~ 152 (168)
+++++..
T Consensus 84 ~~~~le~ 90 (354)
T 3d5a_X 84 RKEALEK 90 (354)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 235
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=20.68 E-value=2.5e+02 Score=20.51 Aligned_cols=81 Identities=20% Similarity=0.208 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcHH
Q psy14403 42 LKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDI 121 (168)
Q Consensus 42 ~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~~t~~d~~~i~~e~~~Lk~~N~~ 121 (168)
.++++|..-.++|.-|.+.... .|+.-..+.-..+..||.+|.-.-..- +.+.....+|...||.
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~------K~~~~~~e~~~~~~~Lq~El~~lr~~~---------~~l~~~iReLEq~NDD 67 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKE------KLEHQYAQSYKQVSVLEDDLSQTRAIK---------EQLHKYVRELEQANDD 67 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhchH
Confidence 3678888888888888887653 344444555566777887776644333 3455566777777776
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14403 122 ETRHLEEQFTERSKKQ 137 (168)
Q Consensus 122 ~~~~ld~iF~eR~~~E 137 (168)
....-=....-=.+.|
T Consensus 68 LER~~R~t~~SLeD~E 83 (111)
T 2v66_B 68 LERAKRATIVSLEDFE 83 (111)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHH
Confidence 5554433333333333
No 236
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.59 E-value=1.4e+02 Score=26.14 Aligned_cols=48 Identities=23% Similarity=0.338 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Q psy14403 33 KRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQG 87 (168)
Q Consensus 33 ksYy~glLR~Ki~El~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~LQG 87 (168)
+.||.. ||.++...+..+...+..++.+.. .+.++...+..|+..||.
T Consensus 20 ~~~~~~----~i~~~~~~~~~~~~~~~~l~~~~~---~l~~~~~~~~~e~~~l~~ 67 (405)
T 4b4t_J 20 KPYFEQ----KIQETELKIRSKTENVRRLEAQRN---ALNDKVRFIKDELRLLQE 67 (405)
T ss_dssp ----CH----HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCCC
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcC
No 237
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=20.44 E-value=1.5e+02 Score=21.47 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy14403 47 LTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTE 84 (168)
Q Consensus 47 l~~EI~kL~~e~e~~~~e~s~~~~yekrae~La~EI~~ 84 (168)
|.+||..|+.+++....=......++.+.+.+...++.
T Consensus 4 l~~~~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~ 41 (182)
T 3kqg_A 4 LNAQIPELKSDLEKASALNTKIRALQGSLENMSKLLKR 41 (182)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555544445555555555555444443
No 238
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=20.36 E-value=2.4e+02 Score=20.02 Aligned_cols=56 Identities=14% Similarity=0.246 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHhHhHHHHH
Q psy14403 38 GLLQLKIRDLTNEITRLKRQIELSAKEHA--TFLLYDKRVKEMATELTELQGKLSDYN 93 (168)
Q Consensus 38 glLR~Ki~El~~EI~kL~~e~e~~~~e~s--~~~~yekrae~La~EI~~LQG~LADyN 93 (168)
..||.-|.+-+.=|+.|..|+.....+.. .-..-++-.+.....+.+|++++|-|-
T Consensus 25 ~~lrq~I~DKQ~~i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~r~~av~g 82 (90)
T 4b6x_A 25 AALRQEIEDKQLMVNNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQRRFAVLR 82 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777777777777665544322 223334445556667788888887663
No 239
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=20.33 E-value=2.1e+02 Score=19.47 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q psy14403 109 EEEYLELRAANDIETRHLEEQFTERSKKQHQL 140 (168)
Q Consensus 109 ~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i 140 (168)
+.+...++..-++...+-..+..-+-..|-+|
T Consensus 41 E~el~~~r~e~~~ql~EYq~LlnvK~~Le~EI 72 (86)
T 1x8y_A 41 EREMAEMRARMQQQLDEYQELLDIKLALDMEI 72 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 44444444444444444444444444444433
No 240
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=20.21 E-value=62 Score=18.61 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=11.9
Q ss_pred cccccCCCCCCCCCCCCCC
Q psy14403 7 LVTQQGLSGLRTGSALRGP 25 (168)
Q Consensus 7 PvTQqGl~G~rt~~~~~Gp 25 (168)
|--|-|++|...++++-||
T Consensus 8 prgqpgvmgfpgppgppgp 26 (31)
T 4gyx_A 8 PRGQPGVMGFPGPPGPPGP 26 (31)
T ss_dssp CCCCCCCCCCCCCCCCCCC
T ss_pred CCCCCccccCCCCCCCCCC
Confidence 4567778887765544454
No 241
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=20.12 E-value=4.5e+02 Score=23.10 Aligned_cols=72 Identities=13% Similarity=0.189 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHh-hcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14403 66 ATFLLYDKRVKEMATELTELQGKLSDYNLTMDKV-NTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELE 144 (168)
Q Consensus 66 s~~~~yekrae~La~EI~~LQG~LADyNl~~Dk~-~t~~d~~~i~~e~~~Lk~~N~~~~~~ld~iF~eR~~~E~~i~~lE 144 (168)
..+..+..+..++..++..|+.+--.....+-++ ..+-+.+++.++...|+.+ -+..|.++.++|
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~--------------~~~~~~~~~~~~ 96 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKR--------------IGELENEVEELK 96 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHH--------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHH--------------HHHHHHHHHHHH
Confidence 3444555555556666666665554444444432 2344555555555444433 235666667777
Q ss_pred HHHHHHh
Q psy14403 145 AEIEKLD 151 (168)
Q Consensus 145 ~eie~~~ 151 (168)
+++....
T Consensus 97 ~~~~~~~ 103 (455)
T 2dq0_A 97 KKIDYYL 103 (455)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776543
Done!