RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14406
(275 letters)
>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP:
c.14.1.3 PDB: 2vre_A
Length = 275
Score = 299 bits (769), Expect = e-103
Identities = 114/208 (54%), Positives = 160/208 (76%), Gaps = 1/208 (0%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
E+ ECF +S++ +CR +++S AGK+FT+G+DL M S + +DVAR + LR LI
Sbjct: 35 ELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQ-PPGDDVARIAWYLRDLI 93
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
+ YQK+ + +E+CPKPVI+A+HG CIGGG+ LI+A DIRY T+DA+F +KEVD+GL ADV
Sbjct: 94 SRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADV 153
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
G LQRLP++IGN+SLVNE+ FTARK+ A EA + GLVS+++ DK+ +L A L I+S
Sbjct: 154 GTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISS 213
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGLNQV 208
KSPVAVQG+K L++SRDH+V+E L+ +
Sbjct: 214 KSPVAVQGSKINLIYSRDHSVDESLDYM 241
>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics,
PSI-2, protein structure initiative; 1.70A {Bacillus
halodurans}
Length = 263
Score = 183 bits (466), Expect = 3e-57
Identities = 44/206 (21%), Positives = 88/206 (42%), Gaps = 10/206 (4%)
Query: 1 EIGECFDSLSENEECRVIILSAAGK-IFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 59
+ E + + IIL + + F++G L +L + ++ LR++
Sbjct: 35 SLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQSDVR--------LREV 86
Query: 60 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTAD 119
+ + + PK ++ ++G GGG +++ A D R A + A F +G++ D
Sbjct: 87 LHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPD 146
Query: 120 VGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIA 179
+GA LPRIIG + + + EA GL+ ++ ++K+ L + ++
Sbjct: 147 LGASYFLPRIIG-YEQTMNLLLEGKLFTSEEALRLGLIQEICENKQELQERVKNYLKAVS 205
Query: 180 SKSPVAVQGTKKTLVFSRDHAVEEGL 205
A+ TKK L +++ L
Sbjct: 206 EGYVPAIAATKKLLKGKAAEELKQQL 231
>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.35A {Mycobacterium abscessus}
Length = 290
Score = 178 bits (453), Expect = 6e-55
Identities = 66/206 (32%), Positives = 104/206 (50%), Gaps = 8/206 (3%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
+ +S + + R ++++ AGK F +G D + + I + +
Sbjct: 55 PFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPI-----PHIGGLTQPTIALRSM 109
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTA-D 119
+ I +L R +PVI+A++GA IGGG+ L A D+R A++DA+F ++ GLTA +
Sbjct: 110 ELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTASE 169
Query: 120 VGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIA 179
+G LPR IG S ++I T R ++A EA GLVS+ ESLL +GE IA
Sbjct: 170 LGLSYLLPRAIG-TSRASDIMLTGRDVDADEAERIGLVSRKVAS-ESLLEECYAIGERIA 227
Query: 180 SKSPVAVQGTKKTLVFSRDHAVEEGL 205
S ++ TK+T+ D A E
Sbjct: 228 GFSRPGIELTKRTIWSGLDAASLESH 253
>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural
genomics, PSI-2, protein ST initiative; 2.05A
{Streptomyces coelicolor A3}
Length = 279
Score = 177 bits (450), Expect = 1e-54
Identities = 50/206 (24%), Positives = 83/206 (40%), Gaps = 11/206 (5%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
++ + LS R ++L+ G+ F +G D+ ++ + L
Sbjct: 48 DLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMDTAR--------LLDFN 99
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLT-AD 119
+ + ++ CP PVI+A+HG G G L AAD R A F +GL+ D
Sbjct: 100 RMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGD 159
Query: 120 VGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIA 179
+GA LPR++G + + A EA GL+S+L ++ A L +A
Sbjct: 160 MGAAYLLPRVVG-LGHATRLLMLGDTVRAPEAERIGLISELTEE-GRADEAARTLARRLA 217
Query: 180 SKSPVAVQGTKKTLVFSRDHAVEEGL 205
+A TK L D + +
Sbjct: 218 DGPALAHAQTKALLTAELDMPLAAAV 243
>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A
2q2x_A
Length = 243
Score = 174 bits (444), Expect = 3e-54
Identities = 41/205 (20%), Positives = 82/205 (40%), Gaps = 19/205 (9%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
+ CF +++N++ +V+IL+ G F++G ++ + E D++
Sbjct: 34 GLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLIRKTRGEVEVLDLSGL-------- 85
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
+ C P+I+A+ G GGG+ L AD ++++ + + G T
Sbjct: 86 ---------ILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGFTPVG 136
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
L +G L E+ +T E E G+ + + +L A +LG+ IA
Sbjct: 137 ATSLILREKLG-SELAQEMIYTGENYRGKELAERGIPFPVVSR-QDVLNYAQQLGQKIAK 194
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
+++ K+ L E +
Sbjct: 195 SPRLSLVALKQHLSADIKAKFPEAI 219
>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.45A {Mycobacterium avium subsp}
Length = 276
Score = 175 bits (446), Expect = 5e-54
Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 14/205 (6%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
+ + L+++ R +++ AG+ F+AG D + L + + R
Sbjct: 59 GLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYLKELSADADLRAKTIRD-------- 110
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
++ + + RC PV++AV+G +G G SL+ +DI Y ++A+ V +GL A
Sbjct: 111 --GREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAAD 168
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
G P I L E A T +I A A E GL + + DD +A AI + I
Sbjct: 169 GGPLTWPLHIS-LLLAKEYALTGTRISAQRAVELGLANHVADD---PVAEAIACAKKILE 224
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
AV+ TK+ L + AV L
Sbjct: 225 LPQQAVESTKRVLNIHLERAVLASL 249
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET:
BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A*
1nzy_B*
Length = 269
Score = 175 bits (445), Expect = 5e-54
Identities = 46/205 (22%), Positives = 83/205 (40%), Gaps = 9/205 (4%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
E+ + + E++ ++++ A F AG L + + VA R
Sbjct: 34 EVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREI-------PLDKGVAGVRDHFRIAA 86
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
+ + I + R +PV++A++G GGG+ + A+D+ A F IG+ D
Sbjct: 87 LWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDT 146
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
L RI+G E+ T R + EA++ GLVS++Y + A ++ +A+
Sbjct: 147 ATSYSLARIVG-MRRAMELMLTNRTLYPEEAKDWGLVSRVYPK-DEFREVAWKVARELAA 204
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
K+ VEE
Sbjct: 205 APTHLQVMAKERFHAGWMQPVEECT 229
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase
superfamily, lyase; 1.85A {Thermus thermophilus HB8}
PDB: 3hrx_A
Length = 254
Score = 174 bits (443), Expect = 6e-54
Identities = 58/205 (28%), Positives = 92/205 (44%), Gaps = 15/205 (7%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
+ E+ E R ++L+ AG+ F+AG DL+ + +
Sbjct: 31 ALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEF-------------GDRKPDYEAHL 77
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
Y + + +L KP++ AV+G G GMSL D+R A A FT V IGL D
Sbjct: 78 RRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPDS 137
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
G LPR++G + E+ + ++ A EA GLV ++ E L+ A+ L + +A
Sbjct: 138 GLSFLLPRLVG-LAKAQELLLLSPRLSAEEALALGLVHRVVPA-EKLMEEALSLAKELAQ 195
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
A TKK L+ + ++ E L
Sbjct: 196 GPTRAYALTKKLLLETYRLSLTEAL 220
>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics,
structural genomics consortium, SGC, unknown function;
1.90A {Homo sapiens} PDB: 2fw2_A
Length = 261
Score = 174 bits (443), Expect = 8e-54
Identities = 48/205 (23%), Positives = 97/205 (47%), Gaps = 11/205 (5%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
E+ + ++ ++++LSA G +F GLD + + ++E K+
Sbjct: 37 EVQSALSTA-AADDSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRES--------TKMA 87
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
+ +++ + KP+I AV+G IG G S++ D+ +A + AWF G + D
Sbjct: 88 EAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDG 147
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
+ P+I+G + NE+ + RK+ A EA GLVS+++ + + + +AS
Sbjct: 148 CSTVMFPKIMG-GASANEMLLSGRKLTAQEACGKGLVSQVFWP-GTFTQEVMVRIKELAS 205
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
+PV ++ +K + + +E+
Sbjct: 206 CNPVVLEESKALVRCNMKMELEQAN 230
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038,
NPPSFA, national project on prote structural and
functional analyses; 2.00A {Geobacillus kaustophilus}
Length = 257
Score = 173 bits (442), Expect = 9e-54
Identities = 55/205 (26%), Positives = 91/205 (44%), Gaps = 15/205 (7%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
E+ + + R ++++ AG+ F AG DLSG+ + L
Sbjct: 34 EVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGV-------------TEEMDHGDVLR 80
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
+ Y + +L KPV++AV+GA G GMSL A D R ++ A F + +GL D
Sbjct: 81 SRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDA 140
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
G L LPR++G ++ E+A K+ A EA GL +K+ + E +++
Sbjct: 141 GHLYYLPRLVG-RAKALELAVLGEKVTAEEAAALGLATKVIPL-SDWEEEVKQFAERLSA 198
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
A+ K+ L S + + L
Sbjct: 199 MPTKAIGLIKRLLRESEETTFDRYL 223
>2fbm_A Y chromosome chromodomain protein 1, telomeric IS;
acetyltransferase, structural genomics, structural
genomics consortium, SGC, unknown function; 2.28A {Homo
sapiens} SCOP: c.14.1.3
Length = 291
Score = 174 bits (444), Expect = 1e-53
Identities = 45/205 (21%), Positives = 97/205 (47%), Gaps = 11/205 (5%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
EI +S + ++ ++++ SAAG +F GLD + + +++
Sbjct: 55 EIVNALNSAAADD-SKLVLFSAAGSVFCCGLDFGYFVKHLRNNRNTAS--------LEMV 105
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
T + +++ + KP++ +V+G IG G S++ D+ +A + AWF G + D
Sbjct: 106 DTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDG 165
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
+ P+++G ++ NE+ RK+ A EA GLVS+++ + + + +AS
Sbjct: 166 CSSITFPKMMG-KASANEMLIAGRKLTAREACAKGLVSQVFLT-GTFTQEVMIQIKELAS 223
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
+P+ ++ K + + +E+
Sbjct: 224 YNPIVLEECKALVRCNIKLELEQAN 248
>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural
genomics, riken S genomics/proteomics initiative, RSGI;
1.80A {Thermus thermophilus} SCOP: c.14.1.3
Length = 264
Score = 173 bits (441), Expect = 2e-53
Identities = 44/213 (20%), Positives = 78/213 (36%), Gaps = 16/213 (7%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
+ + L E R ++L G +F+AG + + V +
Sbjct: 41 GLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASHEALLRVFWE-------- 92
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
+ + P+PV++AV +G G++L AADI K + +G+ A
Sbjct: 93 --ARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGD 150
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
A+ P ++G + + EA GLV+ +D E + A+E+ E +A
Sbjct: 151 HAVLLWPLLVG-MAKAKYHLLLNEPLTGEEAERLGLVALAVED-EKVYEKALEVAERLAQ 208
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESK 213
A+ TK L +H L +
Sbjct: 209 GPKEALHHTKHAL----NHWYRSFLPHFELSLA 237
>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 1.60A {Mycobacterium
marinum M} PDB: 3q1t_A
Length = 272
Score = 173 bits (441), Expect = 2e-53
Identities = 44/193 (22%), Positives = 84/193 (43%), Gaps = 12/193 (6%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
++ + + + + + RV+++ GK F++G + + + + R+
Sbjct: 44 DLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDETIGDYEGRIRIMRE-------- 95
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
+ + +L KPV+SA+ G +G G+ + ADI A+ A +G+ A
Sbjct: 96 --ARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLGVAAGD 153
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
A P ++G + T + EA GLVS DD + +L A L E +A
Sbjct: 154 HAAICWPLLVG-MAKAKYYLLTCETLSGEEAERIGLVSTCVDD-DEVLPTATRLAENLAQ 211
Query: 181 KSPVAVQGTKKTL 193
+ A++ TK++L
Sbjct: 212 GAQNAIRWTKRSL 224
>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
marinum}
Length = 256
Score = 170 bits (433), Expect = 2e-52
Identities = 45/205 (21%), Positives = 92/205 (44%), Gaps = 13/205 (6%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
+ +++ + V++L+ +G+ F+AG DL+ M + + E
Sbjct: 37 ATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQARITDPNFSEG-----------K 85
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
++ I +L PKP+I AV+G +G G +++ AD+ + + A +G+ +
Sbjct: 86 FGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFTSLGVAPEA 145
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
+ LP+++G + + ++ I+A EA GLV ++ E LL A E++A+
Sbjct: 146 ASSYLLPQLVG-RQNAAWLLMSSEWIDAEEALRMGLVWRICSP-EELLPEARRHAEILAA 203
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
K ++ K T+V +
Sbjct: 204 KPISSLMAVKHTMVEPNRAQIAAAS 228
>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.10A {Mycobacterium abscessus}
Length = 265
Score = 170 bits (433), Expect = 3e-52
Identities = 52/205 (25%), Positives = 81/205 (39%), Gaps = 13/205 (6%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
E+ + + R +L G +FTAGLDL+ + + Q A +
Sbjct: 40 ELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAEIQGGASLTPEGGINPWQVDG- 98
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
+ KP++ AVHG + G+ L AADI A + A F EV+ G+
Sbjct: 99 ----------RQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPFG 148
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
GA R PR G TA +A EA G+V ++ + AI + + IA
Sbjct: 149 GATIRFPRTAG-WGNAMRWMLTADTFDAVEAHRIGIVQEIVPV-GEHVDTAIAIAQTIAR 206
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
++P+ VQ T + +
Sbjct: 207 QAPLGVQATLRNARLAVREGDAAAE 231
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2;
2.00A {Acinetobacter baumannii}
Length = 266
Score = 170 bits (433), Expect = 4e-52
Identities = 55/213 (25%), Positives = 97/213 (45%), Gaps = 18/213 (8%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
I + D +N++ RV++L A FTAG D+ + Q
Sbjct: 36 WIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFMGFVQNPNAGPAGQVP-------- 87
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
+ S R KP+I AV G IG G++++ AD+ +A A F + V +GL+ +
Sbjct: 88 --PFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEG 145
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
GA Q L + G E+ FTA+K A A + GLV+++ +D A A + + +
Sbjct: 146 GASQLLVKQAG-YHKAAELLFTAKKFNAETALQAGLVNEIVED---AYATAQATAQHLTA 201
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESK 213
+++ TK + H +++ + +D E++
Sbjct: 202 LPLASLKQTKALM----KHDLDQIIECIDHEAE 230
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center
for infectious disease, S coenzyme A, tuberculosis;
2.05A {Mycobacterium avium}
Length = 255
Score = 170 bits (432), Expect = 4e-52
Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 20/205 (9%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
E+ +E R ++L+ AG+ F +G DL+G + G
Sbjct: 37 ELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDTAG------------------AA 78
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
+ + ++ PKPVI+ VHGA +G G SL A D+ A ++F L +GL D
Sbjct: 79 DAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDG 138
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
GA LP +IG ++ + +A TA KI AA A E G++S + + + ++ ++
Sbjct: 139 GASALLPLLIG-RARTSRMAMTAEKISAATAFEWGMISHITSA-DEYESVLTDVLRSVSG 196
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
+A TK+ L + +E
Sbjct: 197 GPTLAFGWTKRALAAATLAELEPVQ 221
>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold,
inter-trimer contacts; 2.10A {Saccharomyces cerevisiae}
SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A
Length = 280
Score = 170 bits (432), Expect = 5e-52
Identities = 41/213 (19%), Positives = 79/213 (37%), Gaps = 8/213 (3%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
+GE + N + I+ ++G+ F++G D G+ + + + SK + +
Sbjct: 40 YLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYP-SETSKWVSNFV 98
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKD-AWFTLKEVDIGLTAD 119
+ + K +I ++G IG +L+ DI Y+ D + ++GL +
Sbjct: 99 ARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITE 158
Query: 120 VGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLL-----AGAIEL 174
G LP G + E + + E G +SK ++ S EL
Sbjct: 159 GGTTVSLPLKFG-TNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEEL 217
Query: 175 GELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQ 207
E + + G KK L + A + +
Sbjct: 218 REKVKGLYLPSCLGMKKLLKSNHIDAFNKANSV 250
>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase,
lyase, crotonase, biocatalysis, beta-diketone; 1.46A
{Anabaena SP} PDB: 2j5s_A* 2j5g_D
Length = 263
Score = 169 bits (430), Expect = 7e-52
Identities = 46/206 (22%), Positives = 84/206 (40%), Gaps = 15/206 (7%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
E + F +S + + RV+IL+ +G + A +D + + K
Sbjct: 55 EFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDVTNPRE-----------WDKTY 103
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFT-LKEVDIGLTAD 119
+K + +L PVISAV+GA + I DI A+++ F + ++ G+
Sbjct: 104 WEGKKVLQNLLDIEVPVISAVNGAALLHS-EYILTTDIILASENTVFQDMPHLNAGIVPG 162
Query: 120 VGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIA 179
G P +G FT K+ A +A E +V ++ L+ A E+ +A
Sbjct: 163 DGVHILWPLALG-LYRGRYFLFTQEKLTAQQAYELNVVHEVLPQ-SKLMERAWEIARTLA 220
Query: 180 SKSPVAVQGTKKTLVFSRDHAVEEGL 205
+ + ++ T+ L V EG+
Sbjct: 221 KQPTLNLRYTRVALTQRLKRLVNEGI 246
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics
center for infectious DI niaid; 1.75A {Mycobacterium
marinum}
Length = 278
Score = 168 bits (429), Expect = 2e-51
Identities = 59/205 (28%), Positives = 93/205 (45%), Gaps = 11/205 (5%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
+ E +D + + + R IL+ AG F AG+DL + ++
Sbjct: 51 IMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAATKKPPGDSFKDG---------SYD 101
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
+ ++ R KP+I+AV G I GG ++ DIR A + A F + E L
Sbjct: 102 PSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMG 161
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
G+ RL R I ++ ++ T R I AAEA+E GLV + D L A+E+ E+IA+
Sbjct: 162 GSAVRLVRQIP-YTVACDLLLTGRHITAAEAKEMGLVGHVVPD-GQALTKALEIAEIIAA 219
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
P+AVQ +T+ + E
Sbjct: 220 NGPLAVQAILRTIRETEGMHENEAF 244
>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for
infectious disease, S non-pathogenic mycobacterium
species, ortholog; 1.50A {Mycobacterium avium}
Length = 267
Score = 168 bits (428), Expect = 2e-51
Identities = 48/205 (23%), Positives = 83/205 (40%), Gaps = 12/205 (5%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
++ + S + RV++L+ G F AG DLS S G + + +++ + L+
Sbjct: 42 QLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSGGSPSSAYDMAVERAREMAALM 101
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
+ PVI+A+ G GG L+ A DI A + F L E IG+ +
Sbjct: 102 RA-------IVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAI 154
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
+L LP++ + T K +A A E GL++ +D L A +L +
Sbjct: 155 ISLTLLPKLSARAAA--RYYLTGEKFDARRAEEIGLITMAAED---LDAAIDQLVTDVGR 209
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
SP + +K + +
Sbjct: 210 GSPQGLAASKALTTAAVLERFDRDA 234
>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}
Length = 298
Score = 169 bits (429), Expect = 3e-51
Identities = 53/206 (25%), Positives = 86/206 (41%), Gaps = 7/206 (3%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
D + RVI+L+ G+ F AG L A + K+K
Sbjct: 61 GFYAAIDRAEADPGIRVIVLTGRGRGFCAGAYLGSA----DAAAGYDKTMAKAKDANLAD 116
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
++ + KPVI+A++G C+G G++ D+R+A A F GL A+
Sbjct: 117 LVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEF 176
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
G LPR+ ++ ++ + R A EA + GLV ++ E L+ A+E E IA
Sbjct: 177 GISWILPRLTS-WAVALDLLLSGRTFLAEEAAQLGLVKEVVTP-EQLMPRALEYAEDIAR 234
Query: 181 K-SPVAVQGTKKTLVFSRDHAVEEGL 205
SP ++ K+ + V E
Sbjct: 235 YCSPSSMAVIKRQVYGDATRDVVEAT 260
>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A
{Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A
Length = 257
Score = 167 bits (425), Expect = 3e-51
Identities = 47/206 (22%), Positives = 85/206 (41%), Gaps = 16/206 (7%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
E+ CF ++ + E +V+IL+ G F +D + ++I
Sbjct: 47 ELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLGTPHDW------------DEII 94
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWF-TLKEVDIGLTAD 119
Q+ +++L PVI+AV+G + +DI A + A F G+
Sbjct: 95 FEGQRLLNNLLSIEVPVIAAVNGPV-TNAPEIPVMSDIVLAAESATFQDGPHFPSGIVPG 153
Query: 120 VGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIA 179
GA P ++G + T ++++A A + G V+++ + + LL A EL IA
Sbjct: 154 DGAHVVWPHVLG-SNRGRYFLLTGQELDARTALDYGAVNEVLSE-QELLPRAWELARGIA 211
Query: 180 SKSPVAVQGTKKTLVFSRDHAVEEGL 205
K +A + +K L +E L
Sbjct: 212 EKPLLARRYARKVLTRQLRRVMEADL 237
>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.85A {Thermus thermophilus} SCOP:
c.14.1.3
Length = 253
Score = 166 bits (424), Expect = 5e-51
Identities = 53/205 (25%), Positives = 96/205 (46%), Gaps = 12/205 (5%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
+ + D L + R ++L+ GK F+AG DL+ + + + AE+ +
Sbjct: 30 SLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEEN---------YRHS 80
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
+ + + PKP ++AV+G + GG L A D+ ++A EV IG A +
Sbjct: 81 LSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAAL 140
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
+ L R +G + ++ T R +EA EA+ GLV+++ L A L E +A
Sbjct: 141 VS-VILVRAVG-EKAAKDLLLTGRLVEAREAKALGLVNRIAPP-GKALEEAKALAEEVAK 197
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
+P +++ TK+ L+ +E+G
Sbjct: 198 NAPTSLRLTKELLLALPGMGLEDGF 222
>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Mycobacterium abscessus}
Length = 265
Score = 166 bits (422), Expect = 1e-50
Identities = 60/205 (29%), Positives = 90/205 (43%), Gaps = 13/205 (6%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
+ +D + ++ R IL+ AG + G DLS + A D A
Sbjct: 40 QFAAAWDEIDHDDGIRAAILTGAGSAYCVGGDLSDGWMVRDGSAPPLDPAT--------- 90
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
K + KP+I+AV+GAC+GGG ++ DIR + + A F L EV GL
Sbjct: 91 --IGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPGA 148
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
G++ RL R I + E+ T + A EA GLV + + L A L + I
Sbjct: 149 GSMVRLKRQIP-YTKAMEMILTGEPLTAFEAYHFGLVGHVVPA-GTALDKARSLADRIVR 206
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
P+AV+ K+ +V S A E+
Sbjct: 207 NGPLAVRNAKEAIVRSGWLAEEDAR 231
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid
metabolism, STR genomics, structural genomics
consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Length = 280
Score = 166 bits (423), Expect = 1e-50
Identities = 38/207 (18%), Positives = 87/207 (42%), Gaps = 11/207 (5%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
EI + S+++ + +L+ G +++G DL+ + E++ +
Sbjct: 57 EIMRALKAASKDDS-IITVLTGNGDYYSSGNDLTNFTDIPPGGVEEK--------AKNNA 107
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
++ + PKP+I+ V+G +G ++L+ D YA+ A F +G + +
Sbjct: 108 VLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEG 167
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
+ P+I+ + E+ +K+ A EA GLV++++ D + + A
Sbjct: 168 CSSYTFPKIMS-PAKATEMLIFGKKLTAGEACAQGLVTEVFPD-STFQKEVWTRLKAFAK 225
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGLNQ 207
P A++ +K+ + + +
Sbjct: 226 LPPNALRISKEVIRKREREKLHAVNAE 252
>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 2.20A {Mycobacterium marinum}
Length = 265
Score = 165 bits (419), Expect = 4e-50
Identities = 59/205 (28%), Positives = 88/205 (42%), Gaps = 19/205 (9%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
+ + D L + V IL+ AG F AG+DL + E +
Sbjct: 46 ALADAMDRLDADAGLSVGILTGAGGSFCAGMDLKAFARGENVVVEGRGLGFT-------- 97
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
KP+I+AV G + GG L A D+ A +D+ F + EV GL A
Sbjct: 98 ---------ERPPAKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAGG 148
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
G L RLP I ++ E+A T + A A G+V+ L + + L AI L E I +
Sbjct: 149 GGLLRLPERIP-YAIAMELALTGDNLSAERAHALGMVNVLAEP-GAALDAAIALAEKITA 206
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
P+AV TK+ + SR +++
Sbjct: 207 NGPLAVAATKRIITESRGWSLDTRF 231
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase
superfamily, dimer of trimers, PSI-2, NYSGXRC,
structural genomics; 2.32A {Ruegeria pomeroyi}
Length = 263
Score = 164 bits (418), Expect = 5e-50
Identities = 47/205 (22%), Positives = 86/205 (41%), Gaps = 9/205 (4%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
+ + ++ V+++ G+IF AG DL + + E + L
Sbjct: 37 ALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEGRA------FVTDLF 90
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
+ L CPKP I+ V G G+ L+ A D+ YA+ A F L V G
Sbjct: 91 EACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGFCTT 150
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
A+ + R+IG + V E+A T +A A GL++++ + L +L +A+
Sbjct: 151 PAV-AVSRVIG-RRAVTEMALTGATYDADWALAAGLINRILPEAA-LATHVADLAGALAA 207
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
++ ++ +TL + +E+
Sbjct: 208 RNQAPLRRGLETLNRHLELPLEQAY 232
>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura
genomics, seattle structural genomics center for
infectious lyase; 1.75A {Mycobacterium marinum M}
Length = 233
Score = 162 bits (413), Expect = 1e-49
Identities = 43/206 (20%), Positives = 77/206 (37%), Gaps = 15/206 (7%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
+ E D+ + + ++++ ++F+ G DL + S + A ++
Sbjct: 35 ALNEAIDAA-DRDNVGALVIAGNHRVFSGGFDLKVLTSGEAKPA------------IDML 81
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
+ L PKPV+ A G I G L+ + D R A EV IG+T
Sbjct: 82 RGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIGMTIPY 141
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
A++ L + S + A A+ A G + ++ E +L+ A E A
Sbjct: 142 AAMEVLKLRLT-PSAYQQAAGLAKTFFGETALAAGFIDEISLP-EVVLSRAEEAAREFAG 199
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGLN 206
+ A TK A+ G++
Sbjct: 200 LNQQAHNATKLRARAEALKAIRAGID 225
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics;
1.58A {Legionella pneumophila subsp}
Length = 268
Score = 163 bits (416), Expect = 1e-49
Identities = 61/207 (29%), Positives = 98/207 (47%), Gaps = 12/207 (5%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
E+ DS + RVI+L A GK F+AG DL+ M S+ +E+ S +L L+
Sbjct: 35 EMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMAN--FTEEENLEDSLVLGNLM 92
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
+ + + PKP I+ V GA GGG L A DI A+ A F EV +GL V
Sbjct: 93 YS-------ISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAV 145
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
+ + R IG + + +A +A A LV D ++LL ++ I++
Sbjct: 146 IS-PYVVRAIG-ERAAKMLFMSAEVFDATRAYSLNLVQHCVPD-DTLLEFTLKYASQISN 202
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGLNQ 207
+P AV+ +K+ + + ++E L +
Sbjct: 203 NAPEAVKNSKQLAQYVANKKIDEELVR 229
>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, otholog; 2.15A {Mycobacterium avium subsp}
Length = 274
Score = 163 bits (415), Expect = 2e-49
Identities = 52/207 (25%), Positives = 101/207 (48%), Gaps = 10/207 (4%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
E+ + ++ +++++ G+ F +G D+ + G+ I E+ ++
Sbjct: 42 ELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIPEDGKVIYERPYLST-----YDQW 96
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
Q+ KPV++AV+G C G GM +T DI A++ A F V IGL A
Sbjct: 97 EAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVAG- 155
Query: 121 GALQRLPRIIGNQSLVNEIAFTARK--IEAAEARECGLVSKLYDDKESLLAGAIELGELI 178
L R+ R++ +S+ +A + + A A E GL+S++ + + LL A E+ +++
Sbjct: 156 RELVRVSRVLP-RSIALRMALMGKHERMSAQRAYELGLISEIVEH-DRLLERAHEIADIV 213
Query: 179 ASKSPVAVQGTKKTLVFSRDHAVEEGL 205
S +P+AV+GT+ ++ + + E
Sbjct: 214 NSNAPLAVRGTRLAILKGLNVPLHEAE 240
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural
genomics, PSI-2, protein structure initiative; HET: MSE;
2.40A {Pseudomonas aeruginosa}
Length = 258
Score = 162 bits (413), Expect = 2e-49
Identities = 54/205 (26%), Positives = 84/205 (40%), Gaps = 13/205 (6%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
++ +EE R +L A G+ FTAGLDL + A ++
Sbjct: 43 DLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMELAPK--LAASGFRYPDGGVDPWGVV 100
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
R KP++ AV G C G+ L+ ADI A + F EV G+
Sbjct: 101 QP---------RRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIPPLG 151
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
G+ R PR G + T + +A EA L++++ + LA A+E E IA
Sbjct: 152 GSTVRFPRAAG-WTDAMRYILTGDEFDADEALRMRLLTEVVEP-GEELARALEYAERIAR 209
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
+P+AV+ ++ RD + L
Sbjct: 210 AAPLAVRAALQSAFQGRDEGDDAAL 234
>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus}
Length = 265
Score = 162 bits (413), Expect = 3e-49
Identities = 51/208 (24%), Positives = 86/208 (41%), Gaps = 18/208 (8%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
++G + L ++ RVI+L+ A F +G +S A R
Sbjct: 38 QLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAA-------------AETFAAPRNPD 84
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
+ + PVI+AV+G IG GM+L ADIR ++ + + +V G+ D
Sbjct: 85 FSASPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDA 144
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
A LPR++G ++ E+ T A A E GL ++ +L A+ + IA+
Sbjct: 145 LAHWTLPRLVG-TAVAAELLLTGASFSAQRAVETGLANRCLPA-GKVLGAALRMAHDIAT 202
Query: 181 K-SPVAVQGTKKTLV--FSRDHAVEEGL 205
+P + TK+ L + E
Sbjct: 203 NVAPESAALTKRLLWDAQMTGMSAAEVA 230
>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 2.09A {Mycobacterium abscessus}
Length = 256
Score = 160 bits (408), Expect = 1e-48
Identities = 60/205 (29%), Positives = 91/205 (44%), Gaps = 20/205 (9%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
+ D L + + V I++ AG F AG+DL +S ++E+
Sbjct: 38 GLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFVSGEAVLSERGLGFTN-------- 89
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
KP+I+AV G + GG L+ + D+ A + A F + EV GL A
Sbjct: 90 ----------VPPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGA 139
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
G L RLP I + E+A T A +A + G +++L DD L A+EL I +
Sbjct: 140 GGLLRLPNRIP-YQVAMELALTGESFTAEDAAKYGFINRLVDD-GQALDTALELAAKITA 197
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
P+AV TK+ ++ S A EE
Sbjct: 198 NGPLAVAATKRIIIESASWAPEEAF 222
>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase,
crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens}
PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E*
2vsu_F* 2vsu_E* 2vsu_C*
Length = 276
Score = 161 bits (409), Expect = 1e-48
Identities = 49/211 (23%), Positives = 89/211 (42%), Gaps = 9/211 (4%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
E+ + ++L ++ V++L+ AG+ +TAG+DL + + KI R+
Sbjct: 40 EMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEY----FREVDAGPEILQEKIRREAS 95
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
K + KP I+ V+G C GGG S + A D+ +A F L E++ G+
Sbjct: 96 QWQWKLL---RMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGN 152
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
+ + +G T + +A E GLV++ L IEL +
Sbjct: 153 LVSKAMADTVG-HRQSLMYIMTGKTFGGQKAAEMGLVNESVPL-AQLREVTIELARNLLE 210
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGLNQVDKE 211
K+PV ++ K R+ E+ + + +
Sbjct: 211 KNPVVLRAAKHGFKRCRELTWEQNEDYLYAK 241
>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2,
protein structure initiative, EN hydratase; 1.76A
{Bordetella parapertussis}
Length = 254
Score = 160 bits (406), Expect = 3e-48
Identities = 45/205 (21%), Positives = 76/205 (37%), Gaps = 18/205 (8%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
+ + D+ E+ +++ + AG+ F+AG D + + +E + + R +I
Sbjct: 38 ALIDGVDAA-HREQVPLLVFAGAGRNFSAGFDFTDY----ETQSEGDLLLRMVRI----- 87
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
+ + + P ++ HG G G+ L A RY T +A F + + GL V
Sbjct: 88 ---EMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGL---V 141
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
+R I+G I +AR +A EAR G V A E +
Sbjct: 142 LGTRRFRDIVG-ADQALSILGSARAFDADEARRIGFVRDCAAQ-AQWPALIDAAAEAATA 199
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
P + L D A L
Sbjct: 200 LDPATRATLHRVLRDDHDDADLAAL 224
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu
genomics, seattle structural genomics center for
infectious lyase; 1.75A {Mycobacterium smegmatis} PDB:
3njb_A
Length = 333
Score = 161 bits (409), Expect = 5e-48
Identities = 46/223 (20%), Positives = 76/223 (34%), Gaps = 23/223 (10%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLG------------------QE 42
E+ + + + VI++S G+ F AG DLS Q
Sbjct: 66 ELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAEGSSSAGGGSPYEGTVLSGKTQA 125
Query: 43 IAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYAT 102
+ D + ++++ + + +SL C KP + +HG C+ GG + AD A
Sbjct: 126 LNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAA 185
Query: 103 KDAWFTLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYD 162
DA + + G +G + FT I A+A E GL + D
Sbjct: 186 ADAKIGYPPMRVWGVPAAG---LWAHRLG-DQRAKRLLFTGDCITGAQAAEWGLAVEAPD 241
Query: 163 DKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGL 205
L A L E IA+ + K + +
Sbjct: 242 P-ADLDARTERLVERIAAMPVNQLIMAKLACNTALLNQGVATS 283
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics,
seattle structur genomics center for infectious disease,
ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB:
3p85_A* 3qyr_A
Length = 256
Score = 158 bits (403), Expect = 8e-48
Identities = 48/205 (23%), Positives = 81/205 (39%), Gaps = 23/205 (11%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
+++ V+I++ A +F AGLDL + + E D++ K
Sbjct: 40 TFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKEL----GDTTELPDISPK-------- 87
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
KPVI A++GA + GG+ L DI A+++A F +GL
Sbjct: 88 ---------WPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLMPTW 138
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
G RLP+ +G L ++ T + A +A GLV+++ + LL A + I
Sbjct: 139 GLSVRLPQKVG-VGLARRMSLTGDYLSAQDALRAGLVTEVVAH-DDLLTAARRVAASIVG 196
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
+ AV+ + L
Sbjct: 197 NNQKAVRALLDSYHRIDALQTGGAL 221
>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism,
lyase, structural genomics; HET: PGE; 2.30A
{Mycobacterium tuberculosis}
Length = 264
Score = 158 bits (401), Expect = 2e-47
Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 26/205 (12%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
E+ + + R I+L+ G F AG DLSG A D +
Sbjct: 52 ELTQAIRKA-GDGSARAIVLTGQGTAFCAGADLSGD-------AFAADYPDR-------- 95
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
+ +++ P PV+ A++G IG G+ L D+R DA+F GL D
Sbjct: 96 --LIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDN 153
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
+++RL ++G + +A K+ A A G+ +++ + A IA
Sbjct: 154 WSIRRLSSLVG-HGRARAMLLSAEKLTAEIALHTGMANRIGTLAD-----AQAWAAEIAR 207
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
+P+A+Q K+ L + D A+EE
Sbjct: 208 LAPLAIQHAKRVL--NDDGAIEEAW 230
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: FLC PG4; 1.82A {Bacillus anthracis}
Length = 261
Score = 158 bits (401), Expect = 2e-47
Identities = 59/205 (28%), Positives = 108/205 (52%), Gaps = 13/205 (6%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
++ E D + +++ RV+++ G+ F+AG D+ S+ ++K +L
Sbjct: 36 DVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSVT-----------EAKQATELA 84
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
Q + +E+C KPVI+A+HGA +GGG+ + +R+AT+ A L E+ +GL
Sbjct: 85 QLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGF 144
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
QRLPR +G ++ E+ T+ I AEA + GLV+ ++ + E+ L +++ + IA
Sbjct: 145 AGTQRLPRYVG-KAKACEMMLTSTPITGAEALKWGLVNGVFAE-ETFLDDTLKVAKQIAG 202
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
KSP + + L ++ EG+
Sbjct: 203 KSPATARAVLELLQTTKSSHYYEGV 227
>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious
DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium
avium subsp} PDB: 3r9s_A 3r0o_A
Length = 267
Score = 158 bits (401), Expect = 2e-47
Identities = 56/212 (26%), Positives = 99/212 (46%), Gaps = 21/212 (9%)
Query: 1 EIGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 59
+G+ + + E R ++L+ AG K F AG DL + AR+ +
Sbjct: 40 GVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAI-------------ARRENLYHPD 86
Query: 60 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTAD 119
+ + KP I+AV+G +GGG L A+D+ A + A F L EV GL A
Sbjct: 87 HPEWGFAGYVRHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAA 146
Query: 120 VGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIA 179
G + R+ + + + + T + AA AR+ GL++++ + S+L A+ L I
Sbjct: 147 AGGVFRIAEQLP-RKVAMRLLLTGEPLSAAAARDWGLINEVVEA-GSVLDAALALASAIT 204
Query: 180 SKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKE 211
+P++VQ +K+ + V++G+ D+
Sbjct: 205 VNAPLSVQASKRIA-----YGVDDGVVVGDEP 231
>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A
{Mycobacterium abscessus} PDB: 3qka_A
Length = 262
Score = 155 bits (393), Expect = 3e-46
Identities = 50/205 (24%), Positives = 76/205 (37%), Gaps = 16/205 (7%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
+ F + E V +L F AG DL M +
Sbjct: 42 ALLAAFTEFDADPEASVAVLWGDNGTFCAGADLKAMGTDRGNELHPHG------------ 89
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
S R KPVI+A+ G + GG+ L D+R +DA + G+
Sbjct: 90 --PGPMGPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLID 147
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
G RLPR+IG S ++ T R + A EA + GLV+++ + A L IA+
Sbjct: 148 GGTIRLPRLIG-HSRAMDLILTGRPVHANEALDIGLVNRVVARGQ-AREAAETLAAEIAA 205
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
V+ + + + A E L
Sbjct: 206 FPQQCVRADRDSAIAQWGMAEEAAL 230
>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics,
protein structure INI NEW YORK structural genomix
research consortium; 2.00A {Rhodopseudomonas palustris}
Length = 275
Score = 155 bits (393), Expect = 3e-46
Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 16/205 (7%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
+ +C + ++ R +++ G F+AGLDLS +
Sbjct: 47 ALKDCLTDI--PDQIRAVVIHGIGDHFSAGLDLSELRERDATEG------------LVHS 92
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
T+ + ++ C PVI+A+ GA IGGG+ L AA IR A A++ L E G+
Sbjct: 93 QTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGG 152
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
G RLPR+IG + + ++ T R AAE G L ++ S A+ELG +A
Sbjct: 153 GGSVRLPRLIG-VARMADMMLTGRVYSAAEGVVHGFSQYLIEN-GSAYDKALELGNRVAQ 210
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
+P+ + L + + GL
Sbjct: 211 NAPLTNFAVLQALPMIAEANPQTGL 235
>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A
Length = 258
Score = 154 bits (391), Expect = 5e-46
Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
EI ++ NE+ RVI+L+ G+ F AG D+ M E +
Sbjct: 36 EIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAKDDPIRLEWLN------------ 83
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
L P+I+AV+G +GGG L + D+ A+ A F EV++G+
Sbjct: 84 --QFADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGA 141
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
G QRL ++IG E +T ++ A EA + G+V+++ E L+ + L +A
Sbjct: 142 GGTQRLTKLIG-PKRALEWLWTGARMSAKEAEQLGIVNRVVSP-ELLMEETMRLAGRLAE 199
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
+ P+A++ K+ + + D+ + EG+
Sbjct: 200 QPPLALRLIKEAVQKAVDYPLYEGM 224
>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein;
2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB:
2a81_A*
Length = 250
Score = 153 bits (390), Expect = 6e-46
Identities = 45/206 (21%), Positives = 84/206 (40%), Gaps = 15/206 (7%)
Query: 1 EIGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 59
+ + + ++ R +++ + F+AG D + + L +S+ + +
Sbjct: 31 SVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLS-----------RSEDIEEW 79
Query: 60 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTAD 119
I ++ KP I+AV G IG G D R A F + E+ G+
Sbjct: 80 IDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCS 139
Query: 120 VGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIA 179
VGA L G S + EI + + ++A + LV+++ + +LL AI ++A
Sbjct: 140 VGA-AILGFTHG-FSTMQEIIYQCQSLDAPRCVDYRLVNQVVES-SALLDAAITQAHVMA 196
Query: 180 SKSPVAVQGTKKTLVFSRDHAVEEGL 205
S A TK+ + H +E+
Sbjct: 197 SYPASAFINTKRAVNKPFIHLLEQTR 222
>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle
ST genomics center for infectious disease, lyase; 1.80A
{Mycobacterium thermoresistibile} PDB: 3ome_A
Length = 279
Score = 154 bits (391), Expect = 9e-46
Identities = 51/191 (26%), Positives = 81/191 (42%), Gaps = 11/191 (5%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
E+ + +E+ + VI+L A GK F+AG DL G + ++ + +
Sbjct: 51 ELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRGG----GPVPDKLTLEFIYAHESRRY 106
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
Y PKP I+AV G CI GG+ L D+ A +DA F+ V + +
Sbjct: 107 LEYSLRW---RNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDIGG-- 161
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
+G EI FT R + A E + G+V+++ + L A L IA
Sbjct: 162 VEYHGHTWELG-PRKAKEILFTGRAMTAEEVAQTGMVNRVVPR-DRLDAETRALAGEIAK 219
Query: 181 KSPVAVQGTKK 191
P A++ K+
Sbjct: 220 MPPFALRQAKR 230
>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural
genomic for structural genomics of infectious diseases,
csgid; HET: MSE; 1.80A {Bacillus anthracis}
Length = 265
Score = 153 bits (389), Expect = 1e-45
Identities = 67/206 (32%), Positives = 101/206 (49%), Gaps = 15/206 (7%)
Query: 1 EIGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 59
E+ ++E RV+IL+ AG K F AG DL + +E R
Sbjct: 40 ELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMNEEQV------------RHA 87
Query: 60 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTAD 119
++ + ++ +E+ P+PVI+A++G +GGG L A D R A + A L E + +
Sbjct: 88 VSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPG 147
Query: 120 VGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIA 179
G QRLPR+IG E+ +T R+I A EA+E GLV + L AIE+ E IA
Sbjct: 148 AGGTQRLPRLIG-VGRAKELIYTGRRISAQEAKEYGLVEFVVPV-HLLEEKAIEIAEKIA 205
Query: 180 SKSPVAVQGTKKTLVFSRDHAVEEGL 205
S P+AV+ K+ + + GL
Sbjct: 206 SNGPIAVRLAKEAISNGIQVDLHTGL 231
>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics,
PSI-2, protein structure initiative; 2.50A {Pseudomonas
syringae PV}
Length = 232
Score = 152 bits (386), Expect = 1e-45
Identities = 36/206 (17%), Positives = 68/206 (33%), Gaps = 18/206 (8%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
D ++ ++I++ I + G DL M ++ L+
Sbjct: 36 AFNAALDQAEKDR--AIVIVTGQPGILSGGYDLKVM-------------TSSAEAAINLV 80
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKD-AWFTLKEVDIGLTAD 119
+ P P+I A G + G L+ +AD R L EV IG+T
Sbjct: 81 AQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMH 140
Query: 120 VGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIA 179
++ + +S N A + A G + K+ E L A+ + +
Sbjct: 141 HAGIELARDRLR-KSAFNRSVINAEMFDPEGAMAAGFLDKVVSV-EELQGAALAVAAQLK 198
Query: 180 SKSPVAVQGTKKTLVFSRDHAVEEGL 205
+ A + TK + ++ +
Sbjct: 199 KINMNAHKKTKLKVRKGLLDTLDAAI 224
>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis, ortholog; 2.25A {Mycobacterium marinum}
Length = 277
Score = 153 bits (389), Expect = 2e-45
Identities = 49/205 (23%), Positives = 84/205 (40%), Gaps = 14/205 (6%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
EI D L ++ ++L +IF+AG D+ + +L A
Sbjct: 54 EIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELRTLNAPEA------------DTAA 101
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
++I ++ PKP ++AV G +G G++L AAD R + + F E+ GL
Sbjct: 102 RVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGG 161
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
G + RL R++G S E+ F+ R +A EA GL+ + + + A+
Sbjct: 162 GGMGRLTRVVG-SSRAKELVFSGRFFDAEEALALGLIDDMVAP-DDVYDSAVAWARRYLE 219
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
P A+ K + + E
Sbjct: 220 CPPRALAAAKAVINDVFELEATERA 244
>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH;
polyketide synthase, enoyl COA hydratase,isomerase;
2.32A {Bacillus subtilis}
Length = 267
Score = 152 bits (386), Expect = 3e-45
Identities = 45/205 (21%), Positives = 74/205 (36%), Gaps = 17/205 (8%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
E + + E V++L ++F G D + + +Q L L
Sbjct: 38 ECLQVLNQC-ETSTVTVVVLEGLPEVFCFGADFQEIYQEMKRGRKQASSQEP---LYDLW 93
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
L+ P IS V G GG+ ++A DI A + A F+L E+ GL
Sbjct: 94 MK-------LQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYPAC 146
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
L R IG + + + + I EA E GL+ + + LL + +
Sbjct: 147 VL-PFLIRRIG-RQKAHYMTLMTKPISVQEASEWGLIDAFDAESDVLLR---KHLLRLRR 201
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
+ + K+ + S DH V
Sbjct: 202 LNKKGIAHYKQ-FMSSLDHQVSRAK 225
>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS,
fatty acid metaboli metabolism, lyase, structural
genomics; 1.80A {Mycobacterium tuberculosis} PDB:
3q0j_A* 3pzk_A 3q0g_A*
Length = 278
Score = 152 bits (387), Expect = 4e-45
Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 16/205 (7%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
E+ L ++ + II++ + K F AG D+ M L A D
Sbjct: 56 EVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFADAFTAD------------ 103
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
+ + L P I+AV G +GGG L D+ A A F E+ +G+ +
Sbjct: 104 --FFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGM 161
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
G QRL R IG ++ ++ T R ++AAEA GLVS++ + LL A I+
Sbjct: 162 GGSQRLTRAIG-KAKAMDLILTGRTMDAAEAERSGLVSRVVPA-DDLLTEARATATTISQ 219
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
S A + K+ + + + ++ EGL
Sbjct: 220 MSASAARMAKEAVNRAFESSLSEGL 244
>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics
center for infectious DI enoyl COA, actinobacteria,
lyase; 1.50A {Mycobacterium smegmatis}
Length = 263
Score = 151 bits (385), Expect = 4e-45
Identities = 51/205 (24%), Positives = 92/205 (44%), Gaps = 16/205 (7%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
E+ + + E I+++ + + F AG D++ M++L A + +
Sbjct: 41 EVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVTLTPHQARERN------------ 88
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
SL + KP+++AV G +GGG L D+ A A F E+ +G+ +
Sbjct: 89 --LLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILPGL 146
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
G QRL R +G ++ ++ T R + A EA GLVS++ LL A+ + + IA
Sbjct: 147 GGTQRLTRAVG-KAKAMDLCLTGRSLTAEEAERVGLVSRIVPA-ADLLDEALAVAQRIAR 204
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
S A + K + + + + G+
Sbjct: 205 MSRPAGRAVKDAINEAFERPLSAGM 229
>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC;
2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A*
1dub_A* 1ey3_A* 2hw5_A*
Length = 260
Score = 150 bits (382), Expect = 1e-44
Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 16/205 (7%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
E+ + ++ E+ I+L+ K F AG D+ M + +
Sbjct: 38 ELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGK------------ 85
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
+ + R KPVI+AV+G +GGG L DI YA + A F E+ +G
Sbjct: 86 --FLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGA 143
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
G QRL R +G +SL E+ T +I A +A++ GLVSK++ E+L+ AI+ E IA+
Sbjct: 144 GGTQRLTRAVG-KSLAMEMVLTGDRISAQDAKQAGLVSKIFPV-ETLVEEAIQCAEKIAN 201
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
S + V K+++ + + + EG
Sbjct: 202 NSKIIVAMAKESVNAAFEMTLTEGN 226
>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET:
CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A
Length = 260
Score = 150 bits (382), Expect = 1e-44
Identities = 41/208 (19%), Positives = 74/208 (35%), Gaps = 17/208 (8%)
Query: 1 EIGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 59
E+ + L ++ R +IL++ +F+AGLDL+ M
Sbjct: 35 ELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHY------------AGY 82
Query: 60 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFT--LKEVDIGLT 117
Q+ L + ++SA++GAC GG + D R + + L E +G+
Sbjct: 83 WKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGII 142
Query: 118 ADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGEL 177
A L IG AEA + G+V ++ + E + + A+
Sbjct: 143 APFWLKDTLENTIG-HRAAERALQLGLLFPPAEALQVGIVDQVVPE-EQVQSTALSAIAQ 200
Query: 178 IASKSPVAVQGTKKTLVFSRDHAVEEGL 205
+ A Q TK + + +
Sbjct: 201 WMAIPDHARQLTKAMMRKATASRLVTQR 228
>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding
protein,enoyl-COA hydratase, riken structural
genomics/proteomics initiative, RSGI; 2.20A {Homo
sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A
Length = 272
Score = 150 bits (382), Expect = 1e-44
Identities = 56/209 (26%), Positives = 94/209 (44%), Gaps = 17/209 (8%)
Query: 1 EIGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 59
+ + D+L +++ R II+ + IF AG DL +
Sbjct: 43 MLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEV------------GPF 90
Query: 60 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTAD 119
++ + I+ + P P I+A+ G +GGG+ L A DIR A A L E + +
Sbjct: 91 VSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPG 150
Query: 120 VGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKE---SLLAGAIELGE 176
G QRLPR IG SL E+ F+AR ++ EA+ GL+S + + + + A++L
Sbjct: 151 GGGTQRLPRAIG-MSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAR 209
Query: 177 LIASKSPVAVQGTKKTLVFSRDHAVEEGL 205
+ PVA++ K + + + GL
Sbjct: 210 EFLPQGPVAMRVAKLAINQGMEVDLVTGL 238
>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural
genomics center for infectious lyase; 1.55A
{Mycobacterium smegmatis}
Length = 286
Score = 150 bits (382), Expect = 2e-44
Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 14/205 (6%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
+GE F +L+E+E R ++L+A+GK F AG DL M + ++ AR + ++ +
Sbjct: 57 ALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEMRAEPSREYYEKLFARCTDVMLAI- 115
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
+R P PVI+ VHG G L+ D+ AT+DA F + +++GL
Sbjct: 116 ----------QRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLFCST 165
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
+ L R +G + E+ T + A +A+ GLV+++ ++L + I +
Sbjct: 166 PGVA-LSRNVG-RKAAFEMLVTGEFVSADDAKGLGLVNRVVAP-KALDDEIEAMVSKIVA 222
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
K AV K + +E
Sbjct: 223 KPRAAVAMGKALFYRQIETDIESAY 247
>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily,
lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A
1rjm_A* 1rjn_A* 1q52_A 1q51_A
Length = 334
Score = 151 bits (384), Expect = 3e-44
Identities = 50/215 (23%), Positives = 83/215 (38%), Gaps = 16/215 (7%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKI-------FTAGLDLSGMLSLGQEIAEQEDVARKS 53
E+ D + + V++L+ G F +G D G + A + A
Sbjct: 88 ELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDT-ADTV 146
Query: 54 KILRKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKD-AWFTLKEV 112
+ R + + PK VI V+G GGG SL D+ A+++ A F +
Sbjct: 147 DVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDA 206
Query: 113 DIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAI 172
D+G L R +G Q EI F R A + + G V+ + + E L +
Sbjct: 207 DVGSFDGGYGSAYLARQVG-QKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAE-LETVGL 264
Query: 173 ELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQ 207
+ I +KSP A + K + +++GL
Sbjct: 265 QWAAEINAKSPQAQRMLKFAF-----NLLDDGLVG 294
>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli}
SCOP: c.14.1.3 PDB: 1ef9_A*
Length = 261
Score = 149 bits (378), Expect = 4e-44
Identities = 49/207 (23%), Positives = 96/207 (46%), Gaps = 18/207 (8%)
Query: 1 EIGECFDSLSENEECRVIIL--SAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRK 58
++ + L E R IIL + K+F+AG D+ + S G++ +D
Sbjct: 35 DLMQALSDL-NRPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDD---------- 83
Query: 59 LITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTA 118
++ +++ PKP+IS V G+ GG +I ++D+ A + F++ V++G+
Sbjct: 84 ---PLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPY 140
Query: 119 DVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELI 178
++ + L R G +V E+ FTA I A A G+++ + + E L +++ I
Sbjct: 141 NLVGIHNLTRDAG-FHIVKELIFTASPITAQRALAVGILNHVVEV-EELEDFTLQMAHHI 198
Query: 179 ASKSPVAVQGTKKTLVFSRDHAVEEGL 205
+ K+P+A+ K+ L +
Sbjct: 199 SEKAPLAIAVIKEELRVLGEAHTMNSD 225
>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase,
structural genomics, NPPSFA; 2.16A {Geobacillus
kaustophilus}
Length = 265
Score = 149 bits (378), Expect = 6e-44
Identities = 47/207 (22%), Positives = 90/207 (43%), Gaps = 16/207 (7%)
Query: 1 EIGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 59
E D + + + +V+I+ + K F+AG D++ + S +
Sbjct: 39 EFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRSADPRFK------------TQF 86
Query: 60 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAW-FTLKEVDIGLTA 118
+++ + R P+ I+ + G +GGG+ + A D+R+ +A L EV +G+ A
Sbjct: 87 CLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLA 146
Query: 119 DVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELI 178
G QRL R+IG S ++ T I EA E GLV++++ E +
Sbjct: 147 GTGGTQRLARLIG-YSRALDMNITGETITPQEALEIGLVNRVFPQ-AETRERTREYARKL 204
Query: 179 ASKSPVAVQGTKKTLVFSRDHAVEEGL 205
A+ + AV K ++ ++ + +
Sbjct: 205 ANSATYAVSNIKLAIMNGKEMPLNVAI 231
>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase,
PSI-2, protein structure initiative; 1.50A {Streptomyces
avermitilis}
Length = 289
Score = 148 bits (377), Expect = 1e-43
Identities = 40/207 (19%), Positives = 76/207 (36%), Gaps = 14/207 (6%)
Query: 1 EIGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 59
++ + L+ RV+I +A F +D++ + E A+
Sbjct: 38 DLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAAKAGG---------PG 88
Query: 60 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKD-AWFTLKEVDIGLTA 118
+ L + P I+ + G G G + A D+R+A+++ A EV IG
Sbjct: 89 DASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPP 148
Query: 119 DVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELI 178
GA+Q L R++G + E T+ +A A G V++ D L + +
Sbjct: 149 GAGAIQHLTRLLG-RGRALEAVLTSSDFDADLAERYGWVNRAVPD-AELDEFVAGIAARM 206
Query: 179 ASKSPVAVQGTKKTLVFSRDHAVEEGL 205
+ A+ K + + +
Sbjct: 207 SGFPRDALIAAKS-AINAISLPAPAEV 232
>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown
function, PSI-2, protein struct initiative; 1.80A
{Streptomyces avermitilis}
Length = 287
Score = 148 bits (375), Expect = 2e-43
Identities = 38/193 (19%), Positives = 77/193 (39%), Gaps = 11/193 (5%)
Query: 1 EIGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 59
E+ +L+++ RVI+ S+A + F A +D+ + + + +
Sbjct: 39 ELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMR-------IGEKMDALQELAASAPAD 91
Query: 60 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKD-AWFTLKEVDIGLTA 118
+ +Q + P+ I + G GGG + AAD+ +A + A E +G+
Sbjct: 92 VNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIP 151
Query: 119 DVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELI 178
G Q L +G ++ E+ TA +A A G +++ + L + I
Sbjct: 152 GGGGTQYLRGRVG-RNRALEVVLTADLFDAETAASYGWINRALPA-DELDEYVDRVARNI 209
Query: 179 ASKSPVAVQGTKK 191
A+ ++ K+
Sbjct: 210 AALPDGVIEAAKR 222
>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A
{Streptomyces toyocaensis} PDB: 2pg8_A*
Length = 440
Score = 146 bits (369), Expect = 3e-41
Identities = 44/224 (19%), Positives = 80/224 (35%), Gaps = 24/224 (10%)
Query: 1 EIGECFDSLSENEECRVIILSAA---------GKIFTAGLDLSGM----LSLGQEIAEQE 47
++ D + RV +L ++F+AG++L + +SL + +E
Sbjct: 198 DMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQGGISLVDFLMRRE 257
Query: 48 DVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWF 107
+ L + R KP ++AV G IGGG L+ D A+ DA+F
Sbjct: 258 LGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYF 317
Query: 108 TLKEVDIGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESL 167
+L G+ RL R G + ++ R+I A E LV ++ + + L
Sbjct: 318 SLPAAKEGIIPGAAN-LRLGRFAG-PRVSRQVILEGRRIWAKEPEARLLVDEVVEP-DEL 374
Query: 168 LAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKE 211
A + + +A + +E +
Sbjct: 375 DAAIERSLTRLDGDAVLANRRMLN--------LADESPDGFRAY 410
>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA;
2.9A {Staphylococcus aureus}
Length = 273
Score = 141 bits (359), Expect = 4e-41
Identities = 49/192 (25%), Positives = 79/192 (41%), Gaps = 14/192 (7%)
Query: 1 EIGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 59
E+ + F +++ VI+L+ G F +G D G +Q I R
Sbjct: 44 EMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVGEDQ--------IPRLN 95
Query: 60 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTAD 119
+ Q+ I PKPVI+ V G +GGG L D+ A +A F +G
Sbjct: 96 VLDLQRLI---RIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDA 152
Query: 120 VGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIA 179
L RI+G EI + R+ A EA + GLV+ + ++ + ++ + I
Sbjct: 153 GYGSGYLARIVG-HKKAREIWYLCRQYNAQEALDMGLVNTVVPLEK-VEDETVQWCKEIM 210
Query: 180 SKSPVAVQGTKK 191
SP A++ K
Sbjct: 211 KHSPTALRFLKA 222
>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily,
lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A
2iex_A
Length = 289
Score = 141 bits (358), Expect = 8e-41
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 15/208 (7%)
Query: 1 EIGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 59
E+ + ++ VIIL+ AG K F +G D G + +
Sbjct: 59 EMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSG-------VHHLN 111
Query: 60 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTAD 119
+ +Q+ I CPKPV++ V G IGGG L D+ A +A F +G
Sbjct: 112 VLDFQRQI---RTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDG 168
Query: 120 VGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIA 179
+ RI+G Q EI F R+ +A +A + GLV+ + + L + +
Sbjct: 169 GWGASYMARIVG-QKKAREIWFLCRQYDAKQALDMGLVNTVVPLAD-LEKETVRWCREML 226
Query: 180 SKSPVAVQGTKKTLVFSRDHAVEEGLNQ 207
SP+A++ K + D + GL +
Sbjct: 227 QNSPMALRCLKA--ALNADCDGQAGLQE 252
>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty
acid metabolism, transit peptide, lipid Met crontonase,
mitochondrion, CAsp; 2.3A {Homo sapiens}
Length = 287
Score = 140 bits (356), Expect = 2e-40
Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 14/205 (6%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
+ +++ + +VII+SA G +F++G DL + E SK++ +
Sbjct: 64 SLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGRDYHAEVFQTCSKVMMHI- 122
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
P PVI+ V+G G L+ + DI A+ + F V++GL
Sbjct: 123 ----------RNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCST 172
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
+ L R + + E+ FT I A EA GL+SK+ + L + + IAS
Sbjct: 173 PGVA-LARAVPR-KVALEMLFTGEPISAQEALLHGLLSKVVPE-AELQEETMRIARKIAS 229
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
S V K T +
Sbjct: 230 LSRPVVSLGKATFYKQLPQDLGTAY 254
>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase;
2.04A {Synechocystis SP}
Length = 275
Score = 134 bits (340), Expect = 2e-38
Identities = 55/213 (25%), Positives = 84/213 (39%), Gaps = 21/213 (9%)
Query: 1 EIGECFDSLSENEECRVIILSAAG------KIFTAGLDLSGMLSLGQEIAEQEDVARKSK 54
E+ + F + E+ V++L+ AG F +G D S G +
Sbjct: 41 ELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGGYIDDQGTPRLNVLD 100
Query: 55 ILRKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDI 114
+ R + PK VI+ V G IGGG L D+ A +A F +
Sbjct: 101 LQRLI-----------RSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKV 149
Query: 115 GLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIEL 174
G L RI+G Q EI + R+ A EA G+V+ + L I+
Sbjct: 150 GSFDGGFGSSYLARIVG-QKKAREIWYLCRQYSAQEAERMGMVNTVVPVDR-LEEEGIQW 207
Query: 175 GELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQ 207
+ I SKSP+A++ K F+ D + GL +
Sbjct: 208 AKEILSKSPLAIRCLKAA--FNADCDGQAGLQE 238
>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas
campestris PV} PDB: 3m6m_A
Length = 305
Score = 132 bits (333), Expect = 6e-37
Identities = 35/210 (16%), Positives = 72/210 (34%), Gaps = 13/210 (6%)
Query: 1 EIGECFDSLSENEEC-----RVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKI 55
+I +L + ++L++ +F G DL+ L +E + +
Sbjct: 67 DITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFCQLIREGDRARLLDYAQRC 126
Query: 56 LRKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 115
+R + I+ V G +GGG + A + L EV
Sbjct: 127 VRG-----VHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFD 181
Query: 116 LTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELG 175
L +GA + + I L +I A + GLV ++ + +A ++
Sbjct: 182 LFPGMGAYSFMCQRIS-AHLAQKIMLEGNLYSAEQLLGMGLVDRVVPRGQ-GVAAVEQVI 239
Query: 176 ELIASKSPVAVQGTKKTLVFSRDHAVEEGL 205
+ ++P A ++ + +EE +
Sbjct: 240 R-ESKRTPHAWAAMQQVREMTTAVPLEEMM 268
>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving,
burkholderia xenovorans LB400 crotonase; 1.50A
{Burkholderia xenovorans}
Length = 556
Score = 123 bits (309), Expect = 4e-32
Identities = 40/212 (18%), Positives = 70/212 (33%), Gaps = 17/212 (8%)
Query: 1 EIGECFDSLS--ENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRK 58
E+ + + E V++ S ++F +G ++ + A K +
Sbjct: 62 ELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFMLGLS--------THAWKVNFCKF 113
Query: 59 LITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKD--AWFTLKEVD-IG 115
T S ++AV+GAC GGG L A D Y D + +L EV +G
Sbjct: 114 TNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLG 173
Query: 116 LTADVGALQRL--PRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIE 173
+ G L R+ R + + + A+ LV ++
Sbjct: 174 VLPGTGGLTRVTDKRKVR-HDRADIFCTVVEGVRGERAKAWRLVDEVVKP-NQFDQAIQA 231
Query: 174 LGELIASKSPVAVQGTKKTLVFSRDHAVEEGL 205
+A++S L E+GL
Sbjct: 232 RALELAAQSDRPAHAQGVPLTRIERTDREDGL 263
Score = 61.2 bits (148), Expect = 7e-11
Identities = 43/209 (20%), Positives = 80/209 (38%), Gaps = 28/209 (13%)
Query: 1 EIGECFDSLSENE-ECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 59
E + S+ NE + G D +L+ + + +D +R+
Sbjct: 312 EFDDAILSMRTNELAVGTWVFRTEG-------DARHLLAADASLMQHKDHW----FVRET 360
Query: 60 ITTYQKSISSLERCPKPVISAV-HGACIGGGMS-LITAADIRYATKDAWFTLKEVDIGLT 117
I +++++ ++ + + + + G+C G + L AAD Y +E I L+
Sbjct: 361 IGLLRRTLARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPAITLS 420
Query: 118 AD-------VGALQRLP-RIIGNQSLVNEI-AFTARKIEAAEARECGLVSKLYDDK--ES 166
V RL R ++ + + + I+ EA GLV+ DD
Sbjct: 421 EVNFGLYPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTASPDDIDWAD 480
Query: 167 LLAGAIELGELIASKSPVAVQGTKKTLVF 195
+ A+E E A+ SP A+ G + L F
Sbjct: 481 EIRIALE--E-RAAMSPDALTGLEANLRF 506
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase,
peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A
{Arabidopsis thaliana}
Length = 725
Score = 114 bits (288), Expect = 5e-29
Identities = 40/192 (20%), Positives = 80/192 (41%), Gaps = 12/192 (6%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
+ ++ + + I+++ A F+ G D+SG + + ++ +
Sbjct: 38 NLKSNYEEALSRNDVKAIVITGAKGRFSGGFDISGFGEMQKGNVKE---------PKAGY 88
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
+ LE KP ++A+ G +GGG+ L A R + A L E+ +G+
Sbjct: 89 ISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPGF 148
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIEL-GELIA 179
G QRLPR++G + I T++ ++A E GL+ + L+ A +++
Sbjct: 149 GGTQRLPRLVGLTKALEMIL-TSKPVKAEEGHSLGLIDAVVPP-AELVTTARRWALDIVG 206
Query: 180 SKSPVAVQGTKK 191
+ P +K
Sbjct: 207 RRKPWVSSVSKT 218
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric
complex, lyase, oxidoreductase/transferase complex,
lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP:
a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A*
1wdm_A* 2d3t_A*
Length = 715
Score = 109 bits (274), Expect = 5e-27
Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 11/181 (6%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
E+ + D++ + + +I+S+ +F G D++ + + + L
Sbjct: 39 ELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDAE---------LIAGN 89
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
K S E P ++A++G +GGG+ + AAD R A L EV +G+
Sbjct: 90 LEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGF 149
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
G RLPR+IG + V E + ++ A +A + V + + L A A++L + S
Sbjct: 150 GGTVRLPRLIGVDNAV-EWIASGKENRAEDALKVSAVDAVVTA-DKLGAAALDLIKRAIS 207
Query: 181 K 181
Sbjct: 208 G 208
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway,
oxidoreductase, lipid metabolism, LY isomerase,
peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A
{Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A*
2x58_A*
Length = 742
Score = 106 bits (267), Expect = 3e-26
Identities = 45/216 (20%), Positives = 83/216 (38%), Gaps = 23/216 (10%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
E+ + + I++ A F AG D+ G + +A V
Sbjct: 51 EVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFTPGLALGSLVDE--------- 101
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
++R KPV++A+ G +GGG+ L R A A L EV +G+
Sbjct: 102 ---------IQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGA 152
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
Q LPR++G + ++ + + + A EA G++ + + AI+ + I
Sbjct: 153 RGTQLLPRVVGVPVAL-DLITSGKYLSADEALRLGILDAVVKS--DPVEEAIKFAQKIID 209
Query: 181 KSPVAVQGTKKTL--VFSRDHAVEEGLNQVDKESKN 214
K + K + + + D E + +V K+
Sbjct: 210 KPIEPRRIFNKPVPSLPNMDSVFAEAIAKVRKQYPG 245
>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A,
beta-hydroxyisobutyryl acid, querceti structural
genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}
Length = 363
Score = 75.4 bits (186), Expect = 8e-16
Identities = 39/161 (24%), Positives = 65/161 (40%), Gaps = 20/161 (12%)
Query: 1 EIGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLSLGQE-IAEQEDVARKSKILRK 58
+I ++ E +II+ AG K F AG D+ + + R+ +L
Sbjct: 37 QIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYMLNN 96
Query: 59 LITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTA 118
+ + KP ++ +HG +GGG+ L R AT+ F + E IGL
Sbjct: 97 AVGSC----------QKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFP 146
Query: 119 DVGA---LQRLPRIIGNQSLVNEIAFTARKIEAAEARECGL 156
DVG L RL +G +A T +++ + G+
Sbjct: 147 DVGGGYFLPRLQGKLGYF-----LALTGFRLKGRDVYRAGI 182
>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
MSE; 2.30A {Shewanella oneidensis}
Length = 407
Score = 74.4 bits (183), Expect = 2e-15
Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 24/165 (14%)
Query: 1 EIGECFDSLSENEECRVIILSAAG-KIFTAGLDL-----SGMLSLGQEIAEQEDVARKSK 54
+ + ++ ++L +G K F AG D+ + + + GQ + +
Sbjct: 73 AMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQVTEVAKVFFEEEY 132
Query: 55 ILRKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDI 114
L L+ TY KPV+ G +GGG+ L+ A + T+ + + EV I
Sbjct: 133 RLDYLLHTY----------GKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTI 182
Query: 115 GLTADVGA---LQRLPRIIGNQSLVNEIAFTARKIEAAEARECGL 156
GL DVG L R+P +G + TA + AA+A GL
Sbjct: 183 GLYPDVGGSYFLNRMPGKMGLF-----LGLTAYHMNAADACYVGL 222
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.7 bits (144), Expect = 3e-10
Identities = 42/233 (18%), Positives = 75/233 (32%), Gaps = 70/233 (30%)
Query: 35 GMLSLGQEIAEQEDVARK--SKILRKLITTYQKSISSLERCPKPVISAVHGACIGG---- 88
GM G ++ + A+ ++ TY SI + PV +H G
Sbjct: 1630 GM---GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVI-NNPVNLTIHFGGEKGKRIR 1685
Query: 89 ----GMSLITAADIRYATKDAWFTLKEVDIGLT-----ADVGAL------QRLPRIIGNQ 133
M T D + T+ KE++ T ++ G L Q P +
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKI---FKEINEHSTSYTFRSEKGLLSATQFTQ--PAL---- 1736
Query: 134 SLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIE--LGE---LIASKSPV---- 184
K + + GL+ ++ AG LGE L AS + V
Sbjct: 1737 -------TLMEKAAFEDLKSKGLI-----PADATFAG---HSLGEYAAL-ASLADVMSIE 1780
Query: 185 -AVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDRRNCNKGVSPERMSHDCPE 236
V+ +VF R ++ V ++ + ++P R++ +
Sbjct: 1781 SLVE-----VVFYRGMTMQV---AVPRDELGRSNYGMI--AINPGRVAASFSQ 1823
Score = 54.3 bits (130), Expect = 2e-08
Identities = 56/315 (17%), Positives = 92/315 (29%), Gaps = 82/315 (26%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
E L A K+FT GL++ L +D I LI
Sbjct: 190 FSAETLSELIRTT-------LDAEKVFTQGLNILEWLE-NPSNTPDKDYLLSIPISCPLI 241
Query: 61 TTYQ-----KSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAW--FTLKEVD 113
Q + L P + S + GA G L+TA I A D+W F
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLKGA-TGHSQGLVTAVAI--AETDSWESF------ 292
Query: 114 IGLTADVGALQRLPRIIG--NQSLVNEIAFTARKIEAAEARECGL------VSKLYDDK- 164
+ A+ L IG + +E + G+ +S L ++
Sbjct: 293 --FVSVRKAITVL-FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349
Query: 165 ESLLA---------GAIELGELIASKSPVAVQGTKKTLV-FS---RDHAVEEGLNQVDKE 211
+ + +E+ L+ + V G ++L + R GL+Q
Sbjct: 350 QDYVNKTNSHLPAGKQVEIS-LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ---- 404
Query: 212 SKNGCDRRNCNKGV-------------SP------ERMSHDCP--ECLIGS----IGVFH 246
S+ R K S + ++ D + I V+
Sbjct: 405 SRIPFSER---KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 247 TLDRVDLNQCDEDLA 261
T D DL ++
Sbjct: 462 TFDGSDLRVLSGSIS 476
Score = 33.9 bits (77), Expect = 0.058
Identities = 37/228 (16%), Positives = 56/228 (24%), Gaps = 98/228 (42%)
Query: 19 ILSAAGKI----FTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCP 74
L + G I AG SLG E Y
Sbjct: 1746 DLKSKGLIPADATFAGH------SLG------E---------------Y----------- 1767
Query: 75 KPVISAVHGACIGGGMSLITAADI---RYATKDAWFTLKEVDIGLTADVGALQRLPRIIG 131
+A+ A + MS+ + ++ R G+T V A+ R
Sbjct: 1768 ----AAL--ASLADVMSIESLVEVVFYR---------------GMTMQV-AVPRDELGRS 1805
Query: 132 NQSL--VNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGEL--IA-SKSP--- 183
N + +N A + A V K G L I
Sbjct: 1806 NYGMIAINPGRVAASFSQEALQYVVERVGK-------------RTGWLVEIVNYNVENQQ 1852
Query: 184 VAVQGTKKTLVFSRDHAVEEGLNQVDKESK-NGCDRRNCNKGVSPERM 230
G + A++ + V K D K +S E +
Sbjct: 1853 YVAAGDLR--------ALDT-VTNVLNFIKLQKIDIIELQKSLSLEEV 1891
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.8 bits (123), Expect = 1e-07
Identities = 44/247 (17%), Positives = 82/247 (33%), Gaps = 58/247 (23%)
Query: 48 DVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIR-YATKDA- 105
+V+R L KL ++++ L P + + G +G G + + Y +
Sbjct: 130 NVSRLQPYL-KL----RQALLELR--PAKNV-LIDGV-LGSGKTWVALDVCLSYKVQCKM 180
Query: 106 -----WFTLKEVDIGLTADVGALQRL-PRIIGNQSLVNEIAFTAR-KIEAAEARECGLV- 157
W LK + + LQ+L +I N + ++ + + +I + +A L+
Sbjct: 181 DFKIFWLNLKNCNSP-ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 158 SKLYDDKESLLAGAIELGEL--IASKSPV-AVQGTKKTLVFSRDHAV------------- 201
SK Y + LL + L + + A + K L+ +R V
Sbjct: 240 SKPY--ENCLL---V----LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 202 ----EEGLNQVDKESKNGCDRR-NCNKGVSPERMSHDCPECLIGSIGVF-----HTLDRV 251
L E K+ + +C P + P + I T D
Sbjct: 291 LDHHSMTLT--PDEVKSLLLKYLDCRPQDLPREVLTTNP-RRLSIIAESIRDGLATWDNW 347
Query: 252 DLNQCDE 258
CD+
Sbjct: 348 KHVNCDK 354
Score = 40.6 bits (94), Expect = 5e-04
Identities = 32/326 (9%), Positives = 79/326 (24%), Gaps = 114/326 (34%)
Query: 12 NEECR--VIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISS 69
+ C + KIF L+L + + + K+L ++ +
Sbjct: 168 LDVCLSYKVQCKMDFKIF--------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 70 LERCPKPVISA-----------VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG--- 115
+ S + C L+ +++ +A ++
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENC------LLVLLNVQ----NAK-AWNAFNLSCKI 268
Query: 116 --LTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAI- 172
T + + + ++ + + L D+ +SLL +
Sbjct: 269 LLTTRF-------------KQVTDFLSAATTTHISLDHHSMTLTP---DEVKSLLLKYLD 312
Query: 173 ----ELGELIASKSPVAV--------------QGTKKTLVFSRDHAVEEGLNQVDKESKN 214
+L + + +P + K +E LN ++
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA--- 369
Query: 215 GCDRRNC-------NKGVS-PER--------MSHDCPE---------CLI------GSIG 243
+ R P + L+ +I
Sbjct: 370 --EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 244 VFHTLDRVDLNQCDEDLALLFGGKHR 269
+ ++ + + + AL HR
Sbjct: 428 I-PSIYLELKVKLENEYAL-----HR 447
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory
domains, kinase transferase, PSI-2, protein structure
initiative; HET: LYS; 3.00A {Clostridium
acetobutylicum}
Length = 446
Score = 31.9 bits (73), Expect = 0.20
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Query: 2 IGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLIT 61
+ + + + II SA GK ++ +L L + + + +
Sbjct: 20 FKKVKGIIDSDANRKYIIPSAPGKRTNKDYKITDLLYLCNAHVKNGIPFD--DVFKLISQ 77
Query: 62 TYQKSISSLE 71
Y + +S L
Sbjct: 78 RYTEIVSELN 87
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex,
alpha / beta motif, protease, membr protein stomatin,
hydrolase-protein binding complex; 2.25A {Pyrococcus
horikoshii} PDB: 3bpp_A 2deo_A
Length = 230
Score = 31.5 bits (71), Expect = 0.23
Identities = 18/146 (12%), Positives = 42/146 (28%), Gaps = 18/146 (12%)
Query: 67 ISSLERCPKPVISAVH---GACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGAL 123
+ +++ PVI V+ + G + + + +G + + +
Sbjct: 60 VQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSII 119
Query: 124 QRLPRIIGN-QSLVNEIA-FTARKIE-------------AAEARECGLVSKLYDDKESLL 168
+ P I + + +A + R EA + G++ + D LL
Sbjct: 120 EAPPAITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINELL 179
Query: 169 AGAIELGELIASKSPVAVQGTKKTLV 194
+ + I V
Sbjct: 180 KKSNGMKTKIPVNGRYVTLNFTNVEV 205
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix,
tumour suppressor, DNA damage, DNA recombination, DNA
repair, hydrolase, magnesium; NMR {Mus musculus}
Length = 87
Score = 29.9 bits (67), Expect = 0.24
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 46 QEDVARKSKILRKLITTYQKSISSLERCPKPVIS 79
E + R +QK++ SL+R P P+ S
Sbjct: 23 TEWRDEAASRGRHTRFVFQKALRSLQRYPLPLRS 56
>3ky7_A TRNA (guanine-N(1)-)-methyltransferase; putative tRNA
(guanine-7-)-methyltransferase, structural GEN
infectious diseases; 2.35A {Staphylococcus aureus subsp}
Length = 269
Score = 30.2 bits (69), Expect = 0.56
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 2 IGECFDSLSENEECRVIILSAAGKIFT 28
+ + L E+ RVI++ G+ F+
Sbjct: 91 VFNAMEDLDVTEQARVILMCPQGEPFS 117
>1r9d_A Glycerol dehydratase; radical SAM, lyase; 1.80A {Clostridium
butyricum} SCOP: c.7.1.1 PDB: 1r8w_A 1r9e_A
Length = 787
Score = 29.9 bits (67), Expect = 1.1
Identities = 20/99 (20%), Positives = 32/99 (32%), Gaps = 29/99 (29%)
Query: 71 ERCPKPVISAVHGACIGGGMS-----------------LITAADIRYATKDAWF-----T 108
ER P P +S++ CIG G S + D A K F T
Sbjct: 515 ERAPLPFLSSMVDNCIGKGKSLQDGGAEYNFSGPQGVGVANIGDSLVAVKKIVFDENKIT 574
Query: 109 LKEVDIGLTADVGALQRLPRIIG-------NQSLVNEIA 140
E+ L D + + ++ + V+ +A
Sbjct: 575 PSELKKTLNNDFKNSEEIQALLKNAPKFGNDIDEVDNLA 613
>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump,
carboxyltransferase, lyase; 2.20A {Acidaminococcus
fermentans} SCOP: c.14.1.4 c.14.1.4
Length = 587
Score = 28.5 bits (64), Expect = 2.5
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 76 PVISAVHGACIGGG 89
PVI ++G GG
Sbjct: 183 PVIVGIYGTNPAGG 196
>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit;
carboxyltransferase, beta-BETA-alpha superhelix, ligase;
HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B*
3u9t_B
Length = 555
Score = 28.3 bits (64), Expect = 3.3
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 76 PVISAVHGACIGGG 89
P I+ V G+C GG
Sbjct: 199 PQIAVVMGSCTAGG 212
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387,
stronGly BENT five-stranded antiparallel beta- sheet,
structural genomics, PSI; NMR {Danio rerio} SCOP:
b.38.1.5 PDB: 2vxf_A
Length = 95
Score = 26.3 bits (58), Expect = 3.8
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 7/34 (20%)
Query: 86 IGGGMSLITAADIRYA-------TKDAWFTLKEV 112
IG +SLI+ A+IRY T+++ L +V
Sbjct: 18 IGSKISLISKAEIRYEGILYTIDTENSTVALAKV 51
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM
proteins, translational repression, transcription; NMR
{Drosophila melanogaster}
Length = 88
Score = 26.3 bits (58), Expect = 4.0
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 86 IGGGMSLITAADIRY 100
+G +SLI+ ADIRY
Sbjct: 12 LGSKISLISKADIRY 26
>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport,
biotin, glutamate fermentation, lyase; HET: COO; 1.75A
{Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*
Length = 588
Score = 28.1 bits (63), Expect = 4.0
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 76 PVISAVHGACIGGG 89
PVI ++G GG
Sbjct: 184 PVIVGIYGTNPAGG 197
>3knu_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle
structural genomics center for infect disease, tRNA
methyl transferase; 2.25A {Anaplasma phagocytophilum}
Length = 253
Score = 27.2 bits (61), Expect = 5.5
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 2 IGECFDSL-SENEECRVIILSAAGKIFT 28
+G C D + S + +++ S G FT
Sbjct: 88 LGRCIDEVLSLHPNTKLMFTSPRGVSFT 115
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12;
1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Length = 418
Score = 27.3 bits (61), Expect = 5.8
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 134 SLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIASKSPVAV 186
LV++ AF R I+ E LV +L D + L + +A PVAV
Sbjct: 110 GLVSK-AFAPRVIKRLEPEITALVDQLLDA---VDGPEFNLIDNLAYPLPVAV 158
>3quv_A TRNA (guanine-N(1)-)-methyltransferase; sssgcid, seattle
structural genomics center for infectious D ssgcid,
tRNA methyltransferase; 1.70A {Mycobacterium abscessus}
Length = 246
Score = 27.1 bits (61), Expect = 6.4
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 2 IGECFDSLSENEECRVIILSAAGKIFT 28
G+ D + E +++ + AG FT
Sbjct: 70 WGDALDEICT-SETLLVVPTPAGYPFT 95
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural
genomics, niaid, national institute of allergy AN
infectious diseases; HET: PLP; 1.50A {Clostridium
difficile} PDB: 4dgt_A*
Length = 391
Score = 27.1 bits (61), Expect = 6.7
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 6 FDSLSENEECRVIILSAAGKIF-TAGLDLS 34
S+S+ E I A K F AGL S
Sbjct: 219 MASISKEFEKNTITCMAPTKTFNIAGLQSS 248
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase,
metal-binding, AN biosynthesis, TIE-ROD mechanism of
action; HET: HEM; 1.59A {Saccharopolyspora erythraea}
PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Length = 411
Score = 26.8 bits (60), Expect = 7.7
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 134 SLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIASKSPVAV 186
+V+ AFT R I E R + L D + +L +++A PV +
Sbjct: 100 KVVSS-AFTPRTISDLEPRIRDVTRSLLAD----AGESFDLVDVLAFPLPVTI 147
>1oy5_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics,
TRMD, tRNA (M1G37) methyltransferase, B structure
funded by NIH; 2.60A {Aquifex aeolicus} SCOP: c.116.1.4
Length = 257
Score = 26.7 bits (60), Expect = 8.4
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 2 IGECFDSL-SENEECRVIILSAAGKIFT 28
I E +D + + V+I G+
Sbjct: 70 IYEAYDYVVENYGKPFVLITEPWGEKLN 97
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron,
metal-binding, monooxygenase, oxidoreductase; HET: HEM;
1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Length = 367
Score = 26.8 bits (60), Expect = 8.6
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 7/53 (13%)
Query: 134 SLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIASKSPVAV 186
+L + AF + RE + KL + L ++ E A P+ V
Sbjct: 81 NLTAD-AFNPSNLPVDFVRE--VTVKLLSE----LDEEFDVIESFAIPLPILV 126
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A
{Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Length = 416
Score = 26.8 bits (60), Expect = 8.9
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 140 AFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIASKSPVAV 186
FT R+I A + V +L D L G + + P V
Sbjct: 118 PFTPRRITAVQPFVRSTVEQLIDK---LPQGDFDFVQHFPHPLPALV 161
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate;
HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3
PDB: 1c7o_A*
Length = 399
Score = 26.7 bits (60), Expect = 9.9
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 6 FDSLSENEECRVIILSAAGKIF-TAGLDLS 34
F S+ E + I +A K F AG+ +S
Sbjct: 219 FQSIDEQLADKTITFTAPSKTFNIAGMGMS 248
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf
structural genomics, center for structural genomics of
INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus
anthracis str} PDB: 3t32_A*
Length = 383
Score = 26.7 bits (60), Expect = 9.9
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 6 FDSLSENEECRVIILSAAGKIF-TAGLDLS 34
F SLSE R I A K F AGL S
Sbjct: 211 FASLSEELAARTITCMAPSKTFNIAGLQAS 240
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein
complex, cytochrome P450 fold, carrier protein, 4-helix
bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus
subtilis} PDB: 3ejd_B* 3eje_B*
Length = 404
Score = 26.4 bits (59), Expect = 9.9
Identities = 23/125 (18%), Positives = 36/125 (28%), Gaps = 23/125 (18%)
Query: 76 PVISAVHGACIGGGMSLITA-ADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQ- 133
P+ G+ + +T + KDA F V L Q L +
Sbjct: 27 PI---YKGSFLKYPGWYVTGYEETAAILKDARFK---VRTPLPESSTKYQDLSHVQNQMM 80
Query: 134 ------------SLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIASK 181
+L + AFT R E+ + V L D + +E+ A
Sbjct: 81 LFQNQPDHRRLRTLASG-AFTPRTTESYQPYIIETVHHLLDQVQG--KKKMEVISDFAFP 137
Query: 182 SPVAV 186
V
Sbjct: 138 LASFV 142
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.388
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,127,130
Number of extensions: 249299
Number of successful extensions: 956
Number of sequences better than 10.0: 1
Number of HSP's gapped: 715
Number of HSP's successfully gapped: 115
Length of query: 275
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 183
Effective length of database: 4,133,061
Effective search space: 756350163
Effective search space used: 756350163
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.2 bits)