RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14403
         (168 letters)



>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
           thermophilus [TaxId: 274]}
          Length = 387

 Score = 27.7 bits (61), Expect = 0.79
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 43  KIRDLTNEITRLKRQIELSAK----EHATFLLYDKRVKEMATELTELQGKLSDYNLTMDK 98
           K+R+  + +  ++R+IEL+ +      A  L Y + + ++  E+  L  KL        +
Sbjct: 314 KLREAQHRLDEVRREIELAERQYDLNRAAELRYGE-LPKLEAEVEALSEKLRGARFVRLE 372

Query: 99  VNTQTNIADI 108
           V  +  IA+I
Sbjct: 373 VTEED-IAEI 381


>d1ef1c_ a.137.5.1 (C:) Moesin tail domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 90

 Score = 24.8 bits (54), Expect = 2.9
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 3/40 (7%)

Query: 114 ELRAANDIETRHLEEQFTERSKKQH---QLHELEAEIEKL 150
           +LRA    + R  EE+ TE  K +     L  L +E+   
Sbjct: 6   DLRADAMAKDRSEEERTTEAEKNERVQKHLKALTSELANA 45


>d1c20a_ a.4.3.1 (A:) DNA-binding domain from the dead ringer
           protein {Fruit fly (Drosophila melanogaster) [TaxId:
           7227]}
          Length = 128

 Score = 24.1 bits (52), Expect = 6.1
 Identities = 7/25 (28%), Positives = 16/25 (64%)

Query: 130 FTERSKKQHQLHELEAEIEKLDMID 154
           F E+ K+  QL+E+  + ++ + +D
Sbjct: 4   FEEQFKQVRQLYEINDDPKRKEFLD 28


>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M
           protein {Bacteroides thetaiotaomicron [TaxId: 818]}
          Length = 425

 Score = 24.5 bits (52), Expect = 7.2
 Identities = 20/137 (14%), Positives = 44/137 (32%), Gaps = 11/137 (8%)

Query: 22  LRGPGFRQVQDKRYYEGLLQLKIRDLTNEITRLKRQI-------ELSAKEHATFL-LYDK 73
           L G G            LL LK+     E+   +  I       +L A +    +  Y++
Sbjct: 14  LAGQGIGFTDYITQLTYLLFLKMDAENVEMFGEESAIPTGYQWADLIAFDGLDLVKQYEE 73

Query: 74  RVKEMATELTELQGKLSDYNLTMDKVNTQTNIADIEEEYLELRAANDIETR---HLEEQF 130
            +K ++     +    +     +DK      +  + +E   L    D++      + E+ 
Sbjct: 74  TLKLLSELDNLIGTIYTKAQNKIDKPVYLKKVITMIDEEQWLIMDGDVKGAIYESILEKN 133

Query: 131 TERSKKQHQLHELEAEI 147
            +  K     +     +
Sbjct: 134 GQDKKSGAGQYFTPRPL 150


>d2ri9a1 a.102.2.1 (A:1036-1510) Class I alpha-1;2-mannosidase,
           catalytic domain {Fungus (Penicillium citrinum) [TaxId:
           5077]}
          Length = 475

 Score = 24.6 bits (53), Expect = 7.9
 Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 5/74 (6%)

Query: 42  LKIRDLTNEITRLKRQIELSAKEHATFLLYDKRVKEMATELTELQGKLSDYNLTMDKVNT 101
             I    + +  +   +         F      V    T +  L G LS Y+L       
Sbjct: 55  AVIMGKADVVNAILEHVA-----DIDFSKTSDTVSLFETTIRYLAGMLSGYDLLQGPAKN 109

Query: 102 QTNIADIEEEYLEL 115
             +  D+ +  L+ 
Sbjct: 110 LVDNQDLIDGLLDQ 123


>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA
           methyltransferase Trm1 {Pyrococcus horikoshii [TaxId:
           53953]}
          Length = 375

 Score = 24.2 bits (52), Expect = 9.0
 Identities = 10/81 (12%), Positives = 24/81 (29%), Gaps = 4/81 (4%)

Query: 13  LSGLRTGSALRGPGFRQVQDKRYYEGLLQLKIRDLTNEITRLKRQIE----LSAKEHATF 68
           L G    + LR      ++ +  +E   ++ +  +     +    I+         +   
Sbjct: 168 LCGAHPRACLRKYLAVPLRGELCHEVGTRILVGVIARYAAKYDLGIDVILAYYKDHYFRA 227

Query: 69  LLYDKRVKEMATELTELQGKL 89
            +  K       E  E  G +
Sbjct: 228 FVKLKDGARKGDETLEKLGYI 248


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.132    0.353 

Gapped
Lambda     K      H
   0.267   0.0536    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 570,917
Number of extensions: 24865
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 22
Length of query: 168
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 89
Effective length of database: 1,322,926
Effective search space: 117740414
Effective search space used: 117740414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 50 (23.5 bits)