RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14407
(522 letters)
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 365 bits (939), Expect = e-120
Identities = 119/542 (21%), Positives = 193/542 (35%), Gaps = 68/542 (12%)
Query: 8 SEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GY 66
+ D YL P + R I AGKGLGGS+ + + R +++ K+ G
Sbjct: 79 TTVDQNYLTVP----LINNR--TNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGM 132
Query: 67 NGWGYDETLKYFVKSEDYR-------SVIYNESKAVHGTQGYLPVGLFKN-KENNIIREI 118
GW +D +Y K+E R + ++ + HGT G + G N + + I +
Sbjct: 133 EGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKA 192
Query: 119 FETSAQELGYPCPKDMNDRYVDVGFAELPG-MTRYGLRFSAADAYLTPIAGKRTNLYVLK 177
+ LG P +D G + + + +R AA A+L P +R+NL +L
Sbjct: 193 LMNTVSALGVPVQQDFL-CGHPRGVSMIMNNLDENQVRVDAARAWLLPNY-QRSNLEILT 250
Query: 178 RSKVTKVIINDQN---VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPK 234
V KV+ A GV + +K V A EV+L AG+ + +L SGIG K
Sbjct: 251 GQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLK 310
Query: 235 AHLDEVKIPVKQDLRVGENL----------KLNAQFTGPVMAFSAPLKRTVYSQEMVFKY 284
+ LD+ + DL VG N+ + ++ G A E Y
Sbjct: 311 SVLDQANVTQLLDLPVGINMQDQTTTTVSSRASSAGAGQGQAVFFANF-----TETFGDY 365
Query: 285 LVNRIGPL-SNAGLW-SFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDE 342
L + W T N ++ +N + +
Sbjct: 366 APQARDLLNTKLDQWAEETVARGGFHNVTALKVQYE---NYRNWLLD------------- 409
Query: 343 VQTAYVNLNKRTDMGV-ISMSLVNPKSCGKVTLKSADPL-APPCIDTGILSEPEDLATLI 400
A+ L T+ + + + P + G V + S+DP D DL
Sbjct: 410 EDVAFAELFMDTEGKINFDLWDLIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQA 469
Query: 401 RGTDYITRLEQTEAI-RLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTV 459
+ L A+ G + + + W+ Y+ + V +
Sbjct: 470 AASKLARDLTSQGAMKEYFAGETLP----GYNLVQNATLSQWSDYVLQNFRPNWHAVSSC 525
Query: 460 MMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAII---TQSDAISYMIGEKCADLVKT 516
M + + VV KV G +GLRV D S+ P + I Y + K AD +
Sbjct: 526 SMM-SRELGGVVDATAKVYGTQGLRVIDGSIPPT-QVSSHVM--TIFYGMALKVADAILD 581
Query: 517 SY 518
Y
Sbjct: 582 DY 583
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 354 bits (911), Expect = e-116
Identities = 139/541 (25%), Positives = 212/541 (39%), Gaps = 67/541 (12%)
Query: 8 SEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GY 66
S FD Y AG R I G+ LGGSS+V ++ RG++ D++ +A + G
Sbjct: 57 SIFDWNYTTTAQ--AGYNGR--SIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGD 112
Query: 67 NGWGYDETLKYFVKSEDY------RSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFE 120
GW +D ++ K+E + AVHGT G + + L + +
Sbjct: 113 EGWNWDNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFP--TPLDDRVL 170
Query: 121 TSAQELGYPCPK--DMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKR 178
+ QE DM +G + G R S++ AYL P A R NL VL
Sbjct: 171 ATTQEQSEEFFFNPDMG-TGHPLGISWSIASVGNGQRSSSSTAYLRP-AQSRPNLSVLIN 228
Query: 179 SKVTKVIINDQN------VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 232
++VTK++ + T V A KEV+L+AG++ LL LSGIG
Sbjct: 229 AQVTKLVNSGTTNGLPAFRCVEYAE-QEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIG 287
Query: 233 PKAHLDEVKIPVKQDLR-VGENL----KLNAQF--TGPVMAFSAPLKRTVYSQEMVFKYL 285
+ L V I + VG NL L A F F + + + ++
Sbjct: 288 DENDLSSVGIDTIVNNPSVGRNLSDHLLLPAAFFVNSNQT-FDNIFRDSSEFNVDLDQWT 346
Query: 286 VNRIGPLS----NAGLW----SFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAY 337
R GPL+ N W S + T + A H
Sbjct: 347 NTRTGPLTALIANHLAWLRLPSNSSIFQTFPDPAAGPNSAHWETI--------------- 391
Query: 338 DFNDEVQTAYVNLNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLA 397
F+++ + ++ +L++P + G + L +++P P I+ LS D+
Sbjct: 392 -FSNQWFHPAIPRPDTGSFMSVTNALISPVARGDIKLATSNPFDKPLINPQYLSTEFDIF 450
Query: 398 TLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVG 457
T+I+ R +A L + + YIR T +PVG
Sbjct: 451 TMIQAVKSNLRFLSGQAWADFVIRPFDPRLRDPT-----DDAAIESYIRDNANTIFHPVG 505
Query: 458 TVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAII---TQSDAISYMIGEKCADLV 514
T M VV PDLKVKG+ GLR+ D S+LP TQ Y++G++ ADL+
Sbjct: 506 TASMSPRGASWGVVDPDLKVKGVDGLRIVDGSILPF-APNAHTQ--GPIYLVGKQGADLI 562
Query: 515 K 515
K
Sbjct: 563 K 563
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 348 bits (894), Expect = e-114
Identities = 111/540 (20%), Positives = 191/540 (35%), Gaps = 61/540 (11%)
Query: 8 SEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GY 66
S DHAY + I +G GLGGS+ V + R +++ + G
Sbjct: 74 SSVDHAYETVE---LATNNQ--TALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGN 128
Query: 67 NGWGYDETLKYFVKSEDYRSVIYNESK-------AVHGTQGYLPVGLFK-NKENNIIREI 118
GW +D Y +++E R+ + + HG G + G + + I +
Sbjct: 129 EGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKA 188
Query: 119 FETSAQELGYPCPKDMNDRYVDVGFAELPG-MTRYGLRFSAADAYLTPIAGKRTNLYVLK 177
++ ++ G P KD G + P + +R AA +L P +R NL VL
Sbjct: 189 LMSAVEDRGVPTKKDFG-CGDPHGVSMFPNTLHEDQVRSDAAREWLLPNY-QRPNLQVLT 246
Query: 178 RSKVTKVIINDQNV---ATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPK 234
V KV+++ A GVE+ KG T V A EV+L AG+ + +L SGIG K
Sbjct: 247 GQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMK 306
Query: 235 AHLDEVKIPVKQDLRVGENL------KLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNR 288
+ L+ + I DL VG NL + ++ T +++
Sbjct: 307 SILEPLGIDTVVDLPVGLNLQDQTTATVRSRITSAGAGQGQAAWFATFNETFGDYSEKAH 366
Query: 289 IGPLSNAGLWSFT-----GYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEV 343
+ W+ G+ +T + + + + +++
Sbjct: 367 ELLNTKLEQWAEEAVARGGFHNTTALLIQYENYRDWI------------VNHNVAYSELF 414
Query: 344 QTAYVNLNKRTDMGVISMSLVNPKSCGKVTLKSADP-LAPPCIDTGILSEPEDLATLIRG 402
+ + + P + G V + DP L D DL
Sbjct: 415 LDTA-------GVASFDVWDLLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAA 467
Query: 403 TDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMG 462
T + + A++ + + +WT YI + + VGT M
Sbjct: 468 TQLARNISNSGAMQTYFAGET---IPGDNLAYDADLSAWTEYIPYHFRPNYHGVGTCSMM 524
Query: 463 NADDPNAVVTPDLKVKGIKGLRVADISVLPNAII---TQSDAISYMIGEKCADLVKTSYN 519
+ VV +V G++GLRV D S+ P + + Y + K +D + Y
Sbjct: 525 -PKEMGGVVDNAARVYGVQGLRVIDGSIPPT-QMSSHVM--TVFYAMALKISDAILEDYA 580
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 338 bits (870), Expect = e-110
Identities = 124/545 (22%), Positives = 196/545 (35%), Gaps = 66/545 (12%)
Query: 5 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 64
L S++D AY T GK LGGSS++ + G ++ + +
Sbjct: 58 LRNSKYDWAYKTTMV--RRDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEF 115
Query: 65 GYNGWGYDETLKYFVKSEDYR--SVIYNESKAVHGTQGYLPVGLFKNK-ENNIIREIFET 121
G W +D + Y KS Y +Y+ G G +P+ + E RE
Sbjct: 116 GGKEWTWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTK 175
Query: 122 SAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKV 181
+ + +G P +++ D G G R + + N+ ++
Sbjct: 176 AWKSMGQPLIENIYD-GEMDGLTHCCDTIYRGQRSGSFLF-----VKNKPNITIVPEVHS 229
Query: 182 TKVIINDQN-VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEV 240
++IIN+ + GV V + G + A++EVIL+ G +LL+LSGIGP L
Sbjct: 230 KRLIINEADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLMLSGIGPTRELSRH 289
Query: 241 KIPVKQDLR-VGENL------KLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLS 293
I D R VG+NL + L+ +V Y NR GP+
Sbjct: 290 GINTIVDSRHVGQNLMDHPGVPFVLRVKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPVG 349
Query: 294 NAGL-----------------WSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRA 336
+ L + + ++ P + H
Sbjct: 350 SGLLELVGFPRIDKYLEKDAEYRKAKAANGGKDPFSPLGQPHFELDF------------V 397
Query: 337 YDFNDEVQTAYVNLNKRTDMGVISMSLVNPKS-CGKVTLKSADPLAPPCIDTGILSEPED 395
F Q + + V+ + P S G+VTL SADP P I+ + D
Sbjct: 398 CMFGTAFQWHFPTPKTGDHLTVVVDLV-RPISDPGEVTLNSADPFQQPNINLNFFANDLD 456
Query: 396 LATLIRGTDYITR--LEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTS 453
+ + G + L + E + + + S + T
Sbjct: 457 IIAMREGIR-FSYDLLFKGEGFKDLVESEYPWEMPL------DSDKEMHRAVLDRCQTAF 509
Query: 454 NPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAII---TQSDAISYMIGEKC 510
+P GT + + VV P LKV GIK LRVAD SV+P I Q+ +GEKC
Sbjct: 510 HPTGTARLS-KNIDQGVVDPKLKVHGIKKLRVADASVIPI-IPDCRIQNSVY--AVGEKC 565
Query: 511 ADLVK 515
AD++K
Sbjct: 566 ADMIK 570
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 316 bits (813), Expect = e-102
Identities = 130/524 (24%), Positives = 205/524 (39%), Gaps = 79/524 (15%)
Query: 8 SEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYEN-FAKLGY 66
S +D Y EP N+ ++ K +GG S+ + + D + AK G
Sbjct: 67 SGYDWDYPIEPQ--ENG---NSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGA 121
Query: 67 NGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQEL 126
GW + + + E HG G + + + + ++
Sbjct: 122 TGWNAEAAWPLYKRLETNE--DAGPDAPHHGDSGPVHLM--NVPPKDPTGVALLDACEQA 177
Query: 127 GYPCPKDMNDRYVDVGFAELPGMTRY-GLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVI 185
G P K V G R G R S++ +Y+ P ++ N +L + +++
Sbjct: 178 GIPRAKFNTGTTVVNGANFFQINRRADGTRSSSSVSYIHP-IVEQENFTLLTGLRARQLV 236
Query: 186 INDQNVATGVEYV-NSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPV 244
+ TGV+ V ++ G T R+TA EV+L+ GAI +LL+LSGIGP AHL E I V
Sbjct: 237 FDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEV 296
Query: 245 KQDLR-VGENLKLNAQFTGPVMAFSAPLKRTVYSQ---EMVFKYLVNRIGPLSNAGLWSF 300
D VGE+L Q E V ++ + + W
Sbjct: 297 LVDSPGVGEHL-----------------------QDHPEGVVQFEAKQPMVAESTQWWEI 333
Query: 301 TGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVIS 360
+ T RPDL +H + M ++ Y + + N+
Sbjct: 334 GIFTPTEDGLDRPDLMMH---YGSVPFD-MNTLRHGYPTTENGFSLTPNVTH-------- 381
Query: 361 MSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPE--DLATLIRGTDYITRLEQTEAI-RL 417
+S G V L+S D P +D ++PE D+ ++ G + A+
Sbjct: 382 -----ARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEW 436
Query: 418 AGGTLMSLNLEACSQYPWRSTHS---WTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPD 474
G L P + YIR T +PVGTV MG +D + + P+
Sbjct: 437 TGREL----------SPGVEAQTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPE 486
Query: 475 LKVKGIKGLRVADISVLPNAII---TQSDAISYMIGEKCADLVK 515
L+VKG+ GLRVAD SV+P + + MIGE+CADL++
Sbjct: 487 LRVKGVTGLRVADASVMPE-HVTVNPNITVM--MIGERCADLIR 527
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 313 bits (805), Expect = e-101
Identities = 115/522 (22%), Positives = 180/522 (34%), Gaps = 84/522 (16%)
Query: 8 SEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GY 66
+D Y E AG R G+ +GGSS + + Y RG D++ + G
Sbjct: 70 RSYDWDYRTEAQ--AGTAGR--AHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGD 125
Query: 67 NGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQEL 126
WG+DE L F ED+ +HG G LP+ E + + F + L
Sbjct: 126 RRWGWDELLPVFQAIEDH----PLGGDGIHGKGGPLPIH-LPADEVSPLARAFIEAGASL 180
Query: 127 GYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVII 186
G P + N +G R G R +AADA+LT R NL +L S+V ++ +
Sbjct: 181 GLPRLEGHN-SGEMIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKL 239
Query: 187 NDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQ 246
+ N +E V + + V A +++L AGA+ + LL+ SGIGP LD +
Sbjct: 240 -EGNQVRSLEVV-GRQGSAEVFA-DQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLI 296
Query: 247 DLR-VGENLKLNAQFTGPVMAFSAPLKRTVYSQ----EMVFKYLVNRIGPLSNAGLWSFT 301
D+ +G NL Q Y + P S
Sbjct: 297 DMPDIGRNL-----------------------QDHLLGAGNLYAARKPVPPSRLQHSESM 333
Query: 302 GYI--DTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMG-- 357
Y+ D+ +P++ + V G
Sbjct: 334 AYMRADSFTAAGQPEIVVGCG----------------------VAPIVSESFPAPAAGSA 371
Query: 358 -VISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIR 416
+ + +P S G V + + ID L D R + + + +
Sbjct: 372 YSLLFGITHPTSRGSVRISGPELGDRLIIDPAYLQTGRDRERFRRALEASRTIGHRDELA 431
Query: 417 LAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLK 476
S +I T +P GT MG DP+AVV +L+
Sbjct: 432 -------GWRERELLPGTPNSAAEMDDFIARSVITHHHPCGTCRMGK--DPDAVVDANLR 482
Query: 477 VKGIKGLRVADISVLPNAII---TQSDAISYMIGEKCADLVK 515
+K + L V D S++PN + + + I E A
Sbjct: 483 LKALDNLFVVDASIMPN-LTAGPIHAAVL--AIAETFARQYH 521
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 298 bits (765), Expect = 5e-95
Identities = 84/532 (15%), Positives = 161/532 (30%), Gaps = 85/532 (15%)
Query: 10 FDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGW 69
+ + + + I + AG +GG ++V LY D+ GW
Sbjct: 68 LFESLFTDSN--PFWWCK--DITVFAGCLVGGGTSVNGALYWYPNDGDFS-----SSVGW 118
Query: 70 --GYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELG 127
+ Y K S T G + + N++ ++ + Q
Sbjct: 119 PSSWTNHAPYTSKLSSRLP-----STDHPSTDGQRYL----EQSFNVVSQLLK--GQGYN 167
Query: 128 YPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN 187
D + Y D F G R YL A R N V+ V+
Sbjct: 168 QATINDNPN-YKDHVFGYSAFDFLNGKRAGPVATYLQT-ALARPNFTFKTNVMVSNVVR- 224
Query: 188 DQNVATGVEYVNS---KGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPV 244
+ + GV+ + + VT VIL+AGA +++L SGIGP + V+
Sbjct: 225 NGSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNP 284
Query: 245 KQDLR-----------VGENL----KLNAQF--TGPVMAFSAPLKRTVYSQEMVFKYLVN 287
VG N +N F + + +YL N
Sbjct: 285 TAAAALPPQNQWINLPVGMNAQDNPSINLVFTHPSIDAYENWADVWSNPRPADAAQYLAN 344
Query: 288 RIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAY 347
+ G + A + + + + + + + F T
Sbjct: 345 QSGVFAGASPKLNFWRAYSGSDGFTRYAQGTVRPGAA-SVNSSLPYNASQIF-----TIT 398
Query: 348 VNLNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYIT 407
V L+ +S G++ + +A + L P D L++ +
Sbjct: 399 VYLSTG------------IQSRGRIGIDAALR--GTVLTPPWLVNPVDKTVLLQALHDVV 444
Query: 408 R-LEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADD 466
+ + + ++ + T +++ V + +G +
Sbjct: 445 SNIGSIPGLTMITPD------------VTQTLEEYVDAYDPATMNSNHWVSSTTIG-SSP 491
Query: 467 PNAVVTPDLKVKGIKGLRVADISVLPNAII---TQSDAISYMIGEKCADLVK 515
+AVV ++KV G L + D ++P+ + Q + E+ A +
Sbjct: 492 QSAVVDSNVKVFGTNNLFIVDAGIIPH-LPTGNPQGTLM--SAAEQAAAKIL 540
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 281 bits (722), Expect = 9e-89
Identities = 102/527 (19%), Positives = 168/527 (31%), Gaps = 101/527 (19%)
Query: 5 LSLSEFDHAYLAEPSQFA-GLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAK 63
+ + + +F G+ N R G+ LGG+S + +Y R + Y
Sbjct: 73 VYNLQQEDDGKTPVERFVSEDGIDNVR-----GRVLGGTSIINAGVYARANTSIYSASGV 127
Query: 64 LGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSA 123
W D + + ED ++ + F +
Sbjct: 128 ----DWDMDLVNQTYEWVEDTI--------VYKPNSQSW---------QSVTKTAFLEAG 166
Query: 124 QELGYPCPKDMNDRYVDVGFAELPGMT-RYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 182
+ + + + G + G T AAD L G NL V + V
Sbjct: 167 VHPNH----GFSLDHEE-GTR-ITGSTFDNKGTRHAADELLNK--GNSNNLRVGVHASVE 218
Query: 183 KVIINDQ--NVATGVEYVNSKG--ETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLD 238
K+I ++ ATGV Y +S G V + EVI++AG I QLLLLSG+GP+++L
Sbjct: 219 KIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLS 278
Query: 239 EVKIPVKQDLR-VGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGL 297
+ IPV VG+ L N P + + +V +G +SN
Sbjct: 279 SLNIPVVLSHPYVGQFLHDN-----PRNFINILPPNPIEP------TIVTVLG-ISNDFY 326
Query: 298 WSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMG 357
+ + +
Sbjct: 327 QCSFSSLP------FTTPPFGFF------------------------PSSSYPLPNSTFA 356
Query: 358 VISMSLVNPKSCGKVTLK-SADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAI- 415
+ + P S G +TLK S++ P + S DL+ + G I L T+A+
Sbjct: 357 HFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALK 416
Query: 416 RLAGGTLMSLNLEACSQYPWR----STHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVV 471
L + P ++ + R + + G ++G V+
Sbjct: 417 PYKVEDLPGVEGFNILGIPLPKDQTDDAAFETFCRESVASYWHYHGGCLVG------KVL 470
Query: 472 TPDLKVKGIKGLRVADISVLPNAII---TQSDAISYMIGEKCADLVK 515
D +V GI LRV D S P Q + M+G +
Sbjct: 471 DGDFRVTGINALRVVDGSTFPY-TPASHPQGFYL--MLGRYVGIKIL 514
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 78.3 bits (192), Expect = 2e-15
Identities = 70/485 (14%), Positives = 113/485 (23%), Gaps = 75/485 (15%)
Query: 34 TAGKGLGGSSAVQNILYQRGT-SYDYENFAKLGYNGWG--YDETLKYFVKSEDYRSVIYN 90
+ +GG S + T +D E L + E + + K+E Y
Sbjct: 156 AVTRVVGGMS----TAWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKAESY------ 205
Query: 91 ESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMT 150
T IR + Y +D + +
Sbjct: 206 -----FQTGTDQFKE--------SIRHNLVLNKLTEEYKGQRDFQQIPLAATRRSPTFVE 252
Query: 151 RYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN-VATGVEYVNSK-GETVRVT 208
+ +V+ N N + + G+ +
Sbjct: 253 WSSANTVFDLQNRPNTDAPEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIK 312
Query: 209 ANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLRVGENL-------------K 255
A +LTAGA+ N QLL+ SG G + P +G +
Sbjct: 313 A-DVYVLTAGAVHNTQLLVNSGFGQLGRPNPANPPELLPS-LGSYITEQSLVFCQTVMST 370
Query: 256 LNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARP-- 313
M YS N+ N + ++ Q P
Sbjct: 371 ELIDSVKSDMTIRGTPGELTYSVTYTPGASTNKHPDWWNEKVK---NHMMQHQEDPLPIP 427
Query: 314 --DLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISMSLVNPKSCGK 371
D E + Q +I R F+ ++ D + ++
Sbjct: 428 FEDPEPQVTTLFQPSHPWHTQIHRDA-FSYGAVQQSIDSRLIVDWRFFGRTEPKEENKLW 486
Query: 372 VTLKSADPLAPPCID-TGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEAC 430
+ K D P + GG L
Sbjct: 487 FSDKITDAYNMPQPTFDFRFPAGRTSKEAEDMMT-----DMCVMSAKIGGFL--PGSLPQ 539
Query: 431 SQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGN-ADDPNAVVTPDLKVKGIKGLRVADIS 489
P H GT MG + N V D +V G K L +
Sbjct: 540 FMEPGLVLH---------------LGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCG 584
Query: 490 VLPNA 494
+P A
Sbjct: 585 NIPTA 589
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 61.2 bits (148), Expect = 7e-10
Identities = 96/507 (18%), Positives = 159/507 (31%), Gaps = 164/507 (32%)
Query: 5 LSLSEFDHAYLA-----------EPSQFAGLGVRNARIK------ITAGKGL--GGSSAV 45
L L+EF++ YL L IK I A + +SA
Sbjct: 86 LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA- 144
Query: 46 QNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVG 105
L++ + + A G G G + YF E+ R +Y Y
Sbjct: 145 ---LFRAVGEGNAQLVAIFG--GQGNTDD--YF---EELRD-LYQT---------YHV-- 182
Query: 106 LFKNKENNIIREIFETSAQELGY--PCPKDMNDRY---VDV-GFAELPGMTRYGLRFSAA 159
++ ++ + SA+ L D + +++ + E P T
Sbjct: 183 --------LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT-------PD 227
Query: 160 DAYLT--PIAGKRTNLYVLKRSKVT-KVIINDQNVATGVEYVNSKGETVRVTANKEVILT 216
YL PI+ + L VT K++ G KG T ++T
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVTAKLL----GFTPGELRSYLKGATGHSQG----LVT 279
Query: 217 AGAIANAQ------------LLLLSGIGPKAHLD--EVKIP---VKQDLRVGENLKLNAQ 259
A AIA + +L IG + + +P ++ L E +
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP---- 335
Query: 260 FTGPVMAFSAPLKRTVYSQEMVFKYL--VNRIGP--------LSNAGLWSF--TGYIDTL 307
P M L + +QE V Y+ N P L N G + +G +L
Sbjct: 336 --SP-M-----LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN-GAKNLVVSGPPQSL 386
Query: 308 QN--------TARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTA-----YVNLNKRT 354
A L+ + F + R K+K + F V + L +
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIPFSE---R---KLKFSNRF-LPV-ASPFHSHL--LVPAS 436
Query: 355 DMGVISMSLVNPKSCGKVTLKSADPLAPPCIDT--GILSEPEDLATLIRGTDYITRLEQT 412
D+ I+ LV V+ + D + P DT G DL L R+
Sbjct: 437 DL--INKDLVK----NNVSFNAKD-IQIPVYDTFDG-----SDLRVL--SGSISERI--V 480
Query: 413 EAIRLAGGTLMSLNLEACSQYPWRSTH 439
+ I + + E +Q+ ++TH
Sbjct: 481 DCI-----IRLPVKWETTTQF--KATH 500
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 58.5 bits (141), Expect = 3e-09
Identities = 38/260 (14%), Positives = 76/260 (29%), Gaps = 45/260 (17%)
Query: 26 VRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYR 85
V ++ + G+G+GG S V + +E E +
Sbjct: 94 VNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEIL----PRVDSSEMYDRY------- 142
Query: 86 SVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAE 145
+ + ++ F++ E + A + G N E
Sbjct: 143 ---FPRANSMLRVNHIDT-KWFEDTEWYKFARVSREQAGKAGLGTVFVPNVYDFGYMQRE 198
Query: 146 LPG------------MTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNV-A 192
G + S YL A + + +V + A
Sbjct: 199 AAGEVPKSALATEVIYGNNHGKQSLDKTYL-AAALGTGKVTIQTLHQVKTIRQTKDGGYA 257
Query: 193 TGVEYVNSKGETV--RVTANKEVILTAGAIANAQLLLLSGI-GPKAHLDEVKIPVKQDLR 249
VE ++ G+ + + + + + L AG++ + +LL+ + G +L+
Sbjct: 258 LTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLVRARDTGTLPNLNS---------E 308
Query: 250 VGENLKLNAQFTGPVMAFSA 269
VG N G +M A
Sbjct: 309 VGAGWGPN----GNIMTARA 324
Score = 44.7 bits (105), Expect = 6e-05
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 20/87 (22%)
Query: 435 WRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNA 494
+R T +P+G ++G +V G K L V D S++P +
Sbjct: 423 YRYDLFGTQLKAFADDFCYHPLGGCVLG------KATDDYGRVAGYKNLYVTDGSLIPGS 476
Query: 495 I-------ITQSDAISYMIGEKCADLV 514
+ IT + E+ + +
Sbjct: 477 VGVNPFVTIT-------ALAERNVERI 496
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 54.0 bits (129), Expect = 7e-08
Identities = 41/236 (17%), Positives = 70/236 (29%), Gaps = 31/236 (13%)
Query: 10 FDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGW 69
F + R + IK+ G+G+GG S V + +E
Sbjct: 83 FGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEILPSV---D 139
Query: 70 GYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYP 129
+ KYF ++ G F++ E +AQ G+
Sbjct: 140 SNEMYNKYFPRAN-----------TGLGVNNIDQ-AWFESTEWYKFARTGRKTAQRSGFT 187
Query: 130 CPKDMNDRYVDVGFAELPGMTR------------YGLRFSAADAYLTPIAGKRTNLYVLK 177
N + E G + S YL A L +
Sbjct: 188 TAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYL-AQAAATGKLTITT 246
Query: 178 RSKVTKVII-NDQNVATGVEYVNSKGETV--RVTANKEVILTAGAIANAQLLLLSG 230
+VTKV + +E ++ +G V +V V AG++ ++LL+
Sbjct: 247 LHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLLVSMK 302
Score = 39.0 bits (90), Expect = 0.003
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 451 TTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAI 495
T +P+G V++ ++ GL V D S++P +
Sbjct: 444 FTYHPLGGVLLN------KATDNFGRLPEYPGLYVVDGSLVPGNV 482
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 2e-05
Identities = 75/522 (14%), Positives = 140/522 (26%), Gaps = 150/522 (28%)
Query: 1 MSSVLSLSEFDHAYLAEPSQFAGLGVRNAR--IKITAGKGLGGSSAVQNIL-------YQ 51
S+LS E DH + V K VQ + Y+
Sbjct: 42 PKSILSKEEIDHI-IMSKDA-----VSGTLRLFWTLLSK---QEEMVQKFVEEVLRINYK 92
Query: 52 ----------RGTSYDYENFAKLGYNGWGYDETL-KYFVKSEDY----RSVIYNESKA-- 94
R S + + + ++ KY V R + A
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 95 --VHGTQGY------LPVGLFKNKENNIIREIF------ETSAQELGYPCPKDMNDRY-- 138
+ G G L V L + + +IF S + + + +
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV----LEMLQKLLYQ 208
Query: 139 VDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIND-QNVATGVE 196
+D + + LR + A L L K + +++ + QN
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAEL-------RRLLKSKPYENCLLVLLNVQNAKA-WN 260
Query: 197 YVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLRVGENLKL 256
N + + T K+V A + LD + + D E L
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHIS----------LDHHSMTLTPD----EVKSL 306
Query: 257 NAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGLW-SFTGYIDTLQNTARPDL 315
++ L R E++ P + + S + T N +
Sbjct: 307 LLKYLD--CRPQD-LPR-----EVL------TTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 316 EIHLLYFQQNDIRNMC-------KIKRAYD----FNDEVQ-TAYV------NLNKRTDMG 357
+ + I + ++ +D F + ++ K M
Sbjct: 353 D------KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 358 VI----SMSLVN--PKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQ 411
V+ SLV PK +++ P I + + E+ L R + ++
Sbjct: 407 VVNKLHKYSLVEKQPKE-STISI--------PSIYLELKVKLENEYALHR-----SIVDH 452
Query: 412 TEAIR-LAGGTLMSLNLEACSQYPWRSTHSWTCYI-RHLTTT 451
+ L+ L+ QY + +I HL
Sbjct: 453 YNIPKTFDSDDLIPPYLD---QY-------FYSHIGHHLKNI 484
Score = 41.8 bits (97), Expect = 6e-04
Identities = 65/391 (16%), Positives = 124/391 (31%), Gaps = 114/391 (29%)
Query: 26 VRNARI--------KI---TAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDET 74
V+NA+ KI T K V + L T++ + + DE
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQ------VTDFLSAATTTHISLDHHSMTLT---PDEV 303
Query: 75 LKYF-----VKSEDYRSVIYNESKAVHGTQGYLPVGL----------------FKNKENN 113
+ +D E + P L +K+ +
Sbjct: 304 KSLLLKYLDCRPQDLPR----EVLTTN------PRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 114 IIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNL 173
+ I E+S L P + + + P A++ I L
Sbjct: 354 KLTTIIESSLNVLE---PAEYRKMFDR--LSVFP-----------PSAHIPTIL-----L 392
Query: 174 YVL---KRSKVTKVIIN--------DQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 222
++ V++N ++ + S ++V E L + +
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 223 AQLLLLSGIGPKAHLDEVKIPVKQD----LRVGENLKLNAQFTGPVMAFSAPLKRTVYSQ 278
+ PK + IP D +G +LK N + + F R V+
Sbjct: 453 YNI-------PKTFDSDDLIPPYLDQYFYSHIGHHLK-NIEHPERMTLF-----RMVF-- 497
Query: 279 EMVFKYLVNRIGPLSNAGLWSFTGYI-DTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAY 337
+ F++L +I S A W+ +G I +TLQ L+ + Y ND + +
Sbjct: 498 -LDFRFLEQKIRHDSTA--WNASGSILNTLQ-----QLKFYKPYICDNDPKYERLVNAIL 549
Query: 338 DFNDEVQTAYVNLNKRTDMGVISMSLVNPKS 368
DF +++ + +K TD ++ ++L+
Sbjct: 550 DFLPKIEENLIC-SKYTD--LLRIALMAEDE 577
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 43.1 bits (102), Expect = 2e-04
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 175 VLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAI-ANAQLL 226
S+V K+++ND + G + A K V+L G N +++
Sbjct: 267 TRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGA-KSVVLATGGYGMNKEMI 318
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 42.8 bits (101), Expect = 3e-04
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 169 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAG 218
+ N+ + ++ +V+ +D+ G+ V A VIL G
Sbjct: 266 VKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKA-DAVILATG 314
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 41.2 bits (97), Expect = 7e-04
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 175 VLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAI-ANAQLL 226
+ S+V +++ + TGV + A V++ AG N + +
Sbjct: 272 IRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKA-DAVVIAAGGFAKNNERV 323
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.6 bits (86), Expect = 0.003
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 245 KQDLRVGEN-LKLNAQFTGPVMAFSAPLK 272
KQ L+ + LKL A + P +A A ++
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 38.8 bits (91), Expect = 0.003
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 175 VLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAG 218
+V ++ +D G+ G+ V V A + V+L G
Sbjct: 219 AEYDMRVQTLVTDDTGRVVGIVAKQ-YGKEVAVRARRGVVLATG 261
>1j1l_A Pirin; beta sandwich, cupin, iron, metatl binding protein; 2.10A
{Homo sapiens} SCOP: b.82.1.12 PDB: 3acl_A*
Length = 290
Score = 30.6 bits (70), Expect = 1.0
Identities = 9/64 (14%), Positives = 20/64 (31%), Gaps = 8/64 (12%)
Query: 167 AGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 226
G + +Y + V I + +E T + V + + +
Sbjct: 188 KGWTSFIYTISGD----VYIGPDDAQQKIE----PHHTAVLGEGDSVQVENKDPKRSHFV 239
Query: 227 LLSG 230
L++G
Sbjct: 240 LIAG 243
>2vfx_A Mitotic spindle assembly checkpoint protein MAD2A; CDC2, nucleus,
mitosis, anaphase, cell cycle, CE division, spindle
checkpoint; HET: PE4 PE3; 1.95A {Homo sapiens} PDB:
2qyf_A 2v64_A 1s2h_A 1go4_A 3gmh_A 1klq_A 2v64_D 1duj_A
Length = 206
Score = 28.9 bits (64), Expect = 3.1
Identities = 20/134 (14%), Positives = 44/134 (32%), Gaps = 16/134 (11%)
Query: 44 AVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHG--TQGY 101
+ +ILYQRG Y E F ++ G + + N + + +
Sbjct: 28 GINSILYQRGI-YPSETFTRVQKYG-----LTLLVTTDLELIKYLNNVVEQLKDWLYKSS 81
Query: 102 LP--VGLFKNKENNIIRE--IFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFS 157
+ V + N E+ + E F+ + + + E+ + R + +
Sbjct: 82 VQKLVVVISNIESGEVLERWQFDIESDKTAKDDSAPREKSQKAI-QDEIRSVIR---QIT 137
Query: 158 AADAYLTPIAGKRT 171
A +L + +
Sbjct: 138 ATVTFLPLLEVSCS 151
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic
helix-loop-helix motif, BHLH motif, lambd repressor-like
DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus
aurantiacus}
Length = 292
Score = 28.4 bits (64), Expect = 5.4
Identities = 6/20 (30%), Positives = 8/20 (40%), Gaps = 3/20 (15%)
Query: 394 EDLATL--IRGTDYITRLEQ 411
E LA + I R+E
Sbjct: 29 EVLAERTQL-PKRTIERIEN 47
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP:
b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Length = 396
Score = 27.9 bits (63), Expect = 8.6
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 23/74 (31%)
Query: 195 VEYVNSKGETVRVTANK----------------EVILTAGAIANAQLL-LLSGIGPKAHL 237
E V +G+ + V EV+L G I Q + +L +G +
Sbjct: 119 QEMVKREGDKIYVLRPVAPGQNIAFTGEDVKKGEVVLRKGTILRPQDVAMLKALG----I 174
Query: 238 DEVKIPVKQDLRVG 251
+V PVK +VG
Sbjct: 175 KKV--PVKVKPKVG 186
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 27.7 bits (61), Expect = 9.1
Identities = 17/108 (15%), Positives = 30/108 (27%), Gaps = 13/108 (12%)
Query: 379 PLAPPCIDTGILSEPEDLATLIRG-------------TDYITRLEQTEAIRLAGGTLMSL 425
L C G L L+ G + T + G +
Sbjct: 12 ILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQ 71
Query: 426 NLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTP 473
+ SQ W S ++TC + + T + N +A ++
Sbjct: 72 SELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSR 119
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis
MOEA protein; MOEA molybdopterin, MOCF biosynthesis;
2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1
c.57.1.2
Length = 402
Score = 27.9 bits (63), Expect = 9.8
Identities = 10/74 (13%), Positives = 22/74 (29%), Gaps = 23/74 (31%)
Query: 195 VEYVNSKGETVRVTANK----------------EVILTAGAIANAQLL-LLSGIGPKAHL 237
E V + + +++ G + LLS +G +
Sbjct: 117 FEDVERVNGEILIYKPAYPGLGVMKKGIDIEKGRLLVKKGERLGFKQTALLSAVG----I 172
Query: 238 DEVKIPVKQDLRVG 251
++V V + +V
Sbjct: 173 NKV--KVFRKPKVA 184
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.390
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,772,815
Number of extensions: 474002
Number of successful extensions: 967
Number of sequences better than 10.0: 1
Number of HSP's gapped: 885
Number of HSP's successfully gapped: 39
Length of query: 522
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 424
Effective length of database: 3,965,535
Effective search space: 1681386840
Effective search space used: 1681386840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)