Query psy14407
Match_columns 522
No_of_seqs 134 out of 1182
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 19:04:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14407.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14407hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 100.0 1E-95 2E-100 746.8 38.6 507 3-519 104-617 (623)
2 TIGR01810 betA choline dehydro 100.0 1.7E-81 3.6E-86 670.7 46.4 470 7-518 54-530 (532)
3 PRK02106 choline dehydrogenase 100.0 1.8E-81 4E-86 673.9 46.3 470 7-520 60-537 (560)
4 COG2303 BetA Choline dehydroge 100.0 3.1E-72 6.8E-77 594.2 32.5 470 7-517 59-536 (542)
5 PLN02785 Protein HOTHEAD 100.0 9.5E-68 2.1E-72 562.9 39.3 452 7-518 103-580 (587)
6 TIGR02462 pyranose_ox pyranose 100.0 8.1E-51 1.8E-55 424.5 27.5 417 33-519 111-544 (544)
7 PF00732 GMC_oxred_N: GMC oxid 100.0 4.9E-46 1.1E-50 369.7 16.6 242 5-259 50-296 (296)
8 PF05199 GMC_oxred_C: GMC oxid 100.0 1.6E-34 3.5E-39 255.5 13.3 143 366-510 1-144 (144)
9 PRK12835 3-ketosteroid-delta-1 97.2 0.00071 1.5E-08 73.5 7.5 63 163-227 219-282 (584)
10 PRK12837 3-ketosteroid-delta-1 97.1 0.0013 2.9E-08 70.4 7.8 63 162-227 179-241 (513)
11 PRK07843 3-ketosteroid-delta-1 96.9 0.0022 4.8E-08 69.4 7.2 59 169-229 219-277 (557)
12 PRK12844 3-ketosteroid-delta-1 96.7 0.0035 7.7E-08 67.8 7.5 57 169-227 219-275 (557)
13 PRK07121 hypothetical protein; 96.5 0.0069 1.5E-07 64.7 7.6 59 169-228 188-246 (492)
14 PRK12845 3-ketosteroid-delta-1 96.3 0.009 2E-07 64.6 7.2 56 169-226 228-283 (564)
15 PF00890 FAD_binding_2: FAD bi 96.3 0.015 3.2E-07 60.6 8.7 57 169-228 152-209 (417)
16 PF06039 Mqo: Malate:quinone o 96.3 0.016 3.5E-07 59.4 8.3 61 169-232 193-254 (488)
17 PRK08274 tricarballylate dehyd 96.1 0.013 2.8E-07 62.2 6.9 63 169-233 142-204 (466)
18 PRK06134 putative FAD-binding 96.0 0.015 3.2E-07 63.4 7.1 58 169-228 228-285 (581)
19 PRK12839 hypothetical protein; 95.9 0.019 4.1E-07 62.3 7.3 65 450-519 500-569 (572)
20 PRK12843 putative FAD-binding 95.7 0.024 5.2E-07 61.7 7.2 58 169-228 232-289 (578)
21 PRK06263 sdhA succinate dehydr 95.7 0.05 1.1E-06 58.8 9.6 53 169-222 145-198 (543)
22 PRK05675 sdhA succinate dehydr 95.6 0.028 6E-07 61.1 7.1 53 169-222 137-190 (570)
23 PRK06175 L-aspartate oxidase; 95.5 0.029 6.2E-07 58.8 6.9 51 169-222 140-190 (433)
24 TIGR01811 sdhA_Bsu succinate d 95.5 0.034 7.5E-07 60.7 7.6 52 170-222 145-197 (603)
25 PRK06452 sdhA succinate dehydr 95.5 0.074 1.6E-06 57.7 10.1 51 169-221 147-198 (566)
26 TIGR02734 crtI_fam phytoene de 95.4 1.9 4E-05 46.2 20.4 54 169-228 230-283 (502)
27 TIGR01813 flavo_cyto_c flavocy 95.4 0.031 6.8E-07 58.7 6.6 58 169-227 141-198 (439)
28 TIGR01816 sdhA_forward succina 95.4 0.033 7.3E-07 60.4 6.8 52 169-222 130-182 (565)
29 PRK08958 sdhA succinate dehydr 95.2 0.044 9.6E-07 59.7 7.2 53 169-222 154-207 (588)
30 PRK12842 putative succinate de 95.1 0.053 1.2E-06 59.0 7.5 58 169-228 225-282 (574)
31 PRK09078 sdhA succinate dehydr 95.1 0.044 9.6E-07 59.9 6.8 53 169-222 160-213 (598)
32 PRK07573 sdhA succinate dehydr 95.0 0.042 9.2E-07 60.4 6.3 52 169-222 181-233 (640)
33 PTZ00139 Succinate dehydrogena 94.9 0.055 1.2E-06 59.3 6.8 53 169-222 177-230 (617)
34 KOG2404|consensus 94.6 0.034 7.3E-07 54.0 3.8 49 172-222 159-207 (477)
35 COG0029 NadB Aspartate oxidase 94.6 0.11 2.3E-06 53.7 7.6 54 166-221 143-196 (518)
36 PLN02815 L-aspartate oxidase 94.6 0.061 1.3E-06 58.5 6.2 53 169-222 167-223 (594)
37 PRK05945 sdhA succinate dehydr 94.6 0.16 3.4E-06 55.4 9.4 52 169-222 146-198 (575)
38 PLN00128 Succinate dehydrogena 94.6 0.064 1.4E-06 58.9 6.4 53 169-222 198-251 (635)
39 PRK08275 putative oxidoreducta 94.5 0.073 1.6E-06 57.7 6.6 59 162-222 142-201 (554)
40 TIGR03377 glycerol3P_GlpA glyc 94.5 0.11 2.4E-06 55.8 7.9 60 169-231 139-199 (516)
41 PRK07803 sdhA succinate dehydr 94.4 0.1 2.2E-06 57.4 7.5 50 172-223 165-215 (626)
42 PRK08626 fumarate reductase fl 94.3 0.079 1.7E-06 58.5 6.2 52 169-222 169-221 (657)
43 PRK07395 L-aspartate oxidase; 94.2 0.062 1.4E-06 58.1 5.3 52 169-222 146-198 (553)
44 PRK06481 fumarate reductase fl 94.2 0.1 2.2E-06 55.9 6.7 57 169-227 201-257 (506)
45 PRK13977 myosin-cross-reactive 94.0 0.13 2.8E-06 55.0 7.0 54 169-222 237-294 (576)
46 PF01266 DAO: FAD dependent ox 94.0 0.082 1.8E-06 53.3 5.4 54 169-230 158-211 (358)
47 PRK09077 L-aspartate oxidase; 94.0 0.11 2.4E-06 56.0 6.6 53 169-222 150-208 (536)
48 PRK09231 fumarate reductase fl 93.8 0.15 3.3E-06 55.5 7.4 52 169-222 145-197 (582)
49 PRK08641 sdhA succinate dehydr 93.8 0.15 3.3E-06 55.6 7.3 51 171-222 150-201 (589)
50 PRK11101 glpA sn-glycerol-3-ph 93.7 0.22 4.8E-06 53.8 8.3 59 169-230 160-219 (546)
51 PRK12834 putative FAD-binding 93.7 0.17 3.6E-06 54.9 7.4 56 170-227 164-234 (549)
52 PLN02464 glycerol-3-phosphate 93.7 0.2 4.3E-06 55.1 8.0 60 169-230 243-304 (627)
53 TIGR01812 sdhA_frdA_Gneg succi 93.6 0.13 2.8E-06 56.0 6.4 52 169-222 140-192 (566)
54 PRK07057 sdhA succinate dehydr 93.6 0.18 3.8E-06 55.1 7.4 53 169-222 159-212 (591)
55 TIGR01176 fum_red_Fp fumarate 93.6 0.16 3.6E-06 55.2 7.1 52 169-222 144-196 (580)
56 PTZ00306 NADH-dependent fumara 93.6 0.16 3.4E-06 60.0 7.3 54 170-224 559-623 (1167)
57 PRK07512 L-aspartate oxidase; 93.4 0.11 2.4E-06 55.7 5.3 51 169-222 148-198 (513)
58 PRK08205 sdhA succinate dehydr 93.3 0.18 3.9E-06 55.0 6.8 53 169-222 151-207 (583)
59 COG0579 Predicted dehydrogenas 93.3 0.23 4.9E-06 51.3 7.1 65 161-233 158-222 (429)
60 COG0578 GlpA Glycerol-3-phosph 93.1 0.16 3.4E-06 53.7 5.8 74 152-233 162-236 (532)
61 PRK06069 sdhA succinate dehydr 93.1 0.21 4.6E-06 54.4 6.9 52 169-222 149-201 (577)
62 PRK08071 L-aspartate oxidase; 93.0 0.17 3.8E-06 54.1 6.0 50 171-222 142-191 (510)
63 PRK06854 adenylylsulfate reduc 93.0 0.24 5.3E-06 54.2 7.2 51 169-221 144-195 (608)
64 TIGR00551 nadB L-aspartate oxi 92.7 0.24 5.3E-06 52.7 6.7 50 170-222 141-190 (488)
65 TIGR02061 aprA adenosine phosp 92.2 0.34 7.4E-06 52.9 7.1 51 170-221 138-191 (614)
66 PRK13339 malate:quinone oxidor 92.1 0.6 1.3E-05 49.6 8.6 68 161-232 189-257 (497)
67 TIGR01320 mal_quin_oxido malat 91.9 0.51 1.1E-05 50.1 7.8 61 169-232 189-250 (483)
68 PF13738 Pyr_redox_3: Pyridine 91.7 0.097 2.1E-06 48.3 1.9 62 160-229 85-146 (203)
69 PRK05257 malate:quinone oxidor 91.5 0.59 1.3E-05 49.8 7.8 61 169-232 195-256 (494)
70 TIGR02485 CobZ_N-term precorri 91.5 0.39 8.5E-06 50.3 6.4 56 169-228 134-190 (432)
71 PRK13800 putative oxidoreducta 91.5 0.42 9E-06 55.0 7.1 51 170-222 155-206 (897)
72 PTZ00383 malate:quinone oxidor 91.1 0.61 1.3E-05 49.6 7.4 53 172-232 231-283 (497)
73 TIGR03378 glycerol3P_GlpB glyc 91.0 0.39 8.4E-06 49.6 5.5 56 169-228 274-329 (419)
74 PRK07804 L-aspartate oxidase; 90.8 0.44 9.5E-06 51.5 6.1 53 169-222 155-211 (541)
75 KOG0042|consensus 90.3 0.097 2.1E-06 54.4 0.4 68 151-223 221-289 (680)
76 PRK05329 anaerobic glycerol-3- 88.1 0.84 1.8E-05 47.5 5.5 59 163-226 265-323 (422)
77 PF01134 GIDA: Glucose inhibit 87.8 1 2.2E-05 46.0 5.8 48 169-223 107-154 (392)
78 PF13434 K_oxygenase: L-lysine 87.1 1.1 2.5E-05 45.2 5.7 63 159-225 97-161 (341)
79 PF12831 FAD_oxidored: FAD dep 87.0 0.19 4.1E-06 52.6 0.0 63 162-231 95-157 (428)
80 TIGR02730 carot_isom carotene 85.8 1.1 2.3E-05 47.9 5.0 53 169-227 240-292 (493)
81 PLN02661 Putative thiazole syn 85.1 1.9 4E-05 43.5 5.9 53 165-220 181-243 (357)
82 PRK04176 ribulose-1,5-biphosph 85.0 1.8 3.8E-05 41.9 5.6 50 169-219 115-171 (257)
83 TIGR02733 desat_CrtD C-3',4' d 84.8 1.8 3.9E-05 46.2 6.1 56 169-226 243-299 (492)
84 PRK12266 glpD glycerol-3-phosp 83.9 2.7 5.9E-05 45.0 7.0 55 169-227 166-221 (508)
85 TIGR02352 thiamin_ThiO glycine 82.5 1.9 4.1E-05 43.1 4.9 49 169-225 148-196 (337)
86 COG1053 SdhA Succinate dehydro 82.4 2.4 5.3E-05 45.8 5.9 52 169-221 150-202 (562)
87 TIGR01373 soxB sarcosine oxida 81.8 3.8 8.3E-05 42.4 7.0 53 169-228 194-246 (407)
88 TIGR02731 phytoene_desat phyto 81.5 3.8 8.2E-05 43.1 6.9 49 170-219 225-274 (453)
89 COG2081 Predicted flavoprotein 80.8 3.7 7.9E-05 41.7 6.0 89 117-224 82-170 (408)
90 PRK06185 hypothetical protein; 80.6 4.7 0.0001 41.6 7.2 58 169-231 120-177 (407)
91 PRK00711 D-amino acid dehydrog 80.3 3.9 8.4E-05 42.4 6.5 51 169-227 212-262 (416)
92 TIGR03862 flavo_PP4765 unchara 80.0 3.7 7.9E-05 42.0 5.9 88 118-225 58-145 (376)
93 PRK13369 glycerol-3-phosphate 79.3 4.9 0.00011 43.0 7.0 55 169-227 166-220 (502)
94 PRK12409 D-amino acid dehydrog 78.8 5 0.00011 41.6 6.7 55 169-228 208-264 (410)
95 PRK07208 hypothetical protein; 78.6 5.3 0.00011 42.4 6.9 56 170-226 230-285 (479)
96 KOG4254|consensus 77.5 1.7 3.7E-05 44.6 2.5 58 163-227 270-327 (561)
97 PRK15317 alkyl hydroperoxide r 77.2 7.6 0.00016 41.7 7.7 59 169-229 398-457 (517)
98 PRK08401 L-aspartate oxidase; 76.4 11 0.00025 39.8 8.7 46 169-222 131-176 (466)
99 TIGR02732 zeta_caro_desat caro 74.2 5.6 0.00012 42.2 5.6 56 169-226 230-289 (474)
100 PLN02985 squalene monooxygenas 73.9 9.7 0.00021 40.9 7.3 54 169-225 159-212 (514)
101 PF03486 HI0933_like: HI0933-l 73.7 2 4.2E-05 44.6 1.9 90 117-224 80-169 (409)
102 PRK05192 tRNA uridine 5-carbox 73.4 6.3 0.00014 42.9 5.7 47 169-222 112-158 (618)
103 TIGR01292 TRX_reduct thioredox 72.5 13 0.00029 36.1 7.6 58 169-229 188-246 (300)
104 PRK11728 hydroxyglutarate oxid 71.3 8.9 0.00019 39.5 6.2 54 169-231 160-213 (393)
105 COG3634 AhpF Alkyl hydroperoxi 71.1 10 0.00022 37.7 6.0 59 169-229 401-460 (520)
106 PRK10157 putative oxidoreducta 70.8 10 0.00022 39.6 6.6 61 161-231 112-172 (428)
107 PRK06126 hypothetical protein; 70.7 11 0.00025 40.7 7.1 50 169-221 138-188 (545)
108 COG3486 IucD Lysine/ornithine 69.8 11 0.00024 38.5 6.0 56 169-226 289-346 (436)
109 TIGR00136 gidA glucose-inhibit 68.3 6.7 0.00015 42.6 4.6 53 169-227 108-160 (617)
110 TIGR01377 soxA_mon sarcosine o 67.7 11 0.00024 38.4 6.0 51 169-228 156-206 (380)
111 TIGR03140 AhpF alkyl hydropero 67.4 16 0.00035 39.1 7.4 56 170-227 400-456 (515)
112 PLN02487 zeta-carotene desatur 67.0 12 0.00027 40.6 6.3 56 169-226 306-365 (569)
113 COG1233 Phytoene dehydrogenase 65.8 7.2 0.00016 41.5 4.2 52 169-227 235-286 (487)
114 TIGR00292 thiazole biosynthesi 65.7 11 0.00023 36.4 5.0 59 169-228 111-178 (254)
115 COG3573 Predicted oxidoreducta 65.1 13 0.00029 36.8 5.4 59 169-229 164-236 (552)
116 TIGR03197 MnmC_Cterm tRNA U-34 64.9 15 0.00032 37.6 6.3 49 169-226 146-194 (381)
117 PRK10262 thioredoxin reductase 62.7 32 0.00069 34.2 8.0 60 169-231 196-257 (321)
118 PRK11259 solA N-methyltryptoph 62.7 17 0.00036 37.0 6.2 49 169-226 160-208 (376)
119 PRK12831 putative oxidoreducta 61.3 22 0.00047 37.6 6.8 56 170-226 330-401 (464)
120 PF13434 K_oxygenase: L-lysine 60.5 17 0.00036 36.8 5.5 48 169-218 290-338 (341)
121 PRK07364 2-octaprenyl-6-methox 59.4 21 0.00047 36.8 6.4 50 169-222 133-182 (415)
122 PLN02172 flavin-containing mon 59.3 12 0.00027 39.4 4.5 69 159-231 113-183 (461)
123 PLN02612 phytoene desaturase 57.8 15 0.00033 39.9 5.1 45 170-219 320-364 (567)
124 PRK10015 oxidoreductase; Provi 57.4 17 0.00037 38.0 5.2 51 161-219 112-162 (429)
125 TIGR01316 gltA glutamate synth 56.7 28 0.00062 36.6 6.8 57 169-226 320-392 (449)
126 PF06100 Strep_67kDa_ant: Stre 56.7 29 0.00062 36.6 6.5 52 169-221 218-274 (500)
127 PRK12839 hypothetical protein; 55.7 19 0.00042 39.2 5.4 57 169-226 225-281 (572)
128 PRK06183 mhpA 3-(3-hydroxyphen 55.6 35 0.00075 36.9 7.4 56 169-227 125-180 (538)
129 PRK12845 3-ketosteroid-delta-1 55.4 19 0.00041 39.1 5.3 63 450-517 497-564 (564)
130 KOG2852|consensus 53.9 11 0.00023 36.7 2.6 64 163-231 154-217 (380)
131 PRK12810 gltD glutamate syntha 53.8 27 0.00059 37.0 6.1 59 170-230 341-410 (471)
132 PRK07233 hypothetical protein; 51.6 28 0.00061 36.0 5.8 51 169-226 209-259 (434)
133 COG3075 GlpB Anaerobic glycero 51.1 11 0.00024 37.3 2.3 51 169-223 269-319 (421)
134 PRK07818 dihydrolipoamide dehy 50.5 28 0.0006 36.8 5.5 54 169-225 224-277 (466)
135 PRK06327 dihydrolipoamide dehy 50.3 23 0.0005 37.5 4.9 55 169-226 235-289 (475)
136 COG0644 FixC Dehydrogenases (f 48.7 25 0.00054 36.3 4.7 51 162-219 100-150 (396)
137 PF01494 FAD_binding_3: FAD bi 48.6 31 0.00067 34.3 5.4 60 159-223 113-173 (356)
138 KOG2495|consensus 47.6 16 0.00035 37.5 2.9 60 453-518 329-392 (491)
139 TIGR01318 gltD_gamma_fam gluta 47.3 35 0.00077 36.1 5.7 60 170-230 332-408 (467)
140 TIGR01350 lipoamide_DH dihydro 47.2 31 0.00067 36.3 5.3 51 169-224 222-272 (461)
141 KOG1298|consensus 47.1 24 0.00051 35.9 3.9 51 169-222 159-209 (509)
142 PRK12842 putative succinate de 45.9 38 0.00082 37.0 5.8 64 450-518 499-567 (574)
143 TIGR01372 soxA sarcosine oxida 44.8 67 0.0014 37.6 7.8 61 169-232 362-422 (985)
144 PRK06416 dihydrolipoamide dehy 44.8 41 0.00088 35.5 5.7 54 169-226 224-277 (462)
145 PRK08244 hypothetical protein; 44.5 50 0.0011 35.1 6.4 57 161-222 104-160 (493)
146 PRK04965 NADH:flavorubredoxin 44.4 46 0.001 33.9 5.9 57 169-232 194-250 (377)
147 PRK12769 putative oxidoreducta 44.1 41 0.0009 37.3 5.8 53 169-222 517-585 (654)
148 TIGR03169 Nterm_to_SelD pyridi 43.5 32 0.0007 34.8 4.5 49 469-517 260-309 (364)
149 KOG2311|consensus 43.2 18 0.0004 37.6 2.5 54 169-227 136-192 (679)
150 COG0445 GidA Flavin-dependent 43.2 15 0.00032 39.1 1.9 53 169-227 112-164 (621)
151 TIGR02733 desat_CrtD C-3',4' d 42.9 74 0.0016 33.8 7.4 35 479-517 457-491 (492)
152 KOG2853|consensus 42.7 54 0.0012 32.8 5.5 41 191-233 291-331 (509)
153 COG0654 UbiH 2-polyprenyl-6-me 42.5 47 0.001 34.1 5.6 56 161-223 108-163 (387)
154 PRK12809 putative oxidoreducta 42.5 46 0.001 36.8 5.9 51 170-221 501-567 (639)
155 PF00070 Pyr_redox: Pyridine n 41.7 28 0.00061 26.4 2.9 35 162-199 45-79 (80)
156 PRK06134 putative FAD-binding 41.6 47 0.001 36.3 5.7 63 451-518 504-571 (581)
157 TIGR02028 ChlP geranylgeranyl 41.5 51 0.0011 34.0 5.7 57 160-219 96-158 (398)
158 PRK14989 nitrite reductase sub 41.0 45 0.00098 38.2 5.5 63 163-231 193-255 (847)
159 PRK11445 putative oxidoreducta 40.9 88 0.0019 31.5 7.2 51 170-224 110-160 (351)
160 TIGR03364 HpnW_proposed FAD de 40.9 35 0.00077 34.5 4.4 44 170-226 158-201 (365)
161 PRK06370 mercuric reductase; V 40.4 50 0.0011 34.8 5.6 52 169-224 223-274 (463)
162 PRK07045 putative monooxygenas 40.1 64 0.0014 32.9 6.2 51 169-224 118-168 (388)
163 TIGR02032 GG-red-SF geranylger 39.9 59 0.0013 31.3 5.7 46 169-220 102-147 (295)
164 PRK12837 3-ketosteroid-delta-1 39.7 43 0.00093 35.9 4.9 63 450-517 444-511 (513)
165 PRK12843 putative FAD-binding 39.6 49 0.0011 36.1 5.4 63 451-518 505-572 (578)
166 COG1252 Ndh NADH dehydrogenase 38.9 25 0.00055 36.2 2.9 47 469-518 280-331 (405)
167 PRK12770 putative glutamate sy 38.6 70 0.0015 32.3 6.1 60 169-231 221-297 (352)
168 TIGR03329 Phn_aa_oxid putative 38.4 43 0.00093 35.3 4.7 48 169-226 194-241 (460)
169 PRK04176 ribulose-1,5-biphosph 38.3 64 0.0014 31.1 5.4 51 467-519 202-255 (257)
170 PRK12835 3-ketosteroid-delta-1 38.1 58 0.0012 35.6 5.7 64 451-519 503-571 (584)
171 PRK08243 4-hydroxybenzoate 3-m 38.1 75 0.0016 32.5 6.3 50 169-222 114-163 (392)
172 TIGR01984 UbiH 2-polyprenyl-6- 37.9 71 0.0015 32.4 6.1 43 170-219 118-160 (382)
173 COG1252 Ndh NADH dehydrogenase 37.6 38 0.00083 34.9 3.9 53 162-225 214-266 (405)
174 PRK08773 2-octaprenyl-3-methyl 37.5 57 0.0012 33.4 5.3 54 169-231 124-177 (392)
175 PF07992 Pyr_redox_2: Pyridine 37.4 59 0.0013 29.3 4.9 48 170-220 70-121 (201)
176 PRK11749 dihydropyrimidine deh 37.4 74 0.0016 33.5 6.2 56 169-226 322-392 (457)
177 PRK09564 coenzyme A disulfide 37.2 61 0.0013 33.8 5.6 56 169-232 202-257 (444)
178 PTZ00363 rab-GDP dissociation 36.7 73 0.0016 33.5 5.9 47 169-220 243-289 (443)
179 TIGR02053 MerA mercuric reduct 36.7 50 0.0011 34.8 4.8 52 169-224 218-269 (463)
180 PRK12844 3-ketosteroid-delta-1 36.0 59 0.0013 35.3 5.3 63 451-518 483-550 (557)
181 TIGR01988 Ubi-OHases Ubiquinon 35.8 72 0.0016 32.3 5.7 55 158-220 108-162 (385)
182 KOG2820|consensus 35.8 63 0.0014 32.3 4.8 60 163-229 159-219 (399)
183 COG2072 TrkA Predicted flavopr 35.7 56 0.0012 34.3 4.9 55 170-227 96-150 (443)
184 PRK07121 hypothetical protein; 35.6 50 0.0011 35.1 4.7 63 452-518 425-491 (492)
185 PRK13512 coenzyme A disulfide 35.0 73 0.0016 33.3 5.7 47 169-220 69-116 (438)
186 PRK12771 putative glutamate sy 34.9 93 0.002 33.8 6.7 56 170-227 317-386 (564)
187 PRK05976 dihydrolipoamide dehy 34.2 52 0.0011 34.8 4.5 53 169-224 232-284 (472)
188 COG0492 TrxB Thioredoxin reduc 34.2 1.2E+02 0.0026 30.1 6.7 59 169-231 190-248 (305)
189 PRK09754 phenylpropionate diox 33.8 78 0.0017 32.6 5.6 55 169-231 197-251 (396)
190 TIGR00275 flavoprotein, HI0933 33.6 54 0.0012 33.9 4.4 54 162-224 110-163 (400)
191 PTZ00318 NADH dehydrogenase-li 33.5 61 0.0013 33.7 4.8 48 470-518 298-347 (424)
192 TIGR02374 nitri_red_nirB nitri 33.3 60 0.0013 36.9 5.0 56 169-231 193-248 (785)
193 PRK06115 dihydrolipoamide dehy 33.3 57 0.0012 34.4 4.6 54 169-225 226-280 (466)
194 PRK05732 2-octaprenyl-6-methox 31.9 85 0.0018 32.0 5.6 45 169-220 124-168 (395)
195 PF01593 Amino_oxidase: Flavin 31.6 70 0.0015 32.5 4.9 42 172-220 223-264 (450)
196 TIGR03467 HpnE squalene-associ 30.9 69 0.0015 32.8 4.7 50 170-225 209-258 (419)
197 PF13807 GNVR: G-rich domain o 30.8 56 0.0012 25.2 3.0 33 479-511 37-69 (82)
198 PRK12775 putative trifunctiona 30.4 1.3E+02 0.0028 35.3 7.1 58 169-227 620-692 (1006)
199 PRK08163 salicylate hydroxylas 30.3 1E+02 0.0022 31.5 5.8 48 169-223 121-168 (396)
200 PRK06467 dihydrolipoamide dehy 30.2 84 0.0018 33.3 5.3 53 170-226 227-279 (471)
201 PRK01747 mnmC bifunctional tRN 29.1 91 0.002 34.7 5.5 49 169-226 419-467 (662)
202 TIGR00292 thiazole biosynthesi 28.7 65 0.0014 31.0 3.7 50 468-519 202-254 (254)
203 TIGR02730 carot_isom carotene 28.5 69 0.0015 34.1 4.3 37 478-518 456-492 (493)
204 COG1635 THI4 Ribulose 1,5-bisp 28.5 48 0.001 31.1 2.6 50 469-520 209-261 (262)
205 PRK06834 hypothetical protein; 28.4 1.1E+02 0.0025 32.5 5.9 46 169-221 111-156 (488)
206 PRK08132 FAD-dependent oxidore 28.4 1.3E+02 0.0029 32.4 6.5 50 169-222 137-186 (547)
207 COG2509 Uncharacterized FAD-de 28.3 1.1E+02 0.0025 31.8 5.4 45 169-219 184-228 (486)
208 COG0665 DadA Glycine/D-amino a 28.2 1.5E+02 0.0032 30.0 6.6 51 170-229 169-219 (387)
209 COG3380 Predicted NAD/FAD-depe 27.6 1.5E+02 0.0032 28.9 5.7 64 154-229 105-168 (331)
210 PRK13984 putative oxidoreducta 27.5 1.3E+02 0.0029 32.9 6.4 56 170-227 474-544 (604)
211 TIGR02023 BchP-ChlP geranylger 27.0 1.2E+02 0.0026 31.0 5.6 56 159-219 94-153 (388)
212 PRK06912 acoL dihydrolipoamide 26.9 1.2E+02 0.0027 31.8 5.8 49 169-223 222-270 (458)
213 PRK12778 putative bifunctional 26.8 1.3E+02 0.0028 34.0 6.3 55 169-224 619-689 (752)
214 TIGR02485 CobZ_N-term precorri 26.4 98 0.0021 32.2 4.9 62 451-517 363-429 (432)
215 PLN02576 protoporphyrinogen ox 26.3 1.6E+02 0.0034 31.3 6.5 52 173-227 252-303 (496)
216 PRK07333 2-octaprenyl-6-methox 26.3 1.1E+02 0.0025 31.1 5.4 54 161-223 115-168 (403)
217 PRK06292 dihydrolipoamide dehy 26.3 1.2E+02 0.0027 31.8 5.7 52 169-225 221-272 (460)
218 TIGR01438 TGR thioredoxin and 26.3 77 0.0017 33.7 4.1 54 169-226 231-284 (484)
219 PRK08274 tricarballylate dehyd 25.9 86 0.0019 33.0 4.4 62 451-517 394-460 (466)
220 PRK08020 ubiF 2-octaprenyl-3-m 25.6 1.6E+02 0.0034 30.0 6.3 47 169-223 124-170 (391)
221 PRK09126 hypothetical protein; 25.3 1.5E+02 0.0032 30.2 5.9 44 169-219 122-165 (392)
222 PRK07608 ubiquinone biosynthes 25.1 1.2E+02 0.0026 30.8 5.2 44 169-220 123-166 (388)
223 PRK06847 hypothetical protein; 25.0 1.4E+02 0.003 30.2 5.6 58 161-226 111-168 (375)
224 PRK07843 3-ketosteroid-delta-1 24.7 1E+02 0.0022 33.5 4.7 63 450-517 489-556 (557)
225 TIGR03385 CoA_CoA_reduc CoA-di 23.7 1.4E+02 0.0031 30.9 5.5 54 169-231 190-243 (427)
226 PRK06116 glutathione reductase 23.6 1.1E+02 0.0023 32.1 4.6 50 169-224 219-268 (450)
227 PRK07190 hypothetical protein; 23.4 1.6E+02 0.0034 31.4 5.8 46 169-221 120-165 (487)
228 PRK06184 hypothetical protein; 23.4 2E+02 0.0042 30.7 6.6 49 169-221 120-168 (502)
229 PRK08275 putative oxidoreducta 23.4 1.2E+02 0.0026 32.8 5.0 55 452-515 347-401 (554)
230 PRK12834 putative FAD-binding 23.3 1.2E+02 0.0026 32.8 5.0 61 451-516 480-548 (549)
231 PRK07057 sdhA succinate dehydr 23.2 1.2E+02 0.0027 33.1 5.1 61 452-517 357-425 (591)
232 PRK06481 fumarate reductase fl 22.8 1.2E+02 0.0026 32.5 4.8 63 451-518 437-503 (506)
233 PRK09564 coenzyme A disulfide 22.5 1.4E+02 0.0031 31.0 5.3 47 169-220 67-114 (444)
234 PRK07538 hypothetical protein; 22.4 1.6E+02 0.0035 30.3 5.6 49 171-223 117-166 (413)
235 PF01946 Thi4: Thi4 family; PD 22.3 3.2E+02 0.0069 25.7 6.7 53 163-218 103-162 (230)
236 PLN02661 Putative thiazole syn 22.1 91 0.002 31.6 3.4 51 468-520 276-329 (357)
237 KOG1335|consensus 22.0 2.1E+02 0.0046 29.3 5.8 65 169-244 263-328 (506)
238 PLN00128 Succinate dehydrogena 22.0 1.5E+02 0.0033 32.8 5.5 63 452-517 396-465 (635)
239 PRK06475 salicylate hydroxylas 21.1 1.6E+02 0.0034 30.3 5.1 50 169-223 119-168 (400)
240 PRK12779 putative bifunctional 20.8 2.7E+02 0.0059 32.5 7.3 54 170-224 496-565 (944)
241 PRK08958 sdhA succinate dehydr 20.7 1.4E+02 0.0031 32.6 4.9 62 452-516 353-421 (588)
242 COG1249 Lpd Pyruvate/2-oxoglut 20.7 1.8E+02 0.0038 30.8 5.3 46 169-219 225-270 (454)
243 TIGR03385 CoA_CoA_reduc CoA-di 20.5 1.6E+02 0.0034 30.5 5.1 51 169-226 55-106 (427)
244 PF04820 Trp_halogenase: Trypt 20.4 1.2E+02 0.0025 32.1 4.0 54 159-219 156-209 (454)
No 1
>KOG1238|consensus
Probab=100.00 E-value=1e-95 Score=746.79 Aligned_cols=507 Identities=36% Similarity=0.550 Sum_probs=449.1
Q ss_pred cCCCCCcccceeecccccCcccCCCCceeeeecCcccchhhHhhcceeecCChhhHHHHHHhCCCCCCchhhHHHHHHhc
Q psy14407 3 SVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSE 82 (522)
Q Consensus 3 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~vGGsS~~n~~~~~r~~~~df~~w~~~g~~~w~~~~l~pyy~~~e 82 (522)
..++.+.+||.|+|+||+++|..+.++++.|+|||+|||||++|+|+|.|+.+.|||.|.+.|+++|+|++++|||+|+|
T Consensus 104 ~~~q~s~~dw~y~t~Ps~~ac~~m~~~~c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E 183 (623)
T KOG1238|consen 104 ANLQLSLYDWSYHTEPSQHACLAMSEDRCYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSE 183 (623)
T ss_pred HHhccccccccCcCccChhhhhhhcCCceecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 35778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCcCCCCcEeeecCCCCCCchHHHHHHHHHHHcCCCCCCCCCCCCcccceeeecccccCCeecchhhhh
Q psy14407 83 DYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAY 162 (522)
Q Consensus 83 ~~~~~~~~~~~~~~g~~gp~~v~~~~~~~~~~~~~~~~~a~~~~G~~~~~~~n~~~~~~G~~~~~~~~~~g~R~s~~~~~ 162 (522)
+...+.... .++|+..||+.+...++. +++...|.++.+++|.+ ..|+|+.. ..|+...+.++++|.|+|+..+|
T Consensus 184 ~~~~~~~~~-~~y~~~~g~~~ve~~~~~--~~~~~~~~~ag~e~G~~-~~D~nG~~-~tg~~~l~~t~~~g~R~s~~~a~ 258 (623)
T KOG1238|consen 184 DKVVPDPEL-TPYHGAGGPLLVEAGVYP--NNLFTAFHRAGTEIGGS-IFDRNGER-HTGASLLQYTIRNGIRVSLAKAY 258 (623)
T ss_pred hccCCCccc-CcccccCCcceecccccc--CchhhHhHHhHHhcCCC-ccCCCCcc-ccchhhhhccccCCEEEEehhhh
Confidence 997766554 458999999999988888 89999999999999954 44999988 89999888999999999999999
Q ss_pred cccccCCCCCeEEEcCcEEEEEEec-CCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHHhCCCChhhhhhCC
Q psy14407 163 LTPIAGKRTNLYVLKRSKVTKVIIN-DQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVK 241 (522)
Q Consensus 163 l~~~~~~~~n~~v~~~~~V~~I~~~-~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~SGig~~~~l~~~g 241 (522)
|.++...|+||.+..++.|+||.+| .+.++.||++....|++++++|+||||||||||+||+|||+|||||+++|+++|
T Consensus 259 l~~~~~~R~NL~~~~~~~vtrvl~D~~~~~a~gv~~~~~~~~~~~v~a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~g 338 (623)
T KOG1238|consen 259 LKPIRLTRPNLHISRNAAVTRVLIDPAGKRAKGVEFVRDGGKEHTVKARKEVILSAGAINSPQLLMLSGIGPADHLKKLG 338 (623)
T ss_pred hhhhhccCccccccccceEEEEEEcCCCceEEEEEEEecCceeeeecccceEEEeccccCCHHHHHHcCCCcHHHHHhcC
Confidence 9998733899999999999999999 788999999998338999999999999999999999999999999999999999
Q ss_pred CCceeecc-ccccccccccccccEEEecCCC--ccccchHHHHHHHHhcCCCCccccccccEEEEEeCCCCC---CCCch
Q psy14407 242 IPVKQDLR-VGENLKLNAQFTGPVMAFSAPL--KRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNT---ARPDL 315 (522)
Q Consensus 242 i~~~~~~p-VG~~l~dh~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~---~~p~~ 315 (522)
||++.|+| ||+||+||+...+..+..+... .........+.+|+..+.|++...+ ....+|++..... ++||+
T Consensus 339 Ipvv~dLP~VG~nLqDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~G~~~~~~-~e~~~f~~t~~~~~~~~~PD~ 417 (623)
T KOG1238|consen 339 IPVVLDLPGVGQNLQDHPMNPGFVFSTNPVELSLIRLVGITTVGQYLEGGSGPLASPG-VETLGFINTVSSNLSLDWPDI 417 (623)
T ss_pred CCeeccCcccccccccccccceeeecCCCccccccccccchHHHHHHHcCCCCcccCc-ceeeEEeccccccCcCCCCCe
Confidence 99999999 9999999999863344444221 2223345678899999999998876 5788898876643 89999
Q ss_pred hhhhhhcccccchhhhhHhhhcccchHHHHHHhhcCCCCCeEEEEEeecccCcceEEEecCCCCCCCceeecCCCCChHH
Q psy14407 316 EIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPED 395 (522)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D 395 (522)
++++..... ..+....+....+ ++.+.++........+.++..+++|.|||+|+|.++||++.|.|++||+.+|+|
T Consensus 418 ~~~~~~~~~-~~~~~~~~~~~~~---~~y~~~~~~~~~~~~~~i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~D 493 (623)
T KOG1238|consen 418 ELHFVAGSL-SSDGLTALRKALG---EIYQALFGELTNSDSFVIFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPED 493 (623)
T ss_pred eEEeccccc-cccchhhhhhhcc---hHHHHhhhhhhcCceeEEeehhcCCCccceEEecCCCCCcCceeccCcCCCHHH
Confidence 988776654 2333233333333 555555555544556778888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcChhHHhhcccccccCCccCCCCCCCCHHHHHHHHHhhCCCCCcccccccccCCCCCCcccCCCC
Q psy14407 396 LATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDL 475 (522)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~rMG~~~~~~~VVD~~~ 475 (522)
++.++++++.+.++.++.+|++++..+...++|+|......+|++|+||+|....+.+|++|||+||++.|+++|||+++
T Consensus 494 v~~~vegi~~~~~l~~s~af~~~~~r~~~~~~~~c~~~~~~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~l 573 (623)
T KOG1238|consen 494 VATLVEGIRTIIRLSNSKAFQRFGARLWKKPVPGCDLLAFLSDAYWECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQL 573 (623)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHhcchhccccCCCcccccCCCHHHHHHHHHhccceeeccCCceEeCCccCCCcccCCcc
Confidence 99999999999999999999999998888899999999999999999999999999999999999999888889999999
Q ss_pred ceeCcCCceEecccCCCCCCCchhHHHHHHHHHHHHHHHhhhcC
Q psy14407 476 KVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSYN 519 (522)
Q Consensus 476 rv~g~~NL~V~DaSv~P~~~~~NPtlTi~Ala~r~Ad~i~~~~~ 519 (522)
||||++||||+|||+||.+|++||.+|+||||||+||.|+++|.
T Consensus 574 rV~Gv~~LRVVDaSimP~~psgN~nA~v~MIgek~ad~Ik~~~~ 617 (623)
T KOG1238|consen 574 RVHGVRGLRVVDASIMPESPSGNPNAPVMMIGEKAADMIKEEWL 617 (623)
T ss_pred eeccccCceEeeccccCCCCCCCccHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999874
No 2
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=1.7e-81 Score=670.69 Aligned_cols=470 Identities=31% Similarity=0.449 Sum_probs=383.1
Q ss_pred CCcccceeecccccCcccCCCCceeeeecCcccchhhHhhcceeecCChhhHHHHHH-hCCCCCCchhhHHHHHHhccCC
Q psy14407 7 LSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAK-LGYNGWGYDETLKYFVKSEDYR 85 (522)
Q Consensus 7 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~vGGsS~~n~~~~~r~~~~df~~w~~-~g~~~w~~~~l~pyy~~~e~~~ 85 (522)
++.++|.|+++||+ ...++.+.+.+||+|||||.||+|+|+|+++.||+.|++ .|+++|+|++|+|||+|+|+++
T Consensus 54 ~~~~~~~~~~~p~~----~~~~~~~~~~~g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~ 129 (532)
T TIGR01810 54 NKRYNWIYETEPEP----HMNNRRVGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTF 129 (532)
T ss_pred CCCcceeeEcccCC----CCCCceEeeecccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccC
Confidence 44579999999998 467889999999999999999999999999999999998 6889999999999999999987
Q ss_pred CCCCCCCCCCcCCCCcEeeecCCCCCCchHHHHHHHHHHHcCCCCCCCCCCCCcccceeeecccccCCeecchhhhhccc
Q psy14407 86 SVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTP 165 (522)
Q Consensus 86 ~~~~~~~~~~~g~~gp~~v~~~~~~~~~~~~~~~~~a~~~~G~~~~~~~n~~~~~~G~~~~~~~~~~g~R~s~~~~~l~~ 165 (522)
+.. .++|+..||+.++.++.. .+..+.|.++++++|++...++|... ..|++.|.+.|.+|+|+|+..+||.+
T Consensus 130 ~~~----~~~~g~~G~~~v~~~~~~--~~~~~~~~~a~~~~G~~~~~~~~~~~-~~g~~~~~~~~~~g~r~s~~~~~l~~ 202 (532)
T TIGR01810 130 GGE----KPYRGHDGPIKVRRGPAD--NPLFQAFIEAGVEAGYNKTPDVNGFR-QEGFGPMDSTVHNGRRVSAARAYLHP 202 (532)
T ss_pred CCC----cccCCCCCCEEEecCCCC--CHHHHHHHHHHHHcCCCccCCCCCCC-ccceEEEEEEcCCCEEEcHHHHHhhh
Confidence 643 467999999999977666 78899999999999999888888777 77888888888899999999999988
Q ss_pred ccCCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHHhCCCChhhhhhCCCCce
Q psy14407 166 IAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVK 245 (522)
Q Consensus 166 ~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~SGig~~~~l~~~gi~~~ 245 (522)
+. .++|++|+++++|+||+++ +++|+||++.+ .+...++.+.|+||||||||+||+|||+|||||+++|+++||+++
T Consensus 203 a~-~r~nl~i~~~~~V~rI~~~-~~ra~GV~~~~-~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~ 279 (532)
T TIGR01810 203 AM-KRPNLEVQTRAFVTKINFE-GNRATGVEFKK-GGRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPR 279 (532)
T ss_pred hc-cCCCeEEEeCCEEEEEEec-CCeEEEEEEEe-CCcEEEEEEeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeE
Confidence 87 7999999999999999998 78999999987 455555555589999999999999999999999999999999999
Q ss_pred eecc-ccccccccccccccEEEecCCC-cccc----chHHHHHHHHhcCCCCccccccccEEEEEeCCCCCCCCchhhhh
Q psy14407 246 QDLR-VGENLKLNAQFTGPVMAFSAPL-KRTV----YSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHL 319 (522)
Q Consensus 246 ~~~p-VG~~l~dh~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~p~~~~~~ 319 (522)
.++| ||+||+||+.+. +.+.++... .... .......+|...+.+++.... ....+|.+.......|++++.+
T Consensus 280 ~~lp~VG~nL~DH~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~p~~~~~~ 357 (532)
T TIGR01810 280 IHLPGVGENLQDHLEVY-VQHACKQPVSLYPSLNWLKQPFIGAQWLFGRKGAGASNH-FEGGGFVRSNDDVDYPNIQYHF 357 (532)
T ss_pred eeCCccccchhhcccce-eEEEecCCcccccccchhhhhHHHHHHHhcCCCCccccc-cceeEEEecCCCCCCCCeEEEE
Confidence 9999 999999999985 888776541 1110 011123356666667765432 2344555443222345554433
Q ss_pred hhcccccchhhhhHhhhcccchHHHHHHhhcCCCCCeEEEEEeecccCcceEEEecCCCCCCCceeecCCCCChHHHHHH
Q psy14407 320 LYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATL 399 (522)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~ 399 (522)
.+.... ... ........+.+....++|.|||+|+|+++||++.|.|+++|+.++.|++.+
T Consensus 358 ~~~~~~-------------~~~-------~~~~~~~~~~~~~~~~~P~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~ 417 (532)
T TIGR01810 358 LPVAIR-------------YDG-------TKAPKAHGFQVHVGPMYSNSRGHVKIKSKDPFEKPEIVFNYMSHEEDWREF 417 (532)
T ss_pred Eeeeec-------------cCC-------CCCCCCCcEEEEEeecCCCCceEEEecCCCCccCceeccccCCCHHHHHHH
Confidence 221110 000 000011235555667899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcChhHHhhcccccccCCccCCCCCCCCHHHHHHHHHhhCCCCCcccccccccCCCCCCcccCCCCceeC
Q psy14407 400 IRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKG 479 (522)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~rMG~~~~~~~VVD~~~rv~g 479 (522)
.++++++++++++.+++.+...+. .| .....+++++++|++....+.+|++||||||++.++++|||++|||||
T Consensus 418 ~~~~~~~~~i~~~~~~~~~~~~~~---~p---~~~~~~d~~~~~~ir~~~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~G 491 (532)
T TIGR01810 418 REAIRVTREILKQKALDPYRGGEI---SP---GPEVQTDEEIDEFVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHG 491 (532)
T ss_pred HHHHHHHHHHHcCcchhhcccccc---CC---CCCCCCHHHHHHHHhhhcccccccccceeCCCcccCCCccCCCCeEec
Confidence 999999999999877776543322 12 223478999999999999999999999999983345699999999999
Q ss_pred cCCceEecccCCCCCCCchhHHHHHHHHHHHHHHHhhhc
Q psy14407 480 IKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSY 518 (522)
Q Consensus 480 ~~NL~V~DaSv~P~~~~~NPtlTi~Ala~r~Ad~i~~~~ 518 (522)
++||||||+||||+.+++||++|+||||+|+||+|+++.
T Consensus 492 v~nLrVvDaSv~P~~~~~n~~~t~~aiaeraAd~I~~~~ 530 (532)
T TIGR01810 492 MEGLRVVDASIMPRITNGNLNAPVIMMGEKAADIIRGKK 530 (532)
T ss_pred cCCcEEeeeccCCCCCCCccHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999864
No 3
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=1.8e-81 Score=673.90 Aligned_cols=470 Identities=30% Similarity=0.461 Sum_probs=382.3
Q ss_pred CCcccceeecccccCcccCCCCceeeeecCcccchhhHhhcceeecCChhhHHHHHHh-CCCCCCchhhHHHHHHhccCC
Q psy14407 7 LSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKSEDYR 85 (522)
Q Consensus 7 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~vGGsS~~n~~~~~r~~~~df~~w~~~-g~~~w~~~~l~pyy~~~e~~~ 85 (522)
.+.++|.|.++||+ ...++.+.+.+||+|||||+||+|+|+|+++.||+.|+++ |+.+|+|++|+|||+|+|+++
T Consensus 60 ~~~~~~~~~~~p~~----~~~~~~~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~ 135 (560)
T PRK02106 60 GKRYNWAYETEPEP----HMNNRRMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRD 135 (560)
T ss_pred CCceeeceecccCC----CCCCCeeecccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccC
Confidence 45689999999998 4578889999999999999999999999999999999987 888999999999999999987
Q ss_pred CCCCCCCCCCcCCCCcEeeecC-CCCCCchHHHHHHHHHHHcCCCCCCCCCCCCcccceeeecccccCCeecchhhhhcc
Q psy14407 86 SVIYNESKAVHGTQGYLPVGLF-KNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLT 164 (522)
Q Consensus 86 ~~~~~~~~~~~g~~gp~~v~~~-~~~~~~~~~~~~~~a~~~~G~~~~~~~n~~~~~~G~~~~~~~~~~g~R~s~~~~~l~ 164 (522)
... ..+|+..||++++.+ .+. ++....|.++++++|++...++|++. +.|++.|...|.+|+|+|+..+||+
T Consensus 136 ~~~----~~~~g~~gp~~~~~~~~~~--~~~~~~~~~a~~~lG~~~~~~~~~~~-~~g~~~~~~~~~~g~R~s~~~~~l~ 208 (560)
T PRK02106 136 GGE----DDYRGGDGPLSVTRGKPGT--NPLFQAFVEAGVQAGYPRTDDLNGYQ-QEGFGPMDRTVTNGRRWSAARAYLD 208 (560)
T ss_pred CCC----ccccCCCCCEEEeCCCCCC--CHHHHHHHHHHHHcCCCcCCCCCCCC-CceeEEEeeecCCCEEEChHHHhhc
Confidence 321 456888999999865 444 78899999999999999888888877 7898888888889999999999999
Q ss_pred cccCCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHHhCCCChhhhhhCCCCc
Q psy14407 165 PIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPV 244 (522)
Q Consensus 165 ~~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~SGig~~~~l~~~gi~~ 244 (522)
++. +++|++|+++++|+||+++ +++|+||++.+.+ ...++.+.|+||||||+|+||+|||+|||||+++|+++||++
T Consensus 209 ~a~-~~~nl~i~~~a~V~rI~~~-~~~a~GV~~~~~~-~~~~~~~ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~ 285 (560)
T PRK02106 209 PAL-KRPNLTIVTHALTDRILFE-GKRAVGVEYERGG-GRETARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPV 285 (560)
T ss_pred ccc-CCCCcEEEcCCEEEEEEEe-CCeEEEEEEEeCC-cEEEEEeeeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCce
Confidence 988 8999999999999999998 7899999999844 444444447999999999999999999999999999999999
Q ss_pred eeecc-ccccccccccccccEEEecCCCc--cc--c-chHHHHHHHHhcCCCCccccccccEEEEEeCCCCCCCCchhhh
Q psy14407 245 KQDLR-VGENLKLNAQFTGPVMAFSAPLK--RT--V-YSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIH 318 (522)
Q Consensus 245 ~~~~p-VG~~l~dh~~~~~~~~~~~~~~~--~~--~-~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~p~~~~~ 318 (522)
+.|+| ||+||+||+.+. +.+.++.+.. .. . .......+|...+.|++...+ ....+|.+.......|++++.
T Consensus 286 ~~dlP~VG~NL~dH~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~p~~~~~ 363 (560)
T PRK02106 286 VHDLPGVGENLQDHLEVY-IQYECKQPVSLYPALKWWNKPKIGAEWLFTGTGLGASNH-FEAGGFIRSRAGVDWPNIQYH 363 (560)
T ss_pred EeeCCCCCcChhhCccce-EEEEeCCCcccccccchhhhhHHHHHHHhcCCCCccccc-cceeeEEecCCCCCCCCeEEE
Confidence 99999 999999999985 8887766521 10 1 111223466666677765432 234456554322134554432
Q ss_pred hhhcccccchhhhhHhhhcccchHHHHHHhhcCCCCCeEEEEEeecccCcceEEEecCCCCCCCceeecCCCCChHHHHH
Q psy14407 319 LLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLAT 398 (522)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~ 398 (522)
+.+... . ..+ ........+++...+++|.++|+|+|+++||++.|.|+++|+.++.|++.
T Consensus 364 ~~~~~~---------~-~~~----------~~~~~~~~~~~~~~~~~P~srG~V~L~s~d~~~~P~i~~~y~~~~~D~~~ 423 (560)
T PRK02106 364 FLPVAI---------R-YDG----------SNAVKGHGFQAHVGPMRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWRE 423 (560)
T ss_pred Eeeccc---------c-ccC----------CCCCCCCeEEEEEEecCCcceEEEEEeCCCCccCceEccccCCCHHHHHH
Confidence 222110 0 000 00001224555566789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcChhHHhhcccccccCCccCCCCCCCCHHHHHHHHHhhCCCCCcccccccccCCCCCCcccCCCCcee
Q psy14407 399 LIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVK 478 (522)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~rMG~~~~~~~VVD~~~rv~ 478 (522)
+.++++++++++++.+++.+...+. .|+ ....+++++++|++....+++|++||||||+++ +||||++||||
T Consensus 424 ~~~~~~~~~~i~~~~~~~~~~~~~~---~p~---~~~~~~~~~~~~i~~~~~~~~H~~GTcrMG~d~--~sVVD~~~rV~ 495 (560)
T PRK02106 424 FRDAIRLTREIMAQPALDPYRGREI---SPG---ADVQTDEEIDAFVREHAETAYHPSCTCKMGTDP--MAVVDPEGRVH 495 (560)
T ss_pred HHHHHHHHHHHHcChhhhhcccccc---CCC---cccCCHHHHHHHHHhccCcCcccCCCeecCCCC--CeeECCCCEEe
Confidence 9999999999999887776544332 232 224678899999999988899999999999864 59999999999
Q ss_pred CcCCceEecccCCCCCCCchhHHHHHHHHHHHHHHHhhhcCC
Q psy14407 479 GIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSYNI 520 (522)
Q Consensus 479 g~~NL~V~DaSv~P~~~~~NPtlTi~Ala~r~Ad~i~~~~~~ 520 (522)
|++||||+|+||||+.+++||++|+||||+|+||+|++++++
T Consensus 496 Gv~nLrVvDaSv~P~~~~~np~~ti~aiaeraAd~I~~~~~~ 537 (560)
T PRK02106 496 GVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADLIRGRTPL 537 (560)
T ss_pred ccCCeEEeeccccCCCCCcchHHHHHHHHHHHHHHHhccCCC
Confidence 999999999999999999999999999999999999998754
No 4
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-72 Score=594.23 Aligned_cols=470 Identities=31% Similarity=0.444 Sum_probs=386.7
Q ss_pred CCcccceeecccccCcccCCCCceeeeecCcccchhhHhhcceeecCChhhHHHHHHh-CCCCCCchhhHHHHHHhccCC
Q psy14407 7 LSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKSEDYR 85 (522)
Q Consensus 7 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~vGGsS~~n~~~~~r~~~~df~~w~~~-g~~~w~~~~l~pyy~~~e~~~ 85 (522)
++.++|.|.+++++ ...++.+.+++|++|||||+||+|.|+|+.+.||+.|... |.++|+|+|++|||+++|++.
T Consensus 59 ~~~~~w~~~~~~~~----~~~~r~~~~~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~ 134 (542)
T COG2303 59 GPRYDWGFRTEPEP----HLRGRELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLL 134 (542)
T ss_pred CcccCCccccCccc----CCCCccccccccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhc
Confidence 33789999999999 5789999999999999999999999999999999999875 789999999999999999988
Q ss_pred CCCCCCCCCCcCCCCcEeeecCCCCCCchHHHHHHHHHHHcCCCCCCCCCCCCcccceeeecccccCCeecchhhhhccc
Q psy14407 86 SVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTP 165 (522)
Q Consensus 86 ~~~~~~~~~~~g~~gp~~v~~~~~~~~~~~~~~~~~a~~~~G~~~~~~~n~~~~~~G~~~~~~~~~~g~R~s~~~~~l~~ 165 (522)
+..++.....|+..||+++...... .+....|.++++++|++...++|+.. .+|++.|...+++|+|+|+..+||.+
T Consensus 135 ~~~g~~~~~~~g~~gp~~~~~~~~~--~~~~~a~~~a~~~~G~~~~~~~~~~~-~~g~g~~~~~~~~g~r~sa~~a~l~~ 211 (542)
T COG2303 135 GVGGQDLRTWHGGGGPLPVSPPRSP--NPIARAFIEAGEQLGFPTTPDPNGAD-QEGFGPYCVTICNGRRWSAARAYLKP 211 (542)
T ss_pred CCCCCCCCCCcCCCCCccccCCCCc--hHHHHHHHHHHHHcCCCcCcccccCC-CCCcccceeeccCCeEeechhhcchh
Confidence 8765411457999999999877555 78999999999999999998999988 78888777766699999999999999
Q ss_pred ccCCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCe-EEEEEeCcEEEEcCcchhhhHHHHHhCCCChhhhhhCCCCc
Q psy14407 166 IAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGE-TVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPV 244 (522)
Q Consensus 166 ~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~-~~~v~A~k~VILaaGai~Tp~LLl~SGig~~~~l~~~gi~~ 244 (522)
+. +++|++|++++.|++|+++ ++++++|++...++. .....+.++||||||+|+||+|||+||||+.+.+..+|+.+
T Consensus 212 a~-~~~nl~v~t~a~v~ri~~~-~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~ 289 (542)
T COG2303 212 AL-KRPNLTLLTGARVRRILLE-GDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDV 289 (542)
T ss_pred Hh-cCCceEEecCCEEEEEEEE-CCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCCCchhhhhhcCCee
Confidence 88 9999999999999999999 899999999874332 34444547999999999999999999999999999999999
Q ss_pred eeecc-ccccccccccccccEEEecCCCcccc-----chHHHHHHHHhcCCCCccccccccEEEEEeCCCCCCCCchhhh
Q psy14407 245 KQDLR-VGENLKLNAQFTGPVMAFSAPLKRTV-----YSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIH 318 (522)
Q Consensus 245 ~~~~p-VG~~l~dh~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~p~~~~~ 318 (522)
+.++| ||+||+||.... +.+.......... ........|...+.|+...... ..+|.........|+++.+
T Consensus 290 v~~~~~vg~nl~dH~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~--~~gf~~~~~~~~~p~~~~~ 366 (542)
T COG2303 290 VGRLPGVGQNLQDHLEIY-VAFEATEPTNDSVLSLFSKLGIGADRYLLTRDGPGATNHF--EGGFVRSGPAGEYPDGQYH 366 (542)
T ss_pred eecCcchhHHHHhhhhhh-hheeccCccccccccccccccccceeEEeecCCCcccccc--cccccccCccccCCCcccc
Confidence 99999 999999999985 7777665520000 0111113344445666654321 2236666555567888777
Q ss_pred hhhcccccchhhhhHhhhcccchHHHHHHhhcCCCCCeEEEEEeecccCcceEEEecCCCCCCCceeecCCCCChHHHHH
Q psy14407 319 LLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLAT 398 (522)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~ 398 (522)
+.+..... ........+++.....+|.++|.|.+.+.||...|.|+++|..++.|+..
T Consensus 367 ~~~~~~~~----------------------~~~~~~~~~~~~~~~~rp~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~ 424 (542)
T COG2303 367 FAPLPLAI----------------------RAAGAEHGFTLHVGPMRPKSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAI 424 (542)
T ss_pred cccccccc----------------------cccccCCccEEeeccCCCccccceecCCCCCcCCcccCccccCchhHHHH
Confidence 65433200 01122456777777899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcChhHHhhcccccccCCccCCCCCCCCHHHHHHHHHhhCCCCCcccccccccCCCCCCcccCCCCcee
Q psy14407 399 LIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVK 478 (522)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~rMG~~~~~~~VVD~~~rv~ 478 (522)
+.++++..++++.+..+......+.. +. ..+.+++++..|++....+.+|++||||||.|+. .+|+|++||||
T Consensus 425 ~~~~~~~~r~i~~~~~~~~~~~~e~~-~~-----~~~~~~~~~~~~~~~~~~t~~H~~GT~rMG~Dp~-~~V~d~~lrv~ 497 (542)
T COG2303 425 FRAGIRLTREIIGQPALDARRKAELA-PG-----PRVTTDEDISAAIRFLARTAYHPMGTCRMGSDPA-AVVDDPYLRVH 497 (542)
T ss_pred HHHHHHHHHHHhcCccchhhHHHhhc-CC-----CccccHHHHHHHHHhccCccccccccccCCCCch-hhccccccccc
Confidence 99999999999986555544333321 22 2357788999999999999999999999998864 36667999999
Q ss_pred CcCCceEecccCCCCCCCchhHHHHHHHHHHHHHHHhhh
Q psy14407 479 GIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTS 517 (522)
Q Consensus 479 g~~NL~V~DaSv~P~~~~~NPtlTi~Ala~r~Ad~i~~~ 517 (522)
|++||||+|+|+||+++++||++||+|||+|+||+|+++
T Consensus 498 g~~nL~VvDaSvmPt~~~~Np~~ti~ala~raA~~I~~~ 536 (542)
T COG2303 498 GLENLRVVDASVMPTSTGVNPNLTIIALAERAADHILGD 536 (542)
T ss_pred cCCCeEEeCcccCcCccCCCccHhHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999974
No 5
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=9.5e-68 Score=562.91 Aligned_cols=452 Identities=21% Similarity=0.286 Sum_probs=319.7
Q ss_pred CCcccceeecccccCcccCCCCceeeeecCcccchhhHhhcceeecCChhhHHHHHHhCCCCCCchhhHHHHHHhccCCC
Q psy14407 7 LSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRS 86 (522)
Q Consensus 7 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~vGGsS~~n~~~~~r~~~~df~~w~~~g~~~w~~~~l~pyy~~~e~~~~ 86 (522)
...+||.|.+.+|. ...++++.+.|||+|||||.||+|+|.|++++||+ ..+|+|+++.|||+++|+...
T Consensus 103 ~~~~d~~~~~~~q~----~~~~~~~~~~rGr~LGGsS~iN~~~y~Rg~~~d~~------~~GW~~~~~~~~~~~~e~~~~ 172 (587)
T PLN02785 103 IGLADTSPTSASQA----FISTDGVINARARVLGGGTCINAGFYSRASTRFIQ------KAGWDAKLVNESYPWVERQIV 172 (587)
T ss_pred CcccccCCcccccc----ccCCCceeccccceecchhhhcCeEEEeCCHHHhc------cCCCCcccccchHHHHhcccc
Confidence 34579999999997 45678899999999999999999999999999996 357999999999999998631
Q ss_pred CCCCCCCCCcCCCCcEeeecCCCCCCchHHHHHHHHHHHcCCCCCCCCCCCCcccceeeecccc--cCCeecchhhhhcc
Q psy14407 87 VIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMT--RYGLRFSAADAYLT 164 (522)
Q Consensus 87 ~~~~~~~~~~g~~gp~~v~~~~~~~~~~~~~~~~~a~~~~G~~~~~~~n~~~~~~G~~~~~~~~--~~g~R~s~~~~~l~ 164 (522)
. .+.. .+....|.++++++|++....++... ..|. .+..++ ..|.|++++. ++
T Consensus 173 ~-------------------~~~~--~~~~~~~~~a~~e~G~~~~n~~~~d~-~~G~-~~g~~i~~~~g~R~saa~-l~- 227 (587)
T PLN02785 173 H-------------------WPKV--APWQAALRDSLLEVGVSPFNGFTYDH-VYGT-KVGGTIFDEFGRRHTAAE-LL- 227 (587)
T ss_pred c-------------------CCCc--ChHHHHHHHHHHHcCCCccCCCCCCC-ccce-eeeEEEeCCCCEEcCHHH-HH-
Confidence 1 0112 57788999999999997432221111 1111 111223 4689998875 55
Q ss_pred cccCCCCCeEEEcCcEEEEEEecC-C--CeEEEEEEEecCCeEEEE----EeCcEEEEcCcchhhhHHHHHhCCCChhhh
Q psy14407 165 PIAGKRTNLYVLKRSKVTKVIIND-Q--NVATGVEYVNSKGETVRV----TANKEVILTAGAIANAQLLLLSGIGPKAHL 237 (522)
Q Consensus 165 ~~~~~~~n~~v~~~~~V~~I~~~~-~--~~a~gV~~~~~~g~~~~v----~A~k~VILaaGai~Tp~LLl~SGig~~~~l 237 (522)
++. .++|++|++++.|+||++++ + ++|+||++.+.+|..+++ +++|+||||||+|+||+|||+|||||+++|
T Consensus 228 ~~~-~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L 306 (587)
T PLN02785 228 AAG-NPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKEL 306 (587)
T ss_pred hhc-CCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHH
Confidence 455 78999999999999999982 2 389999998866765554 256899999999999999999999999999
Q ss_pred hhCCCCceeecc-ccccccccccccccEEEecCCCccccchHHHHHHHHhcCCCCccccccccEEEEEeCCCCCCCCchh
Q psy14407 238 DEVKIPVKQDLR-VGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLE 316 (522)
Q Consensus 238 ~~~gi~~~~~~p-VG~~l~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~p~~~ 316 (522)
+++||+++.|+| ||+||+||+... +.+..+.+.... ....+.....|++.... .++.... ..+.
T Consensus 307 ~~~gIpvv~dlP~VG~NL~DHp~~~-i~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~----~~~~~~~-----~~~~ 371 (587)
T PLN02785 307 KKHKIPVVLHNEHVGKGMADNPMNS-IFVPSKAPVEQS-----LIQTVGITKMGVYIEAS----SGFGQSP-----DSIH 371 (587)
T ss_pred HHcCCCeeecCCCcccchhhCcccc-eEEEeCCCchhh-----hHhhhhhhccccceecc----cccccCc-----hhhh
Confidence 999999999999 999999999985 777765542111 01111111223321100 0010000 0000
Q ss_pred hhhhhcccccchhhhhHhhhcccchHHHHHHhh---cCC--CCCeEEEEEeecccCcceEEEecCCCCCCCceeecCCCC
Q psy14407 317 IHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVN---LNK--RTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILS 391 (522)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~ 391 (522)
....+... .............. .+....+.. ... ......+...++.|.|||+|+|.++||++.|.|+++|+.
T Consensus 372 ~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~SrG~V~L~ssdp~~~P~i~~ny~~ 449 (587)
T PLN02785 372 CHHGIMSA-EIGQLSTIPPKQRT-PEAIQAYIHRKKNLPHEAFNGGFILEKIAGPISTGHLSLINTNVDDNPSVTFNYFK 449 (587)
T ss_pred hhcccccc-ccccccccCccccc-chhhhhhccCcccccccccccceEEEEecCCCcceEEEecCCCCCcCCccccccCC
Confidence 00000000 00000000000000 000000000 000 001112334567999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhcChhHHhhccccccc--CCc---------cCCCCCCCCHHHHHHHHHhhCCCCCccccccc
Q psy14407 392 EPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSL--NLE---------ACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVM 460 (522)
Q Consensus 392 ~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p---------~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~r 460 (522)
+|.|++.++++++.+++++++.+++.+...+..+ .+. -++. ...+++++++|++....+.+|++|||+
T Consensus 450 ~p~Dl~~~~~g~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~d~~l~~~ir~~~~t~~H~~GTc~ 528 (587)
T PLN02785 450 HPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLNMSVKANINLIPK-HTNDTKSLEQFCKDTVITIWHYHGGCH 528 (587)
T ss_pred CHHHHHHHHHHHHHHHHHHcChhhhhhccccccccccccccccccccccCCC-CCCCHHHHHHHHHHhcccccCCccccc
Confidence 9999999999999999999998887764221110 000 0011 136788999999999999999999999
Q ss_pred ccCCCCCCcccCCCCceeCcCCceEecccCCCCCCCchhHHHHHHHHHHHHHHHhhhc
Q psy14407 461 MGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSY 518 (522)
Q Consensus 461 MG~~~~~~~VVD~~~rv~g~~NL~V~DaSv~P~~~~~NPtlTi~Ala~r~Ad~i~~~~ 518 (522)
|| +|||+++||||++||||||+|+||..|++||++|+||||+|+|++|+++.
T Consensus 529 MG------~VVD~~lrV~GV~~LRVvDaSi~P~~p~~np~atv~miaer~A~~Il~~~ 580 (587)
T PLN02785 529 VG------KVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMGRYMGVKILRER 580 (587)
T ss_pred CC------CeECCCCeEeccCCeEEeecccCCCCCCCccHHHHHHHHHHHHHHHHHHh
Confidence 99 79999999999999999999999999999999999999999999999764
No 6
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=100.00 E-value=8.1e-51 Score=424.49 Aligned_cols=417 Identities=15% Similarity=0.158 Sum_probs=262.2
Q ss_pred eecCcccchhhHhhcceeecCChhhHHHHHHh-CCCCCCchhhHHHHHHhccCCCCCCCCCCCCcCCCCcEeeecCCCCC
Q psy14407 33 ITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKE 111 (522)
Q Consensus 33 ~~~g~~vGGsS~~n~~~~~r~~~~df~~w~~~-g~~~w~~~~l~pyy~~~e~~~~~~~~~~~~~~g~~gp~~v~~~~~~~ 111 (522)
..+-|+|||+|+||++.|.|++|++- ... .+|+++|+||+|||+++|+++++++.. . .++..
T Consensus 111 ~ar~R~vGGsS~hW~g~~~R~~p~~r---~g~~~dWPI~y~eL~PyY~~Ae~~~gv~g~~------~-------~~~~~- 173 (544)
T TIGR02462 111 EAVTRGVGGMSTHWTCATPRFHREER---PKLSDDAAEDDAEWDRLYTKAESLIGTSTDQ------F-------DESIR- 173 (544)
T ss_pred hheeeccCchhhhcCcccCCCCHHhc---cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCc------C-------CCccc-
Confidence 45789999999999999999999642 222 245669999999999999999887421 0 00111
Q ss_pred CchHHHHHHHHHHHcCC-CCCCCCCCCCcccceeeecccccCCeecchhhhhcccccC---CCCCeEEEcCcEEEEEEec
Q psy14407 112 NNIIREIFETSAQELGY-PCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAG---KRTNLYVLKRSKVTKVIIN 187 (522)
Q Consensus 112 ~~~~~~~~~~a~~~~G~-~~~~~~n~~~~~~G~~~~~~~~~~g~R~s~~~~~l~~~~~---~~~n~~v~~~~~V~~I~~~ 187 (522)
.......+.++++ |. ..... ...|..+ .|..++|+|+..+.+..+.. .++|++|++++.|++|+++
T Consensus 174 ~~~~~~~~~~~~~--g~~~~~~~------PlA~~~~--~c~~~ak~s~~~t~~~~~~~~~~~~~n~~l~~~a~v~~i~~d 243 (544)
T TIGR02462 174 HNLVLRKLQDEYK--GQRDFQPL------PLACHRR--TDPTYVEWHSADTVFDLQPNDDAPSERFTLLTNHRCTRLVRN 243 (544)
T ss_pred chhHHHHHHHHhc--cccccccC------chhhhcc--CCCccceecCCccchhhhhhhhccCCCEEEEcCCEEEEEEeC
Confidence 0233334444443 33 11111 1112121 35568899877676755441 3899999999999999998
Q ss_pred -CC-CeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhhhHHHHHhCCCChhhhhhCCCCceeecc-cccccccccccccc
Q psy14407 188 -DQ-NVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGENLKLNAQFTGP 263 (522)
Q Consensus 188 -~~-~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~Tp~LLl~SGig~~~~l~~~gi~~~~~~p-VG~~l~dh~~~~~~ 263 (522)
++ ++|++|+|.+. +|+.++++|+ .||||||+|+||||||+|+++........+ -...++ ||||||+|+... +
T Consensus 244 ~~~~~~v~~v~~~d~~~g~~~~v~A~-~vVLAagaIetpRLLL~S~~~~~~~p~gl~--Nss~~g~VGRnlmdh~~~~-~ 319 (544)
T TIGR02462 244 ETNESEIEAALVRDLLSGDRFEIKAD-VYVLACGAVHNPQILVNSGFGQLGRPDPTN--PPPLLPSLGRYITEQSMTF-C 319 (544)
T ss_pred CCCCceeEEEEEEECCCCcEEEEECC-EEEEccCchhhHHHHHhCCCCCCcCCCCcC--CCCCCCCCCcchhcCCCcc-E
Confidence 34 68999999997 6888999995 899999999999999999997533221111 000137 999999999884 7
Q ss_pred EEEecCCC---ccccchHHHHHHHHhcCCCC-ccc-cccccEEEEEeCCCCCCCCchhhhhhhcccccchhhhhHhhhcc
Q psy14407 264 VMAFSAPL---KRTVYSQEMVFKYLVNRIGP-LSN-AGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYD 338 (522)
Q Consensus 264 ~~~~~~~~---~~~~~~~~~~~~~~~~~~g~-~~~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (522)
.+.++++. +.+... ..+|....... ... ........|-. ..|.. ..+.......+.......+.
T Consensus 320 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~~~~---~~~~~~~~~w~~~~~~~~~~ 388 (544)
T TIGR02462 320 QIVLSTELVDSVRSDPR---GLDWWKEKVANHMMKHPEDPLPIPFRD-----PEPQV---TTPFTEEHPWHTQIHRDAFS 388 (544)
T ss_pred EEEecchhhhhccCCcc---ccccccccchhhhccccCCcccccccc-----cCccc---ccccccccccchhhhhhhhh
Confidence 77776541 111000 00110000000 000 00000000000 00000 00000000000000000000
Q ss_pred cchHHHHHHhhcCCCCCeEEE-EEeecccCcceEEEecC--CCCCCCceeecCCCCChHHHHHHHHHHHHHHHHhcChhH
Q psy14407 339 FNDEVQTAYVNLNKRTDMGVI-SMSLVNPKSCGKVTLKS--ADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAI 415 (522)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~s~g~v~l~~--~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 415 (522)
+.. ..+.......+.+ ...+..|...++|+|++ +|.+|+|++.+.|..+++|++.+..+.+.+.+++...
T Consensus 389 ~g~-----~~~~~~~~~~v~l~~~~e~lP~~~NrV~Ld~~~~D~~G~P~~~i~~~~~~~d~~~~~~~~~~~~~i~~~~-- 461 (544)
T TIGR02462 389 YGA-----VGPSIDSRVIVDLRFFGRTEPKEENKLVFQDKVTDTYNMPQPTFDFRFSAADSKRARRMMTDMCNVAAKI-- 461 (544)
T ss_pred ccc-----ccccccccceeeEEEEeccCCCCCCeEEcCCCCcCCCCCeeEEEEEeCCHHHHHHHHHHHHHHHHHHHHc--
Confidence 000 0000111112222 23457899999999975 5999999999999999999999999999999987653
Q ss_pred HhhcccccccCCccCCCCCCCCHHHHHHHHHhhCCCCCcccccccccCCCCCCcccCCCCceeCcCCceEecccCCCCCC
Q psy14407 416 RLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAI 495 (522)
Q Consensus 416 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~rMG~~~~~~~VVD~~~rv~g~~NL~V~DaSv~P~~~ 495 (522)
+..... ..+ .+ .....+.|++||||||.++. ++|||++|||||++||||+|+|+||+++
T Consensus 462 ---G~~~~~-~~~--------------~~--~~~~~~~H~~Gt~rMG~dp~-~sVvd~~~rv~g~~NL~V~d~s~~Pt~~ 520 (544)
T TIGR02462 462 ---GGYLPG-SLP--------------QF--MEPGLALHLAGTTRIGFDEQ-TTVANTDSKVHNFKNLYVGGNGNIPTAF 520 (544)
T ss_pred ---CCCccc-ccc--------------cc--cCCCccccCCCCeecCCCCC-CceECCCCcEeCCCCeEEeccCcCCCCC
Confidence 221110 000 00 01235789999999998864 5999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHhhhcC
Q psy14407 496 ITQSDAISYMIGEKCADLVKTSYN 519 (522)
Q Consensus 496 ~~NPtlTi~Ala~r~Ad~i~~~~~ 519 (522)
++|||+|+||+|+|+|++|+++++
T Consensus 521 ~~nPtlTi~ala~r~a~~i~~~~~ 544 (544)
T TIGR02462 521 GANPTLTSMCYAIKSAEYIINNFG 544 (544)
T ss_pred CCCcHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999998864
No 7
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=4.9e-46 Score=369.74 Aligned_cols=242 Identities=41% Similarity=0.624 Sum_probs=202.6
Q ss_pred CCCCcccceeecccccCcccCCCCceeeeecCcccchhhHhhcceeecCChhhHHHHHHh-CCCCCCchhhHHHHHHhcc
Q psy14407 5 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKSED 83 (522)
Q Consensus 5 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~vGGsS~~n~~~~~r~~~~df~~w~~~-g~~~w~~~~l~pyy~~~e~ 83 (522)
.+.+.++|.|.+.++. ...++.+.+++|++|||||+||+|+++|++++||+.|... |.++|+|++|+|||+++|+
T Consensus 50 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~ 125 (296)
T PF00732_consen 50 DFDSEYDWGYYSGPQP----FLNGRTINWPRGKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAET 125 (296)
T ss_dssp CTTTTTBBGEEECEEE----CTTTTSEEEEEB-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEE
T ss_pred ccCccccccccccccc----ccccceeeeecceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHh
Confidence 3467789999999998 4688889999999999999999999999999999999986 7888999999999999999
Q ss_pred CCCCCCCCCCCCcCCCCcEee-ecCCCCCCchHHHHHHHHHHHcCCCCCCCCCCCCcccceeeecccccCCeecchhhhh
Q psy14407 84 YRSVIYNESKAVHGTQGYLPV-GLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAY 162 (522)
Q Consensus 84 ~~~~~~~~~~~~~g~~gp~~v-~~~~~~~~~~~~~~~~~a~~~~G~~~~~~~n~~~~~~G~~~~~~~~~~g~R~s~~~~~ 162 (522)
+.+++ ...|+..+|+++ ..++.. .+....|.++++++|++...+++.+. .+|++.+.+.|++|+|+|+..+|
T Consensus 126 ~~~~~----~~~~g~~~~~~v~~~~~~~--~~~~~~~~~a~~~~G~~~~~~~~~~~-~~g~~~~~~~~~~g~r~s~~~~~ 198 (296)
T PF00732_consen 126 FLGPS----SDLHGVDGPLPVSSSPPYP--SPMNQALMDAAEELGIPVPQDFNGCD-PCGFCMTGFNCPNGARSSAATTY 198 (296)
T ss_dssp EHTTB----GGGSCBSSSEEEHHHCSCH--CTHHHHHHHHHHHTTHHBCSCTTSST-CSEEEECEECECTTCBBHHHHHH
T ss_pred hcccc----ccccccccccccccccCCC--CHHHHHHHHHHHHcCCcccccccccc-ccccccccccccchhceehhhcc
Confidence 98877 677888999999 344555 68889999999999999666777665 66665554458999999999999
Q ss_pred cccccCCCCCeEEEcCcEEEEEEec-CCCeEEEEEEEecCCe--EEEEEeCcEEEEcCcchhhhHHHHHhCCCChhhhhh
Q psy14407 163 LTPIAGKRTNLYVLKRSKVTKVIIN-DQNVATGVEYVNSKGE--TVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDE 239 (522)
Q Consensus 163 l~~~~~~~~n~~v~~~~~V~~I~~~-~~~~a~gV~~~~~~g~--~~~v~A~k~VILaaGai~Tp~LLl~SGig~~~~l~~ 239 (522)
|.+++ +++|++|+++|+|+||+++ ++++|+||++.+.++. .+.+.+ |+||||||||+||+|||+||||+.++|++
T Consensus 199 L~~a~-~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~a-k~VIlaAGai~Tp~LLl~SGiG~~~~L~~ 276 (296)
T PF00732_consen 199 LPPAL-KRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAA-KEVILAAGAIGTPRLLLRSGIGPKDHLDA 276 (296)
T ss_dssp HHHHT-TTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEE-EEEEE-SHHHHHHHHHHHTTEE-HHHHHH
T ss_pred cchhh-ccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccc-eeEEeccCCCCChhhhcccccccHHHHHH
Confidence 99998 8889999999999999997 6889999999997555 344555 79999999999999999999999999999
Q ss_pred CCCCceeecccccccccccc
Q psy14407 240 VKIPVKQDLRVGENLKLNAQ 259 (522)
Q Consensus 240 ~gi~~~~~~pVG~~l~dh~~ 259 (522)
+||+++.++|||+||+||+.
T Consensus 277 ~gi~~~~~lpVG~nl~dH~~ 296 (296)
T PF00732_consen 277 LGIPVVVDLPVGRNLQDHPV 296 (296)
T ss_dssp TTHHHSEE-TTTECEB--EE
T ss_pred cCCCceeeCcchhchhcccC
Confidence 99999999999999999983
No 8
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=100.00 E-value=1.6e-34 Score=255.50 Aligned_cols=143 Identities=36% Similarity=0.559 Sum_probs=118.6
Q ss_pred cCcceEEEecCCCCCCCceeecCCCCChHHHHHHHHHHHHHHHHhcChhHHhhcccccc-cCCccCCCCCCCCHHHHHHH
Q psy14407 366 PKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMS-LNLEACSQYPWRSTHSWTCY 444 (522)
Q Consensus 366 p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~ 444 (522)
|.|+|+|+|+++||++.|.|+++|+.+++|++.+.++++.++++++.. ++.++..... ...+.+......++++++++
T Consensus 1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (144)
T PF05199_consen 1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELLPGPSPFCPDASLDSDEDLECY 79 (144)
T ss_dssp -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEESCGCSCCGCSTTTCHHHHHHH
T ss_pred CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hcccccccccccccccccccccccchhhhhh
Confidence 789999999999999999999999999999999999999999999987 7666533321 12233344456788999999
Q ss_pred HHhhCCCCCcccccccccCCCCCCcccCCCCceeCcCCceEecccCCCCCCCchhHHHHHHHHHHH
Q psy14407 445 IRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKC 510 (522)
Q Consensus 445 ~~~~~~~~~H~~Gt~rMG~~~~~~~VVD~~~rv~g~~NL~V~DaSv~P~~~~~NPtlTi~Ala~r~ 510 (522)
++....+++|++||||||++++. +|||++|||||++||||+|+|+||+++++||++|+||||+||
T Consensus 80 ~~~~~~~~~H~~Gt~~mG~~~~~-~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 80 IRQNVGTSWHPSGTCRMGPDPDT-SVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp HHHHGEECSS-BETT-BTSSTTT-TSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred eeeccceecccccceeccccCCc-eeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 99999999999999999999876 999999999999999999999999999999999999999997
No 9
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.22 E-value=0.00071 Score=73.51 Aligned_cols=63 Identities=22% Similarity=0.312 Sum_probs=51.7
Q ss_pred cccccCCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhh-hHHHH
Q psy14407 163 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN-AQLLL 227 (522)
Q Consensus 163 l~~~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~T-p~LLl 227 (522)
|..++ +..|++|++++.|++|+.+++++|+||.+.. +|+.++++|+|.||||+|+++. +.++.
T Consensus 219 l~~~~-~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~-~~~~~~i~a~~aVilAtGGf~~N~em~~ 282 (584)
T PRK12835 219 LRLAL-KDAGVPLWLDSPMTELITDPDGAVVGAVVER-EGRTLRIGARRGVILATGGFDHDMDWRK 282 (584)
T ss_pred HHHHH-HhCCceEEeCCEEEEEEECCCCcEEEEEEEe-CCcEEEEEeceeEEEecCcccCCHHHHH
Confidence 44445 6789999999999999997457899999876 7888899997679999999986 44443
No 10
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.08 E-value=0.0013 Score=70.36 Aligned_cols=63 Identities=21% Similarity=0.352 Sum_probs=50.9
Q ss_pred hcccccCCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHH
Q psy14407 162 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL 227 (522)
Q Consensus 162 ~l~~~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl 227 (522)
++..+. ++++++|+++++|++|+.+ +++|+||++.. +|+.++++|+|.||||+|.++.-+-|+
T Consensus 179 l~~~~~-~~~gv~i~~~t~~~~Li~~-~g~v~Gv~~~~-~g~~~~i~A~k~VIlAtGG~~~n~~m~ 241 (513)
T PRK12837 179 FLAALA-RFPNARLRLNTPLVELVVE-DGRVVGAVVER-GGERRRVRARRGVLLAAGGFEQNDDMR 241 (513)
T ss_pred HHHHHH-hCCCCEEEeCCEEEEEEec-CCEEEEEEEEE-CCcEEEEEeCceEEEeCCCccCCHHHH
Confidence 444444 5579999999999999987 78999999876 788899999778999999997544443
No 11
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.87 E-value=0.0022 Score=69.35 Aligned_cols=59 Identities=24% Similarity=0.393 Sum_probs=50.6
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHHh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLS 229 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~S 229 (522)
++.+++|+++++|++|+.+ +++|+||++.. +|+.++++|++.||||+|.+++-+-|+..
T Consensus 219 ~~~gv~v~~~t~v~~l~~~-~g~v~Gv~~~~-~g~~~~i~A~~~VIlAtGG~~~n~~m~~~ 277 (557)
T PRK07843 219 QRAGVPVLLNTPLTDLYVE-DGRVTGVHAAE-SGEPQLIRARRGVILASGGFEHNEQMRAK 277 (557)
T ss_pred HcCCCEEEeCCEEEEEEEe-CCEEEEEEEEe-CCcEEEEEeceeEEEccCCcCcCHHHHHH
Confidence 5779999999999999987 67999999876 78888999976799999999986666553
No 12
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.73 E-value=0.0035 Score=67.78 Aligned_cols=57 Identities=19% Similarity=0.352 Sum_probs=49.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL 227 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl 227 (522)
.+.+++|+++++|++|+.+ +++|+||++.. +|+.++++|+|.||||+|.++...=|+
T Consensus 219 ~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~-~g~~~~i~A~~aVIlAtGG~~~N~em~ 275 (557)
T PRK12844 219 LAAGVPLWTNTPLTELIVE-DGRVVGVVVVR-DGREVLIRARRGVLLASGGFGHNAEMR 275 (557)
T ss_pred HhCCCEEEeCCEEEEEEEe-CCEEEEEEEEE-CCeEEEEEecceEEEecCCccCCHHHH
Confidence 5779999999999999987 78999999976 788889999768999999998754443
No 13
>PRK07121 hypothetical protein; Validated
Probab=96.48 E-value=0.0069 Score=64.65 Aligned_cols=59 Identities=29% Similarity=0.431 Sum_probs=48.4
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLL 228 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~ 228 (522)
++.+++|+.+++|++|+.+++++++||++.+ +++.++++|+|.||||+|.+..-+-|++
T Consensus 188 ~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-~~~~~~i~a~k~VVlAtGg~~~N~em~~ 246 (492)
T PRK07121 188 AALGVQIRYDTRATRLIVDDDGRVVGVEARR-YGETVAIRARKGVVLAAGGFAMNREMVA 246 (492)
T ss_pred HhCCCEEEeCCEEEEEEECCCCCEEEEEEEe-CCcEEEEEeCCEEEECCCCcCcCHHHHH
Confidence 5678999999999999987456899999976 6777889996689999999876544444
No 14
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.30 E-value=0.009 Score=64.61 Aligned_cols=56 Identities=21% Similarity=0.349 Sum_probs=47.6
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 226 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LL 226 (522)
.+.+++|++++.|++|+.+ +++|+||.+.. +|+++.+.|+|.||||+|.++...=|
T Consensus 228 ~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~-~g~~~~i~a~kaVILAtGGf~~n~em 283 (564)
T PRK12845 228 LRAGIPIWTETSLVRLTDD-GGRVTGAVVDH-RGREVTVTARRGVVLAAGGFDHDMEM 283 (564)
T ss_pred HHCCCEEEecCEeeEEEec-CCEEEEEEEEE-CCcEEEEEcCCEEEEecCCccccHHH
Confidence 4678999999999999876 67999998876 77788899988899999999865433
No 15
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=96.29 E-value=0.015 Score=60.64 Aligned_cols=57 Identities=32% Similarity=0.450 Sum_probs=45.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhhhHHHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLL 228 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~Tp~LLl~ 228 (522)
+..+++|+.+++|++|+.+ +++|+||++.+. +|+.++++|+ .||||+|.++. .++.+
T Consensus 152 ~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~-aVIlAtGG~~~-~~~~~ 209 (417)
T PF00890_consen 152 EEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAK-AVILATGGFGG-ELLRQ 209 (417)
T ss_dssp HHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEES-EEEE----BGG-HHHHH
T ss_pred hhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeee-EEEeccCcccc-ccccc
Confidence 4556999999999999998 679999999954 8999999996 89999999999 44433
No 16
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=96.26 E-value=0.016 Score=59.36 Aligned_cols=61 Identities=30% Similarity=0.293 Sum_probs=49.8
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhhhHHHHHhCCC
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIG 232 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~Tp~LLl~SGig 232 (522)
+.+|++|..+++|+.|...+++ -..|.+++. +|+..+++| +-|+|.||+ ++=.||+.|||.
T Consensus 193 ~~~~~~~~~~~eV~~i~r~~dg-~W~v~~~~~~~~~~~~v~a-~FVfvGAGG-~aL~LLqksgi~ 254 (488)
T PF06039_consen 193 KQKGFELHLNHEVTDIKRNGDG-RWEVKVKDLKTGEKREVRA-KFVFVGAGG-GALPLLQKSGIP 254 (488)
T ss_pred hCCCcEEEecCEeCeeEECCCC-CEEEEEEecCCCCeEEEEC-CEEEECCch-HhHHHHHHcCCh
Confidence 5679999999999999987222 345666654 788899999 589999998 788999999984
No 17
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=96.06 E-value=0.013 Score=62.16 Aligned_cols=63 Identities=22% Similarity=0.308 Sum_probs=52.5
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHHhCCCC
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP 233 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~SGig~ 233 (522)
.+.+++++.+++|++|+.+ ++++++|.+.+.+|+...++| |.||||+|.+.+.+.|+.+-+++
T Consensus 142 ~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~~~g~~~~i~a-~~VIlAtGg~~~n~~~~~~~~~~ 204 (466)
T PRK08274 142 ERLGVEIRYDAPVTALELD-DGRFVGARAGSAAGGAERIRA-KAVVLAAGGFESNREWLREAWGQ 204 (466)
T ss_pred HHCCCEEEcCCEEEEEEec-CCeEEEEEEEccCCceEEEEC-CEEEECCCCCCCCHHHHHhhcCC
Confidence 4678999999999999887 678999998644677778999 58999999999988888765543
No 18
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=95.99 E-value=0.015 Score=63.40 Aligned_cols=58 Identities=14% Similarity=0.215 Sum_probs=48.1
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLL 228 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~ 228 (522)
.+.+++|+.++.|++|+.+ +++++||.+.+ ++..++++|+|.||||+|++..-.-|+.
T Consensus 228 ~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~-~~~~~~i~a~k~VVlAtGg~~~n~~~~~ 285 (581)
T PRK06134 228 EDLGVRIWESAPARELLRE-DGRVAGAVVET-PGGLQEIRARKGVVLAAGGFPHDPARRA 285 (581)
T ss_pred HhCCCEEEcCCEEEEEEEe-CCEEEEEEEEE-CCcEEEEEeCCEEEEcCCCcccCHHHHH
Confidence 5678999999999999887 78999999876 5666789996689999999987555543
No 19
>PRK12839 hypothetical protein; Provisional
Probab=95.88 E-value=0.019 Score=62.28 Aligned_cols=65 Identities=15% Similarity=0.052 Sum_probs=50.0
Q ss_pred CCCCcccccccccCCCCCCcccCCCCceeCcCCceEecc---cCCCC-C-CCchhHHHHHHHHHHHHHHHhhhcC
Q psy14407 450 TTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADI---SVLPN-A-IITQSDAISYMIGEKCADLVKTSYN 519 (522)
Q Consensus 450 ~~~~H~~Gt~rMG~~~~~~~VVD~~~rv~g~~NL~V~Da---Sv~P~-~-~~~NPtlTi~Ala~r~Ad~i~~~~~ 519 (522)
....|-+|+.+.-.+ .-|+|.++++ ++|||.++. +++-. - .+++.....+..+..|+++++++-+
T Consensus 500 p~~~~T~GGl~in~~---~qVLd~dg~p--IpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~~~~ 569 (572)
T PRK12839 500 PGSFGTFAGLVADGK---SRVLRDDDTP--IDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAGSTG 569 (572)
T ss_pred ccccccCCCccCCCC---ceEECCCCCC--cCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHhccc
Confidence 346778888888754 3899999997 999999984 45532 1 2577788889999999999987654
No 20
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=95.71 E-value=0.024 Score=61.72 Aligned_cols=58 Identities=19% Similarity=0.303 Sum_probs=48.6
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLL 228 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~ 228 (522)
.+.+++|+.++.|++|+.+ +++|+||++.. +|+.+++.|++.||||+|+++.-.=|++
T Consensus 232 ~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~-~g~~~~i~A~~~VVlAtGg~~~n~em~~ 289 (578)
T PRK12843 232 RARGVRILTQTDVESLETD-HGRVIGATVVQ-GGVRRRIRARGGVVLATGGFNRHPQLRR 289 (578)
T ss_pred HhCCCEEEeCCEEEEEEee-CCEEEEEEEec-CCeEEEEEccceEEECCCCcccCHHHHH
Confidence 5678999999999999887 68999999876 7788889986789999999987544443
No 21
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.70 E-value=0.05 Score=58.82 Aligned_cols=53 Identities=21% Similarity=0.434 Sum_probs=45.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEe-cCCeEEEEEeCcEEEEcCcchhh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVN-SKGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaaGai~T 222 (522)
.+.+++|+.++.|++|+.+++++++||.+.+ .+|..+.++| |.||||+|.++.
T Consensus 145 ~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~A-kaVIlATGG~~~ 198 (543)
T PRK06263 145 IKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYA-KATILATGGAGQ 198 (543)
T ss_pred hcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEc-CcEEECCCCCCC
Confidence 4689999999999999887455699998876 4788889999 589999999874
No 22
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.57 E-value=0.028 Score=61.07 Aligned_cols=53 Identities=21% Similarity=0.314 Sum_probs=46.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~T 222 (522)
.+.+++|+.++.|++|+.+++++|.||.+.+. +|+.+.+.| |.||||+|.++.
T Consensus 137 ~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 190 (570)
T PRK05675 137 LKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKS-KATVLATGGAGR 190 (570)
T ss_pred hccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEec-CeEEECCCCccc
Confidence 46789999999999999864679999998764 788889999 589999999885
No 23
>PRK06175 L-aspartate oxidase; Provisional
Probab=95.54 E-value=0.029 Score=58.82 Aligned_cols=51 Identities=24% Similarity=0.456 Sum_probs=43.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~T 222 (522)
++.|++|+.++.|++|+.+ +++++||.+.+ ++..+++.| |.||||+|+++.
T Consensus 140 ~~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~-~g~~~~i~A-k~VILAtGG~~~ 190 (433)
T PRK06175 140 KRKNITIIENCYLVDIIEN-DNTCIGAICLK-DNKQINIYS-KVTILATGGIGG 190 (433)
T ss_pred hcCCCEEEECcEeeeeEec-CCEEEEEEEEE-CCcEEEEEc-CeEEEccCcccc
Confidence 4679999999999999887 67899988766 666678999 579999999764
No 24
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=95.52 E-value=0.034 Score=60.70 Aligned_cols=52 Identities=27% Similarity=0.291 Sum_probs=44.3
Q ss_pred CCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhh
Q psy14407 170 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 170 ~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~T 222 (522)
..|++|+.++.|++|+.+++++|+||.+.+. +|+...+.| |.||||+|.++.
T Consensus 145 ~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~A-kaVVLATGG~g~ 197 (603)
T TIGR01811 145 AGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSA-DAVILATGGYGN 197 (603)
T ss_pred cCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEc-CEEEECCCCCcC
Confidence 4689999999999999864569999999875 677788999 589999999864
No 25
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.51 E-value=0.074 Score=57.74 Aligned_cols=51 Identities=12% Similarity=0.164 Sum_probs=44.5
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA 221 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~ 221 (522)
.+.+++++.++.|++|+.+ +++|+||.+.+. +|+.+.++| |.||||+|.++
T Consensus 147 ~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~ 198 (566)
T PRK06452 147 SGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKT-KAVVLATGGMG 198 (566)
T ss_pred HhCCCEEEeCcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEe-CeEEECCCccc
Confidence 3568999999999999987 789999999875 567788999 68999999987
No 26
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=95.41 E-value=1.9 Score=46.18 Aligned_cols=54 Identities=22% Similarity=0.223 Sum_probs=42.5
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLL 228 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~ 228 (522)
.+.+.+|+.++.|++|..+ ++++++|++.+ |+ ++.|+ .||+|++...+...|+.
T Consensus 230 ~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~--g~--~~~ad-~VI~a~~~~~~~~~l~~ 283 (502)
T TIGR02734 230 EDLGGELRLNAEVIRIETE-GGRATAVHLAD--GE--RLDAD-AVVSNADLHHTYRRLLP 283 (502)
T ss_pred HHCCCEEEECCeEEEEEee-CCEEEEEEECC--CC--EEECC-EEEECCcHHHHHHHhcC
Confidence 4668999999999999987 67788887653 54 46785 69999998888777653
No 27
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=95.40 E-value=0.031 Score=58.67 Aligned_cols=58 Identities=24% Similarity=0.311 Sum_probs=45.9
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL 227 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl 227 (522)
...+++|+.++.|++|+.+++++++||++.+.+++...+.+ +.||||+|++..-.-|+
T Consensus 141 ~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a-~~VVlAtGg~~~n~~m~ 198 (439)
T TIGR01813 141 KKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAA-KAVVLATGGFGSNKEMI 198 (439)
T ss_pred HHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEec-ceEEEecCCCCCCHHHH
Confidence 46789999999999999874578999998874566567788 58999999887643333
No 28
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=95.36 E-value=0.033 Score=60.38 Aligned_cols=52 Identities=19% Similarity=0.272 Sum_probs=45.5
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~T 222 (522)
.+.+++|+.++.|++|+.+ +++|.||.+.+. +|+...+.| |.||||+|.++.
T Consensus 130 ~~~gi~i~~~~~~~~Li~~-~g~v~Ga~~~~~~~g~~~~i~A-kaVILATGG~~~ 182 (565)
T TIGR01816 130 LKADTSFFNEYFALDLLME-DGECRGVIAYCLETGEIHRFRA-KAVVLATGGYGR 182 (565)
T ss_pred HhCCCEEEeccEEEEEEee-CCEEEEEEEEEcCCCcEEEEEe-CeEEECCCCccc
Confidence 4678999999999999987 689999998754 788889999 589999999875
No 29
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.22 E-value=0.044 Score=59.69 Aligned_cols=53 Identities=15% Similarity=0.278 Sum_probs=45.5
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~T 222 (522)
...+++++.++.|++|+.+++++|.||.+.+. +|+.+.+.| |.||||+|.++.
T Consensus 154 ~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 207 (588)
T PRK08958 154 LKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKA-RATVLATGGAGR 207 (588)
T ss_pred hhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEc-CeEEECCCCccc
Confidence 46789999999999999864679999998754 788889999 589999999875
No 30
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=95.12 E-value=0.053 Score=59.02 Aligned_cols=58 Identities=16% Similarity=0.316 Sum_probs=47.4
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLL 228 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~ 228 (522)
.+.+++|+.++.|++|+.+ +++|+||.+.+ .+...++.++|.||||+|.+..-.-|+.
T Consensus 225 ~~~Gv~i~~~~~v~~l~~~-~g~V~GV~~~~-~~~~~~i~a~k~VVlAtGg~~~n~~~~~ 282 (574)
T PRK12842 225 LDLGIPILTGTPARELLTE-GGRVVGARVID-AGGERRITARRGVVLACGGFSHDLARIA 282 (574)
T ss_pred HhCCCEEEeCCEEEEEEee-CCEEEEEEEEc-CCceEEEEeCCEEEEcCCCccchHHHHH
Confidence 5778999999999999987 78999999887 4455678887689999999885555544
No 31
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.11 E-value=0.044 Score=59.87 Aligned_cols=53 Identities=25% Similarity=0.292 Sum_probs=45.2
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~T 222 (522)
.+.+++++.++.|++|+.+++++|+||.+.+. +|+.+.+.| |.||||+|.++.
T Consensus 160 ~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 213 (598)
T PRK09078 160 LKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRA-HMVVLATGGYGR 213 (598)
T ss_pred hhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEc-CEEEECCCCCcc
Confidence 46789999999999999874479999998653 788889999 579999999885
No 32
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.99 E-value=0.042 Score=60.42 Aligned_cols=52 Identities=25% Similarity=0.379 Sum_probs=45.4
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~T 222 (522)
...|++|+.++.|++|+.+ +++|+||.+.+. +|..+.+.| |.||||+|.++.
T Consensus 181 ~~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~~~g~~~~i~A-kaVVLATGG~g~ 233 (640)
T PRK07573 181 AAGTVKMYTRTEMLDLVVV-DGRARGIVARNLVTGEIERHTA-DAVVLATGGYGN 233 (640)
T ss_pred HhcCCEEEeceEEEEEEEe-CCEEEEEEEEECCCCcEEEEEC-CEEEECCCCccc
Confidence 4678999999999999987 679999999874 677788999 589999999886
No 33
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=94.88 E-value=0.055 Score=59.28 Aligned_cols=53 Identities=13% Similarity=0.225 Sum_probs=45.1
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~T 222 (522)
.+.+++|+.++.|++|+.+++++|.||.+.+. +|+.+.+.| |.||||+|.++.
T Consensus 177 ~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 230 (617)
T PTZ00139 177 LKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRA-HYTVIATGGYGR 230 (617)
T ss_pred HhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEEC-CcEEEeCCCCcc
Confidence 46789999999999999843679999998764 788889999 589999999875
No 34
>KOG2404|consensus
Probab=94.64 E-value=0.034 Score=53.96 Aligned_cols=49 Identities=29% Similarity=0.559 Sum_probs=43.1
Q ss_pred CeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhh
Q psy14407 172 NLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 172 n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~T 222 (522)
-+.|+.+++|++|+.+ .++|.||+|.|.+|+...+.++ .||||.|.++-
T Consensus 159 ~~ki~~nskvv~il~n-~gkVsgVeymd~sgek~~~~~~-~VVlatGGf~y 207 (477)
T KOG2404|consen 159 LVKILLNSKVVDILRN-NGKVSGVEYMDASGEKSKIIGD-AVVLATGGFGY 207 (477)
T ss_pred HHhhhhcceeeeeecC-CCeEEEEEEEcCCCCccceecC-ceEEecCCcCc
Confidence 3689999999999976 8899999999988888778884 69999999874
No 35
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=94.63 E-value=0.11 Score=53.72 Aligned_cols=54 Identities=31% Similarity=0.472 Sum_probs=44.3
Q ss_pred ccCCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchh
Q psy14407 166 IAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIA 221 (522)
Q Consensus 166 ~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~ 221 (522)
+. +++|++|+.++.|.+|..+++..+.||.+.+.+++..+++| +.||||+|.++
T Consensus 143 v~-~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a-~~vVLATGG~g 196 (518)
T COG0029 143 VR-NRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRA-KAVVLATGGLG 196 (518)
T ss_pred Hh-cCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEec-CeEEEecCCCc
Confidence 44 77999999999999999983435669999874446789999 58999999875
No 36
>PLN02815 L-aspartate oxidase
Probab=94.61 E-value=0.061 Score=58.54 Aligned_cols=53 Identities=21% Similarity=0.434 Sum_probs=44.1
Q ss_pred CCCCeEEEcCcEEEEEEec-CCC--eEEEEEEEec-CCeEEEEEeCcEEEEcCcchhh
Q psy14407 169 KRTNLYVLKRSKVTKVIIN-DQN--VATGVEYVNS-KGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~-~~~--~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~T 222 (522)
+.+|++|+.++.|++|+.+ +++ +|+||.+.+. +|+.+.+.| |.||||+|.++-
T Consensus 167 ~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~ 223 (594)
T PLN02815 167 NDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFIS-KVTLLASGGAGH 223 (594)
T ss_pred hcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEe-ceEEEcCCccee
Confidence 4579999999999999986 344 4899998764 688889999 689999999874
No 37
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.60 E-value=0.16 Score=55.39 Aligned_cols=52 Identities=25% Similarity=0.378 Sum_probs=43.8
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~T 222 (522)
.+.|++|+.++.|++|+.+ ++++.||.+.+. +|+.+.+.| |.||||+|+++.
T Consensus 146 ~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVVlATGG~~~ 198 (575)
T PRK05945 146 RRYGVTIYDEWYVMRLILE-DNQAKGVVMYHIADGRLEVVRA-KAVMFATGGYGR 198 (575)
T ss_pred hhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCeEEEEEC-CEEEECCCCCcC
Confidence 4678999999999999887 678999987653 677778999 589999999875
No 38
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=94.59 E-value=0.064 Score=58.91 Aligned_cols=53 Identities=21% Similarity=0.296 Sum_probs=45.3
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~T 222 (522)
.+.+++|+.++.|++|+.++++++.||.+.+. +|+.+.+.| |.||||+|.++.
T Consensus 198 ~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~ 251 (635)
T PLN00128 198 MKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRA-HSTILATGGYGR 251 (635)
T ss_pred HhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEc-CeEEECCCCCcc
Confidence 35689999999999998864578999998764 788889999 589999999875
No 39
>PRK08275 putative oxidoreductase; Provisional
Probab=94.50 E-value=0.073 Score=57.67 Aligned_cols=59 Identities=25% Similarity=0.352 Sum_probs=46.2
Q ss_pred hcccccCCCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhh
Q psy14407 162 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 162 ~l~~~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~T 222 (522)
.|...+ .+.+++|+.++.|++|+.++++++.||.+.+. +|+...+.| |.||||+|+++.
T Consensus 142 ~L~~~~-~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~A-k~VIlATGG~~~ 201 (554)
T PRK08275 142 VLYRQL-KRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRA-KAVILCCGAAGR 201 (554)
T ss_pred HHHHHH-HHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEEC-CEEEECCCCccc
Confidence 343433 46789999999999998863568999988754 677778999 579999998753
No 40
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=94.47 E-value=0.11 Score=55.78 Aligned_cols=60 Identities=27% Similarity=0.362 Sum_probs=49.4
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhhhHHHHHhCC
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGI 231 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~Tp~LLl~SGi 231 (522)
...+++|+.+++|++|..+ ++++.+|++.+. +|+..+++| +.||+|||+ .+..|+...|+
T Consensus 139 ~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~~~~~g~~~~i~a-~~VVnAaG~-wa~~l~~~~g~ 199 (516)
T TIGR03377 139 QEHGARIFTYTKVTGLIRE-GGRVTGVKVEDHKTGEEERIEA-QVVINAAGI-WAGRIAEYAGL 199 (516)
T ss_pred HHcCCEEEcCcEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEc-CEEEECCCc-chHHHHHhcCC
Confidence 4678999999999999887 778999998764 677788999 579999996 67788766554
No 41
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.42 E-value=0.1 Score=57.37 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=42.4
Q ss_pred CeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhhh
Q psy14407 172 NLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANA 223 (522)
Q Consensus 172 n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~Tp 223 (522)
|++|+.++.|++|+.+ ++++.||.+.+. +|+.+.+.| |.||||+|.++..
T Consensus 165 ~v~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~A-k~VVlATGG~~~~ 215 (626)
T PRK07803 165 RIKVFAECTITELLKD-GGRIAGAFGYWRESGRFVLFEA-PAVVLATGGIGKS 215 (626)
T ss_pred ceEEEeCCEEEEEEEE-CCEEEEEEEEECCCCeEEEEEc-CeEEECCCcccCC
Confidence 4999999999999887 678999988654 677788999 5899999987643
No 42
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=94.25 E-value=0.079 Score=58.48 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=45.5
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~T 222 (522)
.+.+++|+.++.|++|+.+ ++++.||.+.+. +|+.+.+.| |.||||+|.++.
T Consensus 169 ~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~G~~~~i~A-kaVVLATGG~g~ 221 (657)
T PRK08626 169 IKLGVPVHDRKEAIALIHD-GKRCYGAVVRCLITGELRAYVA-KATLIATGGYGR 221 (657)
T ss_pred HhCCCEEEeeEEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEc-CeEEECCCcccC
Confidence 4678999999999999987 789999999864 788888999 589999998874
No 43
>PRK07395 L-aspartate oxidase; Provisional
Probab=94.23 E-value=0.062 Score=58.06 Aligned_cols=52 Identities=17% Similarity=0.374 Sum_probs=44.0
Q ss_pred CCCCeEEEcCcEEEEEEec-CCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhh
Q psy14407 169 KRTNLYVLKRSKVTKVIIN-DQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~-~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~T 222 (522)
+++|++|+.++.|++|+.+ ++++|+||.+.+ +|..+.+.| |.||||+|.++.
T Consensus 146 ~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~-~g~~~~i~A-kaVILATGG~~~ 198 (553)
T PRK07395 146 QRPNIEIISQALALSLWLEPETGRCQGISLLY-QGQITWLRA-GAVILATGGGGQ 198 (553)
T ss_pred hcCCcEEEECcChhhheecCCCCEEEEEEEEE-CCeEEEEEc-CEEEEcCCCCcc
Confidence 4569999999999999887 347999998876 787788999 589999999754
No 44
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=94.19 E-value=0.1 Score=55.93 Aligned_cols=57 Identities=21% Similarity=0.341 Sum_probs=45.7
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL 227 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl 227 (522)
...+++|++++.|++|..+ +++|+||++...+++..+++| +.||||+|.+....=|+
T Consensus 201 ~~~gv~i~~~t~v~~l~~~-~g~V~Gv~~~~~~g~~~~i~a-~~VVlAtGG~~~n~~m~ 257 (506)
T PRK06481 201 QERKIPLFVNADVTKITEK-DGKVTGVKVKINGKETKTISS-KAVVVTTGGFGANKDMI 257 (506)
T ss_pred HHcCCeEEeCCeeEEEEec-CCEEEEEEEEeCCCeEEEEec-CeEEEeCCCcccCHHHH
Confidence 4678999999999999876 678999998764556778999 58999999887654333
No 45
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=94.03 E-value=0.13 Score=54.99 Aligned_cols=54 Identities=24% Similarity=0.347 Sum_probs=44.0
Q ss_pred CCCCeEEEcCcEEEEEEec-CC--CeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhh
Q psy14407 169 KRTNLYVLKRSKVTKVIIN-DQ--NVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~-~~--~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~T 222 (522)
+..+++++++++|++|.++ ++ ++|+||++... .+++..+.+++.|||+.|++..
T Consensus 237 e~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ 294 (576)
T PRK13977 237 EDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITE 294 (576)
T ss_pred HhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcc
Confidence 6789999999999999996 34 78999999862 2345667777899999998854
No 46
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=93.99 E-value=0.082 Score=53.28 Aligned_cols=54 Identities=33% Similarity=0.492 Sum_probs=40.9
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHHhC
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSG 230 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~SG 230 (522)
.+.+++|+.+++|++|..+ ++++++|+..+ | +++| +.||+|+|+ .|++|+..+|
T Consensus 158 ~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~--g---~i~a-d~vV~a~G~-~s~~l~~~~~ 211 (358)
T PF01266_consen 158 QRAGVEIRTGTEVTSIDVD-GGRVTGVRTSD--G---EIRA-DRVVLAAGA-WSPQLLPLLG 211 (358)
T ss_dssp HHTT-EEEESEEEEEEEEE-TTEEEEEEETT--E---EEEE-CEEEE--GG-GHHHHHHTTT
T ss_pred HHhhhhccccccccchhhc-ccccccccccc--c---cccc-ceeEecccc-cceeeeeccc
Confidence 3568999999999999998 77888887654 4 3888 479999996 7888777654
No 47
>PRK09077 L-aspartate oxidase; Provisional
Probab=93.97 E-value=0.11 Score=55.98 Aligned_cols=53 Identities=26% Similarity=0.390 Sum_probs=44.7
Q ss_pred CCCCeEEEcCcEEEEEEecC-----CCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhh
Q psy14407 169 KRTNLYVLKRSKVTKVIIND-----QNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~-----~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~T 222 (522)
+.+|++|+.++.|++|+.++ +++++||.+.+. +|+...+.| |.||||+|.++.
T Consensus 150 ~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~A-k~VVlATGG~~~ 208 (536)
T PRK09077 150 NHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRA-KFVVLATGGASK 208 (536)
T ss_pred hCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEec-CeEEECCCCCCC
Confidence 56799999999999998752 379999998864 677888999 589999999874
No 48
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=93.84 E-value=0.15 Score=55.50 Aligned_cols=52 Identities=17% Similarity=0.367 Sum_probs=44.2
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~T 222 (522)
+.+|++++.++.|++|+.+ ++++.||.+.+. +|+.+.+.| |.||||+|.+..
T Consensus 145 ~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVIlATGG~~~ 197 (582)
T PRK09231 145 KYPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRA-NAVVMATGGAGR 197 (582)
T ss_pred cCCCcEEEeCeEEEEEEEe-CCEEEEEEEEEcCCCcEEEEEC-CEEEECCCCCcC
Confidence 4468999999999999987 688999988653 677788999 589999999774
No 49
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.79 E-value=0.15 Score=55.57 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=43.0
Q ss_pred CCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhh
Q psy14407 171 TNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 171 ~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~T 222 (522)
.+++++.++.|++|+.+++++|.||.+.+. +|+.+.+.| |.||||+|.++.
T Consensus 150 ~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 201 (589)
T PRK08641 150 GLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPA-DAVIMATGGPGI 201 (589)
T ss_pred CCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEEC-CEEEECCCCCcC
Confidence 358999999999999864679999999875 566678899 589999999885
No 50
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=93.73 E-value=0.22 Score=53.84 Aligned_cols=59 Identities=24% Similarity=0.287 Sum_probs=48.1
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhhhHHHHHhC
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSG 230 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~Tp~LLl~SG 230 (522)
...+++++.+++|+.|..+ ++++++|++.+. +|+..+|+|+ .||+|||+ .+..|+...|
T Consensus 160 ~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~~~g~~~~i~A~-~VVnAaG~-wa~~l~~~~g 219 (546)
T PRK11101 160 KEHGAQILTYHEVTGLIRE-GDTVCGVRVRDHLTGETQEIHAP-VVVNAAGI-WGQHIAEYAD 219 (546)
T ss_pred HhCCCEEEeccEEEEEEEc-CCeEEEEEEEEcCCCcEEEEECC-EEEECCCh-hHHHHHHhcC
Confidence 4678999999999999887 778999998774 5667789994 79999996 5777765544
No 51
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=93.72 E-value=0.17 Score=54.88 Aligned_cols=56 Identities=23% Similarity=0.312 Sum_probs=43.2
Q ss_pred CCCeEEEcCcEEEEEEecCCCeEEEEEEEec-C-------------CeEEEEEeCcEEEEcCcchhh-hHHHH
Q psy14407 170 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-K-------------GETVRVTANKEVILTAGAIAN-AQLLL 227 (522)
Q Consensus 170 ~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~-------------g~~~~v~A~k~VILaaGai~T-p~LLl 227 (522)
..++++++++.|++|+.+ +++|+||++.+. + +..+++.| |.||||+|.++. +.++.
T Consensus 164 ~~gv~i~~~t~~~~Li~~-~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~A-kaVILATGGf~~n~em~~ 234 (549)
T PRK12834 164 RGLVRFRFRHRVDELVVT-DGAVTGVRGTVLEPSDAERGEASSREVVGEFELRA-QAVIVTSGGIGGNHELVR 234 (549)
T ss_pred hCCceEEecCEeeEEEEe-CCEEEEEEEEecccccccccccccccccceEEEec-CEEEEeCCCcccCHHHHH
Confidence 457999999999999987 789999997421 1 23578889 579999999985 44444
No 52
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=93.72 E-value=0.2 Score=55.10 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=48.5
Q ss_pred CCCCeEEEcCcEEEEEEecC-CCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhhhHHHHHhC
Q psy14407 169 KRTNLYVLKRSKVTKVIIND-QNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSG 230 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~-~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~Tp~LLl~SG 230 (522)
...+++++.+++|++|..++ ++++++|++.+. +|+.+++++ +.||+|||+ .+..|+...|
T Consensus 243 ~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a-~~VVnAaGa-ws~~l~~~~g 304 (627)
T PLN02464 243 ALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYA-KVVVNAAGP-FCDEVRKMAD 304 (627)
T ss_pred HhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEe-CEEEECCCH-hHHHHHHhcc
Confidence 46789999999999998863 468999998874 677778999 579999997 5777776554
No 53
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=93.63 E-value=0.13 Score=55.99 Aligned_cols=52 Identities=21% Similarity=0.266 Sum_probs=44.1
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~T 222 (522)
.+.+++++.++.|++|+.+ +++++||.+.+. +|+...+.| |.||||+|.+..
T Consensus 140 ~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGG~~~ 192 (566)
T TIGR01812 140 LKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRA-KAVVLATGGYGR 192 (566)
T ss_pred HHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEEC-CeEEECCCcccC
Confidence 3558999999999999987 689999998764 677788999 589999999864
No 54
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.60 E-value=0.18 Score=55.11 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=44.5
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~T 222 (522)
...+++++.++.|++|+.++++++.||.+.+. +|+...+.| |.||||+|.+..
T Consensus 159 ~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 212 (591)
T PRK07057 159 VAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEA-KTTLFATGGAGR 212 (591)
T ss_pred HhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEEC-CeEEECCCCccc
Confidence 35789999999999999864578999998764 677788899 589999999875
No 55
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=93.59 E-value=0.16 Score=55.19 Aligned_cols=52 Identities=17% Similarity=0.320 Sum_probs=44.6
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~T 222 (522)
+.++++++.++.|++|+.+ +++|.||.+.+. +|+...+.| |.||||+|.+..
T Consensus 144 ~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 196 (580)
T TIGR01176 144 TYPQIMRYDEWFVTDLLVD-DGRVCGLVAIEMAEGRLVTILA-DAVVLATGGAGR 196 (580)
T ss_pred hcCCCEEEeCeEEEEEEee-CCEEEEEEEEEcCCCcEEEEec-CEEEEcCCCCcc
Confidence 4578999999999999987 679999998764 777788999 589999999774
No 56
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=93.59 E-value=0.16 Score=60.01 Aligned_cols=54 Identities=24% Similarity=0.444 Sum_probs=45.6
Q ss_pred CCCeEEEcCcEEEEEEecC-----C---CeEEEEEEEec---CCeEEEEEeCcEEEEcCcchhhhH
Q psy14407 170 RTNLYVLKRSKVTKVIIND-----Q---NVATGVEYVNS---KGETVRVTANKEVILTAGAIANAQ 224 (522)
Q Consensus 170 ~~n~~v~~~~~V~~I~~~~-----~---~~a~gV~~~~~---~g~~~~v~A~k~VILaaGai~Tp~ 224 (522)
+.+++|+.++.|++|+.++ | ++|+||++.+. +|+.+.+.| |.||||+|.++.-.
T Consensus 559 ~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~A-kaVILATGGf~~N~ 623 (1167)
T PTZ00306 559 SGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLA-DAVILATGGFSNDH 623 (1167)
T ss_pred cCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEe-ceEEEecCCcccCc
Confidence 3689999999999999862 2 38999999875 688889999 68999999998753
No 57
>PRK07512 L-aspartate oxidase; Provisional
Probab=93.40 E-value=0.11 Score=55.69 Aligned_cols=51 Identities=22% Similarity=0.452 Sum_probs=42.6
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~T 222 (522)
+.++++++.++.|++|..+ +++++||.+.+ ++..+.+.| +.||||+|.++.
T Consensus 148 ~~~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~-~~~~~~i~A-k~VVLATGG~~~ 198 (513)
T PRK07512 148 ATPSITVLEGAEARRLLVD-DGAVAGVLAAT-AGGPVVLPA-RAVVLATGGIGG 198 (513)
T ss_pred hCCCCEEEECcChhheeec-CCEEEEEEEEe-CCeEEEEEC-CEEEEcCCCCcC
Confidence 3468999999999999876 67899999886 555668999 579999999864
No 58
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.29 E-value=0.18 Score=55.03 Aligned_cols=53 Identities=21% Similarity=0.302 Sum_probs=44.1
Q ss_pred CCCCeEEEcCcEEEEEEecCC---CeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQ---NVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~---~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~T 222 (522)
...+++++.++.|++|+.+++ +++.||.+.+. +|+.+.+.| |.||||+|.++.
T Consensus 151 ~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 207 (583)
T PRK08205 151 VKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHA-KAVVFATGGSGR 207 (583)
T ss_pred HhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEe-CeEEECCCCCcc
Confidence 467899999999999988732 78999998653 677778999 589999999874
No 59
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=93.27 E-value=0.23 Score=51.32 Aligned_cols=65 Identities=22% Similarity=0.213 Sum_probs=47.5
Q ss_pred hhcccccCCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHHhCCCC
Q psy14407 161 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP 233 (522)
Q Consensus 161 ~~l~~~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~SGig~ 233 (522)
+|+..+. ..|++|..+++|++|..++++ ++-+... +|++. ++| |-||.||| ..+-+|++.+|+.+
T Consensus 158 ~l~e~a~--~~g~~i~ln~eV~~i~~~~dg-~~~~~~~--~g~~~-~~a-k~Vin~AG-l~Ad~la~~~g~~~ 222 (429)
T COG0579 158 ALAEEAQ--ANGVELRLNTEVTGIEKQSDG-VFVLNTS--NGEET-LEA-KFVINAAG-LYADPLAQMAGIPE 222 (429)
T ss_pred HHHHHHH--HcCCEEEecCeeeEEEEeCCc-eEEEEec--CCcEE-EEe-eEEEECCc-hhHHHHHHHhCCCc
Confidence 4554444 559999999999999997333 2222222 56666 999 57999999 58899999999865
No 60
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.14 E-value=0.16 Score=53.71 Aligned_cols=74 Identities=24% Similarity=0.320 Sum_probs=57.6
Q ss_pred CCeecchhhhhcccccCCCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhhhHHHHHhC
Q psy14407 152 YGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSG 230 (522)
Q Consensus 152 ~g~R~s~~~~~l~~~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~Tp~LLl~SG 230 (522)
+.+|....+. ..+ ...+.++++.++|+++..+ ++ +.||++.|. +|++++++| +.||-|||. .+-.|+...+
T Consensus 162 ddaRLv~~~a--~~A--~~~Ga~il~~~~v~~~~re-~~-v~gV~~~D~~tg~~~~ira-~~VVNAaGp-W~d~i~~~~~ 233 (532)
T COG0578 162 DDARLVAANA--RDA--AEHGAEILTYTRVESLRRE-GG-VWGVEVEDRETGETYEIRA-RAVVNAAGP-WVDEILEMAG 233 (532)
T ss_pred chHHHHHHHH--HHH--Hhcccchhhcceeeeeeec-CC-EEEEEEEecCCCcEEEEEc-CEEEECCCc-cHHHHHHhhc
Confidence 4456554422 123 4788999999999999998 66 999999987 799999999 579999996 6778888776
Q ss_pred CCC
Q psy14407 231 IGP 233 (522)
Q Consensus 231 ig~ 233 (522)
..+
T Consensus 234 ~~~ 236 (532)
T COG0578 234 LEQ 236 (532)
T ss_pred ccC
Confidence 544
No 61
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.07 E-value=0.21 Score=54.40 Aligned_cols=52 Identities=25% Similarity=0.353 Sum_probs=43.7
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~T 222 (522)
+..+++++.++.|++|+.+ ++++.||.+.+. +|+.+.+.| |.||||+|++..
T Consensus 149 ~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~A-k~VIlATGG~~~ 201 (577)
T PRK06069 149 RFDNIHFYDEHFVTSLIVE-NGVFKGVTAIDLKRGEFKVFQA-KAGIIATGGAGR 201 (577)
T ss_pred hcCCCEEEECCEEEEEEEE-CCEEEEEEEEEcCCCeEEEEEC-CcEEEcCchhcc
Confidence 4478999999999999887 678999998764 677778999 579999999863
No 62
>PRK08071 L-aspartate oxidase; Provisional
Probab=92.95 E-value=0.17 Score=54.14 Aligned_cols=50 Identities=26% Similarity=0.374 Sum_probs=43.3
Q ss_pred CCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhh
Q psy14407 171 TNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 171 ~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~T 222 (522)
.+++|+.++.|++|+.+ ++++.||.+.+.+|+.+.++| |.||||+|++..
T Consensus 142 ~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~g~~~~i~A-k~VVlATGG~~~ 191 (510)
T PRK08071 142 PHVTVVEQEMVIDLIIE-NGRCIGVLTKDSEGKLKRYYA-DYVVLASGGCGG 191 (510)
T ss_pred cCCEEEECeEhhheeec-CCEEEEEEEEECCCcEEEEEc-CeEEEecCCCcc
Confidence 68999999999999877 678999998775677788999 589999999875
No 63
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=92.95 E-value=0.24 Score=54.23 Aligned_cols=51 Identities=25% Similarity=0.306 Sum_probs=42.2
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA 221 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~ 221 (522)
+..+++++.++.|++|+.+ ++++.||.+.+. +|+.+.+.| |.||||+|++.
T Consensus 144 ~~ggV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~ 195 (608)
T PRK06854 144 KALGDNVLNRVFITDLLVD-DNRIAGAVGFSVRENKFYVFKA-KAVIVATGGAA 195 (608)
T ss_pred hcCCCEEEeCCEEEEEEEe-CCEEEEEEEEEccCCcEEEEEC-CEEEECCCchh
Confidence 3456999999999999887 678999987543 567778999 58999999876
No 64
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=92.70 E-value=0.24 Score=52.74 Aligned_cols=50 Identities=18% Similarity=0.317 Sum_probs=42.4
Q ss_pred CCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhh
Q psy14407 170 RTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 170 ~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~T 222 (522)
.+|++|+.++.|++|+.+ ++++.||.+.+ .+....++| +.||||+|++..
T Consensus 141 ~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~-~~~~~~i~A-~~VVlAtGG~~~ 190 (488)
T TIGR00551 141 HPNIRIIEGENALDLLIE-TGRVVGVWVWN-RETVETCHA-DAVVLATGGAGK 190 (488)
T ss_pred cCCcEEEECeEeeeeecc-CCEEEEEEEEE-CCcEEEEEc-CEEEECCCcccC
Confidence 479999999999999887 67899998887 455667899 589999999875
No 65
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=92.22 E-value=0.34 Score=52.90 Aligned_cols=51 Identities=24% Similarity=0.276 Sum_probs=42.5
Q ss_pred CCCeEEEcCcEEEEEEecC--CCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchh
Q psy14407 170 RTNLYVLKRSKVTKVIIND--QNVATGVEYVNS-KGETVRVTANKEVILTAGAIA 221 (522)
Q Consensus 170 ~~n~~v~~~~~V~~I~~~~--~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~ 221 (522)
..+.+|+.++.|++|+.++ +++|.||.+.+. +|+.+.+.| |.||||+|.+.
T Consensus 138 ~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~ 191 (614)
T TIGR02061 138 NALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKA-KTVIVAAGGAV 191 (614)
T ss_pred hCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEEC-CEEEECCCccc
Confidence 3457999999999999872 279999998764 777888999 58999999986
No 66
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=92.15 E-value=0.6 Score=49.60 Aligned_cols=68 Identities=22% Similarity=0.179 Sum_probs=46.5
Q ss_pred hhcccccCCCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhhhHHHHHhCCC
Q psy14407 161 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIG 232 (522)
Q Consensus 161 ~~l~~~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~Tp~LLl~SGig 232 (522)
.++..+. ...+++++.+++|+.|..++++.. .|++.+. +|+..+++|+ .||+|||+ .+-+|+..+|+.
T Consensus 189 aL~~~l~-~~~Gv~i~~~~~V~~I~~~~d~~w-~v~v~~t~~g~~~~i~Ad-~VV~AAGa-wS~~La~~~Gi~ 257 (497)
T PRK13339 189 KLAKHLE-SHPNAQVKYNHEVVDLERLSDGGW-EVTVKDRNTGEKREQVAD-YVFIGAGG-GAIPLLQKSGIP 257 (497)
T ss_pred HHHHHHH-hCCCcEEEeCCEEEEEEECCCCCE-EEEEEecCCCceEEEEcC-EEEECCCc-chHHHHHHcCCC
Confidence 4443333 456899999999999987622222 2443322 4544468995 79999997 888999999874
No 67
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=91.86 E-value=0.51 Score=50.13 Aligned_cols=61 Identities=20% Similarity=0.171 Sum_probs=44.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhhhHHHHHhCCC
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIG 232 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~Tp~LLl~SGig 232 (522)
...+++|+.+++|++|..++++.+ .|.+.+. +|+..+++|+ .||+|||+ .+.+|+...|+.
T Consensus 189 ~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~-~VV~AAG~-~s~~La~~~Gi~ 250 (483)
T TIGR01320 189 VQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTR-FVFVGAGG-GALPLLQKSGIP 250 (483)
T ss_pred HhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECC-EEEECCCc-chHHHHHHcCCC
Confidence 356899999999999987623322 3443332 4555678994 79999997 678888888874
No 68
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=91.67 E-value=0.097 Score=48.34 Aligned_cols=62 Identities=21% Similarity=0.252 Sum_probs=38.6
Q ss_pred hhhcccccCCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHHh
Q psy14407 160 DAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLS 229 (522)
Q Consensus 160 ~~~l~~~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~S 229 (522)
..||...+ ++.+++++.+++|++|..+ +++ ..|++.+ + .+++| +.||||.|....|+++-.-
T Consensus 85 ~~yl~~~~-~~~~l~i~~~~~V~~v~~~-~~~-w~v~~~~--~--~~~~a-~~VVlAtG~~~~p~~p~~~ 146 (203)
T PF13738_consen 85 LDYLQEYA-ERFGLEIRFNTRVESVRRD-GDG-WTVTTRD--G--RTIRA-DRVVLATGHYSHPRIPDIP 146 (203)
T ss_dssp HHHHHHHH-HHTTGGEETS--EEEEEEE-TTT-EEEEETT--S---EEEE-EEEEE---SSCSB---S-T
T ss_pred HHHHHHHH-hhcCcccccCCEEEEEEEe-ccE-EEEEEEe--c--ceeee-eeEEEeeeccCCCCccccc
Confidence 35777666 6778899999999999998 433 4455543 5 56779 5799999999999988543
No 69
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=91.52 E-value=0.59 Score=49.79 Aligned_cols=61 Identities=30% Similarity=0.300 Sum_probs=43.5
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEe-cCCeEEEEEeCcEEEEcCcchhhhHHHHHhCCC
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVN-SKGETVRVTANKEVILTAGAIANAQLLLLSGIG 232 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaaGai~Tp~LLl~SGig 232 (522)
+.++++|+.+++|++|..++++++ .|.+.+ .+|+..+++|+ .||+|||+ .+.+|+..+|+.
T Consensus 195 ~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~-~VVvaAGg-~s~~L~~~~Gi~ 256 (494)
T PRK05257 195 KQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAK-FVFIGAGG-GALPLLQKSGIP 256 (494)
T ss_pred hCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcC-EEEECCCc-chHHHHHHcCCC
Confidence 344699999999999988623333 344432 14554568994 79999997 678888888874
No 70
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=91.51 E-value=0.39 Score=50.29 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=43.5
Q ss_pred CCCCeEEEcCcEEEEEEec-CCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIIN-DQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLL 228 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~-~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~ 228 (522)
++.+++|+.+++|++|+.+ +++++++|...+ ++ .++.| |.||||+|.++..+=|+.
T Consensus 134 ~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~-~~--~~i~a-k~VIlAtGG~~~n~~~~~ 190 (432)
T TIGR02485 134 ERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTV-GT--HRITT-QALVLAAGGLGANRDWLR 190 (432)
T ss_pred HHcCCEEEeCCEEEEEEecCCCCeEEEEEEcC-Cc--EEEEc-CEEEEcCCCcccCHHHHH
Confidence 5678999999999999876 357888887643 22 57888 579999999887665554
No 71
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=91.48 E-value=0.42 Score=54.97 Aligned_cols=51 Identities=31% Similarity=0.429 Sum_probs=43.6
Q ss_pred CCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhh
Q psy14407 170 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 170 ~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~T 222 (522)
..++.+.+++.+++|+.+ ++++.||.+.+. +|+.+.+.| |.||||+|.++.
T Consensus 155 ~~~i~~~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~ 206 (897)
T PRK13800 155 RERIRIENRLMPVRVLTE-GGRAVGAAALNTRTGEFVTVGA-KAVILATGPCGR 206 (897)
T ss_pred cCCcEEEeceeeEEEEee-CCEEEEEEEEecCCCcEEEEEC-CEEEECCCcccc
Confidence 358999999999999887 679999998764 788889999 689999999873
No 72
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=91.08 E-value=0.61 Score=49.61 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=41.1
Q ss_pred CeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHHhCCC
Q psy14407 172 NLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 232 (522)
Q Consensus 172 n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~SGig 232 (522)
+++|+.+++|+.|..+ ++....|+.. +| +++|+ .||+|||+ .|.+|+..+|++
T Consensus 231 ~v~i~~~t~V~~I~~~-~~~~~~V~T~--~G---~i~A~-~VVvaAG~-~S~~La~~~Gi~ 283 (497)
T PTZ00383 231 KISINLNTEVLNIERS-NDSLYKIHTN--RG---EIRAR-FVVVSACG-YSLLFAQKMGYG 283 (497)
T ss_pred CEEEEeCCEEEEEEec-CCCeEEEEEC--CC---EEEeC-EEEECcCh-hHHHHHHHhCCC
Confidence 3899999999999886 4445555432 34 58995 79999997 688999999875
No 73
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=90.97 E-value=0.39 Score=49.57 Aligned_cols=56 Identities=14% Similarity=0.210 Sum_probs=45.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLL 228 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~ 228 (522)
.+.+.+++.+++|+++.++ ++++++|... ++...+++|+ .||||+|+.-|..|+..
T Consensus 274 ~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~--~g~~~~l~AD-~vVLAaGaw~S~gL~a~ 329 (419)
T TIGR03378 274 EQLGGVMLPGDRVLRAEFE-GNRVTRIHTR--NHRDIPLRAD-HFVLASGSFFSNGLVAE 329 (419)
T ss_pred HHCCCEEEECcEEEEEEee-CCeEEEEEec--CCccceEECC-EEEEccCCCcCHHHHhh
Confidence 4668899999999999988 7778887653 3545679996 69999999988888655
No 74
>PRK07804 L-aspartate oxidase; Provisional
Probab=90.82 E-value=0.44 Score=51.50 Aligned_cols=53 Identities=15% Similarity=0.234 Sum_probs=41.6
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec----CCeEEEEEeCcEEEEcCcchhh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS----KGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~----~g~~~~v~A~k~VILaaGai~T 222 (522)
.+.+++|+.++.|++|+.++++++.||.+.+. ++....+.| |.||||+|.+..
T Consensus 155 ~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~A-k~VIlATGG~~~ 211 (541)
T PRK07804 155 RADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHA-PAVVLATGGLGQ 211 (541)
T ss_pred HhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEc-CeEEECCCCCCC
Confidence 45569999999999998874468999988731 233467899 589999999764
No 75
>KOG0042|consensus
Probab=90.26 E-value=0.097 Score=54.36 Aligned_cols=68 Identities=21% Similarity=0.314 Sum_probs=53.8
Q ss_pred cCCeecchhhhhcccccCCCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhhh
Q psy14407 151 RYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANA 223 (522)
Q Consensus 151 ~~g~R~s~~~~~l~~~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~Tp 223 (522)
.+.+|.....+ | .| .+.+++++-+.+|.+|+.++++++.|++++|. +|++++|+| |.||=|+|-+.-.
T Consensus 221 ~nDaRmnl~vA-l-TA--~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~A-k~VVNATGpfsDs 289 (680)
T KOG0042|consen 221 HNDARMNLAVA-L-TA--ARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRA-KVVVNATGPFSDS 289 (680)
T ss_pred CchHHHHHHHH-H-HH--HhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEE-EEEEeCCCCccHH
Confidence 34566654432 1 23 48899999999999999986668999999997 899999999 7899999987543
No 76
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=88.13 E-value=0.84 Score=47.48 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=44.0
Q ss_pred cccccCCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHH
Q psy14407 163 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 226 (522)
Q Consensus 163 l~~~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LL 226 (522)
|...+ .+.+++++++++|+++..+ ++++..|. .. +|+..+++|+ .||||+|.+.+.-|.
T Consensus 265 L~~~l-~~~Gv~I~~g~~V~~v~~~-~~~V~~v~-~~-~g~~~~i~AD-~VVLAtGrf~s~GL~ 323 (422)
T PRK05329 265 LRRAF-ERLGGRIMPGDEVLGAEFE-GGRVTAVW-TR-NHGDIPLRAR-HFVLATGSFFSGGLV 323 (422)
T ss_pred HHHHH-HhCCCEEEeCCEEEEEEEe-CCEEEEEE-ee-CCceEEEECC-EEEEeCCCcccCcee
Confidence 33444 5678999999999999887 55666655 22 5777789995 799999987666553
No 77
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=87.83 E-value=1 Score=46.03 Aligned_cols=48 Identities=29% Similarity=0.529 Sum_probs=37.4
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANA 223 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp 223 (522)
..+|++|+ ..+|+.|..+ +++|.||... +|+ .+++ +.||||+|++.+.
T Consensus 107 ~~~nl~i~-~~~V~~l~~e-~~~v~GV~~~--~g~--~~~a-~~vVlaTGtfl~G 154 (392)
T PF01134_consen 107 SHPNLTII-QGEVTDLIVE-NGKVKGVVTK--DGE--EIEA-DAVVLATGTFLNG 154 (392)
T ss_dssp TSTTEEEE-ES-EEEEEEC-TTEEEEEEET--TSE--EEEE-CEEEE-TTTGBTS
T ss_pred cCCCeEEE-EcccceEEec-CCeEEEEEeC--CCC--EEec-CEEEEecccccCc
Confidence 67999997 6799999998 7899998875 466 6888 5799999995443
No 78
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=87.10 E-value=1.1 Score=45.18 Aligned_cols=63 Identities=24% Similarity=0.278 Sum_probs=41.6
Q ss_pred hhhhcccccCCCCCeEEEcCcEEEEEEec-CC-CeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHH
Q psy14407 159 ADAYLTPIAGKRTNLYVLKRSKVTKVIIN-DQ-NVATGVEYVNSKGETVRVTANKEVILTAGAIANAQL 225 (522)
Q Consensus 159 ~~~~l~~~~~~~~n~~v~~~~~V~~I~~~-~~-~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~L 225 (522)
...|+.+++ ++-.-.+.-+++|++|..+ ++ .....|++.+.+|...++.|+ .|||+.| .+|.|
T Consensus 97 f~dYl~Wva-~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar-~vVla~G--~~P~i 161 (341)
T PF13434_consen 97 FNDYLRWVA-EQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRAR-NVVLATG--GQPRI 161 (341)
T ss_dssp HHHHHHHHH-CCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEES-EEEE------EE--
T ss_pred HHHHHHHHH-HhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeC-eEEECcC--CCCCC
Confidence 447887766 5555458889999999997 22 245677776667888999995 7999999 66664
No 79
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=86.96 E-value=0.19 Score=52.57 Aligned_cols=63 Identities=27% Similarity=0.336 Sum_probs=0.0
Q ss_pred hcccccCCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHHhCC
Q psy14407 162 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 231 (522)
Q Consensus 162 ~l~~~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~SGi 231 (522)
.|...+ ...|++|+.++.|+.+..+ ++++.+|.+.+..| ..+|+| +.||-|.| ...|+-++|+
T Consensus 95 ~l~~~l-~e~gv~v~~~t~v~~v~~~-~~~i~~V~~~~~~g-~~~i~A-~~~IDaTG---~g~l~~~aG~ 157 (428)
T PF12831_consen 95 VLDEML-AEAGVEVLLGTRVVDVIRD-GGRITGVIVETKSG-RKEIRA-KVFIDATG---DGDLAALAGA 157 (428)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cccccc-ccccccccccccccccccc-cccccccccccccc-cccccc-cccccccc---cccccccccc
Confidence 344444 5689999999999999998 88999999987554 889999 58999999 3578888875
No 80
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=85.77 E-value=1.1 Score=47.91 Aligned_cols=53 Identities=26% Similarity=0.406 Sum_probs=42.4
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL 227 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl 227 (522)
++.+.+|+.++.|++|..+ ++++.+|++.+ |+ ++.|+ .||+++|...+-..|+
T Consensus 240 ~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~--g~--~~~ad-~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 240 EKHGGQIRYRARVTKIILE-NGKAVGVKLAD--GE--KIYAK-RIVSNATRWDTFGKLL 292 (493)
T ss_pred HHCCCEEEeCCeeeEEEec-CCcEEEEEeCC--CC--EEEcC-EEEECCChHHHHHHhC
Confidence 5778999999999999987 67888887654 54 46785 6999999877766554
No 81
>PLN02661 Putative thiazole synthesis
Probab=85.06 E-value=1.9 Score=43.53 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=40.5
Q ss_pred cccCCCCCeEEEcCcEEEEEEecCCCeEEEEEEEe------cCC----eEEEEEeCcEEEEcCcch
Q psy14407 165 PIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVN------SKG----ETVRVTANKEVILTAGAI 220 (522)
Q Consensus 165 ~~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~------~~g----~~~~v~A~k~VILaaGai 220 (522)
.+. .++|++++.++.|+.|+.+ ++++.||.+.. ..+ ....++| |.||||+|.-
T Consensus 181 ka~-~~~gVkI~~~t~V~DLI~~-~grVaGVVvnw~~v~~~~~~~s~~dp~~I~A-kaVVlATGh~ 243 (357)
T PLN02661 181 KLL-ARPNVKLFNAVAAEDLIVK-GDRVGGVVTNWALVAQNHDTQSCMDPNVMEA-KVVVSSCGHD 243 (357)
T ss_pred HHH-hcCCCEEEeCeEeeeEEec-CCEEEEEEeecchhhhccCCCCccceeEEEC-CEEEEcCCCC
Confidence 344 5789999999999999998 78899998631 111 2357899 5899999953
No 82
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=84.99 E-value=1.8 Score=41.88 Aligned_cols=50 Identities=20% Similarity=0.314 Sum_probs=38.6
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec----CC---eEEEEEeCcEEEEcCcc
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS----KG---ETVRVTANKEVILTAGA 219 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~----~g---~~~~v~A~k~VILaaGa 219 (522)
...+++++.+++|+.|..++++++.||.+... .| ...+++| |.||+|+|.
T Consensus 115 ~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~A-k~VI~ATG~ 171 (257)
T PRK04176 115 IDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEA-KAVVDATGH 171 (257)
T ss_pred HHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEc-CEEEEEeCC
Confidence 36789999999999998863448999887531 12 3478999 589999995
No 83
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=84.79 E-value=1.8 Score=46.15 Aligned_cols=56 Identities=29% Similarity=0.278 Sum_probs=42.2
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhhhHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLL 226 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~Tp~LL 226 (522)
+..+.+|++++.|++|+.+ ++++++|.+.+. +|+..++.|+ .||+++-.-.+.+||
T Consensus 243 ~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad-~VI~~~~~~~~~~ll 299 (492)
T TIGR02733 243 KRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKAD-DVVANLPPQSLLELL 299 (492)
T ss_pred HhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECC-EEEECCCHHHHHHhc
Confidence 4568899999999999988 667888887652 2333568895 699988886666644
No 84
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=83.95 E-value=2.7 Score=45.04 Aligned_cols=55 Identities=20% Similarity=0.245 Sum_probs=42.6
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhhhHHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLL 227 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~Tp~LLl 227 (522)
...+++++.+++|++|..+ ++. .+|++.+. +|+..+++| +.||+|+|+ .+..|+-
T Consensus 166 ~~~Ga~i~~~~~V~~i~~~-~~~-~~v~~~~~~~g~~~~i~a-~~VVnAaG~-wa~~l~~ 221 (508)
T PRK12266 166 AERGAEILTRTRVVSARRE-NGL-WHVTLEDTATGKRYTVRA-RALVNAAGP-WVKQFLD 221 (508)
T ss_pred HHcCCEEEcCcEEEEEEEe-CCE-EEEEEEEcCCCCEEEEEc-CEEEECCCc-cHHHHHh
Confidence 4678999999999999876 443 56777653 577788999 589999997 4666654
No 85
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=82.53 E-value=1.9 Score=43.14 Aligned_cols=49 Identities=24% Similarity=0.415 Sum_probs=37.5
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQL 225 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~L 225 (522)
...+++++.+++|+.|..+ ++++.+|+.. +| +++|+ .||+|+|+ .|+.|
T Consensus 148 ~~~g~~~~~~~~v~~i~~~-~~~~~~v~~~--~g---~~~a~-~vV~a~G~-~~~~l 196 (337)
T TIGR02352 148 EKLGVEIIEHTEVQHIEIR-GEKVTAIVTP--SG---DVQAD-QVVLAAGA-WAGEL 196 (337)
T ss_pred HHcCCEEEccceEEEEEee-CCEEEEEEcC--CC---EEECC-EEEEcCCh-hhhhc
Confidence 4678999999999999886 6677777632 34 58895 79999997 55554
No 86
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=82.38 E-value=2.4 Score=45.76 Aligned_cols=52 Identities=25% Similarity=0.332 Sum_probs=43.9
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA 221 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~ 221 (522)
+..+++++.+..|++|+.++++.+.||...+. +|+.+.++| |.||||.|+.+
T Consensus 150 ~~~~~~~~~~~~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~a-kavilaTGG~g 202 (562)
T COG1053 150 KFSGIEIFDEYFVLDLLVDDGGGVAGVVARDLRTGELYVFRA-KAVILATGGAG 202 (562)
T ss_pred HhhcchhhhhhhhhhheecCCCcEEEEEEEEecCCcEEEEec-CcEEEccCCce
Confidence 44778999999999999874555899998876 788888999 68999999988
No 87
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=81.82 E-value=3.8 Score=42.37 Aligned_cols=53 Identities=21% Similarity=0.309 Sum_probs=38.2
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLL 228 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~ 228 (522)
...+++++.+++|++|..++++++.+|+.. +| ++.++ .||+|||+- ++.++..
T Consensus 194 ~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~--~g---~i~a~-~vVvaagg~-~~~l~~~ 246 (407)
T TIGR01373 194 DRRGVDIIQNCEVTGFIRRDGGRVIGVETT--RG---FIGAK-KVGVAVAGH-SSVVAAM 246 (407)
T ss_pred HHCCCEEEeCCEEEEEEEcCCCcEEEEEeC--Cc---eEECC-EEEECCChh-hHHHHHH
Confidence 467899999999999976534566666543 34 58885 699999984 5555544
No 88
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=81.50 E-value=3.8 Score=43.13 Aligned_cols=49 Identities=14% Similarity=0.227 Sum_probs=36.8
Q ss_pred CCCeEEEcCcEEEEEEecCCCeEEEEEEEecCC-eEEEEEeCcEEEEcCcc
Q psy14407 170 RTNLYVLKRSKVTKVIINDQNVATGVEYVNSKG-ETVRVTANKEVILTAGA 219 (522)
Q Consensus 170 ~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g-~~~~v~A~k~VILaaGa 219 (522)
..+.+|++++.|++|..++++++++|++.+..| +.+++.++ .||+++..
T Consensus 225 ~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~-~VI~a~p~ 274 (453)
T TIGR02731 225 SRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTAD-AYVSAMPV 274 (453)
T ss_pred hcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECC-EEEEcCCH
Confidence 457899999999999876456788999875223 23468895 69998875
No 89
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=80.82 E-value=3.7 Score=41.69 Aligned_cols=89 Identities=22% Similarity=0.227 Sum_probs=55.6
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCcccceeeecccccCCeecchhhhhcccccCCCCCeEEEcCcEEEEEEecCCCeEEEEE
Q psy14407 117 EIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVE 196 (522)
Q Consensus 117 ~~~~~a~~~~G~~~~~~~n~~~~~~G~~~~~~~~~~g~R~s~~~~~l~~~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~ 196 (522)
..|..-++++|++.... ..|. +++..+ +.++-...|...+ +..|++|+++++|.+|..+ + . +-.
T Consensus 82 ~d~i~~~e~~Gi~~~e~------~~Gr---~Fp~sd--kA~~Iv~~ll~~~-~~~gV~i~~~~~v~~v~~~-~-~--~f~ 145 (408)
T COG2081 82 EDFIDWVEGLGIALKEE------DLGR---MFPDSD--KASPIVDALLKEL-EALGVTIRTRSRVSSVEKD-D-S--GFR 145 (408)
T ss_pred HHHHHHHHhcCCeeEEc------cCce---ecCCcc--chHHHHHHHHHHH-HHcCcEEEecceEEeEEec-C-c--eEE
Confidence 45666777889876521 2232 221112 3333333333334 6899999999999999887 3 2 223
Q ss_pred EEecCCeEEEEEeCcEEEEcCcchhhhH
Q psy14407 197 YVNSKGETVRVTANKEVILTAGAIANAQ 224 (522)
Q Consensus 197 ~~~~~g~~~~v~A~k~VILaaGai~Tp~ 224 (522)
+..++|+ +++++ .+|||.|...-|+
T Consensus 146 l~t~~g~--~i~~d-~lilAtGG~S~P~ 170 (408)
T COG2081 146 LDTSSGE--TVKCD-SLILATGGKSWPK 170 (408)
T ss_pred EEcCCCC--EEEcc-EEEEecCCcCCCC
Confidence 3333565 79995 6999999888785
No 90
>PRK06185 hypothetical protein; Provisional
Probab=80.57 E-value=4.7 Score=41.65 Aligned_cols=58 Identities=22% Similarity=0.254 Sum_probs=42.2
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHHhCC
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 231 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~SGi 231 (522)
..++++++.+++|++|..+ ++++++|.+...+| +.++++ +.||.|.|+- |. +-...|+
T Consensus 120 ~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g-~~~i~a-~~vI~AdG~~-S~-vr~~~gi 177 (407)
T PRK06185 120 AYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDG-PGEIRA-DLVVGADGRH-SR-VRALAGL 177 (407)
T ss_pred hCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCC-cEEEEe-CEEEECCCCc-hH-HHHHcCC
Confidence 4578999999999999887 66788888775233 367899 5799999864 43 3333344
No 91
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=80.31 E-value=3.9 Score=42.39 Aligned_cols=51 Identities=20% Similarity=0.285 Sum_probs=37.3
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL 227 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl 227 (522)
.+.+++|+.++.|++|..+ ++++++|+.. ++ +++++ .||+|+|+ .+..|+.
T Consensus 212 ~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~--~~---~~~a~-~VV~a~G~-~~~~l~~ 262 (416)
T PRK00711 212 EQLGVKFRFNTPVDGLLVE-GGRITGVQTG--GG---VITAD-AYVVALGS-YSTALLK 262 (416)
T ss_pred HHCCCEEEcCCEEEEEEec-CCEEEEEEeC--Cc---EEeCC-EEEECCCc-chHHHHH
Confidence 4678999999999999887 5566665432 23 57884 79999997 4555554
No 92
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=80.00 E-value=3.7 Score=42.00 Aligned_cols=88 Identities=15% Similarity=0.095 Sum_probs=53.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCCcccceeeecccccCCeecchhhhhcccccCCCCCeEEEcCcEEEEEEecCCCeEEEEEE
Q psy14407 118 IFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEY 197 (522)
Q Consensus 118 ~~~~a~~~~G~~~~~~~n~~~~~~G~~~~~~~~~~g~R~s~~~~~l~~~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~ 197 (522)
.+.+-+++.|++...+ ..|.-.+.+ -+.++-...|...+ ++.|++|+++++|+.| + ++. ..|++
T Consensus 58 d~~~fF~~~Gi~~~~e------~~grvfP~S-----~~A~sVv~~L~~~l-~~~gV~i~~~~~V~~i--~-~~~-~~v~~ 121 (376)
T TIGR03862 58 ALQDWARGLGIETFVG------SSGRVFPVE-----MKAAPLLRAWLKRL-AEQGVQFHTRHRWIGW--Q-GGT-LRFET 121 (376)
T ss_pred HHHHHHHHCCCceEEC------CCCEECCCC-----CCHHHHHHHHHHHH-HHCCCEEEeCCEEEEE--e-CCc-EEEEE
Confidence 4556667789875532 223212111 13334444454455 6899999999999999 3 222 34544
Q ss_pred EecCCeEEEEEeCcEEEEcCcchhhhHH
Q psy14407 198 VNSKGETVRVTANKEVILTAGAIANAQL 225 (522)
Q Consensus 198 ~~~~g~~~~v~A~k~VILaaGai~Tp~L 225 (522)
.. + ...++|+ .||||+|....|++
T Consensus 122 ~~--~-~~~~~a~-~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 122 PD--G-QSTIEAD-AVVLALGGASWSQL 145 (376)
T ss_pred CC--C-ceEEecC-EEEEcCCCcccccc
Confidence 22 2 2358895 79999999877754
No 93
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=79.31 E-value=4.9 Score=42.98 Aligned_cols=55 Identities=20% Similarity=0.239 Sum_probs=42.9
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL 227 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl 227 (522)
...+++++.+++|++|..+ ++ ..+|++.+..|++.+++| +.||.|+|+ .+..|+.
T Consensus 166 ~~~Ga~i~~~~~V~~i~~~-~~-~~~v~~~~~~g~~~~i~a-~~VVnAaG~-wa~~l~~ 220 (502)
T PRK13369 166 AERGATILTRTRCVSARRE-GG-LWRVETRDADGETRTVRA-RALVNAAGP-WVTDVIH 220 (502)
T ss_pred HHCCCEEecCcEEEEEEEc-CC-EEEEEEEeCCCCEEEEEe-cEEEECCCc-cHHHHHh
Confidence 4678999999999999887 44 356777663477788999 589999996 5666665
No 94
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=78.78 E-value=5 Score=41.55 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=38.1
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCe--EEEEEeCcEEEEcCcchhhhHHHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGE--TVRVTANKEVILTAGAIANAQLLLL 228 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~--~~~v~A~k~VILaaGai~Tp~LLl~ 228 (522)
.+.+++++.+++|++|..+ ++.+ .|.+.+ .+. ..+++|+ .||+|+|+ .+..|+..
T Consensus 208 ~~~G~~i~~~~~V~~i~~~-~~~~-~v~~~~-~~~~~~~~i~a~-~vV~a~G~-~s~~l~~~ 264 (410)
T PRK12409 208 ARLGVQFRYGQEVTSIKTD-GGGV-VLTVQP-SAEHPSRTLEFD-GVVVCAGV-GSRALAAM 264 (410)
T ss_pred HhCCCEEEcCCEEEEEEEe-CCEE-EEEEEc-CCCCccceEecC-EEEECCCc-ChHHHHHH
Confidence 4678999999999999876 4443 344443 221 3468895 79999996 56666543
No 95
>PRK07208 hypothetical protein; Provisional
Probab=78.61 E-value=5.3 Score=42.37 Aligned_cols=56 Identities=20% Similarity=0.103 Sum_probs=39.3
Q ss_pred CCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHH
Q psy14407 170 RTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 226 (522)
Q Consensus 170 ~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LL 226 (522)
..+.+|+.++.|++|..++++.+..|.+.+.+|+..++.|+ .||++.-.-...++|
T Consensus 230 ~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad-~VI~a~p~~~l~~~l 285 (479)
T PRK07208 230 ALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTAD-QVISSMPLRELVAAL 285 (479)
T ss_pred HcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcC-EEEECCCHHHHHHhc
Confidence 45789999999999999833445555554435666678894 688887765555554
No 96
>KOG4254|consensus
Probab=77.54 E-value=1.7 Score=44.59 Aligned_cols=58 Identities=24% Similarity=0.376 Sum_probs=43.5
Q ss_pred cccccCCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHH
Q psy14407 163 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL 227 (522)
Q Consensus 163 l~~~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl 227 (522)
|.+.+ ++.+.+|++.+.|.+|+.| +++|.||.+.| |. ++++ |.||=-|+-..|=.=|+
T Consensus 270 ia~~~-~~~GaeI~tka~Vq~Illd-~gka~GV~L~d--G~--ev~s-k~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 270 IAEGA-KRAGAEIFTKATVQSILLD-SGKAVGVRLAD--GT--EVRS-KIVVSNATPWDTFEKLL 327 (561)
T ss_pred HHHHH-Hhccceeeehhhhhheecc-CCeEEEEEecC--Cc--EEEe-eeeecCCchHHHHHHhC
Confidence 44555 7899999999999999999 69999999986 66 4666 55555566665553333
No 97
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=77.23 E-value=7.6 Score=41.72 Aligned_cols=59 Identities=20% Similarity=0.348 Sum_probs=48.3
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhhhHHHHHh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLS 229 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~Tp~LLl~S 229 (522)
+.+|++++.++.|++|.-+ ++++.+|++.+. +|++.++.++ .|+++.|..-++.+|..+
T Consensus 398 ~~~gI~i~~~~~v~~i~~~-~g~v~~v~~~~~~~g~~~~i~~D-~v~~~~G~~p~~~~l~~~ 457 (517)
T PRK15317 398 SLPNVTIITNAQTTEVTGD-GDKVTGLTYKDRTTGEEHHLELE-GVFVQIGLVPNTEWLKGT 457 (517)
T ss_pred cCCCcEEEECcEEEEEEcC-CCcEEEEEEEECCCCcEEEEEcC-EEEEeECCccCchHHhhh
Confidence 3579999999999999766 678889988864 5777789996 799999998877777543
No 98
>PRK08401 L-aspartate oxidase; Provisional
Probab=76.44 E-value=11 Score=39.77 Aligned_cols=46 Identities=15% Similarity=0.307 Sum_probs=35.5
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~T 222 (522)
.+.+++++.+ .|++|..+ +++++||.+ +|. .+.+ +.||||+|++..
T Consensus 131 ~~~gv~i~~~-~v~~l~~~-~g~v~Gv~~---~g~--~i~a-~~VVLATGG~~~ 176 (466)
T PRK08401 131 RELGVNFIRG-FAEELAIK-NGKAYGVFL---DGE--LLKF-DATVIATGGFSG 176 (466)
T ss_pred HhcCCEEEEe-EeEEEEee-CCEEEEEEE---CCE--EEEe-CeEEECCCcCcC
Confidence 4678999876 78888776 678888875 243 5788 479999999875
No 99
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=74.23 E-value=5.6 Score=42.20 Aligned_cols=56 Identities=14% Similarity=0.119 Sum_probs=41.3
Q ss_pred CCCCeEEEcCcEEEEEEecC--CC--eEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIIND--QN--VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 226 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~--~~--~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LL 226 (522)
++.+.+|+.+++|++|+.++ ++ ++++|++.+ ++...++.|+ .||+|..+-...+||
T Consensus 230 ~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~-g~~~~~~~aD-~VVlA~p~~~~~~Ll 289 (474)
T TIGR02732 230 EARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSK-PEGKKVIKAD-AYVAACDVPGIKRLL 289 (474)
T ss_pred HHCCCEEECCCEEEEEEEecCCCCceeEEEEEEec-CCcceEEECC-EEEECCChHHHHhhC
Confidence 45788999999999999862 22 488888754 2112357885 699999988777776
No 100
>PLN02985 squalene monooxygenase
Probab=73.88 E-value=9.7 Score=40.87 Aligned_cols=54 Identities=26% Similarity=0.348 Sum_probs=40.6
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQL 225 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~L 225 (522)
+.+|+++..+ .|+.+..+ ++.+.+|++.+.+|++.++.| +.||.|.|....-|=
T Consensus 159 ~~~~V~i~~g-tvv~li~~-~~~v~gV~~~~~dG~~~~~~A-dLVVgADG~~S~vR~ 212 (514)
T PLN02985 159 SLPNVRLEEG-TVKSLIEE-KGVIKGVTYKNSAGEETTALA-PLTVVCDGCYSNLRR 212 (514)
T ss_pred hCCCeEEEee-eEEEEEEc-CCEEEEEEEEcCCCCEEEEEC-CEEEECCCCchHHHH
Confidence 5679999855 67777666 567889998765788888999 589999997554443
No 101
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=73.68 E-value=2 Score=44.60 Aligned_cols=90 Identities=23% Similarity=0.221 Sum_probs=46.6
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCcccceeeecccccCCeecchhhhhcccccCCCCCeEEEcCcEEEEEEecCCCeEEEEE
Q psy14407 117 EIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVE 196 (522)
Q Consensus 117 ~~~~~a~~~~G~~~~~~~n~~~~~~G~~~~~~~~~~g~R~s~~~~~l~~~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~ 196 (522)
..+.+-+++.|++..... .|.-.+.+ ..-.+....++ ..+ .+.+++|+++++|+.|..+ ++.+..|+
T Consensus 80 ~d~~~ff~~~Gv~~~~~~------~gr~fP~s----~~a~~Vv~~L~-~~l-~~~gv~i~~~~~V~~i~~~-~~~~f~v~ 146 (409)
T PF03486_consen 80 EDLIAFFEELGVPTKIEE------DGRVFPKS----DKASSVVDALL-EEL-KRLGVEIHFNTRVKSIEKK-EDGVFGVK 146 (409)
T ss_dssp HHHHHHHHHTT--EEE-S------TTEEEETT------HHHHHHHHH-HHH-HHHT-EEE-S--EEEEEEE-TTEEEEEE
T ss_pred HHHHHHHHhcCCeEEEcC------CCEECCCC----CcHHHHHHHHH-HHH-HHcCCEEEeCCEeeeeeec-CCceeEee
Confidence 345666777888754221 22222211 11222222333 333 5789999999999999987 66677777
Q ss_pred EEecCCeEEEEEeCcEEEEcCcchhhhH
Q psy14407 197 YVNSKGETVRVTANKEVILTAGAIANAQ 224 (522)
Q Consensus 197 ~~~~~g~~~~v~A~k~VILaaGai~Tp~ 224 (522)
. + ++ .++.++ .||||+|...-|+
T Consensus 147 ~-~-~~--~~~~a~-~vILAtGG~S~p~ 169 (409)
T PF03486_consen 147 T-K-NG--GEYEAD-AVILATGGKSYPK 169 (409)
T ss_dssp E-T-TT--EEEEES-EEEE----SSSGG
T ss_pred c-c-Cc--ccccCC-EEEEecCCCCccc
Confidence 6 2 23 368895 7999999887775
No 102
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=73.38 E-value=6.3 Score=42.88 Aligned_cols=47 Identities=28% Similarity=0.459 Sum_probs=37.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~T 222 (522)
+.+|++|+ .+.|++|..+ ++++.||...+ |. .+.| +.||+|+|++-.
T Consensus 112 ~~~nV~I~-q~~V~~Li~e-~grV~GV~t~d--G~--~I~A-k~VIlATGTFL~ 158 (618)
T PRK05192 112 NQPNLDLF-QGEVEDLIVE-NGRVVGVVTQD--GL--EFRA-KAVVLTTGTFLR 158 (618)
T ss_pred cCCCcEEE-EeEEEEEEec-CCEEEEEEECC--CC--EEEC-CEEEEeeCcchh
Confidence 56799986 6679999887 77899998754 53 6889 589999998643
No 103
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=72.50 E-value=13 Score=36.14 Aligned_cols=58 Identities=26% Similarity=0.349 Sum_probs=44.3
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhhhHHHHHh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLS 229 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~Tp~LLl~S 229 (522)
+..++++++++.|++|..+ + ++.+|++.+. +|+..++.++ .||+|.|...+..+|..+
T Consensus 188 ~~~gv~~~~~~~v~~i~~~-~-~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~~~~~~l~~~ 246 (300)
T TIGR01292 188 KNPNIEFLWNSTVKEIVGD-N-KVEGVKIKNTVTGEEEELKVD-GVFIAIGHEPNTELLKGL 246 (300)
T ss_pred hCCCeEEEeccEEEEEEcc-C-cEEEEEEEecCCCceEEEEcc-EEEEeeCCCCChHHHHHh
Confidence 3449999999999999765 3 6777877653 5777889995 899999977666666554
No 104
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=71.27 E-value=8.9 Score=39.47 Aligned_cols=54 Identities=20% Similarity=0.190 Sum_probs=39.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHHhCC
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 231 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~SGi 231 (522)
...+++++.+++|++|..+ ++.+ .|+.. +| ++.++ .||+|+|+ .++.++...|+
T Consensus 160 ~~~Gv~i~~~~~V~~i~~~-~~~~-~V~~~--~g---~i~ad-~vV~A~G~-~s~~l~~~~g~ 213 (393)
T PRK11728 160 QARGGEIRLGAEVTALDEH-ANGV-VVRTT--QG---EYEAR-TLINCAGL-MSDRLAKMAGL 213 (393)
T ss_pred HhCCCEEEcCCEEEEEEec-CCeE-EEEEC--CC---EEEeC-EEEECCCc-chHHHHHHhCC
Confidence 4678999999999999876 4433 34332 34 58895 79999997 67787776654
No 105
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=71.08 E-value=10 Score=37.74 Aligned_cols=59 Identities=22% Similarity=0.354 Sum_probs=51.3
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhhhHHHHHh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLS 229 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~Tp~LLl~S 229 (522)
.-+|++|++++.-+.|.-+ |.+|+|++|++. +|+.+.+.=. .|++--|-+-+..+|.-+
T Consensus 401 sl~Nv~ii~na~Ttei~Gd-g~kV~Gl~Y~dr~sge~~~l~Le-GvFVqIGL~PNT~WLkg~ 460 (520)
T COG3634 401 SLPNVTIITNAQTTEVKGD-GDKVTGLEYRDRVSGEEHHLELE-GVFVQIGLLPNTEWLKGA 460 (520)
T ss_pred cCCCcEEEecceeeEEecC-CceecceEEEeccCCceeEEEee-eeEEEEecccChhHhhch
Confidence 6799999999999998777 889999999987 7888888874 588889988888888755
No 106
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=70.79 E-value=10 Score=39.61 Aligned_cols=61 Identities=26% Similarity=0.401 Sum_probs=41.1
Q ss_pred hhcccccCCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHHhCC
Q psy14407 161 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 231 (522)
Q Consensus 161 ~~l~~~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~SGi 231 (522)
.+|...+ .+.+++|+.+++|++|..+ ++++++|. . +|. +++| +.||+|.|+ + ..|....|+
T Consensus 112 ~~L~~~a-~~~Gv~i~~~~~V~~i~~~-~g~v~~v~--~-~g~--~i~A-~~VI~A~G~-~-s~l~~~lgl 172 (428)
T PRK10157 112 AWLMEQA-EEAGAQLITGIRVDNLVQR-DGKVVGVE--A-DGD--VIEA-KTVILADGV-N-SILAEKLGM 172 (428)
T ss_pred HHHHHHH-HHCCCEEECCCEEEEEEEe-CCEEEEEE--c-CCc--EEEC-CEEEEEeCC-C-HHHHHHcCC
Confidence 4454434 4678999999999999877 56665553 2 344 5789 589999997 3 344444443
No 107
>PRK06126 hypothetical protein; Provisional
Probab=70.74 E-value=11 Score=40.66 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=37.8
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA 221 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~ 221 (522)
+.++++|+.+++|++|..+ ++.++ |.+.+. +|+..++++ +.||.|.|+-.
T Consensus 138 ~~~~v~i~~~~~v~~i~~~-~~~v~-v~~~~~~~g~~~~i~a-d~vVgADG~~S 188 (545)
T PRK06126 138 AQPGVTLRYGHRLTDFEQD-ADGVT-ATVEDLDGGESLTIRA-DYLVGCDGARS 188 (545)
T ss_pred hCCCceEEeccEEEEEEEC-CCeEE-EEEEECCCCcEEEEEE-EEEEecCCcch
Confidence 4578999999999999887 44444 555553 677789999 57888888643
No 108
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=69.81 E-value=11 Score=38.47 Aligned_cols=56 Identities=23% Similarity=0.285 Sum_probs=43.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcch-hhhHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAI-ANAQLL 226 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai-~Tp~LL 226 (522)
..+++.+++.++|.+++-..+|+ ..+.++.. .|+..+++.+ .||||.|-= ..|.+|
T Consensus 289 ~~~~v~l~~~~ev~~~~~~G~g~-~~l~~~~~~~~~~~t~~~D-~vIlATGY~~~~P~fL 346 (436)
T COG3486 289 RKPDVRLLSLSEVQSVEPAGDGR-YRLTLRHHETGELETVETD-AVILATGYRRAVPSFL 346 (436)
T ss_pred CCCCeeeccccceeeeecCCCce-EEEEEeeccCCCceEEEee-EEEEecccccCCchhh
Confidence 47899999999999998873344 56666654 6788889985 799999965 456555
No 109
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=68.30 E-value=6.7 Score=42.60 Aligned_cols=53 Identities=26% Similarity=0.487 Sum_probs=39.8
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL 227 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl 227 (522)
+.+|++++.+ .|+.+..++++++.+|++.+ |. .+.| +.||||+|++...+++.
T Consensus 108 ~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~--G~--~I~A-d~VILATGtfL~g~ihi 160 (617)
T TIGR00136 108 NQPNLSLFQG-EVEDLILEDNDEIKGVVTQD--GL--KFRA-KAVIITTGTFLRGKIHI 160 (617)
T ss_pred cCCCcEEEEe-EEEEEEEecCCcEEEEEECC--CC--EEEC-CEEEEccCcccCCCEEe
Confidence 5679999855 67777665356789998754 54 6889 58999999997666665
No 110
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=67.75 E-value=11 Score=38.39 Aligned_cols=51 Identities=27% Similarity=0.325 Sum_probs=35.4
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLL 228 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~ 228 (522)
...+++++.+++|++|..+ ++.+ .|+.. ++ ++.++ .||+|+|+. +..|+..
T Consensus 156 ~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~--~~---~i~a~-~vV~aaG~~-~~~l~~~ 206 (380)
T TIGR01377 156 EAHGATVRDGTKVVEIEPT-ELLV-TVKTT--KG---SYQAN-KLVVTAGAW-TSKLLSP 206 (380)
T ss_pred HHcCCEEECCCeEEEEEec-CCeE-EEEeC--CC---EEEeC-EEEEecCcc-hHHHhhh
Confidence 4568999999999999876 4443 24322 33 58885 699999984 4455543
No 111
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=67.40 E-value=16 Score=39.15 Aligned_cols=56 Identities=21% Similarity=0.429 Sum_probs=45.1
Q ss_pred CCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhhhHHHH
Q psy14407 170 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLL 227 (522)
Q Consensus 170 ~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~Tp~LLl 227 (522)
..|++++.++.|++|.-+ ++++.+|++.+. +|+..++.++ .||+|.|..-+..+|-
T Consensus 400 ~~gV~i~~~~~v~~i~~~-~~~v~~v~~~~~~~~~~~~i~~D-~vi~a~G~~Pn~~~l~ 456 (515)
T TIGR03140 400 LPNVDILTSAQTTEIVGD-GDKVTGIRYQDRNSGEEKQLDLD-GVFVQIGLVPNTEWLK 456 (515)
T ss_pred CCCCEEEECCeeEEEEcC-CCEEEEEEEEECCCCcEEEEEcC-EEEEEeCCcCCchHHh
Confidence 469999999999999765 567888988764 4666789996 7999999887777664
No 112
>PLN02487 zeta-carotene desaturase
Probab=66.96 E-value=12 Score=40.56 Aligned_cols=56 Identities=14% Similarity=0.136 Sum_probs=41.2
Q ss_pred CCCCeEEEcCcEEEEEEec-C-CC--eEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIIN-D-QN--VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 226 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~-~-~~--~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LL 226 (522)
++.+.+|+.++.|++|+.+ + ++ +++||++.+ ++....+.++ .||++++.-...+||
T Consensus 306 ~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~-~~~~~~~~aD-~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 306 TDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK-ATEKEIVKAD-AYVAACDVPGIKRLL 365 (569)
T ss_pred HHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec-CCCceEEECC-EEEECCCHHHHHHhC
Confidence 4778899999999999997 2 22 589998853 3444457885 699988876555554
No 113
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=65.80 E-value=7.2 Score=41.54 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=36.1
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL 227 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl 227 (522)
+..+.+|+++++|++|+.+ ++++ +.+...+| ..+.+ +.||.++.. ..+..|.
T Consensus 235 ~~~Gg~I~~~~~V~~I~v~-~g~g--~~~~~~~g--~~~~a-d~vv~~~~~-~~~~~l~ 286 (487)
T COG1233 235 REHGGEIRTGAEVSQILVE-GGKG--VGVRTSDG--ENIEA-DAVVSNADP-ALLARLL 286 (487)
T ss_pred HHcCCEEECCCceEEEEEe-CCcc--eEEecccc--ceecc-ceeEecCch-hhhhhhh
Confidence 6789999999999999998 6664 44444335 67788 456666665 4444444
No 114
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=65.72 E-value=11 Score=36.42 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=41.8
Q ss_pred CCCCeEEEcCcEEEEEEecCC-CeEEEEEEEec----CC---eEEEEEeCcEEEEcCcc-hhhhHHHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQ-NVATGVEYVNS----KG---ETVRVTANKEVILTAGA-IANAQLLLL 228 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~-~~a~gV~~~~~----~g---~~~~v~A~k~VILaaGa-i~Tp~LLl~ 228 (522)
...+++++.++.|+.|..+++ .++.||.+... .| ...+++| |.||.|+|. =...+.|.+
T Consensus 111 ~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~A-k~VVdATG~~a~v~~~l~~ 178 (254)
T TIGR00292 111 LQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRS-RVVVDATGHDAEIVAVCAK 178 (254)
T ss_pred HHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEc-CEEEEeecCCchHHHHHHH
Confidence 356799999999999988733 37999987421 22 3578999 689999993 234455544
No 115
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=65.13 E-value=13 Score=36.79 Aligned_cols=59 Identities=22% Similarity=0.321 Sum_probs=45.3
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEE--ec----CCe--------EEEEEeCcEEEEcCcchhhhHHHHHh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYV--NS----KGE--------TVRVTANKEVILTAGAIANAQLLLLS 229 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~--~~----~g~--------~~~v~A~k~VILaaGai~Tp~LLl~S 229 (522)
.++.++....++|.+|... +++++||.-. .+ .|+ .+++.| ..||++.|.|+--.=|.+-
T Consensus 164 ~~~~v~f~~RHrV~~l~~t-~grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A-~aviv~SGGIGGnhelVRr 236 (552)
T COG3573 164 RRGRVTFRFRHRVDGLTTT-GGRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSA-SAVIVASGGIGGNHELVRR 236 (552)
T ss_pred hCCceEEEeeeeccceEee-CCeEeeecccccCCCccccCCCccceeecceEEee-eeEEEecCCcCCCHHHHHh
Confidence 6888999999999999998 8899998742 22 121 378889 4799999988766666553
No 116
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=64.89 E-value=15 Score=37.58 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=33.9
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 226 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LL 226 (522)
.+ +++++.++.|+.|..+ +++ ..|+ ..+|. .+.| +.||+|+|+ .++.|+
T Consensus 146 ~~-G~~i~~~~~V~~i~~~-~~~-~~v~--t~~g~--~~~a-~~vV~a~G~-~~~~l~ 194 (381)
T TIGR03197 146 GI-RLTLHFNTEITSLERD-GEG-WQLL--DANGE--VIAA-SVVVLANGA-QAGQLA 194 (381)
T ss_pred CC-CcEEEeCCEEEEEEEc-CCe-EEEE--eCCCC--EEEc-CEEEEcCCc-cccccc
Confidence 45 8999999999999876 443 2333 22454 3688 479999996 455443
No 117
>PRK10262 thioredoxin reductase; Provisional
Probab=62.71 E-value=32 Score=34.20 Aligned_cols=60 Identities=13% Similarity=0.214 Sum_probs=44.4
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec--CCeEEEEEeCcEEEEcCcchhhhHHHHHhCC
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS--KGETVRVTANKEVILTAGAIANAQLLLLSGI 231 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~--~g~~~~v~A~k~VILaaGai~Tp~LLl~SGi 231 (522)
+..++++++++.|++|.-+ +.++.+|++.+. ++...++.++ .||++.|..-...|+ ++++
T Consensus 196 ~~~gV~i~~~~~v~~v~~~-~~~~~~v~~~~~~~~~~~~~i~~D-~vv~a~G~~p~~~l~-~~~l 257 (321)
T PRK10262 196 ENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESLDVA-GLFVAIGHSPNTAIF-EGQL 257 (321)
T ss_pred cCCCeEEEeCCEEEEEEcC-CccEEEEEEEEcCCCCeEEEEECC-EEEEEeCCccChhHh-hccc
Confidence 5778999999999998765 446778888753 2445679995 799999977666644 4444
No 118
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=62.68 E-value=17 Score=36.99 Aligned_cols=49 Identities=24% Similarity=0.329 Sum_probs=34.5
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 226 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LL 226 (522)
.+.+++++.+++|++|..+ ++. +.+...+| ++++ +.||+|+|+. +..|+
T Consensus 160 ~~~gv~i~~~~~v~~i~~~-~~~---~~v~~~~g---~~~a-~~vV~A~G~~-~~~l~ 208 (376)
T PRK11259 160 REAGAELLFNEPVTAIEAD-GDG---VTVTTADG---TYEA-KKLVVSAGAW-VKDLL 208 (376)
T ss_pred HHCCCEEECCCEEEEEEee-CCe---EEEEeCCC---EEEe-eEEEEecCcc-hhhhc
Confidence 4678999999999999886 442 33333244 5788 5799999974 44444
No 119
>PRK12831 putative oxidoreductase; Provisional
Probab=61.27 E-value=22 Score=37.64 Aligned_cols=56 Identities=11% Similarity=0.246 Sum_probs=41.4
Q ss_pred CCCeEEEcCcEEEEEEecCCCeEEEEEEEec----------------CCeEEEEEeCcEEEEcCcchhhhHHH
Q psy14407 170 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS----------------KGETVRVTANKEVILTAGAIANAQLL 226 (522)
Q Consensus 170 ~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~----------------~g~~~~v~A~k~VILaaGai~Tp~LL 226 (522)
..++++++++.+++|..++++++.+|++... +|++.++.++ .||+|.|..-...++
T Consensus 330 ~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D-~Vi~AiG~~p~~~~~ 401 (464)
T PRK12831 330 EEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVD-TVIMSLGTSPNPLIS 401 (464)
T ss_pred HcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECC-EEEECCCCCCChhhh
Confidence 5789999999999997654578888887521 2455689996 799999965444433
No 120
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=60.46 E-value=17 Score=36.78 Aligned_cols=48 Identities=23% Similarity=0.347 Sum_probs=30.9
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCc
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAG 218 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaG 218 (522)
.+..++|+++++|+.+..++++ -..+.+.+. .|+..++.++ .||||.|
T Consensus 290 g~~~~~l~~~~~v~~~~~~~~~-~~~l~~~~~~~~~~~~~~~D-~VilATG 338 (341)
T PF13434_consen 290 GRGRLRLLPNTEVTSAEQDGDG-GVRLTLRHRQTGEEETLEVD-AVILATG 338 (341)
T ss_dssp T---SEEETTEEEEEEEEES-S-SEEEEEEETTT--EEEEEES-EEEE---
T ss_pred CCCCeEEeCCCEEEEEEECCCC-EEEEEEEECCCCCeEEEecC-EEEEcCC
Confidence 4567999999999999988323 234666664 6788999996 7999998
No 121
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=59.42 E-value=21 Score=36.80 Aligned_cols=50 Identities=22% Similarity=0.222 Sum_probs=36.3
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~T 222 (522)
+.++++++.+++|++|..+ ++. +.|++.+ ++.+.++++ +.||.|-|+-..
T Consensus 133 ~~~~v~i~~~~~v~~v~~~-~~~-~~v~~~~-~~~~~~i~a-dlvIgADG~~S~ 182 (415)
T PRK07364 133 SCPNITWLCPAEVVSVEYQ-QDA-ATVTLEI-EGKQQTLQS-KLVVAADGARSP 182 (415)
T ss_pred cCCCcEEEcCCeeEEEEec-CCe-eEEEEcc-CCcceEEee-eEEEEeCCCCch
Confidence 4578999999999999876 333 2355554 455568999 589999997443
No 122
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=59.28 E-value=12 Score=39.44 Aligned_cols=69 Identities=22% Similarity=0.226 Sum_probs=46.2
Q ss_pred hhhhcccccCCCCCeE--EEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHHhCC
Q psy14407 159 ADAYLTPIAGKRTNLY--VLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 231 (522)
Q Consensus 159 ~~~~l~~~~~~~~n~~--v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~SGi 231 (522)
...||...+ ++-++. |+.+++|++|..+ +++ ..|+..+.++...+...+ .||||.|....|++.---|+
T Consensus 113 v~~YL~~~a-~~fgl~~~I~~~t~V~~V~~~-~~~-w~V~~~~~~~~~~~~~~d-~VIvAtG~~~~P~~P~ipG~ 183 (461)
T PLN02172 113 VLAYLQDFA-REFKIEEMVRFETEVVRVEPV-DGK-WRVQSKNSGGFSKDEIFD-AVVVCNGHYTEPNVAHIPGI 183 (461)
T ss_pred HHHHHHHHH-HHcCCcceEEecCEEEEEeec-CCe-EEEEEEcCCCceEEEEcC-EEEEeccCCCCCcCCCCCCc
Confidence 336776644 566776 8999999999876 432 334444422334456674 69999999888888754443
No 123
>PLN02612 phytoene desaturase
Probab=57.85 E-value=15 Score=39.88 Aligned_cols=45 Identities=16% Similarity=0.157 Sum_probs=34.0
Q ss_pred CCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcc
Q psy14407 170 RTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGA 219 (522)
Q Consensus 170 ~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGa 219 (522)
+.+.+|++++.|++|..++++++++|++. +|+ ++.++ .||++...
T Consensus 320 ~~G~~I~l~~~V~~I~~~~~g~v~~v~~~--~G~--~~~ad-~VI~a~p~ 364 (567)
T PLN02612 320 SLGGEVRLNSRIKKIELNDDGTVKHFLLT--NGS--VVEGD-VYVSATPV 364 (567)
T ss_pred hcCCEEEeCCeeeEEEECCCCcEEEEEEC--CCc--EEECC-EEEECCCH
Confidence 45789999999999998745667777764 465 47785 68888754
No 124
>PRK10015 oxidoreductase; Provisional
Probab=57.44 E-value=17 Score=37.96 Aligned_cols=51 Identities=24% Similarity=0.304 Sum_probs=36.8
Q ss_pred hhcccccCCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcc
Q psy14407 161 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGA 219 (522)
Q Consensus 161 ~~l~~~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGa 219 (522)
.+|...+ ...+++++.+++|+.|..+ ++++++|.. ++ .+++| +.||+|.|+
T Consensus 112 ~~L~~~a-~~~Gv~i~~~~~V~~i~~~-~~~v~~v~~---~~--~~i~A-~~VI~AdG~ 162 (429)
T PRK10015 112 PWLMEQA-EQAGAQFIPGVRVDALVRE-GNKVTGVQA---GD--DILEA-NVVILADGV 162 (429)
T ss_pred HHHHHHH-HHcCCEEECCcEEEEEEEe-CCEEEEEEe---CC--eEEEC-CEEEEccCc
Confidence 4454433 4668999999999999876 566666642 22 36899 589999996
No 125
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=56.73 E-value=28 Score=36.57 Aligned_cols=57 Identities=12% Similarity=0.218 Sum_probs=41.2
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEe-------cC---------CeEEEEEeCcEEEEcCcchhhhHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVN-------SK---------GETVRVTANKEVILTAGAIANAQLL 226 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~-------~~---------g~~~~v~A~k~VILaaGai~Tp~LL 226 (522)
...+++++.++.+++|.-++++++++|++.. .+ |...++.++ .||+|.|-.-...+|
T Consensus 320 ~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D-~Vi~AiG~~p~~~~l 392 (449)
T TIGR01316 320 EEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEAD-AVIVAIGNGSNPIMA 392 (449)
T ss_pred HhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECC-EEEECCCCCCCchhh
Confidence 4678999999999999765456888888752 12 335679996 799999964444333
No 126
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=56.70 E-value=29 Score=36.58 Aligned_cols=52 Identities=21% Similarity=0.351 Sum_probs=41.1
Q ss_pred CCCCeEEEcCcEEEEEEec---CCCeEEEEEEEecCCeE--EEEEeCcEEEEcCcchh
Q psy14407 169 KRTNLYVLKRSKVTKVIIN---DQNVATGVEYVNSKGET--VRVTANKEVILTAGAIA 221 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~---~~~~a~gV~~~~~~g~~--~~v~A~k~VILaaGai~ 221 (522)
+..+++...+++|+.|.++ +..+|+++++.. +|+. ..+..+..||+.-|++-
T Consensus 218 ~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~-~g~~~~i~l~~~DlV~vT~GS~t 274 (500)
T PF06100_consen 218 KSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQ-DGKEETIDLGPDDLVFVTNGSMT 274 (500)
T ss_pred HHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEc-CCCeeEEEeCCCCEEEEECCccc
Confidence 6789999999999999997 234678888876 6654 55667678999999763
No 127
>PRK12839 hypothetical protein; Provisional
Probab=55.68 E-value=19 Score=39.19 Aligned_cols=57 Identities=21% Similarity=0.287 Sum_probs=45.1
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 226 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LL 226 (522)
.+.+++|+.++.|++|+.+++++|+||.+.+.+| ..++.++|.||||+|+++.-.-|
T Consensus 225 ~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g-~~~i~aak~VVLAtGGf~~n~~~ 281 (572)
T PRK12839 225 DDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDG-AVTVEATRGVVLATGGFPNDVDR 281 (572)
T ss_pred HHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCC-cEEEEeCCEEEEcCCCcccCHHH
Confidence 4678999999999999876467999999877445 45666657899999999874433
No 128
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=55.64 E-value=35 Score=36.86 Aligned_cols=56 Identities=20% Similarity=0.185 Sum_probs=40.5
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL 227 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl 227 (522)
+.++++|+.+++|+.|..+ +..+ .|++.+.+|++.++++ +-||-|-|+-.+.|=++
T Consensus 125 ~~~gv~v~~g~~v~~i~~~-~~~v-~v~~~~~~G~~~~i~a-d~vVgADG~~S~vR~~l 180 (538)
T PRK06183 125 RFPHVRVRFGHEVTALTQD-DDGV-TVTLTDADGQRETVRA-RYVVGCDGANSFVRRTL 180 (538)
T ss_pred hCCCcEEEcCCEEEEEEEc-CCeE-EEEEEcCCCCEEEEEE-EEEEecCCCchhHHHHc
Confidence 4478999999999999887 3333 4556544677789999 57888888755554433
No 129
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=55.37 E-value=19 Score=39.14 Aligned_cols=63 Identities=14% Similarity=0.075 Sum_probs=47.5
Q ss_pred CCCCcccccccccCCCCCCcccCCCCceeCcCCceEec---ccCCC-CCCC-chhHHHHHHHHHHHHHHHhhh
Q psy14407 450 TTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVAD---ISVLP-NAII-TQSDAISYMIGEKCADLVKTS 517 (522)
Q Consensus 450 ~~~~H~~Gt~rMG~~~~~~~VVD~~~rv~g~~NL~V~D---aSv~P-~~~~-~NPtlTi~Ala~r~Ad~i~~~ 517 (522)
....|-+|+.+.-.+ .-|+|.++++ ++|||.++ ++++- .-++ ++.....+..+..++++++++
T Consensus 497 p~~~~T~GGl~id~~---~qVLd~dg~p--I~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa~~ 564 (564)
T PRK12845 497 LSDLGTCGGLRADER---ARVLREDGSV--IDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAAAR 564 (564)
T ss_pred cccceecCCeeECCC---ceEECCCCCC--CCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHhcC
Confidence 345777888888754 3899999996 89999997 44443 2233 778888899999999988753
No 130
>KOG2852|consensus
Probab=53.94 E-value=11 Score=36.73 Aligned_cols=64 Identities=17% Similarity=0.339 Sum_probs=43.8
Q ss_pred cccccCCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHHhCC
Q psy14407 163 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 231 (522)
Q Consensus 163 l~~~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~SGi 231 (522)
+..+. ++.|++++.+. |..+. ++..|+.+|......+..+...+. .||||||- -|++||..-+|
T Consensus 154 ~sea~-k~~~V~lv~Gk-v~ev~-dEk~r~n~v~~ae~~~ti~~~d~~-~ivvsaGP-WTskllp~~rI 217 (380)
T KOG2852|consen 154 LSEAE-KRGGVKLVFGK-VKEVS-DEKHRINSVPKAEAEDTIIKADVH-KIVVSAGP-WTSKLLPFTRI 217 (380)
T ss_pred HHHHH-hhcCeEEEEee-eEEee-cccccccccchhhhcCceEEeeee-EEEEecCC-Cchhhcccccc
Confidence 44566 88999999885 44443 335677777665322334566674 69999997 89999988655
No 131
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=53.83 E-value=27 Score=36.95 Aligned_cols=59 Identities=22% Similarity=0.219 Sum_probs=42.9
Q ss_pred CCCeEEEcCcEEEEEEecCCCeEEEEEEEec----------CCeEEEEEeCcEEEEcCcchhh-hHHHHHhC
Q psy14407 170 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS----------KGETVRVTANKEVILTAGAIAN-AQLLLLSG 230 (522)
Q Consensus 170 ~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~----------~g~~~~v~A~k~VILaaGai~T-p~LLl~SG 230 (522)
..++++++++.+++|.-+ ++++++|++... .|++.++.++ .||+|.|..-+ ..||...|
T Consensus 341 ~~GV~i~~~~~~~~i~~~-~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D-~VI~A~G~~p~~~~l~~~~g 410 (471)
T PRK12810 341 EEGVEREFNVQTKEFEGE-NGKVTGVKVVRTELGEGDFEPVEGSEFVLPAD-LVLLAMGFTGPEAGLLAQFG 410 (471)
T ss_pred HcCCeEEeccCceEEEcc-CCEEEEEEEEEEEecCCCccccCCceEEEECC-EEEECcCcCCCchhhccccC
Confidence 568999999999999654 678888887521 2556789996 79999995443 34554444
No 132
>PRK07233 hypothetical protein; Provisional
Probab=51.60 E-value=28 Score=36.02 Aligned_cols=51 Identities=31% Similarity=0.279 Sum_probs=36.8
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 226 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LL 226 (522)
...+.+|+.++.|++|..+ +++++.|. . +++ ++.++ .||+|+..-..++||
T Consensus 209 ~~~g~~v~~~~~V~~i~~~-~~~~~~~~--~-~~~--~~~ad-~vI~a~p~~~~~~ll 259 (434)
T PRK07233 209 EARGGEIRLGTPVTSVVID-GGGVTGVE--V-DGE--EEDFD-AVISTAPPPILARLV 259 (434)
T ss_pred HhcCceEEeCCCeeEEEEc-CCceEEEE--e-CCc--eEECC-EEEECCCHHHHHhhc
Confidence 3557899999999999887 55565554 2 344 57885 699999876666554
No 133
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=51.12 E-value=11 Score=37.31 Aligned_cols=51 Identities=12% Similarity=0.107 Sum_probs=43.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANA 223 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp 223 (522)
.+.+-.++++-+|.+..+. +++|+.|..+ ++....++| +.+|||.|++-|-
T Consensus 269 ~~~Gg~~m~Gd~V~~a~~~-~~~v~~i~tr--n~~diP~~a-~~~VLAsGsffsk 319 (421)
T COG3075 269 EQLGGLWMPGDEVKKATCK-GGRVTEIYTR--NHADIPLRA-DFYVLASGSFFSK 319 (421)
T ss_pred HHcCceEecCCceeeeeee-CCeEEEEEec--ccccCCCCh-hHeeeeccccccc
Confidence 4667889999999999998 8899998777 588889999 4899999987553
No 134
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=50.53 E-value=28 Score=36.80 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=38.6
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQL 225 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~L 225 (522)
++.+++|+++++|++|.-+ ++. ..|++...+|+..++.++ .||+|.|..-+..+
T Consensus 224 ~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~~~~g~~~~i~~D-~vi~a~G~~pn~~~ 277 (466)
T PRK07818 224 KKLGVKILTGTKVESIDDN-GSK-VTVTVSKKDGKAQELEAD-KVLQAIGFAPRVEG 277 (466)
T ss_pred HHCCCEEEECCEEEEEEEe-CCe-EEEEEEecCCCeEEEEeC-EEEECcCcccCCCC
Confidence 4679999999999999765 333 234444225766789995 79999997655544
No 135
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=50.35 E-value=23 Score=37.52 Aligned_cols=55 Identities=18% Similarity=0.351 Sum_probs=39.9
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 226 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LL 226 (522)
...+++|+++++|++|..+ ++.+ .|++.+.+|++.++.++ .||+|.|..-+...|
T Consensus 235 ~~~gi~i~~~~~v~~i~~~-~~~v-~v~~~~~~g~~~~i~~D-~vl~a~G~~p~~~~l 289 (475)
T PRK06327 235 TKQGLDIHLGVKIGEIKTG-GKGV-SVAYTDADGEAQTLEVD-KLIVSIGRVPNTDGL 289 (475)
T ss_pred HHcCcEEEeCcEEEEEEEc-CCEE-EEEEEeCCCceeEEEcC-EEEEccCCccCCCCC
Confidence 4678999999999999776 3333 35555434666789996 799999977665543
No 136
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=48.70 E-value=25 Score=36.29 Aligned_cols=51 Identities=31% Similarity=0.393 Sum_probs=35.7
Q ss_pred hcccccCCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcc
Q psy14407 162 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGA 219 (522)
Q Consensus 162 ~l~~~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGa 219 (522)
+|...+ ...+++++++++|+.+..++++.+.++. .. . .+++| |.||.|-|+
T Consensus 100 ~La~~A-~~aGae~~~~~~~~~~~~~~~~~~~~~~-~~---~-~e~~a-~~vI~AdG~ 150 (396)
T COG0644 100 WLAERA-EEAGAELYPGTRVTGVIREDDGVVVGVR-AG---D-DEVRA-KVVIDADGV 150 (396)
T ss_pred HHHHHH-HHcCCEEEeceEEEEEEEeCCcEEEEEE-cC---C-EEEEc-CEEEECCCc
Confidence 454433 5789999999999999998444444433 22 2 78999 578888774
No 137
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=48.61 E-value=31 Score=34.26 Aligned_cols=60 Identities=18% Similarity=0.172 Sum_probs=38.2
Q ss_pred hhhhcccccCCCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhhh
Q psy14407 159 ADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANA 223 (522)
Q Consensus 159 ~~~~l~~~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~Tp 223 (522)
....|...+ ...+++++.+++|+.+..+ ...++. .+.+. +|+..+++|+ .||-|-|+ .|.
T Consensus 113 l~~~L~~~~-~~~gv~i~~~~~v~~~~~d-~~~~~~-~~~~~~~g~~~~i~ad-lvVgADG~-~S~ 173 (356)
T PF01494_consen 113 LDRALREEA-EERGVDIRFGTRVVSIEQD-DDGVTV-VVRDGEDGEEETIEAD-LVVGADGA-HSK 173 (356)
T ss_dssp HHHHHHHHH-HHHTEEEEESEEEEEEEEE-TTEEEE-EEEETCTCEEEEEEES-EEEE-SGT-T-H
T ss_pred HHHhhhhhh-hhhhhhheeeeeccccccc-cccccc-ccccccCCceeEEEEe-eeecccCc-ccc
Confidence 334454433 3445999999999999887 444443 34443 6888899994 66666664 553
No 138
>KOG2495|consensus
Probab=47.62 E-value=16 Score=37.54 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=36.8
Q ss_pred CcccccccccCCCCC---CcccCCCCceeCcCCceEe-cccCCCCCCCchhHHHHHHHHHHHHHHHhhhc
Q psy14407 453 SNPVGTVMMGNADDP---NAVVTPDLKVKGIKGLRVA-DISVLPNAIITQSDAISYMIGEKCADLVKTSY 518 (522)
Q Consensus 453 ~H~~Gt~rMG~~~~~---~~VVD~~~rv~g~~NL~V~-DaSv~P~~~~~NPtlTi~Ala~r~Ad~i~~~~ 518 (522)
.-|..+--|-.-++. .=.||+.+||.|++|+|-+ |++.+|... | ..-+|++-++.+++.+
T Consensus 329 ~rp~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~~---~---tAQVA~QqG~yLAk~f 392 (491)
T KOG2495|consen 329 PRPVIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGLK---P---TAQVAEQQGAYLAKNF 392 (491)
T ss_pred CchhhhhHhhcCCccCceeeeeeceeeccCcCceEEeccccccccCc---c---HHHHHHHHHHHHHHHH
Confidence 344444445443322 1489999999999999955 566455443 3 4456666666665544
No 139
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=47.27 E-value=35 Score=36.07 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=42.2
Q ss_pred CCCeEEEcCcEEEEEEecCCCeEEEEEEEe-------c---------CCeEEEEEeCcEEEEcCcchhh-hHHHHHhC
Q psy14407 170 RTNLYVLKRSKVTKVIINDQNVATGVEYVN-------S---------KGETVRVTANKEVILTAGAIAN-AQLLLLSG 230 (522)
Q Consensus 170 ~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~-------~---------~g~~~~v~A~k~VILaaGai~T-p~LLl~SG 230 (522)
..+++++.++.+++|..++++++++|++.. . .|++.++.++ .||+|.|..-. ..+|..+|
T Consensus 332 ~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D-~Vi~a~G~~p~~~~~~~~~g 408 (467)
T TIGR01318 332 EEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPAD-VVIMAFGFQPHAMPWLAGHG 408 (467)
T ss_pred hcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECC-EEEECCcCCCCccccccccC
Confidence 578999999999999765456788887742 1 2446789996 79999996544 23343333
No 140
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=47.23 E-value=31 Score=36.29 Aligned_cols=51 Identities=29% Similarity=0.411 Sum_probs=36.9
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQ 224 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~ 224 (522)
++.+++++.++.|++|..+ ++.+. |+.. +|+..++.++ .||+|.|..-+..
T Consensus 222 ~~~gi~i~~~~~v~~i~~~-~~~v~-v~~~--~g~~~~i~~D-~vi~a~G~~p~~~ 272 (461)
T TIGR01350 222 KKKGVKILTNTKVTAVEKN-DDQVV-YENK--GGETETLTGE-KVLVAVGRKPNTE 272 (461)
T ss_pred HHcCCEEEeCCEEEEEEEe-CCEEE-EEEe--CCcEEEEEeC-EEEEecCCcccCC
Confidence 4668999999999999776 44333 3322 4655678895 7999999776655
No 141
>KOG1298|consensus
Probab=47.11 E-value=24 Score=35.88 Aligned_cols=51 Identities=25% Similarity=0.417 Sum_probs=41.3
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~T 222 (522)
..+|+++.-++ |.+|+.+ .+.+.||+|++..|++.+..| ..-|+|-|-+..
T Consensus 159 slpNV~~eeGt-V~sLlee-~gvvkGV~yk~k~gee~~~~A-pLTvVCDGcfSn 209 (509)
T KOG1298|consen 159 SLPNVRLEEGT-VKSLLEE-EGVVKGVTYKNKEGEEVEAFA-PLTVVCDGCFSN 209 (509)
T ss_pred cCCCeEEeeee-HHHHHhc-cCeEEeEEEecCCCceEEEec-ceEEEecchhHH
Confidence 67899887664 6666666 569999999987788899999 589999997754
No 142
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=45.88 E-value=38 Score=36.96 Aligned_cols=64 Identities=11% Similarity=-0.003 Sum_probs=47.6
Q ss_pred CCCCcccccccccCCCCCCcccCCCCceeCcCCceEecc---cCCCCC-C-CchhHHHHHHHHHHHHHHHhhhc
Q psy14407 450 TTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADI---SVLPNA-I-ITQSDAISYMIGEKCADLVKTSY 518 (522)
Q Consensus 450 ~~~~H~~Gt~rMG~~~~~~~VVD~~~rv~g~~NL~V~Da---Sv~P~~-~-~~NPtlTi~Ala~r~Ad~i~~~~ 518 (522)
....+-+|+.++-.+ .-|+|.++++ ++|||.++. +++-.. + .++.....+..+..+++++++..
T Consensus 499 ~~~~~T~GGl~id~~---~qVld~~g~p--IpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~ 567 (574)
T PRK12842 499 MGDLGTFDGLRTDVT---GEVLDADGTP--IAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGVA 567 (574)
T ss_pred ccccccCCCcCCCCC---ceEECCCCCC--cCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhhh
Confidence 346677888888754 3899999997 899999994 344221 1 36777888889999999887654
No 143
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=44.84 E-value=67 Score=37.64 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=48.1
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHHhCCC
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 232 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~SGig 232 (522)
++.++++++++.|++|.-+ +++.+|++...+|...++.++ .|+++.|..-+..|+...|..
T Consensus 362 ~~~GV~i~~~~~v~~i~g~--~~v~~V~l~~~~g~~~~i~~D-~V~va~G~~Pnt~L~~~lg~~ 422 (985)
T TIGR01372 362 RELGIEVLTGHVVAATEGG--KRVSGVAVARNGGAGQRLEAD-ALAVSGGWTPVVHLFSQRGGK 422 (985)
T ss_pred HHcCCEEEcCCeEEEEecC--CcEEEEEEEecCCceEEEECC-EEEEcCCcCchhHHHHhcCCC
Confidence 5678999999999998654 467788877434566789996 799999999888888777653
No 144
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=44.77 E-value=41 Score=35.46 Aligned_cols=54 Identities=20% Similarity=0.273 Sum_probs=38.3
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 226 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LL 226 (522)
+..+++++++++|++|..+ ++. ..|++.+ +|+..++.++ .||+|.|..-...+|
T Consensus 224 ~~~gV~i~~~~~V~~i~~~-~~~-v~v~~~~-gg~~~~i~~D-~vi~a~G~~p~~~~l 277 (462)
T PRK06416 224 KKRGIKIKTGAKAKKVEQT-DDG-VTVTLED-GGKEETLEAD-YVLVAVGRRPNTENL 277 (462)
T ss_pred HHcCCEEEeCCEEEEEEEe-CCE-EEEEEEe-CCeeEEEEeC-EEEEeeCCccCCCCC
Confidence 4678999999999999776 332 2344444 4566778995 799999976555443
No 145
>PRK08244 hypothetical protein; Provisional
Probab=44.52 E-value=50 Score=35.13 Aligned_cols=57 Identities=18% Similarity=0.136 Sum_probs=38.3
Q ss_pred hhcccccCCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhh
Q psy14407 161 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 161 ~~l~~~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~T 222 (522)
..|...+ ...+++|+.+++|++|..+ +..+ .|.+.+.+| ..+++| +.||.|.|+-.+
T Consensus 104 ~~L~~~~-~~~gv~v~~~~~v~~i~~~-~~~v-~v~~~~~~g-~~~i~a-~~vVgADG~~S~ 160 (493)
T PRK08244 104 KVLEEHA-RSLGVEIFRGAEVLAVRQD-GDGV-EVVVRGPDG-LRTLTS-SYVVGADGAGSI 160 (493)
T ss_pred HHHHHHH-HHcCCeEEeCCEEEEEEEc-CCeE-EEEEEeCCc-cEEEEe-CEEEECCCCChH
Confidence 3444433 4568999999999999876 3333 355554345 467899 579999997433
No 146
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=44.37 E-value=46 Score=33.94 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=41.7
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHHhCCC
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 232 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~SGig 232 (522)
+..++++++++.|++|..+ ++. ..|++. +|+ ++.++ .||+|.|.--++.|+..+|+.
T Consensus 194 ~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~--~g~--~i~~D-~vI~a~G~~p~~~l~~~~gl~ 250 (377)
T PRK04965 194 TEMGVHLLLKSQLQGLEKT-DSG-IRATLD--SGR--SIEVD-AVIAAAGLRPNTALARRAGLA 250 (377)
T ss_pred HhCCCEEEECCeEEEEEcc-CCE-EEEEEc--CCc--EEECC-EEEECcCCCcchHHHHHCCCC
Confidence 5678999999999999775 332 234433 454 57885 799999987777788777764
No 147
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=44.07 E-value=41 Score=37.30 Aligned_cols=53 Identities=15% Similarity=0.271 Sum_probs=39.7
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEe-------c---------CCeEEEEEeCcEEEEcCcchhh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVN-------S---------KGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~-------~---------~g~~~~v~A~k~VILaaGai~T 222 (522)
...+++++.++.+++|..++++++++|++.. . .|+++++.++ .||+|.|....
T Consensus 517 ~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D-~Vi~AiG~~p~ 585 (654)
T PRK12769 517 REEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPAD-AVIMAFGFNPH 585 (654)
T ss_pred HHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECC-EEEECccCCCC
Confidence 3568999999999999765457888988742 1 2456789996 79999995543
No 148
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=43.49 E-value=32 Score=34.82 Aligned_cols=49 Identities=16% Similarity=0.104 Sum_probs=30.7
Q ss_pred cccCCCCceeCcCCceEec-ccCCCCCCCchhHHHHHHHHHHHHHHHhhh
Q psy14407 469 AVVTPDLKVKGIKGLRVAD-ISVLPNAIITQSDAISYMIGEKCADLVKTS 517 (522)
Q Consensus 469 ~VVD~~~rv~g~~NL~V~D-aSv~P~~~~~NPtlTi~Ala~r~Ad~i~~~ 517 (522)
=+||+.+|+.+++|+|+++ ++.++..+.......++.-|..+|+.|.+.
T Consensus 260 i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~ 309 (364)
T TIGR03169 260 LRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRAS 309 (364)
T ss_pred EEECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHH
Confidence 4788899998999999986 444554333222233444556666666543
No 149
>KOG2311|consensus
Probab=43.20 E-value=18 Score=37.64 Aligned_cols=54 Identities=30% Similarity=0.428 Sum_probs=40.7
Q ss_pred CCCCeEEEcCcEEEEEEec-CC--CeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIIN-DQ--NVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL 227 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~-~~--~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl 227 (522)
.++|++|+.++.+.=|+.+ +. .++.||...+ |. .|+| +.|||..|++-+.+|-.
T Consensus 136 st~nL~ire~~V~dliv~~~~~~~~~~~gV~l~d--gt--~v~a-~~VilTTGTFL~~~I~i 192 (679)
T KOG2311|consen 136 STPNLEIREGAVADLIVEDPDDGHCVVSGVVLVD--GT--VVYA-ESVILTTGTFLRGQINI 192 (679)
T ss_pred cCCcchhhhhhhhheeeccCCCCceEEEEEEEec--Cc--Eecc-ceEEEeeccceeeEEee
Confidence 6889999988877666665 22 3688888876 65 5888 47999999987776643
No 150
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=43.18 E-value=15 Score=39.08 Aligned_cols=53 Identities=26% Similarity=0.476 Sum_probs=38.6
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL 227 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl 227 (522)
..+|++|+-++ |+.|+.+++.+|.||...+ |. .+.| |.|||++|++-.-+|..
T Consensus 112 ~~~NL~l~q~~-v~dli~e~~~~v~GV~t~~--G~--~~~a-~aVVlTTGTFL~G~I~i 164 (621)
T COG0445 112 NQPNLHLLQGE-VEDLIVEEGQRVVGVVTAD--GP--EFHA-KAVVLTTGTFLRGKIHI 164 (621)
T ss_pred cCCCceehHhh-hHHHhhcCCCeEEEEEeCC--CC--eeec-CEEEEeecccccceEEe
Confidence 68899999775 5666665355799998764 55 5788 57999999986555543
No 151
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=42.90 E-value=74 Score=33.79 Aligned_cols=35 Identities=20% Similarity=0.076 Sum_probs=24.8
Q ss_pred CcCCceEecccCCCCCCCchhHHHHHHHHHHHHHHHhhh
Q psy14407 479 GIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTS 517 (522)
Q Consensus 479 g~~NL~V~DaSv~P~~~~~NPtlTi~Ala~r~Ad~i~~~ 517 (522)
.++|||.|++|++|. +++. .++.=|..+|+.|+++
T Consensus 457 ~i~gLyl~G~~~~pG-~Gv~---g~~~sg~~~a~~i~~~ 491 (492)
T TIGR02733 457 PVKGLWLCGDSIHPG-EGTA---GVSYSALMVVRQILAS 491 (492)
T ss_pred CCCCeEEecCccCCC-CcHH---HHHHHHHHHHHHHhhc
Confidence 799999999999994 3442 2344566777777653
No 152
>KOG2853|consensus
Probab=42.67 E-value=54 Score=32.84 Aligned_cols=41 Identities=27% Similarity=0.238 Sum_probs=32.2
Q ss_pred eEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHHhCCCC
Q psy14407 191 VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP 233 (522)
Q Consensus 191 ~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~SGig~ 233 (522)
++.+|.++-.++..+++++ ..+|+|||| .|-++--.-|||.
T Consensus 291 ~i~~vvV~m~d~~~r~vk~-al~V~aAGa-~s~QvArlAgIG~ 331 (509)
T KOG2853|consen 291 RISGVVVRMNDALARPVKF-ALCVNAAGA-WSGQVARLAGIGK 331 (509)
T ss_pred ccceeEEecCchhcCceeE-EEEEeccCc-cHHHHHHHhccCC
Confidence 5667766644666789999 589999998 7888888888884
No 153
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=42.49 E-value=47 Score=34.06 Aligned_cols=56 Identities=21% Similarity=0.149 Sum_probs=39.0
Q ss_pred hhcccccCCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhh
Q psy14407 161 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANA 223 (522)
Q Consensus 161 ~~l~~~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp 223 (522)
.-|...+.+.+|++++.+++|+.+..+ +..+. |.+.. +|+ +++| +-||-|=| ++|.
T Consensus 108 ~~L~~~~~~~~~v~~~~~~~v~~~~~~-~~~v~-v~l~~-dG~--~~~a-~llVgADG-~~S~ 163 (387)
T COG0654 108 NALLEAARALPNVTLRFGAEVEAVEQD-GDGVT-VTLSF-DGE--TLDA-DLLVGADG-ANSA 163 (387)
T ss_pred HHHHHHHhhCCCcEEEcCceEEEEEEc-CCceE-EEEcC-CCc--EEec-CEEEECCC-CchH
Confidence 334333325788999999999999998 55566 77764 577 8999 45555555 5654
No 154
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=42.48 E-value=46 Score=36.80 Aligned_cols=51 Identities=14% Similarity=0.196 Sum_probs=38.7
Q ss_pred CCCeEEEcCcEEEEEEecCCCeEEEEEEEec----------------CCeEEEEEeCcEEEEcCcchh
Q psy14407 170 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS----------------KGETVRVTANKEVILTAGAIA 221 (522)
Q Consensus 170 ~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~----------------~g~~~~v~A~k~VILaaGai~ 221 (522)
..+++++.++.+++|..++++++++|++... .|+++++.++ .||+|.|...
T Consensus 501 ~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD-~Vi~AiG~~p 567 (639)
T PRK12809 501 EEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPAD-VLIMAFGFQA 567 (639)
T ss_pred HcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECC-EEEECcCCCC
Confidence 5689999999999997664568888876321 2456789996 7999999554
No 155
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=41.68 E-value=28 Score=26.45 Aligned_cols=35 Identities=14% Similarity=0.214 Sum_probs=25.7
Q ss_pred hcccccCCCCCeEEEcCcEEEEEEecCCCeEEEEEEEe
Q psy14407 162 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVN 199 (522)
Q Consensus 162 ~l~~~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~ 199 (522)
++...+ ++.|+++++++.|++|..++.+ ++ |++.|
T Consensus 45 ~~~~~l-~~~gV~v~~~~~v~~i~~~~~~-~~-V~~~~ 79 (80)
T PF00070_consen 45 ILEEYL-RKRGVEVHTNTKVKEIEKDGDG-VE-VTLED 79 (80)
T ss_dssp HHHHHH-HHTTEEEEESEEEEEEEEETTS-EE-EEEET
T ss_pred HHHHHH-HHCCCEEEeCCEEEEEEEeCCE-EE-EEEec
Confidence 333434 5679999999999999988334 66 87765
No 156
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=41.63 E-value=47 Score=36.28 Aligned_cols=63 Identities=13% Similarity=0.019 Sum_probs=47.4
Q ss_pred CCCcccccccccCCCCCCcccCCCCceeCcCCceEecc---cCCCC--CCCchhHHHHHHHHHHHHHHHhhhc
Q psy14407 451 TTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADI---SVLPN--AIITQSDAISYMIGEKCADLVKTSY 518 (522)
Q Consensus 451 ~~~H~~Gt~rMG~~~~~~~VVD~~~rv~g~~NL~V~Da---Sv~P~--~~~~NPtlTi~Ala~r~Ad~i~~~~ 518 (522)
...+-+|+.++-.+ .-|+|.++++ ++|||.++. +++-. ..+++.....+..+..+++.+++..
T Consensus 504 ~~~~T~GGl~id~~---~qVld~~g~p--IpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~ 571 (581)
T PRK06134 504 GCLGTFAGLKTDAD---ARVLDQAGQP--IPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAGAS 571 (581)
T ss_pred cccccCCCccCCCC---CceECCCCCC--cCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhhcC
Confidence 45677888888754 3899999986 899999984 44421 1246677788889999999887754
No 157
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=41.48 E-value=51 Score=33.99 Aligned_cols=57 Identities=25% Similarity=0.369 Sum_probs=37.2
Q ss_pred hhhcccccCCCCCeEEEcCcEEEEEEec-CCCeEEEEEEEecC-----CeEEEEEeCcEEEEcCcc
Q psy14407 160 DAYLTPIAGKRTNLYVLKRSKVTKVIIN-DQNVATGVEYVNSK-----GETVRVTANKEVILTAGA 219 (522)
Q Consensus 160 ~~~l~~~~~~~~n~~v~~~~~V~~I~~~-~~~~a~gV~~~~~~-----g~~~~v~A~k~VILaaGa 219 (522)
..+|...+ ...+++++.++ |++|... +.+...+|++...+ |+..+++| +.||.|.|+
T Consensus 96 d~~L~~~a-~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a-~~VIgADG~ 158 (398)
T TIGR02028 96 DSFLRRRA-ADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEV-DAVIGADGA 158 (398)
T ss_pred HHHHHHHH-HHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEe-CEEEECCCc
Confidence 34554433 46789998885 7777553 23445667765422 66678999 578888885
No 158
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=40.99 E-value=45 Score=38.22 Aligned_cols=63 Identities=10% Similarity=0.248 Sum_probs=45.2
Q ss_pred cccccCCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHHhCC
Q psy14407 163 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 231 (522)
Q Consensus 163 l~~~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~SGi 231 (522)
|...+ +..++++++++.|++|..++...+..|.+. +|+ ++.++ .||+|+|.--+..|+..+|+
T Consensus 193 l~~~L-~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~--dG~--~i~~D-~Vv~A~G~rPn~~L~~~~Gl 255 (847)
T PRK14989 193 LRRKI-ESMGVRVHTSKNTLEIVQEGVEARKTMRFA--DGS--ELEVD-FIVFSTGIRPQDKLATQCGL 255 (847)
T ss_pred HHHHH-HHCCCEEEcCCeEEEEEecCCCceEEEEEC--CCC--EEEcC-EEEECCCcccCchHHhhcCc
Confidence 33334 577899999999999976522344555544 465 57885 79999998888887777776
No 159
>PRK11445 putative oxidoreductase; Provisional
Probab=40.94 E-value=88 Score=31.55 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=36.4
Q ss_pred CCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhH
Q psy14407 170 RTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQ 224 (522)
Q Consensus 170 ~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~ 224 (522)
..+++++.++.|++|..+ ++. ..|.+.. +|+..++++ +.||.|.|+-...+
T Consensus 110 ~~gv~v~~~~~v~~i~~~-~~~-~~v~~~~-~g~~~~i~a-~~vV~AdG~~S~vr 160 (351)
T PRK11445 110 PASVEVYHNSLCRKIWRE-DDG-YHVIFRA-DGWEQHITA-RYLVGADGANSMVR 160 (351)
T ss_pred hcCCEEEcCCEEEEEEEc-CCE-EEEEEec-CCcEEEEEe-CEEEECCCCCcHHh
Confidence 467999999999999876 332 3355544 676668999 57999999754443
No 160
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=40.92 E-value=35 Score=34.47 Aligned_cols=44 Identities=25% Similarity=0.310 Sum_probs=30.4
Q ss_pred CCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHH
Q psy14407 170 RTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 226 (522)
Q Consensus 170 ~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LL 226 (522)
+.+++++.+++|++|.. + .|+.. +|. ++|+ .||+|+|+ .+..||
T Consensus 158 ~~Gv~i~~~t~V~~i~~--~----~v~t~--~g~---i~a~-~VV~A~G~-~s~~l~ 201 (365)
T TIGR03364 158 QHGVEFHWNTAVTSVET--G----TVRTS--RGD---VHAD-QVFVCPGA-DFETLF 201 (365)
T ss_pred cCCCEEEeCCeEEEEec--C----eEEeC--CCc---EEeC-EEEECCCC-ChhhhC
Confidence 35899999999999843 2 34332 353 5785 79999998 455554
No 161
>PRK06370 mercuric reductase; Validated
Probab=40.43 E-value=50 Score=34.79 Aligned_cols=52 Identities=15% Similarity=0.274 Sum_probs=36.3
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQ 224 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~ 224 (522)
+..+++++++++|++|..+ ++. ..|++.. ++...++.++ .||+|.|..-...
T Consensus 223 ~~~GV~i~~~~~V~~i~~~-~~~-~~v~~~~-~~~~~~i~~D-~Vi~A~G~~pn~~ 274 (463)
T PRK06370 223 EREGIDVRLNAECIRVERD-GDG-IAVGLDC-NGGAPEITGS-HILVAVGRVPNTD 274 (463)
T ss_pred HhCCCEEEeCCEEEEEEEc-CCE-EEEEEEe-CCCceEEEeC-EEEECcCCCcCCC
Confidence 5678999999999999775 322 2344443 2334568895 7999999765554
No 162
>PRK07045 putative monooxygenase; Reviewed
Probab=40.11 E-value=64 Score=32.95 Aligned_cols=51 Identities=18% Similarity=0.237 Sum_probs=34.3
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQ 224 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~ 224 (522)
..+|++++.+++|+.|..++++.++.|.+. +|+ ++++ +.||-|-|+-...|
T Consensus 118 ~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~--~g~--~~~~-~~vIgADG~~S~vR 168 (388)
T PRK07045 118 GLPNVRLRFETSIERIERDADGTVTSVTLS--DGE--RVAP-TVLVGADGARSMIR 168 (388)
T ss_pred cCCCeeEEeCCEEEEEEECCCCcEEEEEeC--CCC--EEEC-CEEEECCCCChHHH
Confidence 467899999999999988734445556553 464 5788 45666666543333
No 163
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=39.88 E-value=59 Score=31.30 Aligned_cols=46 Identities=24% Similarity=0.107 Sum_probs=32.3
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcch
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAI 220 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai 220 (522)
.+.+++++.+++|++|..+ ++.+ .|.+.+ ...++++ +.||+|.|.-
T Consensus 102 ~~~gv~~~~~~~v~~~~~~-~~~~-~~~~~~---~~~~~~a-~~vv~a~G~~ 147 (295)
T TIGR02032 102 QEAGAELRLGTTVLDVEIH-DDRV-VVIVRG---GEGTVTA-KIVIGADGSR 147 (295)
T ss_pred HHcCCEEEeCcEEeeEEEe-CCEE-EEEEcC---ccEEEEe-CEEEECCCcc
Confidence 4678999999999999887 3332 232222 2346889 5799999964
No 164
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=39.71 E-value=43 Score=35.93 Aligned_cols=63 Identities=17% Similarity=0.072 Sum_probs=47.9
Q ss_pred CCCCcccccccccCCCCCCcccCCCCceeCcCCceEeccc---CC-CCCC-CchhHHHHHHHHHHHHHHHhhh
Q psy14407 450 TTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADIS---VL-PNAI-ITQSDAISYMIGEKCADLVKTS 517 (522)
Q Consensus 450 ~~~~H~~Gt~rMG~~~~~~~VVD~~~rv~g~~NL~V~DaS---v~-P~~~-~~NPtlTi~Ala~r~Ad~i~~~ 517 (522)
....|-+|++++-.+ .-|+|.++++ ++|||.++.- ++ ..-+ ++|.....+..+..+++++.++
T Consensus 444 p~~~~T~GGl~in~~---~qVl~~~g~p--IpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~~ 511 (513)
T PRK12837 444 VSDLGTKGGLRTDTA---ARVLDTDGRP--IPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMAGR 511 (513)
T ss_pred cccceeCCCceECCC---ceEECCCCCE--eCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHhcC
Confidence 345678999998854 3899999998 8999999864 34 2222 4777888889999999988654
No 165
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=39.61 E-value=49 Score=36.11 Aligned_cols=63 Identities=11% Similarity=0.041 Sum_probs=43.6
Q ss_pred CCCcccccccccCCCCCCcccCCCCceeCcCCceEec---ccCCCCC--CCchhHHHHHHHHHHHHHHHhhhc
Q psy14407 451 TTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVAD---ISVLPNA--IITQSDAISYMIGEKCADLVKTSY 518 (522)
Q Consensus 451 ~~~H~~Gt~rMG~~~~~~~VVD~~~rv~g~~NL~V~D---aSv~P~~--~~~NPtlTi~Ala~r~Ad~i~~~~ 518 (522)
...|-+|+.++-.+ .-|+|.++++ ++|||.++ ++++-.. .+++.....+..+..+++++.+..
T Consensus 505 ~~~~T~GGl~in~~---~qVld~dg~p--IpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~ 572 (578)
T PRK12843 505 GDIGAATGLVTDAS---ARVLNADGQP--ISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKRT 572 (578)
T ss_pred CccccCCCccCCCC---ceEECCCCCC--cCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHhh
Confidence 45677788887754 3899999986 89999997 3344221 235556667888888888776654
No 166
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=38.89 E-value=25 Score=36.22 Aligned_cols=47 Identities=26% Similarity=0.305 Sum_probs=32.5
Q ss_pred cccCCCCceeCcCCceEe-cccCCCCCCCchhHHHHH----HHHHHHHHHHhhhc
Q psy14407 469 AVVTPDLKVKGIKGLRVA-DISVLPNAIITQSDAISY----MIGEKCADLVKTSY 518 (522)
Q Consensus 469 ~VVD~~~rv~g~~NL~V~-DaSv~P~~~~~NPtlTi~----Ala~r~Ad~i~~~~ 518 (522)
=+||+++++-|++|+||+ |++.++.. +|.-++. .-|+.+|+.|++++
T Consensus 280 l~V~~~L~~~~~~~IFa~GD~A~~~~~---~p~P~tAQ~A~Qqg~~~a~ni~~~l 331 (405)
T COG1252 280 LVVNPTLQVPGHPDIFAAGDCAAVIDP---RPVPPTAQAAHQQGEYAAKNIKARL 331 (405)
T ss_pred EEeCCCcccCCCCCeEEEeccccCCCC---CCCCChhHHHHHHHHHHHHHHHHHh
Confidence 589999999999999998 56656654 3333333 44556666666655
No 167
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=38.57 E-value=70 Score=32.29 Aligned_cols=60 Identities=20% Similarity=0.276 Sum_probs=41.8
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec----------------CCeEEEEEeCcEEEEcCcchhhhHHHHH-hCC
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS----------------KGETVRVTANKEVILTAGAIANAQLLLL-SGI 231 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~----------------~g~~~~v~A~k~VILaaGai~Tp~LLl~-SGi 231 (522)
+..++++++++.|+++.-+ +++.+|++.+. +|+..++.++ .||+|.|..-++.|+.. +|+
T Consensus 221 ~~~gi~i~~~~~v~~i~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D-~vi~a~G~~p~~~l~~~~~g~ 297 (352)
T PRK12770 221 IARGVEFLELVTPVRIIGE--GRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEAD-TVVFAIGEIPTPPFAKECLGI 297 (352)
T ss_pred HHcCCEEeeccCceeeecC--CcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECC-EEEECcccCCCchhhhcccCc
Confidence 4668999999999987643 34666665421 3556789995 79999998776655443 443
No 168
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=38.44 E-value=43 Score=35.32 Aligned_cols=48 Identities=21% Similarity=0.242 Sum_probs=32.8
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 226 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LL 226 (522)
.+.+++|+.++.|++|... + ...|+ ..+| +++|+ .||+|+|+. |..|+
T Consensus 194 ~~~Gv~i~~~t~V~~i~~~--~-~~~v~--t~~g---~v~A~-~VV~Atga~-s~~l~ 241 (460)
T TIGR03329 194 LELGVEIHENTPMTGLEEG--Q-PAVVR--TPDG---QVTAD-KVVLALNAW-MASHF 241 (460)
T ss_pred HHcCCEEECCCeEEEEeeC--C-ceEEE--eCCc---EEECC-EEEEccccc-ccccC
Confidence 4678999999999998642 2 22333 3244 48895 799999985 44443
No 169
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=38.31 E-value=64 Score=31.07 Aligned_cols=51 Identities=20% Similarity=0.155 Sum_probs=42.1
Q ss_pred CCcccCCCCceeCcCCceEecccCCC--CCCCchhHHHHHHHH-HHHHHHHhhhcC
Q psy14407 467 PNAVVTPDLKVKGIKGLRVADISVLP--NAIITQSDAISYMIG-EKCADLVKTSYN 519 (522)
Q Consensus 467 ~~~VVD~~~rv~g~~NL~V~DaSv~P--~~~~~NPtlTi~Ala-~r~Ad~i~~~~~ 519 (522)
+..||+...+| ++||||++-++-- -.|.--|++-.|.++ +|+|+.|+++++
T Consensus 202 e~~v~~~t~~~--~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~ 255 (257)
T PRK04176 202 EKLVVENTGEV--YPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLK 255 (257)
T ss_pred HHHHHhcCCeE--cCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhh
Confidence 34899999999 8999999977733 356678999988875 699999999875
No 170
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=38.13 E-value=58 Score=35.63 Aligned_cols=64 Identities=17% Similarity=0.127 Sum_probs=45.2
Q ss_pred CCCcccccccccCCCCCCcccCCCCceeCcCCceEec---ccCCCCC-C-CchhHHHHHHHHHHHHHHHhhhcC
Q psy14407 451 TTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVAD---ISVLPNA-I-ITQSDAISYMIGEKCADLVKTSYN 519 (522)
Q Consensus 451 ~~~H~~Gt~rMG~~~~~~~VVD~~~rv~g~~NL~V~D---aSv~P~~-~-~~NPtlTi~Ala~r~Ad~i~~~~~ 519 (522)
...+-+|+.+.-.+ .-|+|.++++ ++|||.++ ++++-.. + +++.....+..+..|++++++...
T Consensus 503 ~~~~T~GGl~in~~---~qVLd~~g~p--IpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~~~ 571 (584)
T PRK12835 503 GDLGTSGGLRTDEH---ARVLREDDSV--IPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAVVA 571 (584)
T ss_pred cccccCcCccCCCC---ceEECCCCCC--ccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHhhh
Confidence 45667888887744 3899999987 89999998 4455322 1 245566678888888888876653
No 171
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=38.13 E-value=75 Score=32.54 Aligned_cols=50 Identities=14% Similarity=0.059 Sum_probs=34.1
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~T 222 (522)
...+++++.+++|++|...++. ...|++.. +|++.++++ +.||-|-| ++|
T Consensus 114 ~~~gv~v~~~~~v~~i~~~~~~-~~~V~~~~-~G~~~~i~a-d~vVgADG-~~S 163 (392)
T PRK08243 114 LAAGGPIRFEASDVALHDFDSD-RPYVTYEK-DGEEHRLDC-DFIAGCDG-FHG 163 (392)
T ss_pred HhCCCeEEEeeeEEEEEecCCC-ceEEEEEc-CCeEEEEEe-CEEEECCC-CCC
Confidence 3568999999999998762122 34566654 688889999 45555555 455
No 172
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=37.89 E-value=71 Score=32.40 Aligned_cols=43 Identities=28% Similarity=0.373 Sum_probs=30.7
Q ss_pred CCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcc
Q psy14407 170 RTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGA 219 (522)
Q Consensus 170 ~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGa 219 (522)
.+|++++.+++|++|..+ ++.+ .|.+. +|. +++| +.||.|.|+
T Consensus 118 ~~gv~~~~~~~v~~i~~~-~~~~-~v~~~--~g~--~~~a-d~vV~AdG~ 160 (382)
T TIGR01984 118 LTNIQLYCPARYKEIIRN-QDYV-RVTLD--NGQ--QLRA-KLLIAADGA 160 (382)
T ss_pred CCCcEEEcCCeEEEEEEc-CCeE-EEEEC--CCC--EEEe-eEEEEecCC
Confidence 369999999999999876 3322 24332 454 5888 579999994
No 173
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=37.61 E-value=38 Score=34.94 Aligned_cols=53 Identities=30% Similarity=0.419 Sum_probs=39.4
Q ss_pred hcccccCCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHH
Q psy14407 162 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQL 225 (522)
Q Consensus 162 ~l~~~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~L 225 (522)
|....+ ++.|++|++++.|++|..+ +|.+.+ |.. +|.+ ..||-+||.=.+|-+
T Consensus 214 ~a~~~L-~~~GV~v~l~~~Vt~v~~~------~v~~~~--g~~-~I~~-~tvvWaaGv~a~~~~ 266 (405)
T COG1252 214 YAERAL-EKLGVEVLLGTPVTEVTPD------GVTLKD--GEE-EIPA-DTVVWAAGVRASPLL 266 (405)
T ss_pred HHHHHH-HHCCCEEEcCCceEEECCC------cEEEcc--CCe-eEec-CEEEEcCCCcCChhh
Confidence 444455 7889999999999999765 455554 443 8999 589999997666633
No 174
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=37.47 E-value=57 Score=33.38 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=35.7
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHHhCC
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 231 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~SGi 231 (522)
...+++++.+++|+++..+ ++.+. |++. +|+ ++++ +.||.|.|. .| .+-...|+
T Consensus 124 ~~~gv~i~~~~~v~~i~~~-~~~v~-v~~~--~g~--~~~a-~~vV~AdG~-~S-~vr~~~g~ 177 (392)
T PRK08773 124 HAAGVQLHCPARVVALEQD-ADRVR-LRLD--DGR--RLEA-ALAIAADGA-AS-TLRELAGL 177 (392)
T ss_pred HhCCCEEEcCCeEEEEEec-CCeEE-EEEC--CCC--EEEe-CEEEEecCC-Cc-hHHHhhcC
Confidence 4568999999999999876 44332 4332 454 5788 578888886 44 34433343
No 175
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=37.37 E-value=59 Score=29.33 Aligned_cols=48 Identities=10% Similarity=0.221 Sum_probs=35.0
Q ss_pred CCCeEEEcCcEEEEEEecCCCeE----EEEEEEecCCeEEEEEeCcEEEEcCcch
Q psy14407 170 RTNLYVLKRSKVTKVIINDQNVA----TGVEYVNSKGETVRVTANKEVILTAGAI 220 (522)
Q Consensus 170 ~~n~~v~~~~~V~~I~~~~~~~a----~gV~~~~~~g~~~~v~A~k~VILaaGai 220 (522)
..+++++.+++|.+|... .+++ ..+.... .+...++.++ .||||.|+-
T Consensus 70 ~~~v~~~~~~~v~~i~~~-~~~~~~~~~~~~~~~-~~~~~~~~~d-~lviAtG~~ 121 (201)
T PF07992_consen 70 NRGVEIRLNAKVVSIDPE-SKRVVCPAVTIQVVE-TGDGREIKYD-YLVIATGSR 121 (201)
T ss_dssp HHTHEEEHHHTEEEEEES-TTEEEETCEEEEEEE-TTTEEEEEEE-EEEEESTEE
T ss_pred cceEEEeecccccccccc-ccccccCcccceeec-cCCceEecCC-eeeecCccc
Confidence 578999999999999887 4432 2232323 6777889994 799999953
No 176
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=37.35 E-value=74 Score=33.50 Aligned_cols=56 Identities=23% Similarity=0.323 Sum_probs=40.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec---------------CCeEEEEEeCcEEEEcCcchhhhHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS---------------KGETVRVTANKEVILTAGAIANAQLL 226 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~---------------~g~~~~v~A~k~VILaaGai~Tp~LL 226 (522)
...++++++++.|++|.-+ ++++.+|++... +|...++.++ .||+|.|..-...|+
T Consensus 322 ~~~GV~i~~~~~v~~i~~~-~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~l~ 392 (457)
T PRK11749 322 KEEGVEFEWLAAPVEILGD-EGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPAD-LVIKAIGQTPNPLIL 392 (457)
T ss_pred HHCCCEEEecCCcEEEEec-CCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECC-EEEECccCCCCchhh
Confidence 3678999999999998765 444567766421 2456789995 799999965554444
No 177
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=37.21 E-value=61 Score=33.85 Aligned_cols=56 Identities=20% Similarity=0.249 Sum_probs=40.2
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHHhCCC
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 232 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~SGig 232 (522)
+..+++++.+++|++|..+ +++..|.. ++. ++.++ .||+|.|..-+..+|..+|+.
T Consensus 202 ~~~gI~v~~~~~v~~i~~~--~~~~~v~~---~~~--~i~~d-~vi~a~G~~p~~~~l~~~gl~ 257 (444)
T PRK09564 202 RENGVELHLNEFVKSLIGE--DKVEGVVT---DKG--EYEAD-VVIVATGVKPNTEFLEDTGLK 257 (444)
T ss_pred HHCCCEEEcCCEEEEEecC--CcEEEEEe---CCC--EEEcC-EEEECcCCCcCHHHHHhcCcc
Confidence 5678999999999999543 33444432 233 48885 799999987777788777763
No 178
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=36.71 E-value=73 Score=33.46 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=34.6
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcch
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAI 220 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai 220 (522)
+..+.+++.++.|++|..++++++.+|+..+ |+ +++| +.||.....+
T Consensus 243 a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~--Ge--~i~a-~~VV~~~s~~ 289 (443)
T PTZ00363 243 AIYGGTYMLNTPVDEVVFDENGKVCGVKSEG--GE--VAKC-KLVICDPSYF 289 (443)
T ss_pred HHcCcEEEcCCeEEEEEEcCCCeEEEEEECC--Cc--EEEC-CEEEECcccc
Confidence 4567899999999999988456788887654 65 4678 4677765543
No 179
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=36.68 E-value=50 Score=34.82 Aligned_cols=52 Identities=17% Similarity=0.278 Sum_probs=36.3
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQ 224 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~ 224 (522)
+..+++++++++|++|..+ ++ ...|++.. ++...++.++ .||+|.|..-...
T Consensus 218 ~~~gV~i~~~~~V~~i~~~-~~-~~~v~~~~-~~~~~~i~~D-~ViiA~G~~p~~~ 269 (463)
T TIGR02053 218 AEEGIEVVTSAQVKAVSVR-GG-GKIITVEK-PGGQGEVEAD-ELLVATGRRPNTD 269 (463)
T ss_pred HHcCCEEEcCcEEEEEEEc-CC-EEEEEEEe-CCCceEEEeC-EEEEeECCCcCCC
Confidence 5678999999999999775 33 23455443 3344678895 7999999654443
No 180
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=36.01 E-value=59 Score=35.30 Aligned_cols=63 Identities=21% Similarity=0.129 Sum_probs=46.4
Q ss_pred CCCcccccccccCCCCCCcccCCCCceeCcCCceEecc---cCCCC-CCC-chhHHHHHHHHHHHHHHHhhhc
Q psy14407 451 TTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADI---SVLPN-AII-TQSDAISYMIGEKCADLVKTSY 518 (522)
Q Consensus 451 ~~~H~~Gt~rMG~~~~~~~VVD~~~rv~g~~NL~V~Da---Sv~P~-~~~-~NPtlTi~Ala~r~Ad~i~~~~ 518 (522)
...+-+|+.++-.+ .-|+|.++++ ++|||.++. +++-. -++ ++.....+..+..+++++++..
T Consensus 483 ~~~~T~GGl~in~~---~qVld~~g~p--IpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~~ 550 (557)
T PRK12844 483 GDVGTSGGLLTDEH---ARVLREDGSV--IPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGAR 550 (557)
T ss_pred cccEECCCccCCCC---ceEECCCCCC--ccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhcc
Confidence 45677888887754 3899999986 899999984 34432 223 6777888888999998887654
No 181
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=35.82 E-value=72 Score=32.31 Aligned_cols=55 Identities=15% Similarity=0.209 Sum_probs=35.4
Q ss_pred hhhhhcccccCCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcch
Q psy14407 158 AADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAI 220 (522)
Q Consensus 158 ~~~~~l~~~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai 220 (522)
....++..+. +.+|++|+.+++|++|..+ ++.+ .|+.. +|+ ++.+ +.||.|.|+-
T Consensus 108 l~~~L~~~~~-~~~~~~v~~~~~v~~i~~~-~~~~-~v~~~--~g~--~~~~-~~vi~adG~~ 162 (385)
T TIGR01988 108 LQQALWERLQ-EYPNVTLLCPARVVELPRH-SDHV-ELTLD--DGQ--QLRA-RLLVGADGAN 162 (385)
T ss_pred HHHHHHHHHH-hCCCcEEecCCeEEEEEec-CCee-EEEEC--CCC--EEEe-eEEEEeCCCC
Confidence 3334443344 5566999999999999876 4433 24333 465 4788 4788888863
No 182
>KOG2820|consensus
Probab=35.80 E-value=63 Score=32.35 Aligned_cols=60 Identities=25% Similarity=0.264 Sum_probs=42.0
Q ss_pred cccccCCCCCeEEEcCcEEEEEEec-CCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHHh
Q psy14407 163 LTPIAGKRTNLYVLKRSKVTKVIIN-DQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLS 229 (522)
Q Consensus 163 l~~~~~~~~n~~v~~~~~V~~I~~~-~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~S 229 (522)
+...+ ...++.++.+.+|+.+.+. +.+..++|+..+ |. .+.| |.+|+++|+ -+.+||-.|
T Consensus 159 ~~~~~-~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~--gs--~Y~a-kkiI~t~Ga-Wi~klL~~~ 219 (399)
T KOG2820|consen 159 LQDKA-RELGVIFRDGEKVKFIKFVDEEGNHVSVQTTD--GS--IYHA-KKIIFTVGA-WINKLLPTS 219 (399)
T ss_pred HHHHH-HHcCeEEecCcceeeEeeccCCCceeEEEecc--CC--eeec-ceEEEEecH-HHHhhcCcc
Confidence 43444 5788999999999999987 344455555443 54 3677 569999998 566777544
No 183
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=35.66 E-value=56 Score=34.31 Aligned_cols=55 Identities=15% Similarity=0.148 Sum_probs=37.1
Q ss_pred CCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHH
Q psy14407 170 RTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL 227 (522)
Q Consensus 170 ~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl 227 (522)
.-..+|..++.|+.+.+++.+..--|.+.+ |...++.++ .||+|+|.++.|.+=-
T Consensus 96 ~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~--~~~~~~~a~-~vV~ATG~~~~P~iP~ 150 (443)
T COG2072 96 GLRFQIRFNTRVEVADWDEDTKRWTVTTSD--GGTGELTAD-FVVVATGHLSEPYIPD 150 (443)
T ss_pred CceeEEEcccceEEEEecCCCCeEEEEEcC--CCeeeEecC-EEEEeecCCCCCCCCC
Confidence 344577777777778887444455566554 333338895 7999999988886543
No 184
>PRK07121 hypothetical protein; Validated
Probab=35.63 E-value=50 Score=35.13 Aligned_cols=63 Identities=17% Similarity=0.163 Sum_probs=44.1
Q ss_pred CCcccccccccCCCCCCcccCCCCceeCcCCceEecc---cCCCC-CCCchhHHHHHHHHHHHHHHHhhhc
Q psy14407 452 TSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADI---SVLPN-AIITQSDAISYMIGEKCADLVKTSY 518 (522)
Q Consensus 452 ~~H~~Gt~rMG~~~~~~~VVD~~~rv~g~~NL~V~Da---Sv~P~-~~~~NPtlTi~Ala~r~Ad~i~~~~ 518 (522)
..+-+|+.+.-.+ ..-|+|.++++ ++|||.++. +++-. -+++|.....+..+..+++.+.++-
T Consensus 425 ~~~T~GGl~id~~--~~qVld~~g~p--I~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~~~ 491 (492)
T PRK07121 425 PGFTLGGLRVDED--TGEVLRADGAP--IPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAARA 491 (492)
T ss_pred ceeeccCeeECCC--cceEECCCCCC--cCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHhhc
Confidence 4555677666532 02677777775 899999984 44422 2367888888999999999887653
No 185
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=35.05 E-value=73 Score=33.33 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=34.5
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcch
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAI 220 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai 220 (522)
++.|++++.+++|++|..+ +. .|.+.+. +++..++..+ .+|||.|+-
T Consensus 69 ~~~~i~v~~~~~V~~Id~~-~~---~v~~~~~~~~~~~~~~yd-~lviAtGs~ 116 (438)
T PRK13512 69 DRKQITVKTYHEVIAINDE-RQ---TVTVLNRKTNEQFEESYD-KLILSPGAS 116 (438)
T ss_pred HhCCCEEEeCCEEEEEECC-CC---EEEEEECCCCcEEeeecC-EEEECCCCC
Confidence 4578999999999999876 43 3445442 3455677885 699999975
No 186
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=34.87 E-value=93 Score=33.81 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=39.3
Q ss_pred CCCeEEEcCcEEEEEEecCCCeEEEEEEEe-------c-------CCeEEEEEeCcEEEEcCcchhhhHHHH
Q psy14407 170 RTNLYVLKRSKVTKVIINDQNVATGVEYVN-------S-------KGETVRVTANKEVILTAGAIANAQLLL 227 (522)
Q Consensus 170 ~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~-------~-------~g~~~~v~A~k~VILaaGai~Tp~LLl 227 (522)
..+++++.++.+++|.-++++++ +|++.. . .|++.++.++ .||+|.|..-.+.+|.
T Consensus 317 ~~GVki~~~~~~~~i~~~~~~~~-~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D-~Vi~A~G~~p~~~~~~ 386 (564)
T PRK12771 317 REGVEINWLRTPVEIEGDENGAT-GLRVITVEKMELDEDGRPSPVTGEEETLEAD-LVVLAIGQDIDSAGLE 386 (564)
T ss_pred HcCCEEEecCCcEEEEcCCCCEE-EEEEEEEEecccCCCCCeeecCCceEEEECC-EEEECcCCCCchhhhh
Confidence 46899999999999976534444 766532 1 3456789996 7999999665555554
No 187
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=34.21 E-value=52 Score=34.77 Aligned_cols=53 Identities=21% Similarity=0.317 Sum_probs=36.7
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQ 224 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~ 224 (522)
+..+++++++++|++|..+..+++..+.. . +|+..++.++ .||+|.|..-+..
T Consensus 232 ~~~gI~i~~~~~v~~i~~~~~~~~~~~~~-~-~g~~~~i~~D-~vi~a~G~~p~~~ 284 (472)
T PRK05976 232 KKLGVRVVTGAKVLGLTLKKDGGVLIVAE-H-NGEEKTLEAD-KVLVSVGRRPNTE 284 (472)
T ss_pred HhcCCEEEeCcEEEEEEEecCCCEEEEEE-e-CCceEEEEeC-EEEEeeCCccCCC
Confidence 56799999999999997621123333322 2 5776789996 7999999765543
No 188
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=34.16 E-value=1.2e+02 Score=30.09 Aligned_cols=59 Identities=27% Similarity=0.436 Sum_probs=47.3
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHHhCC
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 231 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~SGi 231 (522)
+++|++++.++.+.+|.-+ + +.+|++++..|++..+..+ .|+++-|..-...|+...++
T Consensus 190 ~~~~i~~~~~~~i~ei~G~-~--v~~v~l~~~~~~~~~~~~~-gvf~~iG~~p~~~~~~~~~~ 248 (305)
T COG0492 190 KNVKIEVLTNTVVKEILGD-D--VEGVVLKNVKGEEKELPVD-GVFIAIGHLPNTELLKGLGV 248 (305)
T ss_pred hcCCeEEEeCCceeEEecC-c--cceEEEEecCCceEEEEec-eEEEecCCCCchHHHhhccc
Confidence 5669999999999998776 3 8899988744778888986 69999998777777776543
No 189
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=33.75 E-value=78 Score=32.55 Aligned_cols=55 Identities=22% Similarity=0.304 Sum_probs=39.4
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHHhCC
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 231 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~SGi 231 (522)
...++++++++.|++|..+ +. ..|++. +|+ ++.++ .||+|.|..-...|+..+|+
T Consensus 197 ~~~GV~i~~~~~V~~i~~~--~~-~~v~l~--~g~--~i~aD-~Vv~a~G~~pn~~l~~~~gl 251 (396)
T PRK09754 197 QQAGVRILLNNAIEHVVDG--EK-VELTLQ--SGE--TLQAD-VVIYGIGISANDQLAREANL 251 (396)
T ss_pred HHCCCEEEeCCeeEEEEcC--CE-EEEEEC--CCC--EEECC-EEEECCCCChhhHHHHhcCC
Confidence 4678999999999998643 22 234332 465 47885 79999998877777766665
No 190
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=33.59 E-value=54 Score=33.90 Aligned_cols=54 Identities=31% Similarity=0.408 Sum_probs=36.8
Q ss_pred hcccccCCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhH
Q psy14407 162 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQ 224 (522)
Q Consensus 162 ~l~~~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~ 224 (522)
.|...+ ++.++++++++.|++|..+ ++ ...|+. +++ ++.++ .||+|+|....|.
T Consensus 110 ~L~~~l-~~~gv~i~~~~~V~~i~~~-~~-~~~v~~---~~~--~i~ad-~VIlAtG~~s~p~ 163 (400)
T TIGR00275 110 ALLNEL-KELGVEILTNSKVKSIKKD-DN-GFGVET---SGG--EYEAD-KVILATGGLSYPQ 163 (400)
T ss_pred HHHHHH-HHCCCEEEeCCEEEEEEec-CC-eEEEEE---CCc--EEEcC-EEEECCCCcccCC
Confidence 343434 5678999999999999765 33 233443 233 47884 7999999876653
No 191
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=33.49 E-value=61 Score=33.72 Aligned_cols=48 Identities=19% Similarity=0.104 Sum_probs=30.7
Q ss_pred ccCCCCceeCcCCceEe-cccCCCCCCCchhHH-HHHHHHHHHHHHHhhhc
Q psy14407 470 VVTPDLKVKGIKGLRVA-DISVLPNAIITQSDA-ISYMIGEKCADLVKTSY 518 (522)
Q Consensus 470 VVD~~~rv~g~~NL~V~-DaSv~P~~~~~NPtl-Ti~Ala~r~Ad~i~~~~ 518 (522)
.||+.+|+-+++|+|++ |++.++..+ ..++. .++.-|..+|+.|...+
T Consensus 298 ~Vd~~l~~~~~~~IfAiGD~a~~~~~~-~~~~~~~A~~qg~~~A~ni~~~l 347 (424)
T PTZ00318 298 SVDDHLRVKPIPNVFALGDCAANEERP-LPTLAQVASQQGVYLAKEFNNEL 347 (424)
T ss_pred EeCCCcccCCCCCEEEEeccccCCCCC-CCCchHHHHHHHHHHHHHHHHHh
Confidence 68999999999999976 556565322 22232 23455666777666543
No 192
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=33.32 E-value=60 Score=36.95 Aligned_cols=56 Identities=20% Similarity=0.391 Sum_probs=42.6
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHHhCC
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 231 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~SGi 231 (522)
+..++++++++.|++|.-+ +++.+|++.+ |+ ++.++ .||+|+|.--+..|+..+|+
T Consensus 193 ~~~GV~v~~~~~v~~i~~~--~~~~~v~~~d--G~--~i~~D-~Vi~a~G~~Pn~~la~~~gl 248 (785)
T TIGR02374 193 EQKGLTFLLEKDTVEIVGA--TKADRIRFKD--GS--SLEAD-LIVMAAGIRPNDELAVSAGI 248 (785)
T ss_pred HHcCCEEEeCCceEEEEcC--CceEEEEECC--CC--EEEcC-EEEECCCCCcCcHHHHhcCC
Confidence 5779999999999998654 3566776654 65 57885 79999998777777766765
No 193
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=33.29 E-value=57 Score=34.45 Aligned_cols=54 Identities=17% Similarity=0.151 Sum_probs=37.2
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhhhHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQL 225 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~Tp~L 225 (522)
+..++++++++.|++|..+ ++. ..|++.+. +|...++.++ .||+|.|..-+...
T Consensus 226 ~~~gV~i~~~~~V~~i~~~-~~~-v~v~~~~~~~g~~~~i~~D-~vi~a~G~~pn~~~ 280 (466)
T PRK06115 226 TKQGMKFKLGSKVTGATAG-ADG-VSLTLEPAAGGAAETLQAD-YVLVAIGRRPYTQG 280 (466)
T ss_pred HhcCCEEEECcEEEEEEEc-CCe-EEEEEEEcCCCceeEEEeC-EEEEccCCcccccc
Confidence 4678999999999999765 222 23344322 4556779995 79999997655443
No 194
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=31.90 E-value=85 Score=31.98 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=31.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcch
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAI 220 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai 220 (522)
+.++++++.+++|++|..+ ++.+ .|++. +|. ++.+ +.||.|.|.-
T Consensus 124 ~~~g~~~~~~~~v~~i~~~-~~~~-~v~~~--~g~--~~~a-~~vI~AdG~~ 168 (395)
T PRK05732 124 KAPGVTLHCPARVANVERT-QGSV-RVTLD--DGE--TLTG-RLLVAADGSH 168 (395)
T ss_pred cCCCcEEEcCCEEEEEEEc-CCeE-EEEEC--CCC--EEEe-CEEEEecCCC
Confidence 4578999999999999776 3332 24332 453 5788 4788888863
No 195
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=31.64 E-value=70 Score=32.55 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=28.9
Q ss_pred CeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcch
Q psy14407 172 NLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAI 220 (522)
Q Consensus 172 n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai 220 (522)
+.+|+++++|++|..+ ++++ .|.+. +|+ +++|+ .||+|+..=
T Consensus 223 g~~i~l~~~V~~I~~~-~~~v-~v~~~--~g~--~~~ad-~VI~a~p~~ 264 (450)
T PF01593_consen 223 GGEIRLNTPVTRIERE-DGGV-TVTTE--DGE--TIEAD-AVISAVPPS 264 (450)
T ss_dssp GGGEESSEEEEEEEEE-SSEE-EEEET--TSS--EEEES-EEEE-S-HH
T ss_pred CceeecCCcceecccc-cccc-ccccc--cce--EEecc-eeeecCchh
Confidence 4589999999999998 5444 24444 455 78895 698888753
No 196
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=30.86 E-value=69 Score=32.80 Aligned_cols=50 Identities=20% Similarity=0.169 Sum_probs=32.6
Q ss_pred CCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHH
Q psy14407 170 RTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQL 225 (522)
Q Consensus 170 ~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~L 225 (522)
..+.+|+++++|++|..+ +++++ +.+.. +|+ ++.++ .||++.-+-...+|
T Consensus 209 ~~g~~i~~~~~V~~i~~~-~~~~~-~~~~~-~g~--~~~~d-~vi~a~p~~~~~~l 258 (419)
T TIGR03467 209 SRGGEVRLGTRVRSIEAN-AGGIR-ALVLS-GGE--TLPAD-AVVLAVPPRHAASL 258 (419)
T ss_pred HcCCEEEcCCeeeEEEEc-CCcce-EEEec-CCc--cccCC-EEEEcCCHHHHHHh
Confidence 457899999999999987 44333 22332 454 47785 68887665444443
No 197
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=30.76 E-value=56 Score=25.17 Aligned_cols=33 Identities=15% Similarity=0.383 Sum_probs=26.7
Q ss_pred CcCCceEecccCCCCCCCchhHHHHHHHHHHHH
Q psy14407 479 GIKGLRVADISVLPNAIITQSDAISYMIGEKCA 511 (522)
Q Consensus 479 g~~NL~V~DaSv~P~~~~~NPtlTi~Ala~r~A 511 (522)
...|++|+|..+.|..|......-++++|.=++
T Consensus 37 ~~~~~~ivd~A~~P~~P~~P~~~lil~l~~~~G 69 (82)
T PF13807_consen 37 NVSNVRIVDPAIVPDKPVSPKRALILALGLFLG 69 (82)
T ss_pred cCCCceeccccccCCCCCCCcHHHHHHHHHHHH
Confidence 367889999999999998888888877775443
No 198
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=30.42 E-value=1.3e+02 Score=35.35 Aligned_cols=58 Identities=16% Similarity=0.246 Sum_probs=43.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEe-------c--------CCeEEEEEeCcEEEEcCcchhhhHHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVN-------S--------KGETVRVTANKEVILTAGAIANAQLLL 227 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~-------~--------~g~~~~v~A~k~VILaaGai~Tp~LLl 227 (522)
...+++++..+.+.+|..++++++++|++.. . .|++.++.++ .||+|.|-.-.+.++.
T Consensus 620 ~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D-~Vi~AiG~~p~~~~~~ 692 (1006)
T PRK12775 620 KEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECD-TVIYALGTKANPIITQ 692 (1006)
T ss_pred HhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcC-EEEECCCcCCChhhhh
Confidence 3578999999999999765467899988752 1 2345689996 7999999765555443
No 199
>PRK08163 salicylate hydroxylase; Provisional
Probab=30.29 E-value=1e+02 Score=31.46 Aligned_cols=48 Identities=15% Similarity=0.152 Sum_probs=32.7
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANA 223 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp 223 (522)
+.++++++.+++|+++..+ ++. |.+...+|+ ++.+ +.||.|.|+-...
T Consensus 121 ~~~~v~~~~~~~v~~i~~~-~~~---v~v~~~~g~--~~~a-d~vV~AdG~~S~~ 168 (396)
T PRK08163 121 DHPLVEFRTSTHVVGIEQD-GDG---VTVFDQQGN--RWTG-DALIGCDGVKSVV 168 (396)
T ss_pred hcCCcEEEeCCEEEEEecC-CCc---eEEEEcCCC--EEec-CEEEECCCcChHH
Confidence 4567999999999999876 332 333332454 5788 4788888864444
No 200
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=30.23 E-value=84 Score=33.25 Aligned_cols=53 Identities=21% Similarity=0.299 Sum_probs=36.9
Q ss_pred CCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHH
Q psy14407 170 RTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 226 (522)
Q Consensus 170 ~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LL 226 (522)
.. +++++++.|++|..+ ++. ..|++.+.+|+..++.++ .||+|.|..-+..+|
T Consensus 227 ~~-v~i~~~~~v~~i~~~-~~~-~~v~~~~~~~~~~~i~~D-~vi~a~G~~pn~~~l 279 (471)
T PRK06467 227 KQ-FNIMLETKVTAVEAK-EDG-IYVTMEGKKAPAEPQRYD-AVLVAVGRVPNGKLL 279 (471)
T ss_pred hc-eEEEcCCEEEEEEEc-CCE-EEEEEEeCCCcceEEEeC-EEEEeecccccCCcc
Confidence 44 999999999999765 333 335554423445678996 799999987665544
No 201
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=29.11 E-value=91 Score=34.65 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=33.1
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 226 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LL 226 (522)
.. +++++.+++|++|..+ ++.+. |+ ..+|. .+.++ .||+|+|+ .++.|+
T Consensus 419 ~~-Gv~i~~~~~V~~i~~~-~~~~~-v~--t~~g~--~~~ad-~VV~A~G~-~s~~l~ 467 (662)
T PRK01747 419 GQ-QLTIHFGHEVARLERE-DDGWQ-LD--FAGGT--LASAP-VVVLANGH-DAARFA 467 (662)
T ss_pred cc-CcEEEeCCEeeEEEEe-CCEEE-EE--ECCCc--EEECC-EEEECCCC-Cccccc
Confidence 35 8999999999999876 44433 33 21343 35684 79999997 455443
No 202
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=28.66 E-value=65 Score=30.97 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=41.2
Q ss_pred CcccCCCCceeCcCCceEecccCC--CCCCCchhHHHHHHHH-HHHHHHHhhhcC
Q psy14407 468 NAVVTPDLKVKGIKGLRVADISVL--PNAIITQSDAISYMIG-EKCADLVKTSYN 519 (522)
Q Consensus 468 ~~VVD~~~rv~g~~NL~V~DaSv~--P~~~~~NPtlTi~Ala-~r~Ad~i~~~~~ 519 (522)
+.||+...+| ++||||++-++- =-.|.--|++-.|.++ .|+|+.|+++++
T Consensus 202 ~~~~~~t~~~--~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~~ 254 (254)
T TIGR00292 202 VAIHENTREV--VPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKLK 254 (254)
T ss_pred HHHHhccCcc--cCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHhC
Confidence 4899999999 899999998773 3356678999998875 599999998864
No 203
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=28.48 E-value=69 Score=34.09 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=25.8
Q ss_pred eCcCCceEecccCCCCCCCchhHHHHHHHHHHHHHHHhhhc
Q psy14407 478 KGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSY 518 (522)
Q Consensus 478 ~g~~NL~V~DaSv~P~~~~~NPtlTi~Ala~r~Ad~i~~~~ 518 (522)
-.++|||.|++|++|.. ++ | .+++=|..+|+.|.+++
T Consensus 456 t~i~gLyl~G~~~~pG~-Gv-~--g~~~sG~~~a~~i~~~~ 492 (493)
T TIGR02730 456 TAIPGLYCVGDSCFPGQ-GL-N--AVAFSGFACAHRVAADL 492 (493)
T ss_pred CCCCCeEEecCcCCCCC-CH-H--HHHHHHHHHHHHHHhhc
Confidence 36899999999999943 33 2 23344667777777764
No 204
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=28.46 E-value=48 Score=31.11 Aligned_cols=50 Identities=20% Similarity=0.177 Sum_probs=41.6
Q ss_pred cccCCCCceeCcCCceEecccC--CCCCCCchhHHHHHHHH-HHHHHHHhhhcCC
Q psy14407 469 AVVTPDLKVKGIKGLRVADISV--LPNAIITQSDAISYMIG-EKCADLVKTSYNI 520 (522)
Q Consensus 469 ~VVD~~~rv~g~~NL~V~DaSv--~P~~~~~NPtlTi~Ala-~r~Ad~i~~~~~~ 520 (522)
-||...++| ++||||++-++ +=..|.--|++-.|.++ .++|+.|+++++.
T Consensus 209 lvV~~T~eV--~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~~ 261 (262)
T COG1635 209 LVVENTGEV--YPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLKL 261 (262)
T ss_pred HHHhccccc--cCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhhc
Confidence 788888998 69999999776 55677788999999886 5889999988764
No 205
>PRK06834 hypothetical protein; Provisional
Probab=28.36 E-value=1.1e+02 Score=32.47 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=32.8
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIA 221 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~ 221 (522)
...+++|+.+++|++|..+ +..+ .|++ .+|+ +++++ .||.|.|+-.
T Consensus 111 ~~~gv~i~~~~~v~~v~~~-~~~v-~v~~--~~g~--~i~a~-~vVgADG~~S 156 (488)
T PRK06834 111 GELGVPIYRGREVTGFAQD-DTGV-DVEL--SDGR--TLRAQ-YLVGCDGGRS 156 (488)
T ss_pred HhCCCEEEcCCEEEEEEEc-CCeE-EEEE--CCCC--EEEeC-EEEEecCCCC
Confidence 4558999999999999887 3322 2333 2454 68994 7999999743
No 206
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=28.35 E-value=1.3e+02 Score=32.41 Aligned_cols=50 Identities=20% Similarity=0.163 Sum_probs=34.5
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 222 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~T 222 (522)
+.++++|+.+++|+++..+ +..+ .|.+.+.+| ..++++ +.||.|.|+-.+
T Consensus 137 ~~~~v~v~~~~~v~~i~~~-~~~v-~v~~~~~~g-~~~i~a-d~vVgADG~~S~ 186 (547)
T PRK08132 137 ALPNIDLRWKNKVTGLEQH-DDGV-TLTVETPDG-PYTLEA-DWVIACDGARSP 186 (547)
T ss_pred hCCCcEEEeCCEEEEEEEc-CCEE-EEEEECCCC-cEEEEe-CEEEECCCCCcH
Confidence 4568999999999999887 3322 244444233 457899 578889887443
No 207
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=28.34 E-value=1.1e+02 Score=31.85 Aligned_cols=45 Identities=24% Similarity=0.366 Sum_probs=34.3
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcc
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGA 219 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGa 219 (522)
..-+.+++.+++|+.|++. .+.+.+|...+ |. ++.++ .||||-|=
T Consensus 184 ~~~G~ei~f~t~VeDi~~~-~~~~~~v~~~~--g~--~i~~~-~vvlA~Gr 228 (486)
T COG2509 184 ESLGGEIRFNTEVEDIEIE-DNEVLGVKLTK--GE--EIEAD-YVVLAPGR 228 (486)
T ss_pred HhcCcEEEeeeEEEEEEec-CCceEEEEccC--Cc--EEecC-EEEEccCc
Confidence 4556999999999999998 44466665543 54 68885 79999994
No 208
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=28.21 E-value=1.5e+02 Score=30.03 Aligned_cols=51 Identities=25% Similarity=0.255 Sum_probs=35.1
Q ss_pred CCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHHh
Q psy14407 170 RTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLS 229 (522)
Q Consensus 170 ~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~S 229 (522)
.....+..++.|+.+..+ + ++.+|... +|. +.|+ .||+|+|+ .++.|+-..
T Consensus 169 ~G~~~~~~~~~~~~~~~~-~-~~~~v~t~--~g~---i~a~-~vv~a~G~-~~~~l~~~~ 219 (387)
T COG0665 169 LGVVIIEGGTPVTSLERD-G-RVVGVETD--GGT---IEAD-KVVLAAGA-WAGELAATL 219 (387)
T ss_pred cCCeEEEccceEEEEEec-C-cEEEEEeC--Ccc---EEeC-EEEEcCch-HHHHHHHhc
Confidence 333778889999998775 4 55555433 344 8995 69999997 566666543
No 209
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=27.60 E-value=1.5e+02 Score=28.94 Aligned_cols=64 Identities=27% Similarity=0.249 Sum_probs=43.1
Q ss_pred eecchhhhhcccccCCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHHh
Q psy14407 154 LRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLS 229 (522)
Q Consensus 154 ~R~s~~~~~l~~~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~S 229 (522)
.+.|+...|| ..+++|+.+++|++|... ++ .-.+... +......+ +.|||+.=+=+++.||--+
T Consensus 105 pgmsalak~L------AtdL~V~~~~rVt~v~~~-~~-~W~l~~~---~g~~~~~~-d~vvla~PAPQ~~~LLt~~ 168 (331)
T COG3380 105 PGMSALAKFL------ATDLTVVLETRVTEVART-DN-DWTLHTD---DGTRHTQF-DDVVLAIPAPQTATLLTTD 168 (331)
T ss_pred cchHHHHHHH------hccchhhhhhhhhhheec-CC-eeEEEec---CCCccccc-ceEEEecCCCcchhhcCcc
Confidence 3556665666 357899999999999776 22 2333322 23334566 4799999999999888644
No 210
>PRK13984 putative oxidoreductase; Provisional
Probab=27.54 E-value=1.3e+02 Score=32.91 Aligned_cols=56 Identities=16% Similarity=0.287 Sum_probs=41.2
Q ss_pred CCCeEEEcCcEEEEEEecCCCeEEEEEEEe------cC---------CeEEEEEeCcEEEEcCcchhhhHHHH
Q psy14407 170 RTNLYVLKRSKVTKVIINDQNVATGVEYVN------SK---------GETVRVTANKEVILTAGAIANAQLLL 227 (522)
Q Consensus 170 ~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~------~~---------g~~~~v~A~k~VILaaGai~Tp~LLl 227 (522)
..+++++.++.+++|..+ ++++++|++.+ .+ |...++.++ .||+|.|......+|.
T Consensus 474 ~~GV~i~~~~~~~~i~~~-~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD-~Vi~aiG~~p~~~~l~ 544 (604)
T PRK13984 474 EEGVVIYPGWGPMEVVIE-NDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEAD-MVVEAIGQAPDYSYLP 544 (604)
T ss_pred HcCCEEEeCCCCEEEEcc-CCEEEEEEEEEEeeccCCCCCccceecCCceEEEECC-EEEEeeCCCCChhhhh
Confidence 468999999999988655 67788887652 12 345689996 7999999776556554
No 211
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=27.01 E-value=1.2e+02 Score=31.03 Aligned_cols=56 Identities=25% Similarity=0.297 Sum_probs=35.6
Q ss_pred hhhhcccccCCCCCeEEEcCcEEEEEEecCCCeEEEEEEEe----cCCeEEEEEeCcEEEEcCcc
Q psy14407 159 ADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVN----SKGETVRVTANKEVILTAGA 219 (522)
Q Consensus 159 ~~~~l~~~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~----~~g~~~~v~A~k~VILaaGa 219 (522)
...+|...+ ...+++++.. .|++|..+ ++. ..|.+.+ .+|+..+++| +.||.|-|+
T Consensus 94 fd~~L~~~a-~~~G~~v~~~-~v~~v~~~-~~~-~~v~~~~~~~~~~~~~~~i~a-~~VI~AdG~ 153 (388)
T TIGR02023 94 FDSYLRERA-QKAGAELIHG-LFLKLERD-RDG-VTLTYRTPKKGAGGEKGSVEA-DVVIGADGA 153 (388)
T ss_pred HHHHHHHHH-HhCCCEEEee-EEEEEEEc-CCe-EEEEEEeccccCCCcceEEEe-CEEEECCCC
Confidence 334554433 3568899765 69998776 443 3466654 1345678999 578888885
No 212
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=26.91 E-value=1.2e+02 Score=31.77 Aligned_cols=49 Identities=10% Similarity=0.184 Sum_probs=35.2
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANA 223 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp 223 (522)
.+.+++++++++|++|..+ +.. +.+.. +|+..++.++ .||+|.|..-+.
T Consensus 222 ~~~GI~i~~~~~V~~i~~~-~~~---v~~~~-~g~~~~i~~D-~vivA~G~~p~~ 270 (458)
T PRK06912 222 ENDGVKIFTGAALKGLNSY-KKQ---ALFEY-EGSIQEVNAE-FVLVSVGRKPRV 270 (458)
T ss_pred HHCCCEEEECCEEEEEEEc-CCE---EEEEE-CCceEEEEeC-EEEEecCCccCC
Confidence 4678999999999999765 332 33444 5666678895 799999965443
No 213
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=26.75 E-value=1.3e+02 Score=34.02 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=40.5
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec----------------CCeEEEEEeCcEEEEcCcchhhhH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS----------------KGETVRVTANKEVILTAGAIANAQ 224 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~----------------~g~~~~v~A~k~VILaaGai~Tp~ 224 (522)
...+++++.++.+.+|..++++++++|++... .|++.++.++ .||+|.|..-...
T Consensus 619 ~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D-~Vi~A~G~~p~~~ 689 (752)
T PRK12778 619 KEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVD-LVIVSVGVSPNPL 689 (752)
T ss_pred HHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECC-EEEECcCCCCCcc
Confidence 35689999999999997664678888887421 2445689996 7999999654443
No 214
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=26.44 E-value=98 Score=32.24 Aligned_cols=62 Identities=13% Similarity=0.052 Sum_probs=44.1
Q ss_pred CCCcccccccccCCCCCCcccCCCCceeCcCCceEecc----cCCCCC-CCchhHHHHHHHHHHHHHHHhhh
Q psy14407 451 TTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADI----SVLPNA-IITQSDAISYMIGEKCADLVKTS 517 (522)
Q Consensus 451 ~~~H~~Gt~rMG~~~~~~~VVD~~~rv~g~~NL~V~Da----Sv~P~~-~~~NPtlTi~Ala~r~Ad~i~~~ 517 (522)
...|-+|+.+.-.+ .-|+|.++++ ++|||.++. +++-.. .++|.....+..+..+++.+++.
T Consensus 363 ~~~~T~GGl~id~~---~~Vl~~~g~~--I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~ 429 (432)
T TIGR02485 363 GITFTRYGLVVDAT---ARVRLNDAVA--PDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARL 429 (432)
T ss_pred ccceeccceEECCC---ceEECCCCCC--CCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHh
Confidence 35677888887744 3899999886 899999984 233221 23666777788888888888764
No 215
>PLN02576 protoporphyrinogen oxidase
Probab=26.35 E-value=1.6e+02 Score=31.29 Aligned_cols=52 Identities=29% Similarity=0.282 Sum_probs=34.7
Q ss_pred eEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHH
Q psy14407 173 LYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL 227 (522)
Q Consensus 173 ~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl 227 (522)
.+|++++.|++|..+++++ ..|.+...+|. .++.++ .||+|.-+-...+||.
T Consensus 252 ~~i~l~~~V~~I~~~~~~~-~~v~~~~~~g~-~~~~ad-~VI~a~P~~~l~~ll~ 303 (496)
T PLN02576 252 DKVKLNWKVLSLSKNDDGG-YSLTYDTPEGK-VNVTAK-AVVMTAPLYVVSEMLR 303 (496)
T ss_pred CcEEcCCEEEEEEECCCCc-EEEEEecCCCc-eeEEeC-EEEECCCHHHHHHHhc
Confidence 4699999999998873322 34554432343 468895 6999887666666654
No 216
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=26.34 E-value=1.1e+02 Score=31.15 Aligned_cols=54 Identities=17% Similarity=0.173 Sum_probs=34.6
Q ss_pred hhcccccCCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhh
Q psy14407 161 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANA 223 (522)
Q Consensus 161 ~~l~~~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp 223 (522)
..|...+ ...+++++.+++|++|..+ +..+ .|++. +|. ++++ +.||.|.|+ .|.
T Consensus 115 ~~L~~~~-~~~gv~v~~~~~v~~i~~~-~~~v-~v~~~--~g~--~~~a-d~vI~AdG~-~S~ 168 (403)
T PRK07333 115 NALRKRA-EALGIDLREATSVTDFETR-DEGV-TVTLS--DGS--VLEA-RLLVAADGA-RSK 168 (403)
T ss_pred HHHHHHH-HhCCCEEEcCCEEEEEEEc-CCEE-EEEEC--CCC--EEEe-CEEEEcCCC-ChH
Confidence 3443433 4568999999999999876 4332 24432 454 5788 567777775 443
No 217
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=26.31 E-value=1.2e+02 Score=31.77 Aligned_cols=52 Identities=23% Similarity=0.280 Sum_probs=36.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQL 225 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~L 225 (522)
++. ++|++++.|++|..+ ++ ..|++...++...++.++ .||+|.|..-...+
T Consensus 221 ~~~-I~i~~~~~v~~i~~~-~~--~~v~~~~~~~~~~~i~~D-~vi~a~G~~p~~~~ 272 (460)
T PRK06292 221 SKE-FKIKLGAKVTSVEKS-GD--EKVEELEKGGKTETIEAD-YVLVATGRRPNTDG 272 (460)
T ss_pred hhc-cEEEcCCEEEEEEEc-CC--ceEEEEEcCCceEEEEeC-EEEEccCCccCCCC
Confidence 445 999999999999765 33 234433224666678996 79999997655553
No 218
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=26.28 E-value=77 Score=33.70 Aligned_cols=54 Identities=15% Similarity=0.139 Sum_probs=37.6
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 226 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LL 226 (522)
+..++++++++.+++|... ++. ..|++.+ ++...++.++ .||+|.|-.-++.+|
T Consensus 231 ~~~gV~i~~~~~v~~v~~~-~~~-~~v~~~~-~~~~~~i~~D-~vl~a~G~~pn~~~l 284 (484)
T TIGR01438 231 EEHGVKFKRQFVPIKVEQI-EAK-VKVTFTD-STNGIEEEYD-TVLLAIGRDACTRKL 284 (484)
T ss_pred HHcCCEEEeCceEEEEEEc-CCe-EEEEEec-CCcceEEEeC-EEEEEecCCcCCCcC
Confidence 5678999999999998765 332 3355543 2223468895 799999977666654
No 219
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=25.88 E-value=86 Score=33.01 Aligned_cols=62 Identities=13% Similarity=-0.013 Sum_probs=42.6
Q ss_pred CCCcccccccccCCCCCCcccCCCCceeCcCCceEecc---c-CCCC-CCCchhHHHHHHHHHHHHHHHhhh
Q psy14407 451 TTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADI---S-VLPN-AIITQSDAISYMIGEKCADLVKTS 517 (522)
Q Consensus 451 ~~~H~~Gt~rMG~~~~~~~VVD~~~rv~g~~NL~V~Da---S-v~P~-~~~~NPtlTi~Ala~r~Ad~i~~~ 517 (522)
...+-+|+.++-.+ .-|+|.++++ ++|||.++. + ++-. -+++|...-.+..+..+++++.+.
T Consensus 394 ~~~~t~GGl~~d~~---~~vl~~~g~~--I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~ 460 (466)
T PRK08274 394 GITFTYLGLKVDED---ARVRFADGRP--SPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARH 460 (466)
T ss_pred ceeeecccEEECCC---ceEECCCCCC--CCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHH
Confidence 45667888887744 3788888875 899999983 3 5432 224566666677788888777654
No 220
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=25.61 E-value=1.6e+02 Score=29.99 Aligned_cols=47 Identities=19% Similarity=0.209 Sum_probs=32.2
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANA 223 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp 223 (522)
..++++++.+++|+++..+ ++. ..|.+. +|+ ++++ +.||.|.|+ .|+
T Consensus 124 ~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~--~g~--~~~a-~~vI~AdG~-~S~ 170 (391)
T PRK08020 124 AHPNVTLRCPASLQALQRD-DDG-WELTLA--DGE--EIQA-KLVIGADGA-NSQ 170 (391)
T ss_pred cCCCcEEEcCCeeEEEEEc-CCe-EEEEEC--CCC--EEEe-CEEEEeCCC-Cch
Confidence 4569999999999999876 332 234332 454 5788 578888885 554
No 221
>PRK09126 hypothetical protein; Provisional
Probab=25.30 E-value=1.5e+02 Score=30.22 Aligned_cols=44 Identities=20% Similarity=0.353 Sum_probs=31.3
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcc
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGA 219 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGa 219 (522)
+..+++|+.+++|+++..+ ++. ..|++. +|+ ++++ +.||.|.|.
T Consensus 122 ~~~g~~i~~~~~v~~~~~~-~~~-~~v~~~--~g~--~~~a-~~vI~AdG~ 165 (392)
T PRK09126 122 QQDGIELLTGTRVTAVRTD-DDG-AQVTLA--NGR--RLTA-RLLVAADSR 165 (392)
T ss_pred hCCCcEEEcCCeEEEEEEc-CCe-EEEEEc--CCC--EEEe-CEEEEeCCC
Confidence 4578999999999999876 332 235443 454 6888 468888885
No 222
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=25.07 E-value=1.2e+02 Score=30.78 Aligned_cols=44 Identities=18% Similarity=0.250 Sum_probs=30.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcch
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAI 220 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai 220 (522)
+.+|++++ ++.|++|..+ +..+ .|++. +|. ++++ +.||.|.|+-
T Consensus 123 ~~~~v~~~-~~~v~~i~~~-~~~~-~v~~~--~g~--~~~a-~~vI~adG~~ 166 (388)
T PRK07608 123 FQPNLTWF-PARAQGLEVD-PDAA-TLTLA--DGQ--VLRA-DLVVGADGAH 166 (388)
T ss_pred hCCCcEEE-cceeEEEEec-CCeE-EEEEC--CCC--EEEe-eEEEEeCCCC
Confidence 45569999 9999998776 3322 24433 353 6889 4799999963
No 223
>PRK06847 hypothetical protein; Provisional
Probab=25.05 E-value=1.4e+02 Score=30.18 Aligned_cols=58 Identities=17% Similarity=0.155 Sum_probs=38.1
Q ss_pred hhcccccCCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHH
Q psy14407 161 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 226 (522)
Q Consensus 161 ~~l~~~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LL 226 (522)
.+|...+ ...+++|+.+++|++|..+ ++. ..|.+. +|+ ++.+ +.||.|.|+-...+-+
T Consensus 111 ~~L~~~~-~~~gv~v~~~~~v~~i~~~-~~~-~~v~~~--~g~--~~~a-d~vI~AdG~~s~~r~~ 168 (375)
T PRK06847 111 RILADAA-RAAGADVRLGTTVTAIEQD-DDG-VTVTFS--DGT--TGRY-DLVVGADGLYSKVRSL 168 (375)
T ss_pred HHHHHHH-HHhCCEEEeCCEEEEEEEc-CCE-EEEEEc--CCC--EEEc-CEEEECcCCCcchhhH
Confidence 3443433 4568999999999999876 333 234433 464 5778 4799999976555433
No 224
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=24.74 E-value=1e+02 Score=33.51 Aligned_cols=63 Identities=16% Similarity=0.047 Sum_probs=45.0
Q ss_pred CCCCcccccccccCCCCCCcccCCCCceeCcCCceEecccC---CCC-CCC-chhHHHHHHHHHHHHHHHhhh
Q psy14407 450 TTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISV---LPN-AII-TQSDAISYMIGEKCADLVKTS 517 (522)
Q Consensus 450 ~~~~H~~Gt~rMG~~~~~~~VVD~~~rv~g~~NL~V~DaSv---~P~-~~~-~NPtlTi~Ala~r~Ad~i~~~ 517 (522)
....|-+|+.+.-.+ .-|+|.++++ ++|||.++.-. +-. -++ ++.....+..+..|+++++++
T Consensus 489 ~~~~~T~GGl~id~~---~qVld~~g~p--IpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~~GriAg~~aa~~ 556 (557)
T PRK07843 489 PGDLGTKGGLRTDVR---GRVLRDDGSV--IEGLYAAGNVSAPVMGHTYAGPGATIGPAMTFGYLAALDIAAQ 556 (557)
T ss_pred cccceeCCCceECCC---ceEECCCCCC--cCCceeccccccccccCCcCccccchhhHHHHHHHHHHHHhhc
Confidence 346677888888754 3899999987 89999997543 321 122 555667788888888888764
No 225
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=23.65 E-value=1.4e+02 Score=30.92 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=39.5
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHHhCC
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 231 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~SGi 231 (522)
+..+++++.++.|++|..+ +. + |... +|+ ++.++ .||+|.|..-...+|..+|+
T Consensus 190 ~~~gV~v~~~~~v~~i~~~-~~-~--v~~~--~g~--~i~~D-~vi~a~G~~p~~~~l~~~gl 243 (427)
T TIGR03385 190 KKHEINLRLNEEVDSIEGE-ER-V--KVFT--SGG--VYQAD-MVILATGIKPNSELAKDSGL 243 (427)
T ss_pred HHcCCEEEeCCEEEEEecC-CC-E--EEEc--CCC--EEEeC-EEEECCCccCCHHHHHhcCc
Confidence 5678999999999998654 32 2 3333 454 47885 79999998877778777765
No 226
>PRK06116 glutathione reductase; Validated
Probab=23.57 E-value=1.1e+02 Score=32.14 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=34.7
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQ 224 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~ 224 (522)
+..++++++++.|++|..++++.+ .|++. +|+ ++.++ .||+|.|..-...
T Consensus 219 ~~~GV~i~~~~~V~~i~~~~~g~~-~v~~~--~g~--~i~~D-~Vv~a~G~~p~~~ 268 (450)
T PRK06116 219 EKKGIRLHTNAVPKAVEKNADGSL-TLTLE--DGE--TLTVD-CLIWAIGREPNTD 268 (450)
T ss_pred HHCCcEEECCCEEEEEEEcCCceE-EEEEc--CCc--EEEeC-EEEEeeCCCcCCC
Confidence 567899999999999987523322 34433 454 57885 7999999654444
No 227
>PRK07190 hypothetical protein; Provisional
Probab=23.44 E-value=1.6e+02 Score=31.40 Aligned_cols=46 Identities=26% Similarity=0.306 Sum_probs=32.5
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIA 221 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~ 221 (522)
...+++|..+++|+.|..+ +..+ .+...+|+ +++| +-||.|.|+=.
T Consensus 120 ~~~Gv~v~~~~~v~~l~~~-~~~v---~v~~~~g~--~v~a-~~vVgADG~~S 165 (487)
T PRK07190 120 KEAGAAVKRNTSVVNIELN-QAGC---LTTLSNGE--RIQS-RYVIGADGSRS 165 (487)
T ss_pred HHCCCEEEeCCEEEEEEEc-CCee---EEEECCCc--EEEe-CEEEECCCCCH
Confidence 3558999999999999887 3322 22222454 7899 57999999743
No 228
>PRK06184 hypothetical protein; Provisional
Probab=23.43 E-value=2e+02 Score=30.69 Aligned_cols=49 Identities=8% Similarity=-0.010 Sum_probs=33.3
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIA 221 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~ 221 (522)
...+++|+.+++|++|..+ +..+ .|.+.. .+...++++ +.||.|.|+=.
T Consensus 120 ~~~gv~i~~~~~v~~i~~~-~~~v-~v~~~~-~~~~~~i~a-~~vVgADG~~S 168 (502)
T PRK06184 120 AELGHRVEFGCELVGFEQD-ADGV-TARVAG-PAGEETVRA-RYLVGADGGRS 168 (502)
T ss_pred HHCCCEEEeCcEEEEEEEc-CCcE-EEEEEe-CCCeEEEEe-CEEEECCCCch
Confidence 3458999999999999877 3333 233443 223457999 47999988644
No 229
>PRK08275 putative oxidoreductase; Provisional
Probab=23.40 E-value=1.2e+02 Score=32.84 Aligned_cols=55 Identities=9% Similarity=-0.044 Sum_probs=39.7
Q ss_pred CCcccccccccCCCCCCcccCCCCceeCcCCceEecccCCCCCCCchhHHHHHHHHHHHHHHHh
Q psy14407 452 TSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVK 515 (522)
Q Consensus 452 ~~H~~Gt~rMG~~~~~~~VVD~~~rv~g~~NL~V~DaSv~P~~~~~NPtlTi~Ala~r~Ad~i~ 515 (522)
..|.+|+..|| .=.||.+++. .++|||.|+-... .+.|-.+..+..+.++++.+.
T Consensus 347 ~~~~~g~~~~G-----gi~~d~~~~t-~i~gl~a~Ge~~~---~~~~~~~~~~~~G~~a~~~~~ 401 (554)
T PRK08275 347 EIGFCSGHSAS-----GVWVNEKAET-TVPGLYAAGDMAS---VPHNYMLGAFTYGWFAGENAA 401 (554)
T ss_pred CceeecccccC-----cEEECCCCcc-CCCCEEECcccCC---chhHHHHHHHHHHHHHHHHHH
Confidence 46777878888 1478999997 7999999877542 125766767777777777664
No 230
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=23.27 E-value=1.2e+02 Score=32.77 Aligned_cols=61 Identities=16% Similarity=0.070 Sum_probs=42.8
Q ss_pred CCCcccccccccCCCCCCcccCCCCceeCcCCceEecccC--C------CCCCCchhHHHHHHHHHHHHHHHhh
Q psy14407 451 TTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISV--L------PNAIITQSDAISYMIGEKCADLVKT 516 (522)
Q Consensus 451 ~~~H~~Gt~rMG~~~~~~~VVD~~~rv~g~~NL~V~DaSv--~------P~~~~~NPtlTi~Ala~r~Ad~i~~ 516 (522)
...+-+|+++.-.+ .-|+|.++++ ++|||.++.-. | ....+++.....+..+..+++++++
T Consensus 480 ~~~~T~GGl~id~~---~qVld~dg~p--IpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~GriAg~~aa~ 548 (549)
T PRK12834 480 LTRKTLGGLETDLD---SRVLGADGTP--LPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAAAR 548 (549)
T ss_pred cccEEccCEeECCC---CceeCCCCCE--eCCeeeceecccccCCCcCCccccccchHHHHHHHHHHHHHHHhh
Confidence 45677888887754 3899999987 89999997553 1 1112355567777888888887764
No 231
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=23.17 E-value=1.2e+02 Score=33.09 Aligned_cols=61 Identities=11% Similarity=0.069 Sum_probs=37.6
Q ss_pred CCcccccccccCCCCCCcccCC---CCceeCcCCceEecccCCCC-----CCCchhHHHHHHHHHHHHHHHhhh
Q psy14407 452 TSNPVGTVMMGNADDPNAVVTP---DLKVKGIKGLRVADISVLPN-----AIITQSDAISYMIGEKCADLVKTS 517 (522)
Q Consensus 452 ~~H~~Gt~rMG~~~~~~~VVD~---~~rv~g~~NL~V~DaSv~P~-----~~~~NPtlTi~Ala~r~Ad~i~~~ 517 (522)
.++.+|+.+...+ .-|+|. ++. .++|||.++-..--. -.++|..+-.+..+.++++.+.+.
T Consensus 357 ~h~t~GGi~vd~~---g~~~~~~~~~g~--~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~~ 425 (591)
T PRK07057 357 IHYQMGGIPTNIH---GQVVGTSRDHKE--PVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVDH 425 (591)
T ss_pred HheeCCCeeECCC---CcEeccccCCCC--eeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 4556666655422 133332 233 389999988754211 124578888899999999887643
No 232
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=22.84 E-value=1.2e+02 Score=32.46 Aligned_cols=63 Identities=21% Similarity=0.137 Sum_probs=46.0
Q ss_pred CCCcccccccccCCCCCCcccCCCCceeCcCCceEeccc---CCC-CCCCchhHHHHHHHHHHHHHHHhhhc
Q psy14407 451 TTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADIS---VLP-NAIITQSDAISYMIGEKCADLVKTSY 518 (522)
Q Consensus 451 ~~~H~~Gt~rMG~~~~~~~VVD~~~rv~g~~NL~V~DaS---v~P-~~~~~NPtlTi~Ala~r~Ad~i~~~~ 518 (522)
..+|-+|+.+.-.+ .-|+|.++++ ++|||.++.- ++- .-.++|.....+..+..+++++.+..
T Consensus 437 ~~~~T~GGl~in~~---~qVld~~g~p--I~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~~ 503 (506)
T PRK06481 437 GIHYTMGGVKINTN---TEVLKKDGSP--ITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAEFA 503 (506)
T ss_pred ceeecccCeEECCC---ceEEcCCCCE--eCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 35677888887744 3788888886 9999999763 332 23457788888888888888887643
No 233
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=22.51 E-value=1.4e+02 Score=31.01 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=34.1
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcch
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAI 220 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai 220 (522)
.+.+++++.+++|++|..+ +. .|++.+. +|++.++..+ .+|||.|+-
T Consensus 67 ~~~gv~~~~~~~V~~id~~-~~---~v~~~~~~~~~~~~~~yd-~lviAtG~~ 114 (444)
T PRK09564 67 IKSGIDVKTEHEVVKVDAK-NK---TITVKNLKTGSIFNDTYD-KLMIATGAR 114 (444)
T ss_pred HHCCCeEEecCEEEEEECC-CC---EEEEEECCCCCEEEecCC-EEEECCCCC
Confidence 4568999999999999876 43 3445442 3556666685 699999974
No 234
>PRK07538 hypothetical protein; Provisional
Probab=22.39 E-value=1.6e+02 Score=30.31 Aligned_cols=49 Identities=20% Similarity=0.128 Sum_probs=31.3
Q ss_pred CCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhhh
Q psy14407 171 TNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANA 223 (522)
Q Consensus 171 ~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~Tp 223 (522)
+..+|+.+++|+++..++++.+ |.+.+. +|+..+++| +.||-|-| ++|.
T Consensus 117 g~~~i~~~~~v~~~~~~~~~~~--~~~~~~~~g~~~~~~a-dlvIgADG-~~S~ 166 (413)
T PRK07538 117 GPDAVRTGHRVVGFEQDADVTV--VFLGDRAGGDLVSVRG-DVLIGADG-IHSA 166 (413)
T ss_pred CCcEEEcCCEEEEEEecCCceE--EEEeccCCCccceEEe-eEEEECCC-CCHH
Confidence 3467999999999987633333 333332 456678999 45555555 4553
No 235
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=22.29 E-value=3.2e+02 Score=25.74 Aligned_cols=53 Identities=21% Similarity=0.325 Sum_probs=37.1
Q ss_pred cccccCCCCCeEEEcCcEEEEEEecCCCeEEEEEEEec----CC---eEEEEEeCcEEEEcCc
Q psy14407 163 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS----KG---ETVRVTANKEVILTAG 218 (522)
Q Consensus 163 l~~~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~----~g---~~~~v~A~k~VILaaG 218 (522)
+..++ ..|++|+..+.|+.+.+.++.|+.||.+.-. .| ...+++| |.||=|+|
T Consensus 103 ~s~a~--~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~a-k~ViDaTG 162 (230)
T PF01946_consen 103 ASKAI--DAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRA-KVVIDATG 162 (230)
T ss_dssp HHHHH--TTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEE-SEEEE---
T ss_pred HHHHh--cCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEE-eEEEeCCC
Confidence 33455 5999999999999998883489999988642 33 2478999 56776766
No 236
>PLN02661 Putative thiazole synthesis
Probab=22.15 E-value=91 Score=31.62 Aligned_cols=51 Identities=22% Similarity=0.299 Sum_probs=42.5
Q ss_pred CcccCCCCceeCcCCceEecccC--CCCCCCchhHHHHHHHH-HHHHHHHhhhcCC
Q psy14407 468 NAVVTPDLKVKGIKGLRVADISV--LPNAIITQSDAISYMIG-EKCADLVKTSYNI 520 (522)
Q Consensus 468 ~~VVD~~~rv~g~~NL~V~DaSv--~P~~~~~NPtlTi~Ala-~r~Ad~i~~~~~~ 520 (522)
+.||+...+| ++||||++-++ .=..|.--|++-.|.++ .|+|+.|+++++.
T Consensus 276 ~~~v~~t~ev--~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~~ 329 (357)
T PLN02661 276 DAIVRLTREV--VPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGL 329 (357)
T ss_pred HHHHhccCcc--cCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHcc
Confidence 4999999999 89999999877 44566778999999875 5999999998853
No 237
>KOG1335|consensus
Probab=22.05 E-value=2.1e+02 Score=29.34 Aligned_cols=65 Identities=18% Similarity=0.373 Sum_probs=47.4
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhhhHHHHHhCCCChhhhhhCCCCc
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPV 244 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~Tp~LLl~SGig~~~~l~~~gi~~ 244 (522)
..+++..+++++|+....+.++ -+-|++.+. +|+..+++++ .+.+|.| |-=+..|+| |+..|+..
T Consensus 263 ~kQgikF~l~tkv~~a~~~~dg-~v~i~ve~ak~~k~~tle~D-vlLVsiG-----RrP~t~GLg----le~iGi~~ 328 (506)
T KOG1335|consen 263 QKQGIKFKLGTKVTSATRNGDG-PVEIEVENAKTGKKETLECD-VLLVSIG-----RRPFTEGLG----LEKIGIEL 328 (506)
T ss_pred HhcCceeEeccEEEEeeccCCC-ceEEEEEecCCCceeEEEee-EEEEEcc-----CcccccCCC----hhhccccc
Confidence 4688999999999999888222 456777765 7888999995 7888988 223556766 55566544
No 238
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=22.03 E-value=1.5e+02 Score=32.77 Aligned_cols=63 Identities=19% Similarity=0.138 Sum_probs=39.0
Q ss_pred CCcccccccccCCCCCCcccCCCCce--eCcCCceEecccCCCC-----CCCchhHHHHHHHHHHHHHHHhhh
Q psy14407 452 TSNPVGTVMMGNADDPNAVVTPDLKV--KGIKGLRVADISVLPN-----AIITQSDAISYMIGEKCADLVKTS 517 (522)
Q Consensus 452 ~~H~~Gt~rMG~~~~~~~VVD~~~rv--~g~~NL~V~DaSv~P~-----~~~~NPtlTi~Ala~r~Ad~i~~~ 517 (522)
.++.+|+.+.-.+ .-|+|.++.- -.++|||.++-..--. -.++|..+..+..+.++++.+.+.
T Consensus 396 ~hyt~GGi~vd~~---g~vl~~~g~~~~t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~~ 465 (635)
T PLN00128 396 VHYNMGGIPTNYH---GEVVTIKGDDPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEI 465 (635)
T ss_pred ceEecCCcccCCC---CeEecccCcccCCccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHh
Confidence 4555666654422 1444443311 2499999998754211 124688899999999999988653
No 239
>PRK06475 salicylate hydroxylase; Provisional
Probab=21.10 E-value=1.6e+02 Score=30.29 Aligned_cols=50 Identities=8% Similarity=0.102 Sum_probs=30.9
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhh
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANA 223 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp 223 (522)
..+++++..+++|+++..+ ++. +.|++.+ .+...++++ + +|++|-.+.|.
T Consensus 119 ~~~~i~v~~~~~v~~~~~~-~~~-v~v~~~~-~~~~~~~~a-d-lvIgADG~~S~ 168 (400)
T PRK06475 119 NNPGIEIKLGAEMTSQRQT-GNS-ITATIIR-TNSVETVSA-A-YLIACDGVWSM 168 (400)
T ss_pred hcCCcEEEECCEEEEEecC-CCc-eEEEEEe-CCCCcEEec-C-EEEECCCccHh
Confidence 4468999999999999776 333 3344444 222245788 4 55555555664
No 240
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=20.76 E-value=2.7e+02 Score=32.47 Aligned_cols=54 Identities=20% Similarity=0.186 Sum_probs=39.9
Q ss_pred CCCeEEEcCcEEEEEEec-CCCeEEEEEEEe-------c--------CCeEEEEEeCcEEEEcCcchhhhH
Q psy14407 170 RTNLYVLKRSKVTKVIIN-DQNVATGVEYVN-------S--------KGETVRVTANKEVILTAGAIANAQ 224 (522)
Q Consensus 170 ~~n~~v~~~~~V~~I~~~-~~~~a~gV~~~~-------~--------~g~~~~v~A~k~VILaaGai~Tp~ 224 (522)
..++++...+.+++|.-+ +++++++|++.. . .|++.++.++ .||+|.|...++.
T Consensus 496 eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD-~VI~AiG~~p~~~ 565 (944)
T PRK12779 496 EEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVD-LVIMALGNTANPI 565 (944)
T ss_pred HCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECC-EEEEcCCcCCChh
Confidence 458999999999999766 355788877631 1 3556789996 7999999765543
No 241
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=20.69 E-value=1.4e+02 Score=32.60 Aligned_cols=62 Identities=10% Similarity=-0.039 Sum_probs=39.6
Q ss_pred CCcccccccccCCCCCCcccCCC--CceeCcCCceEecccCC---CC--CCCchhHHHHHHHHHHHHHHHhh
Q psy14407 452 TSNPVGTVMMGNADDPNAVVTPD--LKVKGIKGLRVADISVL---PN--AIITQSDAISYMIGEKCADLVKT 516 (522)
Q Consensus 452 ~~H~~Gt~rMG~~~~~~~VVD~~--~rv~g~~NL~V~DaSv~---P~--~~~~NPtlTi~Ala~r~Ad~i~~ 516 (522)
.++-+|+.++-.+ .-|+|.+ ++--.++|||.|+-..- -. -.++|..+-.+..+.++++.+.+
T Consensus 353 ~h~t~GGi~vd~~---g~v~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~ 421 (588)
T PRK08958 353 CHYMMGGIPTKVT---GQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQE 421 (588)
T ss_pred hcEeCCCeeECCC---ceeeccccccCCCccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHHH
Confidence 4556666666533 2455544 32235999999986432 11 23568888888999999888764
No 242
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=20.68 E-value=1.8e+02 Score=30.76 Aligned_cols=46 Identities=24% Similarity=0.319 Sum_probs=34.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcc
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGA 219 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGa 219 (522)
+..+++++++++|+++..+ ++. +.|++.+ |+..+++++ .|++|.|=
T Consensus 225 ~~~gv~i~~~~~v~~~~~~-~~~-v~v~~~~--g~~~~~~ad-~vLvAiGR 270 (454)
T COG1249 225 EKGGVKILLNTKVTAVEKK-DDG-VLVTLED--GEGGTIEAD-AVLVAIGR 270 (454)
T ss_pred HhCCeEEEccceEEEEEec-CCe-EEEEEec--CCCCEEEee-EEEEccCC
Confidence 4578999999999999886 332 4555554 444478896 69999993
No 243
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=20.47 E-value=1.6e+02 Score=30.54 Aligned_cols=51 Identities=24% Similarity=0.243 Sum_probs=34.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEEeCcEEEEcCcchhhhHHH
Q psy14407 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLL 226 (522)
Q Consensus 169 ~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaaGai~Tp~LL 226 (522)
.+.+++++.+++|++|..+ .. .|++.+. +++++.+.++ .||||.|+ +|+.+
T Consensus 55 ~~~gv~~~~~~~V~~id~~-~~---~v~~~~~~~~~~~~~~yd-~lIiATG~--~p~~~ 106 (427)
T TIGR03385 55 KKRGIDVKTNHEVIEVNDE-RQ---TVVVRNNKTNETYEESYD-YLILSPGA--SPIVP 106 (427)
T ss_pred HhcCCeEEecCEEEEEECC-CC---EEEEEECCCCCEEecCCC-EEEECCCC--CCCCC
Confidence 4668999999999999776 33 3444442 2334444485 69999997 55544
No 244
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=20.45 E-value=1.2e+02 Score=32.06 Aligned_cols=54 Identities=22% Similarity=0.327 Sum_probs=35.5
Q ss_pred hhhhcccccCCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEEeCcEEEEcCcc
Q psy14407 159 ADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGA 219 (522)
Q Consensus 159 ~~~~l~~~~~~~~n~~v~~~~~V~~I~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGa 219 (522)
...+|...+ ...+++++.++ |+++.+++++.+.+|+..+ |+ +++| +-||=|.|.
T Consensus 156 fd~~L~~~A-~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~--g~--~i~a-d~~IDASG~ 209 (454)
T PF04820_consen 156 FDQFLRRHA-EERGVEVIEGT-VVDVELDEDGRITAVRLDD--GR--TIEA-DFFIDASGR 209 (454)
T ss_dssp HHHHHHHHH-HHTT-EEEET--EEEEEE-TTSEEEEEEETT--SE--EEEE-SEEEE-SGG
T ss_pred HHHHHHHHH-hcCCCEEEeCE-EEEEEEcCCCCEEEEEECC--CC--EEEE-eEEEECCCc
Confidence 345665533 45699999885 7788777677888887765 54 6889 478888874
Done!