BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14408
(720 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 149/309 (48%), Gaps = 37/309 (11%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG--GDTPIHSRIPGMS-SVLSLSEFDHA 490
FD ++VGA AG V+A RL+E + VL++EAG + + + P ++ ++ S FD
Sbjct: 3 FDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWN 62
Query: 491 YLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYD 549
Y + A G I G+ LGGSS+V ++ RG++ D++ +A + G GW +D
Sbjct: 63 Y----TTTAQAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWD 118
Query: 550 ETLKYFVKSE------DYRSVIYNESKAVHGTQGYLPVGL--FKNKENNIIREIFETSAQ 601
++ K+E D + AVHGT G + + L F ++ + + ++
Sbjct: 119 NIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQSE 178
Query: 602 E------LGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKR 655
E +G P ++ VG G R S++ AYL P A R NL VL
Sbjct: 179 EFFFNPDMGTGHPLGISWSIASVG---------NGQRSSSSTAYLRP-AQSRPNLSVLIN 228
Query: 656 SKVTKVI----INDQNVATGVEYVNSKGE-TVRVTANKEVILTAGAIANAQLLLLSGIGP 710
++VTK++ N VEY +G T V A KEV+L+AG++ LL LSGIG
Sbjct: 229 AQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGD 288
Query: 711 KAHLDEVKI 719
+ L V I
Sbjct: 289 ENDLSSVGI 297
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 97/295 (32%), Positives = 140/295 (47%), Gaps = 31/295 (10%)
Query: 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRI--PGMSSVLSLSEFDHAYL 492
DI+IVG +AG +LA RLSE +VLLIEA G+ P I P L +D Y
Sbjct: 19 DIVIVGGGSAGSLLAARLSEDPDSRVLLIEA-GEEPTDPDIWNPAAWPALQGRSYDWDYR 77
Query: 493 AEP-SQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDE 550
E + AG AR G+ +GGSS + + Y RG D++ + G WG+DE
Sbjct: 78 TEAQAGTAGRAHHWAR-----GRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDE 132
Query: 551 TLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKD 610
L F ED+ G LP+ L ++ + + R E A LG P +
Sbjct: 133 LLPVFQAIEDHPLGGDGIHG----KGGPLPIHLPADEVSPLARAFIEAGAS-LGLPRLEG 187
Query: 611 MNDRYVDVGFAELPGMT------RYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN 664
N E+ G+T R G R +AADA+LT R NL +L S+V ++ +
Sbjct: 188 HNS-------GEMIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLE 240
Query: 665 DQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI 719
V + +E V +G + V A+ +++L AGA+ + LL+ SGIGP LD +
Sbjct: 241 GNQVRS-LEVVGRQG-SAEVFAD-QIVLCAGALESPALLMRSGIGPHDVLDAAGV 292
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 137/310 (44%), Gaps = 32/310 (10%)
Query: 430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG----GDTPIHSRIPGMSSVLSLS 485
+G +D II G G +A +L+E +KVL+IE G D I P + +
Sbjct: 21 AGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIED-PNAYGQIFGT 79
Query: 486 EFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYN 544
D YL P + N I AGKGLGGS+ + + R +++ K+ G
Sbjct: 80 TVDQNYLTVPL------INNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGME 133
Query: 545 GWGYDETLKYFVKSEDYRSVIYNESKA-------VHGTQGYLPVGLFKNKE--NNIIREI 595
GW +D +Y K+E R+ + A HGT G + G N + + I++ +
Sbjct: 134 GWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKAL 193
Query: 596 FETSAQELGYPCPKDM---NDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYV 652
T LG P +D + R V + + + +R AA A+L P +R+NL +
Sbjct: 194 MNT-VSALGVPVQQDFLCGHPRGVSM---IMNNLDENQVRVDAARAWLLPNY-QRSNLEI 248
Query: 653 LKRSKVTKVIINDQNV---ATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 709
L V KV+ A GV + +K V A EV+L AG+ + +L SGIG
Sbjct: 249 LTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIG 308
Query: 710 PKAHLDEVKI 719
K+ LD+ +
Sbjct: 309 LKSVLDQANV 318
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 136/299 (45%), Gaps = 31/299 (10%)
Query: 431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGM---SSVLSL--S 485
G FD +IVG AG +A RL+E ++ VL++EAG P IP + SS + L S
Sbjct: 4 GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNP--EDIPEITTPSSAMDLRNS 61
Query: 486 EFDHAY---LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLG 542
++D AY + + + N R GK LGGSS++ + G ++ + + G
Sbjct: 62 KYDWAYKTTMVRRDDYERIEKPNTR-----GKTLGGSSSLNYFTWVPGHKATFDQWEEFG 116
Query: 543 YNGWGYDETLKYFVKSEDYRS--VIYNESKAVHGTQGYLPVGLFK-NKENNIIREIFETS 599
W +D + Y KS Y +Y+ G G +P+ + E RE +
Sbjct: 117 GKEWTWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKA 176
Query: 600 AQELGYPCPKDMNDRYVDVGFAELPGMTRYG---LRFSAADAYLTPIAGKRTNLYVLKRS 656
+ +G P +++ D E+ G+T R + ++L + N+ ++
Sbjct: 177 WKSMGQPLIENIYD-------GEMDGLTHCCDTIYRGQRSGSFL--FVKNKPNITIVPEV 227
Query: 657 KVTKVIINDQN-VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHL 714
++IIN+ + GV V + G + A++EVIL+ G +LL+LSGIGP L
Sbjct: 228 HSKRLIINEADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLMLSGIGPTREL 286
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 136/313 (43%), Gaps = 37/313 (11%)
Query: 430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG----DTPIHSRIPGMSSVLSLS 485
SG D II G G A RL+E ++ VL+IE+G PI + + S
Sbjct: 16 SGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFG-S 74
Query: 486 EFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYN 544
DHAY + L N I +G GLGGS+ V + R +++ + G
Sbjct: 75 SVDHAY-----ETVELATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNE 129
Query: 545 GWGYDETLKYFVKSEDYRSVIYNESKA-------VHGTQGYLPVGLFKNKEN-NIIREIF 596
GW +D Y +++E R+ + A HG G + G ++ + I +
Sbjct: 130 GWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKAL 189
Query: 597 ETSAQELGYPCPKDMNDRYVDVGFAELPGMTRY-------GLRFSAADAYLTPIAGKRTN 649
++ ++ G P KD G + G++ + +R AA +L P +R N
Sbjct: 190 MSAVEDRGVPTKKDF-------GCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNY-QRPN 241
Query: 650 LYVLKRSKVTKVIINDQNV---ATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLS 706
L VL V KV+++ A GVE+ KG T V A EV+L AG+ + +L S
Sbjct: 242 LQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYS 301
Query: 707 GIGPKAHLDEVKI 719
GIG K+ L+ + I
Sbjct: 302 GIGMKSILEPLGI 314
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 137/296 (46%), Gaps = 25/296 (8%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSE--FDHAY 491
FD I+VG +AG +A RLSE ++ V L+EAG D + + + L E +D Y
Sbjct: 14 FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDY 73
Query: 492 LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENF-AKLGYNGWGYDE 550
EP + +R+AR K+ +GG S+ + + D + + AK G GW +
Sbjct: 74 PIEPQENGNSFMRHARAKV-----MGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEA 128
Query: 551 TLKYFVKSEDYRSVIYNESKA----VHGTQGYLPVGLFKNKENNIIREIFETSAQELGYP 606
Y+ + NE HG G PV L + + ++ G P
Sbjct: 129 AWPL------YKRLETNEDAGPDAPHHGDSG--PVHLMNVPPKDPTGVALLDACEQAGIP 180
Query: 607 CPKDMNDRYVDVGFAELPGMTRY--GLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN 664
K N V A + R G R S++ +Y+ PI ++ N +L + +++ +
Sbjct: 181 RAK-FNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIV-EQENFTLLTGLRARQLVFD 238
Query: 665 DQNVATGVEYVNSK-GETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI 719
TGV+ V+S G T R+TA EV+L+ GAI +LL+LSGIGP AHL E I
Sbjct: 239 ADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGI 294
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 137/296 (46%), Gaps = 25/296 (8%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSE--FDHAY 491
FD I+VG +AG +A RLSE ++ V L+EAG D + + + L E +D Y
Sbjct: 14 FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDY 73
Query: 492 LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENF-AKLGYNGWGYDE 550
EP + +R+AR K+ +GG S+ + + D + + AK G GW +
Sbjct: 74 PIEPQENGNSFMRHARAKV-----MGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEA 128
Query: 551 TLKYFVKSEDYRSVIYNESKA----VHGTQGYLPVGLFKNKENNIIREIFETSAQELGYP 606
Y+ + NE HG G PV L + + ++ G P
Sbjct: 129 AWPL------YKRLETNEDAGPDAPHHGDSG--PVHLMNVPPKDPTGVALLDACEQAGIP 180
Query: 607 CPKDMNDRYVDVGFAELPGMTRY--GLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN 664
K N V A + R G R S++ +Y+ PI ++ N +L + +++ +
Sbjct: 181 RAK-FNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIV-EQENFTLLTGLRARQLVFD 238
Query: 665 DQNVATGVEYVNSK-GETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI 719
TGV+ V+S G T R+TA EV+L+ GAI +LL+LSGIGP AHL E I
Sbjct: 239 ADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGI 294
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 136/296 (45%), Gaps = 25/296 (8%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSE--FDHAY 491
FD I+VG +AG +A RLSE ++ V L+EAG D + + + L E +D Y
Sbjct: 14 FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDY 73
Query: 492 LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENF-AKLGYNGWGYDE 550
EP + +R+AR K+ +GG S+ + D + + AK G GW +
Sbjct: 74 PIEPQENGNSFMRHARAKV-----MGGCSSHNACIAFWAPREDLDEWEAKYGATGWNAEA 128
Query: 551 TLKYFVKSEDYRSVIYNESKA----VHGTQGYLPVGLFKNKENNIIREIFETSAQELGYP 606
Y+ + NE HG G PV L + + ++ G P
Sbjct: 129 AWPL------YKRLETNEDAGPDAPHHGDSG--PVHLMNVPPKDPTGVALLDACEQAGIP 180
Query: 607 CPKDMNDRYVDVGFAELPGMTRY--GLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN 664
K N V A + R G R S++ +Y+ PI ++ N +L + +++ +
Sbjct: 181 RAK-FNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIV-EQENFTLLTGLRARQLVFD 238
Query: 665 DQNVATGVEYVNSK-GETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI 719
TGV+ V+S G T R+TA EV+L+ GAI +LL+LSGIGP AHL E I
Sbjct: 239 ADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGI 294
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 126/295 (42%), Gaps = 46/295 (15%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLSLSEFDHAYL 492
+D +IVG +GC LA LSE KVL++E G T + + V +L + D
Sbjct: 27 YDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKT 84
Query: 493 AEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETL 552
+ G+ N R G+ LGG+S + +Y R + Y + G + W D
Sbjct: 85 PVERFVSEDGIDNVR-----GRVLGGTSIINAGVYARANTSIY---SASGVD-WDMDLVN 135
Query: 553 KYFVKSEDYRSVIY---NESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPK 609
+ + ED +++Y ++S +L G+ N G+
Sbjct: 136 QTYEWVED--TIVYKPNSQSWQSVTKTAFLEAGVHPNH----------------GFSLDH 177
Query: 610 DMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQ--N 667
+ R F TR+ AAD L G NL V + V K+I ++
Sbjct: 178 EEGTRITGSTFDNKG--TRH-----AADELLN--KGNSNNLRVGVHASVEKIIFSNAPGL 228
Query: 668 VATGVEYVNSKG--ETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720
ATGV Y +S G V + EVI++AG I QLLLLSG+GP+++L + IP
Sbjct: 229 TATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIP 283
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 126/295 (42%), Gaps = 46/295 (15%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLSLSEFDHAYL 492
+D +IVG +GC LA LSE KVL++E G T + + V +L + D
Sbjct: 27 YDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKT 84
Query: 493 AEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETL 552
+ G+ N R G+ LGG+S + +Y R + Y + G + W D
Sbjct: 85 PVERFVSEDGIDNVR-----GRVLGGTSIINAGVYARANTSIY---SASGVD-WDMDLVN 135
Query: 553 KYFVKSEDYRSVIY---NESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPK 609
+ + ED +++Y ++S +L G+ N G+
Sbjct: 136 QTYEWVED--TIVYKPNSQSWQSVTKTAFLEAGVHPNH----------------GFSLDH 177
Query: 610 DMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQ--N 667
+ R F TR+ AAD L G NL V + V K+I ++
Sbjct: 178 EEGTRITGSTFDNKG--TRH-----AADELLNK--GNSNNLRVGVHASVEKIIFSNAPGL 228
Query: 668 VATGVEYVNSKG--ETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720
ATGV Y +S G V + EVI++AG I QLLLLSG+GP+++L + IP
Sbjct: 229 TATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIP 283
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 125/296 (42%), Gaps = 47/296 (15%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLSLSEFDHAYL 492
+D +IVG +GC LA LSE KVL++E G T + + + +L + D
Sbjct: 27 YDYVIVGGGTSGCPLAATLSE--KYKVLVLERGTLPTAYPNLLTSDGFIYNLQQEDDGQT 84
Query: 493 AEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETL 552
+G G+ + R G+ LGG+S + +Y R + + F+ G W D
Sbjct: 85 PVERFVSGDGIDDVR-----GRVLGGTSMINAGVYARANT---KIFSASGIE-WDMDLVN 135
Query: 553 KYFVKSEDYRSVIYNESKAVHGT---QGYLPVGLFKNKENNIIREIFETSAQELGYPCPK 609
+ + ED +++Y K + +L G+ + G+
Sbjct: 136 QTYDWVED--TIVYKPDKQAWQSLTKTAFLEAGVLPDN----------------GFSLDH 177
Query: 610 DMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN-- 667
+ R F TR+ A+D L G NL V + V K+I + +
Sbjct: 178 EAGTRLTGSTFDN--NGTRH-----ASDELLN--KGDPNNLRVAVHASVEKIIFSSNSSG 228
Query: 668 -VATGVEYVNSKG--ETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720
A GV Y +S G V EVI++AG I + QLLLLSG+GP+++L + IP
Sbjct: 229 VTAIGVIYKDSNGTPHQAFVRGEGEVIVSAGPIGSPQLLLLSGVGPESYLSSLNIP 284
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 119/302 (39%), Gaps = 45/302 (14%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSR---IPGMSSVLSLSEFDHA 490
+D IIVGA G + A+RLSE KVLL+E GG + + + ++ L++FD
Sbjct: 8 YDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKFD-- 64
Query: 491 YLAEPSQFAGLGVRN------ARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGY- 543
P F L + I + AG +GG ++V LY D+ + +G+
Sbjct: 65 ---IPGLFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFS--SSVGWP 119
Query: 544 NGWG----YDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETS 599
+ W Y L + S D+ S Q YL + N++ ++ +
Sbjct: 120 SSWTNHAPYTSKLSSRLPSTDHPST---------DGQRYL------EQSFNVVSQLLK-- 162
Query: 600 AQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 659
Q D N Y D F G R YL A R N V+
Sbjct: 163 GQGYNQATIND-NPNYKDHVFGYSAFDFLNGKRAGPVATYLQ-TALARPNFTFKTNVMVS 220
Query: 660 KVIINDQNVATGVEYVN---SKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDE 716
V+ N + GV+ + + VT VIL+AGA +++L SGIGP +
Sbjct: 221 NVVRNGSQI-LGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQT 279
Query: 717 VK 718
V+
Sbjct: 280 VQ 281
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
Length = 541
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 119/302 (39%), Gaps = 45/302 (14%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSR---IPGMSSVLSLSEFDHA 490
+D IIVGA G + A+RLSE KVLL+E GG + + + ++ L++FD
Sbjct: 3 YDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKFD-- 59
Query: 491 YLAEPSQFAGLGVRN------ARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGY- 543
P F L + I + AG +GG ++V LY D+ + +G+
Sbjct: 60 ---IPGLFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFS--SSVGWP 114
Query: 544 NGWG----YDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETS 599
+ W Y L + S D+ S Q YL + N++ ++ +
Sbjct: 115 SSWTNHAPYTSKLSSRLPSTDHPST---------DGQRYL------EQSFNVVSQLLK-- 157
Query: 600 AQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 659
Q D N Y D F G R YL A R N V+
Sbjct: 158 GQGYNQATIND-NPNYKDHVFGYSAFDFLNGKRAGPVATYLQ-TALARPNFTFKTNVMVS 215
Query: 660 KVIINDQNVATGVEYVN---SKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDE 716
V+ N + GV+ + + VT VIL+AGA +++L SGIGP +
Sbjct: 216 NVVRNGSQI-LGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQT 274
Query: 717 VK 718
V+
Sbjct: 275 VQ 276
>pdb|3HDQ|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDY|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HE3|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3MJ4|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
Length = 397
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIE 464
FD +IVGA AG VLA RL+ S +VL+++
Sbjct: 30 FDYLIVGAGFAGSVLAERLAS-SGQRVLIVD 59
>pdb|3K30|A Chain A, Histamine Dehydrogenase From Nocardiodes Simplex
pdb|3K30|B Chain B, Histamine Dehydrogenase From Nocardiodes Simplex
Length = 690
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 436 IIIVGASAAGCVLANRLSEVSSLKVLLIEAG----GDTPIHSRIPGMSSVLSLSEFDHAY 491
+++VGA +G A L V V+L EAG G S +PG+S+ + E+ A
Sbjct: 394 VLVVGAGPSGLEAARALG-VRGYDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAV 452
Query: 492 LAE 494
LAE
Sbjct: 453 LAE 455
>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
pdb|4AOX|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 416 RSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG---GDTPIH 472
RSV+ PD T S +D+++VGA AG +R L V EA G
Sbjct: 7 RSVVTAPDATTGTTS---YDVVVVGAGIAGLYAIHRFRS-QGLTVRAFEAASGVGGVWYW 62
Query: 473 SRIPGMSSVLSLSEFDHAYLAEPSQ 497
+R PG + ++ +++ E Q
Sbjct: 63 NRYPGARCDVESIDYSYSFSPELEQ 87
>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 416 RSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG---GDTPIH 472
RSV+ PD T S +D+++VGA AG +R L V EA G
Sbjct: 7 RSVVTAPDATTGTTS---YDVVVVGAGIAGLYAIHRFRS-QGLTVRAFEAASGVGGVWYW 62
Query: 473 SRIPGMSSVLSLSEFDHAYLAEPSQ 497
+R PG + ++ +++ E Q
Sbjct: 63 NRYPGARCDVESIDYSYSFSPELEQ 87
>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 416 RSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG---GDTPIH 472
RSV+ PD T S +D+++VGA AG +R L V EA G
Sbjct: 7 RSVVTAPDATTGTTS---YDVVVVGAGIAGLYAIHRFRS-QGLTVRAFEAASGVGGVWYW 62
Query: 473 SRIPGMSSVLSLSEFDHAYLAEPSQ 497
+R PG + ++ +++ E Q
Sbjct: 63 NRYPGARCDVESIDYSYSFSPELEQ 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,390,944
Number of Sequences: 62578
Number of extensions: 891509
Number of successful extensions: 1803
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1642
Number of HSP's gapped (non-prelim): 76
length of query: 720
length of database: 14,973,337
effective HSP length: 106
effective length of query: 614
effective length of database: 8,340,069
effective search space: 5120802366
effective search space used: 5120802366
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)