BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14407
(522 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura
pseudoobscura GN=Gld PE=3 SV=4
Length = 625
Score = 236 bits (601), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 174/517 (33%), Positives = 264/517 (51%), Gaps = 30/517 (5%)
Query: 8 SEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYN 67
S+ D+ Y EP + A L R GK LGG+S + ++Y RG DY+++A G
Sbjct: 116 SDIDYRYNTEPERMACLSSMEQRCYWPRGKVLGGTSVMNGMMYIRGNREDYDDWAAQGNP 175
Query: 68 GWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELG 127
GW Y + L +F KSED + ++ H G LPVG F N + + +E+G
Sbjct: 176 GWSYQDVLPFFKKSEDNLELDAVGTE-YHAKGGLLPVGKF--PYNPPLSYALLKAGEEMG 232
Query: 128 YPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN 187
+ +D+N + GF R G+R+S+A A+L P A R NL++L + VTKV+I+
Sbjct: 233 FSV-QDLNGQN-STGFMIAQMTARNGIRYSSARAFLRP-ARMRNNLHILLNTTVTKVLIH 289
Query: 188 --DQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI-PV 244
+NV GVE + G ++ KEVI++ GA+ + Q+LLLSG+GPK L +V + PV
Sbjct: 290 PGTKNV-VGVEVSDQFGSMRKILVKKEVIVSGGAVNSPQILLLSGVGPKEDLQKVNVRPV 348
Query: 245 KQDLRVGENLKLN-AQFTGPVM--AFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFT 301
VG+NL + A FT + A +APL +YL+ R G +S G+ T
Sbjct: 349 HHLPGVGKNLHNHVAYFTNFFIDDADTAPLNWAT-----AMEYLLFRDGLMSGTGISDVT 403
Query: 302 GYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISM 361
+ T + RP+L LYF + R + + N R I
Sbjct: 404 AKMAT-RWADRPNLPDLQLYFGG----YLASCARTGQVGELLSN-----NSRAIQ--IFP 451
Query: 362 SLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGT 421
+++NPKS G +TL+SADPL PP I L++ D+ TL+ G + RL QT ++ G
Sbjct: 452 AVLNPKSRGYITLRSADPLDPPRIFANYLTDERDVKTLVEGIKFAIRLSQTSPLKQYGMR 511
Query: 422 LMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIK 481
L ++ C + + S W C +R T ++ G+ MG + DP AVV +L+V G++
Sbjct: 512 LDKTVVKGCESHAFASDAYWECAVRQNTGPENHQAGSCKMGPSHDPMAVVNHELRVHGVR 571
Query: 482 GLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSY 518
GLRV D S++P + A + MI EK A L+K ++
Sbjct: 572 GLRVMDTSIMPKVTAGNTHAPAVMIAEKGAYLLKRAW 608
>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld
PE=3 SV=3
Length = 625
Score = 231 bits (590), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 172/520 (33%), Positives = 266/520 (51%), Gaps = 36/520 (6%)
Query: 8 SEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYN 67
S+ D+ Y EP A L R GK LGG+S + ++Y RG DY+++A G
Sbjct: 116 SDIDYRYNTEPEPMACLSSMEQRCYWPRGKVLGGTSVLNGMMYVRGNREDYDDWAADGNP 175
Query: 68 GWGYDETLKYFVKSEDYRSVIYNE-SKAVHGTQGYLPVGLFKNKENNIIREIFETSAQEL 126
GW Y++ L +F KSED ++ +E H G LPVG F N + + +EL
Sbjct: 176 GWAYNDVLPFFKKSED--NLDLDEVGTEYHAKGGLLPVGKF--PYNPPLSYAILKAGEEL 231
Query: 127 GYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVII 186
G+ D+N + GF R G+R+S+A A+L P A R NL++L + TK++I
Sbjct: 232 GFSV-HDLNGQN-STGFMIAQMTARNGIRYSSARAFLRP-ARMRNNLHILLNTTATKILI 288
Query: 187 --NDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPV 244
+ +NV GVE + G T ++ KEV+L+AGA+ + +LLLSG+GPK L +V +
Sbjct: 289 HPHTKNV-LGVEVSDQFGSTRKILVKKEVVLSAGAVNSPHILLLSGVGPKDELQQVNVRT 347
Query: 245 KQDLR-VGENLKLNAQ-FTGPVM--AFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGLWSF 300
+L VG+NL + FT + A +APL +YL+ R G +S G+
Sbjct: 348 VHNLPGVGKNLHNHVTYFTNFFIDDADTAPLNWAT-----AMEYLLFRDGLMSGTGISDV 402
Query: 301 TGYIDT--LQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGV 358
T + T + RPDL+++ + + R +V N N R+
Sbjct: 403 TAKLATRYADSPERPDLQLYFGGYLASCAR-----------TGQVGELLSN-NSRSIQ-- 448
Query: 359 ISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLA 418
I +++NP+S G + L+SADPL PP I L+ +D+ TL+ G ++ RL QT ++
Sbjct: 449 IFPAVLNPRSRGFIGLRSADPLEPPRIVANYLTHEQDVKTLVEGIKFVIRLSQTTPLKQY 508
Query: 419 GGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVK 478
G L ++ C + + S W C +R T ++ G+ MG + DP AVV +L+V
Sbjct: 509 GMRLDKTVVKGCEAHAFGSDAYWECAVRQNTGPENHQAGSCKMGPSHDPMAVVNHELRVH 568
Query: 479 GIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSY 518
GI+GLRV D S++P + A + MI EK A L+K ++
Sbjct: 569 GIRGLRVMDTSIMPKVSSGNTHAPAVMIAEKGAYLLKRAW 608
>sp|P64264|Y1310_MYCBO Uncharacterized GMC-type oxidoreductase Mb1310 OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb1310 PE=3
SV=1
Length = 528
Score = 197 bits (502), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 178/526 (33%), Positives = 258/526 (49%), Gaps = 61/526 (11%)
Query: 3 SVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFA 62
S L SE D YL EP + I GK LGGSS++ +++ RG + DY+ +A
Sbjct: 52 SKLFRSEIDWDYLTEPQP----ELDGREIYWPRGKVLGGSSSMNAMMWVRGFASDYDEWA 107
Query: 63 KLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETS 122
W Y + L YF + E+ + + S G G P+ + + + + + +
Sbjct: 108 ARAGPRWSYADVLGYFRRIENVTAAWHFVSGDDSGVTG--PLHISRQRSPRSVTAAWLAA 165
Query: 123 AQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 182
A+E G+ + + R GF E R G RFS ADAYL P A +R NL VL + T
Sbjct: 166 ARECGFAAARPNSPR--PEGFCETVVTQRRGARFSTADAYLKP-AMRRKNLRVLTGATAT 222
Query: 183 KVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI 242
+V+I D + A GVEY S G+T V A +EV+L AGA+ + QLL+LSGIG + HL E I
Sbjct: 223 RVVI-DGDRAVGVEY-QSDGQTRIVYARREVVLCAGAVNSPQLLMLSGIGDRDHLAEHDI 280
Query: 243 -PVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQE---MVFKYLVNRIGPL-SNAGL 297
V VG NL L+ T V+ F K ++++ E + YL+ R G L SN G
Sbjct: 281 DTVYHAPEVGCNL-LDHLVT--VLGFDVE-KDSLFAAEKPGQLISYLLRRRGMLTSNVG- 335
Query: 298 WSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMG 357
G++ + PDLE+ I F DE L G
Sbjct: 336 -EAYGFVRSRPELKLPDLEL---------------IFAPAPFYDEA------LVPPAGHG 373
Query: 358 VI-SMSLVNPKSCGKVTLKSADPLAPPCIDTGILSE--PEDLATLIRGTDYITRLEQTEA 414
V+ LV P+S G++TL+SADP A P I+ LS+ D A ++ G R+ Q
Sbjct: 374 VVFGPILVAPQSRGQITLRSADPHAKPVIEPRYLSDLGGVDRAAMMAGLRICARIAQARP 433
Query: 415 IRLAGGTLM----SLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAV 470
+R G++ S L+ + +T S T Y +P+GT MG+ D +V
Sbjct: 434 LRDLLGSIARPRNSTELDEATLELALATCSHTLY---------HPMGTCRMGS--DEASV 482
Query: 471 VTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKT 516
V P L+V+G+ GLRVAD SV+P+ + + A S +IGEK ADL+++
Sbjct: 483 VDPQLRVRGVDGLRVADASVMPSTVRGHTHAPSVLIGEKAADLIRS 528
>sp|P64263|Y1279_MYCTU Uncharacterized GMC-type oxidoreductase Rv1279/MT1316
OS=Mycobacterium tuberculosis GN=Rv1279 PE=3 SV=1
Length = 528
Score = 197 bits (502), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 178/526 (33%), Positives = 258/526 (49%), Gaps = 61/526 (11%)
Query: 3 SVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFA 62
S L SE D YL EP + I GK LGGSS++ +++ RG + DY+ +A
Sbjct: 52 SKLFRSEIDWDYLTEPQP----ELDGREIYWPRGKVLGGSSSMNAMMWVRGFASDYDEWA 107
Query: 63 KLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETS 122
W Y + L YF + E+ + + S G G P+ + + + + + +
Sbjct: 108 ARAGPRWSYADVLGYFRRIENVTAAWHFVSGDDSGVTG--PLHISRQRSPRSVTAAWLAA 165
Query: 123 AQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 182
A+E G+ + + R GF E R G RFS ADAYL P A +R NL VL + T
Sbjct: 166 ARECGFAAARPNSPR--PEGFCETVVTQRRGARFSTADAYLKP-AMRRKNLRVLTGATAT 222
Query: 183 KVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI 242
+V+I D + A GVEY S G+T V A +EV+L AGA+ + QLL+LSGIG + HL E I
Sbjct: 223 RVVI-DGDRAVGVEY-QSDGQTRIVYARREVVLCAGAVNSPQLLMLSGIGDRDHLAEHDI 280
Query: 243 -PVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQE---MVFKYLVNRIGPL-SNAGL 297
V VG NL L+ T V+ F K ++++ E + YL+ R G L SN G
Sbjct: 281 DTVYHAPEVGCNL-LDHLVT--VLGFDVE-KDSLFAAEKPGQLISYLLRRRGMLTSNVG- 335
Query: 298 WSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMG 357
G++ + PDLE+ I F DE L G
Sbjct: 336 -EAYGFVRSRPELKLPDLEL---------------IFAPAPFYDEA------LVPPAGHG 373
Query: 358 VI-SMSLVNPKSCGKVTLKSADPLAPPCIDTGILSE--PEDLATLIRGTDYITRLEQTEA 414
V+ LV P+S G++TL+SADP A P I+ LS+ D A ++ G R+ Q
Sbjct: 374 VVFGPILVAPQSRGQITLRSADPHAKPVIEPRYLSDLGGVDRAAMMAGLRICARIAQARP 433
Query: 415 IRLAGGTLM----SLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAV 470
+R G++ S L+ + +T S T Y +P+GT MG+ D +V
Sbjct: 434 LRDLLGSIARPRNSTELDEATLELALATCSHTLY---------HPMGTCRMGS--DEASV 482
Query: 471 VTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKT 516
V P L+V+G+ GLRVAD SV+P+ + + A S +IGEK ADL+++
Sbjct: 483 VDPQLRVRGVDGLRVADASVMPSTVRGHTHAPSVLIGEKAADLIRS 528
>sp|A6U6Y8|BETA_SINMW Choline dehydrogenase OS=Sinorhizobium medicae (strain WSM419)
GN=betA PE=3 SV=1
Length = 549
Score = 196 bits (497), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 157/520 (30%), Positives = 249/520 (47%), Gaps = 57/520 (10%)
Query: 5 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 64
+S++ ++ YL+EP + N RI GK +GGSS++ ++Y RG S D++ + +L
Sbjct: 53 MSMNRYNWGYLSEPEP----NLNNRRITAPRGKVIGGSSSINGMVYVRGHSEDFDRWEEL 108
Query: 65 GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQ 124
G GW Y + L Y+ + E + + GT G P+ + + N + F + +
Sbjct: 109 GAKGWAYADVLPYYKRMEHS----HGGEEGWRGTDG--PLHVQRGPVKNPLFHAFIEAGK 162
Query: 125 ELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKV 184
+ G+ +D N + GF + T G R+SAA AYL P A KR N+ ++ R K+
Sbjct: 163 QAGFEVTEDYNGSKQE-GFGLMEQTTWRGRRWSAASAYLRP-ALKRPNVELV-RCFARKI 219
Query: 185 IINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPV 244
+I + ATGVE + G T V AN+EVI++A + + +LL+LSGIGP AHL E+ I V
Sbjct: 220 VI-ENGRATGVE-IERGGRTEVVRANREVIVSASSFNSPKLLMLSGIGPAAHLQEMGIDV 277
Query: 245 KQDLR-VGENLKLNAQF------TGPVMAFSA-P--LKRTVYSQEMVFKYLVNRIGPLSN 294
K D VG+NL+ + +F T PV +S P + +Q + FK + +SN
Sbjct: 278 KADRPGVGQNLQDHMEFYFQQVSTKPVSLYSWLPWFWQGVAGAQWLFFKRGLG----ISN 333
Query: 295 AGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRT 354
+ ++ + +PD++ H L + +YD ++ ++
Sbjct: 334 Q--FESCAFLRSAPGVKQPDIQYHFL-----------PVAISYDGKAAAKSHGFQVHVGY 380
Query: 355 DMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEA 414
++ KS G VTL+S+DP A P I +S PED + +A
Sbjct: 381 NLS---------KSRGDVTLRSSDPKADPVIRFNYMSHPEDWEKFRHCVRLTREIFGQKA 431
Query: 415 IRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPD 474
L G + + R+ ++R + +P GT MG DDP AVV P+
Sbjct: 432 FDLYRGPEIQPGEKV------RTDEEIDAFLREHLESAYHPCGTCKMGAKDDPMAVVDPE 485
Query: 475 LKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLV 514
+V G+ GLRVAD S+ P+ +A S M GEK AD +
Sbjct: 486 TRVIGVDGLRVADSSIFPHITYGNLNAPSIMTGEKAADHI 525
>sp|P54223|BETA_RHIME Choline dehydrogenase OS=Rhizobium meliloti (strain 1021) GN=betA
PE=3 SV=2
Length = 549
Score = 190 bits (482), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 155/520 (29%), Positives = 247/520 (47%), Gaps = 57/520 (10%)
Query: 5 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 64
+S++ ++ YL+EP + N RI GK +GGSS++ ++Y RG S D+ + +L
Sbjct: 53 MSMNRYNWGYLSEPEP----NLNNRRITAPRGKVIGGSSSINGMVYVRGHSEDFNRWEEL 108
Query: 65 GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQ 124
G GW Y + L Y+ + E + + GT G P+ + + N + F + +
Sbjct: 109 GAQGWAYADVLPYYKRMEHS----HGGEEGWRGTDG--PLHVQRGPVKNPLFHAFIEAGK 162
Query: 125 ELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKV 184
E G+ +D N + GF + T G R+SAA AYL P A KR N+ ++ R K+
Sbjct: 163 EAGFEVTEDYNGSKQE-GFGLMEQTTWRGRRWSAASAYLRP-ALKRPNVELI-RCFARKI 219
Query: 185 IINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPV 244
+I + ATGVE + G V AN+EVI++A + + +LL+LSGIGP AHL E+ I V
Sbjct: 220 VI-ENGRATGVE-IERGGRIEVVKANREVIVSASSFNSPKLLMLSGIGPAAHLKEMGIDV 277
Query: 245 KQDLR-VGENLKLNAQF------TGPVMAFSA-P--LKRTVYSQEMVFKYLVNRIGPLSN 294
K D VG+NL+ + +F T PV +S P + +Q + FK + +SN
Sbjct: 278 KVDRPGVGQNLQDHMEFYFQQVSTKPVSLYSWLPWFWQGVAGAQWLFFKRGLG----ISN 333
Query: 295 AGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRT 354
+ ++ + +PD++ H L + +YD ++ ++
Sbjct: 334 Q--FESCAFLRSAPGVKQPDIQYHFL-----------PVAISYDGKAAAKSHGFQVHVGY 380
Query: 355 DMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEA 414
++ KS G V+L+S+DP A P I +S PED + +A
Sbjct: 381 NLS---------KSRGNVSLRSSDPKADPVIRFNYMSHPEDWEKFRHCVRLTREIFGQKA 431
Query: 415 IRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPD 474
L G + + ++ ++R + +P GT MG DDP AVV P+
Sbjct: 432 FDLYRGPEIQPGEKV------QTDEEIDGFLREHLESAYHPCGTCKMGAKDDPMAVVDPE 485
Query: 475 LKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLV 514
+V G+ GLRVAD S+ P+ +A S M GEK AD +
Sbjct: 486 TRVIGVDGLRVADSSIFPHITYGNLNAPSIMTGEKSADHI 525
>sp|C3MIE4|BETA_RHISN Choline dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betA PE=3
SV=1
Length = 549
Score = 189 bits (481), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 157/527 (29%), Positives = 247/527 (46%), Gaps = 71/527 (13%)
Query: 5 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 64
+S++ ++ YL+EP + N RI GK +GGSS++ ++Y RG + D++ + +L
Sbjct: 53 MSMNRYNWGYLSEPEPH----LNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFDRWEQL 108
Query: 65 GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQ 124
G GW Y + L YF + E + GT G P+ + + N + F + +
Sbjct: 109 GAKGWAYADVLPYFKRMEHS----HGGEDGWRGTDG--PLHVQRGPVKNPLFHAFVEAGK 162
Query: 125 ELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKV 184
+ G+ D N + GF + T G R+SAA AYL P A KR N+ ++ R K+
Sbjct: 163 QAGFEMTDDYNGSKQE-GFGLMEQTTWRGRRWSAASAYLKP-ALKRPNVQLI-RCFARKI 219
Query: 185 IINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPV 244
+I + ATGVE + G V AN+EVI++A + + +LL+LSGIGP AHL ++ I V
Sbjct: 220 VI-ENGRATGVE-IERGGRIEVVKANREVIVSASSFNSPKLLMLSGIGPAAHLKDLGIDV 277
Query: 245 KQDLR-VGENLKLNAQF------TGPVMAFSA-P--LKRTVYSQEMVFKYLVNRIGPLSN 294
K D VG+NL+ + +F T PV +S P + +Q + FK + +SN
Sbjct: 278 KVDRPGVGQNLQDHMEFYFQQISTKPVSLYSWLPWFWQGVAGAQWLFFKSGLG----ISN 333
Query: 295 AGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRT 354
+ ++ + +PD++ H L + YD T ++
Sbjct: 334 Q--FEACAFLRSAPGVKQPDIQYHFL-----------PVAIRYDGKAAANTHGFQVHVGY 380
Query: 355 DMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITR------ 408
++ KS G VTL+++DP A P I +S PED R +TR
Sbjct: 381 NLS---------KSRGSVTLRASDPKADPVIRFNYMSHPEDWEKF-RHCVRLTREIFGQK 430
Query: 409 -LEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDP 467
+Q + G + + E ++R + +P GT MG+ DDP
Sbjct: 431 AFDQYRGPEIQPGERVQTDEEI------------DAFLREHLESAYHPCGTCKMGSKDDP 478
Query: 468 NAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLV 514
AVV P+ +V G+ GLRVAD S+ P+ +A S M GEK AD +
Sbjct: 479 MAVVDPETRVIGVDGLRVADSSIFPHVTYGNLNAPSIMTGEKAADHI 525
>sp|B9JBA2|BETA_AGRRK Choline dehydrogenase OS=Agrobacterium radiobacter (strain K84 /
ATCC BAA-868) GN=betA PE=3 SV=1
Length = 549
Score = 187 bits (475), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 157/524 (29%), Positives = 243/524 (46%), Gaps = 65/524 (12%)
Query: 5 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 64
+S+ ++ YL+EP + N RI GK +GGSS++ ++Y RG + D+ + +L
Sbjct: 53 MSMDRYNWGYLSEPEP----QLNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEEL 108
Query: 65 GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQ 124
G GW Y + L YF + E + + GT G P+ + + N + F + +
Sbjct: 109 GAQGWAYADVLPYFKRMEHS----HGGEEGWRGTDG--PLHVRRGDARNPLFHAFIEAGK 162
Query: 125 ELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKV 184
+ G+ +D N + GF + T G R+SAA AYL P A KR N+ ++ R KV
Sbjct: 163 QAGFEATEDYNGGKQE-GFGLMEQTTWMGRRWSAATAYLKP-ALKRPNVELI-RCFARKV 219
Query: 185 IINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPV 244
+I + ATGVE + G+ V AN EVI++A + + +LL+LSGIGP HL E+ I V
Sbjct: 220 VI-ENGRATGVE-IERGGKIEIVKANSEVIVSASSFNSPKLLMLSGIGPGQHLQEMGIEV 277
Query: 245 KQDLR-VGENLKLNAQF------TGPVMAFSA-P--LKRTVYSQEMVFKYLVNRIGPLSN 294
K D VG NL+ + +F PV +S P ++ V +Q M FK L
Sbjct: 278 KIDRPGVGANLQDHMEFYFQQTSLKPVSLYSWLPWYMQGIVGAQWMFFK------SGLGT 331
Query: 295 AGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQT----AYVNL 350
+ + ++ + +PD++ H L + +YD ++ A+V
Sbjct: 332 SNQFEACAFLRSAPGVKQPDIQYHFL-----------PVAISYDGKAAAKSHGFQAHVGY 380
Query: 351 NKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLE 410
N KS G VTL+S+DP A P I +S PED +
Sbjct: 381 NLS-------------KSRGAVTLRSSDPKADPVIRFNYMSHPEDWEKFRHCVRLTREIF 427
Query: 411 QTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAV 470
+A G + + ++ ++R + +P GT MG+ DDP AV
Sbjct: 428 GQKAFDDYRGPEIQPGPDV------QTDDQIDAFLREHLESAYHPCGTCKMGSKDDPMAV 481
Query: 471 VTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLV 514
V PD +V G++GLRVAD S+ P+ + S M GEK AD +
Sbjct: 482 VDPDTRVIGVEGLRVADSSIFPSLTYGNLNGPSIMTGEKAADHI 525
>sp|Q47944|SDH_GLUOY L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans PE=3 SV=1
Length = 531
Score = 186 bits (471), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 158/523 (30%), Positives = 245/523 (46%), Gaps = 80/523 (15%)
Query: 15 LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDET 74
L EP + A N +I G+ LGG S++ ++ RG D++ +A G +GW + +
Sbjct: 64 LTEPQKHA----NNRQIPYVQGRILGGGSSINAEVFTRGHPSDFDRWAAEGADGWSFRDV 119
Query: 75 LKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDM 134
KYF++SE + ++ S HGT G P+G+ E N F S QE+G P D
Sbjct: 120 QKYFIRSEG--NAVF--SGTWHGTNG--PLGVSNLAEPNPTSRAFVQSCQEMGLPYNPDF 173
Query: 135 NDRYVD-VGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVAT 193
N + G ++ R R S A YL P G R NL V+ R+ V K++ N AT
Sbjct: 174 NGASQEGAGIYQM--TIRNNRRCSTAVGYLRPALG-RKNLTVVTRALVLKIVFNGTR-AT 229
Query: 194 GVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGE 252
GV+Y+ + G A++E+++TAGAI +L++LSG+GP AHL E IPV QDL VGE
Sbjct: 230 GVQYI-ANGTLNTAEASQEIVVTAGAIGTPKLMMLSGVGPAAHLRENGIPVVQDLPGVGE 288
Query: 253 NLKLNAQFTGPVMA-------FSAPLKRTVYSQEMVFKYLVNRIGPLSN-----AGLWSF 300
NL+ F ++A F ++ + +Y + R GP+++ W
Sbjct: 289 NLQ--DHFGVDIVAELKTDESFDK-YRKLHWMLWAGLEYTMFRSGPVASNVVEGGAFW-- 343
Query: 301 TGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVIS 360
Y D ++ PDL+ H L + ++ K ++
Sbjct: 344 --YSDP--SSGVPDLQFHFLA------------------EAGAEAGVTSVPKGASGITLN 381
Query: 361 MSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGG 420
++ PKS G V L+SADP P +D L +P DL T E +RL+
Sbjct: 382 SYVLRPKSRGTVRLRSADPRVNPMVDPNFLGDPADLET------------SAEGVRLSYE 429
Query: 421 TLMSLNLE-----AC---SQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVT 472
+LE C + P + + Y R T+ +P T MG D +VV
Sbjct: 430 MFSQPSLEKHIRKTCFFSGKQP--TMQMYRDYAREHGRTSYHPTCTCKMGRDD--MSVVD 485
Query: 473 PDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVK 515
P LKV G++G+R+ D SV+P+ + + ++A + MI E+ AD ++
Sbjct: 486 PRLKVHGLEGIRICDSSVMPSLLGSNTNAATIMISERAADFIQ 528
>sp|Q8UH55|BETA_AGRT5 Choline dehydrogenase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=betA PE=3 SV=2
Length = 549
Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 158/531 (29%), Positives = 245/531 (46%), Gaps = 65/531 (12%)
Query: 5 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 64
+S+ ++ YL+EP + N RI GK +GGSS++ ++Y RG + D+ + +L
Sbjct: 53 MSMKRYNWGYLSEPEP----NLDNRRITAPRGKVIGGSSSINGLVYVRGHAEDFNRWEEL 108
Query: 65 GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQ 124
G GW Y + L YF + E + + GT G P+ + + +N + F +
Sbjct: 109 GAQGWAYADVLPYFKRMEHS----HGGEEGWRGTDG--PLHVQRGPVSNPLFHAFIQAGA 162
Query: 125 ELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKV 184
+ G+ D N + GF + G R+SAA+AYL P A KR N+ L KV
Sbjct: 163 QAGFELTDDYNGSKQE-GFGLMEQTIHNGRRWSAANAYLKP-ALKRGNV-TLVNGFARKV 219
Query: 185 IINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPV 244
II + A GVE + +G V AN+EVI++A + + +LL+LSGIGP AHL ++ I V
Sbjct: 220 II-ENGRAVGVE-IERRGRVETVKANREVIVSASSFNSPKLLMLSGIGPAAHLKDMGIEV 277
Query: 245 KQDLR-VGENLKLNAQF------TGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGL 297
K D VG NL+ + +F T PV +S + ++L+++ G L +
Sbjct: 278 KADRPGVGANLQDHMEFYFQQVSTKPVSLYS--WLPWFWQGVAGAQWLLSK-GGLGASNQ 334
Query: 298 WSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQT----AYVNLNKR 353
+ ++ + +PD++ H L + +YD ++ A+V N
Sbjct: 335 FEACAFLRSAPGLKQPDIQYHFL-----------PVAISYDGKAAAKSHGFQAHVGYNLS 383
Query: 354 TDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITR--LEQ 411
KS G VTL+SADP P I +S PED R +TR Q
Sbjct: 384 -------------KSRGNVTLRSADPHDDPVIRFNYMSHPEDWEKF-RHCVRLTREIFGQ 429
Query: 412 TEAIRLAGGTLM-SLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAV 470
G + N+E Q ++R + +P GT MG+ +DP AV
Sbjct: 430 KAFDDFRGPEIQPGENIETDEQI--------DAFLREHLESAYHPCGTCRMGDRNDPMAV 481
Query: 471 VTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSYNIP 521
V P+ +V G++GLRVAD S+ P+ + S M GEK AD + +P
Sbjct: 482 VDPECRVIGVEGLRVADSSIFPHVTYGNLNGPSIMTGEKAADHILGKTPLP 532
>sp|Q2KB43|BETA_RHIEC Choline dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC
51251) GN=betA PE=3 SV=1
Length = 549
Score = 182 bits (463), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 151/520 (29%), Positives = 243/520 (46%), Gaps = 57/520 (10%)
Query: 5 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 64
+S+ ++ YL+EP + N RI GK +GGSS++ ++Y RG + D+ + +L
Sbjct: 53 MSMKRYNWGYLSEPEP----NLNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEEL 108
Query: 65 GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQ 124
G +GW Y + L YF + E + + GT G P+ + + N + F + +
Sbjct: 109 GASGWAYADVLPYFKRMEHS----HGGEEGWRGTDG--PLHVQRGGFTNPLFRAFIEAGK 162
Query: 125 ELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKV 184
+ G+ +D N + GF + G R+SAA+AYL P A KR N+ ++ + +
Sbjct: 163 QAGFETTEDYNGSKQE-GFGLMEQTIFAGRRWSAANAYLKP-ALKRDNVGIV--YGLARR 218
Query: 185 IINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPV 244
I+ + ATGVE + G T V AN+EVI++A + + +LL+LSGIGP HL E+ I V
Sbjct: 219 IVIENGRATGVE-IERGGRTEVVKANREVIVSASSFNSPKLLMLSGIGPAKHLKEMGIEV 277
Query: 245 KQDL-RVGENLKLNAQF------TGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGL 297
K D VG NL+ + +F T PV +S + ++L+++ G L +
Sbjct: 278 KADRPGVGANLQDHMEFYFQQVSTKPVSLYS--WLPWFWQGVAGAQWLLSK-GGLGASNQ 334
Query: 298 WSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMG 357
+ ++ + +PD++ H L + +YD ++ ++ ++
Sbjct: 335 FEACAFLRSAPGLKQPDIQYHFL-----------PVAISYDGKAAAKSHGFQVHVGYNLS 383
Query: 358 VISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATL---IRGTDYITRLEQTEA 414
KS G VTL+S DP A P + +S PED +R T I + +A
Sbjct: 384 ---------KSRGSVTLRSPDPKADPVLRFNYMSHPEDWEKFRHCVRLTREIFGQKAFDA 434
Query: 415 IRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPD 474
R E +S ++R + +P GT MG DDP AVV P
Sbjct: 435 YR---------GPEIQPGEGVQSDEQIDSFLREHLESAYHPCGTCKMGAKDDPMAVVDPQ 485
Query: 475 LKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLV 514
+V G+ GLRVAD S+ P+ + S M GEK AD +
Sbjct: 486 TRVIGVDGLRVADSSIFPHVTYGNLNGPSIMTGEKAADHI 525
>sp|Q8NE62|CHDH_HUMAN Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=2
SV=2
Length = 594
Score = 181 bits (459), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 151/492 (30%), Positives = 229/492 (46%), Gaps = 56/492 (11%)
Query: 36 GKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAV 95
G+ GGSS++ ++Y RG + DYE + + G GW Y L YF K++ + +
Sbjct: 125 GRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQGHEL----GASRY 180
Query: 96 HGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLR 155
G G P+ + + K N+ + F + Q+ GYP +DMN + GF + G R
Sbjct: 181 RGADG--PLRVSRGKTNHPLHCAFLEATQQAGYPLTEDMNG-FQQEGFGWMDMTIHEGKR 237
Query: 156 FSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVIL 215
+SAA AYL P A RTNL + V++V+ A GVEYV + G++ R A+KEVIL
Sbjct: 238 WSAACAYLHP-ALSRTNLKAEAETLVSRVLFEGTR-AVGVEYVKN-GQSHRAYASKEVIL 294
Query: 216 TAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGENLK------LNAQFTGPVMAFS 268
+ GAI + QLL+LSGIG L ++ IPV L VG+NL+ + T P+ S
Sbjct: 295 SGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQQACTRPITLHS 354
Query: 269 A--PLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQND 326
A PL++ E ++K+ G + A L G+I + PD++ H L Q D
Sbjct: 355 AQKPLRKVCIGLEWLWKF----TGEGATAHL-ETGGFIRSQPGVPHPDIQFHFLPSQVID 409
Query: 327 IRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCID 386
+ + AY + + + S G + L+SA+P P I
Sbjct: 410 HGRVPTQQEAYQ--------------------VHVGPMRGTSVGWLKLRSANPQDHPVIQ 449
Query: 387 TGILS---EPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTC 443
LS + ED ++ T I E R L+ S +S
Sbjct: 450 PNYLSTETDIEDFRLCVKLTREIFAQEALAPFR-------GKELQPGSHI--QSDKEIDA 500
Query: 444 YIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAIS 503
++R + +P T MG DP AVV P +V G++ LRV D S++P+ + +A +
Sbjct: 501 FVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVSGNLNAPT 560
Query: 504 YMIGEKCADLVK 515
MI EK AD++K
Sbjct: 561 IMIAEKAADIIK 572
>sp|Q1MJU4|BETA_RHIL3 Choline dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain
3841) GN=betA PE=3 SV=1
Length = 549
Score = 179 bits (454), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 148/517 (28%), Positives = 242/517 (46%), Gaps = 51/517 (9%)
Query: 5 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 64
+S+ ++ YL+EP + N RI GK +GGSS++ ++Y RG + D+ + +L
Sbjct: 53 MSMKRYNWGYLSEPE----ANLNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEEL 108
Query: 65 GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQ 124
G +GW Y + L YF + E + + GT G P+ + + N + + F + +
Sbjct: 109 GASGWAYADVLPYFKRMEHS----HGGEEGWRGTDG--PLHVQRGGFTNPLFQAFVEAGK 162
Query: 125 ELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKV 184
+ G+ +D N + GF + G R+SAA+AYL P A KR N+ ++ ++
Sbjct: 163 QAGFETTEDYNGSKQE-GFGLMEQTIFGGRRWSAANAYLKP-ALKRDNVKIVY-GLAQRI 219
Query: 185 IINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPV 244
+I D ATGVE + G V AN+EVI++A + + +LL+LSGIGP HL ++ I V
Sbjct: 220 VIEDGR-ATGVE-IERNGRIEVVKANREVIVSASSFNSPKLLMLSGIGPGQHLQDMGIAV 277
Query: 245 KQDL-RVGENLKLNAQF------TGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGL 297
K D VG NL+ + +F T PV +S + ++L++R G L +
Sbjct: 278 KADRPGVGANLQDHMEFYFQQVSTKPVSLYS--WLPWFWQGVAGAQWLLSR-GGLGASNQ 334
Query: 298 WSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMG 357
+ ++ + +PD++ H L + +YD ++ ++ ++
Sbjct: 335 FEACAFLRSAPGLKQPDIQYHFL-----------PVAISYDGKAAAKSHGFQVHVGYNLS 383
Query: 358 VISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRL 417
KS G V+L+SADP A P + +S ED + RL + +
Sbjct: 384 ---------KSRGSVSLRSADPKADPVLRFNYMSHAEDWEKF----RHCVRLTREIFGQS 430
Query: 418 AGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKV 477
A ++ +S ++R + +P GT MG DDP AVV P +V
Sbjct: 431 AFHDYRGPEIQPGEGV--QSDEEIDAFLREHLESAYHPCGTCRMGAKDDPMAVVDPQTRV 488
Query: 478 KGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLV 514
GI GLRVAD S+ P+ + S M GEK AD +
Sbjct: 489 IGIDGLRVADSSIFPHVTYGNLNGPSIMTGEKAADHI 525
>sp|B3PTE0|BETA_RHIE6 Choline dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=betA
PE=3 SV=1
Length = 549
Score = 178 bits (452), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 150/520 (28%), Positives = 242/520 (46%), Gaps = 57/520 (10%)
Query: 5 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 64
+S+ ++ YL+EP + N RI GK +GGSS++ ++Y RG + D+ + +L
Sbjct: 53 MSMKRYNWGYLSEPEP----NLNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEEL 108
Query: 65 GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQ 124
G +GW Y + L YF + E + + GT G P+ + + N + F + +
Sbjct: 109 GASGWAYADVLPYFKRMEHS----HGGEEGWRGTDG--PLHVQRGGFTNPLFRAFIEAGK 162
Query: 125 ELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTN---LYVLKRSKV 181
+ G+ D N + GF + G R+SAA+AYL P A KR N +Y L R
Sbjct: 163 QAGFETTDDYNGSKQE-GFGLMEQTIFSGRRWSAANAYLKP-ALKRKNVGMVYGLAR--- 217
Query: 182 TKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVK 241
K++I D ATGVE + G+ V A +EVI++A + + +LL+LSGIGP HL+++
Sbjct: 218 -KIVIEDGR-ATGVE-IERGGKVEVVKATREVIVSASSFNSPKLLMLSGIGPGQHLNDMG 274
Query: 242 IPVKQDL-RVGENLKLNAQF------TGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSN 294
I VK D VG NL+ + +F T PV +S + ++L+++ G L
Sbjct: 275 IAVKADRPGVGANLQDHMEFYFQQVSTKPVSLYS--WLPWFWQGVAGAQWLLSK-GGLGA 331
Query: 295 AGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRT 354
+ + ++ + +PD++ H L + +YD ++ ++
Sbjct: 332 SNQFEACAFLRSAPGLKQPDIQYHFL-----------PVAISYDGKAAAKSHGFQVHVGY 380
Query: 355 DMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEA 414
++ KS G VTL+S DP A P + +S PED + RL +
Sbjct: 381 NLS---------KSRGSVTLRSPDPKAEPVLRFNYMSHPEDWEKF----RHCVRLTREIF 427
Query: 415 IRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPD 474
+ A ++ +S ++R + +P GT MG DDP AVV P
Sbjct: 428 GQTAFDAYRGPEIQPGEGV--QSDEQIDAFLREHLESAYHPCGTCKMGAKDDPMAVVDPQ 485
Query: 475 LKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLV 514
+V G+ GLRVAD S+ P+ + S M GEK AD +
Sbjct: 486 TRVIGVDGLRVADSSIFPHVTYGNLNGPSIMTGEKAADHI 525
>sp|B5ZUG2|BETA_RHILW Choline dehydrogenase OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=betA PE=3 SV=1
Length = 549
Score = 177 bits (448), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 146/517 (28%), Positives = 240/517 (46%), Gaps = 51/517 (9%)
Query: 5 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 64
+S+ ++ YL+EP + N RI GK +GGSS++ ++Y RG + D+ + +L
Sbjct: 53 MSMKRYNWGYLSEPEP----NLNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEEL 108
Query: 65 GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQ 124
G GW Y + L YF + E + + GT G P+ + + N + F + +
Sbjct: 109 GAGGWAYADVLPYFKRMEHS----HGGEEGWRGTDG--PLHVQRGGFTNPLFRAFVEAGK 162
Query: 125 ELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKV 184
+ G+ +D N + GF + G R+SAA+AYL P A KR N+ ++ ++
Sbjct: 163 QAGFETTEDYNGSKQE-GFGLMEQTIFSGRRWSAANAYLKP-ALKRKNVEIIY-GFAQRI 219
Query: 185 IINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPV 244
+I D ATGVE + G+ V AN+EVI++A + + +LL+LSGIGP HL E+ I V
Sbjct: 220 VIEDGR-ATGVE-IERGGKIEVVKANREVIVSASSFNSPKLLMLSGIGPGEHLKEMGIEV 277
Query: 245 KQDL-RVGENLKLNAQF------TGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGL 297
K D VG NL+ + +F T PV +S + ++L+++ G L +
Sbjct: 278 KADRPGVGANLQDHMEFYFQQVSTKPVSLYS--WLPWFWQGVAGAQWLLSK-GGLGASNQ 334
Query: 298 WSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMG 357
+ ++ + +PD++ H L + +YD ++ ++ ++
Sbjct: 335 FEACAFLRSAPGLKQPDIQYHFL-----------PVAISYDGKAAAKSHGFQVHVGYNLS 383
Query: 358 VISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRL 417
KS G VTL+S DP A P + +S ED + RL + +
Sbjct: 384 ---------KSRGSVTLRSPDPKADPVLRFNYMSHAEDWEKF----RHCVRLTRELFGQA 430
Query: 418 AGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKV 477
A ++ +S ++R + +P GT MG DDP AVV P +V
Sbjct: 431 AFDDYRGAEIQPGESV--QSDEEIDAFLREHLESAYHPCGTCKMGAKDDPMAVVDPQTRV 488
Query: 478 KGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLV 514
G++ LRVAD S+ P+ + S M GEK AD +
Sbjct: 489 IGVEALRVADSSIFPHVTYGNLNGPSIMTGEKAADHI 525
>sp|Q9WWW2|ALKJ_PSEPU Alcohol dehydrogenase [acceptor] OS=Pseudomonas putida GN=alkJ PE=3
SV=1
Length = 552
Score = 176 bits (446), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 149/491 (30%), Positives = 233/491 (47%), Gaps = 54/491 (10%)
Query: 36 GKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAV 95
GK LGGSS++ ++Y RG DY+ + + G WG+ F K E + +
Sbjct: 79 GKTLGGSSSINAMVYIRGHEEDYQAWEQAGGEYWGWKRAFALFKKLEHNQRF---DKSNY 135
Query: 96 HGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVD-VGFAELPGMTRYGL 154
HGT G L V K+ N + + F + E D N + + VGF ++ ++G
Sbjct: 136 HGTDGELAVSDLKDL--NPLSKSFVQAGMEAKISFNGDFNGAHQEGVGFYQV--TQKHGQ 191
Query: 155 RFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSK-GETVRVTANKEV 213
R+S+A A+L + R NL ++ + TKV+ D+ A GV Y+ + V+ T + EV
Sbjct: 192 RWSSARAFLHDVI-DRPNLDIITEAHATKVLFEDRK-AVGVSYIQKNMHQQVKTTDSGEV 249
Query: 214 ILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL-RVGENLKLNAQFT--------GPV 264
IL+ GA+ QLL+LSG+G A L E I + DL VG+NL+ + T P+
Sbjct: 250 ILSLGAVNTPQLLMLSGVGAAAELKEHGIALVHDLPEVGKNLQDHLDITLMCAANSRTPI 309
Query: 265 -MAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQ 323
+AFS + V +F Y+ R G L+ + + G++ + RP+L+ H L
Sbjct: 310 GVAFSFIPRGLV----GLFSYIFKRKGFLT-SNVAESGGFVKSSPERDRPNLQFHFLPTY 364
Query: 324 QNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPP 383
D + KI Y + + + + PKS G++ LKSA+P+ P
Sbjct: 365 LKD--HGRKIAVGYGY------------------TLHICDLLPKSRGRIGLKSANPMDDP 404
Query: 384 CIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTC 443
ID LS+PED+ T+I G ++ AI A E S
Sbjct: 405 LIDPNYLSDPEDIKTMIAG------IKIGRAIFDAPSMAKHFKREIVPGPAVTSDDEIVA 458
Query: 444 YIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAIS 503
IR T +PVGT MG DP +VV P L+V+G++ +RV D S++PN + ++A +
Sbjct: 459 DIRSRAETIYHPVGTCRMGK--DPASVVDPCLQVRGLRNIRVVDASIMPNLVAGNTNAPT 516
Query: 504 YMIGEKCADLV 514
MI E A+++
Sbjct: 517 IMIAENAAEII 527
>sp|Q1QXE1|BETA1_CHRSD Choline dehydrogenase OS=Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB 13768) GN=betA PE=3 SV=1
Length = 560
Score = 172 bits (437), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 169/530 (31%), Positives = 245/530 (46%), Gaps = 59/530 (11%)
Query: 5 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 64
L ++ A+ +P + + N R++ GKGLGGSS + + Y RG + DY+N+AK+
Sbjct: 59 LQGKRYNWAFETDPEPY----MNNRRMECGRGKGLGGSSLINGMCYLRGNALDYDNWAKI 114
Query: 65 -GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKE-NNIIREIFETS 122
G W Y + L YF ++E R + N+ HG G PV + KE NN + F +
Sbjct: 115 PGLEDWNYLQCLPYFKRAET-RDIGPND---YHGGDG--PVSVATPKEGNNELYGAFIRA 168
Query: 123 AQELGYPCPKDMNDRYVDVGFAELPGMTR-YGLRFSAADAYLTPIAGKRTNLYVLKRSKV 181
E GYP +D+N Y GF + T G R S A YL IA +R NL ++
Sbjct: 169 GIEAGYPATEDVNG-YQQEGFGPMDRTTTPNGRRASTARGYLD-IAKQRPNL-TIETHAT 225
Query: 182 TKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVK 241
T VI + A GV Y KG+ RV A +EV+L AGAIA+ Q+L SG+G HL+E
Sbjct: 226 TDVIEFEGKRAVGVSY-ERKGQAQRVRARREVLLCAGAIASPQILQRSGVGNPEHLEEFD 284
Query: 242 IPVKQDLR-VGENLK------LNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSN 294
IPV +L VGENL+ + + P+ + A LK Y+Q + + +
Sbjct: 285 IPVVHELPGVGENLQDHLEMYIQYECKKPISLYPA-LK--WYNQPKIGAEWLFFGKGIGA 341
Query: 295 AGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRT 354
+ + G+I T P+L+ H L I +Y+ VQ +
Sbjct: 342 SNQFEAAGFIRTNDQEEWPNLQYHFL-----------PIAISYNGKSAVQAHGFQAH--- 387
Query: 355 DMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITR--LEQT 412
V SM + S G++ L S DP A P I +S +D R ITR +EQ
Sbjct: 388 ---VGSMRSM---SRGRIRLTSRDPKAAPSILFNYMSHDKDWQEF-RDAIRITREIIEQP 440
Query: 413 EAIRLAGGTLMSLNLEACSQYP-WRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVV 471
T+ S P +S ++R T +P G+ MG+ADD AVV
Sbjct: 441 --------TMDEYRGREISPGPNVQSDAELDEFVRQHAETAYHPAGSCKMGSADDAMAVV 492
Query: 472 TPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSYNIP 521
+V G++GLRV D S++P +A + MI EK AD V+ +P
Sbjct: 493 DGAGRVHGLEGLRVIDASIMPVIATGNLNAPTIMIAEKMADKVRGRDPLP 542
>sp|Q8BJ64|CHDH_MOUSE Choline dehydrogenase, mitochondrial OS=Mus musculus GN=Chdh PE=1
SV=1
Length = 596
Score = 170 bits (430), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 145/507 (28%), Positives = 229/507 (45%), Gaps = 67/507 (13%)
Query: 36 GKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAV 95
G+ GGSS++ ++Y RG + DY + + G GW Y L YF K++ + E A
Sbjct: 127 GRVWGGSSSLNAMVYIRGHAEDYNRWHREGAEGWDYAHCLPYFRKAQRH------ELGAN 180
Query: 96 HGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLR 155
G P+ + + K N+ + + F +A++ GYP +DMN + GF + G R
Sbjct: 181 MYRGGDGPLHVSRGKTNHPLHQAFLQAARQAGYPFTEDMNG-FQQEGFGWMDMTVHQGKR 239
Query: 156 FSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVIL 215
+S A AYL P+ R NL ++ V++V+ A GVEY+ G+ + ++EVIL
Sbjct: 240 WSTACAYLHPVL-SRPNLRAEVQTLVSRVLFEGTR-AVGVEYIKD-GQRHKAYVSREVIL 296
Query: 216 TAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGENLK------LNAQFTGPVMAFS 268
+ GAI + QLL+LSG+G L ++ IPV L VG+NL+ + T P+ S
Sbjct: 297 SGGAINSPQLLMLSGVGNADDLRKLDIPVVCHLPGVGQNLQDHLEVYVQQACTQPITLHS 356
Query: 269 A--PLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQND 326
A PL++ E ++ Y G + A L G+I + PD++ H L Q D
Sbjct: 357 AQKPLRKVCIGLEWLWSY----TGDGATAHL-ETGGFIRSRPGVPHPDIQFHFLPSQVID 411
Query: 327 IRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCID 386
+ AY + + + S G + L+SA+P P I
Sbjct: 412 HGRKPTQQEAYQ--------------------VHVGTMRATSVGWLKLRSANPRDHPVIH 451
Query: 387 TGILS---EPEDLATLIRGTDYITRLEQTEAIR---LAGGTLMSLNLEACSQYPWRSTHS 440
LS + ED +R + I E R L G+ + + E
Sbjct: 452 PNYLSTETDVEDFRQCVRLSREIFAQEALAPFRGKELQPGSHVQSDKEI----------- 500
Query: 441 WTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSD 500
++R + +P T MG + DP AVV KV G++ LRV D S++P+ + +
Sbjct: 501 -DAFVRAKADSAYHPSCTCKMGRSSDPTAVVDAQTKVIGVENLRVVDASIMPSVVSGNLN 559
Query: 501 AISYMIGEKCADLVK-----TSYNIPI 522
A + MI EK AD++K N+P+
Sbjct: 560 APTVMIAEKAADIIKGHPALEDKNVPV 586
>sp|B0CKN4|BETA_BRUSI Choline dehydrogenase OS=Brucella suis (strain ATCC 23445 / NCTC
10510) GN=betA PE=3 SV=1
Length = 549
Score = 169 bits (428), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 145/524 (27%), Positives = 244/524 (46%), Gaps = 57/524 (10%)
Query: 1 MSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITA-GKGLGGSSAVQNILYQRGTSYDYE 59
+S +++ +D + +EP G R +T GK LGGSS++ ++Y RG + D++
Sbjct: 49 LSFPMNMETYDWGFSSEPEPHIG-----GRSLVTPRGKVLGGSSSINGMVYVRGHACDFD 103
Query: 60 NFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIF 119
++++ G GW Y + L YF + E+ + + GT G P+ + + K +N + F
Sbjct: 104 HWSQSGARGWAYADVLPYFKRMENSQ----GGQEGWRGTNG--PLYVQRGKRDNPLFHAF 157
Query: 120 ETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRS 179
+ + G+ D N + GF + G R+SAA+AYL P A KR N+ ++K
Sbjct: 158 VEAGHQAGFEVTDDYNGEKQE-GFGPMEQTIHNGRRWSAANAYLKP-ALKRPNVKLVK-- 213
Query: 180 KVTKVIINDQNVATGVEYVNSKGETVR-VTANKEVILTAGAIANAQLLLLSGIGPKAHLD 238
+ I+ + A GVE G T + A +EVI+ A +I + +LL+LSGIGP AHL
Sbjct: 214 GFARKIVLEGKRAVGVEI--EAGRTFSTIRARREVIIAASSINSPKLLMLSGIGPAAHLK 271
Query: 239 EVKIPVKQDLR-VGENLK------LNAQFTGPVMAFSAPLKRTVYSQEMV-FKYLVNRIG 290
E I + D VG+NL+ + + T P+ +S K ++S+ + ++L+ + G
Sbjct: 272 EHGIDLVADRPGVGQNLQDHLEVYIQQECTQPITLYS---KLNLFSKARIGVEWLLFKTG 328
Query: 291 PLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNL 350
+ S ++ + PD++ H L + YD Q+
Sbjct: 329 DGATNHFES-AAFVRSKAGVEYPDIQYHFL-----------PVAIRYDGKAAAQSHGFQA 376
Query: 351 NKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLE 410
+ + + KS G VTL+SA+P P I +S +D A + RL
Sbjct: 377 H---------VGPMRSKSRGSVTLRSANPREKPVIKFNYMSHEDDWADF----RHCVRLT 423
Query: 411 QTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAV 470
+ + A ++ + ++ +IR + +P GT MG DDP AV
Sbjct: 424 REIFGQAAFDPYRGAEIQPGAHV--QTDDEIDNFIREHVESAFHPCGTCKMGAVDDPMAV 481
Query: 471 VTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLV 514
V P+ +V G++GLRVAD S+ P + S M+GEK +D +
Sbjct: 482 VDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASDHI 525
>sp|A5VPA6|BETA_BRUO2 Choline dehydrogenase OS=Brucella ovis (strain ATCC 25840 / 63/290
/ NCTC 10512) GN=betA PE=3 SV=1
Length = 549
Score = 169 bits (428), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 145/524 (27%), Positives = 244/524 (46%), Gaps = 57/524 (10%)
Query: 1 MSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITA-GKGLGGSSAVQNILYQRGTSYDYE 59
+S +++ +D + +EP G R +T GK LGGSS++ ++Y RG + D++
Sbjct: 49 LSFPMNMETYDWGFSSEPEPHIG-----GRSLVTPRGKVLGGSSSINGMVYVRGHACDFD 103
Query: 60 NFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIF 119
++++ G GW Y + L YF + E+ + + GT G P+ + + K +N + F
Sbjct: 104 HWSQSGARGWAYADVLPYFKRMENSQ----GGQEGWRGTNG--PLYVQRGKRDNPLFHAF 157
Query: 120 ETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRS 179
+ + G+ D N + GF + G R+SAA+AYL P A KR N+ ++K
Sbjct: 158 VEAGHQAGFEVTDDYNGEKQE-GFGPMEQTIHNGRRWSAANAYLKP-ALKRPNVKLVK-- 213
Query: 180 KVTKVIINDQNVATGVEYVNSKGETVR-VTANKEVILTAGAIANAQLLLLSGIGPKAHLD 238
+ I+ + A GVE G T + A +EVI+ A +I + +LL+LSGIGP AHL
Sbjct: 214 GFARKIVLEGKRAVGVEI--EAGRTFSTIRARREVIIAASSINSPKLLMLSGIGPAAHLK 271
Query: 239 EVKIPVKQDLR-VGENLK------LNAQFTGPVMAFSAPLKRTVYSQEMV-FKYLVNRIG 290
E I + D VG+NL+ + + T P+ +S K ++S+ + ++L+ + G
Sbjct: 272 EHGIDLVADRPGVGQNLQDHLEVYIQQECTQPITLYS---KLNLFSKARIGVEWLLFKTG 328
Query: 291 PLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNL 350
+ S ++ + PD++ H L + YD Q+
Sbjct: 329 DGATNHFES-AAFVRSKAGVEYPDIQYHFL-----------PVAIRYDGKAAAQSHGFQA 376
Query: 351 NKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLE 410
+ + + KS G VTL+SA+P P I +S +D A + RL
Sbjct: 377 H---------VGPMRSKSRGSVTLRSANPREKPVIKFNYMSHEDDWADF----RHCVRLT 423
Query: 411 QTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAV 470
+ + A ++ + ++ +IR + +P GT MG DDP AV
Sbjct: 424 REIFGQAAFDPYRGAEIQPGAHV--QTDDEIDNFIREHVESAFHPCGTCKMGAVDDPMAV 481
Query: 471 VTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLV 514
V P+ +V G++GLRVAD S+ P + S M+GEK +D +
Sbjct: 482 VDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASDHI 525
>sp|B7N8L3|BETA_ECOLU Choline dehydrogenase OS=Escherichia coli O17:K52:H18 (strain
UMN026 / ExPEC) GN=betA PE=3 SV=1
Length = 556
Score = 168 bits (426), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 163/528 (30%), Positives = 241/528 (45%), Gaps = 55/528 (10%)
Query: 5 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 64
L ++ AY EP F + N R++ GKGLGGSS + + Y RG + D +N+A+
Sbjct: 55 LQGKRYNWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQE 110
Query: 65 -GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSA 123
G W Y + L Y+ K+E R V N+ HG G + V K N + + E
Sbjct: 111 PGLENWSYLDCLPYYRKAET-RDVGEND---YHGGDGPVSVTTSKPGVNPLFEAMIEAGV 166
Query: 124 QELGYPCPKDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 182
Q GYP D+N Y GF + +T +G R S A YL A R NL ++ +T
Sbjct: 167 Q-AGYPRTDDLNG-YQQEGFGPMDRTVTPHGRRASTARGYLDQ-AKSRPNL-TIRTHAMT 222
Query: 183 KVIINDQNVATGVEYVNSKGET-VRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVK 241
II D A GVE++ R TANKEV+L AGAIA+ Q+L SG+G L E
Sbjct: 223 DHIIFDGKRAVGVEWLEGDSTIPTRATANKEVLLCAGAIASPQILQRSGVGSAELLAEFD 282
Query: 242 IPVKQDLR-VGENLK------LNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSN 294
IP+ DL VGENL+ L + PV + P + ++ ++L G +
Sbjct: 283 IPLVHDLPGVGENLQDHLEMYLQYECKEPVSLY--PALQWWNQPKIGAEWLFGGTG-VGA 339
Query: 295 AGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRT 354
+ + G+I + + A P+++ H L N N + + F V
Sbjct: 340 SNHFEAGGFIRSREEFAWPNIQYHFLPVAIN--YNGSNAVKEHGFQCHVG---------- 387
Query: 355 DMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITR-LEQTE 413
S+ +P S G V +KS DP P I +S +D R ITR +
Sbjct: 388 -------SMRSP-SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEF-RDAIRITREIMHQP 438
Query: 414 AIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTP 473
A+ G +S +E ++ ++R+ T +P GT MG D AVV
Sbjct: 439 ALDQYRGREISPGVEC------QTDEQLDEFVRNHAETAFHPCGTCKMGY--DEMAVVDG 490
Query: 474 DLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSYNIP 521
+ +V G++GLRV D S++P I +A + MIGEK AD+++ +P
Sbjct: 491 EGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKMADMIRGKDALP 538
>sp|A9M9H8|BETA_BRUC2 Choline dehydrogenase OS=Brucella canis (strain ATCC 23365 / NCTC
10854) GN=betA PE=3 SV=1
Length = 549
Score = 168 bits (425), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 144/524 (27%), Positives = 244/524 (46%), Gaps = 57/524 (10%)
Query: 1 MSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITA-GKGLGGSSAVQNILYQRGTSYDYE 59
+S +++ +D + +EP G R +T GK LGGSS++ ++Y RG + D++
Sbjct: 49 LSFPMNMETYDWGFSSEPEPHIG-----GRSLVTPRGKVLGGSSSINGMVYVRGHACDFD 103
Query: 60 NFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIF 119
++++ G GW Y + L YF + E+ + + GT G P+ + + K +N + F
Sbjct: 104 HWSQSGARGWAYADVLPYFKRMENSQ----GGQEGWRGTNG--PLYVQRGKRDNPLFHAF 157
Query: 120 ETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRS 179
+ + G+ D N + GF + G R+SAA+AYL P A KR N+ ++K
Sbjct: 158 VEAGHQAGFEVADDYNGEKQE-GFGPMEQTIHNGRRWSAANAYLKP-ALKRPNVKLVK-- 213
Query: 180 KVTKVIINDQNVATGVEYVNSKGETVR-VTANKEVILTAGAIANAQLLLLSGIGPKAHLD 238
+ I+ + A GVE G T + A +EVI+ A +I + +LL+LSGIGP AHL
Sbjct: 214 GFARKIVLEGKRAVGVEI--EAGRTFSTIRARREVIIAASSINSPKLLMLSGIGPAAHLK 271
Query: 239 EVKIPVKQDLR-VGENLK------LNAQFTGPVMAFSAPLKRTVYSQEMV-FKYLVNRIG 290
E I + D VG+NL+ + + T P+ +S + ++S+ + ++L+ + G
Sbjct: 272 EHGIDLVADRPGVGQNLQDHLEVYIQQECTQPITLYS---ELNLFSKARIGVEWLLFKTG 328
Query: 291 PLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNL 350
+ S ++ + PD++ H L + YD Q+
Sbjct: 329 DGATNHFES-AAFVRSKAGVEYPDIQYHFL-----------PVAIRYDGKAAAQSHGFQA 376
Query: 351 NKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLE 410
+ + + KS G VTL+SA+P P I +S +D A + RL
Sbjct: 377 H---------VGPMRSKSRGSVTLRSANPREKPVIKFNYMSHEDDWADF----RHCVRLT 423
Query: 411 QTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAV 470
+ + A ++ + ++ +IR + +P GT MG DDP AV
Sbjct: 424 REIFGQAAFDPYRGAEIQPGAHV--QTDDEIDNFIREHVESAFHPCGTCKMGAVDDPMAV 481
Query: 471 VTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLV 514
V P+ +V G++GLRVAD S+ P + S M+GEK +D +
Sbjct: 482 VDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASDHI 525
>sp|Q8G1Z8|BETA_BRUSU Choline dehydrogenase OS=Brucella suis biovar 1 (strain 1330)
GN=betA PE=3 SV=1
Length = 549
Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 144/524 (27%), Positives = 244/524 (46%), Gaps = 57/524 (10%)
Query: 1 MSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITA-GKGLGGSSAVQNILYQRGTSYDYE 59
+S +++ +D + +EP G R +T GK LGGSS++ ++Y RG + D++
Sbjct: 49 LSFPMNMETYDWGFSSEPEPHIG-----GRSLVTPRGKVLGGSSSINGMVYVRGHACDFD 103
Query: 60 NFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIF 119
++++ G GW Y + L YF + E+ + + GT G P+ + + K +N + F
Sbjct: 104 HWSQSGARGWAYADVLPYFKRMENSQ----GGQEGWRGTNG--PLYVQRGKRDNPLFHAF 157
Query: 120 ETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRS 179
+ + G+ D N + GF + G R+SAA+AYL P A KR N+ ++K
Sbjct: 158 VEAGHQAGFEVTDDYNGEKQE-GFGPMEQTIHNGRRWSAANAYLKP-ALKRPNVKLVK-- 213
Query: 180 KVTKVIINDQNVATGVEYVNSKGETVR-VTANKEVILTAGAIANAQLLLLSGIGPKAHLD 238
+ I+ + A GVE G T + A +EVI+ A +I + +LL+LSGIGP AHL
Sbjct: 214 GFARKIVLEGKRAVGVEI--EAGRTFSTIRARREVIIAASSINSPKLLMLSGIGPAAHLK 271
Query: 239 EVKIPVKQDLR-VGENLK------LNAQFTGPVMAFSAPLKRTVYSQEMV-FKYLVNRIG 290
E I + D VG+NL+ + + T P+ +S + ++S+ + ++L+ + G
Sbjct: 272 EHGIDLVADRPGVGQNLQDHLEVYIQQECTQPITLYS---ELNLFSKARIGVEWLLFKTG 328
Query: 291 PLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNL 350
+ S ++ + PD++ H L + YD Q+
Sbjct: 329 DGATNHFES-AAFVRSKAGVEYPDIQYHFL-----------PVAIRYDGKAAAQSHGFQA 376
Query: 351 NKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLE 410
+ + + KS G VTL+SA+P P I +S +D A + RL
Sbjct: 377 H---------VGPMRSKSRGSVTLRSANPREKPVIKFNYMSHEDDWADF----RHCVRLT 423
Query: 411 QTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAV 470
+ + A ++ + ++ +IR + +P GT MG DDP AV
Sbjct: 424 REIFGQAAFDPYRGAEIQPGAHV--QTDDEIDNFIREHVESAFHPCGTCKMGAVDDPMAV 481
Query: 471 VTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLV 514
V P+ +V G++GLRVAD S+ P + S M+GEK +D +
Sbjct: 482 VDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASDHI 525
>sp|Q00593|ALKJ_PSEOL Alcohol dehydrogenase [acceptor] OS=Pseudomonas oleovorans GN=alkJ
PE=1 SV=1
Length = 558
Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 142/496 (28%), Positives = 231/496 (46%), Gaps = 52/496 (10%)
Query: 36 GKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAV 95
GK LGGSS++ ++Y RG DY + + WG+ L+ F + E + +E
Sbjct: 79 GKTLGGSSSINAMVYIRGHEDDYHAWEQAAGRYWGWYRALELFKRLECNQRFDKSEH--- 135
Query: 96 HGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVD-VGFAELPGMTRYGL 154
HG G L V K N + + F + E D N Y D VGF ++ + G
Sbjct: 136 HGVDGELAVSDLKYI--NPLSKAFVQAGMEANINFNGDFNGEYQDGVGFYQV--TQKNGQ 191
Query: 155 RFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSK-GETVRVTANKEV 213
R+S+A A+L + R NL ++ + +K++ D+ A GV Y+ V+ T+ EV
Sbjct: 192 RWSSARAFLHGVL-SRPNLDIITDAHASKILFEDRK-AVGVSYIKKNMHHQVKTTSGGEV 249
Query: 214 ILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL-RVGENLKLNAQFT--------GPV 264
+L+ GA+ LL+LSG+G A L E + + DL VG+NL+ + T P+
Sbjct: 250 LLSLGAVGTPHLLMLSGVGAAAELKEHGVSLVHDLPEVGKNLQDHLDITLMCAANSREPI 309
Query: 265 MAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQ 324
+ + R V +F Y+ R G L+ + + G++ + + RP+L+ H L
Sbjct: 310 GVALSFIPRGVSG---LFSYVFKREGFLT-SNVAESGGFVKSSPDRDRPNLQFHFLPTYL 365
Query: 325 NDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPC 384
D + KI Y + + + + PKS G++ LKSA+PL PP
Sbjct: 366 KD--HGRKIAGGYGY------------------TLHICDLLPKSRGRIGLKSANPLQPPL 405
Query: 385 IDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCY 444
ID LS+ ED+ T+I G ++ AI A E ++
Sbjct: 406 IDPNYLSDHEDIKTMIAG------IKIGRAILQAPSMAKHFKHEVVPGQAVKTDDEIIED 459
Query: 445 IRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISY 504
IR T +PVGT MG DP +VV P LK++G+ +RV D S++P+ + ++A +
Sbjct: 460 IRRRAETIYHPVGTCRMGK--DPASVVDPCLKIRGLANIRVVDASIMPHLVAGNTNAPTI 517
Query: 505 MIGEKCADLVKTSYNI 520
MI E A+++ + ++
Sbjct: 518 MIAENAAEIIMRNLDV 533
>sp|Q8YFY2|BETA_BRUME Choline dehydrogenase OS=Brucella melitensis biotype 1 (strain 16M
/ ATCC 23456 / NCTC 10094) GN=betA PE=3 SV=2
Length = 549
Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 142/520 (27%), Positives = 241/520 (46%), Gaps = 55/520 (10%)
Query: 1 MSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYEN 60
+S +++ +D + +EP +R + GK LGGSS++ ++Y RG + D+++
Sbjct: 49 LSFPMNMETYDWGFSSEPEPH----IRGRSLVTPRGKVLGGSSSINGMVYVRGHACDFDH 104
Query: 61 FAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFE 120
+++ G GW Y + L YF + E+ + + GT G P+ + + K +N + F
Sbjct: 105 WSQSGARGWAYADVLPYFKRMENSQ----GGQEGWRGTNG--PLYVQRGKRDNPLFHAFV 158
Query: 121 TSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSK 180
+ + G+ D N + GF + G R+SAA+AYL P A KR N+ ++K
Sbjct: 159 EAGHQAGFEVTDDYNGEKQE-GFGPMEQTIHNGRRWSAANAYLKP-ALKRPNVKLVK--G 214
Query: 181 VTKVIINDQNVATGVEYVNSKGETVR-VTANKEVILTAGAIANAQLLLLSGIGPKAHLDE 239
+ I+ + A GVE G T + A +EVI+ A +I + +LL+LSGIGP AHL E
Sbjct: 215 FARKIVLEGKRAVGVEI--EAGRTFSTIRARREVIIAASSINSPKLLMLSGIGPAAHLKE 272
Query: 240 VKIPVKQDLR-VGENLK------LNAQFTGPVMAFSAPLKRTVYSQEMV-FKYLVNRIGP 291
I + D VG+NL+ + + T P+ +S K ++S+ + ++L+ + G
Sbjct: 273 HGIDLVADRPGVGQNLQDHLEVYIQQECTQPITLYS---KLNLFSKARIGVEWLLFKTGD 329
Query: 292 LSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLN 351
+ S ++ + PD++ H L + YD Q+ +
Sbjct: 330 GATNHFES-AAFVRSKAGVEYPDIQYHFL-----------PVAIRYDGKAAAQSHGFQAH 377
Query: 352 KRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQ 411
+ + KS G VTL+SA+P P I +S +D A + RL +
Sbjct: 378 ---------VGPMRSKSRGSVTLRSANPREKPVIKFNYMSHEDDWADF----RHCVRLTR 424
Query: 412 TEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVV 471
+ A ++ + ++ +IR + +P GT MG DDP AVV
Sbjct: 425 EIFGQAAFDPYRGAEIQPGAHV--QTDDEIDNFIREHVESAFHPCGTCKMGAVDDPMAVV 482
Query: 472 TPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCA 511
P+ +V G++GLRVAD S+ P + S M+GEK +
Sbjct: 483 DPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKAS 522
>sp|Q985M5|BETA_RHILO Choline dehydrogenase OS=Rhizobium loti (strain MAFF303099) GN=betA
PE=3 SV=1
Length = 550
Score = 167 bits (422), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 152/528 (28%), Positives = 241/528 (45%), Gaps = 65/528 (12%)
Query: 1 MSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYEN 60
+S L++S +D + +EP G V + GK +GGSS++ ++Y RG + D+++
Sbjct: 50 LSIPLNMSLYDWGFASEPEPHLGGRV----LATPRGKVIGGSSSINGMVYVRGHARDFDH 105
Query: 61 FAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGY-LPVGLFKNKENNIIREIF 119
+A+ G GWG+ + L YF + ED G +G+ P+ + + N + F
Sbjct: 106 WAEEGATGWGFADVLPYFKRMED-------NDGGEDGWRGHGGPLHVQRGSRKNPLYGAF 158
Query: 120 ETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRS 179
+ ++ G+ D N + GF + G R+SAA AYL P A KR N+ ++K
Sbjct: 159 VEAGRQAGFELTDDYNGSKQE-GFGPMEQTISGGRRWSAASAYLKP-ALKRKNVSLVK-G 215
Query: 180 KVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDE 239
+VII +Q A GVE + + + V A +EVI+ A +I + ++L+LSGIGP HL E
Sbjct: 216 FARRVIIENQR-AIGVE-IEAHKQIQVVKARREVIVAASSINSPKILMLSGIGPAEHLRE 273
Query: 240 VKIPVKQDLR-VGENLK------LNAQFTGPVMAFSA--PLKRTVYSQEMVFKYLVNRIG 290
I V D VG NL+ + + T P+ S P + + + +F + +G
Sbjct: 274 NGIAVVADRPGVGRNLQDHMELYIQQESTKPITLNSVLNPFSKALIGAQWLF--FKSGLG 331
Query: 291 PLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCK-IKRAYDFNDEVQTAYVN 349
++ + ++ + PD++ H F +R K +++ F V
Sbjct: 332 ATNH---FEAAAFVRSRAGVDYPDIQYH---FIPAAVRYDGKAAAKSHGFQAHVGP---- 381
Query: 350 LNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATL---IRGTDYI 406
+ KS G VTL+S DP A P I +S P+D IR T I
Sbjct: 382 --------------MRSKSRGSVTLRSPDPKAKPVIRFNYMSHPDDWTEFRHCIRLTREI 427
Query: 407 TRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADD 466
+A R G +S +S +IR + +P GT MG ADD
Sbjct: 428 FGQSAFDAFR---GQEISPGSHV------QSDDDLDVFIRDHAESAYHPCGTCKMGRADD 478
Query: 467 PNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLV 514
+VV P+ +V G+ GLRVAD S+ P +A S M GEK +D +
Sbjct: 479 VTSVVDPECRVIGVDGLRVADSSIFPRVTNGNLNAPSIMTGEKASDHI 526
>sp|Q6UPE0|CHDH_RAT Choline dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Chdh
PE=1 SV=1
Length = 599
Score = 166 bits (421), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 138/489 (28%), Positives = 223/489 (45%), Gaps = 50/489 (10%)
Query: 36 GKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAV 95
G+ GGSS++ ++Y RG + DY + + G GW Y L YF K++ + E A
Sbjct: 130 GRVWGGSSSLNAMVYIRGHAEDYNRWHRQGAEGWDYAHCLPYFRKAQKH------ELGAN 183
Query: 96 HGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLR 155
G P+ + + K N+ + + F +A++ GYP +DMN + GF + G R
Sbjct: 184 MYRGGDGPLHVSRGKTNHPLHQAFLQAARQAGYPFTEDMNG-FQQEGFGWMDMTIHQGKR 242
Query: 156 FSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVIL 215
+S A AYL P A R NL ++ V++V+ + A GVEY+ G++ + ++EVIL
Sbjct: 243 WSTASAYLRP-ALSRPNLRAEVQTLVSRVLF-EGTRAVGVEYIKD-GQSHKAYVSREVIL 299
Query: 216 TAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGENLK------LNAQFTGPVMAFS 268
+ GAI + QLL+LSG+G L ++ IPV L VG+NL+ + T P+ S
Sbjct: 300 SGGAINSPQLLMLSGVGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQHACTQPITLHS 359
Query: 269 A--PLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQND 326
A PL++ E ++++ G + A L G+I + PD++ H L Q D
Sbjct: 360 AQKPLRKVCIGLEWLWRF----TGDGATAHL-ETGGFIRSRPGVPHPDIQFHFLPSQVID 414
Query: 327 IRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCID 386
+ AY + + + S G + L+S +P P I+
Sbjct: 415 HGRKPTQQEAYQ--------------------VHVGTMRATSVGWLKLRSTNPQDHPMIN 454
Query: 387 TGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIR 446
LS D+ + + EA L+ S +S ++R
Sbjct: 455 PNYLSTETDVEDFRQCVKLTREIFAQEAF----APFRGKELQPGSHV--QSDKEIDAFVR 508
Query: 447 HLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMI 506
+ +P T MG DP AVV +V G++ LRV D S++P+ + +A + MI
Sbjct: 509 AKADSAYHPSCTCKMGQPSDPTAVVDQQTRVIGVENLRVIDASIMPSVVSGNLNAPTIMI 568
Query: 507 GEKCADLVK 515
EK AD++K
Sbjct: 569 AEKAADVIK 577
>sp|B5Z1R0|BETA_ECO5E Choline dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 /
EHEC) GN=betA PE=3 SV=1
Length = 562
Score = 166 bits (420), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 166/536 (30%), Positives = 241/536 (44%), Gaps = 71/536 (13%)
Query: 5 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 64
L ++ AY EP F + N R++ GKGLGGSS + + Y RG + D +N+AK
Sbjct: 55 LQGKRYNWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLDNWAKE 110
Query: 65 -GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSA 123
G W Y + L Y+ K+E R V N+ HG G + V K N + + E
Sbjct: 111 PGLENWSYLDCLPYYRKAET-RDVGEND---YHGGDGPVSVTTSKPGVNPLFEAMIEAGV 166
Query: 124 QELGYPCPKDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 182
Q GYP D+N Y GF + +T G R S A YL A R NL ++ +T
Sbjct: 167 Q-AGYPRTDDLNG-YQQEGFGPMDRTVTPQGRRASTARGYLDQ-AKSRPNL-TIRTHAMT 222
Query: 183 KVIINDQNVATGVEYVNSKGET-VRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVK 241
II D A GVE++ R TANKEV+L AGAIA+ Q+L SG+G L E
Sbjct: 223 DHIIFDCKRAVGVEWLEGDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFD 282
Query: 242 IPVKQDLR-VGENLK------LNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSN 294
IP+ DL VGENL+ L + PV + P + ++ ++L G +
Sbjct: 283 IPLVHDLPGVGENLQDHLEMYLQYECKEPVSLY--PALQWWNQPKIGAEWLFGGTG-VGA 339
Query: 295 AGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRT 354
+ + G+I + + A P+++ H L N N + + F V
Sbjct: 340 SNHFEAGGFIRSREEFAWPNIQYHFLPVAIN--YNGSNAVKEHGFQCHVG---------- 387
Query: 355 DMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEA 414
S+ +P S G V +KS DP P I +S +D E +A
Sbjct: 388 -------SMRSP-SRGHVRIKSRDPHQHPAILFNYMSHEQDWQ------------EFRDA 427
Query: 415 IRLAGGTLMSLNLEACSQYPWRSTHSWT-C--------YIRHLTTTTSNPVGTVMMGNAD 465
IR+ T ++ A QY R T C ++R+ T +P GT MG
Sbjct: 428 IRI---TREIMHQPALDQYRGREISPGTECQTDEQLDEFVRNHAETAFHPCGTCKMGY-- 482
Query: 466 DPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSYNIP 521
D +VV + +V G++GLRV D S++P I +A + MIGEK AD+++ +P
Sbjct: 483 DEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKMADMIRGKEALP 538
>sp|Q8X6C6|BETA_ECO57 Choline dehydrogenase OS=Escherichia coli O157:H7 GN=betA PE=3 SV=1
Length = 562
Score = 166 bits (420), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 166/536 (30%), Positives = 241/536 (44%), Gaps = 71/536 (13%)
Query: 5 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 64
L ++ AY EP F + N R++ GKGLGGSS + + Y RG + D +N+AK
Sbjct: 55 LQGKRYNWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLDNWAKE 110
Query: 65 -GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSA 123
G W Y + L Y+ K+E R V N+ HG G + V K N + + E
Sbjct: 111 PGLENWSYLDCLPYYRKAET-RDVGEND---YHGGDGPVSVTTSKPGVNPLFEAMIEAGV 166
Query: 124 QELGYPCPKDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 182
Q GYP D+N Y GF + +T G R S A YL A R NL ++ +T
Sbjct: 167 Q-AGYPRTDDLNG-YQQEGFGPMDRTVTPQGRRASTARGYLDQ-AKSRPNL-TIRTHAMT 222
Query: 183 KVIINDQNVATGVEYVNSKGET-VRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVK 241
II D A GVE++ R TANKEV+L AGAIA+ Q+L SG+G L E
Sbjct: 223 DHIIFDCKRAVGVEWLEGDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFD 282
Query: 242 IPVKQDLR-VGENLK------LNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSN 294
IP+ DL VGENL+ L + PV + P + ++ ++L G +
Sbjct: 283 IPLVHDLPGVGENLQDHLEMYLQYECKEPVSLY--PALQWWNQPKIGAEWLFGGTG-VGA 339
Query: 295 AGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRT 354
+ + G+I + + A P+++ H L N N + + F V
Sbjct: 340 SNHFEAGGFIRSREEFAWPNIQYHFLPVAIN--YNGSNAVKEHGFQCHVG---------- 387
Query: 355 DMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEA 414
S+ +P S G V +KS DP P I +S +D E +A
Sbjct: 388 -------SMRSP-SRGHVRIKSRDPHQHPAILFNYMSHEQDWQ------------EFRDA 427
Query: 415 IRLAGGTLMSLNLEACSQYPWRSTHSWT-C--------YIRHLTTTTSNPVGTVMMGNAD 465
IR+ T ++ A QY R T C ++R+ T +P GT MG
Sbjct: 428 IRI---TREIMHQPALDQYRGREISPGTECQTDEQLDEFVRNHAETAFHPCGTCKMGY-- 482
Query: 466 DPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSYNIP 521
D +VV + +V G++GLRV D S++P I +A + MIGEK AD+++ +P
Sbjct: 483 DEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKMADMIRGKEALP 538
>sp|A6X2G7|BETA_OCHA4 Choline dehydrogenase OS=Ochrobactrum anthropi (strain ATCC 49188 /
DSM 6882 / NCTC 12168) GN=betA PE=3 SV=1
Length = 549
Score = 165 bits (418), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 144/523 (27%), Positives = 241/523 (46%), Gaps = 55/523 (10%)
Query: 1 MSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITA-GKGLGGSSAVQNILYQRGTSYDYE 59
+S +++ +D + EP G R +T GK LGGSS++ ++Y RG + DY+
Sbjct: 49 LSFPMNMETYDWGFSTEPEPHIG-----GRSLVTPRGKVLGGSSSINGMVYVRGHARDYD 103
Query: 60 NFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIF 119
++++ G GW Y + L YF + E+ + GT G P+ + + K +N + F
Sbjct: 104 HWSESGARGWAYADVLPYFKRMENSS----GGQEGWRGTNG--PLYIQRGKRDNPLFHAF 157
Query: 120 ETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRS 179
+ E G+ +D N + GF + G R+SAA+AYL P A KR N+ ++K
Sbjct: 158 VEAGHEAGFEVTEDYNGEKQE-GFGPMEQTIHNGRRWSAANAYLKP-ALKRPNVKLVK-- 213
Query: 180 KVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDE 239
+ + I+ + A GVE + + + A +EVI+ A +I + +LL+LSGIGP A L E
Sbjct: 214 GLARKIVLEGKRAVGVEIEAGRSFST-IRARREVIIAASSINSPKLLMLSGIGPAAQLKE 272
Query: 240 VKIPVKQDLR-VGENLK------LNAQFTGPVMAFSAPLKRTVYSQEMV-FKYLVNRIGP 291
I V D VG+NL+ + + T P+ +S K ++S+ + ++L + G
Sbjct: 273 HGIEVVADRPGVGQNLQDHLEVYIQQECTQPITLYS---KLNLFSKAKIGAEWLFFKTGD 329
Query: 292 LSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLN 351
+ S ++ + PD++ H L + YD Q+ +
Sbjct: 330 GATNHFES-AAFLRSKAGVEYPDIQYHFL-----------PVAIRYDGKAAAQSHGFQAH 377
Query: 352 KRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQ 411
+ + KS G VTL+SA+P P I +S +D A + RL +
Sbjct: 378 ---------VGPMRSKSRGSVTLRSANPREKPVIKFNYMSHEDDWADF----RHCVRLTR 424
Query: 412 TEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVV 471
+ A ++ + +S +I+ + +P GT MG DDP AVV
Sbjct: 425 EIFGQAAFNPYRGAEIQPGAHV--QSDDEIDNFIKEHVESAFHPCGTCKMGAVDDPMAVV 482
Query: 472 TPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLV 514
+ +V G++GLRVAD S+ P + S M+GEK +D +
Sbjct: 483 DAECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASDHI 525
>sp|Q4K4K7|BETA_PSEF5 Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477) GN=betA PE=3 SV=1
Length = 567
Score = 165 bits (417), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 156/529 (29%), Positives = 239/529 (45%), Gaps = 57/529 (10%)
Query: 5 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 64
L ++ AY +P + R++ GKGLGGSS + + Y RG + DY+ +AKL
Sbjct: 57 LQGRRYNWAYETDPEPH----MNGRRMECGRGKGLGGSSLINGMCYIRGNAMDYDGWAKL 112
Query: 65 -GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSA 123
G W Y + L YF K+E R + N+ HG +G + V K N + + E
Sbjct: 113 PGLEDWTYLDCLPYFRKAET-RDIGPND---YHGGEGPVSVTTPKAGNNPLFHAMVEAGV 168
Query: 124 QELGYPCPKDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 182
Q GYP +D+N Y GF + +T G R S A YL A KR+ L ++ +
Sbjct: 169 Q-AGYPRTEDLNG-YQQEGFGPMDRTVTPKGRRASTARGYLD-TAKKRSTLTIVTHALTD 225
Query: 183 KVIINDQNVATGVEYVN-SKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVK 241
K++ + A GV Y+ S E V A KEVI+++GAIA+ QLL SG+GP+A L+ +
Sbjct: 226 KILFEGKR-AVGVSYLQGSTEERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLD 284
Query: 242 IPVKQDLR-VGENLK------LNAQFTGPVMAFSAPLKRTVYSQEMV-FKYLVNRIGPLS 293
IPV DL VGENL+ L T PV + + L ++Q + ++L N G +
Sbjct: 285 IPVVHDLPGVGENLQDHLELYLQYACTQPVSLYPSLL---WWNQPAIGAEWLFNGTG-IG 340
Query: 294 NAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKR 353
+ + G+I T + P+++ H L V Y N
Sbjct: 341 ASNQFEAGGFIRTREEFEWPNIQYHFL---------------------PVAINYNGSNGV 379
Query: 354 TDMGVIS-MSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQT 412
+ G + M + S G+V LKS DP P I ++ +D G + Q
Sbjct: 380 KEHGFQAHMGSMRSPSRGRVQLKSKDPRQHPSILFNYMATEQDWQEFRDGIRLTREIMQQ 439
Query: 413 EAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVT 472
A+ G +S +E ++ ++R T +P + MG D AVV
Sbjct: 440 PALDPFRGREISPGIEV------QTDEQLDKFVREHAETAFHPSCSCKMGTDD--MAVVD 491
Query: 473 PDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSYNIP 521
+V G++GLRV D S++P +A + M+ EK AD ++ +P
Sbjct: 492 GQGRVHGMQGLRVVDASIMPIITTGNLNAPTIMMAEKIADKIRGRQPLP 540
>sp|Q6LGH5|BETA_PHOPR Choline dehydrogenase OS=Photobacterium profundum GN=betA PE=3 SV=1
Length = 568
Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 158/536 (29%), Positives = 241/536 (44%), Gaps = 74/536 (13%)
Query: 1 MSSVLS--LSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDY 58
M + LS ++ +A+ E AGL R+ + G+ LGGSS++ ++Y RG + DY
Sbjct: 47 MPTALSYPMNSEKYAWQFETQPEAGLDSRS--LHCPRGRVLGGSSSINGMVYVRGHACDY 104
Query: 59 ENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYL----PVGLFK--NKEN 112
+ + + G GW Y E L YF ++E + +HG Y PVG + E
Sbjct: 105 DEWVEQGAEGWSYQECLPYFRRAESW----------IHGEDTYRGGDGPVGTCNGNDMEL 154
Query: 113 NIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTN 172
N + + F + Q+ GYP D N Y GF + G+R S ++AYL A KR+N
Sbjct: 155 NPLYQAFIDAGQQAGYPKTDDYNG-YQQEGFGPMHMTVDKGIRASTSNAYLR-RAMKRSN 212
Query: 173 LYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 232
L V K KV+I ++ A GVE + G+ V AN EV+L+AG++ + QLL LSGIG
Sbjct: 213 LTVRKGVVTRKVLIKNKQ-AIGVE-IEVGGKVQSVYANTEVLLSAGSVGSPQLLQLSGIG 270
Query: 233 PKAHLDEVKIPVKQDLR-VGENLK--LNAQFTGPVMAFSAPL----KRTVYSQEMVFKYL 285
PKA L++ I VK DL VGENL+ L F A P+ K + S+ ++
Sbjct: 271 PKAVLEQAGIAVKHDLPGVGENLQDHLEVYFQ---YACHQPITLNSKLGLISKGLIGTRW 327
Query: 286 VNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYD----FND 341
+ + L + +I + P+++ H L YD F+
Sbjct: 328 ILQKDGLGATNHFESCAFIRSRAGLKWPNIQYHFL-----------PAAMRYDGQAAFDG 376
Query: 342 EVQTAYVNLNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILS---EPEDLAT 398
+V NK P+S G++ + SADP P I+ +S + +D
Sbjct: 377 HGFQVHVGPNK-------------PQSRGRIWITSADPHQKPNIEFNYISTEQDKQDWRD 423
Query: 399 LIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGT 458
IR T I + R G + + S + ++R + +P T
Sbjct: 424 CIRLTREILAQPAMDDYR---GEEIQPGADITSD------EAMDAWVRQNVESAYHPSCT 474
Query: 459 VMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLV 514
MG+ +DP V+ D +V+GI LRV D SV P +A + M+ EK AD +
Sbjct: 475 CKMGSDNDPMTVLNKDCQVRGIDSLRVIDSSVFPTIPNGNLNAPTIMVAEKAADAI 530
>sp|B6I074|BETA_ECOSE Choline dehydrogenase OS=Escherichia coli (strain SE11) GN=betA
PE=3 SV=1
Length = 556
Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 164/536 (30%), Positives = 241/536 (44%), Gaps = 71/536 (13%)
Query: 5 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 64
L ++ AY EP F + N R++ GKGLGGSS + + Y RG + D +N+A+
Sbjct: 55 LQGKRYNWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQE 110
Query: 65 -GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSA 123
G W Y + L Y+ K+E R V N+ HG G + V K N + + E
Sbjct: 111 PGLENWSYLDCLPYYRKAET-RDVGEND---YHGGDGPVSVTTSKPGVNPLFEAMIEAGV 166
Query: 124 QELGYPCPKDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 182
Q GYP D+N Y GF + +T G R S A YL A R NL ++ +T
Sbjct: 167 Q-AGYPRTDDLNG-YQQEGFGPMDRTVTPQGRRASTARGYLDQ-AKSRPNL-TIRTHAMT 222
Query: 183 KVIINDQNVATGVEYVNSKGET-VRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVK 241
II D A GVE++ R TANKEV+L AGAIA+ Q+L SG+G L E
Sbjct: 223 DHIIFDGKRAVGVEWLEGDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFD 282
Query: 242 IPVKQDLR-VGENLK------LNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSN 294
IP+ +L VGENL+ L + PV + P + ++ ++L G +
Sbjct: 283 IPLVHELPGVGENLQDHLEMYLQYECKEPVSLY--PALQWWNQPKIGAEWLFGGTG-VGA 339
Query: 295 AGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRT 354
+ + G+I + + A P+++ H L N N + + F V
Sbjct: 340 SNHFEAGGFIRSREEFAWPNIQYHFLPVAIN--YNGSNAVKEHGFQCHVG---------- 387
Query: 355 DMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEA 414
S+ +P S G V +KS DP P I +S +D E +A
Sbjct: 388 -------SMRSP-SRGHVRIKSRDPHQHPAILFNYMSHEQDWQ------------EFRDA 427
Query: 415 IRLAGGTLMSLNLEACSQYPWRSTHSWT-C--------YIRHLTTTTSNPVGTVMMGNAD 465
IR+ T ++ A QY R T C ++R+ T +P GT MG
Sbjct: 428 IRI---TREIMHQPALDQYRGREISPGTECQTDEQLDEFVRNHAETAFHPCGTCKMGY-- 482
Query: 466 DPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSYNIP 521
D +VV + +V G++GLRV D S++P I +A + MIGEK AD+++ +P
Sbjct: 483 DEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADMIRGQEALP 538
>sp|A7ZWV4|BETA_ECOHS Choline dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=betA
PE=3 SV=1
Length = 556
Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 164/536 (30%), Positives = 241/536 (44%), Gaps = 71/536 (13%)
Query: 5 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 64
L ++ AY EP F + N R++ GKGLGGSS + + Y RG + D +N+A+
Sbjct: 55 LQGKRYNWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQE 110
Query: 65 -GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSA 123
G W Y + L Y+ K+E R V N+ HG G + V K N + + E
Sbjct: 111 PGLENWSYLDCLPYYRKAET-RDVGEND---YHGGDGPVSVTTSKPGVNPLFEAMIEAGV 166
Query: 124 QELGYPCPKDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 182
Q GYP D+N Y GF + +T G R S A YL A R NL ++ +T
Sbjct: 167 Q-AGYPRTDDLNG-YQQEGFGPMDRTVTPQGRRASTARGYLDQ-AKSRPNL-TIRTHAMT 222
Query: 183 KVIINDQNVATGVEYVNSKGET-VRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVK 241
II D A GVE++ R TANKEV+L AGAIA+ Q+L SG+G L E
Sbjct: 223 DHIIFDGKRAVGVEWLEGDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFD 282
Query: 242 IPVKQDLR-VGENLK------LNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSN 294
IP+ +L VGENL+ L + PV + P + ++ ++L G +
Sbjct: 283 IPLVHELPGVGENLQDHLEMYLQYECKEPVSLY--PALQWWNQPKIGAEWLFGGTG-VGA 339
Query: 295 AGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRT 354
+ + G+I + + A P+++ H L N N + + F V
Sbjct: 340 SNHFEAGGFIRSREEFAWPNIQYHFLPVAIN--YNGSNAVKEHGFQCHVG---------- 387
Query: 355 DMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEA 414
S+ +P S G V +KS DP P I +S +D E +A
Sbjct: 388 -------SMRSP-SRGHVRIKSRDPHQHPAILFNYMSHEQDWQ------------EFRDA 427
Query: 415 IRLAGGTLMSLNLEACSQYPWRSTHSWT-C--------YIRHLTTTTSNPVGTVMMGNAD 465
IR+ T ++ A QY R T C ++R+ T +P GT MG
Sbjct: 428 IRI---TREIMHQPALDQYRGREISPGTECQTDEQLDEFVRNHAETAFHPCGTCKMGY-- 482
Query: 466 DPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSYNIP 521
D +VV + +V G++GLRV D S++P I +A + MIGEK AD+++ +P
Sbjct: 483 DEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADMIRGQEALP 538
>sp|B7M2V5|BETA_ECO8A Choline dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=betA
PE=3 SV=1
Length = 556
Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 164/536 (30%), Positives = 241/536 (44%), Gaps = 71/536 (13%)
Query: 5 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 64
L ++ AY EP F + N R++ GKGLGGSS + + Y RG + D +N+A+
Sbjct: 55 LQGKRYNWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQE 110
Query: 65 -GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSA 123
G W Y + L Y+ K+E R V N+ HG G + V K N + + E
Sbjct: 111 PGLENWSYLDCLPYYRKAET-RDVGEND---YHGGDGPVSVTTSKPGVNPLFEAMIEAGV 166
Query: 124 QELGYPCPKDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 182
Q GYP D+N Y GF + +T G R S A YL A R NL ++ +T
Sbjct: 167 Q-AGYPRTDDLNG-YQQEGFGPMDRTVTPQGRRASTARGYLDQ-AKSRPNL-TIRTHAMT 222
Query: 183 KVIINDQNVATGVEYVNSKGET-VRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVK 241
II D A GVE++ R TANKEV+L AGAIA+ Q+L SG+G L E
Sbjct: 223 DHIIFDGKRAVGVEWLEGDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFD 282
Query: 242 IPVKQDLR-VGENLK------LNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSN 294
IP+ +L VGENL+ L + PV + P + ++ ++L G +
Sbjct: 283 IPLVHELPGVGENLQDHLEMYLQYECKEPVSLY--PALQWWNQPKIGAEWLFGGTG-VGA 339
Query: 295 AGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRT 354
+ + G+I + + A P+++ H L N N + + F V
Sbjct: 340 SNHFEAGGFIRSREEFAWPNIQYHFLPVAIN--YNGSNAVKEHGFQCHVG---------- 387
Query: 355 DMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEA 414
S+ +P S G V +KS DP P I +S +D E +A
Sbjct: 388 -------SMRSP-SRGHVRIKSRDPHQHPAILFNYMSHEQDWQ------------EFRDA 427
Query: 415 IRLAGGTLMSLNLEACSQYPWRSTHSWT-C--------YIRHLTTTTSNPVGTVMMGNAD 465
IR+ T ++ A QY R T C ++R+ T +P GT MG
Sbjct: 428 IRI---TREIMHQPALDQYRGREISPGTECQTDEQLDEFVRNHAETAFHPCGTCKMGY-- 482
Query: 466 DPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSYNIP 521
D +VV + +V G++GLRV D S++P I +A + MIGEK AD+++ +P
Sbjct: 483 DEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADMIRGQEALP 538
>sp|B7L439|BETA_ECO55 Choline dehydrogenase OS=Escherichia coli (strain 55989 / EAEC)
GN=betA PE=3 SV=1
Length = 556
Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 164/536 (30%), Positives = 241/536 (44%), Gaps = 71/536 (13%)
Query: 5 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 64
L ++ AY EP F + N R++ GKGLGGSS + + Y RG + D +N+A+
Sbjct: 55 LQGKRYNWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQE 110
Query: 65 -GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSA 123
G W Y + L Y+ K+E R V N+ HG G + V K N + + E
Sbjct: 111 PGLENWSYLDCLPYYRKAET-RDVGEND---YHGGDGPVSVTTSKPGVNPLFEAMIEAGV 166
Query: 124 QELGYPCPKDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 182
Q GYP D+N Y GF + +T G R S A YL A R NL ++ +T
Sbjct: 167 Q-AGYPRTDDLNG-YQQEGFGPMDRTVTPQGRRASTARGYLDQ-AKSRPNL-TIRTHAMT 222
Query: 183 KVIINDQNVATGVEYVNSKGET-VRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVK 241
II D A GVE++ R TANKEV+L AGAIA+ Q+L SG+G L E
Sbjct: 223 DHIIFDGKRAVGVEWLEGDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFD 282
Query: 242 IPVKQDLR-VGENLK------LNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSN 294
IP+ +L VGENL+ L + PV + P + ++ ++L G +
Sbjct: 283 IPLVHELPGVGENLQDHLEMYLQYECKEPVSLY--PALQWWNQPKIGAEWLFGGTG-VGA 339
Query: 295 AGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRT 354
+ + G+I + + A P+++ H L N N + + F V
Sbjct: 340 SNHFEAGGFIRSREEFAWPNIQYHFLPVAIN--YNGSNAVKEHGFQCHVG---------- 387
Query: 355 DMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEA 414
S+ +P S G V +KS DP P I +S +D E +A
Sbjct: 388 -------SMRSP-SRGHVRIKSRDPHQHPAILFNYMSHEQDWQ------------EFRDA 427
Query: 415 IRLAGGTLMSLNLEACSQYPWRSTHSWT-C--------YIRHLTTTTSNPVGTVMMGNAD 465
IR+ T ++ A QY R T C ++R+ T +P GT MG
Sbjct: 428 IRI---TREIMHQPALDQYRGREISPGTECQTDEQLDEFVRNHAETAFHPCGTCKMGY-- 482
Query: 466 DPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSYNIP 521
D +VV + +V G++GLRV D S++P I +A + MIGEK AD+++ +P
Sbjct: 483 DEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADMIRGQEALP 538
>sp|A7ZI50|BETA_ECO24 Choline dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A
/ ETEC) GN=betA PE=3 SV=1
Length = 556
Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 164/536 (30%), Positives = 241/536 (44%), Gaps = 71/536 (13%)
Query: 5 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 64
L ++ AY EP F + N R++ GKGLGGSS + + Y RG + D +N+A+
Sbjct: 55 LQGKRYNWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQE 110
Query: 65 -GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSA 123
G W Y + L Y+ K+E R V N+ HG G + V K N + + E
Sbjct: 111 PGLENWSYLDCLPYYRKAET-RDVGEND---YHGGDGPVSVTTSKPGVNPLFEAMIEAGV 166
Query: 124 QELGYPCPKDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 182
Q GYP D+N Y GF + +T G R S A YL A R NL ++ +T
Sbjct: 167 Q-AGYPRTDDLNG-YQQEGFGPMDRTVTPQGRRASTARGYLDQ-AKSRPNL-TIRTHAMT 222
Query: 183 KVIINDQNVATGVEYVNSKGET-VRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVK 241
II D A GVE++ R TANKEV+L AGAIA+ Q+L SG+G L E
Sbjct: 223 DHIIFDGKRAVGVEWLEGDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFD 282
Query: 242 IPVKQDLR-VGENLK------LNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSN 294
IP+ +L VGENL+ L + PV + P + ++ ++L G +
Sbjct: 283 IPLVHELPGVGENLQDHLEMYLQYECKEPVSLY--PALQWWNQPKIGAEWLFGGTG-VGA 339
Query: 295 AGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRT 354
+ + G+I + + A P+++ H L N N + + F V
Sbjct: 340 SNHFEAGGFIRSREEFAWPNIQYHFLPVAIN--YNGSNAVKEHGFQCHVG---------- 387
Query: 355 DMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEA 414
S+ +P S G V +KS DP P I +S +D E +A
Sbjct: 388 -------SMRSP-SRGHVRIKSRDPHQHPAILFNYMSHEQDWQ------------EFRDA 427
Query: 415 IRLAGGTLMSLNLEACSQYPWRSTHSWT-C--------YIRHLTTTTSNPVGTVMMGNAD 465
IR+ T ++ A QY R T C ++R+ T +P GT MG
Sbjct: 428 IRI---TREIMHQPALDQYRGREISPGTECQTDEQLDEFVRNHAETAFHPCGTCKMGY-- 482
Query: 466 DPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSYNIP 521
D +VV + +V G++GLRV D S++P I +A + MIGEK AD+++ +P
Sbjct: 483 DEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADMIRGQEALP 538
>sp|A6T613|BETA_KLEP7 Choline dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae
(strain ATCC 700721 / MGH 78578) GN=betA PE=3 SV=1
Length = 554
Score = 163 bits (413), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 165/530 (31%), Positives = 242/530 (45%), Gaps = 59/530 (11%)
Query: 5 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAK- 63
L ++ AY EP + + N R++ GKGLGGSS + + Y RG + D +N+AK
Sbjct: 55 LQGKRYNWAYETEPEPY----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLDNWAKE 110
Query: 64 LGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSA 123
G W Y + L Y+ K+E R + N+ HG G + V K N + + E
Sbjct: 111 PGLEHWSYLDCLPYYRKAET-RDIGPND---YHGGDGPVSVTTPKPGNNPLFEAMVEAGV 166
Query: 124 QELGYPCPKDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 182
Q GYP D+N Y GF + +T G R S A YL G R NL ++ +T
Sbjct: 167 Q-AGYPRTDDLNG-YQQEGFGPMDRTVTPQGRRASTARGYLDQARG-RPNL-TIRTHALT 222
Query: 183 KVIINDQNVATGVEYVNSKGETV---RVTANKEVILTAGAIANAQLLLLSGIGPKAHLDE 239
II A GVE++ +GE+ + TANKEV+L AGAIA+ Q+L SG+G L +
Sbjct: 223 DHIIFAGKRAVGVEWL--EGESTIPSKATANKEVLLCAGAIASPQILQRSGVGNPELLRQ 280
Query: 240 VKIPVKQDLR-VGENLK------LNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPL 292
IPV DL VGENL+ L + PV + P + ++ ++L G +
Sbjct: 281 FDIPVVHDLPGVGENLQDHLEMYLQYECKEPVSLY--PALQWWNQPKIGAEWLFGGTG-I 337
Query: 293 SNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNK 352
+ + G+I + A P+++ H L N N + + F V
Sbjct: 338 GASNQFEAGGFIRSRAEFAWPNIQYHFLPVAIN--YNGSNAVKEHGFQCHVG-------- 387
Query: 353 RTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITR-LEQ 411
S+ +P S G V LKS DP A P I +S +D R ITR +
Sbjct: 388 ---------SMRSP-SRGHVRLKSRDPHAHPAILFNYMSHEQDWQEF-RDAIRITREIMN 436
Query: 412 TEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVV 471
A+ G +S +E +S ++R+ T +P GT MG D AVV
Sbjct: 437 QPALDKYRGREISPGIEC------QSDAELDEFVRNHAETAFHPCGTCKMGY--DEMAVV 488
Query: 472 TPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSYNIP 521
+ +V G++GLRV D S++P I +A + MIGEK AD ++ +P
Sbjct: 489 DGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKMADAIRGRQPLP 538
>sp|B7UJG4|BETA_ECO27 Choline dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69
/ EPEC) GN=betA PE=3 SV=1
Length = 556
Score = 163 bits (412), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 157/527 (29%), Positives = 235/527 (44%), Gaps = 53/527 (10%)
Query: 5 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 64
L ++ AY EP F + N R++ GKGLGGSS + + Y RG + D +N+A+
Sbjct: 55 LQGKRYNWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQE 110
Query: 65 -GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSA 123
G W Y + L Y+ K+E R V N+ HG G + V K N + + E
Sbjct: 111 PGLENWSYLDCLPYYRKAET-RDVGEND---YHGGDGPVSVITSKPGVNPLFEAMIEAGM 166
Query: 124 QELGYPCPKDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 182
Q GYP D+N Y GF + +T +G R S A YL A R NL ++ +T
Sbjct: 167 Q-AGYPRTDDLNG-YQQEGFGPMDRTVTPHGRRASTARGYLDQ-AKSRPNL-TIRTHAMT 222
Query: 183 KVIINDQNVATGVEYVNSKGET-VRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVK 241
II D A GVE++ R ANKEV+L AGAIA+ Q+L SG+G L E
Sbjct: 223 DHIIFDGKRAVGVEWLEGDSTIPTRAAANKEVLLCAGAIASPQILQRSGVGNAELLAEFD 282
Query: 242 IPVKQDLR-VGENLK------LNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSN 294
IP+ +L VGENL+ L + PV + P + + ++L G +
Sbjct: 283 IPLVHELPGVGENLQDHLEMYLQYECKEPVSLY--PALQWWNQPRIGAEWLFGGTG-VGA 339
Query: 295 AGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRT 354
+ + G+I + + A P+++ H L N N + + F V
Sbjct: 340 SNHFEAGGFIRSREEFAWPNIQYHFLPVAIN--YNGSNAVKEHGFQCHVG---------- 387
Query: 355 DMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEA 414
S+ +P S G V +KS DP P I +S +D + A
Sbjct: 388 -------SMRSP-SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRTTREIMHQPA 439
Query: 415 IRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPD 474
+ G +S +E ++ ++R+ T +P GT MG D AVV +
Sbjct: 440 LDQYRGREISPGVEC------QTDEQLDEFVRNHAETAFHPCGTCKMGY--DEMAVVDGE 491
Query: 475 LKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSYNIP 521
+V G++GLRV D S++P I +A + MIGEK AD+++ +P
Sbjct: 492 GRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADMIRGKEALP 538
>sp|Q3K5H3|BETA_PSEPF Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf0-1)
GN=betA PE=3 SV=1
Length = 567
Score = 162 bits (411), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 157/529 (29%), Positives = 236/529 (44%), Gaps = 57/529 (10%)
Query: 5 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 64
L ++ AY +P + R++ GKGLGGSS + + Y RG + DY+ +AKL
Sbjct: 57 LQGRRYNWAYETDPEPH----MDGRRMECGRGKGLGGSSLINGMCYIRGNAMDYDGWAKL 112
Query: 65 -GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSA 123
G W Y + L YF K+E R + N+ HG G + V K N + + E
Sbjct: 113 PGLEDWSYLDCLPYFRKAET-RDIGPND---YHGGDGPVSVTTPKAGNNPLFHAMVEAGV 168
Query: 124 QELGYPCPKDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 182
Q GYP +D+N Y GF + +T G R S A YL +A KR+ L ++ +
Sbjct: 169 Q-AGYPRTEDLNG-YQQEGFGPMDRTVTPNGRRASTARGYLD-VAKKRSTLTIVTHALTD 225
Query: 183 KVIINDQNVATGVEY-VNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVK 241
KV+ + A GV Y V + E V A KEVI+ +GAIA+ QLL SG+GP L+ +
Sbjct: 226 KVLFEGKR-AVGVRYLVGAAEERVEARARKEVIVCSGAIASPQLLQRSGVGPAKLLESLD 284
Query: 242 IPVKQDLR-VGENLK------LNAQFTGPVMAFSAPLKRTVYSQEMV-FKYLVNRIGPLS 293
IPV DL VGENL+ L T PV + + L Y+Q + ++L N G +
Sbjct: 285 IPVVHDLPGVGENLQDHLELYLQYACTQPVSLYPSLL---WYNQPAIGAEWLFNGTG-IG 340
Query: 294 NAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKR 353
+ + G+I T P+++ H L V Y N
Sbjct: 341 ASNQFEAGGFIRTRPEFEWPNIQYHFL---------------------PVAINYNGSNGV 379
Query: 354 TDMGVIS-MSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQT 412
+ G + M + S G+V +KS DP P I ++ +D G + Q
Sbjct: 380 KEHGFQAHMGSMRSPSRGRVQVKSKDPRQHPSILFNYMATEQDWQEFRDGIRLTREIMQQ 439
Query: 413 EAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVT 472
A+ G +S +E ++ +IR T +P + MG D AVV
Sbjct: 440 PALDAFRGREISPGIEV------QTDEQLDKFIREHAETAFHPSCSCKMGTDD--MAVVD 491
Query: 473 PDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSYNIP 521
+ +V G++GLRV D S++P +A + M+ EK AD ++ +P
Sbjct: 492 GEGRVHGMQGLRVVDASIMPIITTGNLNAPTIMMAEKIADKIRGRQPLP 540
>sp|Q1RFM3|BETA_ECOUT Choline dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC)
GN=betA PE=3 SV=2
Length = 562
Score = 162 bits (411), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 160/528 (30%), Positives = 239/528 (45%), Gaps = 55/528 (10%)
Query: 5 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 64
L ++ AY EP F + N R++ GKGLGGSS + + Y RG + D +N+A+
Sbjct: 55 LQGKRYNWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQE 110
Query: 65 -GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSA 123
G W Y + L Y+ K+E R V N+ HG G + V K N + + E
Sbjct: 111 PGLENWSYLDCLPYYRKAET-RDVGEND---YHGGDGPVSVTTSKPGVNPLFEAMIEAGV 166
Query: 124 QELGYPCPKDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 182
Q GYP D+N Y GF + +T +G R S A YL A R NL ++ +T
Sbjct: 167 Q-AGYPRTDDLNG-YQQEGFGPMDRTVTPHGRRASTARGYLDQ-AKSRPNL-TIRTHAMT 222
Query: 183 KVIINDQNVATGVEYVNSKGET-VRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVK 241
I D A GVE++ R ANKEV+L AGAIA+ Q+L SG+G L E
Sbjct: 223 DHIFFDGKRAVGVEWLEGDSTIPTRAAANKEVLLCAGAIASPQILQRSGVGNAELLAEFD 282
Query: 242 IPVKQDLR-VGENLK------LNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSN 294
IP+ +L VGENL+ L + PV + P + ++ ++L G +
Sbjct: 283 IPLVHELPGVGENLQDHLEMYLQYECKEPVSLY--PALQWWNQPKIGAEWLFGGTG-VGA 339
Query: 295 AGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRT 354
+ + G+I + + A P+++ H L N N + + F V
Sbjct: 340 SNHFEAGGFIRSREEFAWPNIQYHFLPVAIN--YNGSNAVKEHGFQCHVG---------- 387
Query: 355 DMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITR-LEQTE 413
S+ +P S G V +KS DP P I +S +D R ITR +
Sbjct: 388 -------SMRSP-SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEF-RDAIRITREIMHQP 438
Query: 414 AIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTP 473
A+ G +S +E ++ ++R+ T +P GT MG D AVV
Sbjct: 439 ALDQYRGREISPGVEC------QTDEQLDEFVRNHAETAFHPCGTCKMGY--DEMAVVDA 490
Query: 474 DLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSYNIP 521
+ +V G++GLRV D S++P I +A + MIGEK AD+++ +P
Sbjct: 491 EGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKMADMIRGKDALP 538
>sp|B7MCD0|BETA_ECO45 Choline dehydrogenase OS=Escherichia coli O45:K1 (strain S88 /
ExPEC) GN=betA PE=3 SV=1
Length = 562
Score = 162 bits (411), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 160/528 (30%), Positives = 239/528 (45%), Gaps = 55/528 (10%)
Query: 5 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 64
L ++ AY EP F + N R++ GKGLGGSS + + Y RG + D +N+A+
Sbjct: 55 LQGKRYNWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQE 110
Query: 65 -GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSA 123
G W Y + L Y+ K+E R V N+ HG G + V K N + + E
Sbjct: 111 PGLENWSYLDCLPYYRKAET-RDVGEND---YHGGDGPVSVTTSKPGVNPLFEAMIEAGV 166
Query: 124 QELGYPCPKDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 182
Q GYP D+N Y GF + +T +G R S A YL A R NL ++ +T
Sbjct: 167 Q-AGYPRTDDLNG-YQQEGFGPMDRTVTPHGRRASTARGYLDQ-AKSRPNL-TIRTHAMT 222
Query: 183 KVIINDQNVATGVEYVNSKGET-VRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVK 241
I D A GVE++ R ANKEV+L AGAIA+ Q+L SG+G L E
Sbjct: 223 DHIFFDGKRAVGVEWLEGDSTIPTRAAANKEVLLCAGAIASPQILQRSGVGNAELLAEFD 282
Query: 242 IPVKQDLR-VGENLK------LNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSN 294
IP+ +L VGENL+ L + PV + P + ++ ++L G +
Sbjct: 283 IPLVHELPGVGENLQDHLEMYLQYECKEPVSLY--PALQWWNQPKIGAEWLFGGTG-VGA 339
Query: 295 AGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRT 354
+ + G+I + + A P+++ H L N N + + F V
Sbjct: 340 SNHFEAGGFIRSREEFAWPNIQYHFLPVAIN--YNGSNAVKEHGFQCHVG---------- 387
Query: 355 DMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITR-LEQTE 413
S+ +P S G V +KS DP P I +S +D R ITR +
Sbjct: 388 -------SMRSP-SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEF-RDAIRITREIMHQP 438
Query: 414 AIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTP 473
A+ G +S +E ++ ++R+ T +P GT MG D AVV
Sbjct: 439 ALDQYRGREISPGVEC------QTDEQLDEFVRNHAETAFHPCGTCKMGY--DEMAVVDA 490
Query: 474 DLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSYNIP 521
+ +V G++GLRV D S++P I +A + MIGEK AD+++ +P
Sbjct: 491 EGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKMADMIRGKDALP 538
>sp|Q0T7N0|BETA_SHIF8 Choline dehydrogenase OS=Shigella flexneri serotype 5b (strain
8401) GN=betA PE=3 SV=1
Length = 556
Score = 162 bits (411), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 160/522 (30%), Positives = 238/522 (45%), Gaps = 55/522 (10%)
Query: 5 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 64
L ++ AY EP F + N R++ GKGLGGSS + + Y RG + D +N+A+
Sbjct: 55 LQGKRYNWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQE 110
Query: 65 -GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSA 123
G W Y + L Y+ K+E R V N+ HG G + V K N + + E
Sbjct: 111 PGLENWSYLDCLPYYRKAET-RDVGEND---YHGGDGPVSVTTSKPGVNPLFEAMIEAGV 166
Query: 124 QELGYPCPKDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 182
Q GYP D+N Y GF + +T G R S A YL A R NL ++ +T
Sbjct: 167 Q-AGYPRTDDLNG-YQQEGFGPMDRTVTPQGRRASTARGYLDQ-AKSRPNL-TIRTHAMT 222
Query: 183 KVIINDQNVATGVEYVNSKGET-VRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVK 241
II D A GVE++ R TANKEV+L AGAIA+ Q+L SG+G L E
Sbjct: 223 DHIIFDGKRAVGVEWLEGDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFD 282
Query: 242 IPVKQDLR-VGENLK------LNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSN 294
IP+ +L VGENL+ L + PV + P + ++ ++L G +
Sbjct: 283 IPLVHELPGVGENLQDHLEMYLQYECKEPVSLY--PALQWWNQPKIGAEWLFGGTG-VGA 339
Query: 295 AGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRT 354
+ + G+I + + A P+++ H L N N + + F V
Sbjct: 340 SNHFEAGGFIRSREEFAWPNIQYHFLPVAIN--YNGSNAVKEHGFQCHVG---------- 387
Query: 355 DMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITR-LEQTE 413
S+ +P S G V +KS DP P I +S +D R ITR +
Sbjct: 388 -------SMRSP-SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEF-RDAIRITREIMHQP 438
Query: 414 AIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTP 473
A+ G +S +E ++ ++R+ T +P GT MG D +VV
Sbjct: 439 ALDQYRGREISPGVEC------QTDEQLDEFVRNHAETAFHPCGTCKMGY--DEMSVVDG 490
Query: 474 DLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVK 515
+ +V G++GLRV D S++P I +A + MIGEK AD+++
Sbjct: 491 EGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADMIR 532
>sp|P17444|BETA_ECOLI Choline dehydrogenase OS=Escherichia coli (strain K12) GN=betA PE=1
SV=1
Length = 556
Score = 162 bits (411), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 160/528 (30%), Positives = 240/528 (45%), Gaps = 55/528 (10%)
Query: 5 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 64
L ++ AY EP F + N R++ GKGLGGSS + + Y RG + D +N+A+
Sbjct: 55 LQGKRYNWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQE 110
Query: 65 -GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSA 123
G W Y + L Y+ K+E R + N+ HG G + V K N + + E
Sbjct: 111 PGLENWSYLDCLPYYRKAET-RDMGEND---YHGGDGPVSVTTSKPGVNPLFEAMIEAGV 166
Query: 124 QELGYPCPKDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 182
Q GYP D+N Y GF + +T G R S A YL A R NL ++ +T
Sbjct: 167 Q-AGYPRTDDLNG-YQQEGFGPMDRTVTPQGRRASTARGYLDQ-AKSRPNL-TIRTHAMT 222
Query: 183 KVIINDQNVATGVEYVNSKGE-TVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVK 241
II D A GVE++ R TANKEV+L AGAIA+ Q+L SG+G L E
Sbjct: 223 DHIIFDGKRAVGVEWLEGDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFD 282
Query: 242 IPVKQDLR-VGENLK------LNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSN 294
IP+ +L VGENL+ L + PV + P + ++ ++L G +
Sbjct: 283 IPLVHELPGVGENLQDHLEMYLQYECKEPVSLY--PALQWWNQPKIGAEWLFGGTG-VGA 339
Query: 295 AGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRT 354
+ + G+I + + A P+++ H L N N + + F V
Sbjct: 340 SNHFEAGGFIRSREEFAWPNIQYHFLPVAIN--YNGSNAVKEHGFQCHVG---------- 387
Query: 355 DMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITR-LEQTE 413
S+ +P S G V +KS DP P I +S +D R ITR +
Sbjct: 388 -------SMRSP-SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEF-RDAIRITREIMHQP 438
Query: 414 AIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTP 473
A+ G +S +E ++ ++R+ T +P GT MG D +VV
Sbjct: 439 ALDQYRGREISPGVEC------QTDEQLDEFVRNHAETAFHPCGTCKMGY--DEMSVVDG 490
Query: 474 DLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSYNIP 521
+ +V G++GLRV D S++P I +A + MIGEK AD+++ +P
Sbjct: 491 EGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADMIRGQEALP 538
>sp|B1J0W6|BETA_ECOLC Choline dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM
1576 / Crooks) GN=betA PE=3 SV=1
Length = 556
Score = 162 bits (411), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 160/528 (30%), Positives = 240/528 (45%), Gaps = 55/528 (10%)
Query: 5 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 64
L ++ AY EP F + N R++ GKGLGGSS + + Y RG + D +N+A+
Sbjct: 55 LQGKRYNWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQE 110
Query: 65 -GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSA 123
G W Y + L Y+ K+E R + N+ HG G + V K N + + E
Sbjct: 111 PGLENWSYLDCLPYYRKAET-RDMGEND---YHGGDGPVSVTTSKPGVNPLFEAMIEAGV 166
Query: 124 QELGYPCPKDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 182
Q GYP D+N Y GF + +T G R S A YL A R NL ++ +T
Sbjct: 167 Q-AGYPRTDDLNG-YQQEGFGPMDRTVTPQGRRASTARGYLDQ-AKSRPNL-TIRTHAMT 222
Query: 183 KVIINDQNVATGVEYVNSKGE-TVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVK 241
II D A GVE++ R TANKEV+L AGAIA+ Q+L SG+G L E
Sbjct: 223 DHIIFDGKRAVGVEWLEGDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFD 282
Query: 242 IPVKQDLR-VGENLK------LNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSN 294
IP+ +L VGENL+ L + PV + P + ++ ++L G +
Sbjct: 283 IPLVHELPGVGENLQDHLEMYLQYECKEPVSLY--PALQWWNQPKIGAEWLFGGTG-VGA 339
Query: 295 AGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRT 354
+ + G+I + + A P+++ H L N N + + F V
Sbjct: 340 SNHFEAGGFIRSREEFAWPNIQYHFLPVAIN--YNGSNAVKEHGFQCHVG---------- 387
Query: 355 DMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITR-LEQTE 413
S+ +P S G V +KS DP P I +S +D R ITR +
Sbjct: 388 -------SMRSP-SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEF-RDAIRITREIMHQP 438
Query: 414 AIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTP 473
A+ G +S +E ++ ++R+ T +P GT MG D +VV
Sbjct: 439 ALDQYRGREISPGVEC------QTDEQLDEFVRNHAETAFHPCGTCKMGY--DEMSVVDG 490
Query: 474 DLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSYNIP 521
+ +V G++GLRV D S++P I +A + MIGEK AD+++ +P
Sbjct: 491 EGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADMIRGQEALP 538
>sp|B1XE52|BETA_ECODH Choline dehydrogenase OS=Escherichia coli (strain K12 / DH10B)
GN=betA PE=3 SV=1
Length = 556
Score = 162 bits (411), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 160/528 (30%), Positives = 240/528 (45%), Gaps = 55/528 (10%)
Query: 5 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 64
L ++ AY EP F + N R++ GKGLGGSS + + Y RG + D +N+A+
Sbjct: 55 LQGKRYNWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQE 110
Query: 65 -GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSA 123
G W Y + L Y+ K+E R + N+ HG G + V K N + + E
Sbjct: 111 PGLENWSYLDCLPYYRKAET-RDMGEND---YHGGDGPVSVTTSKPGVNPLFEAMIEAGV 166
Query: 124 QELGYPCPKDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 182
Q GYP D+N Y GF + +T G R S A YL A R NL ++ +T
Sbjct: 167 Q-AGYPRTDDLNG-YQQEGFGPMDRTVTPQGRRASTARGYLDQ-AKSRPNL-TIRTHAMT 222
Query: 183 KVIINDQNVATGVEYVNSKGE-TVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVK 241
II D A GVE++ R TANKEV+L AGAIA+ Q+L SG+G L E
Sbjct: 223 DHIIFDGKRAVGVEWLEGDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFD 282
Query: 242 IPVKQDLR-VGENLK------LNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSN 294
IP+ +L VGENL+ L + PV + P + ++ ++L G +
Sbjct: 283 IPLVHELPGVGENLQDHLEMYLQYECKEPVSLY--PALQWWNQPKIGAEWLFGGTG-VGA 339
Query: 295 AGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRT 354
+ + G+I + + A P+++ H L N N + + F V
Sbjct: 340 SNHFEAGGFIRSREEFAWPNIQYHFLPVAIN--YNGSNAVKEHGFQCHVG---------- 387
Query: 355 DMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITR-LEQTE 413
S+ +P S G V +KS DP P I +S +D R ITR +
Sbjct: 388 -------SMRSP-SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEF-RDAIRITREIMHQP 438
Query: 414 AIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTP 473
A+ G +S +E ++ ++R+ T +P GT MG D +VV
Sbjct: 439 ALDQYRGREISPGVEC------QTDEQLDEFVRNHAETAFHPCGTCKMGY--DEMSVVDG 490
Query: 474 DLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSYNIP 521
+ +V G++GLRV D S++P I +A + MIGEK AD+++ +P
Sbjct: 491 EGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADMIRGQEALP 538
>sp|Q1IG70|BETA_PSEE4 Choline dehydrogenase OS=Pseudomonas entomophila (strain L48)
GN=betA PE=3 SV=1
Length = 565
Score = 162 bits (411), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 155/529 (29%), Positives = 237/529 (44%), Gaps = 57/529 (10%)
Query: 5 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 64
L ++ AY +P F + R++ GKGLGGSS + + Y RG + D++ +A+L
Sbjct: 57 LQGRRYNWAYETDPEPF----MDGRRMECGRGKGLGGSSLINGMCYIRGNAMDFDGWAEL 112
Query: 65 -GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSA 123
G W Y + L YF K+E R + N+ HG +G + V K N + + E
Sbjct: 113 PGLEDWTYLDCLPYFRKAET-RDIGPND---YHGGEGPVSVATPKAGNNPLFHAMVEAGV 168
Query: 124 QELGYPCPKDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 182
Q GYP +D+N Y GF + +T+ G R S A YL A KR NL ++ +
Sbjct: 169 Q-AGYPRTEDLNG-YQQEGFGPMDRSVTKKGRRSSTARGYLDQ-AKKRPNLTIVTHALSD 225
Query: 183 KVIINDQNVATGVEY-VNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVK 241
+V+ D A GV Y V E V A KEVI+++GAIA+ QLL SG+GP+A L+ +
Sbjct: 226 RVLF-DGKRAVGVTYLVGDSEERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLD 284
Query: 242 IPVKQDLR-VGENLK------LNAQFTGPVMAFSAPLKRTVYSQEMV-FKYLVNRIGPLS 293
IPV DL VGENL+ L T PV + + L ++Q + ++L N G +
Sbjct: 285 IPVVHDLPGVGENLQDHLELYLQYACTQPVSLYPSLL---WWNQPAIGAEWLFNGTG-IG 340
Query: 294 NAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKR 353
+ + G+I T P+++ H L V Y N
Sbjct: 341 ASNQFEAGGFIRTRPEFKWPNIQYHFL---------------------PVAINYNGSNGV 379
Query: 354 TDMGVIS-MSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQT 412
+ G + M + + G++ KS DP P I +S +D G +
Sbjct: 380 KEHGFQAHMGSMRSPARGRIQAKSKDPRQHPSILFNYMSTEQDWQEFRDGIRLTREIMAQ 439
Query: 413 EAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVT 472
A+ G +S ++ +IR T +P + MG D AVV
Sbjct: 440 PALDAFRGREISPGAHV------QTDEELDKFIREHAETAFHPSCSCKMGTDD--MAVVD 491
Query: 473 PDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSYNIP 521
+ +V G++GLRV D S++P I +A + MI EK +D ++ +P
Sbjct: 492 GEGRVHGMQGLRVVDASIMPLIITGNLNATTIMIAEKISDKIRGRKPLP 540
>sp|B1LIJ7|BETA_ECOSM Choline dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC)
GN=betA PE=3 SV=1
Length = 562
Score = 162 bits (409), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 159/528 (30%), Positives = 240/528 (45%), Gaps = 55/528 (10%)
Query: 5 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 64
L ++ AY EP F + N R++ GKGLGGSS + + Y RG + D +N+A+
Sbjct: 55 LQGKRYNWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQE 110
Query: 65 -GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSA 123
G W Y + L Y+ K+E R V N+ HG G + V K N + + E
Sbjct: 111 PGLENWSYLDCLPYYRKAET-RDVGEND---YHGGDGPVSVTTSKPGVNPLFEAMIEAGV 166
Query: 124 QELGYPCPKDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 182
Q GYP D+N Y GF + +T +G R S A YL A R+NL ++ +T
Sbjct: 167 Q-AGYPRTDDLNG-YQQEGFGPMDRTVTPHGRRASTARGYLDQ-AKSRSNL-TIRTHAMT 222
Query: 183 KVIINDQNVATGVEYVNSKGET-VRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVK 241
II D A GVE++ R ANKEV+L AGAIA+ Q+L SG+G L E
Sbjct: 223 DHIIFDGKRAVGVEWLEGDSTIPTRAAANKEVLLCAGAIASPQILQRSGVGNAGLLAEFD 282
Query: 242 IPVKQDLR-VGENLK------LNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSN 294
IP+ +L VGENL+ L + PV + P + ++ ++L G +
Sbjct: 283 IPLVHELPGVGENLQDHLEMYLQYECKEPVSLY--PALQWWNQPKIGAEWLFGGTG-IGA 339
Query: 295 AGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRT 354
+ + G+I + + A P+++ H L N N + + F V
Sbjct: 340 SNHFEAGGFIRSREEFAWPNIQYHFLPVAIN--YNGSNAVKEHGFQCHVG---------- 387
Query: 355 DMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITR-LEQTE 413
S+ +P S G V +KS P P I +S +D R ITR +
Sbjct: 388 -------SMRSP-SRGHVRIKSRAPHQHPAILFNYMSHEQDWQEF-RDAIRITREIMHQP 438
Query: 414 AIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTP 473
A+ G +S +E ++ ++R+ T +P GT MG D +VV
Sbjct: 439 ALDQYHGREISPGVEC------QTDEQLDEFVRNHAETAFHPCGTCKMGY--DEMSVVDG 490
Query: 474 DLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSYNIP 521
+ +V G++GLRV D S++P I +A + MIGEK AD+++ +P
Sbjct: 491 EGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKMADMIRGKDALP 538
>sp|Q0TKW1|BETA_ECOL5 Choline dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 /
UPEC) GN=betA PE=3 SV=2
Length = 556
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 160/528 (30%), Positives = 239/528 (45%), Gaps = 55/528 (10%)
Query: 5 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 64
L ++ AY EP F + N R++ GKGLGGSS + + Y RG + D +N+A+
Sbjct: 55 LQGKRYNWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQE 110
Query: 65 -GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSA 123
G W Y + L Y+ K+E R V N+ HG G + V K N + + E
Sbjct: 111 PGLENWSYLDCLPYYRKAET-RDVGEND---YHGGDGPVSVITSKPGVNPLFEAMIEAGM 166
Query: 124 QELGYPCPKDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 182
Q GYP D+N Y GF + +T +G R S + YL A R NL ++ +T
Sbjct: 167 Q-AGYPRTDDLNG-YQQEGFGPMDRTVTPHGRRASTSRGYLDQ-AKSRPNL-TIRTHAMT 222
Query: 183 KVIINDQNVATGVEYVNSKGET-VRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVK 241
II D A GVE++ R ANKEV+L AGAIA+ Q+L SG+G L E
Sbjct: 223 DHIIFDGKRAVGVEWLEGDSTIPTRAAANKEVLLCAGAIASPQILQRSGVGNAELLAEFD 282
Query: 242 IPVKQDLR-VGENLK------LNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSN 294
IP+ +L VGENL+ L + PV + P + + ++L G +
Sbjct: 283 IPLVHELPGVGENLQDHLEMYLQYECKEPVSLY--PALQWWNQPRIGAEWLFGGTG-VGA 339
Query: 295 AGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRT 354
+ + G+I + + A P+++ H L N N + + F V
Sbjct: 340 SNHFEAGGFIRSREEFAWPNIQYHFLPVAIN--YNGSNAVKEHGFQCHVG---------- 387
Query: 355 DMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITR-LEQTE 413
S+ +P S G V +KS DP P I +S +D R ITR +
Sbjct: 388 -------SMRSP-SRGHVRIKSRDPHQHPGILFNYMSHEQDWQEF-RDAIRITREIMHQP 438
Query: 414 AIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTP 473
A+ G +S +E ++ ++R+ T +P GT MG D AVV
Sbjct: 439 ALDQYRGREISPGVEC------QTDEQLDEFVRNHAETAFHPCGTCKMGY--DEMAVVDG 490
Query: 474 DLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSYNIP 521
+ +V G++GLRV D S++P I +A + MIGEK AD+++ +P
Sbjct: 491 EGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADMIRGKEALP 538
>sp|A5WA97|BETA_PSEP1 Choline dehydrogenase OS=Pseudomonas putida (strain F1 / ATCC
700007) GN=betA PE=3 SV=1
Length = 565
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 155/529 (29%), Positives = 236/529 (44%), Gaps = 57/529 (10%)
Query: 5 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 64
L ++ AY +P + + R++ GKGLGGSS + + Y RG + D++ +A+L
Sbjct: 57 LQGRRYNWAYETDPEPY----MDGRRMECGRGKGLGGSSLINGMCYIRGNAMDFDGWAEL 112
Query: 65 -GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSA 123
G W Y + L YF K+E R + N+ HG G + V K N + + E
Sbjct: 113 PGLEDWTYLDCLPYFRKAET-RDIGPND---YHGGDGPVSVATPKAGNNPLFHAMVEAGV 168
Query: 124 QELGYPCPKDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 182
Q GYP +D+N Y GF + +T+ G R S A YL A KR NL ++ +
Sbjct: 169 Q-AGYPRTEDLNG-YQQEGFGPMDRSVTKNGRRSSTARGYLDQ-AKKRPNLTIVTHALTD 225
Query: 183 KVIINDQNVATGVEY-VNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVK 241
+V+ D A GV Y V E V A KEVI+++GAIA+ QLL SG+GP+A L+ +
Sbjct: 226 RVLF-DGKRAVGVTYLVGDSEERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLD 284
Query: 242 IPVKQDLR-VGENLK------LNAQFTGPVMAFSAPLKRTVYSQEMV-FKYLVNRIGPLS 293
IPV DL VGENL+ L T PV + + L ++Q + ++L N G +
Sbjct: 285 IPVVHDLPGVGENLQDHLELYLQYACTQPVSLYPSLL---WWNQPAIGAEWLFNGTG-IG 340
Query: 294 NAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKR 353
+ + G+I T P+++ H L V Y N
Sbjct: 341 ASNQFEAGGFIRTRPEFKWPNIQYHFL---------------------PVAINYNGSNGV 379
Query: 354 TDMGVIS-MSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQT 412
+ G + M + + G++ KS DP P I +S +D G +
Sbjct: 380 KEHGFQAHMGSMRSPARGRIQAKSKDPRQHPSILFNYMSTEQDWQEFRDGIRLTREIMAQ 439
Query: 413 EAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVT 472
A+ G +S ++ +IR T +P + MG D AVV
Sbjct: 440 PALDPYRGREISPGAHV------QTDEELDKFIREHAETAFHPSCSCKMGTDD--MAVVD 491
Query: 473 PDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSYNIP 521
+ +V G+KGLRV D S++P I +A + MI EK +D ++ +P
Sbjct: 492 GEGRVHGMKGLRVVDASIMPLIITGNLNATTIMIAEKISDKIRGRKPLP 540
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 188,684,274
Number of Sequences: 539616
Number of extensions: 7927387
Number of successful extensions: 20172
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 19473
Number of HSP's gapped (non-prelim): 302
length of query: 522
length of database: 191,569,459
effective HSP length: 122
effective length of query: 400
effective length of database: 125,736,307
effective search space: 50294522800
effective search space used: 50294522800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)