Query psy14406
Match_columns 275
No_of_seqs 255 out of 1415
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 19:03:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14406.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14406hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02157 3-hydroxyisobutyryl-C 100.0 2.1E-50 4.5E-55 372.6 21.8 247 1-260 68-331 (401)
2 PLN02988 3-hydroxyisobutyryl-C 100.0 1.6E-47 3.4E-52 352.3 20.9 245 1-260 40-303 (381)
3 PRK05980 enoyl-CoA hydratase; 100.0 1.7E-46 3.7E-51 331.3 21.7 224 1-234 34-258 (260)
4 PLN02851 3-hydroxyisobutyryl-C 100.0 1.6E-46 3.4E-51 346.8 22.1 245 1-260 73-336 (407)
5 PRK05862 enoyl-CoA hydratase; 100.0 2.5E-46 5.4E-51 329.7 22.4 217 1-233 35-251 (257)
6 PRK09076 enoyl-CoA hydratase; 100.0 3E-46 6.6E-51 329.2 22.8 221 1-235 33-254 (258)
7 PRK06143 enoyl-CoA hydratase; 100.0 2.9E-46 6.3E-51 328.9 22.0 218 1-233 38-256 (256)
8 PRK06142 enoyl-CoA hydratase; 100.0 3.1E-46 6.8E-51 331.6 22.0 231 1-233 37-267 (272)
9 PLN02600 enoyl-CoA hydratase 100.0 4.4E-46 9.6E-51 326.9 22.6 219 1-233 26-245 (251)
10 PLN02664 enoyl-CoA hydratase/d 100.0 4.8E-46 1E-50 330.8 22.7 231 1-233 39-269 (275)
11 PRK08150 enoyl-CoA hydratase; 100.0 5.9E-46 1.3E-50 326.8 22.6 218 1-234 33-250 (255)
12 PRK07658 enoyl-CoA hydratase; 100.0 5.8E-46 1.3E-50 327.4 22.1 220 1-233 32-251 (257)
13 PRK05809 3-hydroxybutyryl-CoA 100.0 9.2E-46 2E-50 326.6 22.7 220 1-234 35-255 (260)
14 PRK09245 enoyl-CoA hydratase; 100.0 5.2E-46 1.1E-50 329.2 21.2 226 1-233 35-260 (266)
15 KOG1680|consensus 100.0 6.8E-47 1.5E-51 323.7 14.8 219 1-235 68-286 (290)
16 PRK07657 enoyl-CoA hydratase; 100.0 9.9E-46 2.1E-50 326.4 22.4 219 1-233 35-254 (260)
17 PRK09674 enoyl-CoA hydratase-i 100.0 1E-45 2.3E-50 325.3 22.2 217 1-233 33-249 (255)
18 PRK08139 enoyl-CoA hydratase; 100.0 1.5E-45 3.2E-50 326.2 22.8 221 1-235 42-262 (266)
19 PRK09120 p-hydroxycinnamoyl Co 100.0 1.1E-45 2.3E-50 328.4 21.8 223 1-233 39-264 (275)
20 TIGR02280 PaaB1 phenylacetate 100.0 1.5E-45 3.2E-50 324.6 22.4 221 1-233 30-250 (256)
21 PRK08138 enoyl-CoA hydratase; 100.0 1.5E-45 3.2E-50 325.4 22.4 217 1-233 39-255 (261)
22 PRK07511 enoyl-CoA hydratase; 100.0 1.7E-45 3.7E-50 324.9 22.3 224 1-235 34-257 (260)
23 PRK06563 enoyl-CoA hydratase; 100.0 1.4E-45 3E-50 324.6 21.4 221 1-234 30-250 (255)
24 PRK08258 enoyl-CoA hydratase; 100.0 1.9E-45 4E-50 327.4 22.4 225 1-235 48-273 (277)
25 PRK07260 enoyl-CoA hydratase; 100.0 1.5E-45 3.3E-50 324.3 21.4 223 1-233 33-255 (255)
26 PRK06127 enoyl-CoA hydratase; 100.0 3.6E-45 7.8E-50 324.2 22.6 222 1-234 42-264 (269)
27 PRK08140 enoyl-CoA hydratase; 100.0 4E-45 8.8E-50 322.8 22.3 223 1-234 35-257 (262)
28 PRK08252 enoyl-CoA hydratase; 100.0 4.3E-45 9.3E-50 321.2 21.9 217 1-235 34-250 (254)
29 PRK05995 enoyl-CoA hydratase; 100.0 4.3E-45 9.3E-50 322.7 21.4 223 1-235 35-258 (262)
30 PRK07799 enoyl-CoA hydratase; 100.0 6.2E-45 1.3E-49 321.8 21.2 222 1-233 36-257 (263)
31 PRK07468 enoyl-CoA hydratase; 100.0 8.1E-45 1.8E-49 320.9 21.9 222 1-234 36-257 (262)
32 PRK07659 enoyl-CoA hydratase; 100.0 7.4E-45 1.6E-49 320.8 21.5 220 1-235 37-256 (260)
33 PRK07327 enoyl-CoA hydratase; 100.0 7.7E-45 1.7E-49 321.9 21.5 218 1-234 43-263 (268)
34 PRK03580 carnitinyl-CoA dehydr 100.0 8.5E-45 1.8E-49 320.6 21.6 220 1-235 33-257 (261)
35 PRK05981 enoyl-CoA hydratase; 100.0 7.9E-45 1.7E-49 321.7 21.1 226 1-234 35-261 (266)
36 PRK06494 enoyl-CoA hydratase; 100.0 9.8E-45 2.1E-49 319.8 21.4 217 1-234 35-254 (259)
37 PRK06688 enoyl-CoA hydratase; 100.0 1E-44 2.3E-49 319.7 21.4 218 1-233 36-253 (259)
38 PRK05870 enoyl-CoA hydratase; 100.0 5.5E-45 1.2E-49 319.7 19.5 214 1-230 34-248 (249)
39 PRK07938 enoyl-CoA hydratase; 100.0 1.1E-44 2.4E-49 317.6 21.4 217 1-233 32-248 (249)
40 PRK06023 enoyl-CoA hydratase; 100.0 9.2E-45 2E-49 318.6 20.7 214 1-230 37-250 (251)
41 PRK05674 gamma-carboxygeranoyl 100.0 8.1E-45 1.8E-49 321.3 20.4 223 1-235 37-260 (265)
42 PLN02888 enoyl-CoA hydratase 100.0 1.4E-44 2.9E-49 319.7 21.3 215 1-232 41-257 (265)
43 PRK05864 enoyl-CoA hydratase; 100.0 1.5E-44 3.2E-49 321.4 21.2 227 1-234 41-270 (276)
44 PRK06210 enoyl-CoA hydratase; 100.0 1.4E-44 3E-49 321.1 20.9 228 1-233 37-266 (272)
45 COG1024 CaiD Enoyl-CoA hydrata 100.0 1.4E-44 3.1E-49 318.5 20.6 217 1-230 36-252 (257)
46 PRK07509 enoyl-CoA hydratase; 100.0 3.1E-44 6.6E-49 317.3 22.4 225 1-234 34-258 (262)
47 KOG1681|consensus 100.0 7E-46 1.5E-50 308.3 10.4 235 1-235 53-287 (292)
48 PRK08259 enoyl-CoA hydratase; 100.0 1.9E-44 4.1E-49 317.1 20.1 218 1-235 34-251 (254)
49 TIGR01929 menB naphthoate synt 100.0 2.8E-44 6E-49 316.9 21.0 220 1-234 34-254 (259)
50 PLN03214 probable enoyl-CoA hy 100.0 2.6E-44 5.7E-49 319.8 20.2 221 1-233 42-265 (278)
51 PF00378 ECH: Enoyl-CoA hydrat 100.0 2.1E-44 4.6E-49 315.2 19.2 216 1-230 29-244 (245)
52 PRK06495 enoyl-CoA hydratase; 100.0 5.5E-44 1.2E-48 314.7 21.8 219 1-234 34-252 (257)
53 PRK06144 enoyl-CoA hydratase; 100.0 7.3E-44 1.6E-48 314.7 22.2 217 1-234 39-257 (262)
54 TIGR03189 dienoyl_CoA_hyt cycl 100.0 9.3E-44 2E-48 312.1 21.6 215 1-235 31-247 (251)
55 PRK07110 polyketide biosynthes 100.0 8.6E-44 1.9E-48 312.1 21.3 210 1-227 36-245 (249)
56 TIGR03210 badI 2-ketocyclohexa 100.0 7.9E-44 1.7E-48 313.5 21.2 216 1-233 33-250 (256)
57 PRK06190 enoyl-CoA hydratase; 100.0 1.5E-43 3.2E-48 311.8 22.8 202 1-218 35-236 (258)
58 PRK07396 dihydroxynaphthoic ac 100.0 1.5E-43 3.3E-48 314.4 21.4 220 1-234 44-264 (273)
59 PRK08260 enoyl-CoA hydratase; 100.0 2.1E-43 4.5E-48 316.9 21.9 231 1-234 35-273 (296)
60 PRK06072 enoyl-CoA hydratase; 100.0 2.8E-43 6.1E-48 308.6 22.0 214 1-235 31-244 (248)
61 PRK07827 enoyl-CoA hydratase; 100.0 1.7E-43 3.7E-48 312.1 20.6 221 1-235 37-257 (260)
62 PRK12478 enoyl-CoA hydratase; 100.0 2.1E-43 4.6E-48 316.7 20.4 227 1-233 36-275 (298)
63 PLN02874 3-hydroxyisobutyryl-C 100.0 2.8E-43 6.1E-48 325.1 21.3 223 1-236 42-335 (379)
64 PRK11423 methylmalonyl-CoA dec 100.0 4.4E-43 9.4E-48 309.6 20.6 217 1-233 35-255 (261)
65 PRK07854 enoyl-CoA hydratase; 100.0 8.1E-43 1.8E-47 304.8 21.4 208 1-234 31-238 (243)
66 PRK05869 enoyl-CoA hydratase; 100.0 6.7E-43 1.5E-47 301.3 20.2 184 1-198 38-221 (222)
67 PLN02921 naphthoate synthase 100.0 1.1E-42 2.3E-47 315.0 21.5 221 1-235 98-319 (327)
68 PRK05617 3-hydroxyisobutyryl-C 100.0 4.6E-43 1E-47 319.9 19.0 224 1-235 34-321 (342)
69 PRK08321 naphthoate synthase; 100.0 7.3E-42 1.6E-46 307.5 21.0 228 1-233 56-292 (302)
70 KOG1684|consensus 100.0 7.4E-43 1.6E-47 307.5 13.8 244 3-259 71-334 (401)
71 PRK07112 polyketide biosynthes 100.0 2.1E-41 4.5E-46 298.0 20.2 217 1-235 35-251 (255)
72 PRK08272 enoyl-CoA hydratase; 100.0 2.4E-41 5.3E-46 304.3 19.3 242 1-269 41-298 (302)
73 KOG1679|consensus 100.0 3.7E-42 7.9E-47 283.8 11.9 221 1-234 62-286 (291)
74 TIGR03222 benzo_boxC benzoyl-C 100.0 6.1E-41 1.3E-45 319.8 22.0 222 1-236 302-541 (546)
75 PRK08788 enoyl-CoA hydratase; 100.0 1.7E-40 3.6E-45 295.7 21.1 206 1-217 47-261 (287)
76 PRK08290 enoyl-CoA hydratase; 100.0 2.1E-40 4.5E-45 296.2 21.1 212 1-216 35-257 (288)
77 PRK08184 benzoyl-CoA-dihydrodi 100.0 1.6E-40 3.4E-45 317.9 20.9 220 1-234 306-543 (550)
78 PRK06213 enoyl-CoA hydratase; 100.0 2E-40 4.3E-45 287.4 18.9 193 1-210 33-226 (229)
79 PRK11730 fadB multifunctional 100.0 6.1E-40 1.3E-44 324.5 20.7 223 1-234 38-299 (715)
80 TIGR03200 dearomat_oah 6-oxocy 100.0 9.7E-40 2.1E-44 294.3 19.4 227 1-256 59-302 (360)
81 PRK11154 fadJ multifunctional 100.0 1.6E-38 3.6E-43 314.3 21.1 220 1-233 38-295 (708)
82 TIGR02440 FadJ fatty oxidation 100.0 2E-38 4.3E-43 313.2 20.7 219 1-232 33-289 (699)
83 PLN02267 enoyl-CoA hydratase/i 100.0 5E-38 1.1E-42 273.8 19.7 185 1-196 30-219 (239)
84 TIGR02437 FadB fatty oxidation 100.0 1.7E-36 3.6E-41 299.6 20.4 222 1-233 38-298 (714)
85 KOG0016|consensus 100.0 2E-36 4.3E-41 257.0 16.9 223 1-230 39-261 (266)
86 TIGR02441 fa_ox_alpha_mit fatt 100.0 1.6E-34 3.5E-39 286.2 20.3 167 1-179 45-226 (737)
87 cd06558 crotonase-like Crotona 100.0 1.3E-34 2.8E-39 244.5 16.3 165 1-177 30-194 (195)
88 TIGR03222 benzo_boxC benzoyl-C 100.0 1.4E-33 3E-38 269.4 17.1 172 1-183 52-231 (546)
89 COG0447 MenB Dihydroxynaphthoi 100.0 2.6E-34 5.6E-39 237.6 8.6 222 1-235 50-274 (282)
90 PRK08184 benzoyl-CoA-dihydrodi 100.0 8.2E-33 1.8E-37 264.8 17.3 173 1-184 56-236 (550)
91 KOG1682|consensus 100.0 1.1E-31 2.3E-36 220.2 14.5 217 2-232 64-280 (287)
92 cd07014 S49_SppA Signal peptid 99.9 6E-21 1.3E-25 159.1 12.0 140 1-169 26-174 (177)
93 cd07020 Clp_protease_NfeD_1 No 99.8 1.7E-19 3.6E-24 151.7 12.9 137 2-170 18-172 (187)
94 cd07019 S49_SppA_1 Signal pept 99.7 1.3E-16 2.8E-21 136.6 9.2 81 1-109 25-105 (211)
95 TIGR00705 SppA_67K signal pept 99.6 1.1E-14 2.4E-19 141.6 9.2 153 2-188 334-532 (584)
96 cd00394 Clp_protease_like Case 99.5 4.5E-14 9.8E-19 115.7 11.2 129 1-160 15-161 (161)
97 cd07016 S14_ClpP_1 Caseinolyti 99.5 6.1E-14 1.3E-18 115.0 11.6 95 66-160 50-160 (160)
98 cd07022 S49_Sppa_36K_type Sign 99.5 2.8E-13 6E-18 116.3 11.3 83 1-112 29-111 (214)
99 cd07023 S49_Sppa_N_C Signal pe 99.5 2.5E-13 5.4E-18 116.0 11.0 135 1-163 21-200 (208)
100 TIGR00706 SppA_dom signal pept 99.5 1.2E-12 2.5E-17 111.9 13.3 138 1-172 17-203 (207)
101 cd07018 S49_SppA_67K_type Sign 99.4 1.9E-12 4.2E-17 111.7 9.0 138 1-170 33-219 (222)
102 cd07021 Clp_protease_NfeD_like 99.4 1.4E-11 2.9E-16 102.7 12.7 135 2-168 18-176 (178)
103 cd07015 Clp_protease_NfeD Nodu 99.0 1.7E-08 3.7E-13 83.4 12.8 135 2-168 18-170 (172)
104 PRK10949 protease 4; Provision 98.8 3.1E-08 6.8E-13 96.9 12.5 145 2-181 352-542 (618)
105 cd07013 S14_ClpP Caseinolytic 98.7 1.1E-07 2.4E-12 78.0 10.8 128 2-160 17-162 (162)
106 COG0616 SppA Periplasmic serin 98.6 3.2E-07 7E-12 83.2 10.5 129 2-163 85-262 (317)
107 PRK12319 acetyl-CoA carboxylas 98.5 2.7E-06 5.8E-11 74.7 13.9 93 60-163 122-214 (256)
108 PRK00277 clpP ATP-dependent Cl 98.5 1.2E-06 2.5E-11 74.5 10.6 97 67-163 82-196 (200)
109 PRK12553 ATP-dependent Clp pro 98.5 1.3E-06 2.7E-11 74.7 10.5 99 67-167 86-206 (207)
110 cd07017 S14_ClpP_2 Caseinolyti 98.4 1.6E-06 3.5E-11 71.8 8.9 128 2-160 26-171 (171)
111 PRK14512 ATP-dependent Clp pro 98.4 7.9E-06 1.7E-10 69.2 12.5 103 66-168 73-193 (197)
112 CHL00198 accA acetyl-CoA carbo 98.4 9.3E-06 2E-10 73.1 13.4 93 60-163 178-270 (322)
113 PRK11778 putative inner membra 98.3 6.6E-06 1.4E-10 74.6 12.2 103 67-171 147-293 (330)
114 PRK05724 acetyl-CoA carboxylas 98.3 2.2E-05 4.7E-10 70.8 13.3 93 60-163 175-267 (319)
115 TIGR00513 accA acetyl-CoA carb 98.3 3.5E-05 7.6E-10 69.4 14.6 93 60-163 175-267 (316)
116 PLN03230 acetyl-coenzyme A car 98.2 2.3E-05 5.1E-10 72.4 13.5 93 60-163 245-337 (431)
117 PLN03229 acetyl-coenzyme A car 98.1 5.6E-05 1.2E-09 74.1 14.4 121 60-191 266-398 (762)
118 PF00574 CLP_protease: Clp pro 98.1 5.8E-06 1.3E-10 69.0 6.5 98 66-163 66-181 (182)
119 TIGR00493 clpP ATP-dependent C 98.1 5E-05 1.1E-09 64.0 11.5 96 67-162 77-190 (191)
120 KOG1683|consensus 98.0 7.7E-07 1.7E-11 80.4 -0.4 159 2-173 87-251 (380)
121 CHL00028 clpP ATP-dependent Cl 98.0 8.8E-05 1.9E-09 62.9 11.8 98 66-163 80-196 (200)
122 PF13766 ECH_C: 2-enoyl-CoA Hy 98.0 6.8E-06 1.5E-10 63.8 3.5 54 200-260 17-70 (118)
123 PF01343 Peptidase_S49: Peptid 97.9 1.9E-05 4.1E-10 64.2 6.0 102 71-173 3-149 (154)
124 TIGR00705 SppA_67K signal pept 97.8 0.00018 3.9E-09 70.6 11.7 82 1-110 80-161 (584)
125 TIGR03133 malonate_beta malona 97.8 0.00038 8.3E-09 61.6 12.6 84 68-163 131-217 (274)
126 PRK07189 malonate decarboxylas 97.8 0.00056 1.2E-08 61.3 13.7 85 68-164 140-227 (301)
127 PRK14514 ATP-dependent Clp pro 97.8 0.00039 8.5E-09 59.8 11.7 97 67-163 105-219 (221)
128 PRK12551 ATP-dependent Clp pro 97.8 0.00032 7E-09 59.3 11.0 97 67-163 76-190 (196)
129 PF01972 SDH_sah: Serine dehyd 97.7 0.00039 8.5E-09 61.0 10.2 57 66-122 110-166 (285)
130 PRK14513 ATP-dependent Clp pro 97.6 0.0012 2.5E-08 56.1 11.7 96 66-163 77-192 (201)
131 TIGR03134 malonate_gamma malon 97.4 0.0011 2.5E-08 57.6 9.7 89 65-163 98-189 (238)
132 PRK10949 protease 4; Provision 97.4 0.0023 5.1E-08 63.1 12.6 81 2-110 100-180 (618)
133 COG0740 ClpP Protease subunit 97.2 0.0063 1.4E-07 51.3 11.5 95 67-163 78-192 (200)
134 PRK05654 acetyl-CoA carboxylas 97.2 0.0039 8.5E-08 55.9 10.8 97 67-182 187-284 (292)
135 TIGR00515 accD acetyl-CoA carb 97.2 0.0043 9.4E-08 55.4 10.5 94 67-179 186-280 (285)
136 COG0825 AccA Acetyl-CoA carbox 97.1 0.0024 5.2E-08 56.3 8.1 90 63-163 177-266 (317)
137 PRK12552 ATP-dependent Clp pro 96.9 0.02 4.2E-07 49.3 11.9 95 67-163 100-214 (222)
138 PF01039 Carboxyl_trans: Carbo 96.8 0.01 2.2E-07 57.2 10.8 86 67-176 125-218 (493)
139 CHL00174 accD acetyl-CoA carbo 96.7 0.039 8.5E-07 49.4 12.5 86 72-176 205-291 (296)
140 COG1030 NfeD Membrane-bound se 96.7 0.0096 2.1E-07 55.6 8.9 110 60-169 71-194 (436)
141 TIGR01117 mmdA methylmalonyl-C 96.4 0.05 1.1E-06 52.7 12.2 112 59-178 373-495 (512)
142 PF13766 ECH_C: 2-enoyl-CoA Hy 96.2 0.013 2.7E-07 45.5 5.7 65 171-235 33-98 (118)
143 COG0777 AccD Acetyl-CoA carbox 96.1 0.081 1.8E-06 46.5 10.4 101 63-182 184-285 (294)
144 TIGR01117 mmdA methylmalonyl-C 96.0 0.018 4E-07 55.7 6.9 89 74-180 154-245 (512)
145 PLN02820 3-methylcrotonyl-CoA 95.9 0.17 3.6E-06 49.6 12.9 87 69-178 200-294 (569)
146 PLN02820 3-methylcrotonyl-CoA 94.7 0.51 1.1E-05 46.3 12.0 112 58-177 423-553 (569)
147 COG4799 Acetyl-CoA carboxylase 94.6 0.049 1.1E-06 52.3 4.9 37 68-105 158-194 (526)
148 PLN02874 3-hydroxyisobutyryl-C 93.1 0.14 3.1E-06 47.7 4.9 38 223-260 266-303 (379)
149 PF01039 Carboxyl_trans: Carbo 92.6 0.32 6.9E-06 47.0 6.6 116 58-181 351-481 (493)
150 PLN02988 3-hydroxyisobutyryl-C 90.8 0.55 1.2E-05 43.9 5.9 65 173-237 268-336 (381)
151 PLN02851 3-hydroxyisobutyryl-C 89.8 0.81 1.8E-05 43.1 6.2 74 171-244 299-376 (407)
152 PLN02157 3-hydroxyisobutyryl-C 88.5 1 2.3E-05 42.3 5.9 71 173-243 296-370 (401)
153 KOG1684|consensus 86.0 1.5 3.2E-05 40.3 5.1 66 171-236 298-364 (401)
154 PF02601 Exonuc_VII_L: Exonucl 83.6 1.8 4E-05 39.1 4.7 74 1-105 59-136 (319)
155 TIGR00237 xseA exodeoxyribonuc 78.4 3.5 7.5E-05 39.2 4.8 72 2-104 175-247 (432)
156 KOG0840|consensus 78.1 14 0.0003 32.5 7.9 20 144-163 238-257 (275)
157 PF13607 Succ_CoA_lig: Succiny 78.0 6.5 0.00014 31.2 5.6 52 2-86 42-93 (138)
158 COG1570 XseA Exonuclease VII, 72.4 5.5 0.00012 37.8 4.3 74 1-104 180-253 (440)
159 COG4799 Acetyl-CoA carboxylase 70.6 11 0.00024 36.6 6.1 115 57-179 380-509 (526)
160 COG0074 SucD Succinyl-CoA synt 70.2 12 0.00026 33.4 5.7 22 2-23 188-209 (293)
161 PRK00286 xseA exodeoxyribonucl 69.8 7 0.00015 37.1 4.6 40 64-105 214-253 (438)
162 PF00549 Ligase_CoA: CoA-ligas 65.9 13 0.00029 30.1 4.8 24 2-25 61-84 (153)
163 PF06833 MdcE: Malonate decarb 65.8 15 0.00033 31.8 5.4 98 56-163 87-187 (234)
164 PTZ00187 succinyl-CoA syntheta 65.3 16 0.00035 33.2 5.8 23 2-24 212-234 (317)
165 smart00250 PLEC Plectin repeat 64.8 5.7 0.00012 23.9 1.9 19 142-160 18-36 (38)
166 KOG0540|consensus 64.6 62 0.0014 30.9 9.4 131 7-172 377-515 (536)
167 PRK05617 3-hydroxyisobutyryl-C 63.0 18 0.00039 33.2 5.7 39 225-263 258-296 (342)
168 PLN02522 ATP citrate (pro-S)-l 60.3 20 0.00044 35.6 5.9 23 2-24 210-233 (608)
169 PLN00125 Succinyl-CoA ligase [ 59.3 24 0.00051 31.9 5.7 23 2-24 193-215 (300)
170 PF00681 Plectin: Plectin repe 54.9 4.6 0.0001 25.4 0.3 21 141-161 17-37 (45)
171 TIGR02717 AcCoA-syn-alpha acet 43.2 70 0.0015 30.5 6.4 82 2-117 191-272 (447)
172 PRK04342 DNA topoisomerase VI 40.3 75 0.0016 29.6 6.0 45 74-118 241-287 (367)
173 PRK06091 membrane protein FdrA 40.2 77 0.0017 31.2 6.2 23 2-24 240-262 (555)
174 TIGR01019 sucCoAalpha succinyl 38.2 43 0.00094 30.0 3.9 23 2-24 186-208 (286)
175 KOG0610|consensus 35.0 30 0.00064 32.7 2.4 71 27-99 158-232 (459)
176 PRK05678 succinyl-CoA syntheta 34.0 54 0.0012 29.5 3.8 23 2-24 188-210 (291)
177 TIGR03200 dearomat_oah 6-oxocy 29.5 1.2E+02 0.0026 28.2 5.4 90 141-231 238-328 (360)
178 PLN00060 meiotic recombination 28.9 1.3E+02 0.0028 28.3 5.5 25 74-102 263-287 (384)
179 PRK14053 methyltransferase; Pr 27.2 69 0.0015 26.7 3.0 37 2-38 52-89 (194)
180 KOG1255|consensus 25.4 1.4E+02 0.0029 26.4 4.6 22 2-23 219-240 (329)
181 PF04208 MtrA: Tetrahydrometha 25.0 68 0.0015 26.5 2.6 36 2-37 55-91 (176)
182 TIGR01111 mtrA N5-methyltetrah 23.4 88 0.0019 27.0 3.0 37 2-38 59-96 (238)
183 PRK00964 tetrahydromethanopter 23.3 87 0.0019 27.0 3.0 37 2-38 59-96 (225)
184 PF12268 DUF3612: Protein of u 22.3 33 0.00071 27.6 0.3 25 14-38 79-103 (178)
185 PF00763 THF_DHG_CYH: Tetrahyd 22.2 62 0.0013 24.7 1.8 23 1-23 74-96 (117)
186 PF11524 SeleniumBinding: Sele 21.6 52 0.0011 23.3 1.1 37 140-176 9-45 (81)
187 PLN03037 lipase class 3 family 20.5 91 0.002 30.4 2.9 26 75-100 316-341 (525)
No 1
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=2.1e-50 Score=372.60 Aligned_cols=247 Identities=19% Similarity=0.288 Sum_probs=202.3
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
+|.++|+.|++|++|++|||+|.|++||+|+||+++...... + . ......++...+.+++.|.++|||+||+
T Consensus 68 ~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~--~--~----~~~~~~~~~~~~~l~~~i~~~pkPvIA~ 139 (401)
T PLN02157 68 RLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKR--G--S----PDAIREFFSSLYSFIYLLGTYLKPHVAI 139 (401)
T ss_pred HHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccc--c--c----hHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 477899999999999999999999999999999988642210 0 0 0112334445556778899999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|+|||+++|++|++|++++|+|++| . .+++|++||++++|+||+++||||++
T Consensus 140 v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G-~-~a~~L~LTG~~i~A~eA~~~GLv~~v 217 (401)
T PLN02157 140 LNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPG-R-LGEYLGLTGLKLSGAEMLACGLATHY 217 (401)
T ss_pred EeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhh-H-HHHHHHHcCCcCCHHHHHHcCCceEE
Confidence 999999999999999999999999999999999999999999999999999 3 79999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchH-----------------Hh
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNC-----------------NK 223 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----------------~e 223 (275)
||+ +++ +++.+++.+++..+|.++..+|+.++... .+....+..+.......+.++++ +.
T Consensus 218 Vp~-~~l-~~~~~~~~~i~~~~p~av~~~k~~~~~~~-~~~~~~l~~~~~~i~~~f~~~d~~ei~~al~~~~~kr~~~wa 294 (401)
T PLN02157 218 IRS-EEI-PVMEEQLKKLLTDDPSVVESCLEKCAEVA-HPEKTGVIRRIDLLEKCFSHDTVEEIIDSLEIEAGRRKDTWC 294 (401)
T ss_pred eCH-hHH-HHHHHHHHHHHcCCHHHHHHHHHHHhccc-CCcchhHHHHHHHHHHHhcCCCHHHHHHHHHhhhcccchHHH
Confidence 997 788 67779999999999999999999987652 22323333322222223333333 33
Q ss_pred ccccccccccCCcchhhHHHHHhccCccChHHHHHHH
Q psy14406 224 GVSPERMSHDCPECLIGSIGVFHTLDRVDLNQCDEDL 260 (275)
Q Consensus 224 ~~~~~~~~~~sp~~~~v~~~~~~~~~~~~~~~~~~~~ 260 (275)
.-+...++++||+|++||++++++++.+|+++||+..
T Consensus 295 ~~~~~~l~~~sP~Sl~vt~~~~~~~~~~~l~e~~~~e 331 (401)
T PLN02157 295 ITTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIRE 331 (401)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 3456678899999999999999999999999999863
No 2
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=1.6e-47 Score=352.27 Aligned_cols=245 Identities=20% Similarity=0.300 Sum_probs=197.4
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
+|.++|++|+.|++|++|||+|.|++||+|+|++++...... . .......++...+.+.+.+.++|||+||+
T Consensus 40 ~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~-----~---~~~~~~~~f~~~~~l~~~i~~~pKPvIa~ 111 (381)
T PLN02988 40 RLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQ-----G---NWRLGANFFSDEYMLNYVMATYSKAQVSI 111 (381)
T ss_pred HHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcc-----c---chhHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 478899999999999999999999999999999987532110 0 00011223333345567889999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++|||||++++++|+|||+++|++|++|++++|+|++|. .+++|++||++++|.||+++||||++
T Consensus 112 v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~--~~~~l~LTG~~i~a~eA~~~GLv~~v 189 (381)
T PLN02988 112 LNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF--FGEYVGLTGARLDGAEMLACGLATHF 189 (381)
T ss_pred ecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH--HHHHHHHcCCCCCHHHHHHcCCceEe
Confidence 9999999999999999999999999999999999999999999999999994 68999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh---cCC----------------HHHHHHHHHHHhhcccCCchH
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSR---DHA----------------VEEGLNQVDKESKNGCDRRNC 221 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~---~~~----------------~~~~l~~~~~~~~~~~~~~~~ 221 (275)
||+ +++.+.+.+++ +++..+|.++..+|+.++... ..+ +++.++..... .....+.
T Consensus 190 v~~-~~l~~~~~~la-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~~~~~i~~~L~~~---~~~~~~~ 264 (381)
T PLN02988 190 VPS-TRLTALEADLC-RIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFSRRTVEEIISALERE---ATQEADG 264 (381)
T ss_pred cCH-hHHHHHHHHHH-HhhccCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCCHHHHHHHHHhh---ccccccH
Confidence 997 88999888888 778888888888888876432 111 22222221110 0001234
Q ss_pred HhccccccccccCCcchhhHHHHHhccCccChHHHHHHH
Q psy14406 222 NKGVSPERMSHDCPECLIGSIGVFHTLDRVDLNQCDEDL 260 (275)
Q Consensus 222 ~e~~~~~~~~~~sp~~~~v~~~~~~~~~~~~~~~~~~~~ 260 (275)
+..-+...++++||+|++||++++++++.+|+++||+..
T Consensus 265 wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e 303 (381)
T PLN02988 265 WISATIQALKKASPASLKISLRSIREGRLQGVGQCLIRE 303 (381)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 566788899999999999999999999999999999863
No 3
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-46 Score=331.28 Aligned_cols=224 Identities=28% Similarity=0.413 Sum_probs=199.4
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCC-CCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVIS 79 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G-~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia 79 (275)
||.++++.++.|++|++|||+|.| ++||+|+|++++...... . .......+...++.++.++..+||||||
T Consensus 34 ~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~l~~~~kPvIa 105 (260)
T PRK05980 34 RLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAA-----G---ADVALRDFVRRGQAMTARLEAFPKPVIA 105 (260)
T ss_pred HHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccc-----c---chhhHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 478899999999999999999999 799999999987432110 0 0011233444556678889999999999
Q ss_pred EECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCccc
Q psy14406 80 AVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSK 159 (275)
Q Consensus 80 ~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~ 159 (275)
+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+ .++++++++|++++++||+++||||+
T Consensus 106 av~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~-~~a~~l~l~g~~~~a~eA~~~Glv~~ 184 (260)
T PRK05980 106 AVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGR-KRALELLLTGDAFSAERALEIGLVNA 184 (260)
T ss_pred EEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCH-HHHHHHHHcCCccCHHHHHHcCCCCc
Confidence 99999999999999999999999999999999999999999999999999995 89999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccccccC
Q psy14406 160 LYDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHDC 234 (275)
Q Consensus 160 vv~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~s 234 (275)
++|+ +++.+++.++++++++.+|.+++.+|+.++.....++++.+..+.......+.++++++++.+++.+|+.
T Consensus 185 vv~~-~~l~~~a~~~a~~la~~~p~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p 258 (260)
T PRK05980 185 VVPH-EELLPAARALARRIIRHSPVAVAAILTAVTRGLNLSIAEGLLIESEQFARMAGSADLREGLAAWIERRRP 258 (260)
T ss_pred ccCH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCC
Confidence 9997 8999999999999999999999999999999888889999999988888889999999999999887753
No 4
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.6e-46 Score=346.80 Aligned_cols=245 Identities=20% Similarity=0.285 Sum_probs=194.2
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
+|.++|+.|++|++|++|||+|.|++||+|+|++++.+.... .+ ......++...+.+.+.|.++|||+||+
T Consensus 73 eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~----~~----~~~~~~~f~~~~~l~~~i~~~pKPvIA~ 144 (407)
T PLN02851 73 RLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINE----GN----VEECKLFFENLYKFVYLQGTYLKPNVAI 144 (407)
T ss_pred HHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccc----cc----hHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 478899999999999999999999999999999988642210 00 0123445667788888999999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|+|||+++|++|++|++++|+|++|. .+++|++||++++|+||+++||+|++
T Consensus 145 v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~--~g~~L~LTG~~i~a~eA~~~GLa~~~ 222 (407)
T PLN02851 145 MDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGY--LGEYLALTGQKLNGVEMIACGLATHY 222 (407)
T ss_pred EcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCH--HHHHHHHhCCcCCHHHHHHCCCceee
Confidence 9999999999999999999999999999999999999999999999999994 59999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHH------------------HHHhhhc-CCHHHHHHHHHHHhhcccCCchH
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKK------------------TLVFSRD-HAVEEGLNQVDKESKNGCDRRNC 221 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~------------------~l~~~~~-~~~~~~l~~~~~~~~~~~~~~~~ 221 (275)
||+ +++ +.+.+.+.++...++.++...-+ .|+..+. .++++.++..... .....+.
T Consensus 223 v~~-~~l-~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~~sv~~I~~~L~~~---~~~~~~~ 297 (407)
T PLN02851 223 CLN-ARL-PLIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHDTVEEIIEALENE---AASSYDE 297 (407)
T ss_pred cCH-hhH-HHHHHHHHhhccCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCCCCHHHHHHHHHhc---ccccchH
Confidence 997 777 56666666665555444433222 2222222 1344444443321 1111234
Q ss_pred HhccccccccccCCcchhhHHHHHhccCccChHHHHHHH
Q psy14406 222 NKGVSPERMSHDCPECLIGSIGVFHTLDRVDLNQCDEDL 260 (275)
Q Consensus 222 ~e~~~~~~~~~~sp~~~~v~~~~~~~~~~~~~~~~~~~~ 260 (275)
+...+...++++||+|++||++++++++.+|+++||+..
T Consensus 298 wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E 336 (407)
T PLN02851 298 WCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLARE 336 (407)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 566788999999999999999999999999999999863
No 5
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.5e-46 Score=329.68 Aligned_cols=217 Identities=28% Similarity=0.402 Sum_probs=195.4
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
||.+++++++.|+++|+|||+|.|++||+|+|++++..... . ..+...+..++.+|.++||||||+
T Consensus 35 ~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~-------~-------~~~~~~~~~~~~~l~~~~kpvIaa 100 (257)
T PRK05862 35 ELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSF-------M-------DVYKGDYITNWEKVARIRKPVIAA 100 (257)
T ss_pred HHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccch-------h-------HHHHHHHHHHHHHHHhCCCCEEEE
Confidence 57889999999999999999999999999999998753210 0 011122344677899999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+ .++++|++||++++|+||+++||||++
T Consensus 101 v~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~-~~a~~l~l~g~~~~a~eA~~~Glv~~v 179 (257)
T PRK05862 101 VAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGK-AKAMDLCLTGRMMDAAEAERAGLVSRV 179 (257)
T ss_pred EccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCH-HHHHHHHHhCCccCHHHHHHcCCCCEe
Confidence 9999999999999999999999999999999999999999999999999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhcccccccccc
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHD 233 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 233 (275)
+|+ +++.+++.++++++++.+|.+++.+|+.++.....++++.++.+.......+.++++++++..+..+|+
T Consensus 180 v~~-~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr~ 251 (257)
T PRK05862 180 VPA-DKLLDEALAAATTIASFSLPAVMMAKEAVNRAYETTLAEGLLFERRLFHSLFATEDQKEGMAAFVEKRK 251 (257)
T ss_pred eCH-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCC
Confidence 997 899999999999999999999999999999988888999999988888888899999999999987664
No 6
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3e-46 Score=329.25 Aligned_cols=221 Identities=23% Similarity=0.367 Sum_probs=197.4
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCC-CCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVIS 79 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G-~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia 79 (275)
+|.++++++++|+++++|||+|.| ++||+|+|++++..... . ....+...++.++.++.++||||||
T Consensus 33 ~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~------~------~~~~~~~~~~~~~~~l~~~~kPvIA 100 (258)
T PRK09076 33 ALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDK------A------VAREMARRFGEAFEALSAFRGVSIA 100 (258)
T ss_pred HHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcCh------h------hHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 478899999999999999999999 79999999998743111 0 0112234456778889999999999
Q ss_pred EECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCccc
Q psy14406 80 AVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSK 159 (275)
Q Consensus 80 ~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~ 159 (275)
+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+ .++++|+++|++++|+||+++||||+
T Consensus 101 av~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~-~~a~~l~l~g~~~~a~eA~~~Glv~~ 179 (258)
T PRK09076 101 AINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGE-GWAKRMILCGERVDAATALRIGLVEE 179 (258)
T ss_pred EECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCH-HHHHHHHHcCCcCCHHHHHHCCCCce
Confidence 99999999999999999999999999999999999999999999999999995 89999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccccccCC
Q psy14406 160 LYDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHDCP 235 (275)
Q Consensus 160 vv~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~sp 235 (275)
++|+ +++.+++.+++++++..+|.+++.+|+.++.....++++.+..+.......+.+++++|++..+..+|+.+
T Consensus 180 vv~~-~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~ 254 (258)
T PRK09076 180 VVEK-GEAREAALALAQKVANQSPSAVAACKTLIQAARNGPRAAALALERELFVDLFDTEDQREGVNAFLEKRAPQ 254 (258)
T ss_pred ecCc-hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence 9997 89999999999999999999999999999988777899999988888788889999999999998866543
No 7
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.9e-46 Score=328.89 Aligned_cols=218 Identities=27% Similarity=0.396 Sum_probs=195.9
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCC-CCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVIS 79 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G-~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia 79 (275)
+|.++|++++.|++||+|||+|.| ++||+|+|++++..... .....+...++.++..+.++||||||
T Consensus 38 ~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~kPvIA 105 (256)
T PRK06143 38 ALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQ------------ASAEAFISRLRDLCDAVRHFPVPVIA 105 (256)
T ss_pred HHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcCh------------hhHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 578899999999999999999999 79999999998743211 01123445566788899999999999
Q ss_pred EECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCccc
Q psy14406 80 AVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSK 159 (275)
Q Consensus 80 ~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~ 159 (275)
+|||+|+|||++|+++||+||++++++|++||+++|+ |+.|++++|++++|+ .++++++++|++++|+||+++||||+
T Consensus 106 av~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~-~~a~~l~l~g~~~~a~eA~~~Glv~~ 183 (256)
T PRK06143 106 RIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGW-ARTRWLLLTGETIDAAQALAWGLVDR 183 (256)
T ss_pred EECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCH-HHHHHHHHcCCcCCHHHHHHCCCcCe
Confidence 9999999999999999999999999999999999998 888889999999995 89999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhcccccccccc
Q psy14406 160 LYDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHD 233 (275)
Q Consensus 160 vv~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 233 (275)
+||+ +++.+++.+++++++..||.+++.+|+.++.....++++.+..+.......+.++|+++++..+..+|+
T Consensus 184 vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~ 256 (256)
T PRK06143 184 VVPL-AELDAAVERLAASLAGCGPQALRQQKRLLREWEDMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFLNRKR 256 (256)
T ss_pred ecCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcC
Confidence 9997 899999999999999999999999999999988888999999888888888899999999998887663
No 8
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.1e-46 Score=331.60 Aligned_cols=231 Identities=43% Similarity=0.702 Sum_probs=199.7
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
+|.++|++++.|++|++|||+|.|++||+|+|++++......... ............+...+++++..+..+||||||+
T Consensus 37 ~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAa 115 (272)
T PRK06142 37 ELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGK-DGLARPRTDLRREILRLQAAINAVADCRKPVIAA 115 (272)
T ss_pred HHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccc-cccccchHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 478899999999999999999999999999999987531100000 0000001122333445567888899999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++|+.|++++|++++|+ .++++|+++|++++|+||+++||||++
T Consensus 116 v~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~-~~a~~l~l~g~~~~a~eA~~~GLv~~v 194 (272)
T PRK06142 116 VQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRIIGD-GHLRELALTGRDIDAAEAEKIGLVNRV 194 (272)
T ss_pred ecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHHhCH-HHHHHHHHhCCCcCHHHHHHcCCccEe
Confidence 9999999999999999999999999999999999999999999999999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhcccccccccc
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHD 233 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 233 (275)
+++.+++.+++.+++++|+..||.+++.+|+.++.....++++.+..+..+....+.++|++||+.++..+|+
T Consensus 195 v~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr~ 267 (272)
T PRK06142 195 YDDADALLAAAHATAREIAAKSPLAVRGTKEVLDYMRDHRVADGLRYVATWNAAMLPSKDLTEAIAAHMEKRP 267 (272)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCC
Confidence 9854789999999999999999999999999999888888999999888888888899999999999988664
No 9
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=4.4e-46 Score=326.91 Aligned_cols=219 Identities=27% Similarity=0.459 Sum_probs=197.9
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCC-CCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVIS 79 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G-~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia 79 (275)
||.+++++++.|++||+|||+|.| ++||+|+|++++..... + ....+...++.++.++..+||||||
T Consensus 26 ~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~------~------~~~~~~~~~~~~~~~l~~~~kPvIA 93 (251)
T PLN02600 26 GLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSP------S------EVQKFVNSLRSTFSSLEALSIPTIA 93 (251)
T ss_pred HHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccCh------H------HHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 578899999999999999999985 89999999998743211 0 1123344556778889999999999
Q ss_pred EECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCccc
Q psy14406 80 AVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSK 159 (275)
Q Consensus 80 ~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~ 159 (275)
+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+ .++++|++||++++++||+++||||+
T Consensus 94 av~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~-~~a~~l~ltg~~~~a~eA~~~Glv~~ 172 (251)
T PLN02600 94 VVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGR-SRAKELIFTGRRIGAREAASMGLVNY 172 (251)
T ss_pred EecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCH-HHHHHHHHhCCccCHHHHHHcCCCcE
Confidence 99999999999999999999999999999999999999999999999999995 89999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhcccccccccc
Q psy14406 160 LYDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHD 233 (275)
Q Consensus 160 vv~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 233 (275)
+||+ +++.+++.+++++|+..||.+++.+|+.++.....++++.++.+.......+.++|++|++.++..+|+
T Consensus 173 vv~~-~~~~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~ 245 (251)
T PLN02600 173 CVPA-GEAYEKALELAQEINQKGPLAIKMAKKAINEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAFAEKRK 245 (251)
T ss_pred eeCh-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCC
Confidence 9997 899999999999999999999999999999888888999999988888888899999999999988764
No 10
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=4.8e-46 Score=330.84 Aligned_cols=231 Identities=43% Similarity=0.686 Sum_probs=199.2
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
||.++|+.++.|+++++|||+|.|++||+|+|++++........ ..+..........+...+++++..|.++||||||+
T Consensus 39 ~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 117 (275)
T PLN02664 39 EFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSS-SGDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAA 117 (275)
T ss_pred HHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccc-cccchhhHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 47889999999999999999999999999999998753211000 00000001122344455567788999999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++|+.|++++|++++|+ .+++++++||++++|+||+++||||++
T Consensus 118 v~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~-~~A~~l~ltg~~~~a~eA~~~GLv~~v 196 (275)
T PLN02664 118 IHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGY-GNAMELALTGRRFSGSEAKELGLVSRV 196 (275)
T ss_pred ECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCH-HHHHHHHHhCCCCCHHHHHHcCCCcee
Confidence 9999999999999999999999999999999999999999999999999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhcccccccccc
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHD 233 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 233 (275)
||+.+++.+.+.+++++|+..+|.+++.+|+.++.....++.+.++.+.......+.++|++|++..+..+|+
T Consensus 197 v~~~~~l~~~~~~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~ 269 (275)
T PLN02664 197 FGSKEDLDEGVRLIAEGIAAKSPLAVTGTKAVLLRSRELSVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKRK 269 (275)
T ss_pred eCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccChhHHHHHHHHhccCC
Confidence 9843789999999999999999999999999999888778999999888777778899999999999988764
No 11
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.9e-46 Score=326.76 Aligned_cols=218 Identities=26% Similarity=0.392 Sum_probs=193.6
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
||.++++.++ +++|+|||||.|++||+|+|++++..... .. ...+...++.++.+|.++||||||+
T Consensus 33 ~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~-----~~-------~~~~~~~~~~~~~~l~~~~kPvIaa 98 (255)
T PRK08150 33 ALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDA-----GE-------GMHHSRRWHRVFDKIQYGRVPVIAA 98 (255)
T ss_pred HHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccc-----hh-------HHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 4778888886 89999999999999999999998753211 00 1122344567788899999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+ .++++|++||++++|+||+++||||++
T Consensus 99 v~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~-~~a~~l~ltg~~~~a~eA~~~Glv~~v 177 (255)
T PRK08150 99 LHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGV-ARMTDMMLTGRVYDAQEGERLGLAQYL 177 (255)
T ss_pred ECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCH-HHHHHHHHcCCcCCHHHHHHcCCccEe
Confidence 9999999999999999999999999999999999999999999999999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccccccC
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHDC 234 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~s 234 (275)
||+ +++.+++.+++++|+..+|.+++.+|+.++.....++++.+..+.......+.++|+++++..+..+|+.
T Consensus 178 v~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~~kr~p 250 (255)
T PRK08150 178 VPA-GEALDKAMELARRIAQNAPLTNFAVLNALPRIADMSADDGLFVESLMAAVAQSAPEAKERLRAFLEKKAA 250 (255)
T ss_pred eCc-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCC
Confidence 997 8999999999999999999999999999998888889999888877777778899999999988876643
No 12
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.8e-46 Score=327.38 Aligned_cols=220 Identities=30% Similarity=0.506 Sum_probs=197.8
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
+|.+++++++.|++|++|||+|.|++||+|+|++++..... .+ ....+....+.++.++..+||||||+
T Consensus 32 ~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~-----~~------~~~~~~~~~~~~~~~l~~~~kpvIAa 100 (257)
T PRK07658 32 ELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTE-----AE------QATELAQLGQVTFERVEKFSKPVIAA 100 (257)
T ss_pred HHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCc-----hh------hHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 47889999999999999999999999999999998753211 00 11223344566788899999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+ .++++|+++|++++++||+++||||++
T Consensus 101 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~-~~a~~l~l~g~~~~a~eA~~~Glv~~v 179 (257)
T PRK07658 101 IHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGK-AKALEMMLTSEPITGAEALKWGLVNGV 179 (257)
T ss_pred EcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCH-HHHHHHHHcCCCcCHHHHHHcCCcCee
Confidence 9999999999999999999999999999999999999999999999999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhcccccccccc
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHD 233 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 233 (275)
+|. +++.+++.+++++++..+|.+++.+|+.++.....++++.++.+...+...+.+++.++++..+..+|+
T Consensus 180 v~~-~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~ 251 (257)
T PRK07658 180 FPE-ETLLDDAKKLAKKIAGKSPATTRAVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRK 251 (257)
T ss_pred cCh-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCC
Confidence 997 899999999999999999999999999999888778999999988888888899999999999988654
No 13
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=9.2e-46 Score=326.61 Aligned_cols=220 Identities=31% Similarity=0.458 Sum_probs=197.9
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCC-CCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVIS 79 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G-~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia 79 (275)
+|.+++++++.|+++++|||+|.| ++||+|+|++++..... + ....+....++++.++.++||||||
T Consensus 35 ~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~------~------~~~~~~~~~~~~~~~l~~~~kPvIa 102 (260)
T PRK05809 35 ELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNE------E------EGRKFGLLGNKVFRKLENLDKPVIA 102 (260)
T ss_pred HHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccCh------H------HHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 478899999999999999999999 99999999998753211 0 0112233445678889999999999
Q ss_pred EECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCccc
Q psy14406 80 AVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSK 159 (275)
Q Consensus 80 ~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~ 159 (275)
+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+ .++++|+++|++++++||+++||||+
T Consensus 103 av~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~-~~a~~l~l~g~~~~a~eA~~~Glv~~ 181 (260)
T PRK05809 103 AINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGP-GKAKELIYTGDMINAEEALRIGLVNK 181 (260)
T ss_pred EEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCH-HHHHHHHHhCCCCCHHHHHHcCCCCc
Confidence 99999999999999999999999999999999999999999999999999995 89999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccccccC
Q psy14406 160 LYDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHDC 234 (275)
Q Consensus 160 vv~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~s 234 (275)
++|+ +++.+.+.+++++++..||.+++.+|+.++.....++++.++.+.......+.++++++++..+..+|+.
T Consensus 182 vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p 255 (260)
T PRK05809 182 VVEP-EKLMEEAKALANKIAANAPIAVKLCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKREK 255 (260)
T ss_pred ccCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCC
Confidence 9997 8999999999999999999999999999999888889999998888888888999999999999886643
No 14
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.2e-46 Score=329.22 Aligned_cols=226 Identities=28% Similarity=0.354 Sum_probs=196.0
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
+|.+++++++.|++|++|||+|.|++||+|+|++++............ .....+...++.++.++.++||||||+
T Consensus 35 ~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~kpvIaa 109 (266)
T PRK09245 35 ALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPA-----DIRQGYRHGIQRIPLALYNLEVPVIAA 109 (266)
T ss_pred HHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccch-----hHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 477899999999999999999999999999999987532110000000 001112233456778899999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+ .++++|+++|++++|+||+++||||++
T Consensus 110 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~-~~a~~l~l~g~~~~a~eA~~~Glv~~v 188 (266)
T PRK09245 110 VNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGM-ARAAEMAFTGDAIDAATALEWGLVSRV 188 (266)
T ss_pred ECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhH-HHHHHHHHcCCCcCHHHHHHcCCccee
Confidence 9999999999999999999999999999999999999999999999999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhcccccccccc
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHD 233 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 233 (275)
+|+ +++.+++.+++++|+..||.+++.+|+.++.....++++.+..+.......+.++|+++++..+..+|+
T Consensus 189 v~~-~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~ 260 (266)
T PRK09245 189 VPA-DQLLPAARALAERIAANPPHALRLTKRLLREGQHASLDTLLELSAAYQALAHHTADHREAVDAFLEKRP 260 (266)
T ss_pred cCH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHHcCCC
Confidence 997 899999999999999999999999999999988878988888887777778899999999999887664
No 15
>KOG1680|consensus
Probab=100.00 E-value=6.8e-47 Score=323.74 Aligned_cols=219 Identities=31% Similarity=0.465 Sum_probs=196.9
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
||.++|..+++|+.++++||||.|++||+|.||+++..... .+. ....+.+.+..+.+.+||+||+
T Consensus 68 eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~-----~~~---------~~~~~~~~~~~~~~~~KPvIaa 133 (290)
T KOG1680|consen 68 ELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEF-----QDV---------SDGIFLRVWDLVSRLKKPVIAA 133 (290)
T ss_pred HHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccc-----ccc---------ccccccchhhhhhhcccceeEe
Confidence 58899999999999999999999999999999999865221 010 0011222334444789999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|++.||+|||+++|+|++|+.++|++|.+|++.+|+|.+|. ++|+++++||++++++||+++|||++|
T Consensus 134 inG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~-s~Ale~~ltg~~~~AqeA~~~GlVn~V 212 (290)
T KOG1680|consen 134 INGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGK-SRALEMILTGRRLGAQEAKKIGLVNKV 212 (290)
T ss_pred eeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhCh-HHHHHHHHhcCcccHHHHHhCCceeEe
Confidence 9999999999999999999999999999999999999999999999999996 999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccccccCC
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHDCP 235 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~sp 235 (275)
||. +++..+|.+++++|++.||.+++..|+.++.+.+.++.+.+..+...+...+..+|..||++.+..+|...
T Consensus 213 vp~-~~~l~eAv~l~~~Ia~~~~~~v~~~K~svn~~~e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~~kr~~~ 286 (290)
T KOG1680|consen 213 VPS-GDALGEAVKLAEQIAKNSPLVVRADKESVNAAYETTLFEGLELERDLFGSTFATEDRLEGMTAFAEKRKPK 286 (290)
T ss_pred ecc-hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccHHHHHHhhhhhhhhhhhhHHHHHHHHHhcccCCcc
Confidence 998 89999999999999999999999999999999999999999999999888999999999999998776544
No 16
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.9e-46 Score=326.38 Aligned_cols=219 Identities=31% Similarity=0.509 Sum_probs=198.0
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCC-CCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVIS 79 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G-~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia 79 (275)
||.+++++++.|+++++|||+|.| ++||+|+|++++..... .....+...++.++..+.++||||||
T Consensus 35 ~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~kPvIa 102 (260)
T PRK07657 35 ELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNE------------EQVRHAVSLIRTTMEMVEQLPQPVIA 102 (260)
T ss_pred HHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCCh------------hhHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 578899999999999999999999 59999999998743211 01223345567778899999999999
Q ss_pred EECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCccc
Q psy14406 80 AVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSK 159 (275)
Q Consensus 80 ~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~ 159 (275)
+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+ .++++++++|++++++||+++||||+
T Consensus 103 av~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~-~~a~~l~l~g~~~~a~eA~~~Glv~~ 181 (260)
T PRK07657 103 AINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGV-GRAKELIYTGRRISAQEAKEIGLVEF 181 (260)
T ss_pred EEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCH-HHHHHHHHhCCCCCHHHHHHcCCCCe
Confidence 99999999999999999999999999999999999999999999999999995 89999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhcccccccccc
Q psy14406 160 LYDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHD 233 (275)
Q Consensus 160 vv~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 233 (275)
++|+ +++.+++.+++++++..+|.+++.+|+.++.....++++.+..+.......+.++++++++..+..+|+
T Consensus 182 vv~~-~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r~ 254 (260)
T PRK07657 182 VVPA-HLLEEKAIEIAEKIASNGPIAVRQAKEAISNGIQVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRK 254 (260)
T ss_pred ecCH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCC
Confidence 9997 899999999999999999999999999999988888999999888888888899999999998887664
No 17
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=1e-45 Score=325.32 Aligned_cols=217 Identities=27% Similarity=0.413 Sum_probs=195.3
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
||.++++++++|++||+|||+|.|++||+|+|++++..... . ..+......++.++..+||||||+
T Consensus 33 ~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-------~-------~~~~~~~~~~~~~l~~~~kPvIAa 98 (255)
T PRK09674 33 QLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDL-------A-------ATLNDPRPQLWQRLQAFNKPLIAA 98 (255)
T ss_pred HHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccch-------h-------hhHHHHHHHHHHHHHhCCCCEEEE
Confidence 57889999999999999999999999999999998743110 0 011123345677889999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+ .++++++++|++++++||+++||||++
T Consensus 99 v~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~-~~a~~l~l~g~~~~a~eA~~~Glv~~v 177 (255)
T PRK09674 99 VNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGK-SLASQMVLTGESITAQQAQQAGLVSEV 177 (255)
T ss_pred ECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCH-HHHHHHHHcCCccCHHHHHHcCCCcEe
Confidence 9999999999999999999999999999999999999999999999999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhcccccccccc
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHD 233 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 233 (275)
||+ +++.+++.+++++++..||.+++.+|+.++.....++++.++.+.......+.++++++++..+..+|+
T Consensus 178 v~~-~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~~kr~ 249 (255)
T PRK09674 178 FPP-ELTLERALQLASKIARHSPLALRAAKQALRQSQEVDLQAGLAQERQLFTLLAATEDRHEGISAFLEKRT 249 (255)
T ss_pred cCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCC
Confidence 997 889999999999999999999999999999988888999999988888888899999999999988653
No 18
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.5e-45 Score=326.17 Aligned_cols=221 Identities=26% Similarity=0.401 Sum_probs=196.5
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
||.+++++++.|++|++|||+|.|++||+|+|++++..... ......+++.+.+++.++.++||||||+
T Consensus 42 ~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~kPvIAa 110 (266)
T PRK08139 42 ALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARG-----------LAYFRALFARCSRVMQAIVALPQPVIAR 110 (266)
T ss_pred HHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccc-----------hhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 47889999999999999999999999999999998743111 0112233455667888999999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++|||||++++++|++||+++|++|+++ +++|++++|+ .++++|++||++++|+||+++||||++
T Consensus 111 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~-~~A~~l~ltg~~~~a~eA~~~GLv~~v 188 (266)
T PRK08139 111 VHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPR-KQAMEMLLTGEFIDAATAREWGLVNRV 188 (266)
T ss_pred ECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCH-HHHHHHHHcCCccCHHHHHHcCCccEe
Confidence 99999999999999999999999999999999999999775 5689999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccccccCC
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHDCP 235 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~sp 235 (275)
+|+ +++.+.+.+++++|+..||.+++.+|+.++.....++++.+..+.......+.++|+++++..+..+|+.+
T Consensus 189 v~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 262 (266)
T PRK08139 189 VPA-DALDAAVARLAAVIAAKSPAAVRIGKEAFYRQAEMPLADAYAYAGDVMAENMMAEDAEEGIDAFLEKRPPE 262 (266)
T ss_pred eCh-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence 997 89999999999999999999999999999998888899999988888778889999999999998776443
No 19
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=1.1e-45 Score=328.41 Aligned_cols=223 Identities=23% Similarity=0.351 Sum_probs=192.9
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
||.++++.++.|++|++|||+|.|++||+|+|++++...... . .. .....+...++.++..+..+||||||+
T Consensus 39 el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~--~-~~-----~~~~~~~~~~~~~~~~l~~~~kPvIAa 110 (275)
T PRK09120 39 EMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDA--Q-PE-----ILQERIRREAYGWWRRLRWYQKPTIAM 110 (275)
T ss_pred HHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhcccc--c-hh-----HHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 578899999999999999999999999999999987431110 0 00 001122234456788899999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+ .++++|++||++++|+||+++||||++
T Consensus 111 v~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~-~~a~~llltg~~~~A~eA~~~Glv~~v 189 (275)
T PRK09120 111 VNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGH-RDALYYIMTGETFTGRKAAEMGLVNES 189 (275)
T ss_pred EcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCH-HHHHHHHhcCCccCHHHHHHcCCccee
Confidence 9999999999999999999999999999999999999999999999999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHH--HhhcccCCc-hHHhcccccccccc
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDK--ESKNGCDRR-NCNKGVSPERMSHD 233 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~--~~~~~~~~~-~~~e~~~~~~~~~~ 233 (275)
||+ +++.+++.+++++|+..||.+++.+|+.++.....++.+.++.+.. .....+.++ |+.|++.+++.+|.
T Consensus 190 v~~-~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl~kr~ 264 (275)
T PRK09120 190 VPL-AQLRARTRELAAKLLEKNPVVLRAAKDGFKRVRELTWDQAEDYLYAKLEQANSLDPEGGREEGLKQFLDDKS 264 (275)
T ss_pred cCH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhccc
Confidence 997 8999999999999999999999999999999888888888877643 233346777 89999999988775
No 20
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=1.5e-45 Score=324.56 Aligned_cols=221 Identities=26% Similarity=0.394 Sum_probs=194.7
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
||.+++++++.|+ +++|||+|.|++||+|+|++++...... ..+ ....+...+..++.++..+||||||+
T Consensus 30 ~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~---~~~------~~~~~~~~~~~~~~~l~~~~kPvIaa 99 (256)
T TIGR02280 30 ELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGG---APD------LGRTIETFYNPLVRRLRALPLPVVCA 99 (256)
T ss_pred HHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhcccc---chh------HHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 4788999999998 9999999999999999999987531110 000 00111222345678899999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+ .++++|+++|++++++||+++||||++
T Consensus 100 v~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~-~~a~~l~l~g~~~~a~eA~~~Glv~~v 178 (256)
T TIGR02280 100 VNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGR-ARAMGLAMLGEKLDARTAASWGLIWQV 178 (256)
T ss_pred ECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCH-HHHHHHHHcCCCCCHHHHHHcCCccee
Confidence 9999999999999999999999999999999999999999999999999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhcccccccccc
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHD 233 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 233 (275)
+|+ +++.+++.+++++++..||.+++.+|+.++.....++.+.++.+.......+.++|+++++..+..+|+
T Consensus 179 v~~-~~l~~~a~~~a~~la~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~ 250 (256)
T TIGR02280 179 VDD-AALMDEAQALAVHLAAQPTRGLALTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKRN 250 (256)
T ss_pred eCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCCC
Confidence 997 899999999999999999999999999999988888999999888888888899999999999987653
No 21
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-45 Score=325.37 Aligned_cols=217 Identities=31% Similarity=0.479 Sum_probs=195.5
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
+|.++++.+++|++||+|||+|.|++||+|+|++++.... . ...+...+++++..+..+|||+||+
T Consensus 39 ~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~-------~-------~~~~~~~~~~~~~~l~~~~kPvIaa 104 (261)
T PRK08138 39 QLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAG-------A-------IEMYLRHTERYWEAIAQCPKPVIAA 104 (261)
T ss_pred HHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccc-------h-------hHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 4788999999999999999999999999999999875311 0 0112233456678889999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+ .++++|+++|++++++||+++||||++
T Consensus 105 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~-~~a~~l~l~g~~~~a~eA~~~Glv~~v 183 (261)
T PRK08138 105 VNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGK-FKAMRMALTGCMVPAPEALAIGLVSEV 183 (261)
T ss_pred EccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCH-HHHHHHHHcCCCCCHHHHHHCCCCcEe
Confidence 9999999999999999999999999999999999999999999999999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhcccccccccc
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHD 233 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 233 (275)
+|+ +++.+++.+++++++..||.+++.+|+.++.....++++.+..+...+...+.++++++++..+..+|+
T Consensus 184 v~~-~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr~ 255 (261)
T PRK08138 184 VED-EQTLPRALELAREIARMPPLALAQIKEVVLAGADAPLDAALALERKAFQLLFDSEDQKEGMDAFLEKRK 255 (261)
T ss_pred cCc-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCC
Confidence 998 889999999999999999999999999999888888999998888888888899999999999987664
No 22
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-45 Score=324.89 Aligned_cols=224 Identities=25% Similarity=0.358 Sum_probs=200.4
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
||.++++++++|++||+|||+|.|++||+|+|++++...... . ......++..+++++.++.++||||||+
T Consensus 34 ~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~l~~~~kpvIAa 104 (260)
T PRK07511 34 AGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAK-----P----PSVQAASIDGLHDWIRAIRAFPKPVIAA 104 (260)
T ss_pred HHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccc-----c----chhHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 578899999999999999999999999999999987532110 0 0112234456677888999999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+ .++++|++||++++++||+++||||++
T Consensus 105 v~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~-~~a~~l~ltg~~~~a~eA~~~Glv~~v 183 (260)
T PRK07511 105 VEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPR-QLATELLLEGKPISAERLHALGVVNRL 183 (260)
T ss_pred ECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCH-HHHHHHHHhCCCCCHHHHHHcCCccEe
Confidence 9999999999999999999999999999999999999999999999999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccccccCC
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHDCP 235 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~sp 235 (275)
|++ +++.+++.++++++++.+|.++..+|+.++.....++.+.+..+...+...+.++++++++..+..+|+.+
T Consensus 184 v~~-~~~~~~a~~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r~~~ 257 (260)
T PRK07511 184 AEP-GQALAEALALADQLAAGSPNALARIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKRAPD 257 (260)
T ss_pred eCc-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccCCCC
Confidence 997 88999999999999999999999999999998888899999999888888889999999999998877543
No 23
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-45 Score=324.60 Aligned_cols=221 Identities=27% Similarity=0.303 Sum_probs=192.3
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
+|.++++++++|++|++|||+|.|++||+|+|++++..... ... ....... ...+...+.++||||||+
T Consensus 30 ~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~-----~~~---~~~~~~~---~~~~~~~l~~~~kPvIAa 98 (255)
T PRK06563 30 DLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLA-----AGG---FPFPEGG---IDPWGTVGRRLSKPLVVA 98 (255)
T ss_pred HHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccc-----cch---hhhhhhh---hHHHHHHHhcCCCCEEEE
Confidence 47889999999999999999999999999999998753111 000 0000111 112233578899999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|+ .+++++++||++++++||+++||||++
T Consensus 99 v~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~-~~a~~l~ltg~~~~a~eA~~~Glv~~v 177 (255)
T PRK06563 99 VQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGW-GNAMRYLLTGDEFDAQEALRLGLVQEV 177 (255)
T ss_pred EcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhH-HHHHHHHHcCCCcCHHHHHHcCCCcEe
Confidence 9999999999999999999999999999999999999999999999999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccccccC
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHDC 234 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~s 234 (275)
+|+ +++.+++.++++++++.||.+++.+|+.++.....++.+.++.+.......+.++|++|++..+..+|+.
T Consensus 178 v~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p 250 (255)
T PRK06563 178 VPP-GEQLERAIELAERIARAAPLGVQATLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQAFLERRPA 250 (255)
T ss_pred eCH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCC
Confidence 997 8999999999999999999999999999998888889999888877777788899999999999887643
No 24
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.9e-45 Score=327.36 Aligned_cols=225 Identities=26% Similarity=0.402 Sum_probs=198.9
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
||.++|++++.|+++++|||+|.|++||+|+|++++...... .+ ......+...+++++..|.++||||||+
T Consensus 48 eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~l~~~~kPvIAa 119 (277)
T PRK08258 48 ELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTK----MD----MPELLAFTRMTGDLVKAMRACPQPIIAA 119 (277)
T ss_pred HHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccc----cC----hhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 578899999999999999999999999999999987431110 00 0112233444567788999999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCccc-CchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTA-DVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSK 159 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p-~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~ 159 (275)
|||+|+|||++|+++||+||++++++|++||+++|++| ++|++++|++++|+ .++++|+++|++++|+||+++||||+
T Consensus 120 V~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~-~~a~~l~ltg~~~~a~eA~~~Glv~~ 198 (277)
T PRK08258 120 VDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQ-GRASELLYTGRSMSAEEGERWGFFNR 198 (277)
T ss_pred ECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCH-HHHHHHHHcCCCCCHHHHHHcCCCcE
Confidence 99999999999999999999999999999999999995 78889999999995 89999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccccccCC
Q psy14406 160 LYDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHDCP 235 (275)
Q Consensus 160 vv~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~sp 235 (275)
++|+ +++.+++.+++++|+..||.+++.+|+.++.....++++.++.+.......+.++|++|++..+..+|+.+
T Consensus 199 vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~ 273 (277)
T PRK08258 199 LVEP-EELLAEAQALARRLAAGPTFAHGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKRKPV 273 (277)
T ss_pred ecCH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence 9997 88999999999999999999999999999998888899999998888888889999999999998877544
No 25
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-45 Score=324.28 Aligned_cols=223 Identities=26% Similarity=0.295 Sum_probs=197.9
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
+|.++|++++.|+++++|||+|.|++||+|+|++++...... .+ ......+.+.+++++.++.++||||||+
T Consensus 33 ~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~l~~~~kPvIaa 104 (255)
T PRK07260 33 EILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDE----DD----VQSLVKIAELVNEISFAIKQLPKPVIMC 104 (255)
T ss_pred HHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccc----cc----hhhHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 478899999999999999999999999999999987532110 00 0111223345567788999999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++|+.|++++|++++|+ .++++|+++|++++|+||+++||||++
T Consensus 105 v~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~-~~a~~l~l~g~~~sa~eA~~~Glv~~v 183 (255)
T PRK07260 105 VDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGL-NRATHLAMTGEALTAEKALEYGFVYRV 183 (255)
T ss_pred ecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCH-HHHHHHHHhCCccCHHHHHHcCCccee
Confidence 9999999999999999999999999999999999999999999999999996 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhcccccccccc
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHD 233 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 233 (275)
+|. +++.+.+.++++++++.+|.+++.+|+.++.....++++.+..+.......+.++++++++..+..+|+
T Consensus 184 v~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~ 255 (255)
T PRK07260 184 AES-EKLEKTCEQLLKKLRRGSSNSYAAIKSLVWESFFKGWEDYAKLELALQESLAFKEDFKEGVRAFSERRR 255 (255)
T ss_pred cCH-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence 997 899999999999999999999999999999988888999998888887888899999999998887663
No 26
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.6e-45 Score=324.24 Aligned_cols=222 Identities=23% Similarity=0.415 Sum_probs=198.0
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCC-CCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVIS 79 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G-~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia 79 (275)
+|.++|+++++|++|++|||+|.| ++||+|+|++++...... . .....+....+.++..+..+||||||
T Consensus 42 ~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~----~------~~~~~~~~~~~~~~~~i~~~~kPvIa 111 (269)
T PRK06127 42 ALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSD----A------EAVAAYEQAVEAAQAALADYAKPTIA 111 (269)
T ss_pred HHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccc----h------HHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 578899999999999999999999 899999999987532110 0 01122334455678889999999999
Q ss_pred EECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCccc
Q psy14406 80 AVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSK 159 (275)
Q Consensus 80 ~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~ 159 (275)
+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+ .++++|++||++++++||+++||||+
T Consensus 112 av~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~-~~a~~l~ltg~~~~a~eA~~~Glv~~ 190 (269)
T PRK06127 112 CIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGP-SAAKDLFYTARRFDAAEALRIGLVHR 190 (269)
T ss_pred EECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCH-HHHHHHHHcCCCCCHHHHHHcCCCCE
Confidence 99999999999999999999999999999999999999999999999999995 89999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccccccC
Q psy14406 160 LYDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHDC 234 (275)
Q Consensus 160 vv~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~s 234 (275)
+||+ +++.+++.+++++++..||.+++.+|+.++.....++++.++.+.......+.+++.++++.++..+|+.
T Consensus 191 vv~~-~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p 264 (269)
T PRK06127 191 VTAA-DDLETALADYAATIAGNAPLTLRAAKRAIAELLKDEPERDMAACQALVAACFDSEDYREGRAAFMEKRKP 264 (269)
T ss_pred eeCH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCC
Confidence 9997 8999999999999999999999999999999888889999888888878888999999999999887743
No 27
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4e-45 Score=322.85 Aligned_cols=223 Identities=27% Similarity=0.381 Sum_probs=195.0
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
+|.+++++++ |+++++|||+|.|++||+|+|++++...... .... ....+...+..++.++.++||||||+
T Consensus 35 ~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~--~~~~------~~~~~~~~~~~~~~~l~~~~kPvIaa 105 (262)
T PRK08140 35 ELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGG--AMPD------LGESIETFYNPLVRRLRALPLPVIAA 105 (262)
T ss_pred HHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccc--cchh------hHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 4788999999 9999999999999999999999987421100 0000 00111122345678899999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++|+.|++++|++++|+ .++++|+++|++++++||+++||||++
T Consensus 106 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~-~~a~~l~l~g~~~~a~eA~~~Glv~~v 184 (262)
T PRK08140 106 VNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGM-ARALGLALLGEKLSAEQAEQWGLIWRV 184 (262)
T ss_pred ECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCH-HHHHHHHHcCCCcCHHHHHHcCCccEe
Confidence 9999999999999999999999999999999999999999999999999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccccccC
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHDC 234 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~s 234 (275)
+|+ +++.+++.+++++|+..||.+++.+|+.++.....++++.++.+.......+.++++++++..+..+|+.
T Consensus 185 v~~-~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p 257 (262)
T PRK08140 185 VDD-AALADEAQQLAAHLATQPTRGLALIKQAMNASATNTLDAQLDLERDLQREAGRSADYAEGVSAFLEKRAP 257 (262)
T ss_pred eCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCC
Confidence 997 8899999999999999999999999999999888889999998888777788999999999999887643
No 28
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.3e-45 Score=321.23 Aligned_cols=217 Identities=31% Similarity=0.406 Sum_probs=190.4
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
+|.++|++++.|++|++|||+|.|++||+|+|++++..... .. ... ..++.++ ...+||||||+
T Consensus 34 ~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~-----~~------~~~---~~~~~~~--~~~~~kPvIaa 97 (254)
T PRK08252 34 GLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGER-----PS------IPG---RGFGGLT--ERPPRKPLIAA 97 (254)
T ss_pred HHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccc-----hh------hhH---HHHHHHH--HhcCCCCEEEE
Confidence 47889999999999999999999999999999998753110 00 000 1111222 14689999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+ .++++|+++|++++++||+++||||++
T Consensus 98 v~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~-~~a~~l~l~g~~~~a~eA~~~Glv~~v 176 (254)
T PRK08252 98 VEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPY-HIAMELALTGDMLTAERAHELGLVNRL 176 (254)
T ss_pred ECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCH-HHHHHHHHcCCccCHHHHHHcCCccee
Confidence 9999999999999999999999999999999999999999999999999996 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccccccCC
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHDCP 235 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~sp 235 (275)
+|+ +++.+++.+++++++..||.+++.+|+.++.....++++.++.+.......+.++++++++..+..+|+.+
T Consensus 177 v~~-~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~ 250 (254)
T PRK08252 177 TEP-GQALDAALELAERIAANGPLAVAASKRIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAFAEKRAPV 250 (254)
T ss_pred cCc-chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence 997 89999999999999999999999999999988877899998888777777889999999999998876544
No 29
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.3e-45 Score=322.68 Aligned_cols=223 Identities=29% Similarity=0.405 Sum_probs=192.9
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
+|.+++++++.|++||+|||+|.|++||+|+|++++....... .. . .......+++++.++.++||||||+
T Consensus 35 ~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~---~~-----~-~~~~~~~~~~~~~~l~~~~kPvIaa 105 (262)
T PRK05995 35 ELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYS---DD-----E-NRADARRLADMLRAIYRCPKPVIAR 105 (262)
T ss_pred HHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccC---ch-----h-hhhHHHHHHHHHHHHHcCCCCEEEE
Confidence 4788999999999999999999999999999999874321100 00 0 0111234567788899999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++|++|++ +|++++|+ .++++|+++|++++|+||+++||||++
T Consensus 106 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vg~-~~a~~l~l~g~~~~a~eA~~~Glv~~v 183 (262)
T PRK05995 106 VHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISP-YVIRAMGE-RAARRYFLTAERFDAAEALRLGLVHEV 183 (262)
T ss_pred ECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHH-HHHHHhCH-HHHHHHHHcCCccCHHHHHHcCCCCee
Confidence 9999999999999999999999999999999999999988775 58999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHH-HHHHHHHhhcccCCchHHhccccccccccCC
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEG-LNQVDKESKNGCDRRNCNKGVSPERMSHDCP 235 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~e~~~~~~~~~~sp 235 (275)
+|. +++.+++.++++++++.||.+++.+|+.++.....++++. ++.+.......+.++|+++++..+..+|+.+
T Consensus 184 v~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~~kr~p~ 258 (262)
T PRK05995 184 VPA-EALDAKVDELLAALVANSPQAVRAGKRLVRDVAGRPIDAALIADTASRIALIRATEEAREGVAAFLEKRKPA 258 (262)
T ss_pred cCH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence 997 8999999999999999999999999999998877788777 6766666666788999999999998877554
No 30
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.2e-45 Score=321.80 Aligned_cols=222 Identities=27% Similarity=0.361 Sum_probs=192.3
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
+|.++|++++.|++|++|||+|.|++||+|+|++++...... ........ ....+.. +.++..+||||||+
T Consensus 36 ~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~----~~~~~~~~----~~~~~~~-~~~~~~~~kpvIaa 106 (263)
T PRK07799 36 IMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPG----DSFKDGSY----DPSRIDA-LLKGRRLTKPLIAA 106 (263)
T ss_pred HHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhcccc----chhhhhhh----hhhHHHH-HHHHhcCCCCEEEE
Confidence 578899999999999999999999999999999987532110 00000000 0111222 23467899999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+ .++++|++||++++|+||+++||||++
T Consensus 107 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~-~~a~~l~ltg~~~~a~eA~~~Glv~~v 185 (263)
T PRK07799 107 VEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPY-TVACDLLLTGRHITAAEAKEIGLIGHV 185 (263)
T ss_pred ECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCH-HHHHHHHHcCCCCCHHHHHHcCCccEe
Confidence 9999999999999999999999999999999999999999999999999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhcccccccccc
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHD 233 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 233 (275)
||+ +++.+++.+++++++..||.+++.+|+.++.....++.+.++.+.......+.++++++++..+..+|+
T Consensus 186 v~~-~~l~~~a~~~a~~~~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~ 257 (263)
T PRK07799 186 VPD-GQALDKALELAELINANGPLAVQAILRTIRETEGMHENEAFKIDTKIGIPVFLSEDAKEGPRAFAEKRA 257 (263)
T ss_pred cCc-chHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCC
Confidence 998 889999999999999999999999999999888888999999888877778899999999999987653
No 31
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.1e-45 Score=320.86 Aligned_cols=222 Identities=24% Similarity=0.292 Sum_probs=192.1
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
||.++|+.++.|+++++|||+|.|++||+|+|++++..... .. .. ........++.++..+..+||||||+
T Consensus 36 ~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~--~~--~~-----~~~~~~~~~~~~~~~l~~~~kPvIaa 106 (262)
T PRK07468 36 ELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMT--AD--RA-----TRIEEARRLAMMLKALNDLPKPLIGR 106 (262)
T ss_pred HHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcc--cc--hh-----hHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 47788999999999999999999999999999998743110 00 00 00112234566788899999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++ +++|+ .++++|++||++++++||+++||||++
T Consensus 107 v~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~-~~vG~-~~a~~lll~g~~~~a~eA~~~Glv~~v 184 (262)
T PRK07468 107 IQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVV-ARMGE-ANARRVFMSARLFDAEEAVRLGLLSRV 184 (262)
T ss_pred ECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHH-hhccH-HHHHHHHHhCCccCHHHHHHcCCccee
Confidence 9999999999999999999999999999999999999999998755 56995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccccccC
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHDC 234 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~s 234 (275)
+|. +++.+.+.++++++++.+|.+++.+|+.++......+++.++.+.......+.++|+++++.++..+|+.
T Consensus 185 ~~~-~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~ 257 (262)
T PRK07468 185 VPA-ERLDAAVEAEVTPYLSCAPGAVAAAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKRAP 257 (262)
T ss_pred cCH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCC
Confidence 997 8899999999999999999999999999988766667888888877777788999999999999887743
No 32
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.4e-45 Score=320.77 Aligned_cols=220 Identities=22% Similarity=0.282 Sum_probs=197.0
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
||.++++++ .|+++++|||+|.|++||+|+|++++..... . .....+...+++++.++..+||||||+
T Consensus 37 ~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~------~-----~~~~~~~~~~~~~~~~l~~~~~pvIaa 104 (260)
T PRK07659 37 ELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSND------E-----SKFDGVMNTISEIVVTLYTMPKLTISA 104 (260)
T ss_pred HHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccC------c-----hhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 477889999 5899999999999999999999998753211 0 011234455677888999999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++|+.|++++|++++|+ .++++|++||++++|+||+++||||++
T Consensus 105 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~-~~a~~l~ltg~~~~a~eA~~~Glv~~v 183 (260)
T PRK07659 105 IHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGE-NKAKQIIWEGKKLSATEALDLGLIDEV 183 (260)
T ss_pred ecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCH-HHHHHHHHhCCccCHHHHHHcCChHHH
Confidence 9999999999999999999999999999999999999999999999999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccccccCC
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHDCP 235 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~sp 235 (275)
| + +++.+++.++++++++.||.+++.+|+.++.....++++.++.+.......+.+++++|++..+..+|+..
T Consensus 184 v-~-~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~ 256 (260)
T PRK07659 184 I-G-GDFQTAAKQKISEWLQKPLKAMIETKQIYCELNRSQLEQVLQLEKRAQYAMRQTADHKEGIRAFLEKRLPV 256 (260)
T ss_pred h-h-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCC
Confidence 9 6 78999999999999999999999999999988888899999998888888889999999999998877543
No 33
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.7e-45 Score=321.94 Aligned_cols=218 Identities=25% Similarity=0.362 Sum_probs=185.9
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
||.++|++++.|++|++|||+|.|++||+|+|++++.....+ . .....++..++.++..+..+||||||+
T Consensus 43 ~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~l~~~~kPvIAa 112 (268)
T PRK07327 43 ELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADD-----F-----EVRARVWREARDLVYNVINCDKPIVSA 112 (268)
T ss_pred HHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCc-----H-----HHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 478899999999999999999999999999999987532110 0 011123344567788899999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++|+.|++++|++++|+ .+++++++||++++|+||+++||||++
T Consensus 113 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~-~~a~~l~ltg~~~~a~eA~~~Glv~~v 191 (268)
T PRK07327 113 IHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGM-AKAKYYLLLCEPVSGEEAERIGLVSLA 191 (268)
T ss_pred EcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCH-HHHHHHHHcCCccCHHHHHHcCCccee
Confidence 9999999999999999999999999999999999999999999999999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcC---CHHHHHHHHHHHhhcccCCchHHhccccccccccC
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDH---AVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHDC 234 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~s 234 (275)
+|+ +++.+++.+++++|++.||.+++.+|+.++..... .++..+..+ ...+.++++++++..+..+|+.
T Consensus 192 v~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~----~~~~~~~d~~eg~~af~ekr~p 263 (268)
T PRK07327 192 VDD-DELLPKALEVAERLAAGSQTAIRWTKYALNNWLRMAGPTFDTSLALE----FMGFSGPDVREGLASLREKRAP 263 (268)
T ss_pred cCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhHHHHHHHH----HHHccChhHHHHHHHHHhcCCC
Confidence 997 89999999999999999999999999999875322 344444333 2356788999999988876643
No 34
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=8.5e-45 Score=320.56 Aligned_cols=220 Identities=28% Similarity=0.433 Sum_probs=191.8
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCC-CCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVIS 79 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G-~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia 79 (275)
+|.++|++++.|++|++|||+|.| ++||+|+|++++..... ... .+.......+.++..+||||||
T Consensus 33 ~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~-----~~~--------~~~~~~~~~~~~l~~~~kPvIa 99 (261)
T PRK03580 33 AMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEA-----PDA--------DFGPGGFAGLTEIFDLDKPVIA 99 (261)
T ss_pred HHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCc-----chh--------hhhhhhhHHHHHHHhCCCCEEE
Confidence 478899999999999999999999 79999999998753211 000 0111123346778899999999
Q ss_pred EECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCccc
Q psy14406 80 AVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSK 159 (275)
Q Consensus 80 ~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~ 159 (275)
+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+ .++++++++|++++|+||+++||||+
T Consensus 100 av~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~-~~a~~l~l~g~~~~a~eA~~~Glv~~ 178 (261)
T PRK03580 100 AVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPP-AIANEMVMTGRRMDAEEALRWGIVNR 178 (261)
T ss_pred EECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCH-HHHHHHHHhCCccCHHHHHHcCCCcE
Confidence 99999999999999999999999999999999999999999999999999996 89999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHH----HhhcccCCchHHhccccccccccCC
Q psy14406 160 LYDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDK----ESKNGCDRRNCNKGVSPERMSHDCP 235 (275)
Q Consensus 160 vv~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~e~~~~~~~~~~sp 235 (275)
++|. +++.+++.+++++|+..+|.+++.+|+.++.....++++.++.+.. .....+.++|+++++..+..+|+.+
T Consensus 179 vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr~~~ 257 (261)
T PRK03580 179 VVPQ-AELMDRARELAQQLVNSAPLAIAALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKRDPV 257 (261)
T ss_pred ecCH-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCCCCC
Confidence 9997 8999999999999999999999999999998888788888877653 4455678999999999998877544
No 35
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.9e-45 Score=321.67 Aligned_cols=226 Identities=28% Similarity=0.420 Sum_probs=196.8
Q ss_pred CHHHHHHHhhhCC-CceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Q psy14406 1 EIGECFDSLSENE-ECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVIS 79 (275)
Q Consensus 1 el~~~l~~~~~d~-~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia 79 (275)
||.++++.++.|+ ++++|||+|.|++||+|+|++++........ .. ......+...++.++.+|.++||||||
T Consensus 35 ~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~l~~~~kpvIa 108 (266)
T PRK05981 35 GLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESD--SG----GDAGAALETAYHPFLRRLRNLPCPIVT 108 (266)
T ss_pred HHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhccccccc--cc----chhHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 5788999998876 4999999999999999999998753211000 00 000112233456778899999999999
Q ss_pred EECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCccc
Q psy14406 80 AVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSK 159 (275)
Q Consensus 80 ~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~ 159 (275)
+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+ .++++|+++|++++++||+++||||+
T Consensus 109 av~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~-~~a~~l~l~g~~~~a~eA~~~Glv~~ 187 (266)
T PRK05981 109 AVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGK-ARAMELSLLGEKLPAETALQWGLVNR 187 (266)
T ss_pred EECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHH-HHHHHHHHhCCCcCHHHHHHcCCceE
Confidence 99999999999999999999999999999999999999999999999999995 89999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccccccC
Q psy14406 160 LYDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHDC 234 (275)
Q Consensus 160 vv~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~s 234 (275)
++|+ +++.+++.+++++++..||.+++.+|+.++.....++.+.++.+.......+.++|.+|++.++..+|+.
T Consensus 188 vv~~-~~~~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~ 261 (266)
T PRK05981 188 VVDD-AELMAEAMKLAHELANGPTVALGLIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKRPA 261 (266)
T ss_pred eeCH-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCC
Confidence 9997 8899999999999999999999999999998877789999998888888888999999999999887643
No 36
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.8e-45 Score=319.82 Aligned_cols=217 Identities=29% Similarity=0.403 Sum_probs=188.3
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCC-CCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVIS 79 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G-~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia 79 (275)
||.+++++++.|+++++|||+|.| ++||+|+|++++..... .. . ... .+..+ ..+.++||||||
T Consensus 35 ~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~-----~~--~---~~~----~~~~~-~~~~~~~kPvIa 99 (259)
T PRK06494 35 ELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGK-----RG--W---PES----GFGGL-TSRFDLDKPIIA 99 (259)
T ss_pred HHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCc-----ch--h---hhH----HHHHH-HHHhcCCCCEEE
Confidence 478899999999999999999999 79999999998743211 00 0 000 11122 234588999999
Q ss_pred EECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCccc
Q psy14406 80 AVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSK 159 (275)
Q Consensus 80 ~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~ 159 (275)
+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+ .++++|++||++++|+||+++||||+
T Consensus 100 av~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~-~~a~~lll~g~~~~a~eA~~~GLv~~ 178 (259)
T PRK06494 100 AVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGL-KRAMGMILTGRRVTAREGLELGFVNE 178 (259)
T ss_pred EECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCH-HHHHHHHHcCCcCCHHHHHHcCCCcE
Confidence 99999999999999999999999999999999999999999999999999995 89999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHH--HHHhhcccCCchHHhccccccccccC
Q psy14406 160 LYDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQV--DKESKNGCDRRNCNKGVSPERMSHDC 234 (275)
Q Consensus 160 vv~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~e~~~~~~~~~~s 234 (275)
++|+ +++.+++.+++++++..||.+++.+|+.++.....++++.++.+ .......+.++|+++++..+..+|+.
T Consensus 179 vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr~p 254 (259)
T PRK06494 179 VVPA-GELLAAAERWADDILACSPLSIRASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKRPP 254 (259)
T ss_pred ecCH-hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCC
Confidence 9997 89999999999999999999999999999988887898888887 34456677899999999999886643
No 37
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-44 Score=319.72 Aligned_cols=218 Identities=25% Similarity=0.382 Sum_probs=198.2
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
+|.+++++++.|+++++|||+|.|++||+|+|++++..... .. ..+...+++++.++.++|||+||+
T Consensus 36 ~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~-----~~--------~~~~~~~~~~~~~l~~~~kp~Iaa 102 (259)
T PRK06688 36 ALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPP-----KP--------PDELAPVNRFLRAIAALPKPVVAA 102 (259)
T ss_pred HHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCc-----ch--------HHHHHHHHHHHHHHHcCCCCEEEE
Confidence 47889999999999999999999999999999998754211 00 123445667888999999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++|||||++++++|++||+++|++|++|+++++++++|+ .++++++++|++++++||+++||||++
T Consensus 103 v~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~-~~a~~l~l~g~~~~a~eA~~~Glv~~v 181 (259)
T PRK06688 103 VNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGR-ARAAEMLLLGEPLSAEEALRIGLVNRV 181 (259)
T ss_pred ECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhH-HHHHHHHHhCCccCHHHHHHcCCccee
Confidence 9999999999999999999999999999999999999999999999999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhcccccccccc
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHD 233 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 233 (275)
+|+ +++.+++.+++++++..||.+++.+|+.++.....++++.+..+.......+.+++.++++..+..+|+
T Consensus 182 ~~~-~~l~~~a~~~a~~i~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~~ 253 (259)
T PRK06688 182 VPA-AELDAEADAQAAKLAAGPASALRYTKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEKRK 253 (259)
T ss_pred cCH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCC
Confidence 997 899999999999999999999999999999988889999999998888888899999999999888653
No 38
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.5e-45 Score=319.69 Aligned_cols=214 Identities=21% Similarity=0.306 Sum_probs=190.8
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
+|.++|+.+++|++|++|||+|.|++||+|+|++++.....+ . ..+.+..+++++..+.++||||||+
T Consensus 34 ~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~-----~-------~~~~~~~~~~~~~~l~~~~kPvIaa 101 (249)
T PRK05870 34 QLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGR-----P-------AEDGLRRIYDGFLAVASCPLPTIAA 101 (249)
T ss_pred HHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhccccc-----c-------hHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 478899999999999999999999999999999987532110 0 0112334455677889999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|+ .+++++++||++++++||+++||||++
T Consensus 102 v~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~-~~a~~l~ltg~~~~a~eA~~~Glv~~v 180 (249)
T PRK05870 102 VNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGP-QVARAALLFGMRFDAEAAVRHGLALMV 180 (249)
T ss_pred ECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCH-HHHHHHHHhCCccCHHHHHHcCCHHHH
Confidence 9999999999999999999999999999999999999999999999999996 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhc-CCHHHHHHHHHHHhhcccCCchHHhccccccc
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRD-HAVEEGLNQVDKESKNGCDRRNCNKGVSPERM 230 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~ 230 (275)
+ +++.+++.+++++++..||.+++.+|+.++.... .++++.++.+.......+.++|+++++.+++.
T Consensus 181 v---~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~ 248 (249)
T PRK05870 181 A---DDPVAAALELAAGPAAAPRELVLATKASMRATASLAQHAAAVEFELGPQAASVQSPEFAARLAAAQR 248 (249)
T ss_pred H---hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhc
Confidence 9 3688999999999999999999999999998877 78999998888888888899999999987764
No 39
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-44 Score=317.59 Aligned_cols=217 Identities=27% Similarity=0.369 Sum_probs=190.8
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
||.+++++++.|++||+|||+|.|++||+|+|++++..... . .........+++++..+.++|||+||+
T Consensus 32 ~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~------~-----~~~~~~~~~~~~~~~~i~~~~kPvIAa 100 (249)
T PRK07938 32 ALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPG------F-----TALIDANRGCFAAFRAVYECAVPVIAA 100 (249)
T ss_pred HHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccc------h-----hHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 57889999999999999999999999999999998642110 0 011122234456778899999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++ |++++|++++|+ .++++|+++|++++|+||+++||||++
T Consensus 101 v~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~-~~a~~l~ltg~~~~a~eA~~~Glv~~v 176 (249)
T PRK07938 101 VHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQ-HLMRALFFTAATITAAELHHFGSVEEV 176 (249)
T ss_pred EcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCH-HHHHHHHHhCCcCCHHHHHHCCCccEE
Confidence 9999999999999999999999999999999999986 456789999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhcccccccccc
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHD 233 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 233 (275)
||+ +++.+++.+++++|+..||.+++.+|+.++.....++++.++.+.......+.++|++|++.++..+|+
T Consensus 177 v~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~ 248 (249)
T PRK07938 177 VPR-DQLDEAALEVARKIAAKDTRVIRAAKEALNGIDPQDVERSYRWEQGFTFELNLAGVSDEHRDAFVEKRK 248 (249)
T ss_pred eCH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCC
Confidence 997 899999999999999999999999999999887778888888887777778899999999999988763
No 40
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.2e-45 Score=318.61 Aligned_cols=214 Identities=20% Similarity=0.314 Sum_probs=188.2
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
+|.++|+.+++|+++++|||+|.|++||+|+|++++..... .. ..+...+++++.++.++||||||+
T Consensus 37 ~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~-----~~--------~~~~~~~~~~~~~l~~~~kPvIAa 103 (251)
T PRK06023 37 TMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAM-----GG--------TSFGSEILDFLIALAEAEKPIVSG 103 (251)
T ss_pred HHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccc-----cc--------hhhHHHHHHHHHHHHhCCCCEEEE
Confidence 47889999999999999999999999999999998753211 00 011223456778899999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++|||||++++++|++||+++|++|++|+++++++++|+ .++++++++|++++++||+++||||++
T Consensus 104 v~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~-~~a~~l~l~g~~~~a~eA~~~Glv~~v 182 (251)
T PRK06023 104 VDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGH-QRAFALLALGEGFSAEAAQEAGLIWKI 182 (251)
T ss_pred eCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhH-HHHHHHHHhCCCCCHHHHHHcCCccee
Confidence 9999999999999999999999999999999999999999999999999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccc
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERM 230 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~ 230 (275)
||. +++.+++.+++++|+..||.+++.+|+.++... ..+++.+..+.......+.++++++++..+..
T Consensus 183 v~~-~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~~~~~~e~~~af~e 250 (251)
T PRK06023 183 VDE-EAVEAETLKAAEELAAKPPQALQIARDLMRGPR-EDILARIDEEAKHFAARLKSAEARAAFEAFMR 250 (251)
T ss_pred eCH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHhc
Confidence 997 899999999999999999999999999998764 46777777776666777889999999877653
No 41
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=8.1e-45 Score=321.26 Aligned_cols=223 Identities=24% Similarity=0.314 Sum_probs=190.3
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
||.++|+.++.|++||+|||+|.|++||+|+|++++..... .+.... ......+++++..+.++||||||+
T Consensus 37 el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~-----~~~~~~----~~~~~~~~~~~~~l~~~~kPvIaa 107 (265)
T PRK05674 37 ELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSAD-----LDYNTN----LDDARELAELMYNLYRLKIPTLAV 107 (265)
T ss_pred HHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhccc-----ccchhh----hHHHHHHHHHHHHHHcCCCCEEEE
Confidence 57889999999999999999999999999999998743111 000000 111233456788899999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++|++|++ ++++++|. .+++++++||++++|+||+++||||++
T Consensus 108 V~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~-~~a~~l~ltg~~~~a~eA~~~Glv~~v 185 (265)
T PRK05674 108 VQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGE-RAARRYALTAERFDGRRARELGLLAES 185 (265)
T ss_pred EcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCH-HHHHHHHHhCcccCHHHHHHCCCccee
Confidence 9999999999999999999999999999999999999987765 58999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHH-HHHhhcccCCchHHhccccccccccCC
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQV-DKESKNGCDRRNCNKGVSPERMSHDCP 235 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~e~~~~~~~~~~sp 235 (275)
+|. +++.+++.+++++++..||.+++.+|+.++.....++++.+..+ .......+.+++.++++..+..+|+.+
T Consensus 186 v~~-~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~~kr~p~ 260 (265)
T PRK05674 186 YPA-AELEAQVEAWIANLLLNSPQALRASKDLLREVGDGELSPALRRYCENAIARIRVSAEGQEGLRAFLEKRTPA 260 (265)
T ss_pred cCH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCCCC
Confidence 997 89999999999999999999999999999998887887777643 344555678999999999998876543
No 42
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=1.4e-44 Score=319.74 Aligned_cols=215 Identities=26% Similarity=0.399 Sum_probs=189.0
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
+|.++|++++.|++|++|||+|.|++||+|+|++++..... .. .. ...++++..+..+||||||+
T Consensus 41 ~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-----~~-------~~---~~~~~~~~~i~~~~kPvIaa 105 (265)
T PLN02888 41 ELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFK-----GD-------VK---DVETDPVAQMERCRKPIIGA 105 (265)
T ss_pred HHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhcc-----ch-------hh---HHHHHHHHHHHhCCCCEEEE
Confidence 57889999999999999999999999999999997642111 00 00 11234566788999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|+ .++++|++||++++++||+++||||++
T Consensus 106 v~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~-~~a~~l~ltg~~~~a~eA~~~Glv~~v 184 (265)
T PLN02888 106 INGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGA-NRAREVSLTAMPLTAETAERWGLVNHV 184 (265)
T ss_pred ECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCH-HHHHHHHHhCCccCHHHHHHcCCccEe
Confidence 9999999999999999999999999999999999999999999999999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhccc--CCchHHhccccccccc
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGC--DRRNCNKGVSPERMSH 232 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~e~~~~~~~~~ 232 (275)
|++ +++.+++.+++++++..+|.+++.+|+.++.....++++.+..+.......+ .++++.+++.+++.+|
T Consensus 185 v~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~ekr 257 (265)
T PLN02888 185 VEE-SELLKKAREVAEAIIKNNQGMVLRYKSVINDGLKLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFIAGR 257 (265)
T ss_pred eCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcC
Confidence 997 8899999999999999999999999999998888788888888766554443 5889999999988765
No 43
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-44 Score=321.40 Aligned_cols=227 Identities=31% Similarity=0.415 Sum_probs=190.0
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
||.++|++++.|++|++|||+|.|++||+|+|++++...... ..... ..........++.++..+..+||||||+
T Consensus 41 ~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~l~~~~kPvIaa 115 (276)
T PRK05864 41 PLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHV----EGLTR-PTYALRSMELLDDVILALRRLHQPVIAA 115 (276)
T ss_pred HHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhccccc----ccccc-hhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 478899999999999999999999999999999986421100 00000 0001122344566788899999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCccc-CchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTA-DVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSK 159 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p-~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~ 159 (275)
|||+|+|||++|+++||+||++++++|++||+++|++| +.|++++|++++|+ .++++|+++|++++|+||+++||||+
T Consensus 116 v~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~-~~A~~l~l~g~~~~a~eA~~~Glv~~ 194 (276)
T PRK05864 116 VNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIGS-SRAFEIMLTGRDVDAEEAERIGLVSR 194 (276)
T ss_pred ECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhCH-HHHHHHHHcCCccCHHHHHHcCCcce
Confidence 99999999999999999999999999999999999997 78889999999995 89999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcC-CHHHHHHHHHHHh-hcccCCchHHhccccccccccC
Q psy14406 160 LYDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDH-AVEEGLNQVDKES-KNGCDRRNCNKGVSPERMSHDC 234 (275)
Q Consensus 160 vv~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~l~~~~~~~-~~~~~~~~~~e~~~~~~~~~~s 234 (275)
++|+ +++.+++.+++++|+..||.+++.+|+.++..... ++++.+..+.... ...+.++|+++++.++..+|+.
T Consensus 195 vv~~-~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~~kr~p 270 (276)
T PRK05864 195 QVPD-EQLLDTCYAIAARMAGFSRPGIELTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLTANFEEAVAARAEKRPP 270 (276)
T ss_pred eeCH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCC
Confidence 9997 89999999999999999999999999999887664 6777776664322 1246789999999998887643
No 44
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-44 Score=321.10 Aligned_cols=228 Identities=26% Similarity=0.385 Sum_probs=195.4
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCcEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARK-SKILRKLITTYQKSISSLERCPKPVIS 79 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~kP~Ia 79 (275)
||.++|++++.|+++++|||+|.|++||+|+|++++........ ..... ..........+++++..+.++||||||
T Consensus 37 ~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 113 (272)
T PRK06210 37 EVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDG---RRDTDVRPFVGNRRPDYQTRYHFLTALRKPVIA 113 (272)
T ss_pred HHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccc---cccccchhhhhhhhhhHHHHHHHHHhCCCCEEE
Confidence 57889999999999999999999999999999998754211000 00000 000011112245567789999999999
Q ss_pred EECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCccc
Q psy14406 80 AVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSK 159 (275)
Q Consensus 80 ~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~ 159 (275)
+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+ .++++|++||++++|+||+++||||+
T Consensus 114 av~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~-~~a~~l~ltg~~~~a~eA~~~Glv~~ 192 (272)
T PRK06210 114 AINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVGH-ANALDLLLSARTFYAEEALRLGLVNR 192 (272)
T ss_pred EECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHhhhCH-HHHHHHHHcCCccCHHHHHHcCCcce
Confidence 99999999999999999999999999999999999999999999999999995 89999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhcccccccccc
Q psy14406 160 LYDDKESLLAGAIELGELIASK-SPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHD 233 (275)
Q Consensus 160 vv~~~~~l~~~a~~~a~~la~~-~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 233 (275)
++|+ +++.+++.+++++++.. +|.++..+|+.++.....++++.++.+.......+.+++++|++.++..+|+
T Consensus 193 vv~~-~~l~~~a~~~a~~i~~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~ 266 (272)
T PRK06210 193 VVPP-DELMERTLAYAEDLARNVSPASMAVIKRQLYEDAFQTLAEATARANREMHESLQRPDFIEGVASFLEKRP 266 (272)
T ss_pred ecCH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCC
Confidence 9997 88999999999999985 9999999999999988888999998888777778899999999999988764
No 45
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=1.4e-44 Score=318.50 Aligned_cols=217 Identities=36% Similarity=0.543 Sum_probs=195.2
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
+|.++|+.++.|++||+|||+|.|++||+|+||+.+.. .. +. .....++...+.++.++.++||||||+
T Consensus 36 ~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~-~~------~~----~~~~~~~~~~~~~~~~l~~~~kPvIAa 104 (257)
T COG1024 36 ELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLS-PE------DG----NAAENLMQPGQDLLRALADLPKPVIAA 104 (257)
T ss_pred HHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhc-cc------ch----hHHHHHHhHHHHHHHHHHhCCCCEEEE
Confidence 57889999999999999999999999999999999864 11 00 011245666778899999999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+|||+++++|++||+++|++|+.|++++|+|++|+ .++++|++||++++++||+++|||+++
T Consensus 105 v~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~-~~a~~l~ltg~~~~a~eA~~~Glv~~v 183 (257)
T COG1024 105 VNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGR-GRAKELLLTGEPISAAEALELGLVDEV 183 (257)
T ss_pred EcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCH-HHHHHHHHcCCcCCHHHHHHcCCcCee
Confidence 9999999999999999999999999999999999999987999999999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccc
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERM 230 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~ 230 (275)
++..+++.+.+.+++++++. +|.++..+|+.++......+++.+..+.......+.++|+.|++..+..
T Consensus 184 v~~~~~l~~~a~~~a~~~a~-~~~a~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~~ 252 (257)
T COG1024 184 VPDAEELLERALELARRLAA-PPLALAATKRLVRAALEADLAEALEAEALAFARLFSSEDFREGVRAFLE 252 (257)
T ss_pred eCCHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcChhHHHHHHHHHc
Confidence 98647999999999999998 9999999999999987767888888887777767789999999998888
No 46
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.1e-44 Score=317.25 Aligned_cols=225 Identities=30% Similarity=0.390 Sum_probs=194.3
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
+|.+++++++.|++|++|||+|.|++||+|+|++++..... ................++.++..+.++||||||+
T Consensus 34 ~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvIaa 108 (262)
T PRK07509 34 ELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPG-----NAVKLLFKRLPGNANLAQRVSLGWRRLPVPVIAA 108 (262)
T ss_pred HHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccc-----hhhhhHhhhhHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 47889999999999999999999999999999998753211 0000001111222234456677888999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+ .+++++++||++++|+||+++||||++
T Consensus 109 v~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~-~~a~~l~ltg~~~~a~eA~~~Glv~~v 187 (262)
T PRK07509 109 LEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRK-DVARELTYTARVFSAEEALELGLVTHV 187 (262)
T ss_pred ECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCH-HHHHHHHHcCCCcCHHHHHHcCChhhh
Confidence 9999999999999999999999999999999999999999999999999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccccccC
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHDC 234 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~s 234 (275)
+++ +.+++.+++++++..||.++..+|+.++.....++++.+..+.......+.++|+++++..+..+|+.
T Consensus 188 v~~---~~~~a~~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p 258 (262)
T PRK07509 188 SDD---PLAAALALAREIAQRSPDAIAAAKRLINRSWTASVRALLARESVEQIRLLLGKNQKIAVKAQMKKRAP 258 (262)
T ss_pred hch---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCC
Confidence 963 67899999999999999999999999999888888888888877777788999999999999887643
No 47
>KOG1681|consensus
Probab=100.00 E-value=7e-46 Score=308.29 Aligned_cols=235 Identities=55% Similarity=0.861 Sum_probs=217.7
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
|+.++|+.++.||++|+|||+|+|++||+|+|+..+...........+..+....+++++..+++.+..|.++|||+|++
T Consensus 53 E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaa 132 (292)
T KOG1681|consen 53 EFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQPEGDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAA 132 (292)
T ss_pred HHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhccccccchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHH
Confidence 57789999999999999999999999999999877654322122234666777889999999999999999999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|+|+.|..+||+|+|+++|.|..-|+.+|+..|+|...+||+.+|.++.++++.+|++.++|.||++.|||.++
T Consensus 133 vHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrv 212 (292)
T KOG1681|consen 133 VHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLNRLPKVVGNQSLARELAFTARKFSADEALDSGLVSRV 212 (292)
T ss_pred HHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHhhhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhh
Confidence 99999999999999999999999999999999999999999999999999977999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccccccCC
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHDCP 235 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~sp 235 (275)
+|+.+++...+..+|+.|+.++|.++..+|..++.+.+++.++.+.+...|++..+.++|..+++.+.++.++.+
T Consensus 213 f~dk~~ll~~~l~mA~~Ia~KSpvaVqgTK~~L~ysrehsv~~sLnyvatwNms~L~s~Dl~~av~a~m~k~k~~ 287 (292)
T KOG1681|consen 213 FPDKEELLNGALPMAELIASKSPVAVQGTKENLLYSREHSVEESLNYVATWNMSMLLSDDLVKAVMAQMEKLKTV 287 (292)
T ss_pred cCCHHHHHhhhHHHHHHhccCCceeeechHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999998888866444
No 48
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.9e-44 Score=317.05 Aligned_cols=218 Identities=24% Similarity=0.278 Sum_probs=187.3
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
||.++|++++.|+++++|||+|.|++||+|+|++++..... ... . .... ..+...+.++||||||+
T Consensus 34 ~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~-----~~~----~--~~~~---~~~~~~~~~~~kPvIaa 99 (254)
T PRK08259 34 ALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRG-----NRL----H--PSGD---GPMGPSRMRLSKPVIAA 99 (254)
T ss_pred HHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccc-----hhh----h--hhhc---chhhhHHhcCCCCEEEE
Confidence 57889999999999999999999999999999998753211 000 0 0000 01112234789999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++|||||++++++|++||+++|++|+.|++++|++++|+ .++++++++|++++|+||+++||||++
T Consensus 100 v~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~-~~a~~lll~g~~~~a~eA~~~Glv~~v 178 (254)
T PRK08259 100 VSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGH-SRAMDLILTGRPVDADEALAIGLANRV 178 (254)
T ss_pred ECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCH-HHHHHHHHcCCccCHHHHHHcCCCCEe
Confidence 9999999999999999999999999999999999999999999999999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccccccCC
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHDCP 235 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~sp 235 (275)
||. +++.+++.+++++|++.||.+++.+|+.++.....++++.+..+.......+. +|++|++.++..+++-|
T Consensus 179 v~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~-~d~~egi~af~~~~~~~ 251 (254)
T PRK08259 179 VPK-GQARAAAEELAAELAAFPQTCLRADRLSALEQWGLPEEAALANEFAHGLAVLA-AEALEGAARFAAGAGRH 251 (254)
T ss_pred eCh-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhhccc
Confidence 997 89999999999999999999999999999988777898888877665444555 99999999998877644
No 49
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=2.8e-44 Score=316.89 Aligned_cols=220 Identities=25% Similarity=0.307 Sum_probs=186.2
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCC-CCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVIS 79 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G-~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia 79 (275)
||.++++.++.|+++++|||||.| ++||+|+|++++..... . ... . ... ..+..++..+.++||||||
T Consensus 34 el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~--~--~~~-~----~~~--~~~~~~~~~l~~~~kPvIA 102 (259)
T TIGR01929 34 EIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGY--I--DDS-G----VHR--LNVLDVQRQIRTCPKPVIA 102 (259)
T ss_pred HHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccc--c--chh-h----HHH--HHHHHHHHHHHhCCCCEEE
Confidence 578899999999999999999999 89999999987632110 0 000 0 000 1234567788999999999
Q ss_pred EECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCccc
Q psy14406 80 AVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSK 159 (275)
Q Consensus 80 ~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~ 159 (275)
+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+ .++++|+++|++++|+||+++||||+
T Consensus 103 av~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~-~~a~~l~l~g~~~~a~eA~~~Glv~~ 181 (259)
T TIGR01929 103 MVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQ-KKAREIWFLCRQYDAEQALDMGLVNT 181 (259)
T ss_pred EEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHH-HHHHHHHHhCCccCHHHHHHcCCccc
Confidence 99999999999999999999999999999999999999999999999999996 89999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccccccC
Q psy14406 160 LYDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHDC 234 (275)
Q Consensus 160 vv~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~s 234 (275)
+||+ +++.+++.+++++|+..||.+++.+|+.++..... .......+.......+.++|+++++..+..+|+.
T Consensus 182 vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p 254 (259)
T TIGR01929 182 VVPL-ADLEKETVRWCREILQKSPMAIRMLKAALNADCDG-QAGLQELAGNATMLFYMTEEGQEGRNAFLEKRQP 254 (259)
T ss_pred ccCH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHhcCccHHHHHHHHhccCCC
Confidence 9997 89999999999999999999999999999876543 3333444444555677899999999999887643
No 50
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=2.6e-44 Score=319.77 Aligned_cols=221 Identities=19% Similarity=0.251 Sum_probs=193.8
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCC--CCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAG--KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVI 78 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G--~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~I 78 (275)
||.++|++++.|+++++|||+|.| ++||+|+|++++..... .. .....+....+.++.+|.++|||||
T Consensus 42 eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~------~~----~~~~~~~~~~~~~~~~l~~~~kPvI 111 (278)
T PLN03214 42 SLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKT------SA----ARYAEFWLTQTTFLVRLLRSRLATV 111 (278)
T ss_pred HHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhcccc------ch----HHHHHHHHHHHHHHHHHHcCCCCEE
Confidence 578999999999999999999998 69999999998742110 00 0111222333556788999999999
Q ss_pred EEECchhchHHHHHHHHCCEEEEeCCceEeccccccCc-ccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCc
Q psy14406 79 SAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGL-TADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLV 157 (275)
Q Consensus 79 a~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~-~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv 157 (275)
|+|||+|+|||++|+++|||||++++++|++||+++|+ +|+.+++++|++++|+ .++++|++||++++++||+++|||
T Consensus 112 AaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~-~~a~~llltg~~~~a~eA~~~Glv 190 (278)
T PLN03214 112 CAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDR-KVAESLLLRGRLVRPAEAKQLGLI 190 (278)
T ss_pred EEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCH-HHHHHHHHcCCccCHHHHHHcCCC
Confidence 99999999999999999999999999999999999999 5999999999999995 899999999999999999999999
Q ss_pred ccccCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhcccccccccc
Q psy14406 158 SKLYDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHD 233 (275)
Q Consensus 158 ~~vv~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 233 (275)
|++||. +++.+.+.+++++|+..+|.+++.+|+.++.....++++.++.+.......+.++|+++++.+++.+.+
T Consensus 191 ~~vv~~-~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~aflek~~ 265 (278)
T PLN03214 191 DEVVPA-AALMEAAASAMERALKLPSAARAATKALLREEFSAAWEAYYEEEAKGGWKMLSEPSIIKALGGVMERLS 265 (278)
T ss_pred cEecCh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 999997 899999999999999999999999999999887778888888888777778899999999988877543
No 51
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=2.1e-44 Score=315.23 Aligned_cols=216 Identities=34% Similarity=0.532 Sum_probs=199.7
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
||.++|+.++.|+++++||++|.|++||+|+|++++... .......+...++.++.++..+||||||+
T Consensus 29 ~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~------------~~~~~~~~~~~~~~l~~~l~~~~kp~Iaa 96 (245)
T PF00378_consen 29 ELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNS------------DEEEAREFFRRFQELLSRLANFPKPTIAA 96 (245)
T ss_dssp HHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHH------------HHHHHHHHHHHHHHHHHHHHHSSSEEEEE
T ss_pred HHHHHHHHHHhcCCccEEEEeecccccccccchhhhhcc------------ccccccccchhhccccccchhhhhheeec
Confidence 478899999999999999999999999999999998643 11234566778889999999999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|+ ..+++++++|++++|+||+++||||++
T Consensus 97 v~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~-~~a~~l~l~g~~~~a~eA~~~Glv~~v 175 (245)
T PF00378_consen 97 VNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGP-SRARELLLTGEPISAEEALELGLVDEV 175 (245)
T ss_dssp ESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHH-HHHHHHHHHTCEEEHHHHHHTTSSSEE
T ss_pred ccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeec-ccccccccccccchhHHHHhhcceeEE
Confidence 9999999999999999999999999999999999999999999999999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccc
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERM 230 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~ 230 (275)
+|+ +++.+.+.+++++++..|+.+++.+|+.++......+++.+..+.......+.++|++|++..+..
T Consensus 176 ~~~-~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~e 244 (245)
T PF00378_consen 176 VPD-EELDEEALELAKRLAAKPPSALRATKKALNRALEQSLEEALEFEQDLFAECFKSEDFQEGIAAFLE 244 (245)
T ss_dssp ESG-GGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred cCc-hhhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHhC
Confidence 998 789999999999999999999999999999988888999999999888889999999999988765
No 52
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.5e-44 Score=314.71 Aligned_cols=219 Identities=29% Similarity=0.464 Sum_probs=192.9
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
+|.++++.++.|+++|+|||+|.|++||+|+|++++...... .+ ....+...+++++.++.++|||+||+
T Consensus 34 ~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~----~~------~~~~~~~~~~~~~~~l~~~~kPvIAa 103 (257)
T PRK06495 34 ELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKG----PG------DLRAHNRRTRECFHAIRECAKPVIAA 103 (257)
T ss_pred HHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCC----ch------hHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 578899999999999999999999999999999987432110 00 11222344566788899999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++ |+++++++++|+ .++++|+++|++++|+||+++||||++
T Consensus 104 v~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~-~~a~~lll~g~~~~a~eA~~~GLv~~v 179 (257)
T PRK06495 104 VNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGH-SLTRRMMLTGYRVPAAELYRRGVIEAC 179 (257)
T ss_pred ECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCH-HHHHHHHHcCCeeCHHHHHHcCCccee
Confidence 9999999999999999999999999999999999996 456789999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccccccC
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHDC 234 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~s 234 (275)
+|+ +++.+.+.+++++++..||.+++.+|+.++.....++++.++.+.......+.++|+++++..+..+|+.
T Consensus 180 v~~-~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr~p 252 (257)
T PRK06495 180 LPP-EELMPEAMEIAREIASKSPLATRLAKDALNTIENMSLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKRPP 252 (257)
T ss_pred cCH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhccCCC
Confidence 997 8999999999999999999999999999999888889999988888777788999999999999887643
No 53
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.3e-44 Score=314.72 Aligned_cols=217 Identities=29% Similarity=0.457 Sum_probs=187.4
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCC-CCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVIS 79 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G-~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia 79 (275)
+|.+++++++.|++|++|||+|.| ++||+|+|++++..... .+ ....+...++.++.++.++||||||
T Consensus 39 ~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~-----~~------~~~~~~~~~~~~~~~l~~~~kPvIa 107 (262)
T PRK06144 39 GLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFST-----AE------DAVAYERRIDRVLGALEQLRVPTIA 107 (262)
T ss_pred HHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccc-----hh------HHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 477899999999999999999999 79999999998753211 00 0112233456678889999999999
Q ss_pred EECchhchHHHHHHHHCCEEEEeCCceEeccccc-cCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcc
Q psy14406 80 AVHGACIGGGMSLITAADIRYATKDAWFTLKEVD-IGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVS 158 (275)
Q Consensus 80 ~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~-~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~ 158 (275)
+|||+|+|||++|+++||+||++++++|++||++ +|++|++|++++|++++|+ .++++++++|++++|+||+++||||
T Consensus 108 av~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~-~~a~~l~l~g~~~~a~eA~~~Glv~ 186 (262)
T PRK06144 108 AIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGA-ARVKDMLFTARLLEAEEALAAGLVN 186 (262)
T ss_pred EECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCH-HHHHHHHHcCCCcCHHHHHHcCCcC
Confidence 9999999999999999999999999999999996 9999999999999999995 8999999999999999999999999
Q ss_pred cccCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccccccC
Q psy14406 159 KLYDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHDC 234 (275)
Q Consensus 159 ~vv~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~s 234 (275)
+++|+ +++.+++.+++++|+..||.+++.+|+.++......+... .......+.++++++++..+..+|+.
T Consensus 187 ~vv~~-~~l~~~a~~~a~~i~~~~~~a~~~~K~~l~~~~~~~l~~~----~~~~~~~~~~~~~~e~~~af~~kr~p 257 (262)
T PRK06144 187 EVVED-AALDARADALAELLAAHAPLTLRATKEALRRLRREGLPDG----DDLIRMCYMSEDFREGVEAFLEKRPP 257 (262)
T ss_pred eecCH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcCHHHH----HHHHHHHhcChHHHHHHHHHhcCCCC
Confidence 99997 8999999999999999999999999999998765555443 23444567899999999999886643
No 54
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=9.3e-44 Score=312.08 Aligned_cols=215 Identities=19% Similarity=0.337 Sum_probs=183.6
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
||.+++++++.||++++|||+|.|++||+|+|++++.. . . ...+...++.++..+..+||||||+
T Consensus 31 ~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~--~------~-------~~~~~~~~~~~~~~l~~~~kPvIaa 95 (251)
T TIGR03189 31 ALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMP--D------Q-------CAAMLASLHKLVIAMLDSPVPILVA 95 (251)
T ss_pred HHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCc--h------h-------HHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 57889999999999999999999999999999987531 0 0 0112334456788899999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++|++ ++++|++++|+ .++++|++||++++|+||+++||||++
T Consensus 96 v~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~-~~~~l~~~vg~-~~a~~l~ltg~~~~a~eA~~~Glv~~v 173 (251)
T TIGR03189 96 VRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPA-ASCLLPERMGR-VAAEDLLYSGRSIDGAEGARIGLANAV 173 (251)
T ss_pred ecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCc-hHHHHHHHhCH-HHHHHHHHcCCCCCHHHHHHCCCccee
Confidence 9999999999999999999999999999999999999974 57899999996 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHH-HHHHHhhcccCCchHHhccccccccccCC
Q psy14406 161 YDDKESLLAGAIEL-GELIASKSPVAVQGTKKTLVFSRDHAVEEGLN-QVDKESKNGCDRRNCNKGVSPERMSHDCP 235 (275)
Q Consensus 161 v~~~~~l~~~a~~~-a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~e~~~~~~~~~~sp 235 (275)
+++ .+ +++.++ +++++..||.+++.+|+.++.....++++.+. .+.......+.++|+++++..+..+|+.+
T Consensus 174 ~~~-~~--~~a~~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~ 247 (251)
T TIGR03189 174 AED-PE--NAALAWFDEHPAKLSASSLRFAVRAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKRPAL 247 (251)
T ss_pred cCc-HH--HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcCCCC
Confidence 986 33 456665 68999999999999999999887778877664 44445556778999999999998877554
No 55
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=8.6e-44 Score=312.06 Aligned_cols=210 Identities=27% Similarity=0.405 Sum_probs=190.0
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
+|.+++++++.|+++|+|||+|.|++||+|+|++++..... . . ..+. . +.++..+.++|||+||+
T Consensus 36 ~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~------~---~----~~~~-~-~~~~~~l~~~~kPvIaa 100 (249)
T PRK07110 36 QLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQT------G---K----GTFT-E-ANLYSLALNCPIPVIAA 100 (249)
T ss_pred HHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccc------h---h----hhHh-h-HHHHHHHHcCCCCEEEE
Confidence 57889999999999999999999999999999998753211 0 0 0111 1 45778899999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++|+.|++++|++++|+ .+++++++||++++++||+++||||++
T Consensus 101 v~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~-~~a~~llltg~~~~a~eA~~~Glv~~v 179 (249)
T PRK07110 101 MQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGL-ALGQEMLLTARYYRGAELKKRGVPFPV 179 (249)
T ss_pred ecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCH-HHHHHHHHcCCccCHHHHHHcCCCeEE
Confidence 9999999999999999999999999999999999999999999999999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhcccc
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSP 227 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~ 227 (275)
+++ +++.+++.++++++++.||.+++.+|+.++.....++++.++.+.......+.+++.+|++..
T Consensus 180 v~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~~ 245 (249)
T PRK07110 180 LPR-AEVLEKALELARSLAEKPRHSLVLLKDHLVADRRRRLPEVIEQEVAMHEKTFHQPEVKRRIES 245 (249)
T ss_pred eCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHhHHHHHHH
Confidence 997 899999999999999999999999999999998889999999888888888899999998754
No 56
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=7.9e-44 Score=313.50 Aligned_cols=216 Identities=26% Similarity=0.310 Sum_probs=182.9
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCC-CCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVIS 79 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G-~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia 79 (275)
||.++|+.++.|++|++|||+|.| ++||+|+|++++..... .. ..+...++.++..+.++||||||
T Consensus 33 ~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~------~~-------~~~~~~~~~~~~~l~~~~kPvIa 99 (256)
T TIGR03210 33 ELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYD------GR-------GTIGLPMEELHSAIRDVPKPVIA 99 (256)
T ss_pred HHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcccc------ch-------hHHHHHHHHHHHHHHhCCCCEEE
Confidence 478899999999999999999999 79999999998732100 00 01112345677889999999999
Q ss_pred EECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCccc
Q psy14406 80 AVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSK 159 (275)
Q Consensus 80 ~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~ 159 (275)
+|||+|+|||++|+++||+||++++++|++||+++|++|+.+++++|++++|+ .+++++++||++++|+||+++||||+
T Consensus 100 av~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~-~~A~~lll~g~~~~a~eA~~~Glv~~ 178 (256)
T TIGR03210 100 RVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGE-KKAREIWYLCRRYTAQEALAMGLVNA 178 (256)
T ss_pred EECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCH-HHHHHHHHhCCCcCHHHHHHcCCcee
Confidence 99999999999999999999999999999999999999888888999999995 89999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCH-HHHHHHHHHHhhcccCCchHHhcccccccccc
Q psy14406 160 LYDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAV-EEGLNQVDKESKNGCDRRNCNKGVSPERMSHD 233 (275)
Q Consensus 160 vv~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 233 (275)
++|+ +++.+++.+++++|++.||.+++.+|+.++....... .+.+ +.......+.++|+++++.++..+|+
T Consensus 179 vv~~-~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~--~~~~~~~~~~~~d~~e~~~af~~kr~ 250 (256)
T TIGR03210 179 VVPH-DQLDAEVQKWCDEIVEKSPTAIAIAKRSFNMDTAHQRGIAGM--GMYALKLYYDTAESREGVKAFQEKRK 250 (256)
T ss_pred eeCH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcccchHHHH--HHHHHHHHccChhHHHHHHHHhccCC
Confidence 9997 8999999999999999999999999999987654321 1112 22334446788999999999988764
No 57
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-43 Score=311.81 Aligned_cols=202 Identities=25% Similarity=0.366 Sum_probs=179.5
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
||.++|++++.|++|++|||+|.|++||+|+|++++..... .. .. ...++.++.++.++|||+||+
T Consensus 35 ~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~------~~----~~----~~~~~~~~~~i~~~~kPvIAa 100 (258)
T PRK06190 35 ALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGS------AY----GA----QDALPNPSPAWPAMRKPVIGA 100 (258)
T ss_pred HHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccc------hh----hH----HHHHHHHHHHHHhCCCCEEEE
Confidence 47889999999999999999999999999999998753211 00 00 123456778899999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+ .++++|++||++++|+||+++||||++
T Consensus 101 V~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~-~~a~~l~ltg~~~~a~eA~~~GLv~~v 179 (258)
T PRK06190 101 INGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGI-GRARRMSLTGDFLDAADALRAGLVTEV 179 (258)
T ss_pred ECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCH-HHHHHHHHhCCccCHHHHHHcCCCeEe
Confidence 9999999999999999999999999999999999999999999999999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCC
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDR 218 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~ 218 (275)
+|+ +++.+++.+++++|+..||.+++.+|+.++.....++++.++.+.......+.+
T Consensus 180 v~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s 236 (258)
T PRK06190 180 VPH-DELLPRARRLAASIAGNNPAAVRALKASYDDGAAAQTGDALALEAEAARAHNRS 236 (258)
T ss_pred cCH-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcC
Confidence 997 899999999999999999999999999999988888998888877665555444
No 58
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=1.5e-43 Score=314.43 Aligned_cols=220 Identities=25% Similarity=0.287 Sum_probs=186.5
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCC-CCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVIS 79 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G-~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia 79 (275)
||.++|+.++.|++||+|||+|.| ++||+|+|++++..... ... . ....+ ....++..+.++||||||
T Consensus 44 ~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~-----~~~--~--~~~~~--~~~~~~~~l~~~~kPvIA 112 (273)
T PRK07396 44 EMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGY-----VDD--D--GVPRL--NVLDLQRLIRTCPKPVIA 112 (273)
T ss_pred HHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccc-----cch--h--hhhhh--HHHHHHHHHHhCCCCEEE
Confidence 578899999999999999999999 69999999998642110 000 0 00111 123466788999999999
Q ss_pred EECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCccc
Q psy14406 80 AVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSK 159 (275)
Q Consensus 80 ~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~ 159 (275)
+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+ .++++|++||++++|+||+++||||+
T Consensus 113 av~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~-~~a~~l~ltg~~~~A~eA~~~GLv~~ 191 (273)
T PRK07396 113 MVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQ-KKAREIWFLCRQYDAQEALDMGLVNT 191 (273)
T ss_pred EECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhH-HHHHHHHHhCCCcCHHHHHHcCCcCe
Confidence 99999999999999999999999999999999999999999999999999995 89999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccccccC
Q psy14406 160 LYDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHDC 234 (275)
Q Consensus 160 vv~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~s 234 (275)
+||+ +++.+++.+++++|+..||.+++.+|+.++.... ..+...+.+.......+.++|++|++..+..+|+.
T Consensus 192 vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p 264 (273)
T PRK07396 192 VVPL-ADLEKETVRWCREMLQNSPMALRCLKAALNADCD-GQAGLQELAGNATMLFYMTEEAQEGRNAFNEKRQP 264 (273)
T ss_pred ecCH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc-cHHHHHHHHHHHHHHHhcChhHHHHHHHHhCCCCC
Confidence 9997 8999999999999999999999999999988654 44444444555555667899999999999887643
No 59
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.1e-43 Score=316.94 Aligned_cols=231 Identities=26% Similarity=0.311 Sum_probs=187.1
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhh---hhh--HHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEI---AEQ--EDVARKSKILRKLITTYQKSISSLERCPK 75 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 75 (275)
+|.++|+.++.|++|++|||+|.|++||+|+|++++....... ... ............+...++.++..+..+||
T Consensus 35 ~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pk 114 (296)
T PRK08260 35 ELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVTLRIFDSLK 114 (296)
T ss_pred HHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccccccccccccchhHHHHHHHHHHHHHHHHhCCC
Confidence 4788999999999999999999999999999999864210000 000 00000000011222334567788999999
Q ss_pred cEEEEECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcC
Q psy14406 76 PVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECG 155 (275)
Q Consensus 76 P~Ia~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~G 155 (275)
||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+ .++++|+++|++++|+||+++|
T Consensus 115 PvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~-~~A~~llltg~~~~a~eA~~~G 193 (296)
T PRK08260 115 PVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASSWFLPRLVGL-QTALEWVYSGRVFDAQEALDGG 193 (296)
T ss_pred CEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchhhhHHHhhCH-HHHHHHHHcCCccCHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999995 8999999999999999999999
Q ss_pred CcccccCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhhc--CCHHHHHHHHHHHhhcccCCchHHhccccccccc
Q psy14406 156 LVSKLYDDKESLLAGAIELGELIASK-SPVAVQGTKKTLVFSRD--HAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSH 232 (275)
Q Consensus 156 Lv~~vv~~~~~l~~~a~~~a~~la~~-~~~a~~~~K~~l~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~ 232 (275)
|||++||+ +++.+++.+++++|+.. +|.+++.+|+.++.... ...... ..+.......+.+++++|++.++..+|
T Consensus 194 Lv~~vv~~-~~l~~~a~~~a~~i~~~~~~~a~~~~K~~l~~~~~~~~~~~~~-~~e~~~~~~~~~~~d~~egi~af~~kr 271 (296)
T PRK08260 194 LVRSVHPP-DELLPAARALAREIADNTSPVSVALTRQMMWRMAGADHPMEAH-RVDSRAIYSRGRSGDGKEGVSSFLEKR 271 (296)
T ss_pred CceeecCH-HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccCCCcHHHH-HHHHHHHHHHccChhHHHHHHHHhcCC
Confidence 99999997 89999999999999985 99999999999988642 233333 344445555678999999999998766
Q ss_pred cC
Q psy14406 233 DC 234 (275)
Q Consensus 233 ~s 234 (275)
+.
T Consensus 272 ~p 273 (296)
T PRK08260 272 PA 273 (296)
T ss_pred CC
Confidence 43
No 60
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.8e-43 Score=308.63 Aligned_cols=214 Identities=22% Similarity=0.281 Sum_probs=189.7
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
||.+++++++.|++||+|||+|.|++||+|+|++++... . ...+.+.++.++..+..+||||||+
T Consensus 31 ~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~--------~-------~~~~~~~~~~~~~~l~~~~kPvIaa 95 (248)
T PRK06072 31 EFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPD--------F-------AIDLRETFYPIIREIRFSDKIYISA 95 (248)
T ss_pred HHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhh--------h-------HHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 478899999999999999999999999999999876421 0 0112334566788899999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++|+.|+++++++++| . +++++++||++++|+||+++||||++
T Consensus 96 v~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g-~-~a~~lll~g~~~~a~eA~~~Glv~~~ 173 (248)
T PRK06072 96 INGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTG-Q-RFYEILVLGGEFTAEEAERWGLLKIS 173 (248)
T ss_pred ECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhh-H-HHHHHHHhCCccCHHHHHHCCCcccc
Confidence 999999999999999999999999999999999999999999999999999 4 79999999999999999999999963
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccccccCC
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHDCP 235 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~sp 235 (275)
+++.+++.+++++++..||.+++.+|+.++.....++++.++.+.......+.++|+++++..+..+|+..
T Consensus 174 ----~~~~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 244 (248)
T PRK06072 174 ----EDPLSDAEEMANRISNGPFQSYIAAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKREPK 244 (248)
T ss_pred ----chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCC
Confidence 24678899999999999999999999999998778899999888887778889999999999998876543
No 61
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-43 Score=312.14 Aligned_cols=221 Identities=23% Similarity=0.295 Sum_probs=193.2
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
||.++++.++.|+++++|||+|.|++||+|+|++++.....+ .. .....+...+.++++++..+||||||+
T Consensus 37 el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~---~~------~~~~~~~~~~~~~~~~l~~~~kPvIaa 107 (260)
T PRK07827 37 QLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGD---PY------DAAVARAREMTALLRAIVELPKPVIAA 107 (260)
T ss_pred HHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccC---ch------hHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 578899999999999999999999999999999987532100 00 011123445567788999999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++++.+ .++++++++|++++++||+++||||++
T Consensus 108 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~~--~~a~~l~l~g~~~~a~eA~~~Glv~~v 185 (260)
T PRK07827 108 IDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSP--RAAARYYLTGEKFGAAEAARIGLVTAA 185 (260)
T ss_pred EcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhhH--HHHHHHHHhCCccCHHHHHHcCCcccc
Confidence 999999999999999999999999999999999999999999999998754 589999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccccccCC
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHDCP 235 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~sp 235 (275)
++ ++.+++.++++++++.+|.+++.+|+.++.....++++.++.+.......+.++++++++..+..+|+.+
T Consensus 186 ~~---~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~kr~p~ 257 (260)
T PRK07827 186 AD---DVDAAVAALLADLRRGSPQGLAESKALTTAAVLAGFDRDAEELTEESARLFVSDEAREGMTAFLQKRPPR 257 (260)
T ss_pred hH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence 64 4889999999999999999999999999998888899898888877777889999999999998877544
No 62
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.1e-43 Score=316.75 Aligned_cols=227 Identities=21% Similarity=0.254 Sum_probs=180.4
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhh-hchhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLS-LGQEI--AEQEDVARKSKILRKLITTYQKSISSLERCPKPV 77 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~ 77 (275)
||.++|++++.|++||+|||+|.|++||+|+||++... ..... ....+.......+.......+..+..+.++||||
T Consensus 36 eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 115 (298)
T PRK12478 36 EIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGRWDPGKDFAMVTARETGPTQKFMAIWRASKPV 115 (298)
T ss_pred HHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcccccccCchhhhhhhhhhhcchHHHHHHHHhCCCCE
Confidence 57889999999999999999999999999999986211 00000 0000000000000000001123456788999999
Q ss_pred EEEECchhchHHHHHHHHCCEEEEeCCceEecccccc-CcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCC
Q psy14406 78 ISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDI-GLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGL 156 (275)
Q Consensus 78 Ia~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~-G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GL 156 (275)
||+|||+|+|||++|+++||+||++++++|++||+++ |++| ++++ .+++|. .++++|++||++++|+||+++||
T Consensus 116 IAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~--~~~~--~~~vG~-~~A~~llltg~~i~A~eA~~~GL 190 (298)
T PRK12478 116 IAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL--TGMW--LYRLSL-AKVKWHSLTGRPLTGVQAAEAEL 190 (298)
T ss_pred EEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--hhHH--HHHhhH-HHHHHHHHcCCccCHHHHHHcCC
Confidence 9999999999999999999999999999999999997 8875 3333 356995 89999999999999999999999
Q ss_pred cccccCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhc-CCHHHHHHHHHHHhhcccCCchHH--------hcccc
Q psy14406 157 VSKLYDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRD-HAVEEGLNQVDKESKNGCDRRNCN--------KGVSP 227 (275)
Q Consensus 157 v~~vv~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~--------e~~~~ 227 (275)
||++||+ +++.+++.+++++|+..||.+++.+|+.++.... .++++.++.+.......+.++|++ ||+.+
T Consensus 191 V~~vv~~-~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~A 269 (298)
T PRK12478 191 INEAVPF-ERLEARVAEVATELARIPLSQLQAQKLIVNQAYENMGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRA 269 (298)
T ss_pred cceecCH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHH
Confidence 9999997 8999999999999999999999999999998866 358999999988888888888886 48877
Q ss_pred cccccc
Q psy14406 228 ERMSHD 233 (275)
Q Consensus 228 ~~~~~~ 233 (275)
+..+|+
T Consensus 270 f~ekR~ 275 (298)
T PRK12478 270 AVERRD 275 (298)
T ss_pred HHHhcC
Confidence 777663
No 63
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=2.8e-43 Score=325.05 Aligned_cols=223 Identities=22% Similarity=0.340 Sum_probs=188.7
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
+|.++|+.++.|++|++|||+|.|++||+|+||+++...... . .....++...+.++.+|.++|||+||+
T Consensus 42 eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~-----~-----~~~~~~~~~~~~l~~~i~~~~kPvIAa 111 (379)
T PLN02874 42 LLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRES-----D-----DSCLEVVYRMYWLCYHIHTYKKTQVAL 111 (379)
T ss_pred HHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhccc-----c-----hHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 478899999999999999999999999999999987532110 0 011122333445677899999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| . .+++|++||++++++||+++||||++
T Consensus 112 V~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g-~-~a~~l~ltG~~i~a~eA~~~GLv~~v 189 (379)
T PLN02874 112 VHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPG-H-LGEYLALTGARLNGKEMVACGLATHF 189 (379)
T ss_pred ecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhH-H-HHHHHHHcCCcccHHHHHHcCCccEE
Confidence 999999999999999999999999999999999999999999999999988 3 79999999999999999999999999
Q ss_pred cCChhHHHH---H----------------------------------------------------------------HHH
Q psy14406 161 YDDKESLLA---G----------------------------------------------------------------AIE 173 (275)
Q Consensus 161 v~~~~~l~~---~----------------------------------------------------------------a~~ 173 (275)
||+ +++.+ + +.+
T Consensus 190 v~~-~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~eii~al~~~~~~~~~~~A~~ 268 (379)
T PLN02874 190 VPS-EKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKDTVEEIIKAFESEASKTGNEWIKE 268 (379)
T ss_pred eCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCCCHHHHHHHHhhcccccccHHHHH
Confidence 997 67755 2 237
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccC---CchHHhccccccc-cccCCc
Q psy14406 174 LGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCD---RRNCNKGVSPERM-SHDCPE 236 (275)
Q Consensus 174 ~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~e~~~~~~~-~~~sp~ 236 (275)
+++.|++.+|.+++.+|+.++.....++++.++.+......... ++|+.||+.++++ +++.|.
T Consensus 269 ~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~AflidK~r~P~ 335 (379)
T PLN02874 269 TLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRALVIDKDNAPK 335 (379)
T ss_pred HHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccceEEEcCCCCCC
Confidence 88999999999999999999998888899999887665444444 8999999999984 436663
No 64
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=4.4e-43 Score=309.56 Aligned_cols=217 Identities=24% Similarity=0.419 Sum_probs=187.3
Q ss_pred CHHHHHHHhhhCCCceEEEEeeC-C-CCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAA-G-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVI 78 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~-G-~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~I 78 (275)
+|.++++++++|+ +++|||+|. | ++||+|+|++++..... +. ..+...++.++..+..+|||||
T Consensus 35 ~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~------~~-------~~~~~~~~~l~~~i~~~~kPvI 100 (261)
T PRK11423 35 DLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGR------DP-------LSYDDPLRQILRMIQKFPKPVI 100 (261)
T ss_pred HHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccc------cH-------HHHHHHHHHHHHHHHhCCCCEE
Confidence 4778999999887 999999986 3 89999999998743111 00 1122345667888999999999
Q ss_pred EEECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcc
Q psy14406 79 SAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVS 158 (275)
Q Consensus 79 a~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~ 158 (275)
|+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|+ .++++|+++|++++|+||+++||||
T Consensus 101 aav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~-~~a~~l~l~g~~~~a~eA~~~GLv~ 179 (261)
T PRK11423 101 AMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGF-HIVKEMFFTASPITAQRALAVGILN 179 (261)
T ss_pred EEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHH-HHHHHHHHcCCCcCHHHHHHcCCcC
Confidence 999999999999999999999999999999999999999999999999999995 9999999999999999999999999
Q ss_pred cccCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhc-CCH-HHHHHHHHHHhhcccCCchHHhcccccccccc
Q psy14406 159 KLYDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRD-HAV-EEGLNQVDKESKNGCDRRNCNKGVSPERMSHD 233 (275)
Q Consensus 159 ~vv~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~-~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 233 (275)
++||+ +++.+.+.+++++++..+|.+++.+|+.++.... ..+ +..++.+.......+.++|+++++..+..+|+
T Consensus 180 ~vv~~-~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~~kr~ 255 (261)
T PRK11423 180 HVVEV-EELEDFTLQMAHHISEKAPLAIAVIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKRK 255 (261)
T ss_pred cccCH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHhccCC
Confidence 99997 8999999999999999999999999999986543 233 46666666666677889999999999887654
No 65
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.1e-43 Score=304.79 Aligned_cols=208 Identities=24% Similarity=0.384 Sum_probs=183.0
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
||.++++++++| ++++|||+|.|++||+|+|+++... . ..+...++.++..+.++||||||+
T Consensus 31 ~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~--~---------------~~~~~~~~~~~~~l~~~~kP~Iaa 92 (243)
T PRK07854 31 ELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY--A---------------DDFPDALIEMLHAIDAAPVPVIAA 92 (243)
T ss_pred HHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh--H---------------HHHHHHHHHHHHHHHhCCCCEEEE
Confidence 477888888854 9999999999999999999985310 0 112334556788899999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++|+.|++++|++++|+ .++++|++||++++|+||+++||||++
T Consensus 93 v~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~-~~a~~l~ltg~~~~a~eA~~~Glv~~v 171 (243)
T PRK07854 93 INGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGG-GRARAMLLGAEKLTAEQALATGMANRI 171 (243)
T ss_pred ecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCH-HHHHHHHHcCCCcCHHHHHHCCCcccc
Confidence 9999999999999999999999999999999999999999999999999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccccccC
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHDC 234 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~s 234 (275)
++. . ++.+++++|++.||.++..+|+.++.. .++++.++.+.......+.++|+++++..+..+|+.
T Consensus 172 ~~~----~-~a~~~a~~l~~~~~~a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p 238 (243)
T PRK07854 172 GTL----A-DAQAWAAEIAGLAPLALQHAKRVLNDD--GAIEEAWPAHKELFDKAWASQDAIEAQVARIEKRPP 238 (243)
T ss_pred cCH----H-HHHHHHHHHHhCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCCCC
Confidence 752 2 789999999999999999999999876 568888888877777788999999999998887643
No 66
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=6.7e-43 Score=301.28 Aligned_cols=184 Identities=24% Similarity=0.406 Sum_probs=165.8
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
+|.++|+++++|+++++|||||.|++||+|+|++++..... .+ ...+.+.+++++.++.++||||||+
T Consensus 38 ~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~-----~~-------~~~~~~~~~~~~~~i~~~~kPvIAa 105 (222)
T PRK05869 38 EIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSA-----QE-------ADTAARVRQQAVDAVAAIPKPTVAA 105 (222)
T ss_pred HHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccCh-----hh-------HHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 57889999999999999999999999999999998753211 01 1112334567788999999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+ .++++++++|++++|+||+++||||++
T Consensus 106 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~-~~a~~l~ltg~~~~a~eA~~~Glv~~v 184 (222)
T PRK05869 106 ITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGP-SRAKELVFSGRFFDAEEALALGLIDEM 184 (222)
T ss_pred EcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCH-HHHHHHHHcCCCcCHHHHHHCCCCCEe
Confidence 9999999999999999999999999999999999999999999999999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhc
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRD 198 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~ 198 (275)
+|+ +++.+++.+++++|++.||.+++.+|+.++..++
T Consensus 185 v~~-~~l~~~a~~~a~~ia~~~~~a~~~~K~~~~~~~~ 221 (222)
T PRK05869 185 VAP-DDVYDAAAAWARRFLDGPPHALAAAKAGISDVYE 221 (222)
T ss_pred eCc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 997 8999999999999999999999999999987653
No 67
>PLN02921 naphthoate synthase
Probab=100.00 E-value=1.1e-42 Score=314.97 Aligned_cols=221 Identities=24% Similarity=0.252 Sum_probs=186.1
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCC-CCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVIS 79 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G-~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia 79 (275)
||.++|+.++.|+++++|||+|.| ++||+|+|++++..... ... .....+ ....++..|.++||||||
T Consensus 98 eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~-----~~~----~~~~~~--~~~~l~~~l~~~~kPvIA 166 (327)
T PLN02921 98 ELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGY-----VGP----DDAGRL--NVLDLQIQIRRLPKPVIA 166 (327)
T ss_pred HHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccc-----cch----hHHHHH--HHHHHHHHHHhCCCCEEE
Confidence 578899999999999999999999 89999999987642100 000 000111 123467788999999999
Q ss_pred EECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCccc
Q psy14406 80 AVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSK 159 (275)
Q Consensus 80 ~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~ 159 (275)
+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+ .++++|+++|++++|+||+++||||+
T Consensus 167 aVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~-~~A~ellltG~~~~A~eA~~~GLV~~ 245 (327)
T PLN02921 167 MVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQ-KKAREMWFLARFYTASEALKMGLVNT 245 (327)
T ss_pred EECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCH-HHHHHHHHcCCcCCHHHHHHCCCceE
Confidence 99999999999999999999999999999999999999999999999999995 89999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccccccCC
Q psy14406 160 LYDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHDCP 235 (275)
Q Consensus 160 vv~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~sp 235 (275)
++|. +++.+++.+++++|+..+|.+++.+|+.++...+. .......+.......+.++|++|++.++..+|+..
T Consensus 246 vv~~-~~l~~~a~~~a~~la~~~p~al~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~ 319 (327)
T PLN02921 246 VVPL-DELEGETVKWCREILRNSPTAIRVLKSALNAADDG-HAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPD 319 (327)
T ss_pred EeCH-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCC
Confidence 9997 89999999999999999999999999999887553 33333333345555678999999999999877544
No 68
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=4.6e-43 Score=319.88 Aligned_cols=224 Identities=24% Similarity=0.341 Sum_probs=193.5
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCC-CCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVIS 79 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G-~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia 79 (275)
+|.+++++++.|++|++|||+|.| ++||+|+|++++...... .+. .....++...++++.++..+|||+||
T Consensus 34 ~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~----~~~----~~~~~~~~~~~~~~~~i~~~~kPvIA 105 (342)
T PRK05617 34 AIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARA----GDP----LAADRFFREEYRLNALIARYPKPYIA 105 (342)
T ss_pred HHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhcc----CCc----hhHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 477899999999999999999999 999999999987532110 000 00012233345677889999999999
Q ss_pred EECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCccc
Q psy14406 80 AVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSK 159 (275)
Q Consensus 80 ~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~ 159 (275)
+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+++.| ..+++|++||++++|+||+++||||+
T Consensus 106 aVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g--~~a~~llltG~~i~A~eA~~~GLv~~ 183 (342)
T PRK05617 106 LMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG--ALGTYLALTGARISAADALYAGLADH 183 (342)
T ss_pred EEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc--HHHHHHHHcCCCCCHHHHHHcCCcce
Confidence 9999999999999999999999999999999999999999999999999866 47999999999999999999999999
Q ss_pred ccCChhHHHHH--------------------------------------------------------------HHHHHHH
Q psy14406 160 LYDDKESLLAG--------------------------------------------------------------AIELGEL 177 (275)
Q Consensus 160 vv~~~~~l~~~--------------------------------------------------------------a~~~a~~ 177 (275)
++|+ +++.+. +.+++++
T Consensus 184 vv~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~a~~~a~~ 262 (342)
T PRK05617 184 FVPS-ADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAGDTVEDIIAALEADGGEFAAKTADT 262 (342)
T ss_pred ecCH-HHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCCCCHHHHHHHHHhccHHHHHHHHHH
Confidence 9997 788776 8889999
Q ss_pred HhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhcccccc-ccccCC
Q psy14406 178 IASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPER-MSHDCP 235 (275)
Q Consensus 178 la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~-~~~~sp 235 (275)
|++.+|.+++.+|+.++.....++++.++.+.......+.++|+.+|+.+++ .+++.|
T Consensus 263 i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~ek~r~p 321 (342)
T PRK05617 263 LRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSPDFVEGVRAVLIDKDRNP 321 (342)
T ss_pred HHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCchhhccceEEEcCCCCC
Confidence 9999999999999999998888999999999888888889999999999997 442445
No 69
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=7.3e-42 Score=307.47 Aligned_cols=228 Identities=22% Similarity=0.253 Sum_probs=185.1
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCC-------CCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHH-HHHHHHHHHHhhc
Q psy14406 1 EIGECFDSLSENEECRVIILSAAG-------KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL-ITTYQKSISSLER 72 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G-------~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~ 72 (275)
+|.+++++++.|++|++|||+|.| ++||+|+|++++.....+.......... ..... ......+...+..
T Consensus 56 ~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~ 133 (302)
T PRK08321 56 ELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTV--DPARAGRLHILEVQRLIRF 133 (302)
T ss_pred HHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccccch--hhhHHHHHHHHHHHHHHHc
Confidence 478899999999999999999998 5999999998753210000000000000 00001 0112345677889
Q ss_pred CCCcEEEEECchhchHHHHHHHHCCEEEEe-CCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHH
Q psy14406 73 CPKPVISAVHGACIGGGMSLITAADIRYAT-KDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEA 151 (275)
Q Consensus 73 ~~kP~Ia~v~G~a~GgG~~lal~~D~rva~-~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA 151 (275)
+||||||+|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|+ .++++|++||++++|+||
T Consensus 134 ~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~~~~~L~r~vG~-~~A~~l~ltG~~~~A~eA 212 (302)
T PRK08321 134 MPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQVGQ-KFAREIFFLGRTYSAEEA 212 (302)
T ss_pred CCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCchHHHHHHHHhCH-HHHHHHHHcCCccCHHHH
Confidence 999999999999999999999999999999 689999999999999999999999999995 899999999999999999
Q ss_pred HHcCCcccccCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhcccccccc
Q psy14406 152 RECGLVSKLYDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMS 231 (275)
Q Consensus 152 ~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~ 231 (275)
+++||||++||+ +++.+++.+++++|+..+|.+++.+|+.++.... ........+...+...+.+++.++++..+..+
T Consensus 213 ~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~ek 290 (302)
T PRK08321 213 HDMGAVNAVVPH-AELETEALEWAREINGKSPTAMRMLKYAFNLTDD-GLVGQQLFAGEATRLAYMTDEAQEGRDAFLEK 290 (302)
T ss_pred HHCCCceEeeCH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc-ccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcc
Confidence 999999999997 8899999999999999999999999999987655 33333444555666678899999999999887
Q ss_pred cc
Q psy14406 232 HD 233 (275)
Q Consensus 232 ~~ 233 (275)
|+
T Consensus 291 r~ 292 (302)
T PRK08321 291 RD 292 (302)
T ss_pred CC
Confidence 64
No 70
>KOG1684|consensus
Probab=100.00 E-value=7.4e-43 Score=307.49 Aligned_cols=244 Identities=20% Similarity=0.270 Sum_probs=194.1
Q ss_pred HHHHHHhhhCCCceEEEEeeCC-CCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Q psy14406 3 GECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAV 81 (275)
Q Consensus 3 ~~~l~~~~~d~~v~~vVl~g~G-~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~v 81 (275)
.-.|..|+.++.+++||+.|.| ++||+|+|++.......+ ......+.++...|.+.+.+.++.||+||.+
T Consensus 71 ~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d--------~~~~~~~~fF~~eYsl~~~igtY~KP~Valm 142 (401)
T KOG1684|consen 71 YPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKD--------KETPEVKKFFTEEYSLNHLIGTYLKPYVALM 142 (401)
T ss_pred HHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhc--------CCchHHHHHHHHHHHHHHHHHHhcCceEEEe
Confidence 3578999999999999999996 999999999865432221 1112457888999999999999999999999
Q ss_pred CchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCccccc
Q psy14406 82 HGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLY 161 (275)
Q Consensus 82 ~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~vv 161 (275)
||+.||||++|+++.-||||||++.|+|||+.||++||+|++|+|+|+.| ..+.||.|||.++++.||+..||++|+|
T Consensus 143 dGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg--~lg~YLgLTG~rl~GaD~~~~GlATHyv 220 (401)
T KOG1684|consen 143 DGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG--YLGLYLGLTGQRLSGADALRCGLATHYV 220 (401)
T ss_pred eceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc--HHHHhhhhccceecchHHHHhcchhhcc
Confidence 99999999999999999999999999999999999999999999999999 4899999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhcCCHHHHH------------------HHHHHHHhhh-cCCHHHHHHHHHHHhhcccCCchHH
Q psy14406 162 DDKESLLAGAIELGELIASKSPVAVQ------------------GTKKTLVFSR-DHAVEEGLNQVDKESKNGCDRRNCN 222 (275)
Q Consensus 162 ~~~~~l~~~a~~~a~~la~~~~~a~~------------------~~K~~l~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~ 222 (275)
++ ++|..--.++...+...|...+. ..-..++..+ ..+++++++.....+. ....+.+
T Consensus 221 ~S-~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~~~Fs~~tVeeIie~lk~~q~--~~~~~ew 297 (401)
T KOG1684|consen 221 PS-EKLPSLEERLLKNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVINKCFSANTVEEIIEALKNYQQ--SADGSEW 297 (401)
T ss_pred ch-hhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHHHhhccccHHHHHHHHHHHhh--hhhHHHH
Confidence 98 66543333333222222212222 2222233222 1277888886655443 2334456
Q ss_pred hccccccccccCCcchhhHHHHHhccCccChHHHHHH
Q psy14406 223 KGVSPERMSHDCPECLIGSIGVFHTLDRVDLNQCDED 259 (275)
Q Consensus 223 e~~~~~~~~~~sp~~~~v~~~~~~~~~~~~~~~~~~~ 259 (275)
+.-+.+.+.+.||+||+||+|+|++|+.+++++||-.
T Consensus 298 ak~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~ 334 (401)
T KOG1684|consen 298 AKETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCLTM 334 (401)
T ss_pred HHHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHHHH
Confidence 7788999999999999999999999999999999964
No 71
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.1e-41 Score=297.97 Aligned_cols=217 Identities=18% Similarity=0.162 Sum_probs=182.7
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
||.++|++++ +++++|||+|.|++||+|+|++++...... .. . .......++.++.++.++||||||+
T Consensus 35 ~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~-----~~-~----~~~~~~~~~~~~~~l~~~~kPvIaa 102 (255)
T PRK07112 35 ECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDA-----GR-A----DLIDAEPLYDLWHRLATGPYVTIAH 102 (255)
T ss_pred HHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhcccc-----ch-h----hhhhHHHHHHHHHHHHcCCCCEEEE
Confidence 4677888887 479999999999999999999987432110 00 0 0011233456788899999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++|+++ +.+|++++|+ .++++++++|++++|+||+++||||++
T Consensus 103 v~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~-~~a~~l~l~g~~~~a~eA~~~Glv~~v 180 (255)
T PRK07112 103 VRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGT-QKAHYMTLMTQPVTAQQAFSWGLVDAY 180 (255)
T ss_pred EecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCH-HHHHHHHHhCCcccHHHHHHcCCCcee
Confidence 99999999999999999999999999999999999999865 4679999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccccccCC
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHDCP 235 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~sp 235 (275)
+|+ ++. .+.+++++++..+|.+++.+|+.++.. ...+.+.++.+.......+.++|+++++..+..+|+..
T Consensus 181 v~~-~~~--~~~~~a~~l~~~~p~a~~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~ 251 (255)
T PRK07112 181 GAN-SDT--LLRKHLLRLRCLNKAAVARYKSYASTL-DDTVAAARPAALAANIEMFADPENLRKIARYVETGKFP 251 (255)
T ss_pred cCc-HHH--HHHHHHHHHHhCCHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCCC
Confidence 987 442 578899999999999999999999875 44688888888777777889999999999999877543
No 72
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.4e-41 Score=304.35 Aligned_cols=242 Identities=21% Similarity=0.232 Sum_probs=184.2
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHH-----------HHHH--HHHHHHHHHHHHH
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVA-----------RKSK--ILRKLITTYQKSI 67 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~-----------~~~~--~~~~~~~~~~~~~ 67 (275)
||.++|++++.|++|++|||+|.|++||+|+||+++.............. .... ....++..+++++
T Consensus 41 eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (302)
T PRK08272 41 ELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGF 120 (302)
T ss_pred HHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccccccccccccccccccccccchhhHHHHHHHHHHH
Confidence 57889999999999999999999999999999998754211000000000 0000 0012344566778
Q ss_pred HHhhcCCCcEEEEECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCC
Q psy14406 68 SSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIE 147 (275)
Q Consensus 68 ~~l~~~~kP~Ia~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~ 147 (275)
..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|.+|+. ..+++++|+ .++++|++||++++
T Consensus 121 ~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~gg~~~~---~~~~~~vG~-~~A~~llltG~~i~ 196 (302)
T PRK08272 121 MSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPAT---GMWAYRLGP-QRAKRLLFTGDCIT 196 (302)
T ss_pred HHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhcccCChH---HHHHHHhhH-HHHHHHHHcCCccC
Confidence 88999999999999999999999999999999999999999999998666643 357889995 89999999999999
Q ss_pred HHHHHHcCCcccccCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCC-HHHH--HHHHHHHhhcccCCchHHhc
Q psy14406 148 AAEARECGLVSKLYDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHA-VEEG--LNQVDKESKNGCDRRNCNKG 224 (275)
Q Consensus 148 a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~-~~~~--l~~~~~~~~~~~~~~~~~e~ 224 (275)
|+||+++||||++||+ +++.+++.+++++|+..||.+++.+|+.++..++.. .... +......
T Consensus 197 a~eA~~~GLv~~vv~~-~~l~~~a~~la~~ia~~~~~a~~~~K~~l~~~~~~~g~~~~~~~~~~~~~------------- 262 (302)
T PRK08272 197 GAQAAEWGLAVEAVPP-EELDERTERLVERIAAVPVNQLAMVKLAVNSALLQQGVATSQMLATVFDG------------- 262 (302)
T ss_pred HHHHHHcCCCceecCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-------------
Confidence 9999999999999997 899999999999999999999999999999876532 1111 1111110
Q ss_pred cccccccccCCcchhhHHHHHhccCccChHHHHHHHHHhhccccc
Q psy14406 225 VSPERMSHDCPECLIGSIGVFHTLDRVDLNQCDEDLALLFGGKHR 269 (275)
Q Consensus 225 ~~~~~~~~~sp~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (275)
. .+.+|.. ..|. ++.+...++++++.+|.+||++.+
T Consensus 263 ~-----~~~~~~~--~~~~--~~~~~~~~~~a~~~rd~~~~~~~~ 298 (302)
T PRK08272 263 I-----ARHTPEG--HAFK--ADAAEHGFKEAVRERDEPFGDGGR 298 (302)
T ss_pred H-----HhcCchH--HHHH--HHHHHhhHHHHHhhcccccccccc
Confidence 1 1223321 2222 223356899999999999999877
No 73
>KOG1679|consensus
Probab=100.00 E-value=3.7e-42 Score=283.79 Aligned_cols=221 Identities=29% Similarity=0.479 Sum_probs=204.3
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCC-CCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVIS 79 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G-~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia 79 (275)
+|.++|+++..|+.+|+|+|++.- +.||+|.||++-..+.+ .....|++.++.++..+.++|.||||
T Consensus 62 ~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~------------~Ev~~fV~~lR~~~~dIe~Lp~P~IA 129 (291)
T KOG1679|consen 62 QLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSP------------SEVTRFVNGLRGLFNDIERLPQPVIA 129 (291)
T ss_pred HHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCH------------HHHHHHHHHHHHHHHHHHhCCcccee
Confidence 367899999999999999999876 99999999999766543 23456788888999999999999999
Q ss_pred EECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCccc
Q psy14406 80 AVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSK 159 (275)
Q Consensus 80 ~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~ 159 (275)
+|+|.++|||++|+++||+||++++++|+++|++++++|+.|++++|||.+|. +.+++|++|++.+++.||...|||||
T Consensus 130 AidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~-alaKELIftarvl~g~eA~~lGlVnh 208 (291)
T KOG1679|consen 130 AIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGV-ALAKELIFTARVLNGAEAAKLGLVNH 208 (291)
T ss_pred hhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhH-HHHHhHhhhheeccchhHHhcchHHH
Confidence 99999999999999999999999999999999999999999999999999995 99999999999999999999999999
Q ss_pred ccCCh---hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccccccC
Q psy14406 160 LYDDK---ESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHDC 234 (275)
Q Consensus 160 vv~~~---~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~s 234 (275)
+|... +.....+.++|++|....|.+++..|..++...+.++...+..++.-+.....+.|.-||+.++..+|.+
T Consensus 209 vv~qneegdaa~~kal~lA~eilp~gPiavr~aKlAIn~G~evdiasgl~iEe~CYaq~i~t~drLeglaaf~ekr~p 286 (291)
T KOG1679|consen 209 VVEQNEEGDAAYQKALELAREILPQGPIAVRLAKLAINLGMEVDIASGLSIEEMCYAQIIPTKDRLEGLAAFKEKRKP 286 (291)
T ss_pred HHhcCccccHHHHHHHHHHHHhccCCchhhhHHHHHhccCceecccccccHHHHHHHhcCcHHHHHHHHHHHHhhcCC
Confidence 99763 3567779999999999999999999999999999999999999999999999999999999999998754
No 74
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=6.1e-41 Score=319.75 Aligned_cols=222 Identities=20% Similarity=0.229 Sum_probs=195.1
Q ss_pred CHHHHHHHhh-hCCCceEEEEeeCCCC-cccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEE
Q psy14406 1 EIGECFDSLS-ENEECRVIILSAAGKI-FTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVI 78 (275)
Q Consensus 1 el~~~l~~~~-~d~~v~~vVl~g~G~~-FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~I 78 (275)
||.+++.+++ +|++||+|||+|.|+. ||+|+|++.... .. . ......+..+++++.+|..+|||+|
T Consensus 302 ~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~~~-~~------~-----~~~~~~~~~~~~~~~~l~~~~kpvi 369 (546)
T TIGR03222 302 ELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLEAH-KD------H-----WFVRETIGYLRRTLARLDVSSRSLF 369 (546)
T ss_pred HHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCcccccc-cc------c-----hhHHHHHHHHHHHHHHHHcCCCCEE
Confidence 5788999998 4599999999999977 999999984211 00 0 0111222334567889999999999
Q ss_pred EEE-CchhchHH-HHHHHHCCEEEE-------eCCceEeccccccCcccCchhhhhhhHHh-CcHHHH--HHHHhcCCCC
Q psy14406 79 SAV-HGACIGGG-MSLITAADIRYA-------TKDAWFTLKEVDIGLTADVGALQRLPRII-GNQSLV--NEIAFTARKI 146 (275)
Q Consensus 79 a~v-~G~a~GgG-~~lal~~D~rva-------~~~a~f~~pe~~~G~~p~~g~~~~l~r~~-G~~~~a--~~l~ltG~~~ 146 (275)
|+| ||+|+||| ++|+++||+||+ +++++|++||+++|++|++|++++|++++ |. .++ +++++||+++
T Consensus 370 Aav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~~L~~~v~G~-~~a~~~~~~ltg~~i 448 (546)
T TIGR03222 370 ALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNFGLYPMVNGLSRLATRFYAE-PAPVAAVRDKIGQAL 448 (546)
T ss_pred EEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCccccccCCCcCcHHHHHHHhcCc-hhHHHHHHHHhCCCC
Confidence 999 89999999 999999999999 89999999999999999999999999998 95 778 5599999999
Q ss_pred CHHHHHHcCCcccccCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHH-HHHHHHHhhcccCCchHHh--
Q psy14406 147 EAAEARECGLVSKLYDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEG-LNQVDKESKNGCDRRNCNK-- 223 (275)
Q Consensus 147 ~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~e-- 223 (275)
+|+||+++|||++++|+ +++.+++.+++++|++.+|.+++.+|+.++.....+++.. +..+..++...+.++|..|
T Consensus 449 ~A~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~ 527 (546)
T TIGR03222 449 DAEEAERLGLVTAAPDD-IDWEDEIRIALEERASFSPDALTGLEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGEN 527 (546)
T ss_pred CHHHHHHcCCcccccCc-hHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchh
Confidence 99999999999999998 8999999999999999999999999999999999999999 9999888888889999999
Q ss_pred -ccccccccccCCc
Q psy14406 224 -GVSPERMSHDCPE 236 (275)
Q Consensus 224 -~~~~~~~~~~sp~ 236 (275)
|+.++..+|+.-+
T Consensus 528 ~g~~af~ekr~p~f 541 (546)
T TIGR03222 528 GALKVYGSGKKAQF 541 (546)
T ss_pred hHHHHHccCCCCCC
Confidence 9999999887543
No 75
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.7e-40 Score=295.67 Aligned_cols=206 Identities=18% Similarity=0.195 Sum_probs=167.5
Q ss_pred CHHHHHHHhhh-----CCCceEEEEeeC-CCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh---
Q psy14406 1 EIGECFDSLSE-----NEECRVIILSAA-GKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLE--- 71 (275)
Q Consensus 1 el~~~l~~~~~-----d~~v~~vVl~g~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--- 71 (275)
||.+++++++. |++|++|||+|. |++||+|+|++++...... .+. ..+..+...+...+.++.
T Consensus 47 eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~----~~~----~~~~~~~~~~~~~~~~l~~~~ 118 (287)
T PRK08788 47 DIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRA----GDR----DALLAYARACVDGVHAFHRGF 118 (287)
T ss_pred HHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccc----cch----HHHHHHHHHHHHHHHHHHHhc
Confidence 57889999988 899999999999 6999999999987431110 000 001111112222233332
Q ss_pred cCCCcEEEEECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHH
Q psy14406 72 RCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEA 151 (275)
Q Consensus 72 ~~~kP~Ia~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA 151 (275)
.+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+ .++++|++||++++|+||
T Consensus 119 ~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~~vG~-~~A~ellltG~~l~A~eA 197 (287)
T PRK08788 119 GAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRVGP-KLAEELILSGKLYTAEEL 197 (287)
T ss_pred CCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHHHhhH-HHHHHHHHcCCCCCHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999995 899999999999999999
Q ss_pred HHcCCcccccCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccC
Q psy14406 152 RECGLVSKLYDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCD 217 (275)
Q Consensus 152 ~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~ 217 (275)
+++||||+++|+ +++.+++.+++++|+.. |.+....|+.++.....++++.++.+..+.....+
T Consensus 198 ~~~GLV~~vv~~-~el~~~a~~~a~~ia~~-~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (287)
T PRK08788 198 HDMGLVDVLVED-GQGEAAVRTFIRKSKRK-LNGWRAMLRARRRVNPLSLEELMDITEIWVDAALQ 261 (287)
T ss_pred HHCCCCcEecCc-hHHHHHHHHHHHHHhcC-ccHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhh
Confidence 999999999997 89999999999999987 77777777777776666888888877665443333
No 76
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.1e-40 Score=296.16 Aligned_cols=212 Identities=27% Similarity=0.405 Sum_probs=172.7
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhH-------H---HHHHHHHHHHHHHHHHHHHHHh
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQE-------D---VARKSKILRKLITTYQKSISSL 70 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~-------~---~~~~~~~~~~~~~~~~~~~~~l 70 (275)
||.+++++++.|+++++|||||.|++||+|+|++++........... + ..............+.+++..+
T Consensus 35 eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (288)
T PRK08290 35 ELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRW 114 (288)
T ss_pred HHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999998632110000000 0 0000001112233455677889
Q ss_pred hcCCCcEEEEECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHH
Q psy14406 71 ERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAE 150 (275)
Q Consensus 71 ~~~~kP~Ia~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~e 150 (275)
.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ |+ .+++++++++|+ .++++|++||++++|+|
T Consensus 115 ~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl-~~-~~~~~l~~~iG~-~~A~~llltG~~i~A~e 191 (288)
T PRK08290 115 RDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGI-PG-VEYFAHPWELGP-RKAKELLFTGDRLTADE 191 (288)
T ss_pred HhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCc-Cc-chHHHHHHHhhH-HHHHHHHHcCCCCCHHH
Confidence 9999999999999999999999999999999999999999999998 44 346778999995 89999999999999999
Q ss_pred HHHcCCcccccCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcC-CHHHHHHHHHHHhhccc
Q psy14406 151 ARECGLVSKLYDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDH-AVEEGLNQVDKESKNGC 216 (275)
Q Consensus 151 A~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~l~~~~~~~~~~~ 216 (275)
|+++||||++|++ +++.+++.+++++|++.||.+++.+|+.++...+. ++++.+..+.......+
T Consensus 192 A~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (288)
T PRK08290 192 AHRLGMVNRVVPR-DELEAETLELARRIAAMPPFGLRLTKRAVNQTLDAQGFRAALDAVFDLHQLGH 257 (288)
T ss_pred HHHCCCccEeeCH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHcc
Confidence 9999999999997 89999999999999999999999999999988765 68888887766544443
No 77
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=1.6e-40 Score=317.87 Aligned_cols=220 Identities=21% Similarity=0.241 Sum_probs=193.1
Q ss_pred CHHHHHHHhhh-CCCceEEEEeeCC-CCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEE
Q psy14406 1 EIGECFDSLSE-NEECRVIILSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVI 78 (275)
Q Consensus 1 el~~~l~~~~~-d~~v~~vVl~g~G-~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~I 78 (275)
||.+++++++. |++||+|||+|.| ++||+|+|++... ... .. ........++.++.+|..+|||||
T Consensus 306 eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~-~~~------~~-----~~~~~~~~~~~~~~~l~~~~kPvI 373 (550)
T PRK08184 306 ELDDAILHLRTNELDIGTWVLKTEGDAAAVLAADATLLA-HKD------HW-----LVRETRGYLRRTLKRLDVTSRSLF 373 (550)
T ss_pred HHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCChhhhc-ccc------hH-----HHHHHHHHHHHHHHHHHhCCCCEE
Confidence 47788999986 7999999999999 5999999987321 110 00 001122344557889999999999
Q ss_pred EEEC-chhchHH-HHHHHHCCEEEEe-------CCceEeccccccCcccCchhhhhhhHH-hCcHHHHHHH--HhcCCCC
Q psy14406 79 SAVH-GACIGGG-MSLITAADIRYAT-------KDAWFTLKEVDIGLTADVGALQRLPRI-IGNQSLVNEI--AFTARKI 146 (275)
Q Consensus 79 a~v~-G~a~GgG-~~lal~~D~rva~-------~~a~f~~pe~~~G~~p~~g~~~~l~r~-~G~~~~a~~l--~ltG~~~ 146 (275)
|+|| |+|+||| ++|+++||+||++ ++++|++||+++|++|++|++++|+++ +|+ .+++++ ++||+++
T Consensus 374 AaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~L~r~~vG~-~~A~~~~l~~tg~~i 452 (550)
T PRK08184 374 ALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSALNFGLYPMVNGLSRLARRFYGE-PDPLAAVRAKIGQPL 452 (550)
T ss_pred EEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccccccCCCCCCcHHHhHHHhcCh-HHHHHHHHHHhCCcC
Confidence 9997 9999999 9999999999999 999999999999999999999999998 696 888887 5899999
Q ss_pred CHHHHHHcCCcccccCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHH-HHHHHHHhhcccCCchHHh--
Q psy14406 147 EAAEARECGLVSKLYDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEG-LNQVDKESKNGCDRRNCNK-- 223 (275)
Q Consensus 147 ~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~e-- 223 (275)
+|+||+++||||+++|+ +++.+++.+++++|++.||.+++.+|+.++.....++++. +..+..++...+.++|.+|
T Consensus 453 ~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~ 531 (550)
T PRK08184 453 DADAAEELGLVTAAPDD-IDWEDEVRIALEERASLSPDALTGMEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEK 531 (550)
T ss_pred CHHHHHHcCCcccccCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 99999999999999997 8999999999999999999999999999999999999999 8998888888889999999
Q ss_pred -ccccccccccC
Q psy14406 224 -GVSPERMSHDC 234 (275)
Q Consensus 224 -~~~~~~~~~~s 234 (275)
|+.++..+|+.
T Consensus 532 ~g~~af~ekr~~ 543 (550)
T PRK08184 532 GALKVYGTGQKA 543 (550)
T ss_pred hHHHHhccCCCC
Confidence 99999998764
No 78
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-40 Score=287.39 Aligned_cols=193 Identities=24% Similarity=0.288 Sum_probs=169.2
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
||.+++++++ +++++|||+|.|++||+|+|++++... . .....+...+++++.++.++||||||+
T Consensus 33 ~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~-~------------~~~~~~~~~~~~l~~~l~~~~kPvIAa 97 (229)
T PRK06213 33 ALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSG-A------------QAAIALLTAGSTLARRLLSHPKPVIVA 97 (229)
T ss_pred HHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcc-h------------HhHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4678888877 567999999999999999999987421 0 011234455667788999999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCC-ceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKD-AWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSK 159 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~-a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~ 159 (275)
|||+|+|||++|+++|||||++++ ++|++||+++|++|+.++.+++++++|. ..+++++++|++++|+||+++||||+
T Consensus 98 v~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~-~~a~~lll~g~~~~a~eA~~~Glv~~ 176 (229)
T PRK06213 98 CTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTP-SAFQRAVINAEMFDPEEAVAAGFLDE 176 (229)
T ss_pred EcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCH-HHHHHHHHcCcccCHHHHHHCCCcee
Confidence 999999999999999999999999 9999999999999888888889999995 89999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Q psy14406 160 LYDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDK 210 (275)
Q Consensus 160 vv~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~ 210 (275)
++|+ +++.+++.+++++++..+|.+++.+|+.++.....++.+.++.+..
T Consensus 177 vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~ 226 (229)
T PRK06213 177 VVPP-EQLLARAQAAARELAGLNMGAHAATKLKVRAAALEAIRAAIEGDAA 226 (229)
T ss_pred ccCh-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhchhhhhh
Confidence 9997 8999999999999999999999999999998766667766666544
No 79
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=6.1e-40 Score=324.54 Aligned_cols=223 Identities=24% Similarity=0.342 Sum_probs=192.3
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
+|.++++.++.|++|++|||+|.|++||+|+|++++...... + ......+...++.++.++..+|||+||+
T Consensus 38 ~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~i~~~~kPvIAa 108 (715)
T PRK11730 38 SLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAA-----P----EEELSQWLHFANSIFNRLEDLPVPTVAA 108 (715)
T ss_pred HHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccC-----C----HHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 478899999999999999999999999999999987532100 0 0112234445667788999999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|. .++++|++||++++|+||+++||||++
T Consensus 109 v~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~-~~A~~llltG~~~~A~eA~~~GLv~~v 187 (715)
T PRK11730 109 INGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGA-DNALEWIAAGKDVRAEDALKVGAVDAV 187 (715)
T ss_pred ECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCH-HHHHHHHHcCCcCCHHHHHHCCCCeEe
Confidence 9999999999999999999999999999999999999999999999999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcC------------CHH---------HHHHHHH------------------HHHhhhcCCH
Q psy14406 161 YDDKESLLAGAIELGELIASK------------SPV---------AVQGTKK------------------TLVFSRDHAV 201 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~------------~~~---------a~~~~K~------------------~l~~~~~~~~ 201 (275)
||+ +++.+++.+++++++.. +|. +++.+|+ .++.....++
T Consensus 188 v~~-~~l~~~a~~~a~~la~~~~~~~~~~~~~~~p~a~~~~~~~~~~~~~k~~~~~~~~~~~pa~~~~~~~i~~~~~~~~ 266 (715)
T PRK11730 188 VAP-EKLQEAALALLKQAIAGKLDWKARRQPKLEPLKLSKIEAMMSFTTAKGMVAQKAGKHYPAPMTAVKTIEAAAGLGR 266 (715)
T ss_pred cCH-HHHHHHHHHHHHHHhhcCCccccccCcccccccccchhHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHhcCCH
Confidence 997 89999999999999865 354 4466664 5677777789
Q ss_pred HHHHHHHHHHhhcccCCchHHhccccccccccC
Q psy14406 202 EEGLNQVDKESKNGCDRRNCNKGVSPERMSHDC 234 (275)
Q Consensus 202 ~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~s 234 (275)
++.++.+...+...+.++|+++++.++..++.+
T Consensus 267 ~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~~ 299 (715)
T PRK11730 267 DEALELEAKGFVKLAKTNVARALVGIFLNDQYV 299 (715)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 999999999888899999999999887776544
No 80
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=9.7e-40 Score=294.25 Aligned_cols=227 Identities=22% Similarity=0.281 Sum_probs=181.8
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCC-CCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVIS 79 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G-~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia 79 (275)
+|.++|+.++.|++|++|||+|.| ++||+|+|++++...... . ......+...+++++..+..+||||||
T Consensus 59 eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~-----~----~~~~~~~~~~~~~l~~~i~~~pKPVIA 129 (360)
T TIGR03200 59 AIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAG-----N----PQEYRQYMRLFNDMVSAILGCDKPVIC 129 (360)
T ss_pred HHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhccc-----C----hhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 478899999999999999999999 799999999987532110 0 011223444556778899999999999
Q ss_pred EECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCccc
Q psy14406 80 AVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSK 159 (275)
Q Consensus 80 ~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~ 159 (275)
+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|. .++++++++|++++|+||+++||||+
T Consensus 130 AVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~-~rA~~llltGe~~sA~EA~~~GLVd~ 208 (360)
T TIGR03200 130 RVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGC-EQAMVSGTLCEPWSAHKAKRLGIIMD 208 (360)
T ss_pred EECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCH-HHHHHHHHhCCcCcHHHHHHcCChhe
Confidence 99999999999999999999999999999999999999999999999999995 89999999999999999999999999
Q ss_pred ccCChhHH------------HHHHHHHHHHHhcCCHH--HHHHHHHHHHhhh--cCCHHHHHHHHHHHhhcccCCchHHh
Q psy14406 160 LYDDKESL------------LAGAIELGELIASKSPV--AVQGTKKTLVFSR--DHAVEEGLNQVDKESKNGCDRRNCNK 223 (275)
Q Consensus 160 vv~~~~~l------------~~~a~~~a~~la~~~~~--a~~~~K~~l~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~e 223 (275)
++|+ .++ ++.+.++++.+...++. +++..|..++... ...+++..+.....
T Consensus 209 VVp~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~l~~~~~~l~~~------------ 275 (360)
T TIGR03200 209 VVPA-LKVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELIKQGTIDLSLLDEAVEALCAK------------ 275 (360)
T ss_pred ecCc-hhcCcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHHHHHHhcccchHhHHHHHHHHHHHH------------
Confidence 9997 788 77888889999988877 9999999888642 11233332221111
Q ss_pred ccccccccccCCcchhhHHHHHhccCccChHHH
Q psy14406 224 GVSPERMSHDCPECLIGSIGVFHTLDRVDLNQC 256 (275)
Q Consensus 224 ~~~~~~~~~~sp~~~~v~~~~~~~~~~~~~~~~ 256 (275)
+.+..|.|+.-+++.++.-..+.|.+.
T Consensus 276 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (360)
T TIGR03200 276 ------LLNTFPECLTKSIEELRKPKLFAWNQN 302 (360)
T ss_pred ------HHHhchHHHHHHHHHhhhHHHHHHHhh
Confidence 234557777777777765544455443
No 81
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=1.6e-38 Score=314.30 Aligned_cols=220 Identities=25% Similarity=0.381 Sum_probs=191.2
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCC-CCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVIS 79 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G-~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia 79 (275)
||.+++++++.|+++++|||+|.+ ++||+|+|++++..... .+ ....+...++.++.+|.++||||||
T Consensus 38 ~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~-----~~------~~~~~~~~~~~~~~~i~~~~kPvIA 106 (708)
T PRK11154 38 QVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKT-----AQ------EAEALARQGQQLFAEIEALPIPVVA 106 (708)
T ss_pred HHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCC-----HH------HHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 478899999999999999999875 89999999998753211 00 0112334456678899999999999
Q ss_pred EECchhchHHHHHHHHCCEEEEeCC--ceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCc
Q psy14406 80 AVHGACIGGGMSLITAADIRYATKD--AWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLV 157 (275)
Q Consensus 80 ~v~G~a~GgG~~lal~~D~rva~~~--a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv 157 (275)
+|||+|+|||++|+++||+||++++ ++|++||+++|++|++|++++|++++|. .++++|++||++++|+||+++|||
T Consensus 107 aV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~-~~A~~llltG~~i~a~eA~~~GLv 185 (708)
T PRK11154 107 AIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGV-STALDMILTGKQLRAKQALKLGLV 185 (708)
T ss_pred EECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCH-HHHHHHHHhCCcCCHHHHHHCCCC
Confidence 9999999999999999999999987 4899999999999999999999999995 899999999999999999999999
Q ss_pred ccccCChhHHHHHHHHHHHH-------------HhcCCHH----------------------HHHHHHHHHHhhhcCCHH
Q psy14406 158 SKLYDDKESLLAGAIELGEL-------------IASKSPV----------------------AVQGTKKTLVFSRDHAVE 202 (275)
Q Consensus 158 ~~vv~~~~~l~~~a~~~a~~-------------la~~~~~----------------------a~~~~K~~l~~~~~~~~~ 202 (275)
|+++++ +++.+++.+++++ +++.+|. ++..+|+.++.....+++
T Consensus 186 ~~vv~~-~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~A~~~~k~~i~~~~~~~~~ 264 (708)
T PRK11154 186 DDVVPH-SILLEVAVELAKKGKPARRPLPVRERLLEGNPLGRALLFKQARKKTLAKTQGNYPAPERILDVVRTGLEKGMS 264 (708)
T ss_pred cEecCh-HHHHHHHHHHHHhcCCccCcCCchhhhcccCchhHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhcCCHH
Confidence 999997 8999999999988 4566554 788999999998888999
Q ss_pred HHHHHHHHHhhcccCCchHHhcccccccccc
Q psy14406 203 EGLNQVDKESKNGCDRRNCNKGVSPERMSHD 233 (275)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 233 (275)
+.+..+...+...+.++++++++.++...+.
T Consensus 265 ~~l~~E~~~~~~~~~s~~~~~~~~aF~~~~~ 295 (708)
T PRK11154 265 SGYEAEARAFGELAMTPESAALRSIFFATTE 295 (708)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9999999888888999999999877765543
No 82
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=2e-38 Score=313.15 Aligned_cols=219 Identities=26% Similarity=0.388 Sum_probs=188.8
Q ss_pred CHHHHHHHhhhCCCceEEEE-eeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Q psy14406 1 EIGECFDSLSENEECRVIIL-SAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVIS 79 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl-~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia 79 (275)
||.++|++++.|++|++||| +|.|++||+|+|++++..... .. ....+...++.++.++.++||||||
T Consensus 33 eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~-----~~------~~~~~~~~~~~~~~~l~~~~kPvIA 101 (699)
T TIGR02440 33 QVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQT-----AG------EAKALAQQGQVLFAELEALPIPVVA 101 (699)
T ss_pred HHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCC-----hh------HHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 57889999999999999986 678899999999998743211 00 1122344556778889999999999
Q ss_pred EECchhchHHHHHHHHCCEEEEeCC--ceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCc
Q psy14406 80 AVHGACIGGGMSLITAADIRYATKD--AWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLV 157 (275)
Q Consensus 80 ~v~G~a~GgG~~lal~~D~rva~~~--a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv 157 (275)
+|||+|+|||++|+++||+||++++ ++|++||+++|++|++|++++|++++|. .++++|++||++++++||+++|||
T Consensus 102 aVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~-~~A~~llltG~~~~a~eA~~~GLV 180 (699)
T TIGR02440 102 AIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGV-STALDMILTGKQLRAKQALKLGLV 180 (699)
T ss_pred EECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCH-HHHHHHHHcCCcCCHHHHHhCCCC
Confidence 9999999999999999999999986 7999999999999999999999999995 899999999999999999999999
Q ss_pred ccccCChhHHHHHHHHHHH-------------HHhcCCHHH----------------------HHHHHHHHHhhhcCCHH
Q psy14406 158 SKLYDDKESLLAGAIELGE-------------LIASKSPVA----------------------VQGTKKTLVFSRDHAVE 202 (275)
Q Consensus 158 ~~vv~~~~~l~~~a~~~a~-------------~la~~~~~a----------------------~~~~K~~l~~~~~~~~~ 202 (275)
|+++|+ +++.+++.++++ +++..+|.+ ...+|+.++.....+++
T Consensus 181 ~~vv~~-~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~k~~~~~~~~~~~a~~~~~~~i~~~~~~~~~ 259 (699)
T TIGR02440 181 DDVVPQ-SILLDTAVEMALKGKPIRKPLSLQERLLEGTPLGRALLFDQAAKKTAKKTQGNYPAAERILDVVRQGLAQGMQ 259 (699)
T ss_pred cEecCh-hHHHHHHHHHHHhCCCCCCCccchhhhcccCchhHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHhcCCHH
Confidence 999997 889999999997 577776655 44566678888888999
Q ss_pred HHHHHHHHHhhcccCCchHHhccccccccc
Q psy14406 203 EGLNQVDKESKNGCDRRNCNKGVSPERMSH 232 (275)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~ 232 (275)
++++.|...+...+.+++.++++.++...+
T Consensus 260 ~~l~~E~~~~~~~~~s~~~~~~~~~f~~~~ 289 (699)
T TIGR02440 260 KGLDAEARAFGELVMTPESAALRSIFFATT 289 (699)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999987766543
No 83
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=5e-38 Score=273.79 Aligned_cols=185 Identities=26% Similarity=0.371 Sum_probs=154.8
Q ss_pred CHHHHHHHhhhCCCce-EEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Q psy14406 1 EIGECFDSLSENEECR-VIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVIS 79 (275)
Q Consensus 1 el~~~l~~~~~d~~v~-~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia 79 (275)
||.+++++++.|++++ +||++|.|++||+|+|++++..... .. .....+...+++++.++.++||||||
T Consensus 30 eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~------~~----~~~~~~~~~~~~~~~~l~~~~kPvIA 99 (239)
T PLN02267 30 SIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGS------AP----SRLHLMVAKLRPLVADLISLPMPTIA 99 (239)
T ss_pred HHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhcccc------CH----HHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 5788999999999875 7778999999999999987642111 00 01122344566778899999999999
Q ss_pred EECchhchHHHHHHHHCCEEEEe-CCceEeccccccCcccCchhhhhhhHHhCcHHHH-HHHHhcCCCCCHHHHHHcCCc
Q psy14406 80 AVHGACIGGGMSLITAADIRYAT-KDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLV-NEIAFTARKIEAAEARECGLV 157 (275)
Q Consensus 80 ~v~G~a~GgG~~lal~~D~rva~-~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a-~~l~ltG~~~~a~eA~~~GLv 157 (275)
+|||+|+|||++|+++||+||++ ++++|++||+++|+.|+.+++++|++++|. .++ ++++++|++++|+||+++|||
T Consensus 100 aV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~-~~a~~~llltG~~~~a~eA~~~Glv 178 (239)
T PLN02267 100 AVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGS-PAARRDVLLRAAKLTAEEAVEMGIV 178 (239)
T ss_pred EECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcCh-HHHHHHHHHcCCcCCHHHHHHCCCc
Confidence 99999999999999999999998 568999999999997444457899999996 778 699999999999999999999
Q ss_pred ccccCChhHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhh
Q psy14406 158 SKLYDDKESLLAGAIELGELIASK--SPVAVQGTKKTLVFS 196 (275)
Q Consensus 158 ~~vv~~~~~l~~~a~~~a~~la~~--~~~a~~~~K~~l~~~ 196 (275)
|+++++.+++.+++.++|++|++. ++.++..+|+.++..
T Consensus 179 ~~vv~~~~~l~~~a~~~A~~ia~~~~~~~~~~~~k~~~~~~ 219 (239)
T PLN02267 179 DSAHDSAEETVEAAVRLGEELAARKWNGEVYASIRKSLLPE 219 (239)
T ss_pred ceecCCHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHH
Confidence 999985468999999999999987 668899999988654
No 84
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=1.7e-36 Score=299.64 Aligned_cols=222 Identities=22% Similarity=0.286 Sum_probs=178.9
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
||.++|++++.|+++++|||+|.|++||+|+|++++...... + . .....++...++++.+|.++||||||+
T Consensus 38 eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~--~--~-----~~~~~~~~~~~~~~~~i~~~pkPvIAa 108 (714)
T TIGR02437 38 SLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFAL--P--D-----AELIQWLLFANSIFNKLEDLPVPTVAA 108 (714)
T ss_pred HHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccC--C--H-----HHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 578899999999999999999999999999999988532100 0 0 011233444567788999999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|. .++++|++||++++|+||+++||||++
T Consensus 109 i~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~-~~A~~llltG~~~~A~eA~~~GLvd~v 187 (714)
T TIGR02437 109 INGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGA-DNALEWIASGKENRAEDALKVGAVDAV 187 (714)
T ss_pred ECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCH-HHHHHHHHcCCcCCHHHHHHCCCCcEe
Confidence 9999999999999999999999999999999999999999999999999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCC------------------HHH---HH------------------HHHHHHHhhhcCCH
Q psy14406 161 YDDKESLLAGAIELGELIASKS------------------PVA---VQ------------------GTKKTLVFSRDHAV 201 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~------------------~~a---~~------------------~~K~~l~~~~~~~~ 201 (275)
++. +++.+.+.++++++.... +.. .. ..-..+..+...++
T Consensus 188 v~~-~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pap~~~~~~v~~~~~~~~ 266 (714)
T TIGR02437 188 VTA-DKLGAAALQLLKDAINGKLDWKAKRQPKLEPLKLSKIEAMMSFTTAKGMVAQVAGPHYPAPMTAVKTIEKAARFGR 266 (714)
T ss_pred eCh-hHHHHHHHHHHHHHhhcCCcccccCCCCcccccccchHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcCCH
Confidence 997 889999999987743210 000 11 11122333444578
Q ss_pred HHHHHHHHHHhhcccCCchHHhcccccccccc
Q psy14406 202 EEGLNQVDKESKNGCDRRNCNKGVSPERMSHD 233 (275)
Q Consensus 202 ~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 233 (275)
++.++.|...+.....+++.++.+..|...|.
T Consensus 267 ~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r~ 298 (714)
T TIGR02437 267 DKALEIEAKGFVKLAKTSEAKALIGLFLNDQY 298 (714)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHhhhHh
Confidence 88999999998888899888877655555443
No 85
>KOG0016|consensus
Probab=100.00 E-value=2e-36 Score=256.99 Aligned_cols=223 Identities=23% Similarity=0.355 Sum_probs=197.2
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
++..+|+...+|+++..++++|.|+.||+|.|+..+..... .+..........+...+..+...+..+|||+||.
T Consensus 39 ~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~-----~d~~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~ 113 (266)
T KOG0016|consen 39 YIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALD-----DDANEESDKASKFVKNVSCFVNTFINFPKPLVAL 113 (266)
T ss_pred HHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCC-----CcccccchhhHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 46789999999999999999999999999999998865433 1222222333444444445788899999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+++|.|+.+.-.||+++|+|+++|..|++++|+.|+++++|.||+++|. ..+.+|++.|++++|+||++.|||+++
T Consensus 114 vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~imG~-~~A~E~ll~~~kltA~Ea~~~glVski 192 (266)
T KOG0016|consen 114 VNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIMGS-ASANEMLLFGEKLTAQEACEKGLVSKI 192 (266)
T ss_pred ecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhhch-hhHHHHHHhCCcccHHHHHhcCchhhh
Confidence 9999999999999999999999999999999999999999999999999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccc
Q psy14406 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERM 230 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~ 230 (275)
++. +.+.+.+...++++++.+|.+++..|++++......+..+.+.|.......|.++|..+.+.....
T Consensus 193 f~~-~tf~~~v~~~ikq~s~l~p~sl~~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~ 261 (266)
T KOG0016|consen 193 FPA-ETFNEEVLKKIKQYSKLSPESLLGMKKLLRSNIKEELIKANEEECNVLLKQWVSAECLARFKQYLS 261 (266)
T ss_pred cCh-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccChHHHHHHHHHhc
Confidence 998 999999999999999999999999999999988888999999999988889999888777655443
No 86
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=1.6e-34 Score=286.17 Aligned_cols=167 Identities=31% Similarity=0.506 Sum_probs=143.2
Q ss_pred CHHHHHHHhhhCCCceEE-EEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Q psy14406 1 EIGECFDSLSENEECRVI-ILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVIS 79 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~v-Vl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia 79 (275)
+|.++|++++.|++|++| |++|.|++||+|+||+++..... . .....+...++.++.++.++||||||
T Consensus 45 ~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~-----~------~~~~~~~~~~~~l~~~i~~~~kPvIA 113 (737)
T TIGR02441 45 EFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKT-----A------QEVTQLSQEGQEMFERIEKSQKPIVA 113 (737)
T ss_pred HHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCC-----h------HHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 478899999999999965 56999999999999998853111 0 01223445567788899999999999
Q ss_pred EECchhchHHHHHHHHCCEEEEeCC--ceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCc
Q psy14406 80 AVHGACIGGGMSLITAADIRYATKD--AWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLV 157 (275)
Q Consensus 80 ~v~G~a~GgG~~lal~~D~rva~~~--a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv 157 (275)
+|||+|+|||++|+++|||||++++ ++|++||+++|++|++|++++|+|++|. .++++|++||++++|+||+++|||
T Consensus 114 av~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~-~~A~~l~ltG~~i~a~eA~~~GLV 192 (737)
T TIGR02441 114 AISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGV-PAALDMMLTGKKIRADRAKKMGIV 192 (737)
T ss_pred EECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhCH-HHHHHHHHcCCcCCHHHHHHCCCC
Confidence 9999999999999999999999987 5899999999999999999999999996 899999999999999999999999
Q ss_pred ccccCCh------------hHHHHHHHHHHHHHh
Q psy14406 158 SKLYDDK------------ESLLAGAIELGELIA 179 (275)
Q Consensus 158 ~~vv~~~------------~~l~~~a~~~a~~la 179 (275)
|+++++. +++.+.+.+++..++
T Consensus 193 d~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~ 226 (737)
T TIGR02441 193 DQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLA 226 (737)
T ss_pred eEecCCcccccccchhhhHHHHHHHHHHHHHHhh
Confidence 9999851 457777777776654
No 87
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=100.00 E-value=1.3e-34 Score=244.47 Aligned_cols=165 Identities=43% Similarity=0.678 Sum_probs=150.0
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
+|.++++.++.|+++++|||+|.|+.||+|+|++++...... . ....++...+++++.++..+|||+||+
T Consensus 30 ~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~i~~~~~p~Ia~ 99 (195)
T cd06558 30 ELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDA-----G-----EEARAFIRELQELLRALLRLPKPVIAA 99 (195)
T ss_pred HHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccccc-----c-----hhHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 478899999999999999999999999999999998653321 0 024556778889999999999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|||+|+|+|+.++++||+||++++++|++||+++|++|+.|++++|++++|. ..+++++++|++++++||+++|||+++
T Consensus 100 v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~-~~a~~~~l~g~~~~a~ea~~~Glv~~~ 178 (195)
T cd06558 100 VNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGP-ARARELLLTGRRISAEEALELGLVDEV 178 (195)
T ss_pred ECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCH-HHHHHHHHcCCccCHHHHHHcCCCCee
Confidence 9999999999999999999999999999999999999999999999999995 899999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHH
Q psy14406 161 YDDKESLLAGAIELGEL 177 (275)
Q Consensus 161 v~~~~~l~~~a~~~a~~ 177 (275)
++. +++.+++.+++++
T Consensus 179 ~~~-~~l~~~a~~~a~~ 194 (195)
T cd06558 179 VPD-EELLAAALELARR 194 (195)
T ss_pred cCh-hHHHHHHHHHHhh
Confidence 998 8899999888865
No 88
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=1.4e-33 Score=269.37 Aligned_cols=172 Identities=21% Similarity=0.313 Sum_probs=144.2
Q ss_pred CHHHHHHHhh-hCCCceEEEEeeC-CCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHH-HHHHHHHHHhhcCCCcE
Q psy14406 1 EIGECFDSLS-ENEECRVIILSAA-GKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI-TTYQKSISSLERCPKPV 77 (275)
Q Consensus 1 el~~~l~~~~-~d~~v~~vVl~g~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~kP~ 77 (275)
||.++|++++ .|+++|+|||||. |++||+|+|++++..... .... ....+. .....+...+.++||||
T Consensus 52 eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~------~~~~---~~~~~~~~~~~~i~~~i~~~pkPv 122 (546)
T TIGR03222 52 ELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTH------AWKV---NFCKFTNETRNGIEDSSRHSGLKF 122 (546)
T ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhcccc------chhh---hHHHHHHHHHHHHHHHHHhCCCCE
Confidence 5788999998 7999999999987 499999999998742111 0000 001111 11223455677899999
Q ss_pred EEEECchhchHHHHHHHHCCEEEEeCC--ceEeccccc-cCcccCchhhhhhh--HHhCcHHHHHHHHhcCCCCCHHHHH
Q psy14406 78 ISAVHGACIGGGMSLITAADIRYATKD--AWFTLKEVD-IGLTADVGALQRLP--RIIGNQSLVNEIAFTARKIEAAEAR 152 (275)
Q Consensus 78 Ia~v~G~a~GgG~~lal~~D~rva~~~--a~f~~pe~~-~G~~p~~g~~~~l~--r~~G~~~~a~~l~ltG~~~~a~eA~ 152 (275)
||+|||+|+|||++|+++||+||++++ ++|++||++ +|++|++|++.+++ +++|+ .++++|++||++++|+||+
T Consensus 123 IAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~~gg~~~l~~~~~vg~-~~A~~llltG~~i~A~eA~ 201 (546)
T TIGR03222 123 LAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRRVRR-DHADIFCTIEEGVRGKRAK 201 (546)
T ss_pred EEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCccchhhhccccchhCH-HHHHHHHHcCCCccHHHHH
Confidence 999999999999999999999999986 799999997 99999999999997 68995 8999999999999999999
Q ss_pred HcCCcccccCChhHHHHHHHHHHHHHhcCCH
Q psy14406 153 ECGLVSKLYDDKESLLAGAIELGELIASKSP 183 (275)
Q Consensus 153 ~~GLv~~vv~~~~~l~~~a~~~a~~la~~~~ 183 (275)
++||||++||+ +++.+++.+++++|+..||
T Consensus 202 ~~GLV~~vv~~-~~l~~~a~~lA~~la~~~p 231 (546)
T TIGR03222 202 EWRLVDEVVKP-SQFDAAIAERAAELAAQSD 231 (546)
T ss_pred HcCCceEEeCh-HHHHHHHHHHHHHHHhCCC
Confidence 99999999997 8999999999999998876
No 89
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=100.00 E-value=2.6e-34 Score=237.62 Aligned_cols=222 Identities=24% Similarity=0.279 Sum_probs=183.8
Q ss_pred CHHHHHHHhhhCCCceEEEEeeC--C-CCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcE
Q psy14406 1 EIGECFDSLSENEECRVIILSAA--G-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPV 77 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~--G-~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~ 77 (275)
||.++|..+..|++|.+|||||. | .+||+|+|-+---....- .. ++.. ..+ ...++-+.|+.+||||
T Consensus 50 Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY-~~-d~~~---~rL-----nvLdlQrlIR~~PKpV 119 (282)
T COG0447 50 EMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGY-VD-DDGI---PRL-----NVLDLQRLIRTMPKPV 119 (282)
T ss_pred HHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCc-cC-CccC---ccc-----chhhHHHHHHhCCcce
Confidence 68899999999999999999975 6 999999998653221100 00 0000 001 1234456678889999
Q ss_pred EEEECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCc
Q psy14406 78 ISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLV 157 (275)
Q Consensus 78 Ia~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv 157 (275)
||.|+|+++|||-.|-+.||+.||+++|+|+....++|-|-++.++.+|.|.+| +.+++++-+.++.++|+||+++|+|
T Consensus 120 iA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VG-qKkArEIwfLcR~Y~A~eal~MGlV 198 (282)
T COG0447 120 IAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVG-QKKAREIWFLCRQYDAEEALDMGLV 198 (282)
T ss_pred EEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhh-hhhhHHhhhhhhhccHHHHHhcCce
Confidence 999999999999999999999999999999999999999998888999999999 5999999999999999999999999
Q ss_pred ccccCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccccccCC
Q psy14406 158 SKLYDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHDCP 235 (275)
Q Consensus 158 ~~vv~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~sp 235 (275)
|.|||- ++|++++.+|++++..++|.+++..|..+|..-+ .+....+...........+++.+||..+++.+|+..
T Consensus 199 N~Vvp~-~~LE~e~v~W~~E~l~kSP~AlR~LK~Afnad~D-GlaG~q~~ag~at~L~YmTdEa~EGr~AF~eKR~Pd 274 (282)
T COG0447 199 NTVVPH-ADLEKETVQWAREMLAKSPTALRMLKAAFNADCD-GLAGLQELAGNATLLYYMTDEAQEGRDAFLEKRKPD 274 (282)
T ss_pred eeeccH-HHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCc-hhhHHHHhcccceEEEEechhhhhhHHHHhhccCCC
Confidence 999997 9999999999999999999999999999987655 444444444444455568899999999999987654
No 90
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=8.2e-33 Score=264.78 Aligned_cols=173 Identities=22% Similarity=0.322 Sum_probs=144.6
Q ss_pred CHHHHHHHhh-hCCCceEEEEeeCC-CCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCcE
Q psy14406 1 EIGECFDSLS-ENEECRVIILSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLIT-TYQKSISSLERCPKPV 77 (275)
Q Consensus 1 el~~~l~~~~-~d~~v~~vVl~g~G-~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~kP~ 77 (275)
||.++|++++ +|++|++|||+|.+ ++||+|+|++.+..... .. . .....+.+ ....+...+.++||||
T Consensus 56 eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~------~~-~--~~~~~~~~~~~~~l~~~l~~~pkPv 126 (550)
T PRK08184 56 ELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSH------AW-K--VNFCKFTNETRNGIEDSSRHSGLKF 126 (550)
T ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhcccc------ch-h--hhHHHHHHHHHHHHHHHHHhCCCCE
Confidence 5788999998 78999999999985 99999999998743111 00 0 00011111 1122445677899999
Q ss_pred EEEECchhchHHHHHHHHCCEEEEeCC--ceEeccccc-cCcccCchhhhhhh--HHhCcHHHHHHHHhcCCCCCHHHHH
Q psy14406 78 ISAVHGACIGGGMSLITAADIRYATKD--AWFTLKEVD-IGLTADVGALQRLP--RIIGNQSLVNEIAFTARKIEAAEAR 152 (275)
Q Consensus 78 Ia~v~G~a~GgG~~lal~~D~rva~~~--a~f~~pe~~-~G~~p~~g~~~~l~--r~~G~~~~a~~l~ltG~~~~a~eA~ 152 (275)
||+|||+|+|||++|+++|||||++++ ++|++||++ +|++|++|++++++ +++|+ .++++|++||++++++||+
T Consensus 127 IAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P~~gg~~rl~~~~~vg~-~~A~~llltG~~i~AeeA~ 205 (550)
T PRK08184 127 IAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRVTDKRKVRR-DLADIFCTIEEGVRGKRAV 205 (550)
T ss_pred EEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCCCcchHHHhhhhhhcCH-HHHHHHHHhCCcccHHHHH
Confidence 999999999999999999999999987 899999997 99999999999998 77995 8999999999999999999
Q ss_pred HcCCcccccCChhHHHHHHHHHHHHHhcCCHH
Q psy14406 153 ECGLVSKLYDDKESLLAGAIELGELIASKSPV 184 (275)
Q Consensus 153 ~~GLv~~vv~~~~~l~~~a~~~a~~la~~~~~ 184 (275)
++||||++||+ +++.+++.+++++|+..+|.
T Consensus 206 ~~GLVd~vv~~-d~l~~~a~~~A~~ia~~~~~ 236 (550)
T PRK08184 206 DWRLVDEVVKP-SKFDAKVAERAAELAAASDR 236 (550)
T ss_pred HcCCccEeeCH-HHHHHHHHHHHHHHHhCCCC
Confidence 99999999997 89999999999999988753
No 91
>KOG1682|consensus
Probab=99.98 E-value=1.1e-31 Score=220.25 Aligned_cols=217 Identities=22% Similarity=0.307 Sum_probs=190.8
Q ss_pred HHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Q psy14406 2 IGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAV 81 (275)
Q Consensus 2 l~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~v 81 (275)
|...|....++.++|+|||+..|+.||+|.||+++..-.. . ..-.+.+....+++..|.++|.|+|+-|
T Consensus 64 Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g-----~------d~haevFqtc~dvmn~Irn~pVPVia~V 132 (287)
T KOG1682|consen 64 LQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPG-----S------DIHAEVFQTCTDVMNDIRNLPVPVIAKV 132 (287)
T ss_pred HHHHHhhcccccceeEEEEecCCccccccccHHHhhcCcc-----c------hHHHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 4455566666789999999999999999999999964221 1 1234567778889999999999999999
Q ss_pred CchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCCccccc
Q psy14406 82 HGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLY 161 (275)
Q Consensus 82 ~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~vv 161 (275)
||++..+|+.|...||++|++++++|..|.+++|+|...-+. -|.|.+. +..+.+|++||.+++++||+..|||+++|
T Consensus 133 NG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGv-AlaRavp-Rkva~~ML~Tg~Pi~~eeAl~sGlvskvV 210 (287)
T KOG1682|consen 133 NGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGV-ALARAVP-RKVAAYMLMTGLPITGEEALISGLVSKVV 210 (287)
T ss_pred cchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcch-hHhhhcc-hhHHHHHHHhCCCCchHHHHHhhhhhhcC
Confidence 999999999999999999999999999999999998876554 4888888 58999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccccc
Q psy14406 162 DDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSH 232 (275)
Q Consensus 162 ~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~ 232 (275)
|. ++++.++++++..|...++..+..-|.........+..+++.......-..+.-.|.+||+..+..+|
T Consensus 211 p~-~el~~e~~~i~~~i~~~srav~slgk~f~y~q~~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~~kr 280 (287)
T KOG1682|consen 211 PA-EELDKEIEEITNAIKAKSRAVISLGKEFYYKQLAMSQAEAFSAAQEKMCENFQLGDTKEGIASFFEKR 280 (287)
T ss_pred CH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccchHHHHHHHhccC
Confidence 98 99999999999999999999999999998888877888888877777777888899999999998876
No 92
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.85 E-value=6e-21 Score=159.13 Aligned_cols=140 Identities=14% Similarity=0.112 Sum_probs=112.1
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
+|.++|+++++|++|++|||++ ||.|+|+.... .+++++..+.+++||+||+
T Consensus 26 ~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~~~------------------------~~~~~i~~~~~~~kpVia~ 77 (177)
T cd07014 26 TTAAQIRDARLDPKVKAIVLRV----NSPGGSVTASE------------------------VIRAELAAARAAGKPVVAS 77 (177)
T ss_pred HHHHHHHHHhcCCCceEEEEEe----eCCCcCHHHHH------------------------HHHHHHHHHHhCCCCEEEE
Confidence 4778999999999999999997 68998875421 1234566677889999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhh--------hhhHHhCc-HHHHHHHHhcCCCCCHHHH
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQ--------RLPRIIGN-QSLVNEIAFTARKIEAAEA 151 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~--------~l~r~~G~-~~~a~~l~ltG~~~~a~eA 151 (275)
|||.|.|+|+.|+++||+++++++++|+.+.+..+..+...... .+++..|. ....++++..|..+++++|
T Consensus 78 v~G~a~g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A 157 (177)
T cd07014 78 GGGNAASGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDA 157 (177)
T ss_pred ECCchhHHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHH
Confidence 99999999999999999999999999999988776443322222 44455551 2567888999999999999
Q ss_pred HHcCCcccccCChhHHHH
Q psy14406 152 RECGLVSKLYDDKESLLA 169 (275)
Q Consensus 152 ~~~GLv~~vv~~~~~l~~ 169 (275)
++.||||++.+. +++.+
T Consensus 158 ~~~GLVD~v~~~-~e~~~ 174 (177)
T cd07014 158 KANGLVDSLGSF-DDAVA 174 (177)
T ss_pred HHcCCcccCCCH-HHHHH
Confidence 999999999986 66654
No 93
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.82 E-value=1.7e-19 Score=151.72 Aligned_cols=137 Identities=17% Similarity=0.198 Sum_probs=107.3
Q ss_pred HHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Q psy14406 2 IGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAV 81 (275)
Q Consensus 2 l~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~v 81 (275)
+.+.|+.+.+|+ ++.|+|.=. |.|+++..- ..++..|..+|||||++|
T Consensus 18 l~~~l~~a~~~~-~~~vvl~In----SpGG~v~~~---------------------------~~i~~~l~~~~kPvia~v 65 (187)
T cd07020 18 LERAIDQAEEGG-ADALIIELD----TPGGLLDST---------------------------REIVQAILASPVPVVVYV 65 (187)
T ss_pred HHHHHHHHHhCC-CCEEEEEEE----CCCCCHHHH---------------------------HHHHHHHHhCCCCEEEEE
Confidence 567788887655 788888722 556665432 123445667899999999
Q ss_pred C---chhchHHHHHHHHCCEEEEeCCceEeccccccCcccCc--------------hhhhhhhHHhCcH-HHHHHHHhcC
Q psy14406 82 H---GACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV--------------GALQRLPRIIGNQ-SLVNEIAFTA 143 (275)
Q Consensus 82 ~---G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~--------------g~~~~l~r~~G~~-~~a~~l~ltG 143 (275)
+ |+|+|||+.|+++||++|++++++|+++++..+..+.. +....+++..|.. ..+++++++|
T Consensus 66 ~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~a~~~l~~g 145 (187)
T cd07020 66 YPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRNAEWAEKAVRES 145 (187)
T ss_pred ecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 9 99999999999999999999999999999985544432 2355788888841 4788999999
Q ss_pred CCCCHHHHHHcCCcccccCChhHHHHH
Q psy14406 144 RKIEAAEARECGLVSKLYDDKESLLAG 170 (275)
Q Consensus 144 ~~~~a~eA~~~GLv~~vv~~~~~l~~~ 170 (275)
+.++++||+++||||+++++.+++...
T Consensus 146 ~~~~a~eA~~~Glvd~v~~~~~~~~~~ 172 (187)
T cd07020 146 LSLTAEEALKLGVIDLIAADLNELLKK 172 (187)
T ss_pred CeecHHHHHHcCCcccccCCHHHHHHH
Confidence 999999999999999999983356544
No 94
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.68 E-value=1.3e-16 Score=136.65 Aligned_cols=81 Identities=16% Similarity=0.226 Sum_probs=69.6
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
+|.++|+++..||+|++|||+ .||+|+|+..+. .+++.+..+..++||+||.
T Consensus 25 ~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~------------------------~~~~~l~~~~~~~kpVia~ 76 (211)
T cd07019 25 TTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASE------------------------VIRAELAAARAAGKPVVVS 76 (211)
T ss_pred HHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHH------------------------HHHHHHHHHHhCCCCEEEE
Confidence 478899999999999999998 699999996642 1123456677789999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEec
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTL 109 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~ 109 (275)
++|.|.|+|+.|+++||++++++++.|+.
T Consensus 77 v~g~a~s~gy~la~~aD~i~a~~~a~~gs 105 (211)
T cd07019 77 AGGAAASGGYWISTPANYIVANPSTLTGS 105 (211)
T ss_pred ECCeehhHHHHHHHhCCEEEEcCCCEEEE
Confidence 99999999999999999999999998873
No 95
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.55 E-value=1.1e-14 Score=141.63 Aligned_cols=153 Identities=17% Similarity=0.218 Sum_probs=115.8
Q ss_pred HHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Q psy14406 2 IGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAV 81 (275)
Q Consensus 2 l~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~v 81 (275)
+.+.|+.+..|++|++|||+-. |.|++.... ..+++.+..+...+||||+.+
T Consensus 334 ~~~~l~~a~~D~~VkaIVLrin----SpGGs~~as------------------------e~i~~~i~~~~~~gKPVva~~ 385 (584)
T TIGR00705 334 VAALLRVARSDPDIKAVVLRIN----SPGGSVFAS------------------------EIIRRELARAQARGKPVIVSM 385 (584)
T ss_pred HHHHHHHHhhCCCceEEEEEec----CCCCCHHHH------------------------HHHHHHHHHHHhCCCcEEEEE
Confidence 5678899999999999999964 333332111 011223445566689999999
Q ss_pred CchhchHHHHHHHHCCEEEEeCCceE------eccc------cccCcccCchhhhhhhH---------------------
Q psy14406 82 HGACIGGGMSLITAADIRYATKDAWF------TLKE------VDIGLTADVGALQRLPR--------------------- 128 (275)
Q Consensus 82 ~G~a~GgG~~lal~~D~rva~~~a~f------~~pe------~~~G~~p~~g~~~~l~r--------------------- 128 (275)
+|.|.+||+.++++||.+++++++.+ +++. .++|+.|+...+..+..
T Consensus 386 ~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~~ 465 (584)
T TIGR00705 386 GAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSVEA 465 (584)
T ss_pred CCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999977 6663 57999988776665543
Q ss_pred -------HhCcHHH-----HHHHHhcCCCCCHHHHHHcCCcccccCChhHHHHHHHHHHHHHhcC-CHHHHHH
Q psy14406 129 -------IIGNQSL-----VNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIASK-SPVAVQG 188 (275)
Q Consensus 129 -------~~G~~~~-----a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~-~~~a~~~ 188 (275)
.++. .+ ..+.+.+|+.++++||+++||||++.. + +++.+.|.+++.. ++..+..
T Consensus 466 ~y~~F~~~Va~-~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig~----~-~~Ai~~a~~la~~~~~~~v~~ 532 (584)
T TIGR00705 466 GYRRFLSVVSA-GRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALGG----L-DEAVAKAAKLAHCREQWSVEV 532 (584)
T ss_pred HHHHHHHHHHh-hCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCCC----H-HHHHHHHHHHcCCCCCceEEE
Confidence 5552 44 677889999999999999999999943 3 6777888888887 5544443
No 96
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.55 E-value=4.5e-14 Score=115.70 Aligned_cols=129 Identities=22% Similarity=0.249 Sum_probs=96.1
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
+|.+.|+.++.|++++.|+|+. .|.|+|+... ..+...+..++||+|+.
T Consensus 15 ~l~~~l~~a~~d~~~~~ivl~~----~s~Gg~~~~~---------------------------~~i~~~l~~~~kpvva~ 63 (161)
T cd00394 15 QLAAQIRFAEADNSVKAIVLEV----NTPGGRVDAG---------------------------MNIVDALQASRKPVIAY 63 (161)
T ss_pred HHHHHHHHHHhCCCCceEEEEE----ECCCcCHHHH---------------------------HHHHHHHHHhCCCEEEE
Confidence 3678899999999999999987 4778776432 12234455668999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCch--h-----------hhhhhHHh----Cc-HHHHHHHHhc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVG--A-----------LQRLPRII----GN-QSLVNEIAFT 142 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g--~-----------~~~l~r~~----G~-~~~a~~l~lt 142 (275)
++|.|.++|+.|+++||.|++.+++.|++..+..+.....+ . ...+...+ |. .....+++..
T Consensus 64 ~~g~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~ 143 (161)
T cd00394 64 VGGQAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEK 143 (161)
T ss_pred ECChhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcC
Confidence 99999999999999999999999999999888765543220 0 01111111 10 1234667778
Q ss_pred CCCCCHHHHHHcCCcccc
Q psy14406 143 ARKIEAAEARECGLVSKL 160 (275)
Q Consensus 143 G~~~~a~eA~~~GLv~~v 160 (275)
+..++++||++.||||++
T Consensus 144 ~~~~~a~eA~~~GLvD~i 161 (161)
T cd00394 144 DLVLTAQEALEYGLVDAL 161 (161)
T ss_pred CcEEcHHHHHHcCCcCcC
Confidence 999999999999999985
No 97
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.54 E-value=6.1e-14 Score=114.97 Aligned_cols=95 Identities=15% Similarity=0.184 Sum_probs=77.0
Q ss_pred HHHHhhcCCCcEEEEECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchh---------------hhhhhHHh
Q psy14406 66 SISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGA---------------LQRLPRII 130 (275)
Q Consensus 66 ~~~~l~~~~kP~Ia~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~---------------~~~l~r~~ 130 (275)
++..|..+|||+|+.++|.|.|+|+.|+++||+|+++++++|.++....+..+.... ...+.+..
T Consensus 50 i~~~i~~~~~pvi~~v~g~a~s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~ 129 (160)
T cd07016 50 IYNALKRHKGKVTVKIDGLAASAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKT 129 (160)
T ss_pred HHHHHHhcCCCEEEEEcchHHhHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355566779999999999999999999999999999999999998877666554321 23377778
Q ss_pred CcH-HHHHHHHhcCCCCCHHHHHHcCCcccc
Q psy14406 131 GNQ-SLVNEIAFTARKIEAAEARECGLVSKL 160 (275)
Q Consensus 131 G~~-~~a~~l~ltG~~~~a~eA~~~GLv~~v 160 (275)
|.. ....+++.++..++++||+++||||++
T Consensus 130 g~~~~~i~~~~~~~~~l~a~eA~~~GliD~v 160 (160)
T cd07016 130 GLSEEEISALMDAETWLTAQEAVELGFADEI 160 (160)
T ss_pred CCCHHHHHHHHhCCeECcHHHHHHcCCCCcC
Confidence 842 566667777778999999999999985
No 98
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.48 E-value=2.8e-13 Score=116.29 Aligned_cols=83 Identities=20% Similarity=0.264 Sum_probs=64.9
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
+|.++|+.+++|++|++|||+. +|.|+++... ..+.+.+..+.. +|||||.
T Consensus 29 ~l~~~l~~a~~d~~i~~Vvl~~----~s~gg~~~~~------------------------~~l~~~l~~~~~-~KpViA~ 79 (214)
T cd07022 29 GIAAAIRAALADPDVRAIVLDI----DSPGGEVAGV------------------------FELADAIRAARA-GKPIVAF 79 (214)
T ss_pred HHHHHHHHHhhCCCCcEEEEEE----eCCCCcHHHH------------------------HHHHHHHHHHhc-CCCEEEE
Confidence 4678999999999999999985 5667665322 112223344444 6999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEecccc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEV 112 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~ 112 (275)
++|.|.|+|+.|+++||++++++++.|+...+
T Consensus 80 v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~ 111 (214)
T cd07022 80 VNGLAASAAYWIASAADRIVVTPTAGVGSIGV 111 (214)
T ss_pred ECCchhhHHHHHHhcCCEEEEcCCCeEEeeeE
Confidence 99999999999999999999999999865543
No 99
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.48 E-value=2.5e-13 Score=116.04 Aligned_cols=135 Identities=19% Similarity=0.227 Sum_probs=95.0
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
+|.++|+.++.|+++++|||++ +|.|+|+.... .+++.+..+..++||+||+
T Consensus 21 ~l~~~l~~a~~d~~i~~ivl~~----~s~Gg~~~~~~------------------------~i~~~i~~~~~~~kpvia~ 72 (208)
T cd07023 21 SLIEQLRKAREDDSVKAVVLRI----NSPGGSVVASE------------------------EIYREIRRLRKAKKPVVAS 72 (208)
T ss_pred HHHHHHHHHHhCCCCcEEEEEE----ECCCCCHHHHH------------------------HHHHHHHHHHhcCCcEEEE
Confidence 4678999999999999999998 48898885421 1233456677789999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEecccc------------ccCcccCchhh------------------hhhhHHh
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEV------------DIGLTADVGAL------------------QRLPRII 130 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~------------~~G~~p~~g~~------------------~~l~r~~ 130 (275)
++|.|.|+|+.|+++||++++++++.|+...+ ++|+-+..-.+ ..+..++
T Consensus 73 v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l 152 (208)
T cd07023 73 MGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEERAILQALV 152 (208)
T ss_pred ECCcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999998864322 23333322110 0000111
Q ss_pred Cc------------H---HHHHHHHhcCCCCCHHHHHHcCCcccccCC
Q psy14406 131 GN------------Q---SLVNEIAFTARKIEAAEARECGLVSKLYDD 163 (275)
Q Consensus 131 G~------------~---~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~ 163 (275)
.. + .....-++.|..+++++|++.||||.+...
T Consensus 153 ~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~a~~A~~~gLiD~i~~~ 200 (208)
T cd07023 153 DDIYDQFVDVVAEGRGMSGERLDKLADGRVWTGRQALELGLVDELGGL 200 (208)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHhcCCcEEEHHHHHHcCCCcccCCH
Confidence 10 0 011233567889999999999999999764
No 100
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.46 E-value=1.2e-12 Score=111.87 Aligned_cols=138 Identities=19% Similarity=0.231 Sum_probs=94.4
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CcEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCP--KPVI 78 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--kP~I 78 (275)
+|.++|+.+.+|+++++|||+.. |.|+++.... ++...|..++ ||+|
T Consensus 17 ~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~~~---------------------------~l~~~i~~~~~~kpvi 65 (207)
T TIGR00706 17 DFDKKIKRIKDDKSIKALLLRIN----SPGGTVVASE---------------------------EIYEKLKKLKAKKPVV 65 (207)
T ss_pred HHHHHHHHHhhCCCccEEEEEec----CCCCCHHHHH---------------------------HHHHHHHHhcCCCCEE
Confidence 46788999999999999999984 7887775331 1223334444 9999
Q ss_pred EEECchhchHHHHHHHHCCEEEEeCCceEeccccc------------cCcccCc---------hhh---------hhhh-
Q psy14406 79 SAVHGACIGGGMSLITAADIRYATKDAWFTLKEVD------------IGLTADV---------GAL---------QRLP- 127 (275)
Q Consensus 79 a~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~------------~G~~p~~---------g~~---------~~l~- 127 (275)
|.++|.|.|+|+.|+++||.+++++++.|+...+. +|+-+.. +.. ..+.
T Consensus 66 a~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~ 145 (207)
T TIGR00706 66 ASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQN 145 (207)
T ss_pred EEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999987654332 2332110 000 0010
Q ss_pred ----------------HHhCcHHHHHHHHhcCCCCCHHHHHHcCCcccccCChhHHHHHHH
Q psy14406 128 ----------------RIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAI 172 (275)
Q Consensus 128 ----------------r~~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~~l~~~a~ 172 (275)
|-+.. .. .+-++.|+.+++++|++.||||++... +++.+...
T Consensus 146 ~l~~~~~~f~~~va~~R~~~~-~~-~~~~~~~~~~~~~~A~~~gLvD~i~~~-~~~~~~~~ 203 (207)
T TIGR00706 146 LVNESYEQFVQVVAKGRNLPV-ED-VKKFADGRVFTGRQALKLRLVDKLGTE-DDALKWLA 203 (207)
T ss_pred HHHHHHHHHHHHHHhcCCCCH-HH-HHHHhcCCcccHHHHHHcCCCcccCCH-HHHHHHHH
Confidence 11110 11 123467899999999999999999865 55554443
No 101
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.37 E-value=1.9e-12 Score=111.67 Aligned_cols=138 Identities=22% Similarity=0.253 Sum_probs=96.1
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
+|.+.|+++.+||+|++|||+..+..| ++.++.++ ++.+..+...+|||||.
T Consensus 33 ~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el---------------------------~~~i~~~~~~~kpVia~ 84 (222)
T cd07018 33 DLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEEL---------------------------RQALERFRASGKPVIAY 84 (222)
T ss_pred HHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHH---------------------------HHHHHHHHHhCCeEEEE
Confidence 467899999999999999999988766 55555443 22344455569999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEeccccc------------cCcccC---------chhhhh-----------hhH
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLKEVD------------IGLTAD---------VGALQR-----------LPR 128 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~------------~G~~p~---------~g~~~~-----------l~r 128 (275)
++| +.+||+.|+++||.+++.+.+.|+...+. +|+-+. .+..+. +..
T Consensus 85 ~~~-~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~ 163 (222)
T cd07018 85 ADG-YSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQA 163 (222)
T ss_pred eCC-CCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHH
Confidence 998 88999999999999999999999885432 232221 111110 000
Q ss_pred H-----------------hCcHHHHHHHHhcCCCCCHHHHHHcCCcccccCChhHHHHH
Q psy14406 129 I-----------------IGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAG 170 (275)
Q Consensus 129 ~-----------------~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~~l~~~ 170 (275)
. +. ... .+-+..|+.+++++|++.||||++... +++.+.
T Consensus 164 ~l~~~~~~f~~~Va~~R~~~-~~~-~~~~~~~~~~~~~~A~~~GLvD~i~~~-~e~~~~ 219 (222)
T cd07018 164 LLDSLWDQYLADVAASRGLS-PDA-LEALIDLGGDSAEEALEAGLVDGLAYR-DELEAR 219 (222)
T ss_pred HHHHHHHHHHHHHHHHcCCC-HHH-HHHHHHcCCcHHHHHHHCCCCCcCCcH-HHHHHH
Confidence 0 11 011 223445999999999999999999865 655543
No 102
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.35 E-value=1.4e-11 Score=102.67 Aligned_cols=135 Identities=17% Similarity=0.195 Sum_probs=91.6
Q ss_pred HHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Q psy14406 2 IGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAV 81 (275)
Q Consensus 2 l~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~v 81 (275)
|.+.|+++.+++ +..|||.=. |.|+++... ..++..|..+|+|+|+.|
T Consensus 18 l~~~l~~a~~~~-~~~ivl~in----spGG~v~~~---------------------------~~I~~~l~~~~~pvva~V 65 (178)
T cd07021 18 VERALKEAKEEG-ADAVVLDID----TPGGRVDSA---------------------------LEIVDLILNSPIPTIAYV 65 (178)
T ss_pred HHHHHHHHHhCC-CCeEEEEEE----CcCCCHHHH---------------------------HHHHHHHHhCCCCEEEEE
Confidence 567788888876 677777643 445555332 234566777899999999
Q ss_pred CchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCch----hhhh------hhHHhCc-HHHHHHHHhcC-------
Q psy14406 82 HGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVG----ALQR------LPRIIGN-QSLVNEIAFTA------- 143 (275)
Q Consensus 82 ~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g----~~~~------l~r~~G~-~~~a~~l~ltG------- 143 (275)
+|.|.++|+.|+++||++++++++.|+.+++-.+...+.- .... +...-|. ...+..|+-..
T Consensus 66 ~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~ 145 (178)
T cd07021 66 NDRAASAGALIALAADEIYMAPGATIGAAEPIPGDGNGAADEKVQSYWRAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVG 145 (178)
T ss_pred CCchHHHHHHHHHhCCeEEECCCCeEecCeeEcCCCccchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhhccccccc
Confidence 9999999999999999999999999998865422111000 0111 2222332 12334444333
Q ss_pred ------CCCCHHHHHHcCCcccccCChhHHH
Q psy14406 144 ------RKIEAAEARECGLVSKLYDDKESLL 168 (275)
Q Consensus 144 ------~~~~a~eA~~~GLv~~vv~~~~~l~ 168 (275)
-.++++||++.|++|.+.++.++|.
T Consensus 146 ~~~~~~l~lta~eA~~~g~~d~ia~~~~~ll 176 (178)
T cd07021 146 IKGGELLTLTADEALKVGYAEGIAGSLDELL 176 (178)
T ss_pred ccccceeeeCHHHHHHhCCeEEEECCHHHHh
Confidence 2699999999999999998755553
No 103
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.95 E-value=1.7e-08 Score=83.42 Aligned_cols=135 Identities=14% Similarity=0.178 Sum_probs=94.2
Q ss_pred HHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Q psy14406 2 IGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAV 81 (275)
Q Consensus 2 l~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~v 81 (275)
|.+.++.+.+| +++.|+|.=. |.|+++... ..++..|...++||++.|
T Consensus 18 l~~~l~~A~~~-~~~~i~l~in----SPGG~v~~~---------------------------~~I~~~i~~~~~pvv~~v 65 (172)
T cd07015 18 FDRYITIAEQD-NAEAIIIELD----TPGGRADAA---------------------------GNIVQRIQQSKIPVIIYV 65 (172)
T ss_pred HHHHHHHHhcC-CCCeEEEEEE----CCCCCHHHH---------------------------HHHHHHHHhcCcCEEEEE
Confidence 45677777654 5788888643 556655432 122444556799999999
Q ss_pred C---chhchHHHHHHHHCCEEEEeCCceEeccccccCcccC----c-h--h-hhh------hhHHhCc-HHHHHHHHhcC
Q psy14406 82 H---GACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTAD----V-G--A-LQR------LPRIIGN-QSLVNEIAFTA 143 (275)
Q Consensus 82 ~---G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~----~-g--~-~~~------l~r~~G~-~~~a~~l~ltG 143 (275)
+ |.|..+|..++++||.+++.+++.++...+-.|..+. . . . ... +.+.-|. ...+..++-..
T Consensus 66 ~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~ 145 (172)
T cd07015 66 YPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKD 145 (172)
T ss_pred ecCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhh
Confidence 9 9999999999999999999999999988875433220 0 0 0 111 2222331 13455666777
Q ss_pred CCCCHHHHHHcCCcccccCChhHHH
Q psy14406 144 RKIEAAEARECGLVSKLYDDKESLL 168 (275)
Q Consensus 144 ~~~~a~eA~~~GLv~~vv~~~~~l~ 168 (275)
..++++||++.|++|.++.+.++|.
T Consensus 146 ~~lta~EA~~~G~iD~ia~~~~~ll 170 (172)
T cd07015 146 LSLTPEEALKYGVIEVVARDINELL 170 (172)
T ss_pred cCcCHHHHHHcCCceeeeCCHHHHh
Confidence 8899999999999999998865554
No 104
>PRK10949 protease 4; Provisional
Probab=98.84 E-value=3.1e-08 Score=96.94 Aligned_cols=145 Identities=16% Similarity=0.184 Sum_probs=93.7
Q ss_pred HHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Q psy14406 2 IGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAV 81 (275)
Q Consensus 2 l~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~v 81 (275)
+.+.|+++.+|++||+|||+-. |.|+..... +.+++.+.++....||+|+.+
T Consensus 352 ~~~~l~~a~~D~~vkaVvLrIn----SpGGs~~as------------------------e~i~~~i~~~r~~gKPVvas~ 403 (618)
T PRK10949 352 TAAQIRDARLDPKVKAIVLRVN----SPGGSVTAS------------------------EVIRAELAAARAAGKPVVVSM 403 (618)
T ss_pred HHHHHHHHHhCCCCcEEEEEec----CCCCcHHHH------------------------HHHHHHHHHHHhcCCcEEEEE
Confidence 5678999999999999999965 334333111 112233444556689999999
Q ss_pred CchhchHHHHHHHHCCEEEEeCCceEecccc------------ccCcccCchhhhhh-----------------hHH---
Q psy14406 82 HGACIGGGMSLITAADIRYATKDAWFTLKEV------------DIGLTADVGALQRL-----------------PRI--- 129 (275)
Q Consensus 82 ~G~a~GgG~~lal~~D~rva~~~a~f~~pe~------------~~G~~p~~g~~~~l-----------------~r~--- 129 (275)
.+.|..||+.++++||.+++.+.+..+...+ ++|+-++...+..+ ...
T Consensus 404 ~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~~~~~~s~e~~~~~q~~ld~ 483 (618)
T PRK10949 404 GGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSITKALPPEFQQMMQLSIEN 483 (618)
T ss_pred CCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCccccCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999876554332 23333221111000 000
Q ss_pred --------------hCcHHHHHHHHhcCCCCCHHHHHHcCCcccccCChhHHHHHHHHHHHHHhcC
Q psy14406 130 --------------IGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIASK 181 (275)
Q Consensus 130 --------------~G~~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~ 181 (275)
+. ... .+-+..|+.+++.+|++.||||++-.- ++. .+.+++++..
T Consensus 484 ~y~~F~~~Va~~R~~~-~~~-v~~ia~Grv~tg~~A~~~GLVD~lG~~-~~a----i~~a~~~a~~ 542 (618)
T PRK10949 484 GYKRFITLVADSRHKT-PEQ-IDKIAQGHVWTGQDAKANGLVDSLGDF-DDA----VAKAAELAKL 542 (618)
T ss_pred HHHHHHHHHHhhCCCC-HHH-HHHHhcCCcccHHHHHHcCCCccCCCH-HHH----HHHHHHHcCC
Confidence 11 011 223568999999999999999999754 433 3444445544
No 105
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=98.74 E-value=1.1e-07 Score=78.05 Aligned_cols=128 Identities=15% Similarity=0.140 Sum_probs=81.1
Q ss_pred HHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Q psy14406 2 IGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAV 81 (275)
Q Consensus 2 l~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~v 81 (275)
+...|..++.++.++.|+|.=. |.|+++..- ..++..|..+++|+++.+
T Consensus 17 ~~~~L~~l~~~~~~~~i~l~In----SpGG~v~~~---------------------------~~i~~~i~~~~~~v~~~~ 65 (162)
T cd07013 17 FAAQLLFLGAVNPEKDIYLYIN----SPGGDVFAG---------------------------MAIYDTIKFIKADVVTII 65 (162)
T ss_pred HHHHHHHHhcCCCCCCEEEEEE----CCCCcHHHH---------------------------HHHHHHHHhcCCCceEEE
Confidence 5667888888877777777643 455554321 123445556689999999
Q ss_pred CchhchHHHHHHHHCC--EEEEeCCceEeccccccCcccCchhhh---------------hhhHHhCc-HHHHHHHHhcC
Q psy14406 82 HGACIGGGMSLITAAD--IRYATKDAWFTLKEVDIGLTADVGALQ---------------RLPRIIGN-QSLVNEIAFTA 143 (275)
Q Consensus 82 ~G~a~GgG~~lal~~D--~rva~~~a~f~~pe~~~G~~p~~g~~~---------------~l~r~~G~-~~~a~~l~ltG 143 (275)
.|.|.++|.-|+++|| .|++.++++|.+....-+......-.. .+.+..|. .....+++-.+
T Consensus 66 ~g~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~ 145 (162)
T cd07013 66 DGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERD 145 (162)
T ss_pred EeehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCC
Confidence 9999999999999999 688888888765433222111100000 11222221 12223445455
Q ss_pred CCCCHHHHHHcCCcccc
Q psy14406 144 RKIEAAEARECGLVSKL 160 (275)
Q Consensus 144 ~~~~a~eA~~~GLv~~v 160 (275)
.-++++||+++||||++
T Consensus 146 ~~~sa~eA~~~GliD~i 162 (162)
T cd07013 146 TWLSAREAVEYGFADTI 162 (162)
T ss_pred ccccHHHHHHcCCCCcC
Confidence 55699999999999985
No 106
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.60 E-value=3.2e-07 Score=83.23 Aligned_cols=129 Identities=21% Similarity=0.228 Sum_probs=90.3
Q ss_pred HHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Q psy14406 2 IGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAV 81 (275)
Q Consensus 2 l~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~v 81 (275)
+.+.|+.+..|++++.|||+=. |.|+.+..- ..+++.++++..-. |+++.|
T Consensus 85 ~~~~l~~~~~~~~vk~vvL~in----SPGG~v~as------------------------~~i~~~l~~l~~~~-PV~v~v 135 (317)
T COG0616 85 IEEILRAARADPSVKAVVLRIN----SPGGSVVAS------------------------ELIARALKRLRAKK-PVVVSV 135 (317)
T ss_pred HHHHHHHHhcCCCCceEEEEEE----CcCCchhHH------------------------HHHHHHHHHHhhcC-CEEEEE
Confidence 4578899999999999999854 455544321 11233344444433 999999
Q ss_pred CchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCc-----------------------------
Q psy14406 82 HGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGN----------------------------- 132 (275)
Q Consensus 82 ~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~----------------------------- 132 (275)
+++|+.||..++++||.+||+++|..|--.+..+. |+. ..+-...|.
T Consensus 136 ~~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~~-~~~---~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q 211 (317)
T COG0616 136 GGYAASGGYYIALAADKIVADPSSITGSIGVISGA-PNF---EELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQ 211 (317)
T ss_pred CCeecchhhhhhccCCEEEecCCceeeeceeEEec-CCH---HHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHH
Confidence 99999999999999999999999998866555542 222 122222221
Q ss_pred --------------------HHHHHHHHhcCCCCCHHHHHHcCCcccccCC
Q psy14406 133 --------------------QSLVNEIAFTARKIEAAEARECGLVSKLYDD 163 (275)
Q Consensus 133 --------------------~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~ 163 (275)
......-+.+|+.+++.+|++.||||++...
T Consensus 212 ~~~~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~ 262 (317)
T COG0616 212 KEIDETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGL 262 (317)
T ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCH
Confidence 0001235678999999999999999999865
No 107
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.53 E-value=2.7e-06 Score=74.69 Aligned_cols=93 Identities=19% Similarity=0.259 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhhcCCCcEEEEECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHH
Q psy14406 60 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEI 139 (275)
Q Consensus 60 ~~~~~~~~~~l~~~~kP~Ia~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l 139 (275)
...+.+++..+...+.|+|+.|-|.|.|||......||++++.+++.|+. .++-|....+-+--.....+.+.
T Consensus 122 ~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA~a~~~~D~v~m~~~a~~~v-------~~pe~~a~il~~~~~~a~~aa~~ 194 (256)
T PRK12319 122 GEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVADQVWMLENTMYAV-------LSPEGFASILWKDGSRATEAAEL 194 (256)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeCCcCcHHHHHhhcCCEEEEecCceEEE-------cCHHHHHHHHhcCcccHHHHHHH
Confidence 34556667788888999999999999999998888999999999988763 33333433333221111222333
Q ss_pred HhcCCCCCHHHHHHcCCcccccCC
Q psy14406 140 AFTARKIEAAEARECGLVSKLYDD 163 (275)
Q Consensus 140 ~ltG~~~~a~eA~~~GLv~~vv~~ 163 (275)
+ .+++.++++.|+||+|++.
T Consensus 195 ~----~~~a~~l~~~g~iD~ii~e 214 (256)
T PRK12319 195 M----KITAGELLEMGVVDKVIPE 214 (256)
T ss_pred c----CCCHHHHHHCCCCcEecCC
Confidence 3 7799999999999999974
No 108
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.50 E-value=1.2e-06 Score=74.47 Aligned_cols=97 Identities=16% Similarity=0.209 Sum_probs=61.2
Q ss_pred HHHhhcCCCcEEEEECchhchHHHHHHHHCC--EEEEeCCceEeccccccCcccCchh---------------hhhhhHH
Q psy14406 67 ISSLERCPKPVISAVHGACIGGGMSLITAAD--IRYATKDAWFTLKEVDIGLTADVGA---------------LQRLPRI 129 (275)
Q Consensus 67 ~~~l~~~~kP~Ia~v~G~a~GgG~~lal~~D--~rva~~~a~f~~pe~~~G~~p~~g~---------------~~~l~r~ 129 (275)
+..|...+.|+++.+.|.|.+.|..|+++++ .|++.++++|.+-...-|......- ...+...
T Consensus 82 ~d~i~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~ 161 (200)
T PRK00277 82 YDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEH 161 (200)
T ss_pred HHHHHhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566789999999999999999998753 5666666666554332111100000 0112333
Q ss_pred hCc-HHHHHHHHhcCCCCCHHHHHHcCCcccccCC
Q psy14406 130 IGN-QSLVNEIAFTARKIEAAEARECGLVSKLYDD 163 (275)
Q Consensus 130 ~G~-~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~ 163 (275)
.|. ......++-.+.-++|+||++.||||+|+.+
T Consensus 162 tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 162 TGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred HCcCHHHHHHHhhCCccccHHHHHHcCCccEEeec
Confidence 331 1233444555677999999999999999975
No 109
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.49 E-value=1.3e-06 Score=74.65 Aligned_cols=99 Identities=19% Similarity=0.270 Sum_probs=70.4
Q ss_pred HHHhhcCCCcEEEEECchhchHHHHHHHHCC--EEEEeCCceEecccccc-CcccCchh------------------hhh
Q psy14406 67 ISSLERCPKPVISAVHGACIGGGMSLITAAD--IRYATKDAWFTLKEVDI-GLTADVGA------------------LQR 125 (275)
Q Consensus 67 ~~~l~~~~kP~Ia~v~G~a~GgG~~lal~~D--~rva~~~a~f~~pe~~~-G~~p~~g~------------------~~~ 125 (275)
+..|..++.|+++.+.|.|.+.|.-|+++|| .|++.+++.|.+-.... |. ..|. ...
T Consensus 86 ~d~i~~~~~~v~t~~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~--~~G~a~d~~~~~~~l~~~~~~~~~~ 163 (207)
T PRK12553 86 YDTIQFIRPDVQTVCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGG--IRGQASDLEIQAREILRMRERLERI 163 (207)
T ss_pred HHHHHhcCCCcEEEEEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCC--CccCHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666889999999999999999999999 59999999988776542 21 1111 112
Q ss_pred hhHHhCc-HHHHHHHHhcCCCCCHHHHHHcCCcccccCChhHH
Q psy14406 126 LPRIIGN-QSLVNEIAFTARKIEAAEARECGLVSKLYDDKESL 167 (275)
Q Consensus 126 l~r~~G~-~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~~l 167 (275)
+....|. .....+++-.+.-++|+||++.||||+|+.+.++|
T Consensus 164 ya~~tg~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~~~dl 206 (207)
T PRK12553 164 LAEHTGQSVEKIRKDTDRDKWLTAEEAKDYGLVDQIITSYRDL 206 (207)
T ss_pred HHHHhCCCHHHHHHHHhcCccccHHHHHHcCCccEEcCchhhc
Confidence 3333332 12334455677889999999999999999874443
No 110
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.40 E-value=1.6e-06 Score=71.79 Aligned_cols=128 Identities=20% Similarity=0.222 Sum_probs=83.8
Q ss_pred HHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Q psy14406 2 IGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAV 81 (275)
Q Consensus 2 l~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~v 81 (275)
+...|..+..++..+.|+|.=. |.|+|+..- ..++..|...+.|+++.+
T Consensus 26 i~~~l~~~~~~~~~~~i~l~in----SpGG~v~~~---------------------------~~i~~~l~~~~~~v~t~~ 74 (171)
T cd07017 26 IIAQLLYLESEDPKKPIYLYIN----SPGGSVTAG---------------------------LAIYDTMQYIKPPVSTIC 74 (171)
T ss_pred HHHHHHHHHccCCCCceEEEEE----CCCCCHHHH---------------------------HHHHHHHHhcCCCEEEEE
Confidence 4566777777665555555422 445554321 122334455689999999
Q ss_pred CchhchHHHHHHHHCC--EEEEeCCceEeccccccCcccCchh---------------hhhhhHHhCc-HHHHHHHHhcC
Q psy14406 82 HGACIGGGMSLITAAD--IRYATKDAWFTLKEVDIGLTADVGA---------------LQRLPRIIGN-QSLVNEIAFTA 143 (275)
Q Consensus 82 ~G~a~GgG~~lal~~D--~rva~~~a~f~~pe~~~G~~p~~g~---------------~~~l~r~~G~-~~~a~~l~ltG 143 (275)
.|.|.++|.-+++++| .|++.++++|.+-+...+..-...- ...+....|. ......++-.+
T Consensus 75 ~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~ 154 (171)
T cd07017 75 LGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRD 154 (171)
T ss_pred EeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCC
Confidence 9999999999999999 7999999998887765544322100 0111222232 12334455577
Q ss_pred CCCCHHHHHHcCCcccc
Q psy14406 144 RKIEAAEARECGLVSKL 160 (275)
Q Consensus 144 ~~~~a~eA~~~GLv~~v 160 (275)
.-++++||+++||||+|
T Consensus 155 ~~lta~EA~e~GiiD~V 171 (171)
T cd07017 155 RYMSAEEAKEYGLIDKI 171 (171)
T ss_pred ccccHHHHHHcCCCccC
Confidence 78999999999999986
No 111
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.37 E-value=7.9e-06 Score=69.18 Aligned_cols=103 Identities=15% Similarity=0.163 Sum_probs=68.6
Q ss_pred HHHHhhcCCCcEEEEECchhchHHHHHHHHCCE--EEEeCCceEeccccccCcccCchhh---------------hhhhH
Q psy14406 66 SISSLERCPKPVISAVHGACIGGGMSLITAADI--RYATKDAWFTLKEVDIGLTADVGAL---------------QRLPR 128 (275)
Q Consensus 66 ~~~~l~~~~kP~Ia~v~G~a~GgG~~lal~~D~--rva~~~a~f~~pe~~~G~~p~~g~~---------------~~l~r 128 (275)
++..|..++.||++.+.|.|.+.|.-|+++||- |++.++++|-+-...-+......-. ..+..
T Consensus 73 I~d~i~~~~~~V~t~v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~ 152 (197)
T PRK14512 73 IFNMIRFVKPKVFTIGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAK 152 (197)
T ss_pred HHHHHHhCCCCEEEEEEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566678999999999999999999999985 9999999876554432221111100 01122
Q ss_pred HhCc-HHHHHHHHhcCCCCCHHHHHHcCCcccccCChhHHH
Q psy14406 129 IIGN-QSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLL 168 (275)
Q Consensus 129 ~~G~-~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~~l~ 168 (275)
..|. ......++-...-++++||+++||||+|+++.+++.
T Consensus 153 ~tg~~~~~i~~~~~~d~~lta~EA~~yGliD~I~~~~~~l~ 193 (197)
T PRK14512 153 ETGQELDKVEKDTDRDFWLDSSSAVKYGLVFEVVETRLELE 193 (197)
T ss_pred HhCcCHHHHHHhhhcCcccCHHHHHHcCCccEeecCcHHhH
Confidence 2221 122334444556799999999999999998755554
No 112
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.36 E-value=9.3e-06 Score=73.10 Aligned_cols=93 Identities=16% Similarity=0.153 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhhcCCCcEEEEECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHH
Q psy14406 60 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEI 139 (275)
Q Consensus 60 ~~~~~~~~~~l~~~~kP~Ia~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l 139 (275)
...+.+.+..+.....|+|+.|-|.+.|||......||++++.++++|+ +.++-|....|-+- ..++.+
T Consensus 178 ~~aiar~l~~~a~~~VP~IsVViGeggsGGAlal~~aD~V~m~e~a~~s-------VisPEg~a~Il~~d---~~~a~~- 246 (322)
T CHL00198 178 GEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGIGDSIMMLEYAVYT-------VATPEACAAILWKD---SKKSLD- 246 (322)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEeCcccHHHHHhhhcCCeEEEeCCeEEE-------ecCHHHHHHHHhcc---hhhHHH-
Confidence 3445556667788899999999999988887666679999999999877 44444444444333 233333
Q ss_pred HhcCCCCCHHHHHHcCCcccccCC
Q psy14406 140 AFTARKIEAAEARECGLVSKLYDD 163 (275)
Q Consensus 140 ~ltG~~~~a~eA~~~GLv~~vv~~ 163 (275)
+-..-++|+.+.++.|+||+|+|.
T Consensus 247 aA~~~~ita~dL~~~giiD~ii~E 270 (322)
T CHL00198 247 AAEALKITSEDLKVLGIIDEIIPE 270 (322)
T ss_pred HHHHcCCCHHHHHhCCCCeEeccC
Confidence 335578999999999999999974
No 113
>PRK11778 putative inner membrane peptidase; Provisional
Probab=98.35 E-value=6.6e-06 Score=74.60 Aligned_cols=103 Identities=19% Similarity=0.184 Sum_probs=69.1
Q ss_pred HHHhhcCCCcEEEEECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhh-----------------------
Q psy14406 67 ISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGAL----------------------- 123 (275)
Q Consensus 67 ~~~l~~~~kP~Ia~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~----------------------- 123 (275)
+.++....||+|+.+++.|..||+.++++||.+++.+.+.++...+-.. .|.....
T Consensus 147 l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~-~~~~~~lLeKlGI~~evi~aG~yK~a~~pf 225 (330)
T PRK11778 147 LQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQ-IPNFHRLLKKHDIDVELHTAGEYKRTLTLF 225 (330)
T ss_pred HHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeee-ccCHHHHHHHCCCceEEEEecCccCCCCCC
Confidence 3445666899999999999999999999999999999988776554322 1221110
Q ss_pred --------hhhhHH-----------hCc-H-HHHHHHHhcCCCCCHHHHHHcCCcccccCChhHHHHHH
Q psy14406 124 --------QRLPRI-----------IGN-Q-SLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGA 171 (275)
Q Consensus 124 --------~~l~r~-----------~G~-~-~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~~l~~~a 171 (275)
..+... +-. + ....+-+.+|+.+++++|++.||||++... +++...+
T Consensus 226 ~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~-dd~i~~~ 293 (330)
T PRK11778 226 GENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTS-DDYLLEL 293 (330)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCH-HHHHHHH
Confidence 000000 000 0 011234568999999999999999999876 5554433
No 114
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.26 E-value=2.2e-05 Score=70.79 Aligned_cols=93 Identities=22% Similarity=0.282 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhhcCCCcEEEEECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHH
Q psy14406 60 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEI 139 (275)
Q Consensus 60 ~~~~~~~~~~l~~~~kP~Ia~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l 139 (275)
.+.+.+++..+.....|+|+.|-|.+.|||......||++++.+++.|+ +.++-|....|-+-- .++.+.
T Consensus 175 ~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAla~~~aD~v~m~~~A~~s-------visPEg~a~Il~~~~---~~a~~a 244 (319)
T PRK05724 175 SEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVGDRVLMLEYSTYS-------VISPEGCASILWKDA---SKAPEA 244 (319)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeCCccHHHHHHHhccCeeeeecCceEe-------ecCHHHHHHHHhcCc---hhHHHH
Confidence 4455667788889999999999999988887666679999999998776 455555544444432 233333
Q ss_pred HhcCCCCCHHHHHHcCCcccccCC
Q psy14406 140 AFTARKIEAAEARECGLVSKLYDD 163 (275)
Q Consensus 140 ~ltG~~~~a~eA~~~GLv~~vv~~ 163 (275)
. ....+++.++++.|+||.|++.
T Consensus 245 a-e~~~ita~~l~~~g~iD~II~E 267 (319)
T PRK05724 245 A-EAMKITAQDLKELGIIDEIIPE 267 (319)
T ss_pred H-HHcCCCHHHHHHCCCceEeccC
Confidence 3 2567999999999999999974
No 115
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.26 E-value=3.5e-05 Score=69.38 Aligned_cols=93 Identities=23% Similarity=0.267 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhhcCCCcEEEEECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHH
Q psy14406 60 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEI 139 (275)
Q Consensus 60 ~~~~~~~~~~l~~~~kP~Ia~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l 139 (275)
.+.+.+.+..+.....|+|+.|-|.|.|||......||++++.+++.++ +.++-|....|-+-- .++.+.
T Consensus 175 ~~aia~~l~a~s~~~VP~IsVViGeggsGGAla~~~aD~v~m~~~a~~s-------VisPEg~a~Il~kd~---~~a~~a 244 (316)
T TIGR00513 175 SEAIARNLREMARLGVPVICTVIGEGGSGGALAIGVGDKVNMLEYSTYS-------VISPEGCAAILWKDA---SKAPKA 244 (316)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEecccccHHHhhhccCCEEEEecCceEE-------ecCHHHHHHHhccch---hhHHHH
Confidence 3445666777888899999999999988877666679999999999776 444444444443321 122222
Q ss_pred HhcCCCCCHHHHHHcCCcccccCC
Q psy14406 140 AFTARKIEAAEARECGLVSKLYDD 163 (275)
Q Consensus 140 ~ltG~~~~a~eA~~~GLv~~vv~~ 163 (275)
. .-..+++.++++.|+||.|+|.
T Consensus 245 a-e~~~~ta~~l~~~G~iD~II~e 267 (316)
T TIGR00513 245 A-EAMKITAPDLKELGLIDSIIPE 267 (316)
T ss_pred H-HHccCCHHHHHHCCCCeEeccC
Confidence 2 2367789999999999999974
No 116
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.25 E-value=2.3e-05 Score=72.40 Aligned_cols=93 Identities=18% Similarity=0.187 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhhcCCCcEEEEECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHH
Q psy14406 60 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEI 139 (275)
Q Consensus 60 ~~~~~~~~~~l~~~~kP~Ia~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l 139 (275)
...+...+..+.....|+|+.|-|.+.+||......||++++.+++.++ +.++-|....|-+--.....+.+
T Consensus 245 a~aIAr~l~ams~l~VPiISVViGeGgSGGAlalg~aD~VlMle~A~ys-------VisPEgaAsILwkd~~~A~eAAe- 316 (431)
T PLN03230 245 GEAIAFNLREMFGLRVPIIATVIGEGGSGGALAIGCGNRMLMMENAVYY-------VASPEACAAILWKSAAAAPKAAE- 316 (431)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHHhhcCCEEEEecCCEEE-------ecCHHHHHHHHhccccchHHHHH-
Confidence 3445666778889999999999999966666555578999999998766 33333333333322111122222
Q ss_pred HhcCCCCCHHHHHHcCCcccccCC
Q psy14406 140 AFTARKIEAAEARECGLVSKLYDD 163 (275)
Q Consensus 140 ~ltG~~~~a~eA~~~GLv~~vv~~ 163 (275)
.-.+++.++++.|+||+|++.
T Consensus 317 ---alkitA~dL~~~GiID~II~E 337 (431)
T PLN03230 317 ---ALRITAAELVKLGVVDEIVPE 337 (431)
T ss_pred ---HcCCCHHHHHhCCCCeEeccC
Confidence 448999999999999999974
No 117
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=98.15 E-value=5.6e-05 Score=74.14 Aligned_cols=121 Identities=13% Similarity=0.084 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhhcCCCcEEEEECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHH
Q psy14406 60 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEI 139 (275)
Q Consensus 60 ~~~~~~~~~~l~~~~kP~Ia~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l 139 (275)
...+.+.+..+.....|+|++|-|.|.|||......||++++.++++|+ +.++-|+...|-+-.. ++. -
T Consensus 266 ~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~aD~VlMle~A~~s-------VisPEgaAsILwkd~~---~A~-e 334 (762)
T PLN03229 266 GEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCANKLLMLENAVFY-------VASPEACAAILWKSAK---AAP-K 334 (762)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcCCEEEEecCCeEE-------ecCHHHHHHHHhcCcc---cHH-H
Confidence 3455666777888999999999999998888888889999999998765 3444444444433322 232 3
Q ss_pred HhcCCCCCHHHHHHcCCcccccCCh------------hHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy14406 140 AFTARKIEAAEARECGLVSKLYDDK------------ESLLAGAIELGELIASKSPVAVQGTKK 191 (275)
Q Consensus 140 ~ltG~~~~a~eA~~~GLv~~vv~~~------------~~l~~~a~~~a~~la~~~~~a~~~~K~ 191 (275)
+-..-.+|+.+.++.|+||+|+|.. ..+..........+...++..+...+.
T Consensus 335 AAe~lkiTa~dL~~lGiiD~IIpEp~ggAh~d~~~~~~~l~~~i~~~L~~l~~~~~~~l~~~R~ 398 (762)
T PLN03229 335 AAEKLRITAQELCRLQIADGIIPEPLGGAHADPSWTSQQIKIAINENMDELGKMDTEELLKHRM 398 (762)
T ss_pred HHHHcCCCHHHHHhCCCCeeeccCCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4456789999999999999999742 122233344445566666665554443
No 118
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=98.13 E-value=5.8e-06 Score=69.02 Aligned_cols=98 Identities=19% Similarity=0.326 Sum_probs=66.9
Q ss_pred HHHHhhcCCCcEEEEECchhchHHHHHHHHCCE--EEEeCCceEeccccccCcccCchhh---------------hhhhH
Q psy14406 66 SISSLERCPKPVISAVHGACIGGGMSLITAADI--RYATKDAWFTLKEVDIGLTADVGAL---------------QRLPR 128 (275)
Q Consensus 66 ~~~~l~~~~kP~Ia~v~G~a~GgG~~lal~~D~--rva~~~a~f~~pe~~~G~~p~~g~~---------------~~l~r 128 (275)
++..|..++.|+++.+.|.|.+.|.-++++|+. |++.+++.|.+-+...+......-. ..+..
T Consensus 66 i~~~i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~ 145 (182)
T PF00574_consen 66 IYDAIRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAE 145 (182)
T ss_dssp HHHHHHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 355667779999999999999999999999999 8999999999888865554311111 11222
Q ss_pred HhCc-HHHHHHHHhcCCCCCHHHHHHcCCcccccCC
Q psy14406 129 IIGN-QSLVNEIAFTARKIEAAEARECGLVSKLYDD 163 (275)
Q Consensus 129 ~~G~-~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~ 163 (275)
..|. .....+++-...-++++||+++||||+|+.+
T Consensus 146 ~tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 146 RTGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp HHTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred HhCCcHHHHHHHHhCCccccHHHHHHcCCCCEeccC
Confidence 2221 1222334444455899999999999999864
No 119
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=98.09 E-value=5e-05 Score=64.00 Aligned_cols=96 Identities=16% Similarity=0.207 Sum_probs=64.2
Q ss_pred HHHhhcCCCcEEEEECchhchHHHHHHHHCC--EEEEeCCceEeccccccCcccCchhh---------------hhhhHH
Q psy14406 67 ISSLERCPKPVISAVHGACIGGGMSLITAAD--IRYATKDAWFTLKEVDIGLTADVGAL---------------QRLPRI 129 (275)
Q Consensus 67 ~~~l~~~~kP~Ia~v~G~a~GgG~~lal~~D--~rva~~~a~f~~pe~~~G~~p~~g~~---------------~~l~r~ 129 (275)
+..|...+.|+...+.|.|.+.|.-|++++| .|++.++++|.+-...-|......-. ..+.+.
T Consensus 77 ~d~l~~~~~~v~t~~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~ 156 (191)
T TIGR00493 77 YDTMQFIKPDVSTICIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANH 156 (191)
T ss_pred HHHHHhcCCCEEEEEEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555667878888999999999998766 69999999988866543321111111 112333
Q ss_pred hCc-HHHHHHHHhcCCCCCHHHHHHcCCcccccC
Q psy14406 130 IGN-QSLVNEIAFTARKIEAAEARECGLVSKLYD 162 (275)
Q Consensus 130 ~G~-~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~ 162 (275)
.|. .....+++-.+.-++|+||+++||||+++.
T Consensus 157 tg~~~~~i~~~~~~~~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 157 TGQSLEQIEKDTERDFFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred HCcCHHHHHHHhhCCccCcHHHHHHcCCccEEec
Confidence 332 123445556677799999999999999874
No 120
>KOG1683|consensus
Probab=98.05 E-value=7.7e-07 Score=80.45 Aligned_cols=159 Identities=17% Similarity=0.123 Sum_probs=115.5
Q ss_pred HHHHHHHhhhCCCceEEEEeeCC-CCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 2 IGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 2 l~~~l~~~~~d~~v~~vVl~g~G-~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
|..-++++..+..+++...|+.. +.|++|.|..+...... +.....+-.+++++.+.++++.|+.++
T Consensus 87 l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h------------~fspa~~m~LlEii~~~~tS~~~iA~A 154 (380)
T KOG1683|consen 87 LFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMH------------FFSPAHWMQLLEIILALYTSKLTIATA 154 (380)
T ss_pred HHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhcccc------------ccCHHHHHHHHHHHHhcCCCchHHHHH
Confidence 44556777788888999999988 99999999988754322 223344567789999999999999999
Q ss_pred ECchhchHH--HHHHHHCCEEEEeCC--ceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHHHcCC
Q psy14406 81 VHGACIGGG--MSLITAADIRYATKD--AWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGL 156 (275)
Q Consensus 81 v~G~a~GgG--~~lal~~D~rva~~~--a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~~~GL 156 (275)
+||++--|+ +-+..+|+|+|...- -..+..+...++.-+-.-.-.+...+|. ..+-.-+--+.-++-.||++-|+
T Consensus 155 in~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf-~~g~~~L~d~~gfdv~eal~~gl 233 (380)
T KOG1683|consen 155 INGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGF-RVGERALADGVGFDVAEALAVGL 233 (380)
T ss_pred HhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCc-cccHHHHhhccCccHHHHHhhcc
Confidence 999999998 889999999999843 3346777776633322222233334442 33435566788899999999999
Q ss_pred cccccCC-hhHHHHHHHH
Q psy14406 157 VSKLYDD-KESLLAGAIE 173 (275)
Q Consensus 157 v~~vv~~-~~~l~~~a~~ 173 (275)
++.+.+. .+++.+....
T Consensus 234 ~~~~~~r~~eel~~~~~~ 251 (380)
T KOG1683|consen 234 GDEIGPRIEEELLEKGRA 251 (380)
T ss_pred chhccchhHHHHHHHHhh
Confidence 9999984 3555554433
No 121
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=98.03 E-value=8.8e-05 Score=62.92 Aligned_cols=98 Identities=12% Similarity=0.118 Sum_probs=68.1
Q ss_pred HHHHhhcCCCcEEEEECchhchHHHHHHHHCC--EEEEeCCceEeccccccCc-ccCchh---------------hhhhh
Q psy14406 66 SISSLERCPKPVISAVHGACIGGGMSLITAAD--IRYATKDAWFTLKEVDIGL-TADVGA---------------LQRLP 127 (275)
Q Consensus 66 ~~~~l~~~~kP~Ia~v~G~a~GgG~~lal~~D--~rva~~~a~f~~pe~~~G~-~p~~g~---------------~~~l~ 127 (275)
++..|...+.||...+.|.|.+.|.-|++++| .|++.++++|.+-....|+ .....- ...+.
T Consensus 80 Iyd~m~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya 159 (200)
T CHL00028 80 IYDTMQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYA 159 (200)
T ss_pred HHHHHHhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667899999999999999999999999 6999999998877765442 111100 11122
Q ss_pred HHhCc-HHHHHHHHhcCCCCCHHHHHHcCCcccccCC
Q psy14406 128 RIIGN-QSLVNEIAFTARKIEAAEARECGLVSKLYDD 163 (275)
Q Consensus 128 r~~G~-~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~ 163 (275)
...|. .....+++-...-++|+||+++||||+|+.+
T Consensus 160 ~~Tg~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~~ 196 (200)
T CHL00028 160 QRTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAVN 196 (200)
T ss_pred HHHCcCHHHHHHHhhcCccCCHHHHHHcCCCcEEeec
Confidence 22331 1122444455566999999999999999875
No 122
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=97.96 E-value=6.8e-06 Score=63.84 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHhhcccCCchHHhccccccccccCCcchhhHHHHHhccCccChHHHHHHH
Q psy14406 200 AVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHDCPECLIGSIGVFHTLDRVDLNQCDEDL 260 (275)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~sp~~~~v~~~~~~~~~~~~~~~~~~~~ 260 (275)
++++.++.... ..+.+..-+...++++||+|++||++++++|+.+|+++||+..
T Consensus 17 s~~eI~~~L~~-------~~~~~a~~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E 70 (118)
T PF13766_consen 17 SVEEIIEALEA-------DGDEWAQKTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRME 70 (118)
T ss_dssp SHHHHHHHHHH-------HS-HHHHHHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHH
T ss_pred CHHHHHHHHHc-------cCcHHHHHHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHH
Confidence 77777777665 2233466788889999999999999999999999999999753
No 123
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=97.94 E-value=1.9e-05 Score=64.22 Aligned_cols=102 Identities=23% Similarity=0.265 Sum_probs=61.9
Q ss_pred hcCCCcEEEEECchhchHHHHHHHHCCEEEEeCCceEeccccc------------cCcc---------cCch-----h--
Q psy14406 71 ERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVD------------IGLT---------ADVG-----A-- 122 (275)
Q Consensus 71 ~~~~kP~Ia~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~------------~G~~---------p~~g-----~-- 122 (275)
....||+||.++|.+..+++.|+.+||-+++.+.+.++...+. +|+- -+.+ .
T Consensus 3 ~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s~ 82 (154)
T PF01343_consen 3 KASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMSE 82 (154)
T ss_dssp HHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--H
T ss_pred cccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCCH
Confidence 4568999999999999999999999999999999887765443 2321 1111 0
Q ss_pred --hhhhhHH-----------h----CcHHHHHHHHhcCCCCCHHHHHHcCCcccccCChhHHHHHHHH
Q psy14406 123 --LQRLPRI-----------I----GNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIE 173 (275)
Q Consensus 123 --~~~l~r~-----------~----G~~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~ 173 (275)
-..+.+. + |......+-+..|..+++++|++.||||++-.. +++...+.+
T Consensus 83 ~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~-~~~~~~l~~ 149 (154)
T PF01343_consen 83 EERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTF-DEAIARLAK 149 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCH-HHHHHHHHH
Confidence 0000000 0 000011223578999999999999999999764 666555443
No 124
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=97.83 E-value=0.00018 Score=70.60 Aligned_cols=82 Identities=15% Similarity=0.173 Sum_probs=60.5
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
++.++++.+.+|+.|++|||.-.+ +.|+++..+ ..+++.+..+....|||||.
T Consensus 80 ~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~~~~------------------------~ei~~ai~~fk~sgKpVvA~ 132 (584)
T TIGR00705 80 DIVNAIRQAADDRRIEGLVFDLSN---FSGWDSPHL------------------------VEIGSALSEFKDSGKPVYAY 132 (584)
T ss_pred HHHHHHHHHhcCCCceEEEEEccC---CCCCCHHHH------------------------HHHHHHHHHHHhcCCeEEEE
Confidence 367889999999999999999753 224333221 12233345556668999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCCceEecc
Q psy14406 81 VHGACIGGGMSLITAADIRYATKDAWFTLK 110 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~a~f~~p 110 (275)
.++++ -+|+.|+.+||-+++.+.+.+++.
T Consensus 133 ~~~~~-s~~YylAs~AD~I~~~p~G~v~~~ 161 (584)
T TIGR00705 133 GTNYS-QGQYYLASFADEIILNPMGSVDLH 161 (584)
T ss_pred Ecccc-chhhhhhhhCCEEEECCCceEEee
Confidence 98875 678999999999999998777553
No 125
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=97.83 E-value=0.00038 Score=61.65 Aligned_cols=84 Identities=18% Similarity=0.180 Sum_probs=59.3
Q ss_pred HHhhcCCCcEEEEECch--hchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCc-HHHHHHHHhcCC
Q psy14406 68 SSLERCPKPVISAVHGA--CIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGN-QSLVNEIAFTAR 144 (275)
Q Consensus 68 ~~l~~~~kP~Ia~v~G~--a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~-~~~a~~l~ltG~ 144 (275)
..+... .|+|+.+-|+ |+||+..++..||++|+++++++++... ...-...|. .-...+-.|..+
T Consensus 131 ~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP-----------~VIe~~~G~e~~~~~d~~l~~~ 198 (274)
T TIGR03133 131 LDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGP-----------EVIEQEAGVEEFDSRDRALVWR 198 (274)
T ss_pred HHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCH-----------HHHHHhcCCCccCHHHhccccc
Confidence 334444 9999999999 8999999999999999999987765221 111112221 011234445556
Q ss_pred CCCHHHHHHcCCcccccCC
Q psy14406 145 KIEAAEARECGLVSKLYDD 163 (275)
Q Consensus 145 ~~~a~eA~~~GLv~~vv~~ 163 (275)
.+.++.....|++|.++++
T Consensus 199 ~lGG~~~~~sG~~D~~v~d 217 (274)
T TIGR03133 199 TTGGKHRFLSGDADVLVED 217 (274)
T ss_pred ccchHhHhhcccceEEeCC
Confidence 6777888899999999986
No 126
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=97.82 E-value=0.00056 Score=61.31 Aligned_cols=85 Identities=20% Similarity=0.259 Sum_probs=55.9
Q ss_pred HHhhcCCCcEEEEECch--hchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCc-HHHHHHHHhcCC
Q psy14406 68 SSLERCPKPVISAVHGA--CIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGN-QSLVNEIAFTAR 144 (275)
Q Consensus 68 ~~l~~~~kP~Ia~v~G~--a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~-~~~a~~l~ltG~ 144 (275)
..+... .|+|+.+-|. |+||+...+..||++|+++++++++.... ..-...|. .-...+..+..+
T Consensus 140 ~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~iglaGP~-----------VIe~~~G~e~~d~~d~~~vw~ 207 (301)
T PRK07189 140 VDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLSGPE-----------VIEQEAGVEEFDSRDRALVWR 207 (301)
T ss_pred HHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEeccCHH-----------HHHHhcCCcccCHHHhccccc
Confidence 344444 9999999999 99999999999999999999877753211 11111120 011223333334
Q ss_pred CCCHHHHHHcCCcccccCCh
Q psy14406 145 KIEAAEARECGLVSKLYDDK 164 (275)
Q Consensus 145 ~~~a~eA~~~GLv~~vv~~~ 164 (275)
.+.+......|.+|.++++.
T Consensus 208 ~lGG~h~~~sG~~D~~v~dd 227 (301)
T PRK07189 208 TTGGKHRYLSGLADALVDDD 227 (301)
T ss_pred ccCcceeeecccceEEeCCH
Confidence 44445566799999999873
No 127
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.79 E-value=0.00039 Score=59.76 Aligned_cols=97 Identities=14% Similarity=0.123 Sum_probs=66.5
Q ss_pred HHHhhcCCCcEEEEECchhchHHHHHHHHCCE--EEEeCCceEeccccccCcccCchhh---------------hhhhHH
Q psy14406 67 ISSLERCPKPVISAVHGACIGGGMSLITAADI--RYATKDAWFTLKEVDIGLTADVGAL---------------QRLPRI 129 (275)
Q Consensus 67 ~~~l~~~~kP~Ia~v~G~a~GgG~~lal~~D~--rva~~~a~f~~pe~~~G~~p~~g~~---------------~~l~r~ 129 (275)
+..|...+-||...+.|.|.+.|.-|++++|. |++.++++|.+-...-|......-. ..+.+.
T Consensus 105 yd~m~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~ 184 (221)
T PRK14514 105 YDTMQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADH 184 (221)
T ss_pred HHHHHhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566668899999999999999999999996 8999999987766543332111100 012222
Q ss_pred hCc-HHHHHHHHhcCCCCCHHHHHHcCCcccccCC
Q psy14406 130 IGN-QSLVNEIAFTARKIEAAEARECGLVSKLYDD 163 (275)
Q Consensus 130 ~G~-~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~ 163 (275)
.|. .....+.+-...-++|+||+++||||+|+..
T Consensus 185 TG~~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 185 SGTPFDKVWADSDRDYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred HCcCHHHHHHHhhcCccCCHHHHHHcCCccEEeec
Confidence 331 1122334445566999999999999999864
No 128
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=97.79 E-value=0.00032 Score=59.27 Aligned_cols=97 Identities=16% Similarity=0.194 Sum_probs=65.3
Q ss_pred HHHhhcCCCcEEEEECchhchHHHHHHHHCCE--EEEeCCceEeccccccCcccCchhh---------------hhhhHH
Q psy14406 67 ISSLERCPKPVISAVHGACIGGGMSLITAADI--RYATKDAWFTLKEVDIGLTADVGAL---------------QRLPRI 129 (275)
Q Consensus 67 ~~~l~~~~kP~Ia~v~G~a~GgG~~lal~~D~--rva~~~a~f~~pe~~~G~~p~~g~~---------------~~l~r~ 129 (275)
+..|...+-||...+.|.|.+.|.-|++++|- |++.+++++.+-...-|..-...-. ..+...
T Consensus 76 yd~m~~~~~~V~t~~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~ 155 (196)
T PRK12551 76 FDTMQHVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSER 155 (196)
T ss_pred HHHHHhcCCCEEEEEEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556668899999999999999999999985 8899999987766543321111000 112222
Q ss_pred hCc-HHHHHHHHhcCCCCCHHHHHHcCCcccccCC
Q psy14406 130 IGN-QSLVNEIAFTARKIEAAEARECGLVSKLYDD 163 (275)
Q Consensus 130 ~G~-~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~ 163 (275)
.|. .....+++-...-++|+||+++||||+|++.
T Consensus 156 tG~~~~~i~~~~~rd~~msa~EA~eyGliD~I~~~ 190 (196)
T PRK12551 156 TGQPLERIQEDTDRDFFMSPSEAVEYGLIDLVIDK 190 (196)
T ss_pred HCcCHHHHHHHhhcCcCCCHHHHHHcCCCcEEecc
Confidence 331 1122334444556999999999999999975
No 129
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=97.69 E-value=0.00039 Score=60.96 Aligned_cols=57 Identities=19% Similarity=0.134 Sum_probs=51.2
Q ss_pred HHHHhhcCCCcEEEEECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchh
Q psy14406 66 SISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGA 122 (275)
Q Consensus 66 ~~~~l~~~~kP~Ia~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~ 122 (275)
+...+.+++.|+++.|+..|+.+|.-++++||-+|+.+++.+|--+..+|-.|....
T Consensus 110 I~~~l~~~~~~v~v~VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~si 166 (285)
T PF01972_consen 110 IARALREHPAKVTVIVPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAASI 166 (285)
T ss_pred HHHHHHhCCCCEEEEECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChHHH
Confidence 355666779999999999999999999999999999999999999999999886543
No 130
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.60 E-value=0.0012 Score=56.07 Aligned_cols=96 Identities=16% Similarity=0.176 Sum_probs=66.9
Q ss_pred HHHHhhcCCCcEEEEECchhchHHHHHHHHCCE--EEEeCCceEeccccccCcccCchhhh-----------------hh
Q psy14406 66 SISSLERCPKPVISAVHGACIGGGMSLITAADI--RYATKDAWFTLKEVDIGLTADVGALQ-----------------RL 126 (275)
Q Consensus 66 ~~~~l~~~~kP~Ia~v~G~a~GgG~~lal~~D~--rva~~~a~f~~pe~~~G~~p~~g~~~-----------------~l 126 (275)
++..|...+-||...+.|.|.+.+.-|++++|- |++.+++++-+-....|+. +.... .+
T Consensus 77 Iyd~m~~~~~~V~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l~~iy 154 (201)
T PRK14513 77 IYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTLVDIY 154 (201)
T ss_pred HHHHHHhcCCCEEEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566668899999999999999999999995 9999999987766654431 11111 11
Q ss_pred hHHhCc-HHHHHHHHhcCCCCCHHHHHHcCCcccccCC
Q psy14406 127 PRIIGN-QSLVNEIAFTARKIEAAEARECGLVSKLYDD 163 (275)
Q Consensus 127 ~r~~G~-~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~ 163 (275)
.+..|. .....+++-...-++|+||+++||||+|+++
T Consensus 155 a~~Tg~~~~~I~~~~~rd~~msa~EA~eyGliD~I~~~ 192 (201)
T PRK14513 155 HRHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVIEP 192 (201)
T ss_pred HHHHCcCHHHHHHHhccCcccCHHHHHHcCCCcEEecc
Confidence 222331 1122334444556999999999999999975
No 131
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=97.43 E-value=0.0011 Score=57.57 Aligned_cols=89 Identities=19% Similarity=0.130 Sum_probs=58.4
Q ss_pred HHHHHhhcCCCcEEEEECchhchHHH-HHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcC
Q psy14406 65 KSISSLERCPKPVISAVHGACIGGGM-SLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTA 143 (275)
Q Consensus 65 ~~~~~l~~~~kP~Ia~v~G~a~GgG~-~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG 143 (275)
..+......+.|+|+.|-|.++|||+ .+.+.+|.+++-+++.++ ..+.-+.+..+.+-.. ...++.-+-
T Consensus 98 ~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i~-------vm~~e~aa~I~~~~~~---~~~e~a~~~ 167 (238)
T TIGR03134 98 KALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMVH-------VMDLESMARVTKRSVE---ELEALAKSS 167 (238)
T ss_pred HHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEEE-------ecCHHHHHHHHccCHh---HHHHHHHhh
Confidence 33444445569999999999999887 444457888877776554 5555555444443322 233443222
Q ss_pred --CCCCHHHHHHcCCcccccCC
Q psy14406 144 --RKIEAAEARECGLVSKLYDD 163 (275)
Q Consensus 144 --~~~~a~eA~~~GLv~~vv~~ 163 (275)
...+...+.+.|+||.|++.
T Consensus 168 ~~~a~~~~~~~~~G~vd~vi~~ 189 (238)
T TIGR03134 168 PVFAPGIENFVKLGGVHALLDV 189 (238)
T ss_pred hhhccCHHHHHhCCCccEEeCC
Confidence 23566779999999999986
No 132
>PRK10949 protease 4; Provisional
Probab=97.40 E-value=0.0023 Score=63.11 Aligned_cols=81 Identities=19% Similarity=0.216 Sum_probs=57.1
Q ss_pred HHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Q psy14406 2 IGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAV 81 (275)
Q Consensus 2 l~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~v 81 (275)
+.++++++.+||.|++|||+-.+. .|..+.. ...+++.+..+....||+||.-
T Consensus 100 iv~~i~~Aa~D~rIkgivL~i~s~---gG~~~a~------------------------~~eI~~ai~~fk~sGKpVvA~~ 152 (618)
T PRK10949 100 IVNTIRQAKDDRNITGIVLDLKNF---AGADQPS------------------------MQYIGKALREFRDSGKPVYAVG 152 (618)
T ss_pred HHHHHHHHhcCCCceEEEEEeCCC---CCccHHH------------------------HHHHHHHHHHHHHhCCeEEEEe
Confidence 677899999999999999997531 1222211 1122334555566689999965
Q ss_pred CchhchHHHHHHHHCCEEEEeCCceEecc
Q psy14406 82 HGACIGGGMSLITAADIRYATKDAWFTLK 110 (275)
Q Consensus 82 ~G~a~GgG~~lal~~D~rva~~~a~f~~p 110 (275)
+.+ --+++.|+.+||-+++.+.+.+++.
T Consensus 153 ~~~-~s~~YyLASaAD~I~l~P~G~v~~~ 180 (618)
T PRK10949 153 DSY-SQGQYYLASFANKIYLSPQGVVDLH 180 (618)
T ss_pred cCc-cchhhhhhhhCCEEEECCCceEEEe
Confidence 555 4578999999999999998876544
No 133
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.22 E-value=0.0063 Score=51.30 Aligned_cols=95 Identities=20% Similarity=0.307 Sum_probs=61.2
Q ss_pred HHHhhcCCCcEEEEECchhchHHHHHHHHCCEE--EEeCCceEeccccccCcccCchh-hh---------------hhhH
Q psy14406 67 ISSLERCPKPVISAVHGACIGGGMSLITAADIR--YATKDAWFTLKEVDIGLTADVGA-LQ---------------RLPR 128 (275)
Q Consensus 67 ~~~l~~~~kP~Ia~v~G~a~GgG~~lal~~D~r--va~~~a~f~~pe~~~G~~p~~g~-~~---------------~l~r 128 (275)
+..|...+.||...+.|.|..-|.-|+++++.. ++.++|++-.--.. |.+-+... .. .+..
T Consensus 78 ydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~ 156 (200)
T COG0740 78 YDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQASDIEIHAREILKIKERLNRIYAE 156 (200)
T ss_pred HHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566699999999999999999999999985 88888876654443 22211111 00 0111
Q ss_pred HhCcHHH--HHHHHhcCCCCCHHHHHHcCCcccccCC
Q psy14406 129 IIGNQSL--VNEIAFTARKIEAAEARECGLVSKLYDD 163 (275)
Q Consensus 129 ~~G~~~~--a~~l~ltG~~~~a~eA~~~GLv~~vv~~ 163 (275)
..|. .. -....-...-++|+||+++||||+|...
T Consensus 157 ~TGq-~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~ 192 (200)
T COG0740 157 HTGQ-TLEKIEKDTDRDTWMSAEEAKEYGLIDKVIES 192 (200)
T ss_pred HcCC-CHHHHHHhhcccccCCHHHHHHcCCcceeccc
Confidence 1221 11 1112223445899999999999999976
No 134
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.21 E-value=0.0039 Score=55.92 Aligned_cols=97 Identities=16% Similarity=0.166 Sum_probs=66.0
Q ss_pred HHHhhcCCCcEEEEECchhchHHHH-HHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCC
Q psy14406 67 ISSLERCPKPVISAVHGACIGGGMS-LITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARK 145 (275)
Q Consensus 67 ~~~l~~~~kP~Ia~v~G~a~GgG~~-lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~ 145 (275)
+.++.....|.|+.+.|+|.||+.. .++.+|++|+.+++.+++-..+ .+...++. ++ .-+.
T Consensus 187 ~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------vie~~~~e-----~l--pe~~ 248 (292)
T PRK05654 187 LKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPR-----------VIEQTVRE-----KL--PEGF 248 (292)
T ss_pred HHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHH-----------HHHhhhhh-----hh--hhhh
Confidence 4445566899999999999999764 5777999999998877653221 11111121 11 1112
Q ss_pred CCHHHHHHcCCcccccCChhHHHHHHHHHHHHHhcCC
Q psy14406 146 IEAAEARECGLVSKLYDDKESLLAGAIELGELIASKS 182 (275)
Q Consensus 146 ~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~ 182 (275)
-+++-+.+.|+||.|+++ .++.....++.+.+...+
T Consensus 249 ~~ae~~~~~G~vD~Vv~~-~e~r~~l~~~L~~~~~~~ 284 (292)
T PRK05654 249 QRAEFLLEHGAIDMIVHR-RELRDTLASLLALHTKQP 284 (292)
T ss_pred cCHHHHHhCCCCcEEECH-HHHHHHHHHHHHHHhcCC
Confidence 245667789999999997 788888777777665443
No 135
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.16 E-value=0.0043 Score=55.42 Aligned_cols=94 Identities=12% Similarity=0.140 Sum_probs=64.1
Q ss_pred HHHhhcCCCcEEEEECchhchHHHH-HHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCC
Q psy14406 67 ISSLERCPKPVISAVHGACIGGGMS-LITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARK 145 (275)
Q Consensus 67 ~~~l~~~~kP~Ia~v~G~a~GgG~~-lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~ 145 (275)
+.++.....|.|+++.|+|.||+.. .++.+|++|+.+++.+++...+ .+...+|. ++ .-+-
T Consensus 186 ~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------Vie~ti~e-----~l--pe~~ 247 (285)
T TIGR00515 186 LAKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR-----------VIEQTVRE-----KL--PEGF 247 (285)
T ss_pred HHHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH-----------HHHHHhcC-----cc--chhc
Confidence 3455666899999999999999664 5679999999999877763332 11222221 11 1112
Q ss_pred CCHHHHHHcCCcccccCChhHHHHHHHHHHHHHh
Q psy14406 146 IEAAEARECGLVSKLYDDKESLLAGAIELGELIA 179 (275)
Q Consensus 146 ~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la 179 (275)
-+++-+.+.|+||.|+++ .++.+....+..-+.
T Consensus 248 q~ae~~~~~G~vD~iv~~-~~~r~~l~~~L~~~~ 280 (285)
T TIGR00515 248 QTSEFLLEHGAIDMIVHR-PEMKKTLASLLAKLQ 280 (285)
T ss_pred CCHHHHHhCCCCcEEECc-HHHHHHHHHHHHHHh
Confidence 245557789999999998 788887777666543
No 136
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=97.10 E-value=0.0024 Score=56.31 Aligned_cols=90 Identities=24% Similarity=0.318 Sum_probs=67.0
Q ss_pred HHHHHHHhhcCCCcEEEEECchhchHHHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhc
Q psy14406 63 YQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFT 142 (275)
Q Consensus 63 ~~~~~~~l~~~~kP~Ia~v~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~lt 142 (275)
+.+-+..+.+++.|+||.|=|---+||.--...+|.+.+-++++|+. +.|.+.+ ..|-+- .+++.+ +-.
T Consensus 177 IA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~A-sILWkD---~~ka~e-AAe 245 (317)
T COG0825 177 IARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCA-SILWKD---ASKAKE-AAE 245 (317)
T ss_pred HHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhh-hhhhcC---hhhhHH-HHH
Confidence 44456678889999999999988777776666779999999999983 3444444 344332 234443 346
Q ss_pred CCCCCHHHHHHcCCcccccCC
Q psy14406 143 ARKIEAAEARECGLVSKLYDD 163 (275)
Q Consensus 143 G~~~~a~eA~~~GLv~~vv~~ 163 (275)
.-.+++.+.+++|+||.|+|.
T Consensus 246 ~mkita~dLk~lgiID~II~E 266 (317)
T COG0825 246 AMKITAHDLKELGIIDGIIPE 266 (317)
T ss_pred HcCCCHHHHHhCCCcceeccC
Confidence 678999999999999999975
No 137
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=96.92 E-value=0.02 Score=49.31 Aligned_cols=95 Identities=19% Similarity=0.246 Sum_probs=63.2
Q ss_pred HHHhhcCCCcEEEEECchhchHHHHHHHHCCE--EEEeCCceEeccccccCcccCchhhh-----------------hhh
Q psy14406 67 ISSLERCPKPVISAVHGACIGGGMSLITAADI--RYATKDAWFTLKEVDIGLTADVGALQ-----------------RLP 127 (275)
Q Consensus 67 ~~~l~~~~kP~Ia~v~G~a~GgG~~lal~~D~--rva~~~a~f~~pe~~~G~~p~~g~~~-----------------~l~ 127 (275)
+..|...+-||...+.|.|.+.+.-|++++|- |++.++++|-+-....|.. +-.+- .+.
T Consensus 100 yD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~--G~A~di~~~a~el~~~r~~l~~iya 177 (222)
T PRK12552 100 CDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR--GQATDIQIRAKEVLHNKRTMLEILS 177 (222)
T ss_pred HHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc--cCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555567789999999999999999999995 8999999987766554432 11111 111
Q ss_pred HHhCc-HHHHHHHHhcCCCCCHHHHHHcCCcccccCC
Q psy14406 128 RIIGN-QSLVNEIAFTARKIEAAEARECGLVSKLYDD 163 (275)
Q Consensus 128 r~~G~-~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~ 163 (275)
...|. ...-.+++-.-.-++|+||+++||||+|+.+
T Consensus 178 ~~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 178 RNTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLES 214 (222)
T ss_pred HHHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEecc
Confidence 11221 0111222223345999999999999999965
No 138
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=96.85 E-value=0.01 Score=57.24 Aligned_cols=86 Identities=35% Similarity=0.459 Sum_probs=58.8
Q ss_pred HHHhhcCCCcEEEEECchhchHHHHHHHHCCEEEEeCC-ceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCC
Q psy14406 67 ISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKD-AWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARK 145 (275)
Q Consensus 67 ~~~l~~~~kP~Ia~v~G~a~GgG~~lal~~D~rva~~~-a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~ 145 (275)
...+.. ..|+|+++.|+|.|||..++..||++|++++ +.+++... + ..+ ..+|+.
T Consensus 125 ~~~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~GP---------------~-------vv~-~~~Ge~ 180 (493)
T PF01039_consen 125 IARLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLAGP---------------R-------VVE-SATGEE 180 (493)
T ss_dssp HHHHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESSTH---------------H-------HHH-HHHSSC
T ss_pred HHHHhc-CCCeEEEEccccccchhhcccccCccccCccceEEEeccc---------------c-------ccc-cccCcc
Confidence 344555 8999999999999999999999999999988 76653211 1 111 224577
Q ss_pred CCHHH-------HHHcCCcccccCChhHHHHHHHHHHH
Q psy14406 146 IEAAE-------ARECGLVSKLYDDKESLLAGAIELGE 176 (275)
Q Consensus 146 ~~a~e-------A~~~GLv~~vv~~~~~l~~~a~~~a~ 176 (275)
++.++ +...|.+|.++++.++..+.+.++..
T Consensus 181 ~~~~~lgG~~~h~~~sG~~d~v~~de~~a~~~ir~~ls 218 (493)
T PF01039_consen 181 VDSEELGGADVHAAKSGVVDYVVDDEEDALAQIRRLLS 218 (493)
T ss_dssp TSHHHHHBHHHHHHTSSSSSEEESSHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhcccCCCceEEEechHHHHHHHHHhhc
Confidence 77654 35789999999873333344444443
No 139
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=96.70 E-value=0.039 Score=49.38 Aligned_cols=86 Identities=16% Similarity=0.089 Sum_probs=56.9
Q ss_pred cCCCcEEEEECchhchHHHHH-HHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHH
Q psy14406 72 RCPKPVISAVHGACIGGGMSL-ITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAE 150 (275)
Q Consensus 72 ~~~kP~Ia~v~G~a~GgG~~l-al~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~e 150 (275)
.-..|+|+.+.|+|.||+... ++.||++|+.+++.+++...+ .....+|. -+.-.-=+++-
T Consensus 205 ~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPr-----------VIe~t~ge-------~lpe~fq~ae~ 266 (296)
T CHL00174 205 NKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKR-----------VIEQTLNK-------TVPEGSQAAEY 266 (296)
T ss_pred cCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHH-----------HHHHhcCC-------cCCcccccHHH
Confidence 447999999999999998866 666999999888876643221 01111110 01111123555
Q ss_pred HHHcCCcccccCChhHHHHHHHHHHH
Q psy14406 151 ARECGLVSKLYDDKESLLAGAIELGE 176 (275)
Q Consensus 151 A~~~GLv~~vv~~~~~l~~~a~~~a~ 176 (275)
.++.|+||.+|+. .++.+....+..
T Consensus 267 l~~~G~vD~iV~r-~~lr~~l~~ll~ 291 (296)
T CHL00174 267 LFDKGLFDLIVPR-NLLKGVLSELFQ 291 (296)
T ss_pred HHhCcCceEEEcH-HHHHHHHHHHHH
Confidence 7799999999997 788777666554
No 140
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0096 Score=55.63 Aligned_cols=110 Identities=17% Similarity=0.213 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhhcCCCcEEEEE---CchhchHHHHHHHHCCEEEEeCCceEeccccc-cC-cccC-ch-hhhh------h
Q psy14406 60 ITTYQKSISSLERCPKPVISAV---HGACIGGGMSLITAADIRYATKDAWFTLKEVD-IG-LTAD-VG-ALQR------L 126 (275)
Q Consensus 60 ~~~~~~~~~~l~~~~kP~Ia~v---~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~-~G-~~p~-~g-~~~~------l 126 (275)
.+...++++.+.+.|.|++..| .++|..+|..++++||+..+.+.+.++--..- .| -.++ .. ..+. +
T Consensus 71 ~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~ 150 (436)
T COG1030 71 LDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSL 150 (436)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHH
Confidence 3455678899999999988888 45799999999999999999999988765433 22 1111 11 1111 2
Q ss_pred hHHhCc-HHHHHHHHhcCCCCCHHHHHHcCCcccccCChhHHHH
Q psy14406 127 PRIIGN-QSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLA 169 (275)
Q Consensus 127 ~r~~G~-~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~~l~~ 169 (275)
.+.-|. ...+.+++.....++++||++.|++|-+..+..++..
T Consensus 151 A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~~~ell~ 194 (436)
T COG1030 151 AEERGRNPTWAERFVTENLSLTAEEALRQGVIDLIARDLNELLK 194 (436)
T ss_pred HHHcCCChHHHHHHhhhccCCChhHHHhcCccccccCCHHHHHH
Confidence 222232 2356778888999999999999999999876444443
No 141
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=96.40 E-value=0.05 Score=52.74 Aligned_cols=112 Identities=17% Similarity=0.227 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEECchhchHHHHHHH----HCCEEEEeCCceEeccccccCcccCchhhhhhhHH-hC--
Q psy14406 59 LITTYQKSISSLERCPKPVISAVHGACIGGGMSLIT----AADIRYATKDAWFTLKEVDIGLTADVGALQRLPRI-IG-- 131 (275)
Q Consensus 59 ~~~~~~~~~~~l~~~~kP~Ia~v~G~a~GgG~~lal----~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~-~G-- 131 (275)
.++..-+++..+.....|+|+.|-|.+.|||..-+. .+|++++.+++.++ +.++-++...+-+. +.
T Consensus 373 ~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~-------v~~pe~a~~i~~~~~l~~~ 445 (512)
T TIGR01117 373 IIRHGAKVLYAYSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIA-------VMGPAGAANIIFRKDIKEA 445 (512)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEe-------ecCHHHHHHHHhhhhcccc
Confidence 344555677888888999999999999888654443 28999888887665 43333332222211 10
Q ss_pred -cHHHHH-H-HH-hcCCCCCHHHHHHcCCcccccCChhHHHHHHHHHHHHH
Q psy14406 132 -NQSLVN-E-IA-FTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELI 178 (275)
Q Consensus 132 -~~~~a~-~-l~-ltG~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~l 178 (275)
....++ + +. ..-+..++..+.+.|+||.|+++ .++........+.+
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~a~~g~vD~VI~P-~~tR~~l~~~l~~~ 495 (512)
T TIGR01117 446 KDPAATRKQKIAEYREEFANPYKAAARGYVDDVIEP-KQTRPKIVNALAML 495 (512)
T ss_pred cCHHHHHHHHHHHHHHhhcCHHHHHhcCCCCeeECh-HHHHHHHHHHHHHH
Confidence 001111 1 11 11234578889999999999998 77777665555543
No 142
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=96.22 E-value=0.013 Score=45.51 Aligned_cols=65 Identities=20% Similarity=0.193 Sum_probs=53.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccccc-cCC
Q psy14406 171 AIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSH-DCP 235 (275)
Q Consensus 171 a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~-~sp 235 (275)
+.+..+.|...+|.++..+-+.++++...++.+.+..+..........+||.||+.+.++.| ++|
T Consensus 33 a~~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EGVRA~LIDKd~~P 98 (118)
T PF13766_consen 33 AQKTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEGVRALLIDKDKNP 98 (118)
T ss_dssp HHHHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHHHHHHTTS-----
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCC
Confidence 55566788999999999999999999999999999999998888888999999999999954 556
No 143
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=96.06 E-value=0.081 Score=46.50 Aligned_cols=101 Identities=18% Similarity=0.182 Sum_probs=69.5
Q ss_pred HHHHHHHhhcCCCcEEEEECchhchH-HHHHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHh
Q psy14406 63 YQKSISSLERCPKPVISAVHGACIGG-GMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAF 141 (275)
Q Consensus 63 ~~~~~~~l~~~~kP~Ia~v~G~a~Gg-G~~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~l 141 (275)
....+.++.....|+|+.+..+.+|| ...+++..|+.||.++|.+++...+ .|- +..++-+-
T Consensus 184 tsaAl~~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpR---------------VIE--QTire~LP 246 (294)
T COG0777 184 TSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPR---------------VIE--QTIREKLP 246 (294)
T ss_pred HHHHHHHHHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcch---------------hhh--hhhcccCC
Confidence 34456777788999999999999998 4589999999999988876654322 110 01111111
Q ss_pred cCCCCCHHHHHHcCCcccccCChhHHHHHHHHHHHHHhcCC
Q psy14406 142 TARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIASKS 182 (275)
Q Consensus 142 tG~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~ 182 (275)
. .--+++-.++.|+||.||.. .++......+...+...+
T Consensus 247 e-gfQ~aEfLlehG~iD~iv~R-~elr~tla~ll~~~~~~~ 285 (294)
T COG0777 247 E-GFQTAEFLLEHGMIDMIVHR-DELRTTLASLLAKLTPQP 285 (294)
T ss_pred c-chhhHHHHHHcCCceeeecH-HHHHHHHHHHHHHhCCCC
Confidence 1 12235567799999999997 788887777776665544
No 144
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=95.98 E-value=0.018 Score=55.69 Aligned_cols=89 Identities=22% Similarity=0.345 Sum_probs=58.1
Q ss_pred CCcEEEEECchhchHHHHHHHHCCEEEEeCCc-eEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCCHHHHH
Q psy14406 74 PKPVISAVHGACIGGGMSLITAADIRYATKDA-WFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEAR 152 (275)
Q Consensus 74 ~kP~Ia~v~G~a~GgG~~lal~~D~rva~~~a-~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~a~eA~ 152 (275)
..|+|+++.|.|.||+......||++|+++++ .+.+. +...+....|. -++.+.+.+.+..
T Consensus 154 ~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~a-----------GP~vv~~~~Ge-------~v~~e~lGGa~~h 215 (512)
T TIGR01117 154 VVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFIT-----------GPQVIKTVTGE-------EVTAEQLGGAMAH 215 (512)
T ss_pred CCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEec-----------ChHHHHhhcCc-------ccchhhcchHHHh
Confidence 58999999999999999888899999999864 44431 11111111221 0133334444433
Q ss_pred --HcCCcccccCChhHHHHHHHHHHHHHhc
Q psy14406 153 --ECGLVSKLYDDKESLLAGAIELGELIAS 180 (275)
Q Consensus 153 --~~GLv~~vv~~~~~l~~~a~~~a~~la~ 180 (275)
..|.+|.++++.++..+.+.++..-+..
T Consensus 216 ~~~sGv~d~~~~de~ea~~~~r~~ls~lp~ 245 (512)
T TIGR01117 216 NSVSGVAHFIAEDDDDCIMLIRRLLSFLPS 245 (512)
T ss_pred ccccceeEEecCChHHHHHHHHHHHHhCCc
Confidence 5899999998866676667666665543
No 145
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=95.86 E-value=0.17 Score=49.64 Aligned_cols=87 Identities=21% Similarity=0.257 Sum_probs=56.3
Q ss_pred HhhcCCCcEEEEECchhchHHHHHHHHCCEEEEeCC-ceEeccccccCcccCchhhhhhhHHhCcHHHHHHHHhcCCCCC
Q psy14406 69 SLERCPKPVISAVHGACIGGGMSLITAADIRYATKD-AWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIE 147 (275)
Q Consensus 69 ~l~~~~kP~Ia~v~G~a~GgG~~lal~~D~rva~~~-a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~~a~~l~ltG~~~~ 147 (275)
++.....|+|++|-|.|.|||......||++|++++ +.+.+. +. .+.+. .+|+.++
T Consensus 200 ~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~a-----------GP-~vV~~-----------~~Ge~v~ 256 (569)
T PLN02820 200 RMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFLA-----------GP-PLVKA-----------ATGEEVS 256 (569)
T ss_pred HHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEec-----------CH-HHHHh-----------hcCcccC
Confidence 355567999999999999999999999999999875 544431 11 11111 2344455
Q ss_pred HHHH-----H--HcCCcccccCChhHHHHHHHHHHHHH
Q psy14406 148 AAEA-----R--ECGLVSKLYDDKESLLAGAIELGELI 178 (275)
Q Consensus 148 a~eA-----~--~~GLv~~vv~~~~~l~~~a~~~a~~l 178 (275)
+++. . ..|.+|.++++..+..+.+.++..-+
T Consensus 257 ~eeLGGa~~h~~~sGv~d~~~~de~~a~~~~R~lls~L 294 (569)
T PLN02820 257 AEDLGGADVHCKVSGVSDHFAQDELHALAIGRNIVKNL 294 (569)
T ss_pred HHHhCCHHHhcccccccccccCchHHHHHHHHHHHHhc
Confidence 4443 3 48999999987433334444444444
No 146
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=94.66 E-value=0.51 Score=46.34 Aligned_cols=112 Identities=13% Similarity=0.082 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEECchhchHHHHHHH----HCCEEEEeCCceEeccccccCcccCchhhhhhhHH-h--
Q psy14406 58 KLITTYQKSISSLERCPKPVISAVHGACIGGGMSLIT----AADIRYATKDAWFTLKEVDIGLTADVGALQRLPRI-I-- 130 (275)
Q Consensus 58 ~~~~~~~~~~~~l~~~~kP~Ia~v~G~a~GgG~~lal----~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~-~-- 130 (275)
..++...+++..+.....|.|+.|-|.+.|+|..-+. ..|++++.+++. +|..++-++...+.+. +
T Consensus 423 G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~aM~g~~~~~d~~~awp~A~-------i~vmg~e~aa~il~~~e~~~ 495 (569)
T PLN02820 423 GIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYGMCGRAYSPNFLFMWPNAR-------IGVMGGAQAAGVLAQIEREN 495 (569)
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHHhcCcCCCCCEEEECCCCe-------EEecCHHHHHHHHHHHHhhh
Confidence 4566777888999999999999999999998776554 456766666654 5566665555444331 1
Q ss_pred ----C-----cHHHH-HH-H-HhcCCCCCHHHHHHcCCcccccCChhHHHHHHHHHHHH
Q psy14406 131 ----G-----NQSLV-NE-I-AFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGEL 177 (275)
Q Consensus 131 ----G-----~~~~a-~~-l-~ltG~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ 177 (275)
| ....+ ++ + -..-+..++-.+.+.|++|.|+++ .+.........+.
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aa~~~~vD~VIdP-~dTR~~l~~~l~~ 553 (569)
T PLN02820 496 KKRQGIQWSKEEEEAFKAKTVEAYEREANPYYSTARLWDDGVIDP-ADTRRVLGLCLSA 553 (569)
T ss_pred hhhccccCCccHHHHHHHHHHHHHHHhCCHHHHHHcCCcCcccCH-HHHHHHHHHHHHH
Confidence 0 00000 01 1 111224567778899999999987 6666554444443
No 147
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=94.64 E-value=0.049 Score=52.34 Aligned_cols=37 Identities=30% Similarity=0.460 Sum_probs=32.8
Q ss_pred HHhhcCCCcEEEEECchhchHHHHHHHHCCEEEEeCCc
Q psy14406 68 SSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDA 105 (275)
Q Consensus 68 ~~l~~~~kP~Ia~v~G~a~GgG~~lal~~D~rva~~~a 105 (275)
.+++.. .|.|++|-|.|.|||..+...||++|+.+++
T Consensus 158 a~~Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~ 194 (526)
T COG4799 158 ARASGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQ 194 (526)
T ss_pred HHhccC-CCEEEEEEecCcccccccccccceEEEEcCC
Confidence 344455 9999999999999999999999999999984
No 148
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=93.13 E-value=0.14 Score=47.70 Aligned_cols=38 Identities=11% Similarity=0.121 Sum_probs=32.9
Q ss_pred hccccccccccCCcchhhHHHHHhccCccChHHHHHHH
Q psy14406 223 KGVSPERMSHDCPECLIGSIGVFHTLDRVDLNQCDEDL 260 (275)
Q Consensus 223 e~~~~~~~~~~sp~~~~v~~~~~~~~~~~~~~~~~~~~ 260 (275)
....+..+.+.||+|++++.++++++...++++||+..
T Consensus 266 A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e 303 (379)
T PLN02874 266 IKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKE 303 (379)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 33566677889999999999999999999999999875
No 149
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=92.57 E-value=0.32 Score=47.02 Aligned_cols=116 Identities=18% Similarity=0.131 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEECchhchHHHHHHHHC----CEEEEeCCceEeccccccCcccCchhhhhhhHHh-C-
Q psy14406 58 KLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAA----DIRYATKDAWFTLKEVDIGLTADVGALQRLPRII-G- 131 (275)
Q Consensus 58 ~~~~~~~~~~~~l~~~~kP~Ia~v~G~a~GgG~~lal~~----D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~-G- 131 (275)
..++..-+++..+..+..|+|..|-|.+.|||....... |+++|.+++.++ +.++-+....+-+.- -
T Consensus 351 g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~-------vm~~e~a~~i~~~~~~~~ 423 (493)
T PF01039_consen 351 GIIRAGARLLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIG-------VMGPEGAASILYRDELEA 423 (493)
T ss_dssp THHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEE-------SS-HHHHHHHHTHHHHHH
T ss_pred chHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceee-------ecChhhhheeeehhhhhh
Confidence 445666778889999999999999999999888665555 788777777665 544444433332221 0
Q ss_pred -------cHHHHHHHH-h-cCCCCCHHHHHHcCCcccccCChhHHHHHHHHHHHHHhcC
Q psy14406 132 -------NQSLVNEIA-F-TARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIASK 181 (275)
Q Consensus 132 -------~~~~a~~l~-l-tG~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~ 181 (275)
......+++ - .-...++..+...|++|.++++ .+..........-+.+.
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~D~ii~p-~~tR~~l~~~l~~~~~~ 481 (493)
T PF01039_consen 424 AEAEGADPEAQRAEKIAEYEDELSSPYRAASRGYVDDIIDP-AETRKVLIAALEMLWQK 481 (493)
T ss_dssp SCHCCHSHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEESSG-GGHHHHHHHHHHHHTTS
T ss_pred hhcccchhHHHHHHHHHHHHHhcCCHHHHHhcCCCCCccCH-HHHHHHHHHHHHHHHhC
Confidence 000011111 1 1122578899999999999987 67777665555444333
No 150
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=90.77 E-value=0.55 Score=43.86 Aligned_cols=65 Identities=11% Similarity=0.097 Sum_probs=54.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccC---CchHHhccccccccc-cCCcc
Q psy14406 173 ELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCD---RRNCNKGVSPERMSH-DCPEC 237 (275)
Q Consensus 173 ~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~e~~~~~~~~~-~sp~~ 237 (275)
+..+.+.+.+|.++..+.+.++.....++.+.+..+......... .+||.||+.+.++.| +.|.=
T Consensus 268 ~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~LiDKd~~P~W 336 (381)
T PLN02988 268 ATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEGCRAILVDKDKNPKW 336 (381)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHhcCCCCCCCC
Confidence 345667889999999999999999888999999999887766666 689999999999965 46643
No 151
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=89.81 E-value=0.81 Score=43.09 Aligned_cols=74 Identities=19% Similarity=0.199 Sum_probs=56.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhccc---CCchHHhcccccccccc-CCcchhhHHHH
Q psy14406 171 AIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGC---DRRNCNKGVSPERMSHD-CPECLIGSIGV 244 (275)
Q Consensus 171 a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~e~~~~~~~~~~-sp~~~~v~~~~ 244 (275)
+.+.++.|.+.+|.++..+.+.++.....++++.+..+........ ..+||.||+.+.++.|. +|.=-.-+++.
T Consensus 299 a~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVRA~LIDKd~~P~W~p~sl~~ 376 (407)
T PLN02851 299 CKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVRARLVDKDFAPKWDPPSLGE 376 (407)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHHHHhcCCCCCCCCCCCChhh
Confidence 3344467888999999999999999988899999999887766554 47899999999999554 66443333333
No 152
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=88.49 E-value=1 Score=42.31 Aligned_cols=71 Identities=15% Similarity=0.168 Sum_probs=55.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccC---CchHHhccccccccc-cCCcchhhHHH
Q psy14406 173 ELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCD---RRNCNKGVSPERMSH-DCPECLIGSIG 243 (275)
Q Consensus 173 ~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~e~~~~~~~~~-~sp~~~~v~~~ 243 (275)
+..+.|.+.+|.++..+-+.+++....++++.+..+......... ++||.||+.+.++.| ++|.=..-+++
T Consensus 296 ~~~~~l~~~sP~Sl~vt~~~~~~~~~~~l~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~LiDKd~~P~W~p~~l~ 370 (401)
T PLN02157 296 TTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIREYRMSLQGLIGPMSGNFCEGVRARLIDKDEAPKWDPPSLE 370 (401)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHcCCCCCCCCCCCChh
Confidence 344668889999999999999998888999999998877666553 689999999999965 46644333333
No 153
>KOG1684|consensus
Probab=86.02 E-value=1.5 Score=40.33 Aligned_cols=66 Identities=17% Similarity=0.153 Sum_probs=56.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCchHHhccccccccc-cCCc
Q psy14406 171 AIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSH-DCPE 236 (275)
Q Consensus 171 a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~-~sp~ 236 (275)
|.+..+.|...+|.++..+-+.+......++++.+..+...........||.||+.+.++.+ +.|.
T Consensus 298 ak~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~Eyr~s~~~~~~~DF~EGvRA~LIDKd~~PK 364 (401)
T KOG1684|consen 298 AKETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCLTMEYRLSLRMLMRGDFCEGVRAVLIDKDQNPK 364 (401)
T ss_pred HHHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchhhhhhheeecCCcCCC
Confidence 44455778889999999999999999888999999999888888889999999999988874 4553
No 154
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=83.57 E-value=1.8 Score=39.15 Aligned_cols=74 Identities=27% Similarity=0.306 Sum_probs=46.0
Q ss_pred CHHHHHHHhhhCC---CceEEEEe-eCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q psy14406 1 EIGECFDSLSENE---ECRVIILS-AAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKP 76 (275)
Q Consensus 1 el~~~l~~~~~d~---~v~~vVl~-g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP 76 (275)
++..+|+.++..+ .+-+|||. |.| ++ -||-.| .. ..+.+++..+|.|
T Consensus 59 ~I~~al~~~~~~~~~~~~Dviii~RGGG-s~---eDL~~F---N~----------------------e~varai~~~~~P 109 (319)
T PF02601_consen 59 SIVSALRKANEMGQADDFDVIIIIRGGG-SI---EDLWAF---ND----------------------EEVARAIAASPIP 109 (319)
T ss_pred HHHHHHHHHHhccccccccEEEEecCCC-Ch---HHhccc---Ch----------------------HHHHHHHHhCCCC
Confidence 3667888887665 56677764 533 11 133222 11 3567889999999
Q ss_pred EEEEECchhchHHHHHHHHCCEEEEeCCc
Q psy14406 77 VISAVHGACIGGGMSLITAADIRYATKDA 105 (275)
Q Consensus 77 ~Ia~v~G~a~GgG~~lal~~D~rva~~~a 105 (275)
||++| ||-.-- .-.=+.+|+|..|+++
T Consensus 110 visaI-GHe~D~-ti~D~vAd~ra~TPta 136 (319)
T PF02601_consen 110 VISAI-GHETDF-TIADFVADLRAPTPTA 136 (319)
T ss_pred EEEec-CCCCCc-hHHHHHHHhhCCCHHH
Confidence 99998 444322 3344567788777764
No 155
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=78.40 E-value=3.5 Score=39.22 Aligned_cols=72 Identities=28% Similarity=0.329 Sum_probs=44.6
Q ss_pred HHHHHHHhhhCCCceEEEEe-eCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 2 IGECFDSLSENEECRVIILS-AAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 2 l~~~l~~~~~d~~v~~vVl~-g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
+..+++.++..+++.+|||. |.| ++ -||-.| .. ..+.++++.+|.|||++
T Consensus 175 i~~al~~~~~~~~~dviii~RGGG-s~---eDL~~F---n~----------------------e~~~rai~~~~~Pvis~ 225 (432)
T TIGR00237 175 IVESIELANTKNECDVLIVGRGGG-SL---EDLWSF---ND----------------------EKVARAIFLSKIPIISA 225 (432)
T ss_pred HHHHHHHhhcCCCCCEEEEecCCC-CH---HHhhhc---Cc----------------------HHHHHHHHcCCCCEEEe
Confidence 56778888776667777774 432 21 133222 11 35678899999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCC
Q psy14406 81 VHGACIGGGMSLITAADIRYATKD 104 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~ 104 (275)
| ||-.-- .-.=+.+|.|..|++
T Consensus 226 i-GHe~D~-ti~D~vAd~ra~TPt 247 (432)
T TIGR00237 226 V-GHETDF-TISDFVADLRAPTPS 247 (432)
T ss_pred c-CcCCCc-cHHHHhhhccCCCcH
Confidence 8 333211 223456788888876
No 156
>KOG0840|consensus
Probab=78.12 E-value=14 Score=32.47 Aligned_cols=20 Identities=45% Similarity=0.698 Sum_probs=17.6
Q ss_pred CCCCHHHHHHcCCcccccCC
Q psy14406 144 RKIEAAEARECGLVSKLYDD 163 (275)
Q Consensus 144 ~~~~a~eA~~~GLv~~vv~~ 163 (275)
+-++|.||++.||+|+|+..
T Consensus 238 ~fmsa~EA~eyGliD~v~~~ 257 (275)
T KOG0840|consen 238 RFMSAEEAKEYGLIDKVIDH 257 (275)
T ss_pred ccCCHHHHHHhcchhhhhcC
Confidence 45899999999999999863
No 157
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=77.97 E-value=6.5 Score=31.21 Aligned_cols=52 Identities=25% Similarity=0.436 Sum_probs=27.9
Q ss_pred HHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Q psy14406 2 IGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAV 81 (275)
Q Consensus 2 l~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~v 81 (275)
+.+.++.+.+||+.++|++.-++ +.-| +.+.+..++.... ||+|+..
T Consensus 42 ~~d~l~~~~~D~~t~~I~ly~E~--~~d~------------------------------~~f~~~~~~a~~~-KPVv~lk 88 (138)
T PF13607_consen 42 FADLLEYLAEDPDTRVIVLYLEG--IGDG------------------------------RRFLEAARRAARR-KPVVVLK 88 (138)
T ss_dssp HHHHHHHHCT-SS--EEEEEES----S-H------------------------------HHHHHHHHHHCCC-S-EEEEE
T ss_pred HHHHHHHHhcCCCCCEEEEEccC--CCCH------------------------------HHHHHHHHHHhcC-CCEEEEe
Confidence 56789999999999999998875 1001 1123334555555 9999999
Q ss_pred Cchhc
Q psy14406 82 HGACI 86 (275)
Q Consensus 82 ~G~a~ 86 (275)
-|..-
T Consensus 89 ~Grt~ 93 (138)
T PF13607_consen 89 AGRTE 93 (138)
T ss_dssp -----
T ss_pred CCCch
Confidence 99743
No 158
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=72.41 E-value=5.5 Score=37.76 Aligned_cols=74 Identities=23% Similarity=0.283 Sum_probs=44.2
Q ss_pred CHHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14406 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 80 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~ 80 (275)
|+.+++..++..+++.++|+-=. |+-+.++-.+. + ..+.++++.++.|+|++
T Consensus 180 eIv~aI~~an~~~~~DvlIVaRG------GGSiEDLW~FN--------------------d--E~vaRAi~~s~iPvISA 231 (440)
T COG1570 180 EIVEAIERANQRGDVDVLIVARG------GGSIEDLWAFN--------------------D--EIVARAIAASRIPVISA 231 (440)
T ss_pred HHHHHHHHhhccCCCCEEEEecC------cchHHHHhccC--------------------h--HHHHHHHHhCCCCeEee
Confidence 45677777777777777776321 23333332221 1 24678899999999999
Q ss_pred ECchhchHHHHHHHHCCEEEEeCC
Q psy14406 81 VHGACIGGGMSLITAADIRYATKD 104 (275)
Q Consensus 81 v~G~a~GgG~~lal~~D~rva~~~ 104 (275)
| ||-.-- .-.=+.+|+|-.|++
T Consensus 232 V-GHEtD~-tL~DfVAD~RApTPT 253 (440)
T COG1570 232 V-GHETDF-TLADFVADLRAPTPT 253 (440)
T ss_pred c-ccCCCc-cHHHhhhhccCCCch
Confidence 8 333211 122345677877776
No 159
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=70.63 E-value=11 Score=36.58 Aligned_cols=115 Identities=18% Similarity=0.195 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHhhcCCCcEEEEECchhchHHHHHHH----HCCEEEEeCCceEeccccccCcccCchhhhhhhH-HhC
Q psy14406 57 RKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLIT----AADIRYATKDAWFTLKEVDIGLTADVGALQRLPR-IIG 131 (275)
Q Consensus 57 ~~~~~~~~~~~~~l~~~~kP~Ia~v~G~a~GgG~~lal----~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r-~~G 131 (275)
...++.-..++.++.....|.|..|-|.+.|||...+. ..|+.+|.+++ ++++.-+-|+...+.+ .+.
T Consensus 380 ~giik~Gakl~~A~aeatVPkitvI~rkayGga~~~M~~~~~~~~~~~AwP~a-------~iaVMG~egAv~i~~~k~l~ 452 (526)
T COG4799 380 GGIIKHGAKLLYAVAEATVPKITVITRKAYGGAYYVMGGKALGPDFNYAWPTA-------EIAVMGPEGAVSILYRKELA 452 (526)
T ss_pred ChHHHhhhHHHhhHhhccCCeEEEEecccccceeeeecCccCCCceeEecCcc-------eeeecCHHHHHHHHHHHHhh
Confidence 45667777889999999999999999999999875433 35555555555 4445444444333332 211
Q ss_pred cHHH-HH---------HHHhcCCCCCHHHHHHcCCcccccCChhHHHHHHHHHHHHHh
Q psy14406 132 NQSL-VN---------EIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIA 179 (275)
Q Consensus 132 ~~~~-a~---------~l~ltG~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la 179 (275)
...+ .. .--+.-+-.++--|.+.|++|.|+++ .+.......-...+.
T Consensus 453 ~~~~~~~~~~~~~~~~~~eY~~~~~~p~~aa~r~~iD~vI~p-~~tR~~L~~~l~~~~ 509 (526)
T COG4799 453 AAERPEEREALLRKQLIAEYEEQFSNPYYAAERGYIDAVIDP-ADTRAVLGRALSALA 509 (526)
T ss_pred cccCchhHHHHHHHHHHHHHHHhccchHHHHHhCCCCcccCH-HHHHHHHHHHHHHHh
Confidence 1000 00 00112222456667789999999987 555554444333333
No 160
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=70.17 E-value=12 Score=33.45 Aligned_cols=22 Identities=9% Similarity=0.291 Sum_probs=20.2
Q ss_pred HHHHHHHhhhCCCceEEEEeeC
Q psy14406 2 IGECFDSLSENEECRVIILSAA 23 (275)
Q Consensus 2 l~~~l~~~~~d~~v~~vVl~g~ 23 (275)
+.++|+.+++||..++||+-|.
T Consensus 188 fid~L~~fe~Dp~T~~ivmiGE 209 (293)
T COG0074 188 FIDALEMFEADPETEAIVMIGE 209 (293)
T ss_pred HHHHHHHHhcCccccEEEEEec
Confidence 5689999999999999999997
No 161
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=69.78 E-value=7 Score=37.11 Aligned_cols=40 Identities=30% Similarity=0.229 Sum_probs=27.6
Q ss_pred HHHHHHhhcCCCcEEEEECchhchHHHHHHHHCCEEEEeCCc
Q psy14406 64 QKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDA 105 (275)
Q Consensus 64 ~~~~~~l~~~~kP~Ia~v~G~a~GgG~~lal~~D~rva~~~a 105 (275)
..+.+++..+|.|||++| ||-.-- .-.=+.+|.|..|+++
T Consensus 214 e~v~~ai~~~~~Pvis~I-GHE~D~-tl~D~vAd~ra~TPta 253 (438)
T PRK00286 214 EAVARAIAASRIPVISAV-GHETDF-TIADFVADLRAPTPTA 253 (438)
T ss_pred HHHHHHHHcCCCCEEEec-cCCCCc-cHHHHhhhccCCChHH
Confidence 356788999999999998 443311 2344567888888763
No 162
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=65.86 E-value=13 Score=30.07 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=20.3
Q ss_pred HHHHHHHhhhCCCceEEEEeeCCC
Q psy14406 2 IGECFDSLSENEECRVIILSAAGK 25 (275)
Q Consensus 2 l~~~l~~~~~d~~v~~vVl~g~G~ 25 (275)
..++|..+.+||++++|+|-+.++
T Consensus 61 ~~~~l~~~~~Dp~v~vIlvd~~~G 84 (153)
T PF00549_consen 61 RNEALEIEAADPEVKVILVDIVGG 84 (153)
T ss_dssp HHHHHHHHHTSTTESEEEEEEESS
T ss_pred HHHHHHHHhcCCCccEEEEEeccc
Confidence 357888899999999999998654
No 163
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=65.76 E-value=15 Score=31.83 Aligned_cols=98 Identities=16% Similarity=0.186 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEECchhchHHH-HHHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHHhCcHH
Q psy14406 56 LRKLITTYQKSISSLERCPKPVISAVHGACIGGGM-SLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQS 134 (275)
Q Consensus 56 ~~~~~~~~~~~~~~l~~~~kP~Ia~v~G~a~GgG~-~lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~~G~~~ 134 (275)
++..+..+.+.+...+...-|+|+.|-|.+++||| .-.+.+|-.|+-++ +.+-..+-.. ..+..++- -.
T Consensus 87 i~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~rl~AL~g-------a~i~vM~~~s-~ARVTk~~--ve 156 (234)
T PF06833_consen 87 INQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANRLIALPG-------AMIHVMGKPS-AARVTKRP--VE 156 (234)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcchhcCCC-------CeeecCChHH-hHHHhhcC--HH
Confidence 45666667777777888899999999999999998 66777787776553 3332322221 22333221 12
Q ss_pred HHHHHHhcCCC--CCHHHHHHcCCcccccCC
Q psy14406 135 LVNEIAFTARK--IEAAEARECGLVSKLYDD 163 (275)
Q Consensus 135 ~a~~l~ltG~~--~~a~eA~~~GLv~~vv~~ 163 (275)
.-.++.-+--+ .+.+--.++|.++++++.
T Consensus 157 ~Le~la~s~PvfA~gi~ny~~lG~l~~l~~~ 187 (234)
T PF06833_consen 157 ELEELAKSVPVFAPGIENYAKLGALDELWDG 187 (234)
T ss_pred HHHHHhhcCCCcCCCHHHHHHhccHHHHhcc
Confidence 33345545444 345567789999998873
No 164
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=65.31 E-value=16 Score=33.22 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.6
Q ss_pred HHHHHHHhhhCCCceEEEEeeCC
Q psy14406 2 IGECFDSLSENEECRVIILSAAG 24 (275)
Q Consensus 2 l~~~l~~~~~d~~v~~vVl~g~G 24 (275)
+.+.|+.+.+||+.++|++.+++
T Consensus 212 ~~D~L~~~~~Dp~T~~Ivl~~E~ 234 (317)
T PTZ00187 212 FIDCLKLFLNDPETEGIILIGEI 234 (317)
T ss_pred HHHHHHHHhhCCCccEEEEEEec
Confidence 56889999999999999999984
No 165
>smart00250 PLEC Plectin repeat.
Probab=64.77 E-value=5.7 Score=23.93 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=17.4
Q ss_pred cCCCCCHHHHHHcCCcccc
Q psy14406 142 TARKIEAAEARECGLVSKL 160 (275)
Q Consensus 142 tG~~~~a~eA~~~GLv~~v 160 (275)
||+++|-.||++.||++.-
T Consensus 18 t~~~lsv~eA~~~glid~~ 36 (38)
T smart00250 18 TGQKLSVEEALRRGLIDPE 36 (38)
T ss_pred CCCCcCHHHHHHcCCCCcc
Confidence 8999999999999999863
No 166
>KOG0540|consensus
Probab=64.62 E-value=62 Score=30.92 Aligned_cols=131 Identities=17% Similarity=0.133 Sum_probs=77.3
Q ss_pred HHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEECchhc
Q psy14406 7 DSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACI 86 (275)
Q Consensus 7 ~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~v~G~a~ 86 (275)
-++.....+-.|.+...++ |-.|.+.... ...+.-..++........|-|..+.|.+.
T Consensus 377 Ie~c~q~~IPLi~l~ni~G-fm~g~~~e~~---------------------gIaK~gAklv~a~a~akvpkITiit~~sy 434 (536)
T KOG0540|consen 377 IELCDQRNIPLIFLQNITG-FMVGRAAEAG---------------------GIAKHGAKLVYAVACAKVPKITIITGGSY 434 (536)
T ss_pred HHHHHhcCCcEEEEEccCC-ccccchhhhh---------------------chhhhhhhhhhhhhhccCceEEEEecCcc
Confidence 3444555666666665554 7777665432 22233345677777889999999999999
Q ss_pred hHHHH---HHHHCCEEEEeCCceEeccccccCcccCchhhhhhhHH-----hCcHHHHHHHHhcCCCCCHHHHHHcCCcc
Q psy14406 87 GGGMS---LITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRI-----IGNQSLVNEIAFTARKIEAAEARECGLVS 158 (275)
Q Consensus 87 GgG~~---lal~~D~rva~~~a~f~~pe~~~G~~p~~g~~~~l~r~-----~G~~~~a~~l~ltG~~~~a~eA~~~GLv~ 158 (275)
||-.. -.+..|+.++.++|++++-..+ ++...+.+. +.......+.+ |.++. +...||+|
T Consensus 435 GG~y~m~sr~~~gd~~yawP~A~IavmG~~-------~a~~Vi~q~~~e~a~~~~~~~~E~f--~npy~---a~~Rg~~D 502 (536)
T KOG0540|consen 435 GGNYAMCSRGYSGDINYAWPNARIAVMGGK-------QAANVIFQITLEKAVALKAPYIEKF--GNPYY---AAARGWDD 502 (536)
T ss_pred CCcccccccccCCceeEEcccceeeecccc-------chhhhhhhhhhhhhhhhcchHHHHh--cCccH---HHHhhccc
Confidence 97555 4566788888888877754331 111112211 11111222222 55554 46789999
Q ss_pred cccCChhHHHHHHH
Q psy14406 159 KLYDDKESLLAGAI 172 (275)
Q Consensus 159 ~vv~~~~~l~~~a~ 172 (275)
.|+++ .+.....-
T Consensus 503 ~II~p-~~tR~vl~ 515 (536)
T KOG0540|consen 503 GIIDP-SDTRKVLG 515 (536)
T ss_pred cccCh-hHhhHHHH
Confidence 99987 44544433
No 167
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=63.02 E-value=18 Score=33.25 Aligned_cols=39 Identities=13% Similarity=0.230 Sum_probs=32.1
Q ss_pred cccccccccCCcchhhHHHHHhccCccChHHHHHHHHHh
Q psy14406 225 VSPERMSHDCPECLIGSIGVFHTLDRVDLNQCDEDLALL 263 (275)
Q Consensus 225 ~~~~~~~~~sp~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 263 (275)
..+..+.+.||.+++.+.+.++++...+++++++.....
T Consensus 258 ~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~ 296 (342)
T PRK05617 258 KTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRL 296 (342)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 345667788999999999999999888999998876433
No 168
>PLN02522 ATP citrate (pro-S)-lyase
Probab=60.31 E-value=20 Score=35.58 Aligned_cols=23 Identities=9% Similarity=0.289 Sum_probs=20.7
Q ss_pred HHHHHHHhhhCCCceEEEEeeC-C
Q psy14406 2 IGECFDSLSENEECRVIILSAA-G 24 (275)
Q Consensus 2 l~~~l~~~~~d~~v~~vVl~g~-G 24 (275)
+.+.|+.+++||+.++|++.++ |
T Consensus 210 ~~D~L~~~~~Dp~Tk~IvlygEiG 233 (608)
T PLN02522 210 LSDHVLRFNNIPQIKMIVVLGELG 233 (608)
T ss_pred HHHHHHHHhcCCCCCEEEEEEecC
Confidence 5788999999999999999998 5
No 169
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=59.29 E-value=24 Score=31.91 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=19.1
Q ss_pred HHHHHHHhhhCCCceEEEEeeCC
Q psy14406 2 IGECFDSLSENEECRVIILSAAG 24 (275)
Q Consensus 2 l~~~l~~~~~d~~v~~vVl~g~G 24 (275)
+.+.|+.+.+||+.++|++..++
T Consensus 193 ~~d~L~yl~~Dp~T~~I~ly~E~ 215 (300)
T PLN00125 193 FVDCLEKFVKDPQTEGIILIGEI 215 (300)
T ss_pred HHHHHHHHhhCCCCcEEEEEecc
Confidence 56788888889999999988874
No 170
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=54.87 E-value=4.6 Score=25.39 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=17.3
Q ss_pred hcCCCCCHHHHHHcCCccccc
Q psy14406 141 FTARKIEAAEARECGLVSKLY 161 (275)
Q Consensus 141 ltG~~~~a~eA~~~GLv~~vv 161 (275)
-||++++-.+|++.||+|.-.
T Consensus 17 ~tg~~lsv~~A~~~glId~~~ 37 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDSDT 37 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-HHH
T ss_pred CCCeEEcHHHHHHCCCcCHHH
Confidence 378999999999999998643
No 171
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=43.18 E-value=70 Score=30.51 Aligned_cols=82 Identities=18% Similarity=0.310 Sum_probs=46.9
Q ss_pred HHHHHHHhhhCCCceEEEEeeCCCCcccCCCcchhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Q psy14406 2 IGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAV 81 (275)
Q Consensus 2 l~~~l~~~~~d~~v~~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~Ia~v 81 (275)
+.+.|+.+.+||+.++|++..++ + +.- ++| .+..++... .||+|+..
T Consensus 191 ~~d~l~~l~~D~~t~~I~ly~E~--~------~~~--------------------~~f----~~aa~~a~~-~KPVv~~k 237 (447)
T TIGR02717 191 ESDLLEYLADDPDTKVILLYLEG--I------KDG--------------------RKF----LKTAREISK-KKPIVVLK 237 (447)
T ss_pred HHHHHHHHhhCCCCCEEEEEecC--C------CCH--------------------HHH----HHHHHHHcC-CCCEEEEe
Confidence 56789999999999999999875 1 100 111 222334444 89999999
Q ss_pred CchhchHHHHHHHHCCEEEEeCCceEeccccccCcc
Q psy14406 82 HGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLT 117 (275)
Q Consensus 82 ~G~a~GgG~~lal~~D~rva~~~a~f~~pe~~~G~~ 117 (275)
-|..- .|...+...-=-++.++..|.--.-+.|++
T Consensus 238 ~Grs~-~g~~aa~sHtgalag~~~~~~a~~~~~Gv~ 272 (447)
T TIGR02717 238 SGTSE-AGAKAASSHTGALAGSDEAYDAAFKQAGVI 272 (447)
T ss_pred cCCCh-hhhhhhhhccccccChHHHHHHHHHHCCeE
Confidence 98874 333333322222333443333333344443
No 172
>PRK04342 DNA topoisomerase VI subunit A; Provisional
Probab=40.34 E-value=75 Score=29.57 Aligned_cols=45 Identities=20% Similarity=0.229 Sum_probs=28.0
Q ss_pred CCcEEEEECchhchHHHHHHHH-CCEEEEeCCceEeccccc-cCccc
Q psy14406 74 PKPVISAVHGACIGGGMSLITA-ADIRYATKDAWFTLKEVD-IGLTA 118 (275)
Q Consensus 74 ~kP~Ia~v~G~a~GgG~~lal~-~D~rva~~~a~f~~pe~~-~G~~p 118 (275)
+.|+.+.+++...|--.....- ....-+.++..+..|..+ +|+.|
T Consensus 241 ~lpv~~l~D~DP~G~~I~~tyk~GS~~~a~~s~~l~~P~~kwlGl~~ 287 (367)
T PRK04342 241 GLPVYVFTDGDPWGYYIYSVVKYGSIKLAHLSERLATPDAKFIGVTP 287 (367)
T ss_pred CCCEEEEECCCccHHHHHHHHHhCchhhhhhhhhccCCCCEEecCcH
Confidence 7999999999998753322221 122334455567777766 66665
No 173
>PRK06091 membrane protein FdrA; Validated
Probab=40.21 E-value=77 Score=31.19 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=17.0
Q ss_pred HHHHHHHhhhCCCceEEEEeeCC
Q psy14406 2 IGECFDSLSENEECRVIILSAAG 24 (275)
Q Consensus 2 l~~~l~~~~~d~~v~~vVl~g~G 24 (275)
+.+.|+.+.+||+.++|++.+..
T Consensus 240 ~~D~L~~L~~DP~TkvIvly~kp 262 (555)
T PRK06091 240 ALTALEMLSADEKSEVIAFVSKP 262 (555)
T ss_pred HHHHHHHHhhCCCCcEEEEEEec
Confidence 45677777888888888887753
No 174
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=38.16 E-value=43 Score=30.00 Aligned_cols=23 Identities=9% Similarity=0.260 Sum_probs=20.2
Q ss_pred HHHHHHHhhhCCCceEEEEeeCC
Q psy14406 2 IGECFDSLSENEECRVIILSAAG 24 (275)
Q Consensus 2 l~~~l~~~~~d~~v~~vVl~g~G 24 (275)
+.+.|+.+.+||+.++|++..++
T Consensus 186 ~~D~l~~l~~Dp~T~~I~lylE~ 208 (286)
T TIGR01019 186 FIDVLEAFEKDPETEAIVMIGEI 208 (286)
T ss_pred HHHHHHHHhhCCCCcEEEEEEec
Confidence 56889999999999999999874
No 175
>KOG0610|consensus
Probab=34.99 E-value=30 Score=32.74 Aligned_cols=71 Identities=18% Similarity=0.174 Sum_probs=41.9
Q ss_pred cccCCCcchhhhhchhhhhhHHHHHHHHHHHHHH--HHHHHHHHHhhcCCCcEEEEE--CchhchHHHHHHHHCCEE
Q psy14406 27 FTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI--TTYQKSISSLERCPKPVISAV--HGACIGGGMSLITAADIR 99 (275)
Q Consensus 27 FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~kP~Ia~v--~G~a~GgG~~lal~~D~r 99 (275)
||.|+||..+.+-++..--++...+- +..+.+ -.|.+++--+++==||-=..| +||.|=.=+.|++-|+.+
T Consensus 158 yCpGGdL~~LrqkQp~~~fse~~aRF--YaAEvl~ALEYLHmlGivYRDLKPENILvredGHIMLsDFDLS~~~~~~ 232 (459)
T KOG0610|consen 158 YCPGGDLHSLRQKQPGKRFSESAARF--YAAEVLLALEYLHMLGIVYRDLKPENILVREDGHIMLSDFDLSLRCPVS 232 (459)
T ss_pred cCCCccHHHHHhhCCCCccchhhHHH--HHHHHHHHHHHHHhhceeeccCCcceeEEecCCcEEeeeccccccCCCC
Confidence 89999999987754422112222211 111111 123344444555557754454 999999999999999763
No 176
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=34.00 E-value=54 Score=29.47 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=19.7
Q ss_pred HHHHHHHhhhCCCceEEEEeeCC
Q psy14406 2 IGECFDSLSENEECRVIILSAAG 24 (275)
Q Consensus 2 l~~~l~~~~~d~~v~~vVl~g~G 24 (275)
+.+.|+.+.+||+.++|++..++
T Consensus 188 ~~D~l~~l~~Dp~T~~I~lylE~ 210 (291)
T PRK05678 188 FIDVLEAFEEDPETEAIVMIGEI 210 (291)
T ss_pred HHHHHHHHhhCCCCcEEEEEEec
Confidence 56788999999999999998874
No 177
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=29.48 E-value=1.2e+02 Score=28.19 Aligned_cols=90 Identities=10% Similarity=-0.037 Sum_probs=62.4
Q ss_pred hcCCCCCHHHHH-HcCCcccccCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcccCCc
Q psy14406 141 FTARKIEAAEAR-ECGLVSKLYDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRR 219 (275)
Q Consensus 141 ltG~~~~a~eA~-~~GLv~~vv~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 219 (275)
..|+..+++++. ..-|+.....+...|++.+.+++.+++..-|..+..+|..++.-.........+....|...... -
T Consensus 238 ~~~~~~~~~~~~~~k~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 316 (360)
T TIGR03200 238 VHGEFKAGDELKAGKELIKQGTIDLSLLDEAVEALCAKLLNTFPECLTKSIEELRKPKLFAWNQNKENSRAWLALNMM-N 316 (360)
T ss_pred hcCCCcchhHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHhchHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHhhcc-c
Confidence 345555543332 22333333222256778888999999999999999999999887666667777777777776666 5
Q ss_pred hHHhcccccccc
Q psy14406 220 NCNKGVSPERMS 231 (275)
Q Consensus 220 ~~~e~~~~~~~~ 231 (275)
+..+|.++|...
T Consensus 317 ~~~~~~~~~~~~ 328 (360)
T TIGR03200 317 EARTGFRAFNEG 328 (360)
T ss_pred ccchhhHHHhcc
Confidence 777888888874
No 178
>PLN00060 meiotic recombination protein SPO11-2; Provisional
Probab=28.92 E-value=1.3e+02 Score=28.25 Aligned_cols=25 Identities=12% Similarity=0.204 Sum_probs=17.5
Q ss_pred CCcEEEEECchhchHHHHHHHHCCEEEEe
Q psy14406 74 PKPVISAVHGACIGGGMSLITAADIRYAT 102 (275)
Q Consensus 74 ~kP~Ia~v~G~a~GgG~~lal~~D~rva~ 102 (275)
..|+.++++|...|. ...|-|...+
T Consensus 263 ~lPv~~LvD~DP~Gi----~I~~tYkyGS 287 (384)
T PLN00060 263 NLPILALVDWNPAGL----AILCTYKFGS 287 (384)
T ss_pred CCCEEEEECCCcchH----HHHHHhhcCc
Confidence 589999999999864 3344444443
No 179
>PRK14053 methyltransferase; Provisional
Probab=27.25 E-value=69 Score=26.74 Aligned_cols=37 Identities=16% Similarity=0.251 Sum_probs=29.1
Q ss_pred HHHHHHHhhhCCCceEEEEeeCC-CCcccCCCcchhhh
Q psy14406 2 IGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLS 38 (275)
Q Consensus 2 l~~~l~~~~~d~~v~~vVl~g~G-~~FcaG~Dl~~~~~ 38 (275)
+...+.++-.||++|.+|+.|.- +..-+|--|..++.
T Consensus 52 IEKvI~NvisNpNIRflilcG~Ev~GHltGqsL~aL~~ 89 (194)
T PRK14053 52 VEKIIVNVISNSNIRYVLLCGGESRGHLAGHSLLAIHA 89 (194)
T ss_pred HHHHHHHhhcCCCceEEEEecCccCCccccHHHHHHHH
Confidence 45677788899999999999987 67777776666654
No 180
>KOG1255|consensus
Probab=25.44 E-value=1.4e+02 Score=26.36 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.4
Q ss_pred HHHHHHHhhhCCCceEEEEeeC
Q psy14406 2 IGECFDSLSENEECRVIILSAA 23 (275)
Q Consensus 2 l~~~l~~~~~d~~v~~vVl~g~ 23 (275)
+.++|+.+-+||..+.||+-|+
T Consensus 219 FID~L~vFl~D~~t~GIiliGE 240 (329)
T KOG1255|consen 219 FIDCLEVFLEDPETEGIILIGE 240 (329)
T ss_pred HHHHHHHHhcCcccceEEEEec
Confidence 5688899999999999999886
No 181
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=25.01 E-value=68 Score=26.48 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=27.4
Q ss_pred HHHHHHHhhhCCCceEEEEeeCC-CCcccCCCcchhh
Q psy14406 2 IGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGML 37 (275)
Q Consensus 2 l~~~l~~~~~d~~v~~vVl~g~G-~~FcaG~Dl~~~~ 37 (275)
+...+.++-.||++|.+|+.|.- +..-+|--|..++
T Consensus 55 IEKvI~NvisNpnIRflilcG~Ev~GH~~Gqsl~aLh 91 (176)
T PF04208_consen 55 IEKVIANVISNPNIRFLILCGSEVKGHLTGQSLLALH 91 (176)
T ss_pred HHHHHHHHhcCCCceEEEEecCccCCCcchHHHHHHH
Confidence 45677888899999999999987 6666665555543
No 182
>TIGR01111 mtrA N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit A. coenzyme M methyltransferase subunit A in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.
Probab=23.36 E-value=88 Score=27.00 Aligned_cols=37 Identities=16% Similarity=0.290 Sum_probs=29.1
Q ss_pred HHHHHHHhhhCCCceEEEEeeCC-CCcccCCCcchhhh
Q psy14406 2 IGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLS 38 (275)
Q Consensus 2 l~~~l~~~~~d~~v~~vVl~g~G-~~FcaG~Dl~~~~~ 38 (275)
+...+.++-.||++|.+|+.|.- +..-+|--|..++.
T Consensus 59 IEKvIaNvisNpNIRflilcG~Ev~GHltGqsL~aLh~ 96 (238)
T TIGR01111 59 IEKVVANIISNPNIRFLILCGSEVQGHITGQSFKALHE 96 (238)
T ss_pred HHHHHHHHhcCCCceEEEEecCcccCccccHHHHHHHH
Confidence 45677788899999999999987 67777776666554
No 183
>PRK00964 tetrahydromethanopterin S-methyltransferase subunit A; Provisional
Probab=23.27 E-value=87 Score=26.98 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=28.5
Q ss_pred HHHHHHHhhhCCCceEEEEeeCC-CCcccCCCcchhhh
Q psy14406 2 IGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLS 38 (275)
Q Consensus 2 l~~~l~~~~~d~~v~~vVl~g~G-~~FcaG~Dl~~~~~ 38 (275)
+...+.++-.||++|.+||.|.- +..-+|--|..++.
T Consensus 59 IEKvI~NvisNpNIRflilcG~Ev~GH~tGqsl~aL~~ 96 (225)
T PRK00964 59 IEKVIANVISNPNIRFLILCGSEVQGHITGQSLKALHE 96 (225)
T ss_pred HHHHHHHHhcCCCceEEEEecCccCCccccHHHHHHHH
Confidence 45677788899999999999987 66667766665543
No 184
>PF12268 DUF3612: Protein of unknown function (DUF3612); InterPro: IPR022055 This domain family is found in bacteria, and is approximately 180 amino acids in length. The family is found in association with PF01381 from PFAM.
Probab=22.30 E-value=33 Score=27.60 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=19.5
Q ss_pred CceEEEEeeCCCCcccCCCcchhhh
Q psy14406 14 ECRVIILSAAGKIFTAGLDLSGMLS 38 (275)
Q Consensus 14 ~v~~vVl~g~G~~FcaG~Dl~~~~~ 38 (275)
++++.=+.|.....|+|+||+....
T Consensus 79 Si~v~D~Agn~hVLCaGIDLNPAi~ 103 (178)
T PF12268_consen 79 SIKVKDLAGNNHVLCAGIDLNPAID 103 (178)
T ss_pred ccccccCCCCceeEEecccCCHhHh
Confidence 5566666787899999999987544
No 185
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=22.16 E-value=62 Score=24.69 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=17.8
Q ss_pred CHHHHHHHhhhCCCceEEEEeeC
Q psy14406 1 EIGECFDSLSENEECRVIILSAA 23 (275)
Q Consensus 1 el~~~l~~~~~d~~v~~vVl~g~ 23 (275)
++.+.++.+++|++|++|++---
T Consensus 74 el~~~i~~lN~D~~V~GIlvq~P 96 (117)
T PF00763_consen 74 ELLELIEKLNEDPSVHGILVQLP 96 (117)
T ss_dssp HHHHHHHHHHH-TT-SEEEEESS
T ss_pred HHHHHHHHHhCCCCCCEEEEcCC
Confidence 46788999999999999999753
No 186
>PF11524 SeleniumBinding: Selenium binding protein; InterPro: IPR021603 Selenium is an important nutrient which needs to be regulated since lack of the nutrient leads to cell abnormalities and high concentrations are toxic.SeBP regulates the level of free selenium in the cell by sequestering the nutrient during transport. SeBP acts as a pentamer and delivers the selenium to the selenophosphate synthetase enzyme []. Each subunit is composed of an alpha helix on top of a four stranded twisted ss sheet, stabilised by hydrogen bonds []. members of this entry are restricted to the archaeal Methanococcales.; PDB: 2JZ7_D.
Probab=21.65 E-value=52 Score=23.28 Aligned_cols=37 Identities=22% Similarity=0.193 Sum_probs=24.9
Q ss_pred HhcCCCCCHHHHHHcCCcccccCChhHHHHHHHHHHH
Q psy14406 140 AFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGE 176 (275)
Q Consensus 140 ~ltG~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~ 176 (275)
+-|...+++-|.+.+|+|.+++++.+++.....+.++
T Consensus 9 ITT~~eIPGiely~~gIvS~~~envd~li~~lee~vk 45 (81)
T PF11524_consen 9 ITTTNEIPGIELYYLGIVSEASENVDELIKKLEEKVK 45 (81)
T ss_dssp EESSS--TTS--EEEEEEEEBSSSHHHHHHHHHHHHH
T ss_pred EEEcCcCCCeEEEeehhHHHHHhhHHHHHHHHHHHHH
Confidence 3466788999999999999999876766666555544
No 187
>PLN03037 lipase class 3 family protein; Provisional
Probab=20.47 E-value=91 Score=30.43 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=20.7
Q ss_pred CcEEEEECchhchHHHHHHHHCCEEE
Q psy14406 75 KPVISAVHGACIGGGMSLITAADIRY 100 (275)
Q Consensus 75 kP~Ia~v~G~a~GgG~~lal~~D~rv 100 (275)
..+=-.|.||-+||.+.+..+.|++.
T Consensus 316 e~~SItVTGHSLGGALAtLaA~DIa~ 341 (525)
T PLN03037 316 EEVSLTITGHSLGGALALLNAYEAAR 341 (525)
T ss_pred CcceEEEeccCHHHHHHHHHHHHHHH
Confidence 34444589999999999999988764
Done!