RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14406
(275 letters)
>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 260
Score = 110 bits (276), Expect = 1e-29
Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
E+ + ++ E+ I+L+ K F AG D+ M + +
Sbjct: 38 ELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGK------------ 85
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
+ + R KPVI+AV+G +GGG L DI YA + A F E+ +G
Sbjct: 86 --FLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGA 143
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
G QRL R +G +SL E+ T +I A +A++ GLVSK++ + + AI+ E IA+
Sbjct: 144 GGTQRLTRAVG-KSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETL-VEEAIQCAEKIAN 201
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
S + V K+++ + + + EG
Sbjct: 202 NSKIIVAMAKESVNAAFEMTLTEGN 226
>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 275
Score = 87.9 bits (216), Expect = 4e-21
Identities = 114/206 (55%), Positives = 159/206 (77%), Gaps = 1/206 (0%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
E+ ECF +S++ +CR +++S AGK+FT+G+DL M S + +DVAR + LR LI
Sbjct: 35 ELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQ-PPGDDVARIAWYLRDLI 93
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
+ YQK+ + +E+CPKPVI+A+HG CIGGG+ LI+A DIRY T+DA+F +KEVD+GL ADV
Sbjct: 94 SRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADV 153
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
G LQRLP++IGN+SLVNE+ FTARK+ A EA + GLVS+++ DK+ +L A L I+S
Sbjct: 154 GTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISS 213
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGLN 206
KSPVAVQG+K L++SRDH+V+E L+
Sbjct: 214 KSPVAVQGSKINLIYSRDHSVDESLD 239
>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 266
Score = 76.3 bits (186), Expect = 6e-17
Identities = 38/223 (17%), Positives = 73/223 (32%), Gaps = 9/223 (4%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
+GE + N + I+ ++G+ F++G D G+ + + + SK + +
Sbjct: 36 YLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGD-DTNKYPSETSKWVSNFV 94
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
+ + K +I ++G IG +L+ DI Y+ D + L
Sbjct: 95 ARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITE 154
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLL-----AGAIELG 175
G + + E + + E G +SK ++ S EL
Sbjct: 155 GGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELR 214
Query: 176 ELIASKSPVAVQGTKKTLVFSRDHAVEEGLNQVDKESKNGCDR 218
E + + G KK L + A + E
Sbjct: 215 EKVKGLYLPSCLGMKKLLKSNHIDAFNKAN---SVEVNESLKY 254
>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus
thermophilus [TaxId: 274]}
Length = 253
Score = 65.1 bits (157), Expect = 5e-13
Identities = 51/205 (24%), Positives = 93/205 (45%), Gaps = 12/205 (5%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
+ + D L + R ++L+ GK F+AG DL+ + + ++ +
Sbjct: 30 SLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFL---------ERVTELGAEENYRHS 80
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
+ + + PKP ++AV+G + GG L A D+ ++A EV IG A +
Sbjct: 81 LSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAAL 140
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
+ L R +G + ++ T R +EA EA+ GLV++ L A L E +A
Sbjct: 141 VS-VILVRAVGEK-AAKDLLLTGRLVEAREAKALGLVNR-IAPPGKALEEAKALAEEVAK 197
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
+P +++ TK+ L+ +E+G
Sbjct: 198 NAPTSLRLTKELLLALPGMGLEDGF 222
>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 297
Score = 59.8 bits (143), Expect = 4e-11
Identities = 46/212 (21%), Positives = 75/212 (35%), Gaps = 9/212 (4%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIA------EQEDVARKSK 54
E+ D + + V++L+ G G + D A
Sbjct: 51 ELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVD 110
Query: 55 ILRKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKD-AWFTLKEVD 113
+ R + + PK VI V+G GGG SL D+ A+++ A F + D
Sbjct: 111 VARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDAD 170
Query: 114 IGLTADVGALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIE 173
+G L R +G + EI F R A + + G V+ + + E ++
Sbjct: 171 VGSFDGGYGSAYLARQVGQKF-AREIFFLGRTYTAEQMHQMGAVNAVAEHAEL-ETVGLQ 228
Query: 174 LGELIASKSPVAVQGTKKTLVFSRDHAVEEGL 205
I +KSP A + K D V + L
Sbjct: 229 WAAEINAKSPQAQRMLKFAFNLLDDGLVGQQL 260
>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA
isomerase {Human (Homo sapiens) [TaxId: 9606]}
Length = 245
Score = 52.4 bits (124), Expect = 1e-08
Identities = 37/205 (18%), Positives = 82/205 (40%), Gaps = 11/205 (5%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
EI + ++ + +L+ G +++G DL+ + E++ +
Sbjct: 34 EIMRALKAA-SKDDSIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKA--------KNNA 84
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
++ + PKP+I+ V+G +G ++L+ D YA+ A F +G + +
Sbjct: 85 VLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEG 144
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
+ P+I+ E+ +K+ A EA GLV++++ D + A
Sbjct: 145 CSSYTFPKIMSPAK-ATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKE-VWTRLKAFAK 202
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGL 205
P A++ +K+ + +
Sbjct: 203 LPPNALRISKEVIRKREREKLHAVN 227
>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 52.1 bits (123), Expect = 1e-08
Identities = 50/208 (24%), Positives = 87/208 (41%), Gaps = 15/208 (7%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
+ + D+L +++ R II+ + + V++ ++ +
Sbjct: 37 MLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIA 96
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
P P I+A+ G +GGG+ L A DIR A A L E + +
Sbjct: 97 -----------NLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGG 145
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLA---GAIELGEL 177
G QRLPR I SL E+ F+AR ++ EA+ GL+S + + + A A++L
Sbjct: 146 GGTQRLPRAI-GMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLARE 204
Query: 178 IASKSPVAVQGTKKTLVFSRDHAVEEGL 205
+ PVA++ K + + + GL
Sbjct: 205 FLPQGPVAMRVAKLAINQGMEVDLVTGL 232
>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus
erythropolis [TaxId: 1833]}
Length = 249
Score = 45.5 bits (106), Expect = 2e-06
Identities = 43/207 (20%), Positives = 78/207 (37%), Gaps = 14/207 (6%)
Query: 1 EIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 60
E+ CF ++ + E +V+IL+ G F EI ++I
Sbjct: 44 ELAYCFHDIACDRENKVVILTGTGPSFC------------NEIDFTSFNLGTPHDWDEII 91
Query: 61 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADV 120
Q+ +++L PVI+AV+G +DI A + A F
Sbjct: 92 FEGQRLLNNLLSIEVPVIAAVNGPVTNAPEI-PVMSDIVLAAESATFQDGPHFPSGIVPG 150
Query: 121 GALQRLPRIIGNQSLVNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIELGELIAS 180
+ + + T ++++A A + G V+++ + + LL A EL IA
Sbjct: 151 DGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSE-QELLPRAWELARGIAE 209
Query: 181 KSPVAVQGTKKTLVFSRDHAVEEGLNQ 207
K +A + +K L +E L+
Sbjct: 210 KPLLARRYARKVLTRQLRRVMEADLSL 236
>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB
{Pectobacterium carotovorum [TaxId: 554]}
Length = 230
Score = 44.1 bits (102), Expect = 5e-06
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGL 205
+ +LL AI ++AS A TK+ + H +E+
Sbjct: 178 VVESSALLDAAITQAHVMASYPASAFINTKRAVNKPFIHLLEQTR 222
>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Human (Homo
sapiens), mitochondrial [TaxId: 9606]}
Length = 249
Score = 36.4 bits (82), Expect = 0.002
Identities = 6/45 (13%), Positives = 14/45 (31%)
Query: 161 YDDKESLLAGAIELGELIASKSPVAVQGTKKTLVFSRDHAVEEGL 205
+E + + A+ + A Q TK + + +
Sbjct: 183 VVPEEQVQSTALSAIAQWMAIPDHARQLTKAMMRKATASRLVTQR 227
>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 333
Score = 33.0 bits (75), Expect = 0.029
Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 17/100 (17%)
Query: 76 PVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSL 135
I+ V +G G L+ + I LT I N+ L
Sbjct: 242 FTITLVTCRSVGIGAYLVRLGQRAIQVEGQP-------IILTG--------APAI-NKML 285
Query: 136 VNEIAFTARKIEAAEA-RECGLVSKLYDDKESLLAGAIEL 174
E+ + ++ + G+ D + + +E
Sbjct: 286 GREVYTSNLQLGGTQIMYNNGVSHLTAVDDLAGVEKIVEW 325
>d1r9da_ c.7.1.1 (A:) Glycerol dehydratase DhaB1 {Clostridium
butyricum [TaxId: 1492]}
Length = 786
Score = 27.5 bits (61), Expect = 2.1
Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 22/84 (26%)
Query: 71 ERCPKPVISAVHGACIGGGM-----------------SLITAADIRYATKDAWF-----T 108
ER P P +S++ CIG G + D A K F T
Sbjct: 514 ERAPLPFLSSMVDNCIGKGKSLQDGGAEYNFSGPQGVGVANIGDSLVAVKKIVFDENKIT 573
Query: 109 LKEVDIGLTADVGALQRLPRIIGN 132
E+ L D + + ++ N
Sbjct: 574 PSELKKTLNNDFKNSEEIQALLKN 597
>d2vxfa1 b.38.1.5 (A:6-85) LSM14 homolog A (Lsm14a) {Zebrafish
(Danio rerio) [TaxId: 7955]}
Length = 80
Score = 25.4 bits (56), Expect = 2.3
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 7/34 (20%)
Query: 86 IGGGMSLITAADIRYA-------TKDAWFTLKEV 112
IG +SLI+ A+IRY T+++ L +V
Sbjct: 3 IGSKISLISKAEIRYEGILYTIDTENSTVALAKV 36
>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B
subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}
Length = 258
Score = 26.3 bits (57), Expect = 3.6
Identities = 15/99 (15%), Positives = 27/99 (27%), Gaps = 15/99 (15%)
Query: 76 PVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGLTADVGALQRLPRIIGNQSL 135
P IS V G C GG + D + + +T +G + L
Sbjct: 162 PQISLVVGPCAGGAVYSPAITD------FTVMVDQTSHMFITGPDVIKTVTGEDVGFEEL 215
Query: 136 VNEIAFTARKIEAAEARECGLVSKLYDDKESLLAGAIEL 174
G+ + D++ + +L
Sbjct: 216 GG---------ARTHNSTSGVAHHMAGDEKDAVEYVKQL 245
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.388
Gapped
Lambda K H
0.267 0.0712 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 964,872
Number of extensions: 42449
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 15
Length of query: 275
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 191
Effective length of database: 1,254,276
Effective search space: 239566716
Effective search space used: 239566716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.8 bits)