BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14407
(522 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 148 bits (374), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 144/520 (27%), Positives = 229/520 (44%), Gaps = 67/520 (12%)
Query: 8 SEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENF-AKLGY 66
S +D Y EP + +R+AR K+ +GG S+ + + D + + AK G
Sbjct: 67 SGYDWDYPIEPQENGNSFMRHARAKV-----MGGCSSHNSCIAFWAPREDLDEWEAKYGA 121
Query: 67 NGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQEL 126
GW + + + E HG G PV L + + ++
Sbjct: 122 TGWNAEAAWPLYKRLETNEDA--GPDAPHHGDSG--PVHLMNVPPKDPTGVALLDACEQA 177
Query: 127 GYPCPKDMNDRYVDVGFAELPGMTRY--GLRFSAADAYLTPIAGKRTNLYVLKRSKVTKV 184
G P K N V A + R G R S++ +Y+ PI ++ N +L + ++
Sbjct: 178 GIPRAK-FNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIV-EQENFTLLTGLRARQL 235
Query: 185 IINDQNVATGVEYVNSK-GETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 243
+ + TGV+ V+S G T R+TA EV+L+ GAI +LL+LSGIGP AHL E I
Sbjct: 236 VFDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIE 295
Query: 244 VKQDLR-VGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTG 302
V D VGE+L+ + + V+ F A Q MV + + W
Sbjct: 296 VLVDSPGVGEHLQDHPEG---VVQFEA-------KQPMVAE----------STQWWEIGI 335
Query: 303 YIDTLQNTARPDLEIHL--LYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGV-I 359
+ T RPDL +H + F N +R+ T+ G +
Sbjct: 336 FTPTEDGLDRPDLMMHYGSVPFDMNTLRHGYPT--------------------TENGFSL 375
Query: 360 SMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPE--DLATLIRGTDYITRLEQTEAIRL 417
+ ++ + +S G V L+S D P +D ++PE D+ ++ G + A+
Sbjct: 376 TPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAE 435
Query: 418 AGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKV 477
G +S +EA ++ YIR T +PVGTV MG +D + + P+L+V
Sbjct: 436 WTGRELSPGVEA------QTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRV 489
Query: 478 KGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTS 517
KG+ GLRVAD SV+P + + MIGE+CADL++++
Sbjct: 490 KGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIRSA 529
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 148 bits (374), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 144/520 (27%), Positives = 229/520 (44%), Gaps = 67/520 (12%)
Query: 8 SEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENF-AKLGY 66
S +D Y EP + +R+AR K+ +GG S+ + + D + + AK G
Sbjct: 67 SGYDWDYPIEPQENGNSFMRHARAKV-----MGGCSSHNSCIAFWAPREDLDEWEAKYGA 121
Query: 67 NGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQEL 126
GW + + + E HG G PV L + + ++
Sbjct: 122 TGWNAEAAWPLYKRLETNEDA--GPDAPHHGDSG--PVHLMNVPPKDPTGVALLDACEQA 177
Query: 127 GYPCPKDMNDRYVDVGFAELPGMTRY--GLRFSAADAYLTPIAGKRTNLYVLKRSKVTKV 184
G P K N V A + R G R S++ +Y+ PI ++ N +L + ++
Sbjct: 178 GIPRAK-FNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIV-EQENFTLLTGLRARQL 235
Query: 185 IINDQNVATGVEYVNSK-GETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 243
+ + TGV+ V+S G T R+TA EV+L+ GAI +LL+LSGIGP AHL E I
Sbjct: 236 VFDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIE 295
Query: 244 VKQDLR-VGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTG 302
V D VGE+L+ + + V+ F A Q MV + + W
Sbjct: 296 VLVDSPGVGEHLQDHPEG---VVQFEA-------KQPMVAE----------STQWWEIGI 335
Query: 303 YIDTLQNTARPDLEIHL--LYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGV-I 359
+ T RPDL +H + F N +R+ T+ G +
Sbjct: 336 FTPTEDGLDRPDLMMHYGSVPFDMNTLRHGYPT--------------------TENGFSL 375
Query: 360 SMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPE--DLATLIRGTDYITRLEQTEAIRL 417
+ ++ + +S G V L+S D P +D ++PE D+ ++ G + A+
Sbjct: 376 TPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAE 435
Query: 418 AGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKV 477
G +S +EA ++ YIR T +PVGTV MG +D + + P+L+V
Sbjct: 436 WTGRELSPGVEA------QTDEELQDYIRKTHNTAYHPVGTVRMGAVEDEMSPLDPELRV 489
Query: 478 KGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTS 517
KG+ GLRVAD SV+P + + MIGE+CADL++++
Sbjct: 490 KGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIRSA 529
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 144/520 (27%), Positives = 228/520 (43%), Gaps = 67/520 (12%)
Query: 8 SEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENF-AKLGY 66
S +D Y EP + +R+AR K+ +GG S+ + D + + AK G
Sbjct: 67 SGYDWDYPIEPQENGNSFMRHARAKV-----MGGCSSHNACIAFWAPREDLDEWEAKYGA 121
Query: 67 NGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQEL 126
GW + + + E HG G PV L + + ++
Sbjct: 122 TGWNAEAAWPLYKRLETNEDA--GPDAPHHGDSG--PVHLMNVPPKDPTGVALLDACEQA 177
Query: 127 GYPCPKDMNDRYVDVGFAELPGMTRY--GLRFSAADAYLTPIAGKRTNLYVLKRSKVTKV 184
G P K N V A + R G R S++ +Y+ PI ++ N +L + ++
Sbjct: 178 GIPRAK-FNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIV-EQENFTLLTGLRARQL 235
Query: 185 IINDQNVATGVEYVNSK-GETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 243
+ + TGV+ V+S G T R+TA EV+L+ GAI +LL+LSGIGP AHL E I
Sbjct: 236 VFDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIE 295
Query: 244 VKQDLR-VGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTG 302
V D VGE+L+ + + V+ F A Q MV + + W
Sbjct: 296 VLVDSPGVGEHLQDHPEG---VVQFEA-------KQPMVAE----------STQWWEIGI 335
Query: 303 YIDTLQNTARPDLEIHL--LYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGV-I 359
+ T RPDL +H + F N +R+ T+ G +
Sbjct: 336 FTPTEDGLDRPDLMMHYGSVPFDMNTLRHGYPT--------------------TENGFSL 375
Query: 360 SMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPE--DLATLIRGTDYITRLEQTEAIRL 417
+ ++ + +S G V L+S D P +D ++PE D+ ++ G + A+
Sbjct: 376 TPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAE 435
Query: 418 AGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKV 477
G +S +EA ++ YIR T +PVGTV MG +D + + P+L+V
Sbjct: 436 WTGRELSPGVEA------QTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRV 489
Query: 478 KGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTS 517
KG+ GLRVAD SV+P + + MIGE+CADL++++
Sbjct: 490 KGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIRSA 529
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 141/519 (27%), Positives = 225/519 (43%), Gaps = 47/519 (9%)
Query: 22 AGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVK 80
A G I G+ LGGSS+V ++ RG++ D++ +A + G GW +D ++ K
Sbjct: 67 AQAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRK 126
Query: 81 SE------DYRSVIYNESKAVHGTQGYLPVGL--FKNKENNIIREIFETSAQELGYPCPK 132
+E D + AVHGT G + + L F ++ + + ++E +
Sbjct: 127 NEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQSEEFFFN--P 184
Query: 133 DMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVI----IND 188
DM + +G + G R S++ AYL P A R NL VL ++VTK++ N
Sbjct: 185 DMGTGH-PLGISWSIASVGNGQRSSSSTAYLRP-AQSRPNLSVLINAQVTKLVNSGTTNG 242
Query: 189 QNVATGVEYVNSKG-ETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI-PVKQ 246
VEY +G T V A KEV+L+AG++ LL LSGIG + L V I +
Sbjct: 243 LPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVN 302
Query: 247 DLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVF-----KYLVNRIGPLSNAGLWSFT 301
+ VG NL + S ++ F ++ R GPL+ A + +
Sbjct: 303 NPSVGRNLSDHLLLPAAFFVNSNQTFDNIFRDSSEFNVDLDQWTNTRTGPLT-ALIANHL 361
Query: 302 GYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISM 361
++ N++ I + N + + N A + + M V +
Sbjct: 362 AWLRLPSNSS-----IFQTFPDPAAGPNSAHWETIFS-NQWFHPAIPRPDTGSFMSVTN- 414
Query: 362 SLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEA-----IR 416
+L++P + G + L +++P P I+ LS D+ T+I+ R +A IR
Sbjct: 415 ALISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRFLSGQAWADFVIR 474
Query: 417 LAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLK 476
L +A + YIR T +PVGT M VV PDLK
Sbjct: 475 PFDPRLRDPTDDAAIE----------SYIRDNANTIFHPVGTASMSPRGASWGVVDPDLK 524
Query: 477 VKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVK 515
VKG+ GLR+ D S+LP A + Y++G++ ADL+K
Sbjct: 525 VKGVDGLRIVDGSILPFAPNAHTQGPIYLVGKQGADLIK 563
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 135/514 (26%), Positives = 210/514 (40%), Gaps = 54/514 (10%)
Query: 34 TAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRS--VIYNE 91
T GK LGGSS++ + G ++ + + G W +D + Y KS Y +Y+
Sbjct: 85 TRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKSATYHDDPRLYSP 144
Query: 92 SKAVHGTQGYLPVGLFK-NKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMT 150
G G +P+ + E RE + + +G P +++ D E+ G+T
Sbjct: 145 ELEKIGGGGPIPISHAELIDEMAPFRENLTKAWKSMGQPLIENIYD-------GEMDGLT 197
Query: 151 RYG---LRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN-VATGVEYVNSKGETVR 206
R + ++L + N+ ++ ++IIN+ + GV V + G +
Sbjct: 198 HCCDTIYRGQRSGSFL--FVKNKPNITIVPEVHSKRLIINEADRTCKGVTVVTAAGNELN 255
Query: 207 VTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGENLKLNAQFTGPVM 265
A++EVIL+ G +LL+LSGIGP L I D R VG+NL P +
Sbjct: 256 FFADREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVDSRHVGQNL-----MDHPGV 310
Query: 266 AFSAPLKRTVYSQEMVFK-----------YLVNRIGPLSNAGLWSFTGY--IDTLQNTAR 312
F +K +++ + Y NR GP+ +GL G+ ID
Sbjct: 311 PFVLRVKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPVG-SGLLELVGFPRIDKYLEKDA 369
Query: 313 PDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAY---VNLNKRTDMGVISMSLVNPKS- 368
+ ++ + + DF TA+ K D + + LV P S
Sbjct: 370 EYRKAKAANGGKDPFSPLGQPHFELDFVCMFGTAFQWHFPTPKTGDHLTVVVDLVRPISD 429
Query: 369 CGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSLNLE 428
G+VTL SADP P I+ + D+ + G + L L G +E
Sbjct: 430 PGEVTLNSADPFQQPNINLNFFANDLDIIAMREGIRFSYDL-------LFKGEGFKDLVE 482
Query: 429 ACSQYPWR----STHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLR 484
S+YPW S + T +P GT + D VV P LKV GIK LR
Sbjct: 483 --SEYPWEMPLDSDKEMHRAVLDRCQTAFHPTGTARLSKNID-QGVVDPKLKVHGIKKLR 539
Query: 485 VADISVLPNAIITQSDAISYMIGEKCADLVKTSY 518
VAD SV+P + Y +GEKCAD++K +
Sbjct: 540 VADASVIPIIPDCRIQNSVYAVGEKCADMIKAEH 573
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 137/532 (25%), Positives = 211/532 (39%), Gaps = 54/532 (10%)
Query: 11 DHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAK-LGYNGW 69
D YL P + N I AGKGLGGS+ + + R +++ K G GW
Sbjct: 82 DQNYLTVPL------INNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGW 135
Query: 70 GYDETLKYFVKSEDYRSVIYNESKA-------VHGTQGYLPVGLFKNKE--NNIIREIFE 120
+D +Y K+E R+ + A HGT G + G N + + I++ +
Sbjct: 136 NWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMN 195
Query: 121 TSAQELGYPCPKDM---NDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLK 177
T LG P +D + R V + + + +R AA A+L P +R+NL +L
Sbjct: 196 T-VSALGVPVQQDFLCGHPRGVSM---IMNNLDENQVRVDAARAWLLPNY-QRSNLEILT 250
Query: 178 RSKVTKVIINDQNV---ATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPK 234
V KV+ A GV + +K V A EV+L AG+ + +L SGIG K
Sbjct: 251 GQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLK 310
Query: 235 AHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSN 294
+ LD+ + DL VG N++ T A SA + Q + F G +
Sbjct: 311 SVLDQANVTQLLDLPVGINMQDQTTTTVSSRASSAGAGQ---GQAVFFANFTETFGDYAP 367
Query: 295 AGLWSFTGYIDTL--QNTARPDLE-IHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLN 351
+D + AR + L Q + RN +++V A+ L
Sbjct: 368 QARDLLNTKLDQWAEETVARGGFHNVTALKVQYENYRNWL-------LDEDV--AFAELF 418
Query: 352 KRTDMGVISMSLVN--PKSCGKVTLKSADP-LAPPCIDTGILSEPEDLATLIRGTDYITR 408
T+ G I+ L + P + G V + S+DP L D DL +
Sbjct: 419 MDTE-GKINFDLWDLIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLARD 477
Query: 409 LEQTEAIR--LAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADD 466
L A++ AG TL NL + + W+ Y+ + V + M + +
Sbjct: 478 LTSQGAMKEYFAGETLPGYNLVQNA-----TLSQWSDYVLQNFRPNWHAVSSCSM-MSRE 531
Query: 467 PNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSY 518
VV KV G +GLRV D S+ P + + I Y + K AD + Y
Sbjct: 532 LGGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAILDDY 583
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 133/531 (25%), Positives = 206/531 (38%), Gaps = 45/531 (8%)
Query: 8 SEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAK-LGY 66
S DHAY + L N I +G GLGGS+ V + R +++ G
Sbjct: 74 SSVDHAY-----ETVELATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGN 128
Query: 67 NGWGYDETLKYFVKSEDYRSVIYNE-------SKAVHGTQGYLPVGLFKNKEN-NIIREI 118
GW +D Y +++E R+ + + + HG G + G ++ + I +
Sbjct: 129 EGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKA 188
Query: 119 FETSAQELGYPCPKDMN--DRYVDVGFAELPG-MTRYGLRFSAADAYLTPIAGKRTNLYV 175
++ ++ G P KD D + G + P + +R AA +L P +R NL V
Sbjct: 189 LMSAVEDRGVPTKKDFGCGDPH---GVSMFPNTLHEDQVRSDAAREWLLPNY-QRPNLQV 244
Query: 176 LKRSKVTKVIINDQNV---ATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 232
L V KV+++ A GVE+ KG T V A EV+L AG+ + +L SGIG
Sbjct: 245 LTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIG 304
Query: 233 PKAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPL 292
K+ L+ + I DL VG NL+ T SA + Q F G
Sbjct: 305 MKSILEPLGIDTVVDLPVGLNLQDQTTATVRSRITSAGAGQ---GQAAWFATFNETFGDY 361
Query: 293 SNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNK 352
S ++ A H N + + + D+ AY L
Sbjct: 362 SEKAHELLNTKLEQWAEEAVARGGFH------NTTALLIQYENYRDWIVNHNVAYSELFL 415
Query: 353 RTDMGVISMSLVN--PKSCGKVTLKSADP-LAPPCIDTGILSEPEDLATLIRGTDYITRL 409
T GV S + + P + G V + DP L D DL T +
Sbjct: 416 DT-AGVASFDVWDLLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNI 474
Query: 410 EQTEAIR--LAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDP 467
+ A++ AG T+ NL + +WT YI + + VGT M +
Sbjct: 475 SNSGAMQTYFAGETIPGDNLAYDADLS-----AWTEYIPYHFRPNYHGVGTCSM-MPKEM 528
Query: 468 NAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSY 518
VV +V G++GLRV D S+ P + + + Y + K +D + Y
Sbjct: 529 GGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDAILEDY 579
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 121/257 (47%), Gaps = 25/257 (9%)
Query: 36 GKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKSEDYRSVIYNESKA 94
G+ +GGSS + + Y RG D++ + G WG+DE L F ED+
Sbjct: 94 GRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDHPLGGDGIHG- 152
Query: 95 VHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMT---- 150
G LP+ L ++ + + R E A LG P + N E+ G+T
Sbjct: 153 ---KGGPLPIHLPADEVSPLARAFIEAGAS-LGLPRLEGHNS-------GEMIGVTPNSL 201
Query: 151 --RYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVT 208
R G R +AADA+LT R NL +L S+V ++ + V + +E V +G + V
Sbjct: 202 NIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLEGNQVRS-LEVVGRQG-SAEVF 259
Query: 209 ANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL-RVGENLKLNAQFTGPVMAF 267
A+ +++L AGA+ + LL+ SGIGP LD + D+ +G NL+ + G + A
Sbjct: 260 AD-QIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGAGNLYAA 318
Query: 268 SAPL--KRTVYSQEMVF 282
P+ R +S+ M +
Sbjct: 319 RKPVPPSRLQHSESMAY 335
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 444 YIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPN 493
+I T +P GT MG DP+AVV +L++K + L V D S++PN
Sbjct: 452 FIARSVITHHHPCGTCRMGK--DPDAVVDANLRLKALDNLFVVDASIMPN 499
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 158 AADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN--VATGVEYVNSKG--ETVRVTANKEV 213
AAD L G NL V + V K+I ++ ATGV Y +S G V + EV
Sbjct: 196 AADELLN--KGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEV 253
Query: 214 ILTAGAIANAQLLLLSGIGPKAHLDEVKIPV 244
I++AG I QLLLLSG+GP+++L + IPV
Sbjct: 254 IVSAGTIGTPQLLLLSGVGPESYLSSLNIPV 284
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 158 AADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN--VATGVEYVNSKG--ETVRVTANKEV 213
AAD L G NL V + V K+I ++ ATGV Y +S G V + EV
Sbjct: 196 AADELLN--KGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEV 253
Query: 214 ILTAGAIANAQLLLLSGIGPKAHLDEVKIPV 244
I++AG I QLLLLSG+GP+++L + IPV
Sbjct: 254 IVSAGTIGTPQLLLLSGVGPESYLSSLNIPV 284
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 168 GKRTNLYVLKRSKVTKVIINDQN---VATGVEYVNSKG--ETVRVTANKEVILTAGAIAN 222
G NL V + V K+I + + A GV Y +S G V EVI++AG I +
Sbjct: 204 GDPNNLRVAVHASVEKIIFSSNSSGVTAIGVIYKDSNGTPHQAFVRGEGEVIVSAGPIGS 263
Query: 223 AQLLLLSGIGPKAHLDEVKIPV 244
QLLLLSG+GP+++L + IPV
Sbjct: 264 PQLLLLSGVGPESYLSSLNIPV 285
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
Length = 541
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 205 VRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVK 241
+ VT VIL+AGA +++L SGIGP + V+
Sbjct: 240 IPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQ 276
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 205 VRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVK 241
+ VT VIL+AGA +++L SGIGP + V+
Sbjct: 245 IPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQ 281
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,126,959
Number of Sequences: 62578
Number of extensions: 638099
Number of successful extensions: 1888
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1848
Number of HSP's gapped (non-prelim): 31
length of query: 522
length of database: 14,973,337
effective HSP length: 103
effective length of query: 419
effective length of database: 8,527,803
effective search space: 3573149457
effective search space used: 3573149457
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)