RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14403
(168 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 2e-04
Identities = 17/118 (14%), Positives = 40/118 (33%), Gaps = 21/118 (17%)
Query: 28 RQVQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQG 87
+ + K + ++ K + ++ R T L + + + E L+
Sbjct: 43 KSILSKEEIDHIIMSK-----DAVSGTLRLFW-------TLLSKQEEMVQKFVE-EVLR- 88
Query: 88 KLSDYNLTMDKVNTQTNI-ADIEEEYLELRAA--NDIETRHLEEQFTERSKKQHQLHE 142
+Y M + T+ + + Y+E R ND + + R + +L +
Sbjct: 89 --INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV--FAKYNVSRLQPYLKLRQ 142
Score = 29.1 bits (64), Expect = 0.94
Identities = 19/189 (10%), Positives = 57/189 (30%), Gaps = 32/189 (16%)
Query: 2 SDSDRLVTQQGLSGLRTGSALRGPGFRQVQDKRYYEGLLQLKIRDLTNEITRLKRQI--- 58
D + ++ L S + +Q ++ + L+++ L R I
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLV----EKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 59 ----------ELSAKEH----ATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTN 104
+L + + + + E +T + D+ K+ +
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 105 IADIEEEYLELRAANDIET--RHLEEQFTERSKK----QHQLHELEAEI---EKLDMIDI 155
+ L ++ ++ + + + L ++E + + D++ I
Sbjct: 513 AWNASGSILNT--LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570
Query: 156 SMWIDISTI 164
++ + I
Sbjct: 571 ALMAEDEAI 579
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 39.0 bits (91), Expect = 4e-04
Identities = 22/109 (20%), Positives = 50/109 (45%), Gaps = 7/109 (6%)
Query: 43 KIRDLTNEITRLKRQI-ELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNT 101
K ++LT + + I EL + +K +E+ +L+G+ SD + + +
Sbjct: 1026 KAKNLTKLKNKHESMISELEVRLKKE----EKSRQELEKIKRKLEGESSDLHEQIAE--L 1079
Query: 102 QTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKL 150
Q IA+++ + + LE++ ++++ ++ ELE+ I L
Sbjct: 1080 QAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDL 1128
Score = 37.9 bits (88), Expect = 8e-04
Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 12/109 (11%)
Query: 40 LQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKV 99
L+ ++ E+ ++E + L K+++E+ + +++LQ L +K
Sbjct: 1086 LKAQLAKKEEELQAALARLEDETSQKNNAL---KKIRELESHISDLQEDLESEKAARNKA 1142
Query: 100 NTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIE 148
Q D+ EE L+ LE+ + +Q + +
Sbjct: 1143 EKQ--KRDLSEELEALK-------TELEDTLDTTATQQELRGSDYKDDD 1182
Score = 34.0 bits (78), Expect = 0.017
Identities = 15/111 (13%), Positives = 40/111 (36%), Gaps = 5/111 (4%)
Query: 40 LQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKV 99
LQ + + + ++ L+ Q+E ++ +++ + +K+
Sbjct: 946 LQAEKKKMQQQMLDLEEQLEEEEAARQKL---QLEKVTADGKIKKMEDDILIMEDQNNKL 1002
Query: 100 NTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKL 150
+ +EE +L E + ++K + + ELE ++K
Sbjct: 1003 TKE--RKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKE 1051
Score = 34.0 bits (78), Expect = 0.018
Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 12/111 (10%)
Query: 40 LQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKV 99
L+ R L E + L QI + A ++ + EL +L D
Sbjct: 1058 LEKIKRKLEGESSDLHEQIAELQAQIAE---LKAQLAKKEEELQAALARLEDE------- 1107
Query: 100 NTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKL 150
+ + ++ EL + LE + R+K + Q +L E+E L
Sbjct: 1108 --TSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEAL 1156
Score = 32.5 bits (74), Expect = 0.063
Identities = 16/136 (11%), Positives = 47/136 (34%), Gaps = 15/136 (11%)
Query: 28 RQVQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQG 87
+ L K ++L + ++ +IE + K+M ++ +L+
Sbjct: 906 ELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQ---AEKKKMQQQMLDLEE 962
Query: 88 KLSDYNLTMDKV------------NTQTNIADIEEEYLELRAANDIETRHLEEQFTERSK 135
+L + K+ + +I +E++ +L + + + T ++
Sbjct: 963 QLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAE 1022
Query: 136 KQHQLHELEAEIEKLD 151
++ + L K +
Sbjct: 1023 EEEKAKNLTKLKNKHE 1038
Score = 31.7 bits (72), Expect = 0.092
Identities = 14/121 (11%), Positives = 43/121 (35%), Gaps = 9/121 (7%)
Query: 40 LQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKV 99
+Q ++ DL ++ + + E T K++++ + + KL+ +++
Sbjct: 953 MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER 1012
Query: 100 NTQTN---------IADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKL 150
+ ++ + + + L+++ R + + +LE E L
Sbjct: 1013 VSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDL 1072
Query: 151 D 151
Sbjct: 1073 H 1073
Score = 31.7 bits (72), Expect = 0.11
Identities = 17/116 (14%), Positives = 50/116 (43%), Gaps = 6/116 (5%)
Query: 40 LQLKIRDLTNEITRLKRQIE----LSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLT 95
L+ K L E L+ +++ L A+ + + +E+ L E++ ++ +
Sbjct: 883 LEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEER 942
Query: 96 MDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLD 151
++ Q ++++ L+L + E ++ E+ ++ ++E +I ++
Sbjct: 943 SQQL--QAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIME 996
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 37.4 bits (87), Expect = 0.001
Identities = 19/126 (15%), Positives = 45/126 (35%), Gaps = 3/126 (2%)
Query: 27 FRQVQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVK-EMATELTEL 85
R + +Y L+ + + ++ K A + K++ + ++ +L
Sbjct: 874 VRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQL 933
Query: 86 QGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEA 145
Q K+ + N + + + ++E Y + L E +++ L+
Sbjct: 934 QRKIDEQNKEYKSLLEK--MNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQE 991
Query: 146 EIEKLD 151
EI KL
Sbjct: 992 EIAKLR 997
Score = 35.5 bits (82), Expect = 0.006
Identities = 16/111 (14%), Positives = 42/111 (37%), Gaps = 15/111 (13%)
Query: 40 LQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKV 99
++ L EI +L++++ + E K + + + + + +
Sbjct: 982 ATNRVLSLQEEIAKLRKELHQTQTE----------KKTIEEWADKYKHETEQLVSELKEQ 1031
Query: 100 NTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKL 150
NT ++ E EL + + + E ++ ++ + EL+ E+L
Sbjct: 1032 NTL-----LKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERL 1077
Score = 35.1 bits (81), Expect = 0.008
Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 16/114 (14%)
Query: 40 LQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKV 99
L++ T ++ ++ +S +E RV + E+ +L+ +L
Sbjct: 954 LEITYSTETEKLRSDVERLRMSEEEAKNA---TNRVLSLQEEIAKLRKELHQ-------- 1002
Query: 100 NTQTNIADIEEEYLELRAANDIETRHLEEQFT----ERSKKQHQLHELEAEIEK 149
TQT IEE + + + L+EQ T E+ + ++H+ EI +
Sbjct: 1003 -TQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITE 1055
Score = 33.2 bits (76), Expect = 0.039
Identities = 16/119 (13%), Positives = 44/119 (36%), Gaps = 9/119 (7%)
Query: 40 LQLKIRDLTNEITRLKRQI-ELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDK 98
L+ KI L +I ++ L K + + Y +++ +++ L+ + ++
Sbjct: 926 LENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNR 985
Query: 99 VNT--------QTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEK 149
V + + + + E + D E+ +E ++ L + E+ +
Sbjct: 986 VLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNR 1044
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.14
Identities = 18/122 (14%), Positives = 38/122 (31%), Gaps = 32/122 (26%)
Query: 1 FSDSDRLVTQQGLSGLRTGSALRGPGFRQ------VQDKRYYEGLLQLKIRDLTNEITRL 54
+V +G+ + R R + R Q ++ + + +
Sbjct: 1779 IESLVEVVFYRGM--TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR 1836
Query: 55 K-------------RQI----ELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMD 97
+Q +L A + T +L +K ++ ELQ LS ++
Sbjct: 1837 TGWLVEIVNYNVENQQYVAAGDLRALDTVTNVL--NFIKLQKIDIIELQKSLS-----LE 1889
Query: 98 KV 99
+V
Sbjct: 1890 EV 1891
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 29.6 bits (67), Expect = 0.44
Identities = 25/140 (17%), Positives = 52/140 (37%), Gaps = 19/140 (13%)
Query: 28 RQVQDKRYYEGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYD-------------KR 74
++ + E Q KI L + R+ +++E A + +L + K
Sbjct: 868 QEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKN 927
Query: 75 VKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERS 134
++ E L+G+ N + + Q + EL +T ++ +S
Sbjct: 928 LEAFDGECQSLEGQS---NSDLLSILAQLTELN-YNGVPELTE--RKDTFFAQQWTGVKS 981
Query: 135 KKQHQLHELEAEIEKLDMID 154
+ + L AE+E+L I+
Sbjct: 982 SAETYKNTLLAELERLQKIE 1001
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 29.5 bits (67), Expect = 0.48
Identities = 8/53 (15%), Positives = 16/53 (30%), Gaps = 5/53 (9%)
Query: 6 RLVTQQGLSGLRTGSALRGPGFRQVQ-DKRYYEGLLQLKIRDLTNEITRLKRQ 57
+ S + G G V+ + + +I L E+ +K
Sbjct: 118 IIKETYTKSKIGEQQGPLGAGTYGVESTIK----FYKRRINKLMKELESIKIF 166
>3i5c_A Fusion of general control protein GCN4 and WSPR R regulator
protein; C-DI-GMP, ggdef, leucine zipper, signaling
protein; HET: C2E; 1.94A {Pseudomonas aeruginosa PAO1}
PDB: 3i5b_A*
Length = 206
Score = 28.7 bits (65), Expect = 0.71
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 123 TRHLEEQFTERSKKQHQLHELEAEIEKLDMID 154
+ LE++ E K + L A ++KL D
Sbjct: 2 MKQLEDKVEELLSKNYHLENEVARLKKLVNSD 33
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 0.76
Identities = 10/45 (22%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 109 EEEYLELRAANDIE--TRHLEEQFTERSKKQHQLHELEAEIEKLD 151
E+ +A D+E + EQ E++K +++ + +A ++ D
Sbjct: 108 MEQEWREKAKKDLEEWNQRQSEQ-VEKNKINNRIAD-KAFYQQPD 150
Score = 27.0 bits (59), Expect = 2.6
Identities = 10/77 (12%), Positives = 27/77 (35%), Gaps = 17/77 (22%)
Query: 71 YDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQF 130
KR++E+ ++ + + + ++ + + E N I R ++ F
Sbjct: 94 QRKRLQELDAASKVMEQEW--------REKAKKDLEEWNQRQSEQVEKNKINNRIADKAF 145
Query: 131 TERSKKQHQLHELEAEI 147
+ +A+I
Sbjct: 146 ---------YQQPDADI 153
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling
protein; HET: BCN; 2.90A {Escherichia coli} SCOP:
h.4.11.1
Length = 214
Score = 27.4 bits (60), Expect = 2.4
Identities = 17/132 (12%), Positives = 44/132 (33%), Gaps = 6/132 (4%)
Query: 37 EGLLQLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTM 96
+ + D+ I L R + S +E L D+ + E A + + + +L Y + M
Sbjct: 7 KPADEHSAGDIIARIGSLTRMLRDSLRE----LGLDQAIAEAAEAIPDARDRL-YYVVQM 61
Query: 97 DKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKLDMIDIS 156
+ + E + + + L +++ + L + +
Sbjct: 62 TAQAAER-ALNSVEASQPHQDQMEKSAKALTQRWDDWFADPIDLADARELVTDTRQFLAD 120
Query: 157 MWIDISTIDSLV 168
+ S ++ +
Sbjct: 121 VPAHTSFTNAQL 132
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 2.7
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 135 KKQHQLHELEAEIEKLDMIDISMWIDI-STID 165
+KQ L +L+A + KL D + + I +T++
Sbjct: 18 EKQ-ALKKLQASL-KLYADDSAPALAIKATME 47
Score = 26.5 bits (57), Expect = 3.8
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 49 NEITRLKRQIELSAKEHATFL 69
+ +L+ ++L A + A L
Sbjct: 20 QALKKLQASLKLYADDSAPAL 40
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel
inter domain, chaperone; 3.94A {Mycobacterium
tuberculosis} PDB: 3m9d_A
Length = 251
Score = 26.7 bits (58), Expect = 3.7
Identities = 12/74 (16%), Positives = 26/74 (35%)
Query: 77 EMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETRHLEEQFTERSKK 136
A EL +L+ + + ++ + +L A D + +
Sbjct: 21 GDAAELEQLRREAAVLREQLENAVGSHAPTRSARDIHQLEARIDSLAARNSKLMETLKEA 80
Query: 137 QHQLHELEAEIEKL 150
+ QL L E+++L
Sbjct: 81 RQQLLALREEVDRL 94
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 26.8 bits (60), Expect = 3.9
Identities = 24/151 (15%), Positives = 52/151 (34%), Gaps = 23/151 (15%)
Query: 15 GLRTGSALRGPGFRQVQDKRYYE-------GLLQLKIRDLTNEITRLK-----RQIELSA 62
+G RG + YE L L + L R+ EL +
Sbjct: 7 HHSSGLVPRGSATERQDRNLLYEHAREGYSALPLLDMESLCAYPEDAARALDLRKGELRS 66
Query: 63 KEHATFLLYDKRVKEMATELTELQGK---LSDYNLTMDKVNTQTNIADIEEEYLELRAAN 119
K+ + + ++++ ++ L+ + +++ + VN + + +Y LRA
Sbjct: 67 KDLPGIISTWQELRQLREQIRSLEEEKEAVTE-AVRALVVNQDNSQVQQDPQYQSLRA-- 123
Query: 120 DIETRHLEEQFTERSKKQHQLHELEAEIEKL 150
R + +Q T + +LE +
Sbjct: 124 --RGREIRKQLTL---LYPKEAQLEEQFYLR 149
>2p01_A Alpha-2-macroglobulin receptor-associated protein; RAP, cell
adhesion; NMR {Homo sapiens} PDB: 2p03_A
Length = 323
Score = 26.2 bits (57), Expect = 5.3
Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 2/113 (1%)
Query: 41 QLKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVN 100
+ K+ + + L R E+ + L D + + + TEL+ KL N +D++
Sbjct: 146 KEKVHEYNVLLETLSRTEEIHENVISPSDLSDIKGSVLHSRHTELKEKLRSINQGLDRLR 205
Query: 101 TQTNIADIEEEYLELRAANDIETRHLEEQFT--ERSKKQHQLHELEAEIEKLD 151
++ E E D+ T E + +L EA+IEK +
Sbjct: 206 RVSHQGYSTEAEFEEPRVIDLWDLAQSANLTDKELEAFREELKHFEAKIEKHN 258
>2qyx_A Uncharacterized protein MJ0159; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.50A
{Methanocaldococcus jannaschii DSM2661} PDB: 3nek_A
Length = 238
Score = 26.3 bits (58), Expect = 5.5
Identities = 10/57 (17%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 58 IELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLE 114
++ + ++ T R+K +++ K Y++ + N A I+++YL+
Sbjct: 2 LKKNPRDIVTKKANI-RIKTALSKMFNAMAK-VTYDIDEADGDVIVNTAFIDKKYLD 56
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 26.1 bits (58), Expect = 7.4
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 102 QTNIADIEEEYLELRAANDIETRHLEEQFTERSKKQHQLHELEAEIEKL 150
+ A + E + LR + R E+Q E + QL + E ++L
Sbjct: 2 GSMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKEL 50
>3iyu_X Outer capsid protein VP4; triple layered particle, NEAR atomic
resolution, double layered particle, de novo,
infectious, icosah virus; HET: NAG; 3.80A {Simian
rotavirus A} PDB: 1kri_A
Length = 776
Score = 25.8 bits (56), Expect = 8.2
Identities = 24/155 (15%), Positives = 57/155 (36%), Gaps = 27/155 (17%)
Query: 40 LQLKIRDLTNEITRLKRQIELS-------------------------AKEHATFLLYDKR 74
L+ ++ +L E L ++I +S AK AT ++ +
Sbjct: 494 LERQLGELREEFNALSQEIAMSQLIDLALLPLDMFSMFSGIKSTIDAAKSMATSVMKKFK 553
Query: 75 VKEMATELTELQGKLSDYNLTMDKVNTQTNI--ADIEEEYLELRAANDIETRHLEEQFTE 132
+A ++ L LSD ++ + + ++ + + + + + T
Sbjct: 554 KSGLANSVSTLTDSLSDAASSISRGASIRSVGSSASAWTDVSTQITDVSSSVSSISTQTS 613
Query: 133 RSKKQHQLHELEAEIEKLDMIDISMWIDISTIDSL 167
++ +L E+ + E ++ DIS + + ID
Sbjct: 614 TISRRLRLKEMATQTEGMNFDDISAAVLKTKIDRS 648
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.353
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,440,610
Number of extensions: 138601
Number of successful extensions: 450
Number of sequences better than 10.0: 1
Number of HSP's gapped: 420
Number of HSP's successfully gapped: 96
Length of query: 168
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 81
Effective length of database: 4,272,666
Effective search space: 346085946
Effective search space used: 346085946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 54 (25.1 bits)