Query psy14408
Match_columns 720
No_of_seqs 250 out of 1767
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 19:06:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14408.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14408hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 100.0 3.9E-37 8.4E-42 347.4 20.3 288 428-720 52-340 (623)
2 PF00732 GMC_oxred_N: GMC oxid 100.0 2E-35 4.4E-40 309.1 18.0 273 434-720 1-280 (296)
3 TIGR01810 betA choline dehydro 100.0 2.8E-34 6.1E-39 326.2 22.9 271 435-720 1-277 (532)
4 PRK02106 choline dehydrogenase 100.0 6.9E-34 1.5E-38 325.0 23.5 275 432-720 4-284 (560)
5 COG2303 BetA Choline dehydroge 100.0 1.9E-30 4.1E-35 296.1 22.0 280 430-720 4-288 (542)
6 PLN02785 Protein HOTHEAD 99.9 2.7E-26 5.9E-31 264.2 19.8 252 431-720 53-312 (587)
7 TIGR02462 pyranose_ox pyranose 99.8 2E-18 4.3E-23 197.1 17.1 245 434-710 1-291 (544)
8 PF01266 DAO: FAD dependent ox 99.6 3.7E-15 8E-20 156.8 16.3 62 639-709 152-213 (358)
9 PRK11101 glpA sn-glycerol-3-ph 99.6 1.9E-14 4.1E-19 165.2 19.9 85 617-708 135-220 (546)
10 TIGR03329 Phn_aa_oxid putative 99.6 1.9E-14 4.1E-19 161.5 16.5 43 426-468 17-60 (460)
11 PRK07121 hypothetical protein; 99.6 1.6E-13 3.4E-18 155.3 20.3 66 638-705 181-246 (492)
12 PF00890 FAD_binding_2: FAD bi 99.5 1.8E-13 3.9E-18 150.5 17.2 64 638-705 145-209 (417)
13 PRK12835 3-ketosteroid-delta-1 99.5 3.1E-13 6.8E-18 156.4 19.0 66 638-705 217-282 (584)
14 TIGR01373 soxB sarcosine oxida 99.5 4E-13 8.6E-18 147.5 18.7 62 639-709 189-250 (407)
15 PRK12409 D-amino acid dehydrog 99.5 5.4E-13 1.2E-17 146.6 19.6 35 434-469 2-36 (410)
16 PRK00711 D-amino acid dehydrog 99.5 6.5E-13 1.4E-17 145.7 18.4 122 574-708 133-266 (416)
17 PTZ00383 malate:quinone oxidor 99.5 8.1E-13 1.8E-17 150.3 19.6 54 648-709 228-283 (497)
18 TIGR01377 soxA_mon sarcosine o 99.5 9.3E-13 2E-17 142.4 18.8 61 639-709 150-210 (380)
19 PRK12844 3-ketosteroid-delta-1 99.5 7.1E-13 1.5E-17 152.7 18.8 65 638-705 212-276 (557)
20 PRK12837 3-ketosteroid-delta-1 99.5 9.1E-13 2E-17 150.2 19.4 64 638-704 178-241 (513)
21 PRK07573 sdhA succinate dehydr 99.5 6.9E-13 1.5E-17 155.1 18.7 57 640-699 176-233 (640)
22 PRK08274 tricarballylate dehyd 99.5 1.2E-12 2.7E-17 146.6 20.0 68 639-709 136-203 (466)
23 PRK12845 3-ketosteroid-delta-1 99.5 1.2E-12 2.5E-17 151.2 19.8 64 639-705 222-285 (564)
24 PRK06481 fumarate reductase fl 99.5 8.2E-13 1.8E-17 150.4 17.5 60 639-701 195-254 (506)
25 PRK11259 solA N-methyltryptoph 99.5 1.7E-12 3.8E-17 140.1 17.7 36 432-468 2-37 (376)
26 PRK06452 sdhA succinate dehydr 99.4 1.8E-12 3.9E-17 149.6 17.9 50 647-698 148-198 (566)
27 TIGR01320 mal_quin_oxido malat 99.4 3.4E-12 7.3E-17 144.8 19.4 128 575-710 106-251 (483)
28 COG0579 Predicted dehydrogenas 99.4 2.5E-12 5.4E-17 143.2 18.0 208 432-710 2-222 (429)
29 PRK08958 sdhA succinate dehydr 99.4 2.2E-12 4.7E-17 149.6 17.7 58 640-699 149-207 (588)
30 PRK11728 hydroxyglutarate oxid 99.4 4.3E-12 9.4E-17 139.1 18.9 61 639-709 154-214 (393)
31 COG0578 GlpA Glycerol-3-phosph 99.4 3.8E-12 8.2E-17 144.6 18.8 87 617-711 150-237 (532)
32 TIGR03364 HpnW_proposed FAD de 99.4 2E-12 4.2E-17 139.7 15.9 34 434-468 1-34 (365)
33 TIGR01813 flavo_cyto_c flavocy 99.4 7E-12 1.5E-16 139.5 19.1 64 639-704 135-198 (439)
34 PLN02464 glycerol-3-phosphate 99.4 1.1E-11 2.4E-16 144.7 20.8 66 638-707 237-304 (627)
35 PLN00128 Succinate dehydrogena 99.4 4.8E-12 1E-16 147.9 17.3 52 647-699 199-251 (635)
36 PTZ00139 Succinate dehydrogena 99.4 4E-12 8.8E-17 148.1 16.6 59 639-699 171-230 (617)
37 PRK06175 L-aspartate oxidase; 99.4 5E-12 1.1E-16 141.4 16.6 56 639-698 134-189 (433)
38 PRK07843 3-ketosteroid-delta-1 99.4 7.8E-12 1.7E-16 144.1 18.5 66 638-706 212-277 (557)
39 PRK09078 sdhA succinate dehydr 99.4 5.9E-12 1.3E-16 146.3 17.3 59 639-699 154-213 (598)
40 PRK05945 sdhA succinate dehydr 99.4 5.6E-12 1.2E-16 145.8 16.7 57 639-698 140-197 (575)
41 PRK12842 putative succinate de 99.4 1.4E-11 3E-16 142.4 19.9 63 640-705 220-282 (574)
42 PRK08641 sdhA succinate dehydr 99.4 1E-11 2.2E-16 144.1 18.1 50 649-699 151-201 (589)
43 PTZ00306 NADH-dependent fumara 99.4 7.1E-12 1.5E-16 155.3 17.5 53 648-701 560-623 (1167)
44 PRK08626 fumarate reductase fl 99.4 1E-11 2.2E-16 145.8 17.0 56 640-698 164-220 (657)
45 PRK07804 L-aspartate oxidase; 99.4 1.6E-11 3.4E-16 141.2 17.9 58 639-698 149-210 (541)
46 PRK07057 sdhA succinate dehydr 99.4 4.5E-11 9.7E-16 138.8 21.7 53 646-699 159-212 (591)
47 PRK05257 malate:quinone oxidor 99.4 2.4E-11 5.2E-16 138.3 18.9 68 639-710 188-257 (494)
48 TIGR01812 sdhA_frdA_Gneg succi 99.3 1.2E-11 2.7E-16 142.4 16.6 57 639-698 134-191 (566)
49 PRK06263 sdhA succinate dehydr 99.3 1.5E-11 3.2E-16 141.3 17.1 58 639-698 139-197 (543)
50 PLN02815 L-aspartate oxidase 99.3 1.5E-11 3.3E-16 142.8 16.9 59 639-699 161-223 (594)
51 COG0665 DadA Glycine/D-amino a 99.3 2.2E-11 4.8E-16 131.6 16.6 38 431-469 2-39 (387)
52 PRK08275 putative oxidoreducta 99.3 2.1E-11 4.5E-16 140.4 17.3 59 638-698 141-200 (554)
53 PRK07803 sdhA succinate dehydr 99.3 1.7E-11 3.7E-16 143.1 16.5 47 650-698 166-213 (626)
54 KOG0260|consensus 99.3 2.5E-11 5.4E-16 143.0 17.1 22 224-245 1572-1593(1605)
55 PRK08071 L-aspartate oxidase; 99.3 2.7E-11 5.8E-16 138.3 16.6 58 638-699 134-191 (510)
56 PRK12839 hypothetical protein; 99.3 4.2E-11 9E-16 138.6 18.3 58 646-704 225-282 (572)
57 PRK06854 adenylylsulfate reduc 99.3 7.1E-11 1.5E-15 137.6 20.3 57 639-698 137-195 (608)
58 PRK09231 fumarate reductase fl 99.3 4.1E-11 9E-16 138.9 18.2 50 647-698 146-196 (582)
59 PRK06069 sdhA succinate dehydr 99.3 3.7E-11 8.1E-16 139.0 17.8 57 639-698 143-200 (577)
60 PRK13369 glycerol-3-phosphate 99.3 8.2E-11 1.8E-15 133.9 20.2 65 639-709 161-226 (502)
61 KOG2820|consensus 99.3 1.3E-11 2.9E-16 131.8 12.8 65 638-709 157-223 (399)
62 PRK13339 malate:quinone oxidor 99.3 9.4E-11 2E-15 133.5 20.4 69 638-710 189-258 (497)
63 PRK12834 putative FAD-binding 99.3 4.9E-11 1.1E-15 137.1 18.4 56 647-704 164-233 (549)
64 PRK12266 glpD glycerol-3-phosp 99.3 8.2E-11 1.8E-15 134.2 19.9 66 638-709 160-227 (508)
65 PRK07395 L-aspartate oxidase; 99.3 4.7E-11 1E-15 137.6 18.1 50 647-698 147-197 (553)
66 COG1233 Phytoene dehydrogenase 99.3 1.3E-11 2.8E-16 140.1 13.0 40 432-472 2-41 (487)
67 PRK12843 putative FAD-binding 99.3 7.3E-11 1.6E-15 136.6 19.3 63 640-705 227-289 (578)
68 TIGR01811 sdhA_Bsu succinate d 99.3 3.3E-11 7.2E-16 140.2 16.4 51 647-698 145-196 (603)
69 TIGR01176 fum_red_Fp fumarate 99.3 5.6E-11 1.2E-15 137.8 17.9 51 647-699 145-196 (580)
70 COG2081 Predicted flavoprotein 99.3 1.6E-11 3.6E-16 134.1 12.6 89 593-700 81-169 (408)
71 PRK13800 putative oxidoreducta 99.3 5.6E-11 1.2E-15 144.0 18.5 49 648-698 156-205 (897)
72 PF03486 HI0933_like: HI0933-l 99.3 1.1E-11 2.3E-16 138.1 11.4 59 635-700 110-168 (409)
73 TIGR00551 nadB L-aspartate oxi 99.3 5.9E-11 1.3E-15 134.6 17.1 59 638-699 132-190 (488)
74 PRK06134 putative FAD-binding 99.3 2.3E-10 5E-15 132.6 21.6 61 640-703 223-283 (581)
75 KOG0260|consensus 99.3 7.1E-11 1.5E-15 139.3 17.0 17 61-80 1431-1447(1605)
76 PRK08205 sdhA succinate dehydr 99.3 9.4E-11 2E-15 135.9 18.0 59 638-698 144-206 (583)
77 PRK09077 L-aspartate oxidase; 99.3 8.9E-11 1.9E-15 134.8 17.4 52 646-698 150-207 (536)
78 TIGR02061 aprA adenosine phosp 99.3 1E-10 2.2E-15 136.3 17.7 51 647-698 138-191 (614)
79 PRK07512 L-aspartate oxidase; 99.3 6E-11 1.3E-15 135.5 15.2 49 647-698 149-197 (513)
80 COG1635 THI4 Ribulose 1,5-bisp 99.2 7.6E-11 1.7E-15 120.1 13.1 56 638-697 114-177 (262)
81 PLN02661 Putative thiazole syn 99.2 1.4E-10 3.1E-15 126.5 15.9 58 638-698 177-244 (357)
82 PRK01747 mnmC bifunctional tRN 99.2 4.5E-11 9.6E-16 140.3 12.4 35 433-468 260-294 (662)
83 PF01946 Thi4: Thi4 family; PD 99.2 1.4E-10 3.1E-15 118.3 14.3 56 638-696 101-163 (230)
84 TIGR02730 carot_isom carotene 99.2 6.5E-11 1.4E-15 134.0 12.3 60 638-704 233-292 (493)
85 TIGR02734 crtI_fam phytoene de 99.2 3.9E-11 8.3E-16 135.8 10.3 64 638-708 223-286 (502)
86 PRK04176 ribulose-1,5-biphosph 99.2 3E-10 6.4E-15 119.2 14.9 57 639-698 110-173 (257)
87 PRK10157 putative oxidoreducta 99.2 3.4E-10 7.3E-15 126.4 16.0 67 634-710 108-174 (428)
88 TIGR00292 thiazole biosynthesi 99.2 5.3E-10 1.1E-14 117.2 16.0 37 431-468 19-55 (254)
89 PRK13977 myosin-cross-reactive 99.1 1.1E-09 2.3E-14 126.0 17.2 62 638-700 230-295 (576)
90 KOG2844|consensus 99.1 7.6E-10 1.6E-14 126.3 15.1 62 639-709 192-253 (856)
91 PTZ00363 rab-GDP dissociation 99.1 1.2E-09 2.6E-14 122.9 16.1 41 431-472 2-42 (443)
92 PRK08401 L-aspartate oxidase; 99.1 1.8E-09 4E-14 121.9 17.5 53 638-699 124-176 (466)
93 PRK10015 oxidoreductase; Provi 99.1 7.2E-10 1.6E-14 124.0 13.9 66 635-710 109-174 (429)
94 PF12831 FAD_oxidored: FAD dep 99.1 7.9E-11 1.7E-15 131.5 6.0 63 640-709 96-158 (428)
95 COG0644 FixC Dehydrogenases (f 99.1 9.9E-10 2.1E-14 121.3 14.4 66 635-709 96-161 (396)
96 KOG0042|consensus 99.1 2E-11 4.3E-16 136.5 0.9 83 617-705 210-293 (680)
97 TIGR02733 desat_CrtD C-3',4' d 99.1 1.4E-09 3E-14 123.0 15.8 63 638-703 236-299 (492)
98 COG1053 SdhA Succinate dehydro 99.1 1.1E-09 2.4E-14 126.5 14.1 52 646-698 150-202 (562)
99 TIGR02485 CobZ_N-term precorri 99.1 2.7E-09 5.8E-14 119.0 15.8 61 639-704 128-189 (432)
100 PF01494 FAD_binding_3: FAD bi 99.0 1.6E-09 3.6E-14 114.0 11.6 70 635-709 112-181 (356)
101 PRK06185 hypothetical protein; 99.0 7.8E-09 1.7E-13 113.4 17.3 68 638-710 112-179 (407)
102 PRK07208 hypothetical protein; 99.0 6.6E-09 1.4E-13 116.8 16.5 40 432-472 3-42 (479)
103 KOG2853|consensus 99.0 8.9E-09 1.9E-13 110.4 16.2 69 638-711 248-332 (509)
104 COG3573 Predicted oxidoreducta 99.0 2.2E-09 4.8E-14 114.7 11.5 69 634-705 153-235 (552)
105 KOG1298|consensus 99.0 1.4E-09 3E-14 118.1 10.0 67 638-710 151-217 (509)
106 COG0029 NadB Aspartate oxidase 99.0 4.4E-09 9.5E-14 117.7 13.1 58 638-698 138-196 (518)
107 PF06039 Mqo: Malate:quinone o 99.0 2.3E-08 4.9E-13 111.7 18.1 71 638-712 186-257 (488)
108 KOG4254|consensus 99.0 5.5E-09 1.2E-13 115.4 12.9 71 635-712 265-335 (561)
109 PRK07364 2-octaprenyl-6-methox 98.9 2.3E-08 4.9E-13 109.9 16.0 40 428-468 13-52 (415)
110 PRK07233 hypothetical protein; 98.9 2.1E-08 4.7E-13 110.0 15.0 37 435-472 1-37 (434)
111 PRK08773 2-octaprenyl-3-methyl 98.9 2.4E-08 5.2E-13 109.3 15.1 36 431-467 4-39 (392)
112 PRK06184 hypothetical protein; 98.9 4.5E-08 9.7E-13 111.3 17.4 36 432-468 2-37 (502)
113 PLN02985 squalene monooxygenas 98.9 3.6E-08 7.8E-13 113.0 16.6 38 428-466 38-75 (514)
114 PRK07333 2-octaprenyl-6-methox 98.9 3.5E-08 7.7E-13 107.8 15.0 33 434-467 2-36 (403)
115 PRK08244 hypothetical protein; 98.8 5.6E-08 1.2E-12 110.1 16.3 35 433-468 2-36 (493)
116 TIGR03377 glycerol3P_GlpA glyc 98.8 5.9E-08 1.3E-12 110.9 16.6 122 577-708 67-199 (516)
117 PRK05192 tRNA uridine 5-carbox 98.8 3.4E-08 7.4E-13 114.7 14.2 34 432-466 3-36 (618)
118 TIGR02731 phytoene_desat phyto 98.8 7.3E-08 1.6E-12 107.8 16.3 57 640-698 219-276 (453)
119 PRK07608 ubiquinone biosynthes 98.8 5.9E-08 1.3E-12 105.6 15.1 36 432-468 4-39 (388)
120 TIGR02032 GG-red-SF geranylger 98.8 5.6E-08 1.2E-12 100.5 13.8 34 434-468 1-34 (295)
121 PF01134 GIDA: Glucose inhibit 98.8 2.3E-08 4.9E-13 110.8 11.1 56 635-697 96-151 (392)
122 PRK07045 putative monooxygenas 98.8 1.5E-07 3.3E-12 102.9 17.5 36 432-468 4-39 (388)
123 PRK06126 hypothetical protein; 98.8 2.5E-07 5.4E-12 106.2 19.8 36 431-467 5-40 (545)
124 KOG2415|consensus 98.8 1.4E-08 3E-13 111.2 8.9 75 633-709 182-269 (621)
125 TIGR02023 BchP-ChlP geranylger 98.8 1.1E-07 2.4E-12 104.4 15.2 32 434-466 1-32 (388)
126 PRK09126 hypothetical protein; 98.8 1.5E-07 3.2E-12 102.8 15.9 37 431-468 1-37 (392)
127 TIGR00275 flavoprotein, HI0933 98.8 7.1E-08 1.5E-12 107.1 13.6 32 437-469 1-32 (400)
128 TIGR01988 Ubi-OHases Ubiquinon 98.8 8.6E-08 1.9E-12 103.6 13.8 34 435-469 1-34 (385)
129 PRK05329 anaerobic glycerol-3- 98.7 7.5E-08 1.6E-12 108.0 13.4 60 638-702 263-322 (422)
130 PRK07494 2-octaprenyl-6-methox 98.7 1.8E-07 3.8E-12 102.2 15.5 37 430-467 4-40 (388)
131 PRK06183 mhpA 3-(3-hydroxyphen 98.7 2.5E-07 5.4E-12 106.2 17.3 37 431-468 8-44 (538)
132 PRK05714 2-octaprenyl-3-methyl 98.7 1.8E-07 3.8E-12 103.0 15.4 34 433-467 2-35 (405)
133 TIGR03378 glycerol3P_GlpB glyc 98.7 1.2E-07 2.5E-12 106.1 13.9 62 640-706 269-330 (419)
134 KOG2404|consensus 98.7 5.2E-08 1.1E-12 104.1 10.5 49 649-699 159-207 (477)
135 TIGR02028 ChlP geranylgeranyl 98.7 2.1E-07 4.6E-12 103.1 15.8 32 434-466 1-32 (398)
136 PLN00093 geranylgeranyl diphos 98.7 2.2E-07 4.7E-12 105.1 15.8 36 430-466 36-71 (450)
137 TIGR01350 lipoamide_DH dihydro 98.7 6.6E-07 1.4E-11 100.4 19.5 33 433-466 1-33 (461)
138 COG0654 UbiH 2-polyprenyl-6-me 98.7 1.9E-07 4.2E-12 102.7 14.9 33 433-466 2-34 (387)
139 PRK06847 hypothetical protein; 98.7 3.1E-07 6.7E-12 99.5 16.1 34 433-467 4-37 (375)
140 PRK08243 4-hydroxybenzoate 3-m 98.7 9.1E-08 2E-12 105.2 12.1 34 433-467 2-35 (392)
141 TIGR02352 thiamin_ThiO glycine 98.7 1.8E-07 4E-12 99.0 13.8 116 574-703 72-197 (337)
142 TIGR02732 zeta_caro_desat caro 98.7 3.2E-07 7E-12 104.1 16.4 57 646-704 230-290 (474)
143 PRK06834 hypothetical protein; 98.7 3.4E-07 7.4E-12 104.3 16.3 35 432-467 2-36 (488)
144 PRK07588 hypothetical protein; 98.7 2.1E-07 4.6E-12 101.9 14.1 32 435-467 2-33 (391)
145 PRK08013 oxidoreductase; Provi 98.7 1.3E-07 2.9E-12 104.3 12.5 36 432-468 2-37 (400)
146 COG0492 TrxB Thioredoxin reduc 98.7 7.1E-08 1.5E-12 103.9 10.1 64 640-708 185-248 (305)
147 PRK08020 ubiF 2-octaprenyl-3-m 98.7 2.4E-07 5.3E-12 101.2 14.3 36 431-467 3-38 (391)
148 PRK06617 2-octaprenyl-6-methox 98.7 2.6E-07 5.6E-12 101.1 14.5 33 434-467 2-34 (374)
149 PLN02612 phytoene desaturase 98.7 5.9E-07 1.3E-11 104.3 17.7 39 433-472 93-131 (567)
150 PRK07538 hypothetical protein; 98.7 2.4E-07 5.2E-12 102.6 13.7 32 435-467 2-33 (413)
151 TIGR01984 UbiH 2-polyprenyl-6- 98.7 3.7E-07 7.9E-12 99.2 14.9 33 435-468 1-34 (382)
152 PRK05868 hypothetical protein; 98.6 4.6E-07 1E-11 99.4 15.3 33 435-468 3-35 (372)
153 PRK08163 salicylate hydroxylas 98.6 4.3E-07 9.3E-12 99.3 14.8 34 433-467 4-37 (396)
154 PRK07190 hypothetical protein; 98.6 5.3E-07 1.1E-11 102.8 15.8 36 432-468 4-39 (487)
155 PF13738 Pyr_redox_3: Pyridine 98.6 7.3E-08 1.6E-12 95.2 7.7 62 638-707 86-147 (203)
156 PLN02697 lycopene epsilon cycl 98.6 3.3E-07 7.1E-12 105.6 13.7 35 431-466 106-140 (529)
157 PRK06416 dihydrolipoamide dehy 98.6 1.6E-06 3.4E-11 97.6 18.9 35 432-467 3-37 (462)
158 COG3380 Predicted NAD/FAD-depe 98.6 1.2E-07 2.6E-12 99.6 9.0 35 435-470 3-37 (331)
159 PRK05732 2-octaprenyl-6-methox 98.6 6.9E-07 1.5E-11 97.4 15.4 36 431-466 1-38 (395)
160 PRK08850 2-octaprenyl-6-methox 98.6 5.9E-07 1.3E-11 99.1 14.5 34 432-466 3-36 (405)
161 KOG2852|consensus 98.6 3.4E-08 7.3E-13 104.3 4.4 65 638-707 152-216 (380)
162 PLN02172 flavin-containing mon 98.6 2.9E-07 6.2E-12 104.4 11.9 69 636-708 113-183 (461)
163 TIGR02360 pbenz_hydroxyl 4-hyd 98.6 6.8E-07 1.5E-11 98.6 14.6 34 433-467 2-35 (390)
164 PRK07236 hypothetical protein; 98.6 8.8E-07 1.9E-11 97.1 15.2 36 431-467 4-39 (386)
165 KOG2665|consensus 98.6 2.7E-07 5.9E-12 98.5 10.4 40 430-469 45-85 (453)
166 PRK08849 2-octaprenyl-3-methyl 98.6 6.5E-07 1.4E-11 98.2 13.9 35 432-467 2-36 (384)
167 PRK06753 hypothetical protein; 98.6 1.2E-06 2.6E-11 95.1 15.8 33 435-468 2-34 (373)
168 PRK06370 mercuric reductase; V 98.5 2.7E-06 5.9E-11 95.9 18.6 36 431-467 3-38 (463)
169 PRK11445 putative oxidoreducta 98.5 1.9E-06 4.1E-11 93.7 16.7 32 434-467 2-33 (351)
170 TIGR00136 gidA glucose-inhibit 98.5 1E-06 2.2E-11 102.5 15.2 32 434-466 1-32 (617)
171 PRK06115 dihydrolipoamide dehy 98.5 3.7E-07 8E-12 103.2 11.3 34 432-466 2-35 (466)
172 PRK05249 soluble pyridine nucl 98.5 9.8E-07 2.1E-11 99.1 14.3 36 431-467 3-38 (461)
173 PRK08132 FAD-dependent oxidore 98.5 2E-06 4.3E-11 99.0 16.7 36 431-467 21-56 (547)
174 PLN02576 protoporphyrinogen ox 98.5 5.9E-07 1.3E-11 101.6 12.0 41 432-472 11-51 (496)
175 PTZ00367 squalene epoxidase; P 98.5 1.4E-06 3E-11 101.3 14.8 35 432-467 32-66 (567)
176 TIGR01424 gluta_reduc_2 glutat 98.5 4.9E-07 1.1E-11 101.5 10.8 33 433-466 2-34 (446)
177 PRK05675 sdhA succinate dehydr 98.5 1.5E-06 3.3E-11 101.0 14.8 59 639-699 131-190 (570)
178 COG2907 Predicted NAD/FAD-bind 98.5 7.5E-07 1.6E-11 96.3 10.8 38 434-473 9-46 (447)
179 COG1249 Lpd Pyruvate/2-oxoglut 98.5 3.3E-06 7.1E-11 95.7 16.0 38 431-469 2-39 (454)
180 PF04820 Trp_halogenase: Trypt 98.4 1.2E-06 2.5E-11 99.3 12.2 58 632-696 152-209 (454)
181 PLN02463 lycopene beta cyclase 98.4 2.2E-06 4.7E-11 97.0 14.2 36 431-467 26-61 (447)
182 PLN02487 zeta-carotene desatur 98.4 1.1E-06 2.4E-11 102.1 12.1 38 433-471 75-112 (569)
183 TIGR01372 soxA sarcosine oxida 98.4 2.5E-06 5.4E-11 105.0 15.7 61 646-709 362-422 (985)
184 TIGR01989 COQ6 Ubiquinone bios 98.4 2.6E-06 5.6E-11 95.4 14.5 33 434-467 1-37 (437)
185 TIGR01790 carotene-cycl lycope 98.4 2.8E-06 6.1E-11 92.8 14.2 32 435-467 1-32 (388)
186 PRK06475 salicylate hydroxylas 98.4 3.7E-06 8E-11 92.8 15.1 32 435-467 4-35 (400)
187 PRK06996 hypothetical protein; 98.4 2.7E-06 5.8E-11 93.9 13.8 38 429-467 7-48 (398)
188 PLN02676 polyamine oxidase 98.4 4.7E-06 1E-10 95.1 16.1 40 432-472 25-65 (487)
189 PRK06467 dihydrolipoamide dehy 98.4 1.3E-06 2.9E-11 98.9 11.5 35 432-467 3-37 (471)
190 TIGR03140 AhpF alkyl hydropero 98.4 3E-06 6.5E-11 97.2 14.1 58 647-706 400-458 (515)
191 PLN02507 glutathione reductase 98.4 3.7E-06 8E-11 96.2 13.8 35 431-466 23-57 (499)
192 COG3075 GlpB Anaerobic glycero 98.4 1.1E-06 2.4E-11 94.4 8.8 59 640-703 264-322 (421)
193 TIGR01316 gltA glutamate synth 98.3 3.9E-06 8.4E-11 94.7 13.3 62 647-709 321-398 (449)
194 PRK06327 dihydrolipoamide dehy 98.3 2.3E-06 5E-11 97.0 11.4 34 432-466 3-36 (475)
195 COG2072 TrkA Predicted flavopr 98.3 3.4E-06 7.3E-11 95.3 12.7 39 430-469 5-44 (443)
196 PRK12831 putative oxidoreducta 98.3 3.6E-06 7.8E-11 95.5 12.9 62 647-709 330-408 (464)
197 PRK15317 alkyl hydroperoxide r 98.3 2.9E-06 6.3E-11 97.3 11.9 58 647-706 399-457 (517)
198 PRK10262 thioredoxin reductase 98.3 5.2E-06 1.1E-10 88.9 12.9 66 640-709 191-258 (321)
199 PRK08294 phenol 2-monooxygenas 98.3 1.3E-05 2.9E-10 94.3 17.0 36 431-467 30-66 (634)
200 PRK12769 putative oxidoreducta 98.3 4.2E-06 9.2E-11 98.7 12.7 38 433-471 327-364 (654)
201 COG1232 HemY Protoporphyrinoge 98.3 7.9E-06 1.7E-10 92.3 14.1 37 435-472 2-40 (444)
202 PRK12810 gltD glutamate syntha 98.3 4.6E-06 1E-10 94.6 12.0 61 647-709 341-412 (471)
203 PF13450 NAD_binding_8: NAD(P) 98.3 7.5E-07 1.6E-11 75.4 4.3 33 438-471 1-33 (68)
204 PLN02529 lysine-specific histo 98.3 1.4E-05 3E-10 95.4 15.9 41 431-472 158-198 (738)
205 COG0445 GidA Flavin-dependent 98.2 2.9E-06 6.3E-11 96.4 9.1 56 638-699 104-159 (621)
206 COG2509 Uncharacterized FAD-de 98.2 2.6E-05 5.7E-10 87.2 16.4 54 639-699 178-231 (486)
207 TIGR03197 MnmC_Cterm tRNA U-34 98.2 5.8E-06 1.3E-10 90.6 11.2 57 638-704 139-195 (381)
208 PRK11749 dihydropyrimidine deh 98.2 5.9E-06 1.3E-10 93.2 10.5 37 433-470 140-176 (457)
209 KOG1335|consensus 98.2 1.1E-05 2.4E-10 88.3 11.7 54 640-696 258-312 (506)
210 PRK12775 putative trifunctiona 98.2 1.1E-05 2.3E-10 99.6 12.6 38 433-471 430-467 (1006)
211 KOG1399|consensus 98.2 7.8E-06 1.7E-10 92.5 10.3 36 433-469 6-41 (448)
212 PRK09564 coenzyme A disulfide 98.1 3.9E-05 8.4E-10 85.7 15.6 63 638-709 195-257 (444)
213 TIGR01438 TGR thioredoxin and 98.1 1.1E-05 2.3E-10 92.1 11.2 33 433-466 2-34 (484)
214 PRK12779 putative bifunctional 98.1 1.4E-05 2.9E-10 98.1 12.7 39 433-472 306-344 (944)
215 KOG0029|consensus 98.1 2.3E-06 5E-11 98.0 5.4 42 430-472 12-53 (501)
216 COG1231 Monoamine oxidase [Ami 98.1 2.5E-05 5.3E-10 87.5 13.2 41 431-472 5-45 (450)
217 PRK09754 phenylpropionate diox 98.1 9.4E-05 2E-09 81.9 17.6 64 638-710 190-253 (396)
218 PF00743 FMO-like: Flavin-bind 98.1 1.8E-05 3.9E-10 91.5 12.4 34 435-469 3-36 (531)
219 PRK12778 putative bifunctional 98.1 1.6E-05 3.6E-10 95.2 12.2 38 432-470 430-467 (752)
220 TIGR03219 salicylate_mono sali 98.1 7.6E-05 1.7E-09 82.7 16.3 33 435-468 2-35 (414)
221 KOG2614|consensus 98.1 2.2E-05 4.8E-10 86.9 11.8 33 434-467 3-35 (420)
222 TIGR03315 Se_ygfK putative sel 98.1 3.7E-05 7.9E-10 94.4 14.8 38 433-471 537-574 (1012)
223 PLN02268 probable polyamine ox 98.1 4E-06 8.7E-11 93.3 5.7 37 435-472 2-38 (435)
224 PRK09897 hypothetical protein; 98.1 6.7E-05 1.4E-09 86.8 15.6 35 435-469 3-38 (534)
225 TIGR01816 sdhA_forward succina 98.1 3E-05 6.6E-10 90.1 12.9 59 638-699 123-182 (565)
226 PRK11883 protoporphyrinogen ox 98.0 4.3E-06 9.3E-11 92.7 5.0 37 435-472 2-40 (451)
227 PRK08010 pyridine nucleotide-d 98.0 4.4E-06 9.5E-11 93.5 4.9 35 432-467 2-36 (441)
228 PRK12771 putative glutamate sy 98.0 3.8E-05 8.3E-10 89.1 12.8 37 433-470 137-173 (564)
229 PRK12809 putative oxidoreducta 98.0 0.00012 2.6E-09 86.3 16.9 37 433-470 310-346 (639)
230 TIGR01318 gltD_gamma_fam gluta 98.0 2.2E-05 4.7E-10 89.2 10.3 38 432-470 140-177 (467)
231 TIGR00031 UDP-GALP_mutase UDP- 98.0 6.8E-06 1.5E-10 91.2 5.2 37 434-471 2-38 (377)
232 PRK07845 flavoprotein disulfid 98.0 7.2E-05 1.6E-09 84.8 13.5 31 435-466 3-33 (466)
233 PRK07251 pyridine nucleotide-d 98.0 6.6E-06 1.4E-10 92.0 4.9 35 432-467 2-36 (438)
234 TIGR01421 gluta_reduc_1 glutat 98.0 7.7E-06 1.7E-10 92.3 5.2 34 433-467 2-35 (450)
235 TIGR00562 proto_IX_ox protopor 97.9 8.5E-06 1.8E-10 91.1 5.3 39 434-472 3-44 (462)
236 PRK06116 glutathione reductase 97.9 7.8E-06 1.7E-10 91.8 4.9 34 432-466 3-36 (450)
237 PF06100 Strep_67kDa_ant: Stre 97.9 9.6E-05 2.1E-09 83.9 13.4 39 434-472 3-44 (500)
238 PRK06292 dihydrolipoamide dehy 97.9 9.1E-06 2E-10 91.3 5.2 34 432-466 2-35 (460)
239 TIGR01292 TRX_reduct thioredox 97.9 9.3E-06 2E-10 84.5 4.7 57 647-706 188-246 (300)
240 PRK09853 putative selenate red 97.9 0.00012 2.6E-09 89.9 14.5 38 433-471 539-576 (1019)
241 PF13434 K_oxygenase: L-lysine 97.9 5.9E-05 1.3E-09 82.6 10.7 60 635-696 96-157 (341)
242 PRK07818 dihydrolipoamide dehy 97.9 1.3E-05 2.8E-10 90.6 5.5 35 433-468 4-38 (466)
243 COG3634 AhpF Alkyl hydroperoxi 97.9 4.5E-05 9.7E-10 82.8 9.2 59 646-706 401-460 (520)
244 COG1252 Ndh NADH dehydrogenase 97.9 0.00023 5E-09 79.7 15.0 59 639-709 214-273 (405)
245 COG0562 Glf UDP-galactopyranos 97.8 1.6E-05 3.5E-10 85.6 5.0 38 434-472 2-39 (374)
246 PRK05976 dihydrolipoamide dehy 97.8 1.5E-05 3.3E-10 90.2 5.1 35 432-467 3-37 (472)
247 PRK12416 protoporphyrinogen ox 97.8 1.4E-05 3.1E-10 89.7 4.4 38 435-472 3-45 (463)
248 PRK14694 putative mercuric red 97.8 2E-05 4.4E-10 89.1 5.5 37 430-467 3-39 (468)
249 PF05834 Lycopene_cycl: Lycope 97.8 1.6E-05 3.5E-10 87.6 4.4 34 435-469 1-36 (374)
250 TIGR02053 MerA mercuric reduct 97.8 2E-05 4.4E-10 88.8 5.1 34 434-468 1-34 (463)
251 PLN02568 polyamine oxidase 97.8 2.2E-05 4.7E-10 90.9 5.3 39 433-472 5-48 (539)
252 KOG2311|consensus 97.8 6E-05 1.3E-09 84.5 8.4 36 430-466 25-60 (679)
253 TIGR03169 Nterm_to_SelD pyridi 97.8 0.00052 1.1E-08 74.7 15.4 59 638-709 195-253 (364)
254 PTZ00058 glutathione reductase 97.8 2.6E-05 5.7E-10 90.7 5.4 37 430-467 45-81 (561)
255 TIGR03143 AhpF_homolog putativ 97.8 2.6E-05 5.7E-10 90.4 5.4 34 433-467 4-37 (555)
256 PRK13984 putative oxidoreducta 97.7 0.00027 5.9E-09 82.6 13.4 39 432-471 282-320 (604)
257 KOG2960|consensus 97.7 5.3E-05 1.1E-09 77.6 6.4 35 432-466 75-110 (328)
258 PRK13748 putative mercuric red 97.7 2.7E-05 5.9E-10 89.8 4.9 34 432-466 97-130 (561)
259 COG3349 Uncharacterized conser 97.7 2.7E-05 5.8E-10 88.4 4.7 37 435-472 2-38 (485)
260 PF07992 Pyr_redox_2: Pyridine 97.7 3.3E-05 7.1E-10 76.0 4.7 31 435-466 1-31 (201)
261 PF00996 GDI: GDP dissociation 97.7 0.00028 6.2E-09 79.8 12.0 41 431-472 2-42 (438)
262 PTZ00318 NADH dehydrogenase-li 97.7 0.00081 1.8E-08 75.4 15.5 37 432-469 9-45 (424)
263 PRK14989 nitrite reductase sub 97.7 0.00062 1.3E-08 82.9 15.3 66 638-709 191-256 (847)
264 PTZ00052 thioredoxin reductase 97.6 4.1E-05 9E-10 87.7 4.5 33 433-466 5-37 (499)
265 TIGR01789 lycopene_cycl lycope 97.6 5.5E-05 1.2E-09 83.5 5.3 35 435-469 1-36 (370)
266 PRK13512 coenzyme A disulfide 97.6 0.00095 2.1E-08 75.1 15.3 59 639-709 194-252 (438)
267 PLN02546 glutathione reductase 97.6 5.7E-05 1.2E-09 87.9 5.1 34 431-465 77-110 (558)
268 PRK14727 putative mercuric red 97.6 6.7E-05 1.5E-09 85.3 4.9 39 430-469 13-51 (479)
269 PTZ00449 104 kDa microneme/rho 97.6 0.00066 1.4E-08 76.6 12.4 92 131-230 580-671 (943)
270 PRK05335 tRNA (uracil-5-)-meth 97.6 6.8E-05 1.5E-09 84.4 4.8 35 434-469 3-37 (436)
271 PTZ00153 lipoamide dehydrogena 97.5 8.2E-05 1.8E-09 88.1 4.8 34 432-466 115-148 (659)
272 TIGR01423 trypano_reduc trypan 97.5 0.0001 2.2E-09 84.4 5.2 35 432-466 2-36 (486)
273 PLN02927 antheraxanthin epoxid 97.5 0.0001 2.2E-09 87.2 5.4 37 430-467 78-114 (668)
274 TIGR02374 nitri_red_nirB nitri 97.5 0.0011 2.3E-08 80.3 14.0 64 638-709 186-249 (785)
275 PLN02328 lysine-specific histo 97.4 0.00015 3.2E-09 87.4 5.7 41 431-472 236-276 (808)
276 TIGR00137 gid_trmFO tRNA:m(5)U 97.4 0.00013 2.8E-09 82.4 4.7 34 434-468 1-34 (433)
277 PF13454 NAD_binding_9: FAD-NA 97.4 0.0053 1.2E-07 59.6 15.1 32 437-468 1-36 (156)
278 COG1148 HdrA Heterodisulfide r 97.4 0.00016 3.4E-09 81.5 4.5 44 428-472 119-162 (622)
279 KOG0405|consensus 97.3 0.0017 3.8E-08 70.9 11.9 36 430-466 17-52 (478)
280 PRK04965 NADH:flavorubredoxin 97.3 0.0026 5.5E-08 69.9 13.5 58 646-710 194-251 (377)
281 PRK06912 acoL dihydrolipoamide 97.2 0.00029 6.3E-09 79.6 5.0 34 435-469 2-35 (458)
282 PF00070 Pyr_redox: Pyridine n 97.2 0.00048 1E-08 59.3 4.9 33 436-469 2-34 (80)
283 KOG0685|consensus 97.2 0.00038 8.2E-09 78.5 4.9 43 430-472 18-60 (498)
284 PRK07818 dihydrolipoamide dehy 97.2 0.0028 6.1E-08 71.8 11.9 32 435-467 174-205 (466)
285 KOG0404|consensus 97.1 0.0018 3.9E-08 67.2 9.0 64 638-704 197-261 (322)
286 PTZ00449 104 kDa microneme/rho 97.1 0.0026 5.6E-08 72.0 10.2 94 133-234 576-669 (943)
287 TIGR02053 MerA mercuric reduct 97.1 0.0033 7.1E-08 71.1 11.2 32 435-467 168-199 (463)
288 PRK05976 dihydrolipoamide dehy 97.1 0.0046 9.9E-08 70.2 12.3 32 435-467 182-213 (472)
289 KOG1276|consensus 97.0 0.0007 1.5E-08 75.6 4.9 45 427-472 5-51 (491)
290 PRK06327 dihydrolipoamide dehy 97.0 0.0051 1.1E-07 70.0 12.0 32 435-467 185-216 (475)
291 PRK12814 putative NADPH-depend 97.0 0.00075 1.6E-08 80.0 5.4 37 433-470 193-229 (652)
292 KOG4716|consensus 97.0 0.00052 1.1E-08 74.6 3.6 37 429-466 15-51 (503)
293 PLN03000 amine oxidase 97.0 0.00077 1.7E-08 81.7 5.4 40 432-472 183-222 (881)
294 PLN02852 ferredoxin-NADP+ redu 96.9 0.0011 2.3E-08 76.3 5.9 38 433-471 26-65 (491)
295 PRK07846 mycothione reductase; 96.9 0.00084 1.8E-08 76.0 4.9 62 639-709 212-275 (451)
296 TIGR01292 TRX_reduct thioredox 96.9 0.015 3.2E-07 60.6 13.6 31 435-466 143-173 (300)
297 PRK08255 salicylyl-CoA 5-hydro 96.9 0.00082 1.8E-08 81.1 4.8 35 435-469 2-37 (765)
298 PRK12770 putative glutamate sy 96.9 0.001 2.2E-08 72.6 5.0 36 434-470 19-54 (352)
299 TIGR03452 mycothione_red mycot 96.8 0.0012 2.5E-08 74.8 4.7 62 639-709 215-278 (452)
300 PRK06567 putative bifunctional 96.8 0.0012 2.5E-08 80.9 4.9 34 433-467 383-416 (1028)
301 TIGR03385 CoA_CoA_reduc CoA-di 96.8 0.014 3.1E-07 65.1 13.2 54 647-709 191-244 (427)
302 TIGR01317 GOGAT_sm_gam glutama 96.8 0.0015 3.3E-08 74.7 5.3 36 434-470 144-179 (485)
303 PRK06912 acoL dihydrolipoamide 96.7 0.011 2.3E-07 67.0 11.6 32 435-467 172-203 (458)
304 PLN02976 amine oxidase 96.7 0.0016 3.4E-08 82.0 5.3 40 432-472 692-731 (1713)
305 PRK06115 dihydrolipoamide dehy 96.7 0.012 2.6E-07 67.0 11.8 32 435-467 176-207 (466)
306 TIGR01421 gluta_reduc_1 glutat 96.7 0.0097 2.1E-07 67.4 11.0 32 435-467 168-199 (450)
307 PRK05249 soluble pyridine nucl 96.7 0.011 2.4E-07 66.6 11.3 32 435-467 177-208 (461)
308 PRK06467 dihydrolipoamide dehy 96.6 0.014 3.1E-07 66.4 11.7 32 435-467 176-207 (471)
309 TIGR03862 flavo_PP4765 unchara 96.6 0.011 2.5E-07 65.8 10.6 57 634-699 86-142 (376)
310 PRK06116 glutathione reductase 96.6 0.012 2.7E-07 66.2 11.0 32 435-467 169-200 (450)
311 PTZ00188 adrenodoxin reductase 96.5 0.0026 5.6E-08 73.0 5.0 37 434-471 40-77 (506)
312 PRK07845 flavoprotein disulfid 96.5 0.013 2.9E-07 66.5 10.5 32 435-467 179-210 (466)
313 KOG1439|consensus 96.4 0.023 5E-07 63.3 11.4 41 431-472 2-42 (440)
314 PRK06292 dihydrolipoamide dehy 96.4 0.023 5E-07 64.1 11.4 32 435-467 171-202 (460)
315 KOG3923|consensus 96.4 0.016 3.5E-07 62.4 9.3 32 434-465 4-41 (342)
316 TIGR03467 HpnE squalene-associ 96.4 0.02 4.3E-07 62.6 10.5 50 646-701 208-257 (419)
317 KOG3851|consensus 96.3 0.044 9.5E-07 59.8 12.4 36 431-466 37-73 (446)
318 PRK08010 pyridine nucleotide-d 96.3 0.024 5.2E-07 63.7 11.0 32 435-467 160-191 (441)
319 PRK14727 putative mercuric red 96.3 0.036 7.7E-07 63.3 12.3 31 435-466 190-220 (479)
320 PLN02507 glutathione reductase 96.3 0.026 5.6E-07 65.0 11.1 32 435-467 205-236 (499)
321 COG0493 GltD NADPH-dependent g 95.9 0.0064 1.4E-07 69.4 4.1 38 434-472 124-161 (457)
322 TIGR01423 trypano_reduc trypan 95.9 0.04 8.7E-07 63.3 10.5 56 647-708 243-300 (486)
323 KOG0399|consensus 95.4 0.013 2.7E-07 71.6 4.1 40 432-472 1784-1823(2142)
324 COG0446 HcaD Uncharacterized N 95.4 0.016 3.6E-07 62.7 4.6 38 434-472 137-174 (415)
325 KOG2403|consensus 95.4 0.02 4.3E-07 65.9 5.3 35 431-466 53-87 (642)
326 PRK04965 NADH:flavorubredoxin 95.4 0.02 4.4E-07 62.9 5.3 35 434-468 3-38 (377)
327 KOG3855|consensus 95.4 0.014 3E-07 65.3 3.9 39 430-468 33-74 (481)
328 PF13434 K_oxygenase: L-lysine 95.1 0.96 2.1E-05 49.9 17.3 45 649-695 293-338 (341)
329 COG4716 Myosin-crossreactive a 95.0 0.019 4.1E-07 63.6 3.7 36 434-469 23-61 (587)
330 COG3486 IucD Lysine/ornithine 95.0 0.16 3.6E-06 57.0 10.9 38 431-468 3-40 (436)
331 KOG1336|consensus 94.8 0.14 3E-06 58.3 9.9 55 646-705 266-320 (478)
332 PF02558 ApbA: Ketopantoate re 94.7 0.039 8.4E-07 52.5 4.5 31 436-467 1-31 (151)
333 PF01210 NAD_Gly3P_dh_N: NAD-d 94.7 0.035 7.5E-07 54.1 4.3 30 436-466 2-31 (157)
334 PF01593 Amino_oxidase: Flavin 94.7 0.028 6E-07 60.2 3.8 29 443-472 1-29 (450)
335 PF02737 3HCDH_N: 3-hydroxyacy 94.4 0.047 1E-06 54.7 4.5 30 436-466 2-31 (180)
336 COG1206 Gid NAD(FAD)-utilizing 94.3 0.034 7.4E-07 60.8 3.4 34 434-468 4-37 (439)
337 PRK09754 phenylpropionate diox 94.3 0.048 1E-06 60.5 4.7 34 435-469 146-179 (396)
338 COG0446 HcaD Uncharacterized N 94.2 2.8 6.1E-05 45.4 17.9 63 638-707 182-246 (415)
339 PF03721 UDPG_MGDP_dh_N: UDP-g 94.1 0.046 9.9E-07 55.1 3.7 32 435-467 2-33 (185)
340 COG1251 NirB NAD(P)H-nitrite r 94.0 0.29 6.2E-06 58.6 10.2 64 638-709 191-254 (793)
341 TIGR01350 lipoamide_DH dihydro 93.8 0.068 1.5E-06 60.2 4.8 34 435-469 172-205 (461)
342 PRK07251 pyridine nucleotide-d 93.7 0.074 1.6E-06 59.8 4.8 34 435-469 159-192 (438)
343 PRK06567 putative bifunctional 93.5 0.23 5.1E-06 61.5 8.8 57 640-699 647-729 (1028)
344 PRK01438 murD UDP-N-acetylmura 93.5 0.08 1.7E-06 60.3 4.6 32 435-467 18-49 (480)
345 PRK06129 3-hydroxyacyl-CoA deh 93.3 0.087 1.9E-06 56.8 4.3 32 435-467 4-35 (308)
346 PRK02705 murD UDP-N-acetylmura 93.2 0.094 2E-06 59.2 4.6 33 435-468 2-34 (459)
347 COG5044 MRS6 RAB proteins gera 93.1 0.11 2.3E-06 57.8 4.7 39 433-472 6-44 (434)
348 PRK06370 mercuric reductase; V 93.1 0.11 2.3E-06 59.1 4.8 34 435-469 173-206 (463)
349 COG0569 TrkA K+ transport syst 93.0 0.1 2.3E-06 54.1 4.2 33 435-468 2-34 (225)
350 PF13738 Pyr_redox_3: Pyridine 93.0 0.091 2E-06 51.8 3.6 33 434-467 168-200 (203)
351 PRK07846 mycothione reductase; 93.0 0.11 2.4E-06 58.9 4.8 34 435-469 168-201 (451)
352 PRK06416 dihydrolipoamide dehy 92.8 0.12 2.7E-06 58.4 4.8 34 435-469 174-207 (462)
353 PRK08293 3-hydroxybutyryl-CoA 92.6 0.13 2.9E-06 54.8 4.5 32 435-467 5-36 (287)
354 COG4529 Uncharacterized protei 92.6 0.15 3.3E-06 58.2 5.1 37 434-470 2-40 (474)
355 PRK09260 3-hydroxybutyryl-CoA 92.6 0.14 2.9E-06 54.7 4.5 32 435-467 3-34 (288)
356 PRK13512 coenzyme A disulfide 92.5 0.13 2.8E-06 58.1 4.5 34 435-469 150-183 (438)
357 PRK06522 2-dehydropantoate 2-r 92.4 0.14 3.1E-06 54.1 4.4 31 435-466 2-32 (304)
358 PRK05708 2-dehydropantoate 2-r 92.4 0.14 3E-06 55.3 4.4 32 435-467 4-35 (305)
359 PRK12921 2-dehydropantoate 2-r 92.3 0.15 3.2E-06 54.2 4.4 31 435-466 2-32 (305)
360 PRK14106 murD UDP-N-acetylmura 92.2 0.15 3.3E-06 57.4 4.5 33 434-467 6-38 (450)
361 COG1249 Lpd Pyruvate/2-oxoglut 92.0 0.18 4E-06 57.7 4.9 34 435-469 175-208 (454)
362 TIGR03452 mycothione_red mycot 91.9 0.18 3.9E-06 57.2 4.8 34 435-469 171-204 (452)
363 KOG4405|consensus 91.9 0.15 3.2E-06 57.2 3.9 40 431-471 6-45 (547)
364 PRK07819 3-hydroxybutyryl-CoA 91.8 0.18 4E-06 54.0 4.4 33 435-468 7-39 (286)
365 PRK09564 coenzyme A disulfide 91.7 0.2 4.2E-06 56.2 4.7 35 434-469 150-184 (444)
366 TIGR01424 gluta_reduc_2 glutat 91.6 0.2 4.4E-06 56.6 4.7 34 435-469 168-201 (446)
367 KOG2755|consensus 91.6 0.13 2.8E-06 54.9 2.9 34 436-469 2-36 (334)
368 TIGR03140 AhpF alkyl hydropero 91.6 0.19 4E-06 58.2 4.4 34 435-469 354-387 (515)
369 PRK07066 3-hydroxybutyryl-CoA 91.6 0.2 4.3E-06 55.0 4.4 32 435-467 9-40 (321)
370 PRK07530 3-hydroxybutyryl-CoA 91.5 0.21 4.6E-06 53.3 4.5 31 435-466 6-36 (292)
371 KOG1800|consensus 91.5 0.21 4.7E-06 55.7 4.6 35 435-469 22-57 (468)
372 PRK06249 2-dehydropantoate 2-r 91.5 0.24 5.2E-06 53.5 4.9 32 435-467 7-38 (313)
373 PRK08229 2-dehydropantoate 2-r 91.4 0.21 4.5E-06 54.2 4.3 32 435-467 4-35 (341)
374 PRK10262 thioredoxin reductase 91.3 0.22 4.8E-06 53.4 4.4 33 435-468 148-180 (321)
375 COG1004 Ugd Predicted UDP-gluc 91.3 0.2 4.3E-06 56.2 4.1 31 435-466 2-32 (414)
376 PRK06035 3-hydroxyacyl-CoA deh 91.1 0.25 5.4E-06 52.7 4.5 32 435-467 5-36 (291)
377 TIGR01316 gltA glutamate synth 91.1 0.23 5E-06 56.4 4.5 33 435-468 274-306 (449)
378 PF02254 TrkA_N: TrkA-N domain 91.0 0.32 6.9E-06 44.2 4.5 30 436-466 1-30 (116)
379 TIGR02354 thiF_fam2 thiamine b 91.0 0.29 6.3E-06 50.0 4.7 36 430-466 18-54 (200)
380 PTZ00153 lipoamide dehydrogena 90.9 0.25 5.4E-06 59.1 4.7 34 435-469 314-347 (659)
381 PRK15317 alkyl hydroperoxide r 90.9 0.24 5.2E-06 57.2 4.4 34 435-469 353-386 (517)
382 TIGR03143 AhpF_homolog putativ 90.8 0.24 5.1E-06 57.9 4.3 34 435-469 145-178 (555)
383 PRK06718 precorrin-2 dehydroge 90.8 0.29 6.3E-06 50.0 4.5 32 434-466 11-42 (202)
384 PF01488 Shikimate_DH: Shikima 90.8 0.33 7.2E-06 46.2 4.6 33 433-466 12-45 (135)
385 TIGR02374 nitri_red_nirB nitri 90.8 0.25 5.4E-06 60.2 4.6 34 435-469 142-175 (785)
386 PRK12770 putative glutamate sy 90.6 0.28 6.1E-06 53.6 4.5 32 435-467 174-206 (352)
387 PRK05808 3-hydroxybutyryl-CoA 90.6 0.3 6.5E-06 51.8 4.5 31 435-466 5-35 (282)
388 PTZ00058 glutathione reductase 90.6 0.27 6E-06 57.7 4.5 34 435-469 239-272 (561)
389 TIGR01470 cysG_Nterm siroheme 90.4 0.33 7.2E-06 49.8 4.5 31 435-466 11-41 (205)
390 PF01262 AlaDh_PNT_C: Alanine 90.4 0.35 7.5E-06 47.7 4.5 32 434-466 21-52 (168)
391 PF00899 ThiF: ThiF family; I 90.3 0.39 8.4E-06 45.4 4.5 32 434-466 3-35 (135)
392 PRK13748 putative mercuric red 90.1 0.3 6.6E-06 56.6 4.4 32 435-467 272-303 (561)
393 PRK12831 putative oxidoreducta 90.0 0.32 7E-06 55.6 4.5 32 435-467 283-314 (464)
394 cd01483 E1_enzyme_family Super 89.9 0.43 9.3E-06 45.4 4.6 31 436-467 2-33 (143)
395 PRK06719 precorrin-2 dehydroge 89.9 0.41 8.8E-06 47.1 4.4 31 434-465 14-44 (157)
396 PRK00094 gpsA NAD(P)H-dependen 89.8 0.36 7.8E-06 51.6 4.4 32 435-467 3-34 (325)
397 TIGR03026 NDP-sugDHase nucleot 89.8 0.32 6.9E-06 54.7 4.1 32 435-467 2-33 (411)
398 TIGR00518 alaDH alanine dehydr 89.8 0.36 7.7E-06 53.8 4.5 33 433-466 167-199 (370)
399 TIGR01763 MalateDH_bact malate 89.8 0.36 7.9E-06 52.3 4.4 32 435-467 3-35 (305)
400 COG1748 LYS9 Saccharopine dehy 89.7 0.35 7.6E-06 54.4 4.2 31 435-466 3-34 (389)
401 PLN02546 glutathione reductase 89.7 0.36 7.8E-06 56.7 4.6 34 435-469 254-287 (558)
402 PRK14989 nitrite reductase sub 89.6 0.36 7.7E-06 59.4 4.6 34 435-469 147-180 (847)
403 PRK06130 3-hydroxybutyryl-CoA 89.6 0.4 8.6E-06 51.5 4.5 31 435-466 6-36 (311)
404 PRK14694 putative mercuric red 89.6 0.37 8E-06 54.9 4.4 32 435-467 180-211 (468)
405 PRK04148 hypothetical protein; 89.5 0.3 6.5E-06 47.2 3.1 31 435-467 19-49 (134)
406 PTZ00052 thioredoxin reductase 89.4 0.37 8E-06 55.6 4.4 31 435-466 184-214 (499)
407 PRK14618 NAD(P)H-dependent gly 89.4 0.4 8.7E-06 52.0 4.4 31 435-466 6-36 (328)
408 TIGR01438 TGR thioredoxin and 89.4 0.38 8.3E-06 55.3 4.4 31 435-466 182-212 (484)
409 cd01487 E1_ThiF_like E1_ThiF_l 89.3 0.48 1E-05 47.3 4.5 30 436-466 2-32 (174)
410 PRK12475 thiamine/molybdopteri 89.2 0.44 9.6E-06 52.5 4.5 37 430-467 21-58 (338)
411 PRK07688 thiamine/molybdopteri 89.1 0.48 1E-05 52.3 4.8 37 430-467 21-58 (339)
412 PF13241 NAD_binding_7: Putati 89.1 0.3 6.5E-06 44.4 2.7 33 433-466 7-39 (103)
413 cd01080 NAD_bind_m-THF_DH_Cycl 89.1 0.49 1.1E-05 47.3 4.4 34 432-466 43-77 (168)
414 PRK11064 wecC UDP-N-acetyl-D-m 89.1 0.43 9.3E-06 53.9 4.5 33 435-468 5-37 (415)
415 PRK14620 NAD(P)H-dependent gly 88.9 0.44 9.6E-06 51.6 4.3 31 435-466 2-32 (326)
416 PLN02545 3-hydroxybutyryl-CoA 88.9 0.48 1E-05 50.6 4.5 32 435-467 6-37 (295)
417 PRK15116 sulfur acceptor prote 88.8 0.42 9.1E-06 51.2 3.9 38 429-467 26-64 (268)
418 cd05292 LDH_2 A subgroup of L- 88.7 0.49 1.1E-05 51.3 4.4 32 435-467 2-35 (308)
419 PRK02472 murD UDP-N-acetylmura 88.7 0.45 9.7E-06 53.6 4.3 32 435-467 7-38 (447)
420 PTZ00318 NADH dehydrogenase-li 88.5 0.53 1.1E-05 53.0 4.7 35 435-469 175-222 (424)
421 cd01075 NAD_bind_Leu_Phe_Val_D 88.4 0.59 1.3E-05 47.7 4.5 31 435-466 30-60 (200)
422 PRK11749 dihydropyrimidine deh 87.8 0.58 1.3E-05 53.1 4.5 32 435-467 275-307 (457)
423 TIGR02279 PaaC-3OHAcCoADH 3-hy 87.7 0.59 1.3E-05 54.3 4.5 32 435-467 7-38 (503)
424 TIGR02356 adenyl_thiF thiazole 87.6 0.67 1.4E-05 47.3 4.4 36 430-466 18-54 (202)
425 PRK14619 NAD(P)H-dependent gly 87.6 0.7 1.5E-05 49.8 4.8 32 435-467 6-37 (308)
426 PRK07417 arogenate dehydrogena 87.5 0.6 1.3E-05 49.7 4.1 31 435-466 2-32 (279)
427 COG1252 Ndh NADH dehydrogenase 87.4 0.42 9.2E-06 54.0 3.0 37 433-469 155-203 (405)
428 PRK12548 shikimate 5-dehydroge 87.0 0.75 1.6E-05 49.4 4.6 31 435-466 128-159 (289)
429 PRK12549 shikimate 5-dehydroge 87.0 0.73 1.6E-05 49.5 4.4 32 434-466 128-160 (284)
430 cd05311 NAD_bind_2_malic_enz N 86.8 0.75 1.6E-05 47.9 4.3 33 434-467 26-61 (226)
431 PLN02353 probable UDP-glucose 86.7 0.7 1.5E-05 53.3 4.4 32 435-466 3-35 (473)
432 cd01339 LDH-like_MDH L-lactate 86.7 0.68 1.5E-05 49.8 4.0 32 436-468 1-33 (300)
433 PRK11730 fadB multifunctional 86.7 0.67 1.4E-05 56.1 4.4 32 435-467 315-346 (715)
434 PRK08644 thiamine biosynthesis 86.5 0.88 1.9E-05 46.9 4.6 36 430-466 25-61 (212)
435 cd05291 HicDH_like L-2-hydroxy 86.5 0.83 1.8E-05 49.4 4.6 33 435-468 2-36 (306)
436 PRK08268 3-hydroxy-acyl-CoA de 86.4 0.76 1.6E-05 53.4 4.5 33 435-468 9-41 (507)
437 PRK07531 bifunctional 3-hydrox 86.4 0.74 1.6E-05 53.2 4.4 31 435-466 6-36 (495)
438 PRK12778 putative bifunctional 86.3 0.75 1.6E-05 55.8 4.5 32 435-467 572-604 (752)
439 COG0686 Ald Alanine dehydrogen 86.2 0.55 1.2E-05 51.3 3.0 34 432-466 167-200 (371)
440 PRK08017 oxidoreductase; Provi 86.1 0.9 1.9E-05 46.3 4.4 31 435-466 4-35 (256)
441 TIGR02437 FadB fatty oxidation 86.1 0.75 1.6E-05 55.6 4.4 32 435-467 315-346 (714)
442 cd00401 AdoHcyase S-adenosyl-L 86.0 0.83 1.8E-05 51.9 4.4 33 434-467 203-235 (413)
443 COG1250 FadB 3-hydroxyacyl-CoA 85.8 0.78 1.7E-05 50.1 3.9 31 435-466 5-35 (307)
444 TIGR01915 npdG NADPH-dependent 85.7 0.98 2.1E-05 46.3 4.4 32 435-467 2-34 (219)
445 TIGR03736 PRTRC_ThiF PRTRC sys 85.7 0.96 2.1E-05 47.9 4.4 36 432-467 10-55 (244)
446 PRK06223 malate dehydrogenase; 85.6 0.91 2E-05 48.8 4.3 32 435-467 4-36 (307)
447 PRK15057 UDP-glucose 6-dehydro 85.5 0.88 1.9E-05 51.1 4.3 31 435-467 2-32 (388)
448 PRK04308 murD UDP-N-acetylmura 85.4 0.99 2.1E-05 51.0 4.7 33 435-468 7-39 (445)
449 cd01078 NAD_bind_H4MPT_DH NADP 84.8 1.2 2.6E-05 44.5 4.5 32 434-466 29-61 (194)
450 TIGR01505 tartro_sem_red 2-hyd 84.7 1 2.3E-05 47.9 4.2 31 436-467 2-32 (291)
451 PRK05690 molybdopterin biosynt 84.5 1.3 2.7E-05 46.7 4.7 36 430-466 29-65 (245)
452 TIGR02441 fa_ox_alpha_mit fatt 84.4 1 2.2E-05 54.7 4.4 32 435-467 337-368 (737)
453 PTZ00082 L-lactate dehydrogena 84.4 1.2 2.7E-05 48.7 4.7 33 435-468 8-41 (321)
454 PF13478 XdhC_C: XdhC Rossmann 84.3 0.87 1.9E-05 43.9 3.1 31 436-467 1-31 (136)
455 TIGR02355 moeB molybdopterin s 84.3 1.3 2.8E-05 46.5 4.7 37 430-467 21-58 (240)
456 PRK09424 pntA NAD(P) transhydr 84.3 1.1 2.4E-05 52.1 4.5 34 433-467 165-198 (509)
457 cd00757 ThiF_MoeB_HesA_family 84.2 1.2 2.7E-05 46.0 4.4 36 430-466 18-54 (228)
458 TIGR00507 aroE shikimate 5-deh 84.0 1.2 2.7E-05 47.1 4.4 31 435-466 119-149 (270)
459 PRK08328 hypothetical protein; 84.0 1.2 2.7E-05 46.3 4.4 35 432-467 26-61 (231)
460 PRK09496 trkA potassium transp 83.9 1.2 2.6E-05 50.1 4.4 32 435-467 2-33 (453)
461 PRK01710 murD UDP-N-acetylmura 83.9 1.2 2.6E-05 50.8 4.5 32 435-467 16-47 (458)
462 COG1893 ApbA Ketopantoate redu 83.8 1.2 2.5E-05 48.6 4.1 33 435-468 2-34 (307)
463 PRK07326 short chain dehydroge 83.7 1.3 2.8E-05 44.6 4.3 31 435-466 8-39 (237)
464 KOG2304|consensus 83.7 0.96 2.1E-05 47.6 3.2 33 435-468 13-45 (298)
465 PRK07774 short chain dehydroge 83.6 1.4 2.9E-05 44.8 4.4 31 435-466 8-39 (250)
466 PRK07067 sorbitol dehydrogenas 83.6 1.4 2.9E-05 45.3 4.4 32 435-467 8-40 (257)
467 PRK06057 short chain dehydroge 83.5 1.4 3E-05 45.2 4.4 32 435-467 9-41 (255)
468 PRK08217 fabG 3-ketoacyl-(acyl 83.2 1.5 3.3E-05 44.3 4.5 31 435-466 7-38 (253)
469 TIGR02853 spore_dpaA dipicolin 83.0 1.4 3.1E-05 47.5 4.4 32 434-466 152-183 (287)
470 cd01065 NAD_bind_Shikimate_DH 82.9 1.7 3.7E-05 41.3 4.5 32 434-466 20-52 (155)
471 PLN02520 bifunctional 3-dehydr 82.9 1.3 2.8E-05 51.7 4.4 32 434-466 380-411 (529)
472 PF03807 F420_oxidored: NADP o 82.9 1.8 3.9E-05 37.9 4.3 30 436-466 2-35 (96)
473 cd01485 E1-1_like Ubiquitin ac 82.9 1.5 3.3E-05 44.6 4.3 37 430-467 16-53 (198)
474 PRK08306 dipicolinate synthase 82.8 1.4 3.1E-05 47.6 4.4 33 433-466 152-184 (296)
475 PF03446 NAD_binding_2: NAD bi 82.8 1.6 3.6E-05 42.6 4.4 31 435-466 3-33 (163)
476 PRK07523 gluconate 5-dehydroge 82.6 1.6 3.5E-05 44.7 4.4 31 435-466 12-43 (255)
477 cd05191 NAD_bind_amino_acid_DH 82.5 2.1 4.5E-05 37.5 4.5 32 434-465 24-55 (86)
478 PRK11154 fadJ multifunctional 82.5 1.3 2.8E-05 53.6 4.2 31 435-466 311-342 (708)
479 PRK00258 aroE shikimate 5-dehy 82.4 1.6 3.5E-05 46.6 4.5 32 434-466 124-156 (278)
480 PLN02172 flavin-containing mon 82.3 1.1 2.5E-05 51.3 3.6 33 435-468 206-238 (461)
481 PRK05993 short chain dehydroge 82.3 1.6 3.5E-05 45.7 4.4 32 435-467 6-38 (277)
482 PRK04690 murD UDP-N-acetylmura 82.3 1.4 3E-05 50.6 4.2 31 435-466 10-40 (468)
483 PRK12779 putative bifunctional 82.1 1.3 2.9E-05 55.2 4.3 32 435-467 449-480 (944)
484 PRK15461 NADH-dependent gamma- 82.0 1.6 3.4E-05 47.0 4.3 32 435-467 3-34 (296)
485 PRK06505 enoyl-(acyl carrier p 81.9 1.6 3.4E-05 45.9 4.2 31 435-466 9-42 (271)
486 cd01490 Ube1_repeat2 Ubiquitin 81.8 1.6 3.4E-05 50.0 4.3 32 436-468 2-39 (435)
487 TIGR01832 kduD 2-deoxy-D-gluco 81.8 1.8 3.9E-05 44.0 4.4 31 435-466 7-38 (248)
488 PRK07231 fabG 3-ketoacyl-(acyl 81.8 1.8 3.8E-05 43.8 4.3 32 435-467 7-39 (251)
489 TIGR02440 FadJ fatty oxidation 81.8 1.5 3.3E-05 53.0 4.4 32 435-467 306-338 (699)
490 PF13460 NAD_binding_10: NADH( 81.6 2.1 4.5E-05 41.6 4.6 31 436-467 1-32 (183)
491 TIGR03325 BphB_TodD cis-2,3-di 81.5 1.8 3.9E-05 44.7 4.4 32 435-467 7-39 (262)
492 PRK07060 short chain dehydroge 81.5 1.9 4.1E-05 43.6 4.4 31 435-466 11-42 (245)
493 PRK08223 hypothetical protein; 81.5 1.7 3.7E-05 47.1 4.3 38 429-467 23-61 (287)
494 PRK07831 short chain dehydroge 81.4 1.7 3.7E-05 44.7 4.2 32 435-467 19-52 (262)
495 PRK03369 murD UDP-N-acetylmura 81.3 1.7 3.7E-05 50.1 4.5 31 435-466 14-44 (488)
496 cd00755 YgdL_like Family of ac 81.3 1.8 4E-05 45.3 4.3 34 432-466 10-44 (231)
497 PRK00141 murD UDP-N-acetylmura 81.2 1.7 3.6E-05 49.9 4.4 31 435-466 17-47 (473)
498 PRK06841 short chain dehydroge 81.2 1.9 4.2E-05 44.0 4.4 32 435-467 17-49 (255)
499 PRK11559 garR tartronate semia 81.1 1.8 3.9E-05 46.1 4.3 32 435-467 4-35 (296)
500 PF03435 Saccharop_dh: Sacchar 81.1 1.5 3.2E-05 48.6 3.8 32 436-467 1-33 (386)
No 1
>KOG1238|consensus
Probab=100.00 E-value=3.9e-37 Score=347.37 Aligned_cols=288 Identities=42% Similarity=0.623 Sum_probs=256.2
Q ss_pred ccCCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCCcccCCcccccccccccccccccccccccccccccc
Q psy14408 428 VKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNAR 507 (720)
Q Consensus 428 I~~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~ss~~Pg~~~~~~~~~l~~~y~s~p~~~g~l~l~~~~ 507 (720)
.+...+||+||||||.+||+.|.+|+|.+-.+|||||||+......+.+......+...++|.|.++++...|..+.++.
T Consensus 52 ~~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~Ps~~ac~~m~~~~ 131 (623)
T KOG1238|consen 52 SELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTEPSQHACLAMSEDR 131 (623)
T ss_pred cccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhccccccccCcCccChhhhhhhcCCc
Confidence 44667899999999999999999999987899999999988865667775555667788999999999999999999999
Q ss_pred eeeccccccCCcccccchhhhcCCchhHHHHHHhcCCCCChhHHHHHHHhhhhchhhhccccccccCcCCcccccccccc
Q psy14408 508 IKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNK 587 (720)
Q Consensus 508 i~~~~G~~lGGgStvN~~~~~r~s~~d~~eWae~g~~dWsydellpyF~s~e~~~~~sld~d~~v~~~~G~L~va~~~~~ 587 (720)
+.|.+|+++||++.+|++++.|+.+++|++|++.+..+|+|++++++|+++|.......+. ...++..|.+.++...+.
T Consensus 132 c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~-~~y~~~~g~~~ve~~~~~ 210 (623)
T KOG1238|consen 132 CYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPEL-TPYHGAGGPLLVEAGVYP 210 (623)
T ss_pred eecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCccc-CcccccCCcceecccccc
Confidence 9999999999999999999999999999999999989999999999999999876433332 226788888888888887
Q ss_pred cchHHHHHHHHHHHHcCCCCCCCCCCccccccccccCCccccCcchhHHHHHHHHHHhcCCCeEEEcCeEEEEEEEc-cC
Q psy14408 588 ENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN-DQ 666 (720)
Q Consensus 588 ~~~~~~q~llea~rklG~~~~~d~ng~~~~~G~~~~~~g~~~G~k~~aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e-~g 666 (720)
......+.++.+++|... .|++++. ..|+..+......|.++.+..++++.+...+.++.+...+.|++|.+| .+
T Consensus 211 --~~~~~~~~~ag~e~G~~~-~D~nG~~-~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~ 286 (623)
T KOG1238|consen 211 --NNLFTAFHRAGTEIGGSI-FDRNGER-HTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVTRVLIDPAG 286 (623)
T ss_pred --CchhhHhHHhHHhcCCCc-cCCCCcc-ccchhhhhccccCCEEEEehhhhhhhhhccCccccccccceEEEEEEcCCC
Confidence 778889999999999544 4899988 899999999999999999999999998833679999999999999998 56
Q ss_pred CcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCCCccccccCCCC
Q psy14408 667 NVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720 (720)
Q Consensus 667 GrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgpk~~L~~~gip 720 (720)
+++.||+.....|++.+|+|+|+||||||+++||+|||.|||||+++|+++|||
T Consensus 287 ~~a~gv~~~~~~~~~~~v~a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIp 340 (623)
T KOG1238|consen 287 KRAKGVEFVRDGGKEHTVKARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIP 340 (623)
T ss_pred ceEEEEEEEecCceeeeecccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCC
Confidence 789999998844788999999999999999999999999999999999999997
No 2
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=2e-35 Score=309.06 Aligned_cols=273 Identities=41% Similarity=0.628 Sum_probs=203.3
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCC-CcEEEEccCCCCCCCcccCC-cccccccccccccccccccccccccccccceeec
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGGDTPIHSRIPG-MSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKIT 511 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G-~KVLVLEKG~~~~~ss~~Pg-~~~~~~~~~l~~~y~s~p~~~g~l~l~~~~i~~~ 511 (720)
|||||||||.+|+++|.+||++ | .+|||||||........... ...........|.+...++ ..+....+.|.
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~-~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 75 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEA-GNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQ----PFLNGRTINWP 75 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTS-TTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEE----ECTTTTSEEEE
T ss_pred CCEEEECcCHHHHHHHHHHhhC-CCCcEEEEEccccCccccchhhhccccccCcccccccccccc----cccccceeeee
Confidence 7999999999999999999999 6 79999999987654431111 1111122234444433332 23566778888
Q ss_pred cccccCCcccccchhhhcCCchhHHHHHHh-cCCCCChhHHHHHHHhhhhchhhhccccccccCcCCcccc-cccccccc
Q psy14408 512 AGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPV-GLFKNKEN 589 (720)
Q Consensus 512 ~G~~lGGgStvN~~~~~r~s~~d~~eWae~-g~~dWsydellpyF~s~e~~~~~sld~d~~v~~~~G~L~v-a~~~~~~~ 589 (720)
+|+++||++.+|++++.|..+.++++|... +...|.|+++.++|+++|.+.... ...++..+.+.+ ......
T Consensus 76 ~G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~----~~~~g~~~~~~v~~~~~~~-- 149 (296)
T PF00732_consen 76 RGKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPS----SDLHGVDGPLPVSSSPPYP-- 149 (296)
T ss_dssp EB-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTB----GGGSCBSSSEEEHHHCSCH--
T ss_pred cceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhcccc----ccccccccccccccccCCC--
Confidence 999999999999999999999999999986 556799999999999999776443 224555566665 222222
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCCccccccccccCCccccCcchhHHHHHHHHHHhcCCCeEEEcCeEEEEEEEc-cCCc
Q psy14408 590 NIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN-DQNV 668 (720)
Q Consensus 590 ~~~~q~llea~rklG~~~~~d~ng~~~~~G~~~~~~g~~~G~k~~aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e-~gGr 668 (720)
....+.+.++++++|++...+++... .+|+|.....|..|.|..+...||..++ ++.|++|+++++|++|+++ ++++
T Consensus 150 ~~~~~~~~~a~~~~G~~~~~~~~~~~-~~g~~~~~~~~~~g~r~s~~~~~L~~a~-~~~n~~l~~~~~V~~i~~~~~~~~ 227 (296)
T PF00732_consen 150 SPMNQALMDAAEELGIPVPQDFNGCD-PCGFCMTGFNCPNGARSSAATTYLPPAL-KRPNLTLLTNARVTRIIFDGDGGR 227 (296)
T ss_dssp CTHHHHHHHHHHHTTHHBCSCTTSST-CSEEEECEECECTTCBBHHHHHHHHHHT-TTTTEEEEESEEEEEEEEETTSTE
T ss_pred CHHHHHHHHHHHHcCCcccccccccc-ccccccccccccchhceehhhcccchhh-ccCCccEEcCcEEEEEeeeccccc
Confidence 45668888999999998655666555 7888765445899999999999999998 5669999999999999885 4789
Q ss_pred EEEEEEEecCCc--EEEEEcCcEEEEccCCcchHHHHHHcCCCCccccccCCCC
Q psy14408 669 ATGVEYVNSKGE--TVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720 (720)
Q Consensus 669 AtGV~v~dt~G~--e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgpk~~L~~~gip 720 (720)
|+||++.+.+++ ..++.| |+||||||+++|++||++||||++.+|+++||+
T Consensus 228 a~gV~~~~~~~~~~~~~~~a-k~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~ 280 (296)
T PF00732_consen 228 ATGVEYVDNDGGVQRRIVAA-KEVILAAGAIGTPRLLLRSGIGPKDHLDALGIP 280 (296)
T ss_dssp EEEEEEEETTTSEEEEEEEE-EEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHH
T ss_pred eeeeeeeecCCcceeeeccc-eeEEeccCCCCChhhhcccccccHHHHHHcCCC
Confidence 999999997665 455556 579999999999999999999999999999974
No 3
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=2.8e-34 Score=326.19 Aligned_cols=271 Identities=40% Similarity=0.581 Sum_probs=214.9
Q ss_pred cEEEECCcHHHHHHHHHHHhcCC-CcEEEEccCCCCC---CCcccCCcccccc-ccccccccccccccccccccccccee
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGGDTP---IHSRIPGMSSVLS-LSEFDHAYLAEPSQFAGLGVRNARIK 509 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G-~KVLVLEKG~~~~---~ss~~Pg~~~~~~-~~~l~~~y~s~p~~~g~l~l~~~~i~ 509 (720)
||||||||.+|+++|.+||++ | ++|||||+|.... .....+......+ +...+|.+...++.. +.++.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~-~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~ 75 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSED-VSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPH----MNNRRVG 75 (532)
T ss_pred CEEEECCCchHHHHHHHhccC-CCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCC----CCCceEe
Confidence 899999999999999999999 7 7999999997432 1112222111111 223457665544432 4466788
Q ss_pred eccccccCCcccccchhhhcCCchhHHHHHH-hcCCCCChhHHHHHHHhhhhchhhhccccccccCcCCccccccccccc
Q psy14408 510 ITAGKGLGGSSAVQNILYQRGTSYDYENFAK-LGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKE 588 (720)
Q Consensus 510 ~~~G~~lGGgStvN~~~~~r~s~~d~~eWae-~g~~dWsydellpyF~s~e~~~~~sld~d~~v~~~~G~L~va~~~~~~ 588 (720)
|.+|+++||++.+|++++.|....+|+.|++ .+..+|.|+++++||+++|.+.... ...++..|.+.+......
T Consensus 76 ~~~g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~~----~~~~g~~G~~~v~~~~~~- 150 (532)
T TIGR01810 76 HARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGGE----KPYRGHDGPIKVRRGPAD- 150 (532)
T ss_pred eecccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCCC----cccCCCCCCEEEecCCCC-
Confidence 9999999999999999999999999999988 5778999999999999999776421 124677787777655444
Q ss_pred chHHHHHHHHHHHHcCCCCCCCCCCccccccccccCCccccCcchhHHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCc
Q psy14408 589 NNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNV 668 (720)
Q Consensus 589 ~~~~~q~llea~rklG~~~~~d~ng~~~~~G~~~~~~g~~~G~k~~aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGr 668 (720)
....+.+.++++++|++...++++.. .+|++.+...|..|.|..+..+||..++ ++.|++|+++++|++|+++ +++
T Consensus 151 -~~~~~~~~~a~~~~G~~~~~~~~~~~-~~g~~~~~~~~~~g~r~s~~~~~l~~a~-~r~nl~i~~~~~V~rI~~~-~~r 226 (532)
T TIGR01810 151 -NPLFQAFIEAGVEAGYNKTPDVNGFR-QEGFGPMDSTVHNGRRVSAARAYLHPAM-KRPNLEVQTRAFVTKINFE-GNR 226 (532)
T ss_pred -CHHHHHHHHHHHHcCCCccCCCCCCC-ccceEEEEEEcCCCEEEcHHHHHhhhhc-cCCCeEEEeCCEEEEEEec-CCe
Confidence 56778888999999998877777655 5677766667778889999999998887 6778999999999999998 899
Q ss_pred EEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCCCccccccCCCC
Q psy14408 669 ATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720 (720)
Q Consensus 669 AtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgpk~~L~~~gip 720 (720)
|+||++.+ .|+..++.+.|+||||||+++|++||++|||||+++|+++||+
T Consensus 227 a~GV~~~~-~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~ 277 (532)
T TIGR01810 227 ATGVEFKK-GGRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIE 277 (532)
T ss_pred EEEEEEEe-CCcEEEEEEeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCC
Confidence 99999987 3333445444589999999999999999999999999999986
No 4
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=6.9e-34 Score=324.97 Aligned_cols=275 Identities=39% Similarity=0.649 Sum_probs=214.3
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC---CCCcccCCcccccc-cccccccccccccccccccccccc
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGMSSVLS-LSEFDHAYLAEPSQFAGLGVRNAR 507 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~---~~ss~~Pg~~~~~~-~~~l~~~y~s~p~~~g~l~l~~~~ 507 (720)
.+|||||||||.+|+++|.+||+..|++|||||+|... ......+......+ .....|.+...++.. ..++.
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~----~~~~~ 79 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPH----MNNRR 79 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCC----CCCCe
Confidence 46899999999999999999999339999999999643 11112232111111 223456665544332 34456
Q ss_pred eeeccccccCCcccccchhhhcCCchhHHHHHHh-cCCCCChhHHHHHHHhhhhchhhhccccccccCcCCccccccc-c
Q psy14408 508 IKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLF-K 585 (720)
Q Consensus 508 i~~~~G~~lGGgStvN~~~~~r~s~~d~~eWae~-g~~dWsydellpyF~s~e~~~~~sld~d~~v~~~~G~L~va~~-~ 585 (720)
+.|.+|+++||++.+|++++.|....+|+.|.+. +..+|.|+++++||+++|.+.... ...++..|.+.+... .
T Consensus 80 ~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~~----~~~~g~~gp~~~~~~~~ 155 (560)
T PRK02106 80 MECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGGE----DDYRGGDGPLSVTRGKP 155 (560)
T ss_pred eecccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCCC----ccccCCCCCEEEeCCCC
Confidence 8889999999999999999999999999999987 778999999999999999876211 124556676665432 2
Q ss_pred cccchHHHHHHHHHHHHcCCCCCCCCCCccccccccccCCccccCcchhHHHHHHHHHHhcCCCeEEEcCeEEEEEEEcc
Q psy14408 586 NKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIND 665 (720)
Q Consensus 586 ~~~~~~~~q~llea~rklG~~~~~d~ng~~~~~G~~~~~~g~~~G~k~~aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~ 665 (720)
.. ....+.+.++++++|++...+.++.. .+|++.+...|..|.|..+..+||..+. ++.|++|++++.|++|+++
T Consensus 156 ~~--~~~~~~~~~a~~~lG~~~~~~~~~~~-~~g~~~~~~~~~~g~R~s~~~~~l~~a~-~~~nl~i~~~a~V~rI~~~- 230 (560)
T PRK02106 156 GT--NPLFQAFVEAGVQAGYPRTDDLNGYQ-QEGFGPMDRTVTNGRRWSAARAYLDPAL-KRPNLTIVTHALTDRILFE- 230 (560)
T ss_pred CC--CHHHHHHHHHHHHcCCCcCCCCCCCC-CceeEEEeeecCCCEEEChHHHhhcccc-CCCCcEEEcCCEEEEEEEe-
Confidence 22 45677888899999998877777665 6777777677788899999999998887 5678999999999999999
Q ss_pred CCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCCCccccccCCCC
Q psy14408 666 QNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720 (720)
Q Consensus 666 gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgpk~~L~~~gip 720 (720)
+++|+||++.+..+....+.| |+||||||++.|++||++|||+|+++|+++||+
T Consensus 231 ~~~a~GV~~~~~~~~~~~~~a-k~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~ 284 (560)
T PRK02106 231 GKRAVGVEYERGGGRETARAR-REVILSAGAINSPQLLQLSGIGPAEHLKELGIP 284 (560)
T ss_pred CCeEEEEEEEeCCcEEEEEee-eeEEEccCCCCCHHHHhhcCCCChHHHHhcCCc
Confidence 889999999874443334455 589999999999999999999999999999985
No 5
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=99.97 E-value=1.9e-30 Score=296.12 Aligned_cols=280 Identities=38% Similarity=0.600 Sum_probs=228.5
Q ss_pred CCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCC-CcccCCcccccccc-cccccccccccccccccccccc
Q psy14408 430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI-HSRIPGMSSVLSLS-EFDHAYLAEPSQFAGLGVRNAR 507 (720)
Q Consensus 430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~-ss~~Pg~~~~~~~~-~l~~~y~s~p~~~g~l~l~~~~ 507 (720)
...++|+||||||.+|+++|.+|++. |++|+|||+|..... ...++..+...+.. ...|.+..+++. .+.++.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~-g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~----~~~~r~ 78 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDA-GLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEP----HLRGRE 78 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCC-CCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCccc----CCCCcc
Confidence 34579999999999999999999966 999999999965433 23445444444444 667888776655 367788
Q ss_pred eeeccccccCCcccccchhhhcCCchhHHHHHHh-cCCCCChhHHHHHHHhhhhchhhhccccccccCcCCccccccccc
Q psy14408 508 IKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKN 586 (720)
Q Consensus 508 i~~~~G~~lGGgStvN~~~~~r~s~~d~~eWae~-g~~dWsydellpyF~s~e~~~~~sld~d~~v~~~~G~L~va~~~~ 586 (720)
+.|.+|+++||+|.+|++.+.|....+|+.|... |..+|.|+++++||+++|.+.+...+.....++..|.+.+.....
T Consensus 79 ~~~~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~~ 158 (542)
T COG2303 79 LAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRS 158 (542)
T ss_pred ccccccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCCCC
Confidence 9999999999999999999999999999999876 558999999999999999866432110023577788888877744
Q ss_pred ccchHHHHHHHHHHHHcCCCCCCCCCCccccccccccCCccccCcchhHHHHHHHHHHhcCCCeEEEcCeEEEEEEEccC
Q psy14408 587 KENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQ 666 (720)
Q Consensus 587 ~~~~~~~q~llea~rklG~~~~~d~ng~~~~~G~~~~~~g~~~G~k~~aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~g 666 (720)
. ....+.+.++.+++|++...++++.. .+|++.+...+..|.++.+..++|..++ ++.+++|++++.|++|+++ +
T Consensus 159 ~--~~~~~a~~~a~~~~G~~~~~~~~~~~-~~g~g~~~~~~~~g~r~sa~~a~l~~a~-~~~nl~v~t~a~v~ri~~~-~ 233 (542)
T COG2303 159 P--NPIARAFIEAGEQLGFPTTPDPNGAD-QEGFGPYCVTICNGRRWSAARAYLKPAL-KRPNLTLLTGARVRRILLE-G 233 (542)
T ss_pred c--hHHHHHHHHHHHHcCCCcCcccccCC-CCCcccceeeccCCeEeechhhcchhHh-cCCceEEecCCEEEEEEEE-C
Confidence 4 67888888888999999988888877 6677766666668999999999999988 6788999999999999999 9
Q ss_pred CcEEEEEEEecCC--cEEEEEcCcEEEEccCCcchHHHHHHcCCCCccccccCCCC
Q psy14408 667 NVATGVEYVNSKG--ETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720 (720)
Q Consensus 667 GrAtGV~v~dt~G--~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgpk~~L~~~gip 720 (720)
++++||++...++ .+..+.+ ++||||||+++|++||+.||+++++.|..+||.
T Consensus 234 ~r~~gv~~~~~~~~~~~~~~a~-~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~ 288 (542)
T COG2303 234 DRAVGVEVEIGDGGTIETAVAA-REVVLAAGAINSPKLLLLSGIGPADHLLEHGID 288 (542)
T ss_pred CeeEEEEEEeCCCCceEEEecC-ceEEEeccccCCHHHHHhcCCCchhhhhhcCCe
Confidence 9999999986443 2444455 579999999999999999999999999998873
No 6
>PLN02785 Protein HOTHEAD
Probab=99.94 E-value=2.7e-26 Score=264.19 Aligned_cols=252 Identities=27% Similarity=0.408 Sum_probs=174.2
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCCcccCCcccccccccccccccccccccccccccccceee
Q psy14408 431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKI 510 (720)
Q Consensus 431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~ss~~Pg~~~~~~~~~l~~~y~s~p~~~g~l~l~~~~i~~ 510 (720)
..+||+||||||.+|+++|.+|+++ .+|||||||........+... ........+|.+....+.. ..++++.+
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~~--~~VLllE~G~~~~~~~~~~~~-~~~~~~~~d~~~~~~~q~~----~~~~~~~~ 125 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQN--FSVLLLERGGVPFGNANVSFL-ENFHIGLADTSPTSASQAF----ISTDGVIN 125 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhcC--CcEEEEecCCCCCCCchhhhH-HhhCCcccccCCccccccc----cCCCceec
Confidence 3469999999999999999999984 899999999643111111110 0111123356665544322 34667899
Q ss_pred ccccccCCcccccchhhhcCCchhHHHHHHhcCCCCChhHHHHHHHhhhhchhhhccccccccCcCCcccccccccccch
Q psy14408 511 TAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENN 590 (720)
Q Consensus 511 ~~G~~lGGgStvN~~~~~r~s~~d~~eWae~g~~dWsydellpyF~s~e~~~~~sld~d~~v~~~~G~L~va~~~~~~~~ 590 (720)
.+|+++||++.+|++.+.|+...+++. .+|.|+.+.++|++.|.... . .... .
T Consensus 126 ~rGr~LGGsS~iN~~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~~~---------~----------~~~~--~ 178 (587)
T PLN02785 126 ARARVLGGGTCINAGFYSRASTRFIQK------AGWDAKLVNESYPWVERQIV---------H----------WPKV--A 178 (587)
T ss_pred cccceecchhhhcCeEEEeCCHHHhcc------CCCCcccccchHHHHhcccc---------c----------CCCc--C
Confidence 999999999999999999999887743 47999999999999875421 0 0011 2
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCccccccccccCCcc-ccCcchhHHHHHHHHHHhcCCCeEEEcCeEEEEEEEccC---
Q psy14408 591 IIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMT-RYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQ--- 666 (720)
Q Consensus 591 ~~~q~llea~rklG~~~~~d~ng~~~~~G~~~~~~g~-~~G~k~~aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~g--- 666 (720)
.....+.+++.++|+.........+ ..|.......+ ..|.|..+. .++. ++ ++.|++|++++.|++|+++++
T Consensus 179 ~~~~~~~~a~~e~G~~~~n~~~~d~-~~G~~~g~~i~~~~g~R~saa-~l~~-~~-~~~nl~Vl~~a~V~rIl~~~~~~~ 254 (587)
T PLN02785 179 PWQAALRDSLLEVGVSPFNGFTYDH-VYGTKVGGTIFDEFGRRHTAA-ELLA-AG-NPNKLRVLLHATVQKIVFDTSGKR 254 (587)
T ss_pred hHHHHHHHHHHHcCCCccCCCCCCC-ccceeeeEEEeCCCCEEcCHH-HHHh-hc-CCCCeEEEeCCEEEEEEEcCCCCC
Confidence 3567788899999986321111111 11111000011 234454444 3444 44 467899999999999999822
Q ss_pred CcEEEEEEEecCCcEEEE----EcCcEEEEccCCcchHHHHHHcCCCCccccccCCCC
Q psy14408 667 NVATGVEYVNSKGETVRV----TANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720 (720)
Q Consensus 667 GrAtGV~v~dt~G~e~tI----kAkK~VVVAAGa~~Sp~LLl~SGIgpk~~L~~~gip 720 (720)
++|+||++.+.+|++.++ +++|+||||||++.||+||++|||||+++|+++|||
T Consensus 255 ~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIp 312 (587)
T PLN02785 255 PRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIP 312 (587)
T ss_pred ceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCC
Confidence 389999998766654443 255689999999999999999999999999999997
No 7
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=99.78 E-value=2e-18 Score=197.11 Aligned_cols=245 Identities=17% Similarity=0.222 Sum_probs=145.2
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCCcccCCc---ccccccccccccc---------cccccccc--
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGM---SSVLSLSEFDHAY---------LAEPSQFA-- 499 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~ss~~Pg~---~~~~~~~~l~~~y---------~s~p~~~g-- 499 (720)
+||||||+|.+|+++|++||++ |+||+|||++...+... .++ ....+++.....+ .+.+....
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~-g~~v~~~e~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDA-GLKVAMVEIGAADSFLK--IGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVI 77 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHC-CCeEEEEeccCccCCCc--ccccccccccccccHHHHHHHHhhhccccccccccCCc
Confidence 6999999999999999999999 99999999987664210 000 0000011111000 00000000
Q ss_pred -------------cccccc---------ccee-eccccccCCcccccchhhhcCCchhHHHHHHhcCCCC--ChhHHHHH
Q psy14408 500 -------------GLGVRN---------ARIK-ITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGW--GYDETLKY 554 (720)
Q Consensus 500 -------------~l~l~~---------~~i~-~~~G~~lGGgStvN~~~~~r~s~~d~~eWae~g~~dW--sydellpy 554 (720)
...+.+ ..+. ..+-+.+||.++.|++.+.|....++ .| ...+| +|+++.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r-~g---~~~dWPI~y~eL~Py 153 (544)
T TIGR02462 78 PTLDPTAWSASIESFFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREER-PK---LSDDAAEDDAEWDRL 153 (544)
T ss_pred CCCCccccccCCCcceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhc-cC---CCCCCCCCHHHHHHH
Confidence 000000 0111 22457899999999999999887532 22 12588 99999999
Q ss_pred HHhhhhchhhhccccccccCcCCcccccccccccchHHHHHHHHHHHHcCC-CCCCCCCCccccccccccCCccccCcch
Q psy14408 555 FVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGY-PCPKDMNDRYVDVGFAELPGMTRYGLRF 633 (720)
Q Consensus 555 F~s~e~~~~~sld~d~~v~~~~G~L~va~~~~~~~~~~~q~llea~rklG~-~~~~d~ng~~~~~G~~~~~~g~~~G~k~ 633 (720)
|.++|++++.. |.......... ...+.+.+.+. |. ... .... .|.. .+|..+.+.
T Consensus 154 Y~~Ae~~~gv~-----------g~~~~~~~~~~---~~~~~~~~~~~--g~~~~~---~~Pl-A~~~----~~c~~~ak~ 209 (544)
T TIGR02462 154 YTKAESLIGTS-----------TDQFDESIRHN---LVLRKLQDEYK--GQRDFQ---PLPL-ACHR----RTDPTYVEW 209 (544)
T ss_pred HHHHHHHhCCC-----------CCcCCCcccch---hHHHHHHHHhc--cccccc---cCch-hhhc----cCCCcccee
Confidence 99999888543 10000011111 11222222221 22 111 1111 1111 134444444
Q ss_pred hHHHHHHHHHHh---cCCCeEEEcCeEEEEEEEcc-C-CcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHcC
Q psy14408 634 SAADAYLTPIAG---KRTNLYVLKRSKVTKVIIND-Q-NVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSG 707 (720)
Q Consensus 634 ~aa~a~L~~Aa~---e~aGVkIi~gt~VtkIl~e~-g-GrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SG 707 (720)
......+..+.+ +..+++|+.++.|++|+.++ + ++|+||++.+. +|++.+|+|+ .||||||++.|++||++|+
T Consensus 210 s~~~t~~~~~~~~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~-~vVLAagaIetpRLLL~S~ 288 (544)
T TIGR02462 210 HSADTVFDLQPNDDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKAD-VYVLACGAVHNPQILVNSG 288 (544)
T ss_pred cCCccchhhhhhhhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECC-EEEEccCchhhHHHHHhCC
Confidence 332233333330 24569999999999999973 2 57999999986 6888899998 6999999999999999998
Q ss_pred CCC
Q psy14408 708 IGP 710 (720)
Q Consensus 708 Igp 710 (720)
++.
T Consensus 289 ~~~ 291 (544)
T TIGR02462 289 FGQ 291 (544)
T ss_pred CCC
Confidence 874
No 8
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.64 E-value=3.7e-15 Score=156.82 Aligned_cols=62 Identities=32% Similarity=0.466 Sum_probs=47.6
Q ss_pred HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408 639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 709 (720)
Q Consensus 639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg 709 (720)
.|.+.+ ++.|++|+++++|++|..+ ++++.||++.+ | .|+|+ .||+|+|. |+..|+...|+.
T Consensus 152 ~l~~~~-~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~--g---~i~ad-~vV~a~G~-~s~~l~~~~~~~ 213 (358)
T PF01266_consen 152 ALAAEA-QRAGVEIRTGTEVTSIDVD-GGRVTGVRTSD--G---EIRAD-RVVLAAGA-WSPQLLPLLGLD 213 (358)
T ss_dssp HHHHHH-HHTT-EEEESEEEEEEEEE-TTEEEEEEETT--E---EEEEC-EEEE--GG-GHHHHHHTTTTS
T ss_pred hhHHHH-HHhhhhccccccccchhhc-ccccccccccc--c---ccccc-eeEecccc-cceeeeeccccc
Confidence 344444 4779999999999999999 88899998765 4 59997 59999996 788888888764
No 9
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.61 E-value=1.9e-14 Score=165.19 Aligned_cols=85 Identities=20% Similarity=0.231 Sum_probs=60.7
Q ss_pred cccccccCCccccCcchhHHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccC
Q psy14408 617 DVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAG 695 (720)
Q Consensus 617 ~~G~~~~~~g~~~G~k~~aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAG 695 (720)
..|..+...+..... ....+++..|. +.|++|+++++|++|+.+ +++++||++.+. +|+..+|+|+ .||+|||
T Consensus 135 ~~ga~~~~dg~vdp~--rl~~al~~~A~--~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~~~g~~~~i~A~-~VVnAaG 208 (546)
T PRK11101 135 LIGAVKVPDGTVDPF--RLTAANMLDAK--EHGAQILTYHEVTGLIRE-GDTVCGVRVRDHLTGETQEIHAP-VVVNAAG 208 (546)
T ss_pred ceEEEEecCcEECHH--HHHHHHHHHHH--hCCCEEEeccEEEEEEEc-CCeEEEEEEEEcCCCcEEEEECC-EEEECCC
Confidence 345555554332221 22334455555 789999999999999988 788999998764 4555689997 5999999
Q ss_pred CcchHHHHHHcCC
Q psy14408 696 AIANAQLLLLSGI 708 (720)
Q Consensus 696 a~~Sp~LLl~SGI 708 (720)
+ |+..|+...|+
T Consensus 209 ~-wa~~l~~~~g~ 220 (546)
T PRK11101 209 I-WGQHIAEYADL 220 (546)
T ss_pred h-hHHHHHHhcCC
Confidence 6 78888877765
No 10
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.59 E-value=1.9e-14 Score=161.48 Aligned_cols=43 Identities=28% Similarity=0.304 Sum_probs=37.8
Q ss_pred CcccCCCcccEEEECCcHHHHHHHHHHHhc-CCCcEEEEccCCC
Q psy14408 426 PYVKSGDCFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD 468 (720)
Q Consensus 426 ~~I~~d~eyDVVIIGSGiAGLvAA~~LAea-~G~KVLVLEKG~~ 468 (720)
..+..+.++||||||||++|+++|++|+++ +|++|+||||+..
T Consensus 17 ~~L~~~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 17 PPLVGDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred CCCCCCceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 356777889999999999999999999996 4899999999843
No 11
>PRK07121 hypothetical protein; Validated
Probab=99.55 E-value=1.6e-13 Score=155.26 Aligned_cols=66 Identities=29% Similarity=0.389 Sum_probs=50.7
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHH
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLL 705 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~ 705 (720)
..|...+ ++.|++|+++++|++|+.+++|+|+||++.+ +|+...|+|+|.||||+|++....-|++
T Consensus 181 ~~L~~~~-~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-~~~~~~i~a~k~VVlAtGg~~~N~em~~ 246 (492)
T PRK07121 181 DPLAKRA-AALGVQIRYDTRATRLIVDDDGRVVGVEARR-YGETVAIRARKGVVLAAGGFAMNREMVA 246 (492)
T ss_pred HHHHHHH-HhCCCEEEeCCEEEEEEECCCCCEEEEEEEe-CCcEEEEEeCCEEEECCCCcCcCHHHHH
Confidence 3444444 4789999999999999987357999999865 5566789994479999999876554444
No 12
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.53 E-value=1.8e-13 Score=150.52 Aligned_cols=64 Identities=31% Similarity=0.419 Sum_probs=48.7
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHH
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLL 705 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~ 705 (720)
..|.+.+ ++.|++|+.+++|++|+++ +++|+||++.+. +|+.++|+|+ .||||+|++.. .++.+
T Consensus 145 ~~l~~~~-~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~-aVIlAtGG~~~-~~~~~ 209 (417)
T PF00890_consen 145 EALAKAA-EEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAK-AVILATGGFGG-ELLRQ 209 (417)
T ss_dssp HHHHHHH-HHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEES-EEEE----BGG-HHHHH
T ss_pred HHHHHHH-hhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeee-EEEeccCcccc-ccccc
Confidence 3444444 4889999999999999998 889999999943 6888899998 79999999988 44433
No 13
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.52 E-value=3.1e-13 Score=156.41 Aligned_cols=66 Identities=23% Similarity=0.273 Sum_probs=53.2
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHH
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLL 705 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~ 705 (720)
..|.+++ ++.|++|+++++|++|+.+++|+|+||++.+ +|+...|+|+|.||||||++....-|++
T Consensus 217 ~~l~~~~-~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~-~~~~~~i~a~~aVilAtGGf~~N~em~~ 282 (584)
T PRK12835 217 ARLRLAL-KDAGVPLWLDSPMTELITDPDGAVVGAVVER-EGRTLRIGARRGVILATGGFDHDMDWRK 282 (584)
T ss_pred HHHHHHH-HhCCceEEeCCEEEEEEECCCCcEEEEEEEe-CCcEEEEEeceeEEEecCcccCCHHHHH
Confidence 3455556 5789999999999999997468999999865 6777889998679999999987554444
No 14
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.51 E-value=4e-13 Score=147.47 Aligned_cols=62 Identities=21% Similarity=0.318 Sum_probs=45.5
Q ss_pred HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408 639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 709 (720)
Q Consensus 639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg 709 (720)
++..+. +.|++++++++|++|+.++++++.+|++.+ | +++|+ +||||||+ ++..++...|+.
T Consensus 189 l~~~a~--~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~--g---~i~a~-~vVvaagg-~~~~l~~~~g~~ 250 (407)
T TIGR01373 189 YARGAD--RRGVDIIQNCEVTGFIRRDGGRVIGVETTR--G---FIGAK-KVGVAVAG-HSSVVAAMAGFR 250 (407)
T ss_pred HHHHHH--HCCCEEEeCCEEEEEEEcCCCcEEEEEeCC--c---eEECC-EEEECCCh-hhHHHHHHcCCC
Confidence 444444 789999999999999764256777776644 4 68997 49999998 556667666654
No 15
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.51 E-value=5.4e-13 Score=146.58 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=32.7
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 469 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~ 469 (720)
+||||||||++|+++|++||++ |++|+||||+...
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-g~~V~vle~~~~~ 36 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-GYQVTVFDRHRYA 36 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCC
Confidence 4999999999999999999999 9999999999643
No 16
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.50 E-value=6.5e-13 Score=145.70 Aligned_cols=122 Identities=19% Similarity=0.153 Sum_probs=69.3
Q ss_pred CcCCcccccccccccchHHHHHHHHHHHHcCCCCCC-----------CCCC-ccccccccccCCccccCcchhHHHHHHH
Q psy14408 574 GTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPK-----------DMND-RYVDVGFAELPGMTRYGLRFSAADAYLT 641 (720)
Q Consensus 574 ~~~G~L~va~~~~~~~~~~~q~llea~rklG~~~~~-----------d~ng-~~~~~G~~~~~~g~~~G~k~~aa~a~L~ 641 (720)
...|.+.+...... ....+...+.+++.|++.+. .+.. .....|..+......... .... ..|.
T Consensus 133 ~~~G~l~~a~~~~~--~~~l~~~~~~~~~~g~~~~~l~~~e~~~~~P~l~~~~~~~~ga~~~p~~g~~~p-~~~~-~~l~ 208 (416)
T PRK00711 133 RQGGTLQLFRTQQQ--LDAAAKDIAVLEEAGVPYELLDRDELAAVEPALAGVRHKLVGGLRLPNDETGDC-QLFT-QRLA 208 (416)
T ss_pred ccCcEEEEECCHHH--HHHHHHHHHHHHHcCCCceecCHHHHHHhCCCccCCCccceeEEECCCcccCCH-HHHH-HHHH
Confidence 44566666654443 34455556667778876541 0000 011223222222111111 1222 2333
Q ss_pred HHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCC
Q psy14408 642 PIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 708 (720)
Q Consensus 642 ~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGI 708 (720)
.++ ++.|++|+++++|++|..+ ++++.+|++.+ | +++|+ .||+|+|+ |+..++...|+
T Consensus 209 ~~~-~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~--~---~~~a~-~VV~a~G~-~~~~l~~~~g~ 266 (416)
T PRK00711 209 AMA-EQLGVKFRFNTPVDGLLVE-GGRITGVQTGG--G---VITAD-AYVVALGS-YSTALLKPLGV 266 (416)
T ss_pred HHH-HHCCCEEEcCCEEEEEEec-CCEEEEEEeCC--c---EEeCC-EEEECCCc-chHHHHHHhCC
Confidence 344 4789999999999999887 66666665432 3 68897 59999997 56677766554
No 17
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.49 E-value=8.1e-13 Score=150.29 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=43.5
Q ss_pred CC--eEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408 648 TN--LYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 709 (720)
Q Consensus 648 aG--VkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg 709 (720)
.| ++|+++++|++|..+ ++.+.+|++. .| +|+|+ .||+|||+ |+..|+.+.|++
T Consensus 228 ~G~~v~i~~~t~V~~I~~~-~~~~~~V~T~--~G---~i~A~-~VVvaAG~-~S~~La~~~Gi~ 283 (497)
T PTZ00383 228 PGKKISINLNTEVLNIERS-NDSLYKIHTN--RG---EIRAR-FVVVSACG-YSLLFAQKMGYG 283 (497)
T ss_pred cCCCEEEEeCCEEEEEEec-CCCeEEEEEC--CC---EEEeC-EEEECcCh-hHHHHHHHhCCC
Confidence 56 889999999999987 5655566543 24 68998 59999997 788999999985
No 18
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.49 E-value=9.3e-13 Score=142.38 Aligned_cols=61 Identities=30% Similarity=0.340 Sum_probs=43.2
Q ss_pred HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408 639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 709 (720)
Q Consensus 639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg 709 (720)
.|..++ ++.|++++.+++|++|..+ ++++ .|++. +| +|+|+ .||+|+|+ |+..++...|+.
T Consensus 150 ~l~~~~-~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~--~~---~i~a~-~vV~aaG~-~~~~l~~~~g~~ 210 (380)
T TIGR01377 150 ALQELA-EAHGATVRDGTKVVEIEPT-ELLV-TVKTT--KG---SYQAN-KLVVTAGA-WTSKLLSPLGIE 210 (380)
T ss_pred HHHHHH-HHcCCEEECCCeEEEEEec-CCeE-EEEeC--CC---EEEeC-EEEEecCc-chHHHhhhcccC
Confidence 344444 4789999999999999876 5443 34432 23 68897 59999998 566777776654
No 19
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.49 E-value=7.1e-13 Score=152.67 Aligned_cols=65 Identities=18% Similarity=0.305 Sum_probs=52.3
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHH
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLL 705 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~ 705 (720)
..|.+.+ ++.|++|+++++|++|+.+ +++|+||++.. +|+.++|+|+|.||||||++....-|++
T Consensus 212 ~~l~~~~-~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~-~g~~~~i~A~~aVIlAtGG~~~N~em~~ 276 (557)
T PRK12844 212 GRMLEAA-LAAGVPLWTNTPLTELIVE-DGRVVGVVVVR-DGREVLIRARRGVLLASGGFGHNAEMRK 276 (557)
T ss_pred HHHHHHH-HhCCCEEEeCCEEEEEEEe-CCEEEEEEEEE-CCeEEEEEecceEEEecCCccCCHHHHH
Confidence 3444444 4789999999999999998 89999999875 5767789997679999999988655443
No 20
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.49 E-value=9.1e-13 Score=150.24 Aligned_cols=64 Identities=20% Similarity=0.344 Sum_probs=50.8
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHH
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL 704 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl 704 (720)
.++..++ ++.|++|+++++|++|+.+ +++|+||++.. +|+.++|+|+|.||||||++....-|+
T Consensus 178 ~l~~~~~-~~~gv~i~~~t~~~~Li~~-~g~v~Gv~~~~-~g~~~~i~A~k~VIlAtGG~~~n~~m~ 241 (513)
T PRK12837 178 RFLAALA-RFPNARLRLNTPLVELVVE-DGRVVGAVVER-GGERRRVRARRGVLLAAGGFEQNDDMR 241 (513)
T ss_pred HHHHHHH-hCCCCEEEeCCEEEEEEec-CCEEEEEEEEE-CCcEEEEEeCceEEEeCCCccCCHHHH
Confidence 3455544 4569999999999999998 89999998865 577788999767999999996544333
No 21
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.48 E-value=6.9e-13 Score=155.10 Aligned_cols=57 Identities=25% Similarity=0.367 Sum_probs=46.9
Q ss_pred HHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcch
Q psy14408 640 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 699 (720)
Q Consensus 640 L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~S 699 (720)
|.+.+ ++.|++|++++.|++|+.+ +|+|+||.+.+. +|....|.|+ .||||||++..
T Consensus 176 L~~~~-~~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g~ 233 (640)
T PRK07573 176 LSRQI-AAGTVKMYTRTEMLDLVVV-DGRARGIVARNLVTGEIERHTAD-AVVLATGGYGN 233 (640)
T ss_pred HHHHH-HhcCCEEEeceEEEEEEEe-CCEEEEEEEEECCCCcEEEEECC-EEEECCCCccc
Confidence 33344 4789999999999999998 789999999864 5666789997 69999999764
No 22
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.48 E-value=1.2e-12 Score=146.63 Aligned_cols=68 Identities=22% Similarity=0.273 Sum_probs=52.8
Q ss_pred HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408 639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 709 (720)
Q Consensus 639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg 709 (720)
.|.+.+ ++.|++|+.+++|++|+.+ +++|+||++.+.+|+...|+|+ .||+|+|++.....+++..++
T Consensus 136 ~l~~~~-~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~~~g~~~~i~a~-~VIlAtGg~~~n~~~~~~~~~ 203 (466)
T PRK08274 136 ALYRSA-ERLGVEIRYDAPVTALELD-DGRFVGARAGSAAGGAERIRAK-AVVLAAGGFESNREWLREAWG 203 (466)
T ss_pred HHHHHH-HHCCCEEEcCCEEEEEEec-CCeEEEEEEEccCCceEEEECC-EEEECCCCCCCCHHHHHhhcC
Confidence 344444 4789999999999999987 7899999986445656788996 699999998877666654443
No 23
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.48 E-value=1.2e-12 Score=151.16 Aligned_cols=64 Identities=20% Similarity=0.258 Sum_probs=50.9
Q ss_pred HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHH
Q psy14408 639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLL 705 (720)
Q Consensus 639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~ 705 (720)
.|.+.+ ++.|++|+++++|++|+.+ +|+|+||.+.+ +|+++.|+|+|.||||+|++....-|++
T Consensus 222 ~L~~~~-~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~-~g~~~~i~a~kaVILAtGGf~~n~em~~ 285 (564)
T PRK12845 222 GLFAGV-LRAGIPIWTETSLVRLTDD-GGRVTGAVVDH-RGREVTVTARRGVVLAAGGFDHDMEMRW 285 (564)
T ss_pred HHHHHH-HHCCCEEEecCEeeEEEec-CCEEEEEEEEE-CCcEEEEEcCCEEEEecCCccccHHHHH
Confidence 344444 4789999999999999987 78999998765 5666788887789999999987654433
No 24
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.47 E-value=8.2e-13 Score=150.37 Aligned_cols=60 Identities=20% Similarity=0.276 Sum_probs=47.5
Q ss_pred HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHH
Q psy14408 639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQ 701 (720)
Q Consensus 639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~ 701 (720)
.|.+.+ ++.|++|+++++|++|+.+ +|+|+||++...+|+..+|+|+ .||+|+|++....
T Consensus 195 ~L~~~~-~~~gv~i~~~t~v~~l~~~-~g~V~Gv~~~~~~g~~~~i~a~-~VVlAtGG~~~n~ 254 (506)
T PRK06481 195 GLLKNV-QERKIPLFVNADVTKITEK-DGKVTGVKVKINGKETKTISSK-AVVVTTGGFGANK 254 (506)
T ss_pred HHHHHH-HHcCCeEEeCCeeEEEEec-CCEEEEEEEEeCCCeEEEEecC-eEEEeCCCcccCH
Confidence 344444 4789999999999999987 7899999987645555689997 6999999887643
No 25
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.45 E-value=1.7e-12 Score=140.07 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=33.5
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~ 468 (720)
.++||||||||++|+++|++|+++ |++|+||||+..
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~-g~~V~lie~~~~ 37 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARR-GLRVLGLDRFMP 37 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHC-CCeEEEEecccC
Confidence 468999999999999999999999 999999999853
No 26
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.44 E-value=1.8e-12 Score=149.56 Aligned_cols=50 Identities=10% Similarity=0.151 Sum_probs=43.7
Q ss_pred CCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408 647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA 698 (720)
Q Consensus 647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~ 698 (720)
+.|++|++++.|++|+.+ +|+|+||.+.+. +|+...|+|+ .||||||++.
T Consensus 148 ~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~ 198 (566)
T PRK06452 148 GLNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKTK-AVVLATGGMG 198 (566)
T ss_pred hCCCEEEeCcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEeC-eEEECCCccc
Confidence 579999999999999998 899999998875 4556788996 7999999986
No 27
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.44 E-value=3.4e-12 Score=144.85 Aligned_cols=128 Identities=12% Similarity=-0.024 Sum_probs=72.9
Q ss_pred cCCcccccccccccchHHHHHHHHHHHHcCCCC--C--C---------CCCC-c---cccccccccCCccccCcchhHHH
Q psy14408 575 TQGYLPVGLFKNKENNIIREIFETSAQELGYPC--P--K---------DMND-R---YVDVGFAELPGMTRYGLRFSAAD 637 (720)
Q Consensus 575 ~~G~L~va~~~~~~~~~~~q~llea~rklG~~~--~--~---------d~ng-~---~~~~G~~~~~~g~~~G~k~~aa~ 637 (720)
..|.|.+...+.+ ....+...+.+++.|+.. + . +... + ....|+.++..+...... ....
T Consensus 106 ~~G~L~va~~e~e--~~~L~~~~~~~~~~g~~~~~~~~l~~~el~~~eP~l~~~r~~~~~~gAl~~p~~g~Vdp~-~l~~ 182 (483)
T TIGR01320 106 PVPHVSFVHGSDG--VAYLKKRYEALKGHPLFEGMEFSEDPATFAEWLPLMAAGRDFSEPVAANWAAEGTDVDFG-ALTK 182 (483)
T ss_pred CCCeEEEEEChHH--HHHHHHHHHHHhcCCCccCceEeCCHHHHHHhCCCcccCCCCCCceEEEEeCCCEEECHH-HHHH
Confidence 4566666655544 445555556666665421 1 0 1100 0 012344444433222222 2222
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHcCCCC
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIGP 710 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgp 710 (720)
+++..+. +.|++|+++++|++|+.++++.+ .|.+.++ .|+..+|+|+ .||+|||+ |+..|+.+.|+..
T Consensus 183 aL~~~a~--~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~-~VV~AAG~-~s~~La~~~Gi~~ 251 (483)
T TIGR01320 183 QLLGYLV--QNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTR-FVFVGAGG-GALPLLQKSGIPE 251 (483)
T ss_pred HHHHHHH--hCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECC-EEEECCCc-chHHHHHHcCCCc
Confidence 3444444 67999999999999987623333 3444332 3444578997 59999997 7888999999864
No 28
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.44 E-value=2.5e-12 Score=143.19 Aligned_cols=208 Identities=19% Similarity=0.107 Sum_probs=118.3
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCC--CcEEEEccCCCCCCCcccCCccccccccccccccccccccccccccccccee
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSS--LKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIK 509 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G--~KVLVLEKG~~~~~ss~~Pg~~~~~~~~~l~~~y~s~p~~~g~l~l~~~~i~ 509 (720)
.++||||||||+.|+++|+.|++. + ++|+||||...++..+.- . +.+ +-..++.
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~-~p~~~V~llEk~~~~a~~sS~--~------------------NSg---viHag~~ 57 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEY-EPDLSVALLEKEDGVAQESSS--N------------------NSG---VIHAGLY 57 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHh-CCCceEEEEEccCcccccccc--C------------------ccc---ceecccc
Confidence 578999999999999999999998 6 999999998665332110 0 000 0000000
Q ss_pred eccccccCCcccccchhhhcCCchhHHHHHHhcCCCCChhHHHHHHHhhhhchhhhccccccccCcCCcccccccccccc
Q psy14408 510 ITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKEN 589 (720)
Q Consensus 510 ~~~G~~lGGgStvN~~~~~r~s~~d~~eWae~g~~dWsydellpyF~s~e~~~~~sld~d~~v~~~~G~L~va~~~~~~~ 589 (720)
...+ ....-++ ......|. .+.++.. . -+...|.+.++..+.+
T Consensus 58 y~p~-------slka~l~----~~g~~~~~-------------~~~kq~~------~-----~f~~~g~l~vA~~e~e-- 100 (429)
T COG0579 58 YTPG-------SLKAKLC----VAGNINEF-------------AICKQLG------I-----PFINCGKLSVATGEEE-- 100 (429)
T ss_pred CCCc-------chhhHHH----HHHHHHHH-------------HHHHHhC------C-----cccccCeEEEEEChHH--
Confidence 1000 0001111 11111111 1111111 0 1222366777666665
Q ss_pred hHHHHHHHHHHHHcCCCCC-----------CCCCCccccccccccCCccccCcchhHHHHHHHHHHhcCCCeEEEcCeEE
Q psy14408 590 NIIREIFETSAQELGYPCP-----------KDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKV 658 (720)
Q Consensus 590 ~~~~q~llea~rklG~~~~-----------~d~ng~~~~~G~~~~~~g~~~G~k~~aa~a~L~~Aa~e~aGVkIi~gt~V 658 (720)
...++.+.+.+++.|+... ++..... ..|..+.+.+....... ...+++..+. +.|++|+.+++|
T Consensus 101 ~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~-~~aal~~p~~giV~~~~-~t~~l~e~a~--~~g~~i~ln~eV 176 (429)
T COG0579 101 VERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEG-AVAALLVPSGGIVDPGE-LTRALAEEAQ--ANGVELRLNTEV 176 (429)
T ss_pred HHHHHHHHHHHhhCCCcceeecCHHHHHhhCcccccc-ceeeEEcCCCceEcHHH-HHHHHHHHHH--HcCCEEEecCee
Confidence 5677777788888777621 1111212 33444444333322222 2334555555 679999999999
Q ss_pred EEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCCC
Q psy14408 659 TKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP 710 (720)
Q Consensus 659 tkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgp 710 (720)
++|+.+++| +.-+.+. +|++. ++|+ .||.|||. .+..|++++|+..
T Consensus 177 ~~i~~~~dg-~~~~~~~--~g~~~-~~ak-~Vin~AGl-~Ad~la~~~g~~~ 222 (429)
T COG0579 177 TGIEKQSDG-VFVLNTS--NGEET-LEAK-FVINAAGL-YADPLAQMAGIPE 222 (429)
T ss_pred eEEEEeCCc-eEEEEec--CCcEE-EEee-EEEECCch-hHHHHHHHhCCCc
Confidence 999987333 3333332 46544 9997 59999996 7889999999987
No 29
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.43 E-value=2.2e-12 Score=149.58 Aligned_cols=58 Identities=16% Similarity=0.239 Sum_probs=46.3
Q ss_pred HHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcch
Q psy14408 640 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 699 (720)
Q Consensus 640 L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~S 699 (720)
|...+ ++.|++|++++.|++|+.+++|+|.||...+. +|+...|+|+ .||||||++..
T Consensus 149 L~~~~-~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 207 (588)
T PRK08958 149 LYQQN-LKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKAR-ATVLATGGAGR 207 (588)
T ss_pred HHHHh-hhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcC-eEEECCCCccc
Confidence 33333 36799999999999999853689999998653 5777789996 79999999764
No 30
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.43 E-value=4.3e-12 Score=139.14 Aligned_cols=61 Identities=18% Similarity=0.179 Sum_probs=44.6
Q ss_pred HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408 639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 709 (720)
Q Consensus 639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg 709 (720)
.|.+++ ++.|++|+++++|++|..+ ++++ +|++. +| +++|+ .||+|+|+ |+..++...|+.
T Consensus 154 aL~~~~-~~~Gv~i~~~~~V~~i~~~-~~~~-~V~~~--~g---~i~ad-~vV~A~G~-~s~~l~~~~g~~ 214 (393)
T PRK11728 154 AMAELI-QARGGEIRLGAEVTALDEH-ANGV-VVRTT--QG---EYEAR-TLINCAGL-MSDRLAKMAGLE 214 (393)
T ss_pred HHHHHH-HhCCCEEEcCCEEEEEEec-CCeE-EEEEC--CC---EEEeC-EEEECCCc-chHHHHHHhCCC
Confidence 344444 4789999999999999876 4443 34432 24 68997 59999997 788888888875
No 31
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.43 E-value=3.8e-12 Score=144.59 Aligned_cols=87 Identities=23% Similarity=0.242 Sum_probs=66.4
Q ss_pred cccccccCCccccCcchhHHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccC
Q psy14408 617 DVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAG 695 (720)
Q Consensus 617 ~~G~~~~~~g~~~G~k~~aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAG 695 (720)
..|...+..+.....+... ..+++|. +.|+++++.++|++++.+ ++ ++||+++|. +|+++.|+|+ .||.|||
T Consensus 150 l~ga~~y~D~~vddaRLv~--~~a~~A~--~~Ga~il~~~~v~~~~re-~~-v~gV~~~D~~tg~~~~ira~-~VVNAaG 222 (532)
T COG0578 150 LKGAFRYPDGVVDDARLVA--ANARDAA--EHGAEILTYTRVESLRRE-GG-VWGVEVEDRETGETYEIRAR-AVVNAAG 222 (532)
T ss_pred ccceEEEccceechHHHHH--HHHHHHH--hcccchhhcceeeeeeec-CC-EEEEEEEecCCCcEEEEEcC-EEEECCC
Confidence 4445555554444444322 3455666 899999999999999998 67 999999986 6888999997 5888888
Q ss_pred CcchHHHHHHcCCCCc
Q psy14408 696 AIANAQLLLLSGIGPK 711 (720)
Q Consensus 696 a~~Sp~LLl~SGIgpk 711 (720)
. |+..++...|..+.
T Consensus 223 p-W~d~i~~~~~~~~~ 237 (532)
T COG0578 223 P-WVDEILEMAGLEQS 237 (532)
T ss_pred c-cHHHHHHhhcccCC
Confidence 6 89999999877653
No 32
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.43 E-value=2e-12 Score=139.70 Aligned_cols=34 Identities=35% Similarity=0.484 Sum_probs=32.0
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~ 468 (720)
+||||||||++|+++|++|+++ |++|+||||+..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~-G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARR-GLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence 5999999999999999999999 999999999853
No 33
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.41 E-value=7e-12 Score=139.46 Aligned_cols=64 Identities=23% Similarity=0.268 Sum_probs=48.4
Q ss_pred HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHH
Q psy14408 639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL 704 (720)
Q Consensus 639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl 704 (720)
.|.+.+ ++.|++|+++++|++|+.+++++++||++.+.+|....++++ .||+|+|++....-|+
T Consensus 135 ~l~~~~-~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~-~VVlAtGg~~~n~~m~ 198 (439)
T TIGR01813 135 KLYKKA-KKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAK-AVVLATGGFGSNKEMI 198 (439)
T ss_pred HHHHHH-HHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecc-eEEEecCCCCCCHHHH
Confidence 344444 478999999999999998646789999988645554567886 6999999887644333
No 34
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.40 E-value=1.1e-11 Score=144.70 Aligned_cols=66 Identities=20% Similarity=0.234 Sum_probs=52.5
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEcc-CCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHcC
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIIND-QNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSG 707 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~-gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SG 707 (720)
.++..+. +.|++|+++++|++|+.++ +++++||++.+. +|++++|+|+ .||+|||+ |+..++...|
T Consensus 237 al~~~A~--~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~-~VVnAaGa-ws~~l~~~~g 304 (627)
T PLN02464 237 ALACTAA--LAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAK-VVVNAAGP-FCDEVRKMAD 304 (627)
T ss_pred HHHHHHH--hCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeC-EEEECCCH-hHHHHHHhcc
Confidence 4555555 7899999999999998863 378999998764 4555679997 59999997 7888888775
No 35
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.40 E-value=4.8e-12 Score=147.94 Aligned_cols=52 Identities=21% Similarity=0.314 Sum_probs=44.1
Q ss_pred CCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcch
Q psy14408 647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 699 (720)
Q Consensus 647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~S 699 (720)
+.|++|++++.|++|+.+++|+|.||.+.+. +|+...|+|+ .||||+|++..
T Consensus 199 ~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g~ 251 (635)
T PLN00128 199 KHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAH-STILATGGYGR 251 (635)
T ss_pred hCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcC-eEEECCCCCcc
Confidence 6799999999999998863589999998764 5777789997 69999999864
No 36
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.40 E-value=4e-12 Score=148.13 Aligned_cols=59 Identities=14% Similarity=0.193 Sum_probs=46.7
Q ss_pred HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcch
Q psy14408 639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 699 (720)
Q Consensus 639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~S 699 (720)
.|.+.+ ++.|++|++++.|++|+.+++|+|.||.+.+. +|+...|+|+ .||||+|++..
T Consensus 171 ~L~~~a-~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 230 (617)
T PTZ00139 171 TLYGQS-LKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAH-YTVIATGGYGR 230 (617)
T ss_pred HHHHHH-HhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECC-cEEEeCCCCcc
Confidence 344444 47899999999999999832789999988653 5777789997 69999999853
No 37
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.39 E-value=5e-12 Score=141.40 Aligned_cols=56 Identities=21% Similarity=0.436 Sum_probs=44.0
Q ss_pred HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcc
Q psy14408 639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIA 698 (720)
Q Consensus 639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~ 698 (720)
++..++ ++.|++|++++.|++|+.+ +++|.||.+.+ +|+...|+|+ .||||+|++.
T Consensus 134 L~~~~~-~~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~-~g~~~~i~Ak-~VILAtGG~~ 189 (433)
T PRK06175 134 LLKKVK-KRKNITIIENCYLVDIIEN-DNTCIGAICLK-DNKQINIYSK-VTILATGGIG 189 (433)
T ss_pred HHHHHH-hcCCCEEEECcEeeeeEec-CCEEEEEEEEE-CCcEEEEEcC-eEEEccCccc
Confidence 343443 3569999999999999987 78899987665 4555679996 6999999975
No 38
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.39 E-value=7.8e-12 Score=144.09 Aligned_cols=66 Identities=24% Similarity=0.321 Sum_probs=53.4
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHc
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLS 706 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~S 706 (720)
..|.+.+ ++.|++|+++++|++|+.+ +++|+||++.+ +|+...|+|++.||||||++.....|++.
T Consensus 212 ~~L~~~~-~~~gv~v~~~t~v~~l~~~-~g~v~Gv~~~~-~g~~~~i~A~~~VIlAtGG~~~n~~m~~~ 277 (557)
T PRK07843 212 AGLRIGL-QRAGVPVLLNTPLTDLYVE-DGRVTGVHAAE-SGEPQLIRARRGVILASGGFEHNEQMRAK 277 (557)
T ss_pred HHHHHHH-HcCCCEEEeCCEEEEEEEe-CCEEEEEEEEe-CCcEEEEEeceeEEEccCCcCcCHHHHHH
Confidence 3445555 5789999999999999988 78999999875 56677899976799999999887666554
No 39
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.39 E-value=5.9e-12 Score=146.26 Aligned_cols=59 Identities=24% Similarity=0.262 Sum_probs=46.8
Q ss_pred HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcch
Q psy14408 639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 699 (720)
Q Consensus 639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~S 699 (720)
.|.+.+ ++.|++|++++.|++|+.+++|+|.||.+.+. +|+...|.|+ .||||||++..
T Consensus 154 ~L~~~~-~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 213 (598)
T PRK09078 154 TLYQQS-LKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAH-MVVLATGGYGR 213 (598)
T ss_pred HHHHHH-hhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcC-EEEECCCCCcc
Confidence 344433 36899999999999999873479999998653 5766789996 69999999864
No 40
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.38 E-value=5.6e-12 Score=145.76 Aligned_cols=57 Identities=23% Similarity=0.308 Sum_probs=45.3
Q ss_pred HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408 639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA 698 (720)
Q Consensus 639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~ 698 (720)
.|.+.+ ++.|++|++++.|++|+.+ +|+|.||...+. +|+...|+|+ .||+|+|++.
T Consensus 140 ~L~~~~-~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVVlATGG~~ 197 (575)
T PRK05945 140 ELVNNL-RRYGVTIYDEWYVMRLILE-DNQAKGVVMYHIADGRLEVVRAK-AVMFATGGYG 197 (575)
T ss_pred HHHHHH-hhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECC-EEEECCCCCc
Confidence 344434 3679999999999999988 889999987543 4655678996 6999999975
No 41
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.38 E-value=1.4e-11 Score=142.38 Aligned_cols=63 Identities=17% Similarity=0.316 Sum_probs=48.9
Q ss_pred HHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHH
Q psy14408 640 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLL 705 (720)
Q Consensus 640 L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~ 705 (720)
|.+.+ ++.|++|++++.|++|+.+ +++|+||++.+ .+++..|+|+|.||||+|++....-+++
T Consensus 220 L~~~~-~~~Gv~i~~~~~v~~l~~~-~g~V~GV~~~~-~~~~~~i~a~k~VVlAtGg~~~n~~~~~ 282 (574)
T PRK12842 220 LAKSA-LDLGIPILTGTPARELLTE-GGRVVGARVID-AGGERRITARRGVVLACGGFSHDLARIA 282 (574)
T ss_pred HHHHH-HhCCCEEEeCCEEEEEEee-CCEEEEEEEEc-CCceEEEEeCCEEEEcCCCccchHHHHH
Confidence 33434 4789999999999999998 88999999876 3344568886679999999875554443
No 42
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.37 E-value=1e-11 Score=144.10 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=41.4
Q ss_pred CeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcch
Q psy14408 649 NLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 699 (720)
Q Consensus 649 GVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~S 699 (720)
+++|++++.|++|+.+++|+|.||.+.+. +|+...|+|+ .||||||++..
T Consensus 151 ~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 201 (589)
T PRK08641 151 LVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPAD-AVIMATGGPGI 201 (589)
T ss_pred CcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECC-EEEECCCCCcC
Confidence 38999999999999853689999999875 4555678896 79999999864
No 43
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.37 E-value=7.1e-12 Score=155.29 Aligned_cols=53 Identities=25% Similarity=0.465 Sum_probs=44.7
Q ss_pred CCeEEEcCeEEEEEEEcc-----C---CcEEEEEEEec---CCcEEEEEcCcEEEEccCCcchHH
Q psy14408 648 TNLYVLKRSKVTKVIIND-----Q---NVATGVEYVNS---KGETVRVTANKEVILTAGAIANAQ 701 (720)
Q Consensus 648 aGVkIi~gt~VtkIl~e~-----g---GrAtGV~v~dt---~G~e~tIkAkK~VVVAAGa~~Sp~ 701 (720)
.|++|+++++|++|+.++ + ++|+||++++. +|+...|+|+ .||||||++....
T Consensus 560 ~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~Ak-aVILATGGf~~N~ 623 (1167)
T PTZ00306 560 GRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLAD-AVILATGGFSNDH 623 (1167)
T ss_pred CCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEec-eEEEecCCcccCc
Confidence 599999999999999862 1 38999999875 6777789996 6999999998754
No 44
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.36 E-value=1e-11 Score=145.77 Aligned_cols=56 Identities=16% Similarity=0.170 Sum_probs=46.5
Q ss_pred HHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408 640 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA 698 (720)
Q Consensus 640 L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~ 698 (720)
|...+ ++.|++|++++.|++|+.+ +|+|.||.+.+. +|....|.|+ .||||||++.
T Consensus 164 L~~~~-~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~G~~~~i~Ak-aVVLATGG~g 220 (657)
T PRK08626 164 VDNEA-IKLGVPVHDRKEAIALIHD-GKRCYGAVVRCLITGELRAYVAK-ATLIATGGYG 220 (657)
T ss_pred HHHHH-HhCCCEEEeeEEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcC-eEEECCCccc
Confidence 33434 4789999999999999998 899999999864 6776788996 6999999876
No 45
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.36 E-value=1.6e-11 Score=141.16 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=44.3
Q ss_pred HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEe----cCCcEEEEEcCcEEEEccCCcc
Q psy14408 639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVN----SKGETVRVTANKEVILTAGAIA 698 (720)
Q Consensus 639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~d----t~G~e~tIkAkK~VVVAAGa~~ 698 (720)
.|.+++ ++.|++|++++.|++|+.+++|+|.||.+.+ ..++...|+|+ .||+|+|++.
T Consensus 149 ~L~~~~-~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak-~VIlATGG~~ 210 (541)
T PRK07804 149 ALDAAV-RADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAP-AVVLATGGLG 210 (541)
T ss_pred HHHHHH-HhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcC-eEEECCCCCC
Confidence 444444 4778999999999999987347999998873 12334678996 6999999975
No 46
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.35 E-value=4.5e-11 Score=138.80 Aligned_cols=53 Identities=11% Similarity=0.171 Sum_probs=43.6
Q ss_pred cCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcch
Q psy14408 646 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 699 (720)
Q Consensus 646 e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~S 699 (720)
.+.|++|++++.|++|+.+++|+|.||.+.+. +|+...|+|+ .||+|+|++..
T Consensus 159 ~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 212 (591)
T PRK07057 159 VAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAK-TTLFATGGAGR 212 (591)
T ss_pred HhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECC-eEEECCCCccc
Confidence 37899999999999999863589999998754 4655678886 69999999753
No 47
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.35 E-value=2.4e-11 Score=138.28 Aligned_cols=68 Identities=25% Similarity=0.237 Sum_probs=47.0
Q ss_pred HHHHHHhcCCC-eEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHcCCCC
Q psy14408 639 YLTPIAGKRTN-LYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIGP 710 (720)
Q Consensus 639 ~L~~Aa~e~aG-VkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgp 710 (720)
.|.+++ ++.| ++|+++++|++|..++++++ .|.+.++ .|+..+|+|+ .||+|||+ |+..++..+|+..
T Consensus 188 aL~~~a-~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~-~VVvaAGg-~s~~L~~~~Gi~~ 257 (494)
T PRK05257 188 QLVGYL-QKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAK-FVFIGAGG-GALPLLQKSGIPE 257 (494)
T ss_pred HHHHHH-HhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcC-EEEECCCc-chHHHHHHcCCCc
Confidence 344444 3555 89999999999998524433 3444322 3433468997 59999997 7888999998873
No 48
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.35 E-value=1.2e-11 Score=142.36 Aligned_cols=57 Identities=19% Similarity=0.217 Sum_probs=45.6
Q ss_pred HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408 639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA 698 (720)
Q Consensus 639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~ 698 (720)
.|.+.+ ++.|++|++++.|++|+.+ +|+|.||.+.+. +|+...|+|+ .||+|+|++.
T Consensus 134 ~L~~~~-~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-~VVlAtGG~~ 191 (566)
T TIGR01812 134 TLYEQC-LKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAK-AVVLATGGYG 191 (566)
T ss_pred HHHHHH-HHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECC-eEEECCCccc
Confidence 344433 3669999999999999998 899999988754 5655689996 6999999975
No 49
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.35 E-value=1.5e-11 Score=141.28 Aligned_cols=58 Identities=19% Similarity=0.362 Sum_probs=45.8
Q ss_pred HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEe-cCCcEEEEEcCcEEEEccCCcc
Q psy14408 639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVN-SKGETVRVTANKEVILTAGAIA 698 (720)
Q Consensus 639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~d-t~G~e~tIkAkK~VVVAAGa~~ 698 (720)
.|.+.+ ++.|++|++++.|++|+.+++++|+||.+.+ .+|+...|+|+ .||+|+|++.
T Consensus 139 ~L~~~~-~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~Ak-aVIlATGG~~ 197 (543)
T PRK06263 139 GLMEYL-IKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAK-ATILATGGAG 197 (543)
T ss_pred HHHHHH-hcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcC-cEEECCCCCC
Confidence 344444 3689999999999999987334599998876 46766789996 6999999975
No 50
>PLN02815 L-aspartate oxidase
Probab=99.34 E-value=1.5e-11 Score=142.77 Aligned_cols=59 Identities=17% Similarity=0.394 Sum_probs=44.4
Q ss_pred HHHHHHhcCCCeEEEcCeEEEEEEEcc-CC--cEEEEEEEec-CCcEEEEEcCcEEEEccCCcch
Q psy14408 639 YLTPIAGKRTNLYVLKRSKVTKVIIND-QN--VATGVEYVNS-KGETVRVTANKEVILTAGAIAN 699 (720)
Q Consensus 639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~-gG--rAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~S 699 (720)
++..+. ++.|++|++++.|++|+.++ ++ +|.||.+.+. +|....|+|+ .||||||++..
T Consensus 161 L~~~~~-~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g~ 223 (594)
T PLN02815 161 LLEAVK-NDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISK-VTLLASGGAGH 223 (594)
T ss_pred HHHHHH-hcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEec-eEEEcCCccee
Confidence 333333 34599999999999999862 33 3899998754 5766788996 79999999863
No 51
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.33 E-value=2.2e-11 Score=131.63 Aligned_cols=38 Identities=29% Similarity=0.410 Sum_probs=34.4
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408 431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 469 (720)
Q Consensus 431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~ 469 (720)
+..+||||||||++|+++|++|+++ |.+|+|+|++...
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~-G~~V~vie~~~~~ 39 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAER-GADVTVLEAGEAG 39 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHc-CCEEEEEecCccC
Confidence 3567999999999999999999999 9999999998544
No 52
>PRK08275 putative oxidoreductase; Provisional
Probab=99.33 E-value=2.1e-11 Score=140.37 Aligned_cols=59 Identities=24% Similarity=0.334 Sum_probs=46.3
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA 698 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~ 698 (720)
..|...+ ++.|++|++++.|++|+.+++|+|.||.+.+. +|....|+|+ .||+|+|++.
T Consensus 141 ~~L~~~~-~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak-~VIlATGG~~ 200 (554)
T PRK08275 141 KVLYRQL-KRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAK-AVILCCGAAG 200 (554)
T ss_pred HHHHHHH-HHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECC-EEEECCCCcc
Confidence 3455544 47899999999999999863578999987654 5665678996 6999999975
No 53
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.33 E-value=1.7e-11 Score=143.12 Aligned_cols=47 Identities=21% Similarity=0.284 Sum_probs=40.4
Q ss_pred eEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408 650 LYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA 698 (720)
Q Consensus 650 VkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~ 698 (720)
++|+.++.|++|+.+ +|+|.||.+.+. +|+...|+|+ .||||+|++.
T Consensus 166 v~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-~VVlATGG~~ 213 (626)
T PRK07803 166 IKVFAECTITELLKD-GGRIAGAFGYWRESGRFVLFEAP-AVVLATGGIG 213 (626)
T ss_pred eEEEeCCEEEEEEEE-CCEEEEEEEEECCCCeEEEEEcC-eEEECCCccc
Confidence 999999999999988 889999987653 5666789997 6999999865
No 54
>KOG0260|consensus
Probab=99.32 E-value=2.5e-11 Score=142.98 Aligned_cols=22 Identities=50% Similarity=0.896 Sum_probs=13.7
Q ss_pred CCCCCCCCCCccccccCCCCCc
Q psy14408 224 NPESPLYSDSPYYYRNLPLYNP 245 (720)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~ 245 (720)
+||||-||-+|-|--.-|-|+|
T Consensus 1572 sptspsys~~~~ysp~sp~ysp 1593 (1605)
T KOG0260|consen 1572 SPTSPSYSTSPSYSPTSPSYSP 1593 (1605)
T ss_pred CCCCCCccCCCCCCCCCCCCCC
Confidence 5667777776666555555544
No 55
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.31 E-value=2.7e-11 Score=138.28 Aligned_cols=58 Identities=24% Similarity=0.300 Sum_probs=46.8
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcch
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 699 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~S 699 (720)
..|.+++ +.|++|++++.|++|+.+ +++|.||.+.+.+|+...++|+ .||||+|++..
T Consensus 134 ~~L~~~~--~~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~g~~~~i~Ak-~VVlATGG~~~ 191 (510)
T PRK08071 134 EHLLQEL--VPHVTVVEQEMVIDLIIE-NGRCIGVLTKDSEGKLKRYYAD-YVVLASGGCGG 191 (510)
T ss_pred HHHHHHH--hcCCEEEECeEhhheeec-CCEEEEEEEEECCCcEEEEEcC-eEEEecCCCcc
Confidence 3444445 369999999999999987 8899999987755666688997 69999999763
No 56
>PRK12839 hypothetical protein; Provisional
Probab=99.31 E-value=4.2e-11 Score=138.60 Aligned_cols=58 Identities=21% Similarity=0.266 Sum_probs=45.3
Q ss_pred cCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHH
Q psy14408 646 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL 704 (720)
Q Consensus 646 e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl 704 (720)
++.|++|+.++.|++|+.+++|+|+||++.+.+|. .++.+.|.||||||++....-++
T Consensus 225 ~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~-~~i~aak~VVLAtGGf~~n~~~~ 282 (572)
T PRK12839 225 DDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGA-VTVEATRGVVLATGGFPNDVDRR 282 (572)
T ss_pred HHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCc-EEEEeCCEEEEcCCCcccCHHHH
Confidence 37899999999999998864689999998764454 45666457999999988754433
No 57
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.31 E-value=7.1e-11 Score=137.58 Aligned_cols=57 Identities=23% Similarity=0.307 Sum_probs=43.9
Q ss_pred HHHHHHhcCC-CeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408 639 YLTPIAGKRT-NLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA 698 (720)
Q Consensus 639 ~L~~Aa~e~a-GVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~ 698 (720)
.|..++ ++. |++|++++.|++|+.+ +++|+||.+.+. +|+...++|+ .||+|+|++.
T Consensus 137 ~L~~~a-~~~ggV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~ 195 (608)
T PRK06854 137 IVAEAA-KKALGDNVLNRVFITDLLVD-DNRIAGAVGFSVRENKFYVFKAK-AVIVATGGAA 195 (608)
T ss_pred HHHHHH-HhcCCCEEEeCCEEEEEEEe-CCEEEEEEEEEccCCcEEEEECC-EEEECCCchh
Confidence 343444 354 5999999999999987 789999987543 4655689997 6999999865
No 58
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.31 E-value=4.1e-11 Score=138.85 Aligned_cols=50 Identities=18% Similarity=0.378 Sum_probs=42.4
Q ss_pred CCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408 647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA 698 (720)
Q Consensus 647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~ 698 (720)
..|+++++++.|++|+.+ +|+|.||...+. +|+...|+|+ .||+|+|++.
T Consensus 146 ~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVIlATGG~~ 196 (582)
T PRK09231 146 YPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRAN-AVVMATGGAG 196 (582)
T ss_pred CCCcEEEeCeEEEEEEEe-CCEEEEEEEEEcCCCcEEEEECC-EEEECCCCCc
Confidence 358999999999999998 899999988653 5666789997 6999999865
No 59
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.31 E-value=3.7e-11 Score=138.96 Aligned_cols=57 Identities=21% Similarity=0.299 Sum_probs=44.9
Q ss_pred HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408 639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA 698 (720)
Q Consensus 639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~ 698 (720)
++..+. +..|++|++++.|++|+.+ +++|.||.+.+. +|+...|+|+ .||+|+|++.
T Consensus 143 L~~~~~-~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak-~VIlATGG~~ 200 (577)
T PRK06069 143 LYSRAL-RFDNIHFYDEHFVTSLIVE-NGVFKGVTAIDLKRGEFKVFQAK-AGIIATGGAG 200 (577)
T ss_pred HHHHHH-hcCCCEEEECCEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECC-cEEEcCchhc
Confidence 333344 3469999999999999988 789999988664 5655678997 5999999974
No 60
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.31 E-value=8.2e-11 Score=133.87 Aligned_cols=65 Identities=20% Similarity=0.198 Sum_probs=48.0
Q ss_pred HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHH-cCCC
Q psy14408 639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLL-SGIG 709 (720)
Q Consensus 639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~-SGIg 709 (720)
++..+. +.|++|+.+++|++|..+ ++ ..+|.+.+..|++.+|+|+ .||+|+|+ |+..++.+ .|+.
T Consensus 161 l~~~a~--~~Ga~i~~~~~V~~i~~~-~~-~~~v~~~~~~g~~~~i~a~-~VVnAaG~-wa~~l~~~~~g~~ 226 (502)
T PRK13369 161 NALDAA--ERGATILTRTRCVSARRE-GG-LWRVETRDADGETRTVRAR-ALVNAAGP-WVTDVIHRVAGSN 226 (502)
T ss_pred HHHHHH--HCCCEEecCcEEEEEEEc-CC-EEEEEEEeCCCCEEEEEec-EEEECCCc-cHHHHHhhccCCC
Confidence 344444 889999999999999886 44 4567776644666789997 59999996 67777663 3543
No 61
>KOG2820|consensus
Probab=99.31 E-value=1.3e-11 Score=131.77 Aligned_cols=65 Identities=25% Similarity=0.263 Sum_probs=47.3
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEc-cCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHH-cCCC
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIIN-DQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLL-SGIG 709 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e-~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~-SGIg 709 (720)
..|+.++ ++.|+.|+.+..|+.+.+. +.+..++|++.+ |. ++.|+| +|+++|+ |+..||.. .|++
T Consensus 157 k~~~~~~-~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~--gs--~Y~akk-iI~t~Ga-Wi~klL~~~~~~~ 223 (399)
T KOG2820|consen 157 KALQDKA-RELGVIFRDGEKVKFIKFVDEEGNHVSVQTTD--GS--IYHAKK-IIFTVGA-WINKLLPTSLAIG 223 (399)
T ss_pred HHHHHHH-HHcCeEEecCcceeeEeeccCCCceeEEEecc--CC--eeecce-EEEEecH-HHHhhcCcccccC
Confidence 4456665 5899999999999999876 235555555544 63 588975 9999998 67788776 3444
No 62
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.31 E-value=9.4e-11 Score=133.49 Aligned_cols=69 Identities=22% Similarity=0.177 Sum_probs=48.0
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHcCCCC
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIGP 710 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgp 710 (720)
+++..+. ++.|++|+++++|++|..++++.++ |++.++ .|++.+++|+ .||+|||+ |+..|+.++|+..
T Consensus 189 aL~~~l~-~~~Gv~i~~~~~V~~I~~~~d~~w~-v~v~~t~~g~~~~i~Ad-~VV~AAGa-wS~~La~~~Gi~~ 258 (497)
T PRK13339 189 KLAKHLE-SHPNAQVKYNHEVVDLERLSDGGWE-VTVKDRNTGEKREQVAD-YVFIGAGG-GAIPLLQKSGIPE 258 (497)
T ss_pred HHHHHHH-hCCCcEEEeCCEEEEEEECCCCCEE-EEEEecCCCceEEEEcC-EEEECCCc-chHHHHHHcCCCc
Confidence 4455554 3569999999999999875233332 333322 3433468998 59999997 7889999999875
No 63
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.31 E-value=4.9e-11 Score=137.13 Aligned_cols=56 Identities=23% Similarity=0.303 Sum_probs=43.4
Q ss_pred CCCeEEEcCeEEEEEEEccCCcEEEEEEEec-C-------------CcEEEEEcCcEEEEccCCcchHHHHH
Q psy14408 647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-K-------------GETVRVTANKEVILTAGAIANAQLLL 704 (720)
Q Consensus 647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~-------------G~e~tIkAkK~VVVAAGa~~Sp~LLl 704 (720)
+.|++|+++++|++|+.+ +|+|+||++.+. + ++.++|+|+ .||||||++....-|+
T Consensus 164 ~~gv~i~~~t~~~~Li~~-~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~Ak-aVILATGGf~~n~em~ 233 (549)
T PRK12834 164 RGLVRFRFRHRVDELVVT-DGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQ-AVIVTSGGIGGNHELV 233 (549)
T ss_pred hCCceEEecCEeeEEEEe-CCEEEEEEEEecccccccccccccccccceEEEecC-EEEEeCCCcccCHHHH
Confidence 346999999999999998 899999987421 1 234688996 6999999998655333
No 64
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.31 E-value=8.2e-11 Score=134.22 Aligned_cols=66 Identities=20% Similarity=0.188 Sum_probs=48.0
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHH-cCCC
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLL-SGIG 709 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~-SGIg 709 (720)
.++..+. +.|++|+.+++|++|..+ ++. .+|++.+. +|++.+|+|+ .||+|+|+ |+..++.. .|+.
T Consensus 160 ~l~~~A~--~~Ga~i~~~~~V~~i~~~-~~~-~~v~~~~~~~g~~~~i~a~-~VVnAaG~-wa~~l~~~~~g~~ 227 (508)
T PRK12266 160 LNARDAA--ERGAEILTRTRVVSARRE-NGL-WHVTLEDTATGKRYTVRAR-ALVNAAGP-WVKQFLDDGLGLP 227 (508)
T ss_pred HHHHHHH--HcCCEEEcCcEEEEEEEe-CCE-EEEEEEEcCCCCEEEEEcC-EEEECCCc-cHHHHHhhccCCC
Confidence 3444454 789999999999999876 544 56777653 4656789997 59999997 67777654 3553
No 65
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.31 E-value=4.7e-11 Score=137.64 Aligned_cols=50 Identities=18% Similarity=0.361 Sum_probs=41.4
Q ss_pred CCCeEEEcCeEEEEEEEcc-CCcEEEEEEEecCCcEEEEEcCcEEEEccCCcc
Q psy14408 647 RTNLYVLKRSKVTKVIIND-QNVATGVEYVNSKGETVRVTANKEVILTAGAIA 698 (720)
Q Consensus 647 ~aGVkIi~gt~VtkIl~e~-gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~ 698 (720)
+.|++|++++.|++|+.++ +|+|.||.+.+ +|+...|+|+ .||||||++.
T Consensus 147 ~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~-~g~~~~i~Ak-aVILATGG~~ 197 (553)
T PRK07395 147 RPNIEIISQALALSLWLEPETGRCQGISLLY-QGQITWLRAG-AVILATGGGG 197 (553)
T ss_pred cCCcEEEECcChhhheecCCCCEEEEEEEEE-CCeEEEEEcC-EEEEcCCCCc
Confidence 4599999999999999872 38999998875 5666678996 6999999963
No 66
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.30 E-value=1.3e-11 Score=140.11 Aligned_cols=40 Identities=25% Similarity=0.419 Sum_probs=37.0
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH 472 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s 472 (720)
..+||||||||++||+||.+||++ |++|+||||....++.
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~-G~~V~VlE~~~~~GG~ 41 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARA-GLKVTVLEKNDRVGGR 41 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhC-CCEEEEEEecCCCCcc
Confidence 468999999999999999999999 9999999999888664
No 67
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.30 E-value=7.3e-11 Score=136.64 Aligned_cols=63 Identities=19% Similarity=0.261 Sum_probs=50.2
Q ss_pred HHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHH
Q psy14408 640 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLL 705 (720)
Q Consensus 640 L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~ 705 (720)
|.+.+ ++.|++|++++.|++|+.+ +++|+||++.+ +|+.+.|+|++.||||+|++....-|++
T Consensus 227 L~~~~-~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~-~g~~~~i~A~~~VVlAtGg~~~n~em~~ 289 (578)
T PRK12843 227 LLYSL-RARGVRILTQTDVESLETD-HGRVIGATVVQ-GGVRRRIRARGGVVLATGGFNRHPQLRR 289 (578)
T ss_pred HHHHH-HhCCCEEEeCCEEEEEEee-CCEEEEEEEec-CCeEEEEEccceEEECCCCcccCHHHHH
Confidence 44444 4789999999999999987 89999998875 5666788876579999999988654443
No 68
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.30 E-value=3.3e-11 Score=140.22 Aligned_cols=51 Identities=25% Similarity=0.283 Sum_probs=42.6
Q ss_pred CCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408 647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA 698 (720)
Q Consensus 647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~ 698 (720)
+.|++|++++.|++|+.+++|+|+||.+.+. +|+...|+|+ .||||||++.
T Consensus 145 ~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g 196 (603)
T TIGR01811 145 AGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSAD-AVILATGGYG 196 (603)
T ss_pred cCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcC-EEEECCCCCc
Confidence 3589999999999999863579999998864 5666788997 6999999974
No 69
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.29 E-value=5.6e-11 Score=137.77 Aligned_cols=51 Identities=18% Similarity=0.337 Sum_probs=43.3
Q ss_pred CCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcch
Q psy14408 647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 699 (720)
Q Consensus 647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~S 699 (720)
..|+++++++.|++|+.+ +|+|.||...+. +|+...|+|+ .||+|+|++..
T Consensus 145 ~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 196 (580)
T TIGR01176 145 YPQIMRYDEWFVTDLLVD-DGRVCGLVAIEMAEGRLVTILAD-AVVLATGGAGR 196 (580)
T ss_pred cCCCEEEeCeEEEEEEee-CCEEEEEEEEEcCCCcEEEEecC-EEEEcCCCCcc
Confidence 458999999999999998 889999988654 5666789996 79999999763
No 70
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.29 E-value=1.6e-11 Score=134.08 Aligned_cols=89 Identities=24% Similarity=0.285 Sum_probs=56.4
Q ss_pred HHHHHHHHHHcCCCCCCCCCCccccccccccCCccccCcchhHHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEE
Q psy14408 593 REIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGV 672 (720)
Q Consensus 593 ~q~llea~rklG~~~~~d~ng~~~~~G~~~~~~g~~~G~k~~aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV 672 (720)
.+.+++.++++|+...+. ..|.+++ ...........|+.++. +.||+|+++++|.+|..+ + .+.
T Consensus 81 ~~d~i~~~e~~Gi~~~e~------~~Gr~Fp----~sdkA~~Iv~~ll~~~~--~~gV~i~~~~~v~~v~~~-~---~~f 144 (408)
T COG2081 81 PEDFIDWVEGLGIALKEE------DLGRMFP----DSDKASPIVDALLKELE--ALGVTIRTRSRVSSVEKD-D---SGF 144 (408)
T ss_pred HHHHHHHHHhcCCeeEEc------cCceecC----CccchHHHHHHHHHHHH--HcCcEEEecceEEeEEec-C---ceE
Confidence 345666677777765421 2333332 11122233445666655 899999999999999987 3 344
Q ss_pred EEEecCCcEEEEEcCcEEEEccCCcchH
Q psy14408 673 EYVNSKGETVRVTANKEVILTAGAIANA 700 (720)
Q Consensus 673 ~v~dt~G~e~tIkAkK~VVVAAGa~~Sp 700 (720)
.+...+|. +|+|++ +|||+|+...|
T Consensus 145 ~l~t~~g~--~i~~d~-lilAtGG~S~P 169 (408)
T COG2081 145 RLDTSSGE--TVKCDS-LILATGGKSWP 169 (408)
T ss_pred EEEcCCCC--EEEccE-EEEecCCcCCC
Confidence 44443454 799984 99999976665
No 71
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.29 E-value=5.6e-11 Score=144.04 Aligned_cols=49 Identities=29% Similarity=0.396 Sum_probs=42.1
Q ss_pred CCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408 648 TNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA 698 (720)
Q Consensus 648 aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~ 698 (720)
.++++.+++.+++|+.+ +|+|.||.+.+. +|+...|+|+ .||||||+++
T Consensus 156 ~~i~~~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g 205 (897)
T PRK13800 156 ERIRIENRLMPVRVLTE-GGRAVGAAALNTRTGEFVTVGAK-AVILATGPCG 205 (897)
T ss_pred CCcEEEeceeeEEEEee-CCEEEEEEEEecCCCcEEEEECC-EEEECCCccc
Confidence 47999999999999987 889999998764 5777789996 6999999975
No 72
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.29 E-value=1.1e-11 Score=138.10 Aligned_cols=59 Identities=20% Similarity=0.210 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchH
Q psy14408 635 AADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANA 700 (720)
Q Consensus 635 aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp 700 (720)
.....|...+ ++.||+|+.+++|++|+.+ ++++.+|++. ++ .++.|+ +||||+|+...|
T Consensus 110 ~Vv~~L~~~l-~~~gv~i~~~~~V~~i~~~-~~~~f~v~~~--~~--~~~~a~-~vILAtGG~S~p 168 (409)
T PF03486_consen 110 SVVDALLEEL-KRLGVEIHFNTRVKSIEKK-EDGVFGVKTK--NG--GEYEAD-AVILATGGKSYP 168 (409)
T ss_dssp HHHHHHHHHH-HHHT-EEE-S--EEEEEEE-TTEEEEEEET--TT--EEEEES-EEEE----SSSG
T ss_pred HHHHHHHHHH-HHcCCEEEeCCEeeeeeec-CCceeEeecc--Cc--ccccCC-EEEEecCCCCcc
Confidence 3334455544 4789999999999999998 7777778772 23 389998 599999986543
No 73
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.28 E-value=5.9e-11 Score=134.55 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=45.3
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcch
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 699 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~S 699 (720)
..|.+.+++..|++|++++.|++|+.+ +++|.||.+.+. ++...++|+ .||+|+|++..
T Consensus 132 ~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~~-~~~~~i~A~-~VVlAtGG~~~ 190 (488)
T TIGR00551 132 TTLVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWNR-ETVETCHAD-AVVLATGGAGK 190 (488)
T ss_pred HHHHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEEC-CcEEEEEcC-EEEECCCcccC
Confidence 334444412369999999999999987 788999988763 445678997 69999999753
No 74
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.27 E-value=2.3e-10 Score=132.60 Aligned_cols=61 Identities=16% Similarity=0.237 Sum_probs=48.0
Q ss_pred HHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHH
Q psy14408 640 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 703 (720)
Q Consensus 640 L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LL 703 (720)
|.+.+ ++.|++|+.+++|++|+.+ +++|+||++.+ +++..+|+|+|.||||+|++.....+
T Consensus 223 L~~~a-~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~-~~~~~~i~a~k~VVlAtGg~~~n~~~ 283 (581)
T PRK06134 223 LLKSA-EDLGVRIWESAPARELLRE-DGRVAGAVVET-PGGLQEIRARKGVVLAAGGFPHDPAR 283 (581)
T ss_pred HHHHH-HhCCCEEEcCCEEEEEEEe-CCEEEEEEEEE-CCcEEEEEeCCEEEEcCCCcccCHHH
Confidence 33444 4789999999999999988 88999999876 34556789944799999998765444
No 75
>KOG0260|consensus
Probab=99.27 E-value=7.1e-11 Score=139.28 Aligned_cols=17 Identities=47% Similarity=0.837 Sum_probs=8.9
Q ss_pred ecCCCCCCCCCCCCCCCCCC
Q psy14408 61 IPYSNTDDIYNPFSPINQYS 80 (720)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~ 80 (720)
.||+|.. .|+||...|+
T Consensus 1431 ~p~~~~~---~~~sp~~s~~ 1447 (1605)
T KOG0260|consen 1431 MPWSNMS---SPASPGSSYS 1447 (1605)
T ss_pred CcccccC---CCCCCCCCCC
Confidence 3887743 4455444443
No 76
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.27 E-value=9.4e-11 Score=135.89 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=46.3
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccC---CcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQ---NVATGVEYVNS-KGETVRVTANKEVILTAGAIA 698 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~g---GrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~ 698 (720)
..|.+.+ ++.|++|++++.|++|+.+++ |+|.||...+. +|+...|+|+ .||||+|++.
T Consensus 144 ~~L~~~~-~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~ 206 (583)
T PRK08205 144 QTLYQNC-VKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAK-AVVFATGGSG 206 (583)
T ss_pred HHHHHHH-HhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeC-eEEECCCCCc
Confidence 4455544 478999999999999998722 89999988653 4655678996 6999999976
No 77
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.27 E-value=8.9e-11 Score=134.78 Aligned_cols=52 Identities=25% Similarity=0.377 Sum_probs=42.8
Q ss_pred cCCCeEEEcCeEEEEEEEcc-----CCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408 646 KRTNLYVLKRSKVTKVIIND-----QNVATGVEYVNS-KGETVRVTANKEVILTAGAIA 698 (720)
Q Consensus 646 e~aGVkIi~gt~VtkIl~e~-----gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~ 698 (720)
++.|++|++++.|++++.++ +++|.||.+.+. +|+...|+|+ .||+|+|++.
T Consensus 150 ~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak-~VVlATGG~~ 207 (536)
T PRK09077 150 NHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAK-FVVLATGGAS 207 (536)
T ss_pred hCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecC-eEEECCCCCC
Confidence 34599999999999999762 289999998764 5666789996 6999999975
No 78
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.26 E-value=1e-10 Score=136.32 Aligned_cols=51 Identities=22% Similarity=0.266 Sum_probs=42.2
Q ss_pred CCCeEEEcCeEEEEEEEccC--CcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408 647 RTNLYVLKRSKVTKVIINDQ--NVATGVEYVNS-KGETVRVTANKEVILTAGAIA 698 (720)
Q Consensus 647 ~aGVkIi~gt~VtkIl~e~g--GrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~ 698 (720)
+.+++|++++.|++|+.+++ |+|.||.+.+. +|+...|+|+ .||+|||++.
T Consensus 138 ~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~ 191 (614)
T TIGR02061 138 NALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAK-TVIVAAGGAV 191 (614)
T ss_pred hCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECC-EEEECCCccc
Confidence 56789999999999998722 79999988654 5666789997 6999999975
No 79
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.25 E-value=6e-11 Score=135.51 Aligned_cols=49 Identities=22% Similarity=0.454 Sum_probs=41.2
Q ss_pred CCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcc
Q psy14408 647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIA 698 (720)
Q Consensus 647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~ 698 (720)
+.|++|++++.|++|+.+ +|+|+||.+.+ .++...++|+ .||||+|++.
T Consensus 149 ~~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~-~~~~~~i~Ak-~VVLATGG~~ 197 (513)
T PRK07512 149 TPSITVLEGAEARRLLVD-DGAVAGVLAAT-AGGPVVLPAR-AVVLATGGIG 197 (513)
T ss_pred CCCCEEEECcChhheeec-CCEEEEEEEEe-CCeEEEEECC-EEEEcCCCCc
Confidence 359999999999999987 78999999876 3444578997 6999999975
No 80
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.24 E-value=7.6e-11 Score=120.08 Aligned_cols=56 Identities=16% Similarity=0.233 Sum_probs=43.8
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCC-cEEEEEEEecC----C---cEEEEEcCcEEEEccCCc
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQN-VATGVEYVNSK----G---ETVRVTANKEVILTAGAI 697 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gG-rAtGV~v~dt~----G---~e~tIkAkK~VVVAAGa~ 697 (720)
.++.+++ ++|++|+..+.|++|+++ ++ +|.||.+.++. | .-..|+|+ .||-|||.-
T Consensus 114 kl~~~a~--~aGaki~n~~~veDvi~r-~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~-~VvDaTGHd 177 (262)
T COG1635 114 KLAARAL--DAGAKIFNGVSVEDVIVR-DDPRVAGVVVNWTPVQMAGLHVDPLTIRAK-AVVDATGHD 177 (262)
T ss_pred HHHHHHH--hcCceeeecceEEEEEEe-cCCceEEEEEecchhhhcccccCcceeeEE-EEEeCCCCc
Confidence 4555666 889999999999999998 55 89999999861 2 22578996 688888863
No 81
>PLN02661 Putative thiazole synthesis
Probab=99.23 E-value=1.4e-10 Score=126.47 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=44.2
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec----CC------cEEEEEcCcEEEEccCCcc
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS----KG------ETVRVTANKEVILTAGAIA 698 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt----~G------~e~tIkAkK~VVVAAGa~~ 698 (720)
.++..++ ++.|++|+.++.|++|+.+ +++|.||.+.+. ++ +...|+|+ .||+|||+.+
T Consensus 177 tLi~ka~-~~~gVkI~~~t~V~DLI~~-~grVaGVVvnw~~v~~~~~~~s~~dp~~I~Ak-aVVlATGh~g 244 (357)
T PLN02661 177 TIMSKLL-ARPNVKLFNAVAAEDLIVK-GDRVGGVVTNWALVAQNHDTQSCMDPNVMEAK-VVVSSCGHDG 244 (357)
T ss_pred HHHHHHH-hcCCCEEEeCeEeeeEEec-CCEEEEEEeecchhhhccCCCCccceeEEECC-EEEEcCCCCC
Confidence 3455555 5689999999999999998 899999987542 11 22478997 6999999654
No 82
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.22 E-value=4.5e-11 Score=140.32 Aligned_cols=35 Identities=34% Similarity=0.398 Sum_probs=32.6
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~ 468 (720)
++||||||||++|+++|++|+++ |++|+||||+..
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~-G~~V~VlE~~~~ 294 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARR-GWQVTLYEADEA 294 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence 47999999999999999999999 999999999843
No 83
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.22 E-value=1.4e-10 Score=118.35 Aligned_cols=56 Identities=18% Similarity=0.292 Sum_probs=41.6
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec----CC---cEEEEEcCcEEEEccCC
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS----KG---ETVRVTANKEVILTAGA 696 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt----~G---~e~tIkAkK~VVVAAGa 696 (720)
.++..++ ++|++|+..+.|+++++++++|+.||.+.++ .| .-..|+|+ .||=|||.
T Consensus 101 ~L~s~a~--~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak-~ViDaTGH 163 (230)
T PF01946_consen 101 TLASKAI--DAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAK-VVIDATGH 163 (230)
T ss_dssp HHHHHHH--TTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEES-EEEE---S
T ss_pred HHHHHHh--cCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEe-EEEeCCCC
Confidence 4566666 7999999999999999983389999999986 22 23689996 68888885
No 84
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.21 E-value=6.5e-11 Score=134.04 Aligned_cols=60 Identities=25% Similarity=0.336 Sum_probs=45.9
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHH
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL 704 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl 704 (720)
..|.+.+ ++.|++|+++++|++|+.+ ++++.||++.+ |+ ++.|+ .||+|+|.+.+-..|+
T Consensus 233 ~~L~~~~-~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~--g~--~~~ad-~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 233 ESLVKGL-EKHGGQIRYRARVTKIILE-NGKAVGVKLAD--GE--KIYAK-RIVSNATRWDTFGKLL 292 (493)
T ss_pred HHHHHHH-HHCCCEEEeCCeeeEEEec-CCcEEEEEeCC--CC--EEEcC-EEEECCChHHHHHHhC
Confidence 3344555 4889999999999999998 78899998765 54 68897 5999999865554343
No 85
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.21 E-value=3.9e-11 Score=135.76 Aligned_cols=64 Identities=22% Similarity=0.215 Sum_probs=47.0
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCC
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 708 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGI 708 (720)
..|.+.+ ++.|++|+.+++|++|+.+ +++++||++.+ |+ ++.|+ .||+|++...+...|+...+
T Consensus 223 ~al~~~~-~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~--g~--~~~ad-~VI~a~~~~~~~~~l~~~~~ 286 (502)
T TIGR02734 223 AAMAKLA-EDLGGELRLNAEVIRIETE-GGRATAVHLAD--GE--RLDAD-AVVSNADLHHTYRRLLPNHP 286 (502)
T ss_pred HHHHHHH-HHCCCEEEECCeEEEEEee-CCEEEEEEECC--CC--EEECC-EEEECCcHHHHHHHhcCccc
Confidence 3444444 4789999999999999988 78888888755 53 67897 59999987555555543333
No 86
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.18 E-value=3e-10 Score=119.17 Aligned_cols=57 Identities=18% Similarity=0.254 Sum_probs=42.6
Q ss_pred HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec----CC---cEEEEEcCcEEEEccCCcc
Q psy14408 639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS----KG---ETVRVTANKEVILTAGAIA 698 (720)
Q Consensus 639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt----~G---~e~tIkAkK~VVVAAGa~~ 698 (720)
++..+. +.|++|+.++.|++|+.++++++.||.+.++ .| ...+|+|+ .||+|+|...
T Consensus 110 L~~~A~--~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak-~VI~ATG~~a 173 (257)
T PRK04176 110 LAAAAI--DAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAK-AVVDATGHDA 173 (257)
T ss_pred HHHHHH--HcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcC-EEEEEeCCCc
Confidence 444444 7899999999999999863448999988652 11 34689997 6999999743
No 87
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.18 E-value=3.4e-10 Score=126.43 Aligned_cols=67 Identities=25% Similarity=0.365 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCCC
Q psy14408 634 SAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP 710 (720)
Q Consensus 634 ~aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgp 710 (720)
..+..+|.+.+ ++.|++|+++++|++|+.+ ++++.+|.. +|+ +++|+ .||+|+|. + ..+..+.|+..
T Consensus 108 ~~fD~~L~~~a-~~~Gv~i~~~~~V~~i~~~-~g~v~~v~~---~g~--~i~A~-~VI~A~G~-~-s~l~~~lgl~~ 174 (428)
T PRK10157 108 SKFDAWLMEQA-EEAGAQLITGIRVDNLVQR-DGKVVGVEA---DGD--VIEAK-TVILADGV-N-SILAEKLGMAK 174 (428)
T ss_pred HHHHHHHHHHH-HHCCCEEECCCEEEEEEEe-CCEEEEEEc---CCc--EEECC-EEEEEeCC-C-HHHHHHcCCCC
Confidence 34556777766 5789999999999999887 677666542 343 68997 59999986 3 46667777763
No 88
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.17 E-value=5.3e-10 Score=117.21 Aligned_cols=37 Identities=35% Similarity=0.361 Sum_probs=34.0
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408 431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468 (720)
Q Consensus 431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~ 468 (720)
..++||||||||++||+||+.||++ |++|+||||+..
T Consensus 19 ~~~~DVvIVGgGpAGL~aA~~la~~-G~~V~vlEk~~~ 55 (254)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKN-GLKVCVLERSLA 55 (254)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence 3578999999999999999999999 999999999843
No 89
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.13 E-value=1.1e-09 Score=126.01 Aligned_cols=62 Identities=23% Similarity=0.290 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEc-cC--CcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchH
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIIN-DQ--NVATGVEYVNS-KGETVRVTANKEVILTAGAIANA 700 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e-~g--GrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp 700 (720)
.-|.+.+ ++.||+|+++++|++|+.+ ++ ++|+||++.+. .++...+.+++.|||++|++...
T Consensus 230 ~PL~~~L-e~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~n 295 (576)
T PRK13977 230 LPLIKYL-EDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITES 295 (576)
T ss_pred HHHHHHH-HhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCccc
Confidence 3444555 6889999999999999985 23 78999999752 23334566667899999987553
No 90
>KOG2844|consensus
Probab=99.12 E-value=7.6e-10 Score=126.33 Aligned_cols=62 Identities=21% Similarity=0.295 Sum_probs=48.7
Q ss_pred HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408 639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 709 (720)
Q Consensus 639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg 709 (720)
.|..++ ++.|+.|++++.|++|..+ .++..||++.. | .|++.+ ||-||| +|...+-.++|++
T Consensus 192 ala~~A-~~~GA~viE~cpV~~i~~~-~~~~~gVeT~~--G---~iet~~-~VNaaG-vWAr~Vg~m~gvk 253 (856)
T KOG2844|consen 192 ALARAA-SALGALVIENCPVTGLHVE-TDKFGGVETPH--G---SIETEC-VVNAAG-VWAREVGAMAGVK 253 (856)
T ss_pred HHHHHH-HhcCcEEEecCCcceEEee-cCCccceeccC--c---ceecce-EEechh-HHHHHhhhhcCCc
Confidence 344444 5899999999999999998 66666888765 5 699974 999998 5777777778865
No 91
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.10 E-value=1.2e-09 Score=122.92 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=37.7
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408 431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH 472 (720)
Q Consensus 431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s 472 (720)
+++|||||||+|.+||++|..||++ |+||++|||++..++.
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~-GkkVLhlD~n~~yGG~ 42 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVN-GKKVLHMDRNPYYGGE 42 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhC-CCEEEEecCCCCcCcc
Confidence 4579999999999999999999999 9999999999887655
No 92
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.10 E-value=1.8e-09 Score=121.89 Aligned_cols=53 Identities=17% Similarity=0.292 Sum_probs=39.9
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcch
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 699 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~S 699 (720)
..|...+ ++.|++++.. .|++|+.+ ++++.||.. + |+ .++|+ .||||||++..
T Consensus 124 ~~L~~~~-~~~gv~i~~~-~v~~l~~~-~g~v~Gv~~-~--g~--~i~a~-~VVLATGG~~~ 176 (466)
T PRK08401 124 KILYKHA-RELGVNFIRG-FAEELAIK-NGKAYGVFL-D--GE--LLKFD-ATVIATGGFSG 176 (466)
T ss_pred HHHHHHH-HhcCCEEEEe-EeEEEEee-CCEEEEEEE-C--CE--EEEeC-eEEECCCcCcC
Confidence 3444444 4789999976 79999877 788999876 2 42 68887 59999999754
No 93
>PRK10015 oxidoreductase; Provisional
Probab=99.10 E-value=7.2e-10 Score=123.97 Aligned_cols=66 Identities=26% Similarity=0.286 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCCC
Q psy14408 635 AADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP 710 (720)
Q Consensus 635 aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgp 710 (720)
.+..||.+.+ ++.|++++.+++|++|+.+ ++++.+|+.. + .+++|+ .||+|.|. + ..+....|+.+
T Consensus 109 ~fd~~L~~~a-~~~Gv~i~~~~~V~~i~~~-~~~v~~v~~~---~--~~i~A~-~VI~AdG~-~-s~v~~~lg~~~ 174 (429)
T PRK10015 109 RLDPWLMEQA-EQAGAQFIPGVRVDALVRE-GNKVTGVQAG---D--DILEAN-VVILADGV-N-SMLGRSLGMVP 174 (429)
T ss_pred HHHHHHHHHH-HHcCCEEECCcEEEEEEEe-CCEEEEEEeC---C--eEEECC-EEEEccCc-c-hhhhcccCCCc
Confidence 4456676666 5789999999999999887 6777777532 2 379997 69999996 3 34556667654
No 94
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.09 E-value=7.9e-11 Score=131.54 Aligned_cols=63 Identities=25% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408 640 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 709 (720)
Q Consensus 640 L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg 709 (720)
|.+.+ ++.|++|+.++.|.+++.+ +++++||++.+..| ..+|+|+ .||-|+|- ..|+..+|+.
T Consensus 96 l~~~l-~e~gv~v~~~t~v~~v~~~-~~~i~~V~~~~~~g-~~~i~A~-~~IDaTG~---g~l~~~aG~~ 158 (428)
T PF12831_consen 96 LDEML-AEAGVEVLLGTRVVDVIRD-GGRITGVIVETKSG-RKEIRAK-VFIDATGD---GDLAALAGAP 158 (428)
T ss_dssp ----------------------------------------------------------------------
T ss_pred ccccc-ccccccccccccccccccc-cccccccccccccc-ccccccc-cccccccc---cccccccccc
Confidence 44444 4789999999999999999 89999999987555 6799997 68889983 4677777664
No 95
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.09 E-value=9.9e-10 Score=121.29 Aligned_cols=66 Identities=23% Similarity=0.182 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408 635 AADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 709 (720)
Q Consensus 635 aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg 709 (720)
....||+..+ ++.|++++.+++|+.++.+ ++.+.++.... + .+++|+ .||.|.|. ...+....|+.
T Consensus 96 ~fd~~La~~A-~~aGae~~~~~~~~~~~~~-~~~~~~~~~~~--~--~e~~a~-~vI~AdG~--~s~l~~~lg~~ 161 (396)
T COG0644 96 KFDKWLAERA-EEAGAELYPGTRVTGVIRE-DDGVVVGVRAG--D--DEVRAK-VVIDADGV--NSALARKLGLK 161 (396)
T ss_pred HhhHHHHHHH-HHcCCEEEeceEEEEEEEe-CCcEEEEEEcC--C--EEEEcC-EEEECCCc--chHHHHHhCCC
Confidence 3446787766 6899999999999999998 54433333322 2 689996 57777774 45667777777
No 96
>KOG0042|consensus
Probab=99.09 E-value=2e-11 Score=136.49 Aligned_cols=83 Identities=17% Similarity=0.192 Sum_probs=65.2
Q ss_pred cccccccCCccccCcchhHHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccC
Q psy14408 617 DVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAG 695 (720)
Q Consensus 617 ~~G~~~~~~g~~~G~k~~aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAG 695 (720)
.+|.+-...|.....|.....++ .|+ +.|+.+...++|.+++.+++|++.|++++|. +|++..|+|+ .||-|||
T Consensus 210 L~Ga~VYyDGQ~nDaRmnl~vAl--TA~--r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak-~VVNATG 284 (680)
T KOG0042|consen 210 LKGAMVYYDGQHNDARMNLAVAL--TAA--RNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAK-VVVNATG 284 (680)
T ss_pred ceeEEEEecCCCchHHHHHHHHH--HHH--hcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEE-EEEeCCC
Confidence 77888777777777765555322 244 7899999999999999986788999999986 7999999996 6888999
Q ss_pred CcchHHHHHH
Q psy14408 696 AIANAQLLLL 705 (720)
Q Consensus 696 a~~Sp~LLl~ 705 (720)
.+ +-.|.++
T Consensus 285 pf-sDsIr~M 293 (680)
T KOG0042|consen 285 PF-SDSIRKM 293 (680)
T ss_pred Cc-cHHHHhh
Confidence 86 4455544
No 97
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.09 E-value=1.4e-09 Score=122.98 Aligned_cols=63 Identities=27% Similarity=0.245 Sum_probs=45.5
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHH
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLL 703 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LL 703 (720)
..|.+.+ ++.|++|+++++|++|+.+ +++++||++.+. .|+..++.|+ .||+++.......||
T Consensus 236 ~aL~~~~-~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad-~VI~~~~~~~~~~ll 299 (492)
T TIGR02733 236 DRLVEAL-KRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKAD-DVVANLPPQSLLELL 299 (492)
T ss_pred HHHHHHH-HhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECC-EEEECCCHHHHHHhc
Confidence 3444444 4689999999999999998 788889988762 2223478897 599988875444433
No 98
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.07 E-value=1.1e-09 Score=126.45 Aligned_cols=52 Identities=23% Similarity=0.317 Sum_probs=42.2
Q ss_pred cCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408 646 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA 698 (720)
Q Consensus 646 e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~ 698 (720)
+..+++|+.+..|++|++++++.|.||...+. +|+...++|+ .||+|+|+.+
T Consensus 150 ~~~~~~~~~~~~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~ak-avilaTGG~g 202 (562)
T COG1053 150 KFSGIEIFDEYFVLDLLVDDGGGVAGVVARDLRTGELYVFRAK-AVILATGGAG 202 (562)
T ss_pred HhhcchhhhhhhhhhheecCCCcEEEEEEEEecCCcEEEEecC-cEEEccCCce
Confidence 34678999999999999883445899988876 5777778885 6999999977
No 99
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.05 E-value=2.7e-09 Score=118.99 Aligned_cols=61 Identities=20% Similarity=0.233 Sum_probs=45.4
Q ss_pred HHHHHHhcCCCeEEEcCeEEEEEEEcc-CCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHH
Q psy14408 639 YLTPIAGKRTNLYVLKRSKVTKVIIND-QNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL 704 (720)
Q Consensus 639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~-gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl 704 (720)
.|...+ ++.|++|+++++|++|+.++ +++++||+..+ +. .+|+|+ .||||+|++....-++
T Consensus 128 ~L~~~a-~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~--~~-~~i~ak-~VIlAtGG~~~n~~~~ 189 (432)
T TIGR02485 128 ALYSSA-ERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTV--GT-HRITTQ-ALVLAAGGLGANRDWL 189 (432)
T ss_pred HHHHHH-HHcCCEEEeCCEEEEEEecCCCCeEEEEEEcC--Cc-EEEEcC-EEEEcCCCcccCHHHH
Confidence 344444 47899999999999998762 57889988643 22 478896 6999999987655433
No 100
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.01 E-value=1.6e-09 Score=113.98 Aligned_cols=70 Identities=17% Similarity=0.149 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408 635 AADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 709 (720)
Q Consensus 635 aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg 709 (720)
....+|.+.+ ++.|++|+.+++|+.+..+ ++.++++.....+|+..+|+|+ +||+|-+.+|.. -...|+.
T Consensus 112 ~l~~~L~~~~-~~~gv~i~~~~~v~~~~~d-~~~~~~~~~~~~~g~~~~i~ad--lvVgADG~~S~v-R~~l~~~ 181 (356)
T PF01494_consen 112 ELDRALREEA-EERGVDIRFGTRVVSIEQD-DDGVTVVVRDGEDGEEETIEAD--LVVGADGAHSKV-RKQLGID 181 (356)
T ss_dssp HHHHHHHHHH-HHHTEEEEESEEEEEEEEE-TTEEEEEEEETCTCEEEEEEES--EEEE-SGTT-HH-HHHTTGG
T ss_pred HHHHhhhhhh-hhhhhhheeeeeccccccc-ccccccccccccCCceeEEEEe--eeecccCcccch-hhhcccc
Confidence 3445666665 4678999999999999987 6665555444436777789997 555555556643 3444444
No 101
>PRK06185 hypothetical protein; Provisional
Probab=99.01 E-value=7.8e-09 Score=113.43 Aligned_cols=68 Identities=22% Similarity=0.263 Sum_probs=47.7
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCCC
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP 710 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgp 710 (720)
.+|.+++++..|++++.+++|++++.+ ++++.||.+...+| +.+++|+ .||.|.|+ ++. +-...|+..
T Consensus 112 ~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g-~~~i~a~-~vI~AdG~-~S~-vr~~~gi~~ 179 (407)
T PRK06185 112 DFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDG-PGEIRAD-LVVGADGR-HSR-VRALAGLEV 179 (407)
T ss_pred HHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCC-cEEEEeC-EEEECCCC-chH-HHHHcCCCc
Confidence 344444313468999999999999988 77888888765334 3578997 58888886 453 556667754
No 102
>PRK07208 hypothetical protein; Provisional
Probab=99.00 E-value=6.6e-09 Score=116.80 Aligned_cols=40 Identities=25% Similarity=0.237 Sum_probs=36.1
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH 472 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s 472 (720)
...||||||||++||+||++|+++ |++|+|+||....++.
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~-g~~v~v~E~~~~~GG~ 42 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKR-GYPVTVLEADPVVGGI 42 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCce
Confidence 456999999999999999999999 9999999998877554
No 103
>KOG2853|consensus
Probab=99.00 E-value=8.9e-09 Score=110.44 Aligned_cols=69 Identities=20% Similarity=0.172 Sum_probs=48.2
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEc---------cCC-------cEEEEEEEecCCcEEEEEcCcEEEEccCCcchHH
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIIN---------DQN-------VATGVEYVNSKGETVRVTANKEVILTAGAIANAQ 701 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e---------~gG-------rAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~ 701 (720)
++-+++. ..|+.+..+ .|+..+++ ++| ++.||.++-.++-++.+++. -+|+|||+ |+-+
T Consensus 248 ~~rrk~~--~lGv~f~~G-eV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~a-l~V~aAGa-~s~Q 322 (509)
T KOG2853|consen 248 GIRRKAI--TLGVQFVKG-EVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFA-LCVNAAGA-WSGQ 322 (509)
T ss_pred HHHHHhh--hhcceEecc-eEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEE-EEEeccCc-cHHH
Confidence 4444444 679999866 57777665 233 45666665434556789986 58889997 8999
Q ss_pred HHHHcCCCCc
Q psy14408 702 LLLLSGIGPK 711 (720)
Q Consensus 702 LLl~SGIgpk 711 (720)
+....|||-.
T Consensus 323 vArlAgIG~g 332 (509)
T KOG2853|consen 323 VARLAGIGKG 332 (509)
T ss_pred HHHHhccCCC
Confidence 9999999843
No 104
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.99 E-value=2.2e-09 Score=114.72 Aligned_cols=69 Identities=20% Similarity=0.217 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec------CC--------cEEEEEcCcEEEEccCCcch
Q psy14408 634 SAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS------KG--------ETVRVTANKEVILTAGAIAN 699 (720)
Q Consensus 634 ~aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt------~G--------~e~tIkAkK~VVVAAGa~~S 699 (720)
..++..++++. ++.-++|...++|.+|+.. +++++||+..-. .| +.++++|. .|||+.|+++-
T Consensus 153 ~pFvr~~re~~-~~~~v~f~~RHrV~~l~~t-~grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~-aviv~SGGIGG 229 (552)
T COG3573 153 EPFVRRLREAQ-RRGRVTFRFRHRVDGLTTT-GGRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSAS-AVIVASGGIGG 229 (552)
T ss_pred hHHHHHHHHHH-hCCceEEEeeeeccceEee-CCeEeeecccccCCCccccCCCccceeecceEEeee-eEEEecCCcCC
Confidence 34555666666 3445999999999999998 999999976421 11 23678886 69999999887
Q ss_pred HHHHHH
Q psy14408 700 AQLLLL 705 (720)
Q Consensus 700 p~LLl~ 705 (720)
..-|.+
T Consensus 230 nhelVR 235 (552)
T COG3573 230 NHELVR 235 (552)
T ss_pred CHHHHH
Confidence 766643
No 105
>KOG1298|consensus
Probab=98.99 E-value=1.4e-09 Score=118.06 Aligned_cols=67 Identities=27% Similarity=0.346 Sum_probs=50.5
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCCC
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP 710 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgp 710 (720)
.-|++++....+|++.+++ |.+++.| +|.+.||++.+..|++.+..|. -.|||-|.+.. |.+|-..+
T Consensus 151 q~lR~ka~slpNV~~eeGt-V~sLlee-~gvvkGV~yk~k~gee~~~~Ap-LTvVCDGcfSn---lRrsL~~~ 217 (509)
T KOG1298|consen 151 QRLRKKAASLPNVRLEEGT-VKSLLEE-EGVVKGVTYKNKEGEEVEAFAP-LTVVCDGCFSN---LRRSLCDP 217 (509)
T ss_pred HHHHHHHhcCCCeEEeeee-HHHHHhc-cCeEEeEEEecCCCceEEEecc-eEEEecchhHH---HHHHhcCC
Confidence 3455544357799998774 8888877 8899999999988888899997 59999998644 45654443
No 106
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.97 E-value=4.4e-09 Score=117.71 Aligned_cols=58 Identities=29% Similarity=0.462 Sum_probs=44.9
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCC-cEEEEEEEecCCcEEEEEcCcEEEEccCCcc
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQN-VATGVEYVNSKGETVRVTANKEVILTAGAIA 698 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gG-rAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~ 698 (720)
.++..+. ++.+++|++++.+.+|+.+ ++ .+.||.+.+..+....+.|+ .||||+|+++
T Consensus 138 ~L~~~v~-~~p~I~v~e~~~a~~li~~-~~~~~~Gv~~~~~~~~~~~~~a~-~vVLATGG~g 196 (518)
T COG0029 138 ALLKKVR-NRPNITVLEGAEALDLIIE-DGIGVAGVLVLNRNGELGTFRAK-AVVLATGGLG 196 (518)
T ss_pred HHHHHHh-cCCCcEEEecchhhhhhhc-CCceEeEEEEecCCCeEEEEecC-eEEEecCCCc
Confidence 3444444 5679999999999999998 66 55699998743346789997 6999999864
No 107
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.95 E-value=2.3e-08 Score=111.74 Aligned_cols=71 Identities=24% Similarity=0.237 Sum_probs=54.4
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHcCCCCcc
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIGPKA 712 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgpk~ 712 (720)
.++..+. ++.|++++.+++|++|.+.++| .+-|.+.+. +|+.++|+|+ -|+|.||+ ++-.||+++||....
T Consensus 186 ~l~~~l~-~~~~~~~~~~~eV~~i~r~~dg-~W~v~~~~~~~~~~~~v~a~-FVfvGAGG-~aL~LLqksgi~e~~ 257 (488)
T PF06039_consen 186 QLVEYLQ-KQKGFELHLNHEVTDIKRNGDG-RWEVKVKDLKTGEKREVRAK-FVFVGAGG-GALPLLQKSGIPEGK 257 (488)
T ss_pred HHHHHHH-hCCCcEEEecCEeCeeEECCCC-CEEEEEEecCCCCeEEEECC-EEEECCch-HhHHHHHHcCChhhc
Confidence 4454444 4569999999999999998334 355666554 5777899997 69999998 688899999996543
No 108
>KOG4254|consensus
Probab=98.95 E-value=5.5e-09 Score=115.38 Aligned_cols=71 Identities=21% Similarity=0.294 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCCCcc
Q psy14408 635 AADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKA 712 (720)
Q Consensus 635 aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgpk~ 712 (720)
+....+...+ +++|++|.+...|++|+.| +|+|.||++.+ |. +++++ .||.+|+.+.|-.-|+.-+..|++
T Consensus 265 avs~aia~~~-~~~GaeI~tka~Vq~Illd-~gka~GV~L~d--G~--ev~sk-~VvSNAt~~~Tf~kLlp~e~LPee 335 (561)
T KOG4254|consen 265 AVSFAIAEGA-KRAGAEIFTKATVQSILLD-SGKAVGVRLAD--GT--EVRSK-IVVSNATPWDTFEKLLPGEALPEE 335 (561)
T ss_pred HHHHHHHHHH-Hhccceeeehhhhhheecc-CCeEEEEEecC--Cc--EEEee-eeecCCchHHHHHHhCCCccCCch
Confidence 3334455555 5899999999999999999 79999999998 75 57774 699999988888677766666655
No 109
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.91 E-value=2.3e-08 Score=109.94 Aligned_cols=40 Identities=33% Similarity=0.481 Sum_probs=35.3
Q ss_pred ccCCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408 428 VKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468 (720)
Q Consensus 428 I~~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~ 468 (720)
+....++||||||||++|+++|+.|+++ |++|+||||...
T Consensus 13 ~~~~~~~dV~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~ 52 (415)
T PRK07364 13 STRSLTYDVAIVGGGIVGLTLAAALKDS-GLRIALIEAQPA 52 (415)
T ss_pred CCCccccCEEEECcCHHHHHHHHHHhcC-CCEEEEEecCCc
Confidence 3344568999999999999999999999 999999999853
No 110
>PRK07233 hypothetical protein; Provisional
Probab=98.89 E-value=2.1e-08 Score=109.97 Aligned_cols=37 Identities=32% Similarity=0.331 Sum_probs=34.3
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH 472 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s 472 (720)
+|||||||++||+||+.|+++ |++|+||||....++.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-G~~v~vlE~~~~~GG~ 37 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-GHEVTVFEADDQLGGL 37 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEEeCCCCCCc
Confidence 599999999999999999999 9999999999887654
No 111
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.89 E-value=2.4e-08 Score=109.34 Aligned_cols=36 Identities=31% Similarity=0.415 Sum_probs=33.6
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
+..+||||||||++|+++|+.|+++ |++|+||||..
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~-G~~v~liE~~~ 39 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADA-GLSVALVEGRE 39 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC-CCEEEEEeCCC
Confidence 4568999999999999999999999 99999999984
No 112
>PRK06184 hypothetical protein; Provisional
Probab=98.88 E-value=4.5e-08 Score=111.26 Aligned_cols=36 Identities=33% Similarity=0.475 Sum_probs=33.4
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~ 468 (720)
.++||||||||++||++|+.|+++ |++|+||||...
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~-Gi~v~viE~~~~ 37 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARR-GVSFRLIEKAPE 37 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCC
Confidence 468999999999999999999999 999999999743
No 113
>PLN02985 squalene monooxygenase
Probab=98.87 E-value=3.6e-08 Score=113.03 Aligned_cols=38 Identities=34% Similarity=0.479 Sum_probs=35.0
Q ss_pred ccCCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 428 VKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 428 I~~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
..++..+||||||||++|+++|+.|+++ |++|+||||.
T Consensus 38 ~~~~~~~DViIVGAG~aGlalA~aLa~~-G~~V~vlEr~ 75 (514)
T PLN02985 38 ERKDGATDVIIVGAGVGGSALAYALAKD-GRRVHVIERD 75 (514)
T ss_pred cCcCCCceEEEECCCHHHHHHHHHHHHc-CCeEEEEECc
Confidence 4466788999999999999999999999 9999999997
No 114
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.85 E-value=3.5e-08 Score=107.84 Aligned_cols=33 Identities=30% Similarity=0.504 Sum_probs=31.3
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCC--CcEEEEccCC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSS--LKVLLIEAGG 467 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G--~KVLVLEKG~ 467 (720)
+||||||||++||++|+.|+++ | ++|+||||..
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~-g~g~~v~liE~~~ 36 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQA-APHLPVTVVDAAP 36 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcC-CCCCEEEEEeCCC
Confidence 7999999999999999999998 6 9999999984
No 115
>PRK08244 hypothetical protein; Provisional
Probab=98.84 E-value=5.6e-08 Score=110.13 Aligned_cols=35 Identities=29% Similarity=0.513 Sum_probs=32.7
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~ 468 (720)
++||||||||++||++|+.|+++ |++|+||||...
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALA-GVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence 47999999999999999999999 999999999843
No 116
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.84 E-value=5.9e-08 Score=110.91 Aligned_cols=122 Identities=23% Similarity=0.267 Sum_probs=76.9
Q ss_pred CcccccccccccchHHHHHHHHHHHHcCCCCCC----------CCCCccccccccccCCccccCcchhHHHHHHHHHHhc
Q psy14408 577 GYLPVGLFKNKENNIIREIFETSAQELGYPCPK----------DMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGK 646 (720)
Q Consensus 577 G~L~va~~~~~~~~~~~q~llea~rklG~~~~~----------d~ng~~~~~G~~~~~~g~~~G~k~~aa~a~L~~Aa~e 646 (720)
|.|.+...... ....+.+++.+++.|++... +..... ..|......+.... .....+++..|.
T Consensus 67 g~L~va~~~~~--~~~~~~~~~~~~~~gi~~~~l~~~e~~~~~P~l~~~-~~ga~~~~dg~vdp--~~l~~al~~~A~-- 139 (516)
T TIGR03377 67 GGLFITLPEDD--LEFQKQFLAACREAGIPAEEIDPAEALRLEPNLNPD-LIGAVKVPDGTVDP--FRLVAANVLDAQ-- 139 (516)
T ss_pred CceEEecCccc--HHHHHHHHHHHHHCCCCceEECHHHHHHHCCCCChh-heEEEEeCCcEECH--HHHHHHHHHHHH--
Confidence 33444433333 23445556666667765330 111112 34544444432221 222334555555
Q ss_pred CCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHcCC
Q psy14408 647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGI 708 (720)
Q Consensus 647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGI 708 (720)
+.|++|+++++|++|+.+ ++++.||++.++ +|++.+|+|+ .||+|||+ |+..|+...|+
T Consensus 140 ~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~~~~~g~~~~i~a~-~VVnAaG~-wa~~l~~~~g~ 199 (516)
T TIGR03377 140 EHGARIFTYTKVTGLIRE-GGRVTGVKVEDHKTGEEERIEAQ-VVINAAGI-WAGRIAEYAGL 199 (516)
T ss_pred HcCCEEEcCcEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcC-EEEECCCc-chHHHHHhcCC
Confidence 889999999999999988 888999998764 4656789997 59999996 78888888776
No 117
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.82 E-value=3.4e-08 Score=114.70 Aligned_cols=34 Identities=32% Similarity=0.595 Sum_probs=32.4
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
.+|||||||||.||+.||+.||+. |++|+|||++
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~-G~kV~LiE~~ 36 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARM-GAKTLLLTHN 36 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHc-CCcEEEEecc
Confidence 468999999999999999999999 9999999986
No 118
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.82 E-value=7.3e-08 Score=107.75 Aligned_cols=57 Identities=12% Similarity=0.173 Sum_probs=41.4
Q ss_pred HHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCC-cEEEEEcCcEEEEccCCcc
Q psy14408 640 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKG-ETVRVTANKEVILTAGAIA 698 (720)
Q Consensus 640 L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G-~e~tIkAkK~VVVAAGa~~ 698 (720)
|.+.+ ++.|++|+++++|++|+.+++++++||++.+..| +.+++.|+ .||+|+..-.
T Consensus 219 l~~~l-~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~-~VI~a~p~~~ 276 (453)
T TIGR02731 219 IVDYI-TSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTAD-AYVSAMPVDI 276 (453)
T ss_pred HHHHH-HhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECC-EEEEcCCHHH
Confidence 33444 4679999999999999875367789999876322 22368897 5999998633
No 119
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.82 E-value=5.9e-08 Score=105.58 Aligned_cols=36 Identities=31% Similarity=0.509 Sum_probs=33.4
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~ 468 (720)
+++||||||||++|+++|+.|++. |++|+||||+..
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~ 39 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQS-GLRVALLAPRAP 39 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCC
Confidence 467999999999999999999999 999999999854
No 120
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.81 E-value=5.6e-08 Score=100.47 Aligned_cols=34 Identities=41% Similarity=0.692 Sum_probs=32.1
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~ 468 (720)
|||||||||++|+++|+.|+++ |++|+||||+..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~-g~~v~vie~~~~ 34 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADK-GLRVLLLEKKSF 34 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCC
Confidence 6999999999999999999999 999999999853
No 121
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.80 E-value=2.3e-08 Score=110.78 Aligned_cols=56 Identities=23% Similarity=0.414 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCc
Q psy14408 635 AADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAI 697 (720)
Q Consensus 635 aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~ 697 (720)
....++++.+.+..+++|+ +..|++|+.+ +++|.||++.+ |. .+.|+ .||+|+|.+
T Consensus 96 ~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e-~~~v~GV~~~~--g~--~~~a~-~vVlaTGtf 151 (392)
T PF01134_consen 96 KYSRAMREKLESHPNLTII-QGEVTDLIVE-NGKVKGVVTKD--GE--EIEAD-AVVLATGTF 151 (392)
T ss_dssp HHHHHHHHHHHTSTTEEEE-ES-EEEEEEC-TTEEEEEEETT--SE--EEEEC-EEEE-TTTG
T ss_pred HHHHHHHHHHhcCCCeEEE-EcccceEEec-CCeEEEEEeCC--CC--EEecC-EEEEecccc
Confidence 3445666666245789997 5689999999 89999998865 63 78997 699999993
No 122
>PRK07045 putative monooxygenase; Reviewed
Probab=98.80 E-value=1.5e-07 Score=102.93 Aligned_cols=36 Identities=28% Similarity=0.419 Sum_probs=33.5
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~ 468 (720)
.++||+|||||++||++|+.|+++ |++|+|+||...
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~-G~~v~v~E~~~~ 39 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGAR-GHSVTVVERAAR 39 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhc-CCcEEEEeCCCc
Confidence 467999999999999999999999 999999999853
No 123
>PRK06126 hypothetical protein; Provisional
Probab=98.79 E-value=2.5e-07 Score=106.20 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=33.3
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
..++||||||||++||++|+.|+++ |++|+||||..
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~-G~~v~viEr~~ 40 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRR-GVDSILVERKD 40 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence 3467999999999999999999999 99999999874
No 124
>KOG2415|consensus
Probab=98.79 E-value=1.4e-08 Score=111.19 Aligned_cols=75 Identities=12% Similarity=0.216 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec----CC-------cEEEEEcCcEEEEccCCcc--h
Q psy14408 633 FSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS----KG-------ETVRVTANKEVILTAGAIA--N 699 (720)
Q Consensus 633 ~~aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt----~G-------~e~tIkAkK~VVVAAGa~~--S 699 (720)
.+..+.||.+.+ ++.|++|..+..+.+|+++++|.|.||.+.|. +| +...+.|+ ..|.|-|.-+ +
T Consensus 182 L~~~v~wLg~kA-Ee~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak-~TifAEGc~G~Ls 259 (621)
T KOG2415|consen 182 LGQLVRWLGEKA-EELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAK-VTIFAEGCHGSLS 259 (621)
T ss_pred HHHHHHHHHHHH-HhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecce-eEEEeccccchhH
Confidence 455678998888 78999999999999999987899999988864 22 23568886 5888877533 5
Q ss_pred HHHHHHcCCC
Q psy14408 700 AQLLLLSGIG 709 (720)
Q Consensus 700 p~LLl~SGIg 709 (720)
.+++.+-+++
T Consensus 260 kqi~kkf~Lr 269 (621)
T KOG2415|consen 260 KQIIKKFDLR 269 (621)
T ss_pred HHHHHHhCcc
Confidence 6677766555
No 125
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.76 E-value=1.1e-07 Score=104.42 Aligned_cols=32 Identities=22% Similarity=0.618 Sum_probs=31.1
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
|||||||||++|++||+.||+. |++|+||||.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~-G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARA-GIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCcEEEEECC
Confidence 6999999999999999999999 9999999997
No 126
>PRK09126 hypothetical protein; Provisional
Probab=98.76 E-value=1.5e-07 Score=102.81 Aligned_cols=37 Identities=41% Similarity=0.414 Sum_probs=34.0
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408 431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468 (720)
Q Consensus 431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~ 468 (720)
|+++||||||||++|+++|+.|+++ |++|+|+||...
T Consensus 1 ~~~~dviIvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~ 37 (392)
T PRK09126 1 MMHSDIVVVGAGPAGLSFARSLAGS-GLKVTLIERQPL 37 (392)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCCc
Confidence 3468999999999999999999999 999999999853
No 127
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.76 E-value=7.1e-08 Score=107.06 Aligned_cols=32 Identities=38% Similarity=0.499 Sum_probs=29.8
Q ss_pred EEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408 437 IIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 469 (720)
Q Consensus 437 VIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~ 469 (720)
||||||++|++||+.|+++ |++|+||||+...
T Consensus 1 vIIGgG~aGl~aAi~aa~~-G~~V~llEk~~~~ 32 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAARE-GLSVLLLEKNKKI 32 (400)
T ss_pred CEEEEeHHHHHHHHHHHhc-CCcEEEEecCccc
Confidence 6999999999999999999 9999999998644
No 128
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.76 E-value=8.6e-08 Score=103.58 Aligned_cols=34 Identities=44% Similarity=0.579 Sum_probs=31.9
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 469 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~ 469 (720)
||||||||++|+++|+.|+++ |++|+|+||....
T Consensus 1 dViIvGaG~aGl~~A~~L~~~-G~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARS-GLKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcC-CCEEEEEeCCCcc
Confidence 899999999999999999999 9999999998543
No 129
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.75 E-value=7.5e-08 Score=108.01 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=45.7
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHH
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQL 702 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~L 702 (720)
..|.+++ ++.|++|+.+++|+++..+ ++++.++... +|++..++|+ .||||+|.+.+..|
T Consensus 263 ~aL~~~l-~~~Gv~I~~g~~V~~v~~~-~~~V~~v~~~--~g~~~~i~AD-~VVLAtGrf~s~GL 322 (422)
T PRK05329 263 NALRRAF-ERLGGRIMPGDEVLGAEFE-GGRVTAVWTR--NHGDIPLRAR-HFVLATGSFFSGGL 322 (422)
T ss_pred HHHHHHH-HhCCCEEEeCCEEEEEEEe-CCEEEEEEee--CCceEEEECC-EEEEeCCCcccCce
Confidence 3455555 4789999999999999987 6777776633 3666789998 59999998866654
No 130
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.73 E-value=1.8e-07 Score=102.17 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=34.0
Q ss_pred CCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.+..+||||||||++|+++|+.|+++ |++|+||||..
T Consensus 4 ~~~~~dViIVGaG~~Gl~~A~~L~~~-G~~v~liE~~~ 40 (388)
T PRK07494 4 EKEHTDIAVIGGGPAGLAAAIALARA-GASVALVAPEP 40 (388)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHhcC-CCeEEEEeCCC
Confidence 45568999999999999999999999 99999999974
No 131
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.73 E-value=2.5e-07 Score=106.24 Aligned_cols=37 Identities=35% Similarity=0.505 Sum_probs=33.9
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408 431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468 (720)
Q Consensus 431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~ 468 (720)
+..+||||||||++||++|+.|+++ |++|+||||...
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~-G~~v~v~Er~~~ 44 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQY-GVRVLVLERWPT 44 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence 4568999999999999999999999 999999999843
No 132
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.73 E-value=1.8e-07 Score=103.00 Aligned_cols=34 Identities=41% Similarity=0.608 Sum_probs=32.2
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
++||||||||++|+++|+.|+++ |++|+||||..
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGS-GLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcC-CCEEEEEcCCC
Confidence 47999999999999999999999 99999999974
No 133
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.73 E-value=1.2e-07 Score=106.14 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=49.0
Q ss_pred HHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHc
Q psy14408 640 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLS 706 (720)
Q Consensus 640 L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~S 706 (720)
|..++ ++.|++|+.+++|+++..+ ++++++|.+.+ ++...++|++ ||||+|+|.+..|+...
T Consensus 269 L~~~~-~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~~--g~~~~l~AD~-vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 269 LKHRF-EQLGGVMLPGDRVLRAEFE-GNRVTRIHTRN--HRDIPLRADH-FVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHHHH-HHCCCEEEECcEEEEEEee-CCeEEEEEecC--CccceEECCE-EEEccCCCcCHHHHhhc
Confidence 44444 4889999999999999998 88888877644 4345799984 99999997688887664
No 134
>KOG2404|consensus
Probab=98.72 E-value=5.2e-08 Score=104.05 Aligned_cols=49 Identities=29% Similarity=0.559 Sum_probs=44.3
Q ss_pred CeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcch
Q psy14408 649 NLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 699 (720)
Q Consensus 649 GVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~S 699 (720)
-++|+.+++|++|+.+ +|+|.||++.|..|++..+.++ .||+|+|++.-
T Consensus 159 ~~ki~~nskvv~il~n-~gkVsgVeymd~sgek~~~~~~-~VVlatGGf~y 207 (477)
T KOG2404|consen 159 LVKILLNSKVVDILRN-NGKVSGVEYMDASGEKSKIIGD-AVVLATGGFGY 207 (477)
T ss_pred HHhhhhcceeeeeecC-CCeEEEEEEEcCCCCccceecC-ceEEecCCcCc
Confidence 4899999999999977 9999999999988887788887 59999999986
No 135
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.72 E-value=2.1e-07 Score=103.14 Aligned_cols=32 Identities=25% Similarity=0.516 Sum_probs=30.9
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
+||||||||++|++||+.||++ |++|+||||.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~-G~~V~llE~~ 32 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA-GIQTFLLERK 32 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-CCcEEEEecC
Confidence 5999999999999999999999 9999999997
No 136
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.71 E-value=2.2e-07 Score=105.05 Aligned_cols=36 Identities=28% Similarity=0.505 Sum_probs=33.5
Q ss_pred CCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
...++||||||||++|++||+.||++ |++|+||||.
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~-G~~VlllEr~ 71 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKG-GIETFLIERK 71 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhC-CCcEEEEecC
Confidence 34568999999999999999999999 9999999997
No 137
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.71 E-value=6.6e-07 Score=100.35 Aligned_cols=33 Identities=33% Similarity=0.670 Sum_probs=31.4
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
+|||||||||++|+.||++|++. |++|+||||+
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~-G~~v~lie~~ 33 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQL-GLKVALVEKE 33 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhC-CCeEEEEecC
Confidence 48999999999999999999999 9999999993
No 138
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.71 E-value=1.9e-07 Score=102.71 Aligned_cols=33 Identities=42% Similarity=0.591 Sum_probs=31.7
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
.+||||||||++||++|+.|+++ |++|+||||.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~-G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA-GLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-CCcEEEEccC
Confidence 46999999999999999999999 9999999997
No 139
>PRK06847 hypothetical protein; Provisional
Probab=98.70 E-value=3.1e-07 Score=99.53 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=31.9
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
..||||||||++||++|+.|++. |++|+|+||..
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~-g~~v~v~E~~~ 37 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRA-GIAVDLVEIDP 37 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhC-CCCEEEEecCC
Confidence 35999999999999999999999 99999999974
No 140
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.70 E-value=9.1e-08 Score=105.17 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=32.3
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.+||||||||++||++|+.|+++ |++|+||||..
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~-G~~v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA-GIDSVVLERRS 35 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc-CCCEEEEEcCC
Confidence 46999999999999999999999 99999999985
No 141
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.70 E-value=1.8e-07 Score=99.04 Aligned_cols=116 Identities=17% Similarity=0.147 Sum_probs=67.0
Q ss_pred CcCCcccccccccccchHHHHHHHHHHHHcCCCCCC----------CCCCccccccccccCCccccCcchhHHHHHHHHH
Q psy14408 574 GTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPK----------DMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPI 643 (720)
Q Consensus 574 ~~~G~L~va~~~~~~~~~~~q~llea~rklG~~~~~----------d~ng~~~~~G~~~~~~g~~~G~k~~aa~a~L~~A 643 (720)
...|.+.+...... ....+...+..++.|+.... +..... ..+..+...+..... ......+++.+
T Consensus 72 ~~~G~l~~a~~~~~--~~~l~~~~~~~~~~~~~~~~l~~~e~~~~~p~l~~~-~~~g~~~~~~g~v~p-~~l~~~l~~~~ 147 (337)
T TIGR02352 72 HQCGTLVVAFDEDD--VEHLRQLADLQSATGMEVEWLSGRALRRLEPYLSGG-IRGAVFYPDDAHVDP-RALLKALEKAL 147 (337)
T ss_pred EEccEEEEeCCHHH--HHHHHHHHHHHHhcCCceEEcCHHHHHHhCCCCCcc-cceEEEcCCCceECh-HHHHHHHHHHH
Confidence 34566666555444 44555666666666654330 011111 223332222111111 12222444444
Q ss_pred HhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHH
Q psy14408 644 AGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 703 (720)
Q Consensus 644 a~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LL 703 (720)
. +.|++|+++++|++|..+ ++++.+|.+.+ | +++|+ .||+|+|+ |+..|+
T Consensus 148 ~--~~g~~~~~~~~v~~i~~~-~~~~~~v~~~~--g---~~~a~-~vV~a~G~-~~~~l~ 197 (337)
T TIGR02352 148 E--KLGVEIIEHTEVQHIEIR-GEKVTAIVTPS--G---DVQAD-QVVLAAGA-WAGELL 197 (337)
T ss_pred H--HcCCEEEccceEEEEEee-CCEEEEEEcCC--C---EEECC-EEEEcCCh-hhhhcc
Confidence 4 789999999999999987 77788876533 4 68998 59999997 666654
No 142
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.69 E-value=3.2e-07 Score=104.13 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=41.8
Q ss_pred cCCCeEEEcCeEEEEEEEcc--CC--cEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHH
Q psy14408 646 KRTNLYVLKRSKVTKVIIND--QN--VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL 704 (720)
Q Consensus 646 e~aGVkIi~gt~VtkIl~e~--gG--rAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl 704 (720)
++.|++|+.+++|++|+.++ ++ +++||++.+..| ..++.|+ .||+|+.......||-
T Consensus 230 ~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~-~~~~~aD-~VVlA~p~~~~~~Ll~ 290 (474)
T TIGR02732 230 EARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEG-KKVIKAD-AYVAACDVPGIKRLLP 290 (474)
T ss_pred HHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCc-ceEEECC-EEEECCChHHHHhhCC
Confidence 36899999999999999862 12 378888754222 1358898 5999999876666653
No 143
>PRK06834 hypothetical protein; Provisional
Probab=98.68 E-value=3.4e-07 Score=104.33 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=32.9
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.++||||||||++|+++|+.|+++ |++|+||||..
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~-G~~v~vlEr~~ 36 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALA-GVDVAIVERRP 36 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence 458999999999999999999999 99999999974
No 144
>PRK07588 hypothetical protein; Provisional
Probab=98.68 E-value=2.1e-07 Score=101.91 Aligned_cols=32 Identities=34% Similarity=0.348 Sum_probs=30.8
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
||||||||++||++|+.|+++ |++|+|+||..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~-G~~v~v~E~~~ 33 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRY-GHEPTLIERAP 33 (391)
T ss_pred eEEEECccHHHHHHHHHHHHC-CCceEEEeCCC
Confidence 899999999999999999999 99999999984
No 145
>PRK08013 oxidoreductase; Provisional
Probab=98.68 E-value=1.3e-07 Score=104.27 Aligned_cols=36 Identities=25% Similarity=0.411 Sum_probs=33.4
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~ 468 (720)
.++||||||||++|+++|+.|+++ |++|+||||...
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~-G~~v~viE~~~~ 37 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGS-GLRVAVLEQRVP 37 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhC-CCEEEEEeCCCC
Confidence 458999999999999999999999 999999999853
No 146
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=7.1e-08 Score=103.91 Aligned_cols=64 Identities=25% Similarity=0.418 Sum_probs=50.4
Q ss_pred HHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCC
Q psy14408 640 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 708 (720)
Q Consensus 640 L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGI 708 (720)
+..+. +..++++++++.|++|.-+ + +.+|++++..|+...+..+ .|+++.|......++...|+
T Consensus 185 ~~~l~-~~~~i~~~~~~~i~ei~G~-~--v~~v~l~~~~~~~~~~~~~-gvf~~iG~~p~~~~~~~~~~ 248 (305)
T COG0492 185 VERLK-KNVKIEVLTNTVVKEILGD-D--VEGVVLKNVKGEEKELPVD-GVFIAIGHLPNTELLKGLGV 248 (305)
T ss_pred HHHHH-hcCCeEEEeCCceeEEecC-c--cceEEEEecCCceEEEEec-eEEEecCCCCchHHHhhccc
Confidence 33443 3348999999999999876 3 8899998855667788887 59999999888888887665
No 147
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.67 E-value=2.4e-07 Score=101.15 Aligned_cols=36 Identities=31% Similarity=0.424 Sum_probs=33.3
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
..++||||||||++|+++|+.|+++ |++|+|||+..
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~-G~~V~liE~~~ 38 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQH-GFSVAVLEHAA 38 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcC-CCEEEEEcCCC
Confidence 3468999999999999999999999 99999999974
No 148
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.67 E-value=2.6e-07 Score=101.05 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=31.5
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
+||||||||++|+++|+.|++. |++|+|+|+..
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~-G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQK-GIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcC-CCeEEEecCCC
Confidence 6999999999999999999999 99999999974
No 149
>PLN02612 phytoene desaturase
Probab=98.66 E-value=5.9e-07 Score=104.30 Aligned_cols=39 Identities=28% Similarity=0.320 Sum_probs=34.9
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH 472 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s 472 (720)
..||+|||||++||+||++|+++ |++|+|+|+....++.
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~-g~~~~~~e~~~~~gG~ 131 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADA-GHKPILLEARDVLGGK 131 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCCCCCc
Confidence 46999999999999999999999 9999999998766443
No 150
>PRK07538 hypothetical protein; Provisional
Probab=98.65 E-value=2.4e-07 Score=102.57 Aligned_cols=32 Identities=28% Similarity=0.488 Sum_probs=30.9
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
||||||||++||++|+.|+++ |++|+|+||..
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQR-GIEVVVFEAAP 33 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEEcCC
Confidence 899999999999999999999 99999999974
No 151
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.65 E-value=3.7e-07 Score=99.20 Aligned_cols=33 Identities=45% Similarity=0.640 Sum_probs=31.4
Q ss_pred cEEEECCcHHHHHHHHHHHhcCC-CcEEEEccCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGGD 468 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G-~KVLVLEKG~~ 468 (720)
||||||||++|+++|+.|+++ | ++|+|+||...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~-G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRL-GKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcC-CCceEEEEeCCCc
Confidence 899999999999999999999 9 99999999854
No 152
>PRK05868 hypothetical protein; Validated
Probab=98.64 E-value=4.6e-07 Score=99.39 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=31.3
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~ 468 (720)
||+|||||++||++|+.|+++ |++|+|+||...
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~-G~~v~viE~~~~ 35 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRH-GYSVTMVERHPG 35 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCC
Confidence 899999999999999999999 999999999843
No 153
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.63 E-value=4.3e-07 Score=99.28 Aligned_cols=34 Identities=29% Similarity=0.426 Sum_probs=32.2
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
..||||||||++||++|+.|+++ |++|+|+||..
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~-g~~v~v~Er~~ 37 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQ-GIKVKLLEQAA 37 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhC-CCcEEEEeeCc
Confidence 46999999999999999999999 99999999984
No 154
>PRK07190 hypothetical protein; Provisional
Probab=98.63 E-value=5.3e-07 Score=102.83 Aligned_cols=36 Identities=19% Similarity=0.365 Sum_probs=33.1
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~ 468 (720)
..+||||||||++||++|+.|+++ |++|+||||...
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~-Gi~V~llEr~~~ 39 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLC-GLNTVIVDKSDG 39 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHc-CCCEEEEeCCCc
Confidence 357999999999999999999999 999999999853
No 155
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.62 E-value=7.3e-08 Score=95.20 Aligned_cols=62 Identities=23% Similarity=0.318 Sum_probs=38.7
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcC
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSG 707 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SG 707 (720)
.+|...+ ++.|++++.+++|++|..+ +++ .-|++.+ | .+++|+ .||+|+|.+..+.++.--|
T Consensus 86 ~yl~~~~-~~~~l~i~~~~~V~~v~~~-~~~-w~v~~~~--~--~~~~a~-~VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 86 DYLQEYA-ERFGLEIRFNTRVESVRRD-GDG-WTVTTRD--G--RTIRAD-RVVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp HHHHHHH-HHTTGGEETS--EEEEEEE-TTT-EEEEETT--S---EEEEE-EEEE---SSCSB---S-TT
T ss_pred HHHHHHH-hhcCcccccCCEEEEEEEe-ccE-EEEEEEe--c--ceeeee-eEEEeeeccCCCCcccccc
Confidence 5677776 6778899999999999998 555 4455443 5 478897 5999999887887765444
No 156
>PLN02697 lycopene epsilon cyclase
Probab=98.61 E-value=3.3e-07 Score=105.56 Aligned_cols=35 Identities=29% Similarity=0.517 Sum_probs=32.6
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
+..+||||||||++|+++|..|+++ |++|+|||++
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~-Gl~V~LIe~~ 140 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKL-GLNVGLIGPD 140 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhC-CCcEEEecCc
Confidence 4568999999999999999999999 9999999985
No 157
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.61 E-value=1.6e-06 Score=97.56 Aligned_cols=35 Identities=34% Similarity=0.561 Sum_probs=33.0
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.+|||||||||.+|+.||..|+++ |++|+|+||+.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~-G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQL-GLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHC-CCcEEEEeccc
Confidence 368999999999999999999999 99999999975
No 158
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.61 E-value=1.2e-07 Score=99.59 Aligned_cols=35 Identities=37% Similarity=0.435 Sum_probs=32.4
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 470 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~ 470 (720)
+|+|||+|++|++||..|+++ |+.|+|+|||.-.+
T Consensus 3 siaIVGaGiAGl~aA~~L~~a-G~~vtV~eKg~GvG 37 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA-GREVTVFEKGRGVG 37 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc-CcEEEEEEcCCCcc
Confidence 799999999999999999999 99999999996443
No 159
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.61 E-value=6.9e-07 Score=97.36 Aligned_cols=36 Identities=47% Similarity=0.540 Sum_probs=32.1
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhc--CCCcEEEEccC
Q psy14408 431 GDCFDIIIVGASAAGCVLANRLSEV--SSLKVLLIEAG 466 (720)
Q Consensus 431 d~eyDVVIIGSGiAGLvAA~~LAea--~G~KVLVLEKG 466 (720)
|..+||||||||++|+++|+.|+++ .|++|+||||.
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 3568999999999999999999874 39999999996
No 160
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.59 E-value=5.9e-07 Score=99.11 Aligned_cols=34 Identities=32% Similarity=0.564 Sum_probs=32.1
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
..+||||||||++|+++|+.|+++ |++|+||||.
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~~-G~~v~viE~~ 36 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKES-DLRIAVIEGQ 36 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHhC-CCEEEEEcCC
Confidence 357999999999999999999999 9999999996
No 161
>KOG2852|consensus
Probab=98.59 E-value=3.4e-08 Score=104.26 Aligned_cols=65 Identities=17% Similarity=0.274 Sum_probs=45.9
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcC
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSG 707 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SG 707 (720)
.++..|. ++.||+++.+ .|.+|..+ .+|+.+|-.....+..+...+. +||||+|. |+..||...+
T Consensus 152 ~i~sea~-k~~~V~lv~G-kv~ev~dE-k~r~n~v~~ae~~~ti~~~d~~-~ivvsaGP-WTskllp~~r 216 (380)
T KOG2852|consen 152 FILSEAE-KRGGVKLVFG-KVKEVSDE-KHRINSVPKAEAEDTIIKADVH-KIVVSAGP-WTSKLLPFTR 216 (380)
T ss_pred HHHHHHH-hhcCeEEEEe-eeEEeecc-cccccccchhhhcCceEEeeee-EEEEecCC-Cchhhccccc
Confidence 4566676 6778999988 58888755 7788877665322323466776 59999998 7778876643
No 162
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.58 E-value=2.9e-07 Score=104.40 Aligned_cols=69 Identities=22% Similarity=0.226 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcCCCeE--EEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCC
Q psy14408 636 ADAYLTPIAGKRTNLY--VLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 708 (720)
Q Consensus 636 a~a~L~~Aa~e~aGVk--Ii~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGI 708 (720)
...||...+ ++.|+. |+++++|++|..+ +++ .-|++.+..+...+..++ .||||+|.+..|.+..--|+
T Consensus 113 v~~YL~~~a-~~fgl~~~I~~~t~V~~V~~~-~~~-w~V~~~~~~~~~~~~~~d-~VIvAtG~~~~P~~P~ipG~ 183 (461)
T PLN02172 113 VLAYLQDFA-REFKIEEMVRFETEVVRVEPV-DGK-WRVQSKNSGGFSKDEIFD-AVVVCNGHYTEPNVAHIPGI 183 (461)
T ss_pred HHHHHHHHH-HHcCCcceEEecCEEEEEeec-CCe-EEEEEEcCCCceEEEEcC-EEEEeccCCCCCcCCCCCCc
Confidence 446787777 677877 8999999999876 443 234443322333355677 59999998777766544444
No 163
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.58 E-value=6.8e-07 Score=98.62 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=32.2
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.+||||||||++|+++|+.|+++ |++|+||||..
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~ 35 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQS 35 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHC-CCCEEEEECCC
Confidence 46999999999999999999999 99999999985
No 164
>PRK07236 hypothetical protein; Provisional
Probab=98.58 E-value=8.8e-07 Score=97.13 Aligned_cols=36 Identities=19% Similarity=0.166 Sum_probs=33.3
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
+...||||||||++||++|+.|+++ |++|+|+||..
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~E~~~ 39 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRA-GWDVDVFERSP 39 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhC-CCCEEEEecCC
Confidence 4567999999999999999999999 99999999974
No 165
>KOG2665|consensus
Probab=98.57 E-value=2.7e-07 Score=98.53 Aligned_cols=40 Identities=33% Similarity=0.462 Sum_probs=35.1
Q ss_pred CCCcccEEEECCcHHHHHHHHHHHhc-CCCcEEEEccCCCC
Q psy14408 430 SGDCFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDT 469 (720)
Q Consensus 430 ~d~eyDVVIIGSGiAGLvAA~~LAea-~G~KVLVLEKG~~~ 469 (720)
....||.||||||+.||++|++|.-+ ++++|+||||...+
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~l 85 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSL 85 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhh
Confidence 45789999999999999999999854 69999999998654
No 166
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.57 E-value=6.5e-07 Score=98.16 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=32.5
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.++||||||||++|+++|+.|++. |++|+|+||..
T Consensus 2 ~~~dv~IvGgG~aGl~~A~~L~~~-G~~v~l~E~~~ 36 (384)
T PRK08849 2 NKYDIAVVGGGMVGAATALGFAKQ-GRSVAVIEGGE 36 (384)
T ss_pred CcccEEEECcCHHHHHHHHHHHhC-CCcEEEEcCCC
Confidence 357999999999999999999999 99999999873
No 167
>PRK06753 hypothetical protein; Provisional
Probab=98.57 E-value=1.2e-06 Score=95.05 Aligned_cols=33 Identities=30% Similarity=0.376 Sum_probs=31.4
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~ 468 (720)
||||||||++||++|+.|+++ |++|+|+||...
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~-g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQ-GHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCc
Confidence 899999999999999999999 999999999853
No 168
>PRK06370 mercuric reductase; Validated
Probab=98.55 E-value=2.7e-06 Score=95.86 Aligned_cols=36 Identities=42% Similarity=0.604 Sum_probs=33.4
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
+.+|||||||||.+|++||++|++. |++|+|+||+.
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~~ 38 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGL-GMKVALIERGL 38 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC-CCeEEEEecCc
Confidence 4568999999999999999999999 99999999974
No 169
>PRK11445 putative oxidoreductase; Provisional
Probab=98.55 E-value=1.9e-06 Score=93.69 Aligned_cols=32 Identities=34% Similarity=0.588 Sum_probs=30.1
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
+||||||||++|+++|+.|+++ ++|+||||..
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~--~~V~liE~~~ 33 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK--MKVIAIDKKH 33 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc--CCEEEEECCC
Confidence 6999999999999999999986 8999999985
No 170
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.54 E-value=1e-06 Score=102.46 Aligned_cols=32 Identities=34% Similarity=0.647 Sum_probs=31.0
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
|||||||||.+|+.+|..||+. |.+|+|||++
T Consensus 1 yDViVIGaG~AGl~aA~ala~~-G~~v~Lie~~ 32 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARM-GAKTLLLTLN 32 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCCEEEEecc
Confidence 6999999999999999999999 9999999987
No 171
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.54 E-value=3.7e-07 Score=103.21 Aligned_cols=34 Identities=29% Similarity=0.544 Sum_probs=32.0
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
.+|||||||||.+|++||.+||+. |++|+|||+.
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~-G~~V~liE~~ 35 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQL-GLKVACVEGR 35 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhC-CCeEEEEecC
Confidence 458999999999999999999999 9999999974
No 172
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.53 E-value=9.8e-07 Score=99.11 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=33.4
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
+..|||||||||++|+.||++|++. |++|+||||+.
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~-G~~v~liE~~~ 38 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKL-GKRVAVIERYR 38 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC-CCEEEEEeccc
Confidence 4568999999999999999999999 99999999974
No 173
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.52 E-value=2e-06 Score=98.99 Aligned_cols=36 Identities=25% Similarity=0.442 Sum_probs=33.5
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
..++||||||||++||++|+.|++. |++|+||||..
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viE~~~ 56 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQ-GVPVVLLDDDD 56 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCC
Confidence 3567999999999999999999999 99999999984
No 174
>PLN02576 protoporphyrinogen oxidase
Probab=98.51 E-value=5.9e-07 Score=101.56 Aligned_cols=41 Identities=27% Similarity=0.332 Sum_probs=35.8
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH 472 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s 472 (720)
.++||||||||++||+||++|+++.|++|+||||....++.
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr 51 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGN 51 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCc
Confidence 34699999999999999999998637999999999877655
No 175
>PTZ00367 squalene epoxidase; Provisional
Probab=98.50 E-value=1.4e-06 Score=101.27 Aligned_cols=35 Identities=49% Similarity=0.588 Sum_probs=32.8
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.++||||||||++|+++|+.|+++ |++|+||||..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~-G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQ-GRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhc-CCEEEEEcccc
Confidence 468999999999999999999999 99999999973
No 176
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.50 E-value=4.9e-07 Score=101.51 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=31.8
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
+|||||||||.+|++||++||+. |++|+|+||+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANH-GAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCcEEEEecC
Confidence 58999999999999999999999 9999999985
No 177
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.49 E-value=1.5e-06 Score=100.96 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=47.6
Q ss_pred HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcch
Q psy14408 639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 699 (720)
Q Consensus 639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~S 699 (720)
.|.+.+ ++.|++|++++.|++|+.+++|+|.||...+. +|+...|+|+ .||||||++..
T Consensus 131 ~L~~~~-~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 190 (570)
T PRK05675 131 TLYQGN-LKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSK-ATVLATGGAGR 190 (570)
T ss_pred HHHHHH-hccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecC-eEEECCCCccc
Confidence 344444 47899999999999999853689999998653 6777789996 79999999874
No 178
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.47 E-value=7.5e-07 Score=96.33 Aligned_cols=38 Identities=29% Similarity=0.260 Sum_probs=34.2
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCCc
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHS 473 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~ss 473 (720)
-+|.|||+|++||+||+.|+++ ++|+|+|++...++..
T Consensus 9 ~~IAVIGsGisGLSAA~~Ls~r--hdVTLfEA~~rlGGha 46 (447)
T COG2907 9 RKIAVIGSGISGLSAAWLLSRR--HDVTLFEADRRLGGHA 46 (447)
T ss_pred cceEEEcccchhhhhHHhhhcc--cceEEEeccccccCcc
Confidence 4899999999999999999998 8999999998886553
No 179
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.45 E-value=3.3e-06 Score=95.72 Aligned_cols=38 Identities=37% Similarity=0.602 Sum_probs=34.6
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408 431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 469 (720)
Q Consensus 431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~ 469 (720)
+.+|||||||+|.+|.+||.+||+. |.||+|+|++...
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~-G~kvalvE~~~~l 39 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQL-GLKVALVEKGERL 39 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC-CCCEEEEeecCCc
Confidence 4579999999999999999999999 9999999999533
No 180
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.45 E-value=1.2e-06 Score=99.31 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=40.1
Q ss_pred chhHHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCC
Q psy14408 632 RFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGA 696 (720)
Q Consensus 632 k~~aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa 696 (720)
....+..+|.+.+ ++.||++++++ |+++..+++|.+++|++.+ | .+|+|+ -||=|+|.
T Consensus 152 DR~~fd~~L~~~A-~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~--g--~~i~ad-~~IDASG~ 209 (454)
T PF04820_consen 152 DRAKFDQFLRRHA-EERGVEVIEGT-VVDVELDEDGRITAVRLDD--G--RTIEAD-FFIDASGR 209 (454)
T ss_dssp EHHHHHHHHHHHH-HHTT-EEEET--EEEEEE-TTSEEEEEEETT--S--EEEEES-EEEE-SGG
T ss_pred eHHHHHHHHHHHH-hcCCCEEEeCE-EEEEEEcCCCCEEEEEECC--C--CEEEEe-EEEECCCc
Confidence 3445566777766 57899999985 7787776578888888766 5 479997 57777774
No 181
>PLN02463 lycopene beta cyclase
Probab=98.44 E-value=2.2e-06 Score=97.01 Aligned_cols=36 Identities=31% Similarity=0.533 Sum_probs=33.0
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
...+||||||||++|+++|..|+++ |++|+|||+..
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~-Gl~V~liE~~~ 61 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEA-GLSVCCIDPSP 61 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHC-CCeEEEeccCc
Confidence 3458999999999999999999999 99999999863
No 182
>PLN02487 zeta-carotene desaturase
Probab=98.44 E-value=1.1e-06 Score=102.11 Aligned_cols=38 Identities=24% Similarity=0.168 Sum_probs=34.6
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI 471 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~ 471 (720)
..+|+|||||++||++|+.|+++ |++|+|+|+....++
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~-g~~v~i~E~~~~~gG 112 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRPFIGG 112 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-CCeeEEEecCCCCCC
Confidence 35999999999999999999999 999999999877654
No 183
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.44 E-value=2.5e-06 Score=104.98 Aligned_cols=61 Identities=18% Similarity=0.201 Sum_probs=48.7
Q ss_pred cCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408 646 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 709 (720)
Q Consensus 646 e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg 709 (720)
++.|++|++++.|++|.. ++++.+|++...+|...+|.|+ .||++.|......|+...|..
T Consensus 362 ~~~GV~i~~~~~v~~i~g--~~~v~~V~l~~~~g~~~~i~~D-~V~va~G~~Pnt~L~~~lg~~ 422 (985)
T TIGR01372 362 RELGIEVLTGHVVAATEG--GKRVSGVAVARNGGAGQRLEAD-ALAVSGGWTPVVHLFSQRGGK 422 (985)
T ss_pred HHcCCEEEcCCeEEEEec--CCcEEEEEEEecCCceEEEECC-EEEEcCCcCchhHHHHhcCCC
Confidence 478999999999999974 3567888887433555689998 599999988888888877765
No 184
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.44 E-value=2.6e-06 Score=95.44 Aligned_cols=33 Identities=45% Similarity=0.720 Sum_probs=31.1
Q ss_pred ccEEEECCcHHHHHHHHHHHh----cCCCcEEEEccCC
Q psy14408 434 FDIIIVGASAAGCVLANRLSE----VSSLKVLLIEAGG 467 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAe----a~G~KVLVLEKG~ 467 (720)
|||||||||++|+++|+.|++ + |++|+||||..
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~-G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTK-DLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccC-CCeEEEEeCCC
Confidence 699999999999999999999 7 99999999963
No 185
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.42 E-value=2.8e-06 Score=92.77 Aligned_cols=32 Identities=34% Similarity=0.547 Sum_probs=30.7
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
||||||||++|+++|+.|+++ |++|+|||++.
T Consensus 1 DviIiGaG~AGl~~A~~la~~-g~~v~liE~~~ 32 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARP-GLRVQLIEPHP 32 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCeEEEEccCC
Confidence 899999999999999999999 99999999974
No 186
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.42 E-value=3.7e-06 Score=92.79 Aligned_cols=32 Identities=31% Similarity=0.349 Sum_probs=30.7
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
+|+|||||++||++|+.|+++ |++|+|+||..
T Consensus 4 ~V~IvGgGiaGl~~A~~L~~~-G~~V~i~E~~~ 35 (400)
T PRK06475 4 SPLIAGAGVAGLSAALELAAR-GWAVTIIEKAQ 35 (400)
T ss_pred cEEEECCCHHHHHHHHHHHhC-CCcEEEEecCC
Confidence 899999999999999999999 99999999974
No 187
>PRK06996 hypothetical protein; Provisional
Probab=98.41 E-value=2.7e-06 Score=93.89 Aligned_cols=38 Identities=42% Similarity=0.543 Sum_probs=33.3
Q ss_pred cCCCcccEEEECCcHHHHHHHHHHHhcCC----CcEEEEccCC
Q psy14408 429 KSGDCFDIIIVGASAAGCVLANRLSEVSS----LKVLLIEAGG 467 (720)
Q Consensus 429 ~~d~eyDVVIIGSGiAGLvAA~~LAea~G----~KVLVLEKG~ 467 (720)
+..+++||||||||++|+++|+.|+++ | ++|+|||+..
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~-g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARR-SATRALSIALIDARE 48 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcC-CCcCCceEEEecCCC
Confidence 345678999999999999999999998 6 5799999974
No 188
>PLN02676 polyamine oxidase
Probab=98.41 E-value=4.7e-06 Score=95.14 Aligned_cols=40 Identities=33% Similarity=0.431 Sum_probs=35.8
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCCCCCCC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGDTPIH 472 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~~~~~s 472 (720)
..+||||||||++||+||++|+++ |+ +|+||||....++.
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~-g~~~v~vlE~~~~~GG~ 65 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEA-GIEDILILEATDRIGGR 65 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHc-CCCcEEEecCCCCCCCc
Confidence 356999999999999999999999 98 59999999877654
No 189
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.41 E-value=1.3e-06 Score=98.94 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=32.6
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.+|||||||||.+|+.||.+||+. |++|+||||..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~~ 37 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADL-GLETVCVERYS 37 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence 358999999999999999999999 99999999863
No 190
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.40 E-value=3e-06 Score=97.18 Aligned_cols=58 Identities=21% Similarity=0.398 Sum_probs=45.8
Q ss_pred CCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHc
Q psy14408 647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLS 706 (720)
Q Consensus 647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~S 706 (720)
+.|++|+.++.|++|..+ ++++.+|++.+. +|+..++.++ .||+|+|......+|...
T Consensus 400 ~~gV~i~~~~~v~~i~~~-~~~v~~v~~~~~~~~~~~~i~~D-~vi~a~G~~Pn~~~l~~~ 458 (515)
T TIGR03140 400 LPNVDILTSAQTTEIVGD-GDKVTGIRYQDRNSGEEKQLDLD-GVFVQIGLVPNTEWLKDA 458 (515)
T ss_pred CCCCEEEECCeeEEEEcC-CCEEEEEEEEECCCCcEEEEEcC-EEEEEeCCcCCchHHhhh
Confidence 369999999999999866 678888988763 3555689998 599999987777766543
No 191
>PLN02507 glutathione reductase
Probab=98.36 E-value=3.7e-06 Score=96.20 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=32.6
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
..+|||||||||.+|+.||.+|++. |+||+|||+.
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~-G~~V~liE~~ 57 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANF-GAKVGICELP 57 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc
Confidence 4578999999999999999999999 9999999973
No 192
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.36 E-value=1.1e-06 Score=94.43 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=49.2
Q ss_pred HHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHH
Q psy14408 640 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 703 (720)
Q Consensus 640 L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LL 703 (720)
|.... ++.|+.++.+-+|.+..+. +++|++|.+++ +....++|+ .+|+|+|++-+..|.
T Consensus 264 L~~~f-~~~Gg~~m~Gd~V~~a~~~-~~~v~~i~trn--~~diP~~a~-~~VLAsGsffskGLv 322 (421)
T COG3075 264 LQRQF-EQLGGLWMPGDEVKKATCK-GGRVTEIYTRN--HADIPLRAD-FYVLASGSFFSKGLV 322 (421)
T ss_pred HHHHH-HHcCceEecCCceeeeeee-CCeEEEEEecc--cccCCCChh-Heeeeccccccccch
Confidence 44445 5889999999999999998 99999998886 555789998 599999998887654
No 193
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.35 E-value=3.9e-06 Score=94.67 Aligned_cols=62 Identities=11% Similarity=0.174 Sum_probs=45.9
Q ss_pred CCCeEEEcCeEEEEEEEccCCcEEEEEEEec-------C---------CcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408 647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-------K---------GETVRVTANKEVILTAGAIANAQLLLLSGIG 709 (720)
Q Consensus 647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-------~---------G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg 709 (720)
+.|++|++++.+++|+.+++|++++|++... + |.+.+|.++ .||+|.|-.....+|...|+.
T Consensus 321 ~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D-~Vi~AiG~~p~~~~l~~~gl~ 398 (449)
T TIGR01316 321 EEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEAD-AVIVAIGNGSNPIMAETTRLK 398 (449)
T ss_pred hCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECC-EEEECCCCCCCchhhhccCcc
Confidence 7899999999999998653578888887521 1 334579998 599999976555555556664
No 194
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.34 E-value=2.3e-06 Score=96.99 Aligned_cols=34 Identities=41% Similarity=0.615 Sum_probs=32.0
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
.+|||||||||.+|++||++|++. |++|+|||++
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~-g~~v~lie~~ 36 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQL-GLKVACIEAW 36 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhC-CCeEEEEecc
Confidence 368999999999999999999999 9999999983
No 195
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.34 E-value=3.4e-06 Score=95.33 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=34.7
Q ss_pred CCCcccEEEECCcHHHHHHHHHHHhcCCCc-EEEEccCCCC
Q psy14408 430 SGDCFDIIIVGASAAGCVLANRLSEVSSLK-VLLIEAGGDT 469 (720)
Q Consensus 430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~K-VLVLEKG~~~ 469 (720)
....+||||||||.+|+++|++|.++ |.. ++||||+...
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~-g~~~~~i~Ek~~~~ 44 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQA-GVPDFVIFEKRDDV 44 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHc-CCCcEEEEEccCCc
Confidence 34567999999999999999999999 998 9999998543
No 196
>PRK12831 putative oxidoreductase; Provisional
Probab=98.34 E-value=3.6e-06 Score=95.48 Aligned_cols=62 Identities=11% Similarity=0.249 Sum_probs=45.4
Q ss_pred CCCeEEEcCeEEEEEEEccCCcEEEEEEEec----------------CCcEEEEEcCcEEEEccCCcchHHHHHH-cCCC
Q psy14408 647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS----------------KGETVRVTANKEVILTAGAIANAQLLLL-SGIG 709 (720)
Q Consensus 647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt----------------~G~e~tIkAkK~VVVAAGa~~Sp~LLl~-SGIg 709 (720)
+.|++|++++.+++|+.+++|+++||++... +|.+.+|.++ .||+|.|-.....++.. .|+.
T Consensus 330 ~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D-~Vi~AiG~~p~~~~~~~~~gl~ 408 (464)
T PRK12831 330 EEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVD-TVIMSLGTSPNPLISSTTKGLK 408 (464)
T ss_pred HcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECC-EEEECCCCCCChhhhcccCCce
Confidence 6799999999999998753678999887521 2445679998 59999997655555543 4553
No 197
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.33 E-value=2.9e-06 Score=97.26 Aligned_cols=58 Identities=21% Similarity=0.353 Sum_probs=47.1
Q ss_pred CCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHc
Q psy14408 647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLS 706 (720)
Q Consensus 647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~S 706 (720)
..|++|+.++.|++|..+ ++++.+|++.+. +|++.++.++ .|++|.|......+|...
T Consensus 399 ~~gI~i~~~~~v~~i~~~-~g~v~~v~~~~~~~g~~~~i~~D-~v~~~~G~~p~~~~l~~~ 457 (517)
T PRK15317 399 LPNVTIITNAQTTEVTGD-GDKVTGLTYKDRTTGEEHHLELE-GVFVQIGLVPNTEWLKGT 457 (517)
T ss_pred CCCcEEEECcEEEEEEcC-CCcEEEEEEEECCCCcEEEEEcC-EEEEeECCccCchHHhhh
Confidence 469999999999999876 688889988764 4666789998 599999987767776543
No 198
>PRK10262 thioredoxin reductase; Provisional
Probab=98.32 E-value=5.2e-06 Score=88.86 Aligned_cols=66 Identities=14% Similarity=0.194 Sum_probs=46.9
Q ss_pred HHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec--CCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408 640 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS--KGETVRVTANKEVILTAGAIANAQLLLLSGIG 709 (720)
Q Consensus 640 L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt--~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg 709 (720)
+.+.+ ++.|+++++++.|++|..+ ++++.+|++.+. .+.+.++.++ .||+|+|......++ +.+++
T Consensus 191 ~~~~l-~~~gV~i~~~~~v~~v~~~-~~~~~~v~~~~~~~~~~~~~i~~D-~vv~a~G~~p~~~l~-~~~l~ 258 (321)
T PRK10262 191 LMDKV-ENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESLDVA-GLFVAIGHSPNTAIF-EGQLE 258 (321)
T ss_pred HHhhc-cCCCeEEEeCCEEEEEEcC-CccEEEEEEEEcCCCCeEEEEECC-EEEEEeCCccChhHh-hcccc
Confidence 44444 4789999999999999765 556778887753 2344579998 599999976665544 44554
No 199
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.31 E-value=1.3e-05 Score=94.33 Aligned_cols=36 Identities=33% Similarity=0.491 Sum_probs=33.0
Q ss_pred CCcccEEEECCcHHHHHHHHHHHh-cCCCcEEEEccCC
Q psy14408 431 GDCFDIIIVGASAAGCVLANRLSE-VSSLKVLLIEAGG 467 (720)
Q Consensus 431 d~eyDVVIIGSGiAGLvAA~~LAe-a~G~KVLVLEKG~ 467 (720)
..++||||||||++||++|+.||+ . |++|+||||..
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~-Gi~v~IiE~~~ 66 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFP-DITTRIVERKP 66 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCC-CCcEEEEEcCC
Confidence 346899999999999999999999 7 99999999874
No 200
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.30 E-value=4.2e-06 Score=98.68 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=34.2
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI 471 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~ 471 (720)
..+|+|||||.+||+||..|++. |++|+|+|+....++
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~-G~~V~V~E~~~~~GG 364 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARN-GVAVTVYDRHPEIGG 364 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCCc
Confidence 45999999999999999999999 999999999866543
No 201
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.29 E-value=7.9e-06 Score=92.26 Aligned_cols=37 Identities=32% Similarity=0.383 Sum_probs=33.4
Q ss_pred cEEEECCcHHHHHHHHHHHhcCC--CcEEEEccCCCCCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSS--LKVLLIEAGGDTPIH 472 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G--~KVLVLEKG~~~~~s 472 (720)
-|+|||||++||+||++|+++ | .+|+|+||+...++-
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~-~p~~~i~lfE~~~r~GG~ 40 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKA-GPDVEVTLFEADDRVGGL 40 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHh-CCCCcEEEEecCCCCCce
Confidence 489999999999999999999 8 999999998776544
No 202
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.28 E-value=4.6e-06 Score=94.59 Aligned_cols=61 Identities=21% Similarity=0.224 Sum_probs=46.0
Q ss_pred CCCeEEEcCeEEEEEEEccCCcEEEEEEEec----------CCcEEEEEcCcEEEEccCCcch-HHHHHHcCCC
Q psy14408 647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS----------KGETVRVTANKEVILTAGAIAN-AQLLLLSGIG 709 (720)
Q Consensus 647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt----------~G~e~tIkAkK~VVVAAGa~~S-p~LLl~SGIg 709 (720)
+.|+++++++.+++|..+ +|+++||++... .|.+.+|.++ .||+|+|.... ..++...|+.
T Consensus 341 ~~GV~i~~~~~~~~i~~~-~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D-~VI~A~G~~p~~~~l~~~~gl~ 412 (471)
T PRK12810 341 EEGVEREFNVQTKEFEGE-NGKVTGVKVVRTELGEGDFEPVEGSEFVLPAD-LVLLAMGFTGPEAGLLAQFGVE 412 (471)
T ss_pred HcCCeEEeccCceEEEcc-CCEEEEEEEEEEEecCCCccccCCceEEEECC-EEEECcCcCCCchhhccccCcc
Confidence 679999999999999866 788999886521 2455789998 59999995443 3466666653
No 203
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.28 E-value=7.5e-07 Score=75.36 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=29.5
Q ss_pred EECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCC
Q psy14408 438 IVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI 471 (720)
Q Consensus 438 IIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~ 471 (720)
|||||++||++|++|+++ |++|+|+||....++
T Consensus 1 IiGaG~sGl~aA~~L~~~-g~~v~v~E~~~~~GG 33 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-GYRVTVFEKNDRLGG 33 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-TSEEEEEESSSSSSG
T ss_pred CEeeCHHHHHHHHHHHHC-CCcEEEEecCcccCc
Confidence 899999999999999999 999999999976643
No 204
>PLN02529 lysine-specific histone demethylase 1
Probab=98.26 E-value=1.4e-05 Score=95.36 Aligned_cols=41 Identities=32% Similarity=0.388 Sum_probs=36.5
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408 431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH 472 (720)
Q Consensus 431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s 472 (720)
....||||||||++||+||..|+++ |++|+|||+....++.
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~-g~~v~v~E~~~~~GG~ 198 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSF-GFKVVVLEGRNRPGGR 198 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHc-CCcEEEEecCccCcCc
Confidence 3457999999999999999999999 9999999998776554
No 205
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.24 E-value=2.9e-06 Score=96.42 Aligned_cols=56 Identities=23% Similarity=0.376 Sum_probs=40.8
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcch
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 699 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~S 699 (720)
.+++..+....|+.++.+ .|++|+++++.+|+||.+.+ |. .+.|+ .|||++|+|-.
T Consensus 104 ~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~--G~--~~~a~-aVVlTTGTFL~ 159 (621)
T COG0445 104 RAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTAD--GP--EFHAK-AVVLTTGTFLR 159 (621)
T ss_pred HHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCC--CC--eeecC-EEEEeeccccc
Confidence 455555524568999865 68888887234699999877 74 78997 69999998744
No 206
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.24 E-value=2.6e-05 Score=87.21 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=42.9
Q ss_pred HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcch
Q psy14408 639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 699 (720)
Q Consensus 639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~S 699 (720)
-+++.+ +..|++|+++++|++|+++ ++.+.+|++.+ |+ +|.++ .||+|-|--+.
T Consensus 178 ni~~~l-~~~G~ei~f~t~VeDi~~~-~~~~~~v~~~~--g~--~i~~~-~vvlA~Grsg~ 231 (486)
T COG2509 178 NIREYL-ESLGGEIRFNTEVEDIEIE-DNEVLGVKLTK--GE--EIEAD-YVVLAPGRSGR 231 (486)
T ss_pred HHHHHH-HhcCcEEEeeeEEEEEEec-CCceEEEEccC--Cc--EEecC-EEEEccCcchH
Confidence 344444 5889999999999999998 77788888876 64 78998 59999996443
No 207
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.24 E-value=5.8e-06 Score=90.56 Aligned_cols=57 Identities=23% Similarity=0.176 Sum_probs=39.4
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHH
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL 704 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl 704 (720)
..|.+++ ++ |++|+++++|++|..+ +++ .+|++. +|. .++|+ +||+|+|+ |+..++.
T Consensus 139 ~~l~~~~-~~-G~~i~~~~~V~~i~~~-~~~-~~v~t~--~g~--~~~a~-~vV~a~G~-~~~~l~~ 195 (381)
T TIGR03197 139 RALLAHA-GI-RLTLHFNTEITSLERD-GEG-WQLLDA--NGE--VIAAS-VVVLANGA-QAGQLAQ 195 (381)
T ss_pred HHHHhcc-CC-CcEEEeCCEEEEEEEc-CCe-EEEEeC--CCC--EEEcC-EEEEcCCc-ccccccc
Confidence 3444555 46 9999999999999887 554 344433 353 48897 59999997 5656554
No 208
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.20 E-value=5.9e-06 Score=93.19 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=33.7
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 470 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~ 470 (720)
..+|+|||||++|+++|..|++. |++|+|+|+....+
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~-g~~V~lie~~~~~g 176 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARK-GYDVTIFEARDKAG 176 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCCCC
Confidence 45999999999999999999999 99999999986653
No 209
>KOG1335|consensus
Probab=98.18 E-value=1.1e-05 Score=88.30 Aligned_cols=54 Identities=15% Similarity=0.284 Sum_probs=41.4
Q ss_pred HHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCC
Q psy14408 640 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGA 696 (720)
Q Consensus 640 L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa 696 (720)
+.+.+ ++.|++|+++++|+.+..+++| ..-|++++. +|++.+++|+ .+.||.|-
T Consensus 258 ~qr~L-~kQgikF~l~tkv~~a~~~~dg-~v~i~ve~ak~~k~~tle~D-vlLVsiGR 312 (506)
T KOG1335|consen 258 FQRVL-QKQGIKFKLGTKVTSATRNGDG-PVEIEVENAKTGKKETLECD-VLLVSIGR 312 (506)
T ss_pred HHHHH-HhcCceeEeccEEEEeeccCCC-ceEEEEEecCCCceeEEEee-EEEEEccC
Confidence 44444 4789999999999999988444 345666665 5777899998 68999994
No 210
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.17 E-value=1.1e-05 Score=99.59 Aligned_cols=38 Identities=24% Similarity=0.150 Sum_probs=34.3
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI 471 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~ 471 (720)
..+|+|||||.+||+||.+|+++ |++|+|+|++...++
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~-G~~VtV~E~~~~~GG 467 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKY-GVDVTVYEALHVVGG 467 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCCcc
Confidence 45999999999999999999999 999999999866543
No 211
>KOG1399|consensus
Probab=98.16 E-value=7.8e-06 Score=92.49 Aligned_cols=36 Identities=28% Similarity=0.403 Sum_probs=33.3
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 469 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~ 469 (720)
.-+|+|||||++||++|+.|.++ |+.|+|+||.+..
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~-g~~v~vfEr~~~i 41 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLRE-GHEVVVFERTDDI 41 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHC-CCCceEEEecCCc
Confidence 34999999999999999999999 9999999999655
No 212
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.15 E-value=3.9e-05 Score=85.70 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 709 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg 709 (720)
.++.+.+ ++.|++|+.+++|++|.. ++++.++.. +++ ++.++ .||+|+|......+|..+|+.
T Consensus 195 ~~l~~~l-~~~gI~v~~~~~v~~i~~--~~~~~~v~~---~~~--~i~~d-~vi~a~G~~p~~~~l~~~gl~ 257 (444)
T PRK09564 195 DVMEEEL-RENGVELHLNEFVKSLIG--EDKVEGVVT---DKG--EYEAD-VVIVATGVKPNTEFLEDTGLK 257 (444)
T ss_pred HHHHHHH-HHCCCEEEcCCEEEEEec--CCcEEEEEe---CCC--EEEcC-EEEECcCCCcCHHHHHhcCcc
Confidence 3455555 578999999999999963 344555543 233 58998 599999987677788888875
No 213
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.14 E-value=1.1e-05 Score=92.15 Aligned_cols=33 Identities=24% Similarity=0.509 Sum_probs=31.5
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
+|||||||||.+|+.||++|++. |++|+|||+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~-G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADY-GAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc
Confidence 48999999999999999999999 9999999985
No 214
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.14 E-value=1.4e-05 Score=98.07 Aligned_cols=39 Identities=26% Similarity=0.161 Sum_probs=35.0
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH 472 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s 472 (720)
..+|+|||||++||+||.+|+++ |++|+|+||....++-
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~-G~~VtVfE~~~~~GG~ 344 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVE-GFPVTVFEAFHDLGGV 344 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-CCeEEEEeeCCCCCce
Confidence 45899999999999999999999 9999999998766543
No 215
>KOG0029|consensus
Probab=98.13 E-value=2.3e-06 Score=98.04 Aligned_cols=42 Identities=29% Similarity=0.436 Sum_probs=37.5
Q ss_pred CCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408 430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH 472 (720)
Q Consensus 430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s 472 (720)
.....+|||||||++||+||++|.+. |++|+|||+.++.++.
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~-G~~V~VLEARdRvGGR 53 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDF-GFDVLVLEARDRVGGR 53 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHc-CCceEEEeccCCcCce
Confidence 33456999999999999999999999 9999999999887665
No 216
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.13 E-value=2.5e-05 Score=87.53 Aligned_cols=41 Identities=32% Similarity=0.361 Sum_probs=36.8
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408 431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH 472 (720)
Q Consensus 431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s 472 (720)
+...||||||+|.+||++|+.|.++ |++|+|||+.+++++.
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~ka-G~~v~ilEar~r~GGR 45 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKA-GYQVQILEARDRVGGR 45 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhc-CcEEEEEeccCCcCce
Confidence 4457999999999999999999999 9999999998877554
No 217
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.12 E-value=9.4e-05 Score=81.88 Aligned_cols=64 Identities=22% Similarity=0.296 Sum_probs=44.5
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCCC
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP 710 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgp 710 (720)
.++...+ ++.|++|++++.|++|..+ +. ..|++. +|+ ++.++ .||+|+|......|+..+|+..
T Consensus 190 ~~l~~~l-~~~GV~i~~~~~V~~i~~~--~~-~~v~l~--~g~--~i~aD-~Vv~a~G~~pn~~l~~~~gl~~ 253 (396)
T PRK09754 190 RYLLQRH-QQAGVRILLNNAIEHVVDG--EK-VELTLQ--SGE--TLQAD-VVIYGIGISANDQLAREANLDT 253 (396)
T ss_pred HHHHHHH-HHCCCEEEeCCeeEEEEcC--CE-EEEEEC--CCC--EEECC-EEEECCCCChhhHHHHhcCCCc
Confidence 3444444 4789999999999999642 22 234433 354 68898 5999999877777777788753
No 218
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.12 E-value=1.8e-05 Score=91.48 Aligned_cols=34 Identities=29% Similarity=0.443 Sum_probs=28.9
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 469 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~ 469 (720)
.|+|||||++||++|+.|.++ |+.|+++||....
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~-g~~~~~fE~~~~i 36 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEE-GLEVTCFEKSDDI 36 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHT-T-EEEEEESSSSS
T ss_pred EEEEECccHHHHHHHHHHHHC-CCCCeEEecCCCC
Confidence 699999999999999999999 9999999998655
No 219
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.10 E-value=1.6e-05 Score=95.20 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=33.8
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 470 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~ 470 (720)
...||+|||||.+||+||.+|+++ |++|+|+|+....+
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~-G~~V~v~e~~~~~G 467 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKR-GYDVTVFEALHEIG 467 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence 346999999999999999999999 99999999975543
No 220
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.09 E-value=7.6e-05 Score=82.71 Aligned_cols=33 Identities=39% Similarity=0.509 Sum_probs=30.3
Q ss_pred cEEEECCcHHHHHHHHHHHhcCC-CcEEEEccCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGGD 468 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G-~KVLVLEKG~~ 468 (720)
.|+|||||++||++|+.|+++ | ++|+|+||...
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~-g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKH-SHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCCCEEEEecCCc
Confidence 699999999999999999999 8 59999999743
No 221
>KOG2614|consensus
Probab=98.09 E-value=2.2e-05 Score=86.90 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=31.1
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
-+|||||||++||++|..|+++ |++|+|+|+..
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~-G~~v~VlE~~e 35 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRK-GIDVVVLESRE 35 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHc-CCeEEEEeecc
Confidence 4899999999999999999999 99999999964
No 222
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.09 E-value=3.7e-05 Score=94.40 Aligned_cols=38 Identities=18% Similarity=0.217 Sum_probs=34.4
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI 471 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~ 471 (720)
..||+|||||+||++||++|++. |++|+|+|+....++
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~-G~~VTV~Ek~~~lGG 574 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARA-GHPVTVFEKKEKPGG 574 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCeEEEEecccccCc
Confidence 46999999999999999999999 999999999866543
No 223
>PLN02268 probable polyamine oxidase
Probab=98.07 E-value=4e-06 Score=93.29 Aligned_cols=37 Identities=30% Similarity=0.449 Sum_probs=34.8
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH 472 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s 472 (720)
+|||||||++||+||++|.++ |++|+||||.++.++.
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~-g~~v~vlEa~~r~GGr 38 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDA-SFKVTLLESRDRIGGR 38 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCCCce
Confidence 799999999999999999999 9999999999888665
No 224
>PRK09897 hypothetical protein; Provisional
Probab=98.06 E-value=6.7e-05 Score=86.85 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=30.3
Q ss_pred cEEEECCcHHHHHHHHHHHhc-CCCcEEEEccCCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDT 469 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea-~G~KVLVLEKG~~~ 469 (720)
+|+|||||.+|+.+|.+|++. ..++|+|+|++...
T Consensus 3 ~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~ 38 (534)
T PRK09897 3 KIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA 38 (534)
T ss_pred eEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence 899999999999999999985 13589999997544
No 225
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=98.06 E-value=3e-05 Score=90.14 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=48.1
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcch
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 699 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~S 699 (720)
..|.+.+ ++.|++|++++.|++|+.+ +|+|.||...+. +|+...|+|+ .||||||++..
T Consensus 123 ~~L~~~~-~~~gi~i~~~~~~~~Li~~-~g~v~Ga~~~~~~~g~~~~i~Ak-aVILATGG~~~ 182 (565)
T TIGR01816 123 HTLYQQN-LKADTSFFNEYFALDLLME-DGECRGVIAYCLETGEIHRFRAK-AVVLATGGYGR 182 (565)
T ss_pred HHHHHHH-HhCCCEEEeccEEEEEEee-CCEEEEEEEEEcCCCcEEEEEeC-eEEECCCCccc
Confidence 3444544 4789999999999999998 899999998654 5777789996 79999999864
No 226
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.03 E-value=4.3e-06 Score=92.66 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=33.7
Q ss_pred cEEEECCcHHHHHHHHHHHhcCC--CcEEEEccCCCCCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSS--LKVLLIEAGGDTPIH 472 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G--~KVLVLEKG~~~~~s 472 (720)
+|||||||++||+||+.|+++ | ++|+||||....++.
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~-G~~~~V~vlEa~~~~GGr 40 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKK-GPDADITLLEASDRLGGK 40 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHh-CCCCCEEEEEcCCCCcce
Confidence 699999999999999999998 7 899999998877554
No 227
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.02 E-value=4.4e-06 Score=93.53 Aligned_cols=35 Identities=31% Similarity=0.501 Sum_probs=33.0
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.+|||||||||.+|+.||++||++ |++|+|+||+.
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~-g~~V~lie~~~ 36 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKA-GWRVALIEQSN 36 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHC-CCeEEEEcCCC
Confidence 468999999999999999999999 99999999974
No 228
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.02 E-value=3.8e-05 Score=89.07 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=33.4
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 470 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~ 470 (720)
.-+|+|||+|.+||++|..|++. |++|+|+|+....+
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~-G~~V~v~e~~~~~G 173 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRM-GHAVTIFEAGPKLG 173 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence 34899999999999999999999 99999999986654
No 229
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.02 E-value=0.00012 Score=86.34 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=33.8
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 470 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~ 470 (720)
..+|+|||||.+||++|..|++. |++|+|+|+....+
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~-G~~Vtv~e~~~~~G 346 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARA-GVQVDVFDRHPEIG 346 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHc-CCcEEEEeCCCCCC
Confidence 45899999999999999999999 99999999987653
No 230
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.01 E-value=2.2e-05 Score=89.24 Aligned_cols=38 Identities=18% Similarity=0.333 Sum_probs=34.1
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 470 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~ 470 (720)
...+|+|||||.+|+++|..|++. |++|+|+|+....+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~-G~~V~i~e~~~~~g 177 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA-GVQVVVFDRHPEIG 177 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCC
Confidence 345999999999999999999999 99999999986653
No 231
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.97 E-value=6.8e-06 Score=91.18 Aligned_cols=37 Identities=43% Similarity=0.605 Sum_probs=33.9
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI 471 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~ 471 (720)
+||||||||++|+++|.+|++. |.+|+||||+...++
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~-G~~V~viEk~~~iGG 38 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL-NKRVLVVEKRNHIGG 38 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCCCCC
Confidence 6999999999999999999998 999999999866644
No 232
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.97 E-value=7.2e-05 Score=84.78 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=30.3
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
||||||||.+|+.||..|++. |++|+|+||+
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~-g~~v~~~e~~ 33 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQL-GADVTVIERD 33 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhC-CCeEEEEEcc
Confidence 899999999999999999999 9999999987
No 233
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.96 E-value=6.6e-06 Score=92.05 Aligned_cols=35 Identities=34% Similarity=0.541 Sum_probs=33.1
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.+|||||||||.+|++||.+|++. |++|+|+||+.
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~-g~~V~liE~~~ 36 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASA-GKKVALVEESK 36 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhC-CCEEEEEecCC
Confidence 468999999999999999999999 99999999985
No 234
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.95 E-value=7.7e-06 Score=92.28 Aligned_cols=34 Identities=32% Similarity=0.547 Sum_probs=32.3
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
+|||||||||.+|++||++|++. |+||+|+||+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~~~ 35 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEH-GAKALLVEAKK 35 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-CCcEEEecccc
Confidence 58999999999999999999999 99999999964
No 235
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.94 E-value=8.5e-06 Score=91.09 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=34.9
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC---CCcEEEEccCCCCCCC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVS---SLKVLLIEAGGDTPIH 472 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~---G~KVLVLEKG~~~~~s 472 (720)
.||||||||++||+||++|+++. |++|+|+||....++.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~ 44 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGK 44 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcce
Confidence 49999999999999999999874 8999999998877554
No 236
>PRK06116 glutathione reductase; Validated
Probab=97.94 E-value=7.8e-06 Score=91.76 Aligned_cols=34 Identities=38% Similarity=0.568 Sum_probs=32.3
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
.+|||||||||.+|++||.+|+++ |++|+|+|++
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~-G~~V~liE~~ 36 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMY-GAKVALIEAK 36 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc
Confidence 368999999999999999999999 9999999996
No 237
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.93 E-value=9.6e-05 Score=83.90 Aligned_cols=39 Identities=18% Similarity=0.029 Sum_probs=33.4
Q ss_pred ccEEEECCcHHHHHHHHHHHhc---CCCcEEEEccCCCCCCC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEV---SSLKVLLIEAGGDTPIH 472 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea---~G~KVLVLEKG~~~~~s 472 (720)
.++=|||||+|+|+||.+|-+. +|.+|.+||+....+++
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGs 44 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGS 44 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCc
Confidence 4788999999999999999986 47899999998666554
No 238
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.93 E-value=9.1e-06 Score=91.32 Aligned_cols=34 Identities=44% Similarity=0.737 Sum_probs=32.3
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
.+|||||||||.+|++||++|++. |++|+|||++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKL-GKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 568999999999999999999999 9999999994
No 239
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.92 E-value=9.3e-06 Score=84.52 Aligned_cols=57 Identities=26% Similarity=0.370 Sum_probs=43.7
Q ss_pred CC-CeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHc
Q psy14408 647 RT-NLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLS 706 (720)
Q Consensus 647 ~a-GVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~S 706 (720)
+. |++++.++.|++|..+ +++.++++.+. .|...++.++ .||+|+|......+|..+
T Consensus 188 ~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~~~~~~l~~~ 246 (300)
T TIGR01292 188 KNPNIEFLWNSTVKEIVGD--NKVEGVKIKNTVTGEEEELKVD-GVFIAIGHEPNTELLKGL 246 (300)
T ss_pred hCCCeEEEeccEEEEEEcc--CcEEEEEEEecCCCceEEEEcc-EEEEeeCCCCChHHHHHh
Confidence 55 9999999999999855 36777777653 4556789998 699999977666676654
No 240
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.91 E-value=0.00012 Score=89.86 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=34.1
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI 471 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~ 471 (720)
..+|+|||||.+|++||++|+++ |++|+|+|+....++
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~-G~~VtV~Ek~~~~GG 576 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARA-GHPVTVFEREENAGG 576 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCeEEEEecccccCc
Confidence 45999999999999999999999 999999999866543
No 241
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.90 E-value=5.9e-05 Score=82.61 Aligned_cols=60 Identities=25% Similarity=0.270 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCC--cEEEEEEEecCCcEEEEEcCcEEEEccCC
Q psy14408 635 AADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN--VATGVEYVNSKGETVRVTANKEVILTAGA 696 (720)
Q Consensus 635 aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gG--rAtGV~v~dt~G~e~tIkAkK~VVVAAGa 696 (720)
....|++.++ ++.+..+..+.+|++|..+.++ ...-|++.+.+|...++.|+ .||||+|.
T Consensus 96 ef~dYl~Wva-~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar-~vVla~G~ 157 (341)
T PF13434_consen 96 EFNDYLRWVA-EQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRAR-NVVLATGG 157 (341)
T ss_dssp HHHHHHHHHH-CCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEES-EEEE----
T ss_pred HHHHHHHHHH-HhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeC-eEEECcCC
Confidence 3456788877 5666668889999999987222 34556665556777899997 59999994
No 242
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.89 E-value=1.3e-05 Score=90.64 Aligned_cols=35 Identities=29% Similarity=0.477 Sum_probs=32.7
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~ 468 (720)
+|||||||||.+|++||.+|++. |++|+|||++..
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~-G~~V~lie~~~~ 38 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQL-GLKTAVVEKKYW 38 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCC
Confidence 58999999999999999999999 999999999743
No 243
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=4.5e-05 Score=82.82 Aligned_cols=59 Identities=22% Similarity=0.354 Sum_probs=50.3
Q ss_pred cCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHc
Q psy14408 646 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLS 706 (720)
Q Consensus 646 e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~S 706 (720)
.-.+++|++++.-++|.-+ +.+|+|+++++. .|+.+.+.-. .|+|--|-+.+..+|.-+
T Consensus 401 sl~Nv~ii~na~Ttei~Gd-g~kV~Gl~Y~dr~sge~~~l~Le-GvFVqIGL~PNT~WLkg~ 460 (520)
T COG3634 401 SLPNVTIITNAQTTEVKGD-GDKVTGLEYRDRVSGEEHHLELE-GVFVQIGLLPNTEWLKGA 460 (520)
T ss_pred cCCCcEEEecceeeEEecC-CceecceEEEeccCCceeEEEee-eeEEEEecccChhHhhch
Confidence 4568999999999999988 889999999986 6777778776 599999998888888654
No 244
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.87 E-value=0.00023 Score=79.68 Aligned_cols=59 Identities=32% Similarity=0.442 Sum_probs=42.5
Q ss_pred HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHH-cCCC
Q psy14408 639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLL-SGIG 709 (720)
Q Consensus 639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~-SGIg 709 (720)
+...++ ++.||+|++++.|++|.-+ ||.+.+ |++ +|.++ .||-|||.-. +.++.. +|+.
T Consensus 214 ~a~~~L-~~~GV~v~l~~~Vt~v~~~------~v~~~~--g~~-~I~~~-tvvWaaGv~a-~~~~~~l~~~e 273 (405)
T COG1252 214 YAERAL-EKLGVEVLLGTPVTEVTPD------GVTLKD--GEE-EIPAD-TVVWAAGVRA-SPLLKDLSGLE 273 (405)
T ss_pred HHHHHH-HHCCCEEEcCCceEEECCC------cEEEcc--CCe-eEecC-EEEEcCCCcC-ChhhhhcChhh
Confidence 455555 6899999999999999755 676665 543 69997 6999999754 455555 4533
No 245
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.84 E-value=1.6e-05 Score=85.55 Aligned_cols=38 Identities=32% Similarity=0.530 Sum_probs=35.3
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH 472 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s 472 (720)
+|+||||||++|+++|..||+. |++||||||..+.++.
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~-gk~VLIvekR~HIGGN 39 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQL-GKRVLIVEKRNHIGGN 39 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHc-CCEEEEEeccccCCCc
Confidence 7999999999999999988888 9999999999888665
No 246
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.84 E-value=1.5e-05 Score=90.17 Aligned_cols=35 Identities=34% Similarity=0.630 Sum_probs=32.8
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
..|||||||||.+|+.||.+|++. |++|+|||++.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~~ 37 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQL-GLKTALVEKGK 37 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC-CCeEEEEEccC
Confidence 368999999999999999999999 99999999973
No 247
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.82 E-value=1.4e-05 Score=89.72 Aligned_cols=38 Identities=16% Similarity=0.276 Sum_probs=33.3
Q ss_pred cEEEECCcHHHHHHHHHHHhc-----CCCcEEEEccCCCCCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEV-----SSLKVLLIEAGGDTPIH 472 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea-----~G~KVLVLEKG~~~~~s 472 (720)
+|||||||++||+||++|+++ .|++|+||||..+.++.
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr 45 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGK 45 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccce
Confidence 699999999999999999985 14899999999887655
No 248
>PRK14694 putative mercuric reductase; Provisional
Probab=97.81 E-value=2e-05 Score=89.10 Aligned_cols=37 Identities=27% Similarity=0.426 Sum_probs=34.2
Q ss_pred CCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.+..|||||||||.+|++||.+|++. |++|+|+|++.
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~-g~~v~lie~~~ 39 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATER-GARVTLIERGT 39 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEEccc
Confidence 45678999999999999999999999 99999999974
No 249
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.81 E-value=1.6e-05 Score=87.57 Aligned_cols=34 Identities=50% Similarity=0.699 Sum_probs=31.2
Q ss_pred cEEEECCcHHHHHHHHHH--HhcCCCcEEEEccCCCC
Q psy14408 435 DIIIVGASAAGCVLANRL--SEVSSLKVLLIEAGGDT 469 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~L--Aea~G~KVLVLEKG~~~ 469 (720)
||||||||++|+++|++| ++. |++|+|||+....
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~-g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARP-GLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCCccc
Confidence 999999999999999999 777 9999999997554
No 250
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.79 E-value=2e-05 Score=88.81 Aligned_cols=34 Identities=29% Similarity=0.523 Sum_probs=32.0
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~ 468 (720)
|||||||||.+|++||.+|++. |++|+|+||+..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~-g~~v~lie~~~~ 34 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAEL-GASVAMVERGPL 34 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCcc
Confidence 6999999999999999999999 999999999753
No 251
>PLN02568 polyamine oxidase
Probab=97.79 E-value=2.2e-05 Score=90.92 Aligned_cols=39 Identities=31% Similarity=0.406 Sum_probs=35.1
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCC-----CcEEEEccCCCCCCC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSS-----LKVLLIEAGGDTPIH 472 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G-----~KVLVLEKG~~~~~s 472 (720)
..||||||||++||+||++|++. | ++|+||||+...++.
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~-g~~~~~~~v~v~E~~~~~GGr 48 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTS-SAANDMFELTVVEGGDRIGGR 48 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhc-ccccCCceEEEEeCCCCcCCe
Confidence 46999999999999999999988 7 999999999877554
No 252
>KOG2311|consensus
Probab=97.78 E-value=6e-05 Score=84.53 Aligned_cols=36 Identities=25% Similarity=0.586 Sum_probs=33.0
Q ss_pred CCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
.+..|||||||||.||+-||...|+- |.+.+||-..
T Consensus 25 ~~~~~dVvVIGgGHAG~EAAaAaaR~-Ga~TlLlT~~ 60 (679)
T KOG2311|consen 25 STSTYDVVVIGGGHAGCEAAAAAARL-GARTLLLTHN 60 (679)
T ss_pred CCCcccEEEECCCccchHHHHHHHhc-CCceEEeecc
Confidence 35679999999999999999999999 9999999876
No 253
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.77 E-value=0.00052 Score=74.65 Aligned_cols=59 Identities=20% Similarity=0.292 Sum_probs=40.7
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 709 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg 709 (720)
.++.+.+ ++.|++++.++.|++|. ++ +|.+.+ |+ ++.++ .||+|+|... ..+|..+|+.
T Consensus 195 ~~~~~~l-~~~gV~v~~~~~v~~i~---~~---~v~~~~--g~--~i~~D-~vi~a~G~~p-~~~l~~~gl~ 253 (364)
T TIGR03169 195 RLVLRLL-ARRGIEVHEGAPVTRGP---DG---ALILAD--GR--TLPAD-AILWATGARA-PPWLAESGLP 253 (364)
T ss_pred HHHHHHH-HHCCCEEEeCCeeEEEc---CC---eEEeCC--CC--EEecC-EEEEccCCCh-hhHHHHcCCC
Confidence 3444445 57899999999999884 22 354433 53 68888 5999999754 4566777764
No 254
>PTZ00058 glutathione reductase; Provisional
Probab=97.76 E-value=2.6e-05 Score=90.67 Aligned_cols=37 Identities=27% Similarity=0.443 Sum_probs=34.0
Q ss_pred CCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.+.+|||||||||.+|.+||.+||+. |++|+||||+.
T Consensus 45 ~~~~yDvvVIG~G~aG~~aA~~aa~~-G~~ValIEk~~ 81 (561)
T PTZ00058 45 PRMVYDLIVIGGGSGGMAAARRAARN-KAKVALVEKDY 81 (561)
T ss_pred CCccccEEEECcCHHHHHHHHHHHHc-CCeEEEEeccc
Confidence 34679999999999999999999999 99999999974
No 255
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.76 E-value=2.6e-05 Score=90.36 Aligned_cols=34 Identities=29% Similarity=0.492 Sum_probs=32.2
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|||||||||.+|++||.+|+++ |++|+||||+.
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~-g~~V~liE~~~ 37 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRA-KLDTLIIEKDD 37 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCC
Confidence 48999999999999999999999 99999999974
No 256
>PRK13984 putative oxidoreductase; Provisional
Probab=97.73 E-value=0.00027 Score=82.62 Aligned_cols=39 Identities=23% Similarity=0.204 Sum_probs=34.6
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI 471 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~ 471 (720)
...+|+|||+|.+|+++|..|+++ |++|+|+|+....++
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~-G~~v~vie~~~~~gG 320 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATM-GYEVTVYESLSKPGG 320 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCCc
Confidence 345899999999999999999999 999999999876543
No 257
>KOG2960|consensus
Probab=97.73 E-value=5.3e-05 Score=77.62 Aligned_cols=35 Identities=37% Similarity=0.499 Sum_probs=31.6
Q ss_pred CcccEEEECCcHHHHHHHHHHHh-cCCCcEEEEccC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSE-VSSLKVLLIEAG 466 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAe-a~G~KVLVLEKG 466 (720)
.+.||||||+|.+||++|+.+++ ++.+||.+||..
T Consensus 75 AesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~S 110 (328)
T KOG2960|consen 75 AESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESS 110 (328)
T ss_pred hccceEEECCCccccceeeeeeccCCCceEEEEEee
Confidence 35699999999999999999995 578999999986
No 258
>PRK13748 putative mercuric reductase; Provisional
Probab=97.73 E-value=2.7e-05 Score=89.78 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=32.7
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
.+|||||||||.+|++||.+|++. |++|+|||++
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~-G~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQ-GARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecC
Confidence 479999999999999999999999 9999999997
No 259
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=2.7e-05 Score=88.37 Aligned_cols=37 Identities=30% Similarity=0.311 Sum_probs=33.9
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH 472 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s 472 (720)
-|+|+|||++||+||++||++ |++|+|+|++.+.++-
T Consensus 2 rVai~GaG~AgL~~a~~La~~-g~~vt~~ea~~~~GGk 38 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADA-GYDVTLYEARDRLGGK 38 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhC-CCceEEEeccCccCce
Confidence 599999999999999999999 9999999999887543
No 260
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.72 E-value=3.3e-05 Score=75.97 Aligned_cols=31 Identities=39% Similarity=0.590 Sum_probs=29.8
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
||||||||.+|+.||.+|++. |++|+|+|+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~-~~~v~ii~~~ 31 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP-GAKVLIIEKS 31 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-TSEEEEESSS
T ss_pred CEEEEecHHHHHHHHHHHhcC-CCeEEEEecc
Confidence 799999999999999999988 9999999886
No 261
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.69 E-value=0.00028 Score=79.78 Aligned_cols=41 Identities=29% Similarity=0.377 Sum_probs=32.0
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408 431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH 472 (720)
Q Consensus 431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s 472 (720)
+.+|||||+|.|..-+..|..|+++ |.|||.|||+...++.
T Consensus 2 ~~~yDviI~GTGl~esila~als~~-GkkVLhiD~n~yYGg~ 42 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRS-GKKVLHIDRNDYYGGE 42 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHT-T--EEEE-SSSSSCGG
T ss_pred CccceEEEECCCcHHHHHHHHHHhc-CCEEEecCCCCCcCCc
Confidence 4689999999999999999999999 9999999999877544
No 262
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.68 E-value=0.00081 Score=75.35 Aligned_cols=37 Identities=14% Similarity=0.297 Sum_probs=32.7
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 469 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~ 469 (720)
...+|||||||.+|+.+|.+|.+. +++|+|||+..+.
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~-~~~ItlI~~~~~~ 45 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPK-KYNITVISPRNHM 45 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcC-CCeEEEEcCCCCc
Confidence 445999999999999999999877 8999999997664
No 263
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.66 E-value=0.00062 Score=82.95 Aligned_cols=66 Identities=9% Similarity=0.239 Sum_probs=48.7
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 709 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg 709 (720)
..+.+.+ ++.|++|++++.|++|..++.+.+.+|.+.+ |+ ++.++ .||+|+|......|+..+|+.
T Consensus 191 ~~l~~~L-~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~d--G~--~i~~D-~Vv~A~G~rPn~~L~~~~Gl~ 256 (847)
T PRK14989 191 EQLRRKI-ESMGVRVHTSKNTLEIVQEGVEARKTMRFAD--GS--ELEVD-FIVFSTGIRPQDKLATQCGLA 256 (847)
T ss_pred HHHHHHH-HHCCCEEEcCCeEEEEEecCCCceEEEEECC--CC--EEEcC-EEEECCCcccCchHHhhcCcc
Confidence 3455555 5889999999999999754223455555544 64 68898 699999988887787788875
No 264
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.64 E-value=4.1e-05 Score=87.66 Aligned_cols=33 Identities=21% Similarity=0.426 Sum_probs=31.4
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
.|||||||||.+|+.||.+|+++ |++|+|||++
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~-G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAH-GKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC-CCeEEEEecc
Confidence 58999999999999999999999 9999999974
No 265
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.63 E-value=5.5e-05 Score=83.47 Aligned_cols=35 Identities=40% Similarity=0.620 Sum_probs=31.5
Q ss_pred cEEEECCcHHHHHHHHHHHhc-CCCcEEEEccCCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDT 469 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea-~G~KVLVLEKG~~~ 469 (720)
||||||||++||++|++|+++ .|++|+|||++...
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~ 36 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTI 36 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence 899999999999999999974 59999999998643
No 266
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.63 E-value=0.00095 Score=75.11 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=42.9
Q ss_pred HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408 639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 709 (720)
Q Consensus 639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg 709 (720)
.+.+.+ ++.|++++.+++|++|.. . .|++.+ |+ ++.++ .||+|+|......+|..+|+.
T Consensus 194 ~l~~~l-~~~gI~i~~~~~v~~i~~---~---~v~~~~--g~--~~~~D-~vl~a~G~~pn~~~l~~~gl~ 252 (438)
T PRK13512 194 PILDEL-DKREIPYRLNEEIDAING---N---EVTFKS--GK--VEHYD-MIIEGVGTHPNSKFIESSNIK 252 (438)
T ss_pred HHHHHH-HhcCCEEEECCeEEEEeC---C---EEEECC--CC--EEEeC-EEEECcCCCcChHHHHhcCcc
Confidence 344444 578999999999999852 1 344433 54 57888 599999987777788888764
No 267
>PLN02546 glutathione reductase
Probab=97.60 E-value=5.7e-05 Score=87.88 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=32.1
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEcc
Q psy14408 431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 465 (720)
Q Consensus 431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEK 465 (720)
..+|||||||||.+|..||..||+. |+||+|+|+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNF-GASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEec
Confidence 4568999999999999999999999 999999996
No 268
>PRK14727 putative mercuric reductase; Provisional
Probab=97.56 E-value=6.7e-05 Score=85.31 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=34.8
Q ss_pred CCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408 430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 469 (720)
Q Consensus 430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~ 469 (720)
+...+||||||||.+|+++|.+|++. |.+|+|+||+...
T Consensus 13 ~~~~~dvvvIG~G~aG~~~a~~~~~~-g~~v~~ie~~~~~ 51 (479)
T PRK14727 13 SKLQLHVAIIGSGSAAFAAAIKAAEH-GARVTIIEGADVI 51 (479)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEEccCcc
Confidence 33568999999999999999999999 9999999997544
No 269
>PTZ00449 104 kDa microneme/rhoptry antigen; Provisional
Probab=97.56 E-value=0.00066 Score=76.62 Aligned_cols=92 Identities=28% Similarity=0.421 Sum_probs=77.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q psy14408 131 NNPNSPFNPYNPSSVFNPKNIDSVFNPRNPDSPYYNQYQFLYSPLSPYNPRSLFSSQNPLSPLSPLNANSPYNPRNQISY 210 (720)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (720)
..|+.|-.|-.|.+|-.|++|.++..|+.|-||. -|-.+.-|-|+--+++|.+|-+|.++..|-+|+.+-++
T Consensus 580 e~PK~Pk~PKdPksPK~PK~Prspq~P~~PkSPk--------~Pe~~d~PkSPK~PespksPKsP~sPqrP~SPkRPEsP 651 (943)
T PTZ00449 580 EFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPK--------LPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGP 651 (943)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CcccccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCC
Confidence 6678888888888888888888888888888888 67777777777778888888888888888888888888
Q ss_pred cCCCCCCCCCCCCCCCCCCC
Q psy14408 211 YNIENPKSPYNIHNPESPLY 230 (720)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~ 230 (720)
-.|+.||+|-++-.|.+|-+
T Consensus 652 KiPesPK~PkSPKpP~dPKF 671 (943)
T PTZ00449 652 KIIKSPKPPKSPKPPFDPKF 671 (943)
T ss_pred CCCCCCCCCCCCCCCCCCcc
Confidence 88999999999999988874
No 270
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.56 E-value=6.8e-05 Score=84.41 Aligned_cols=35 Identities=26% Similarity=0.233 Sum_probs=32.1
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 469 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~ 469 (720)
-||||||||.+|+.||+.||++ |++|+|+|+....
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~-Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKR-GVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCcc
Confidence 3999999999999999999999 9999999986544
No 271
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.51 E-value=8.2e-05 Score=88.08 Aligned_cols=34 Identities=26% Similarity=0.437 Sum_probs=32.2
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
.+|||||||||.+|..||.++|+. |+||+|||++
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~-G~kV~lie~~ 148 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMER-GLKVIIFTGD 148 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCC
Confidence 478999999999999999999999 9999999975
No 272
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.50 E-value=0.0001 Score=84.43 Aligned_cols=35 Identities=20% Similarity=0.432 Sum_probs=31.7
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
.+|||||||||.+|..||.++|+..|+||+||||+
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 36899999999999999999999538999999984
No 273
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.50 E-value=0.0001 Score=87.17 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=33.9
Q ss_pred CCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.....+|||||||++||++|+.|+++ |++|+|+||..
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~-Gi~V~V~Er~~ 114 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKK-GFDVLVFEKDL 114 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEeccc
Confidence 35568999999999999999999999 99999999974
No 274
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.48 E-value=0.0011 Score=80.29 Aligned_cols=64 Identities=19% Similarity=0.329 Sum_probs=48.0
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 709 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg 709 (720)
.++...+ ++.|++|++++.|++|..+ +++.+|++.+ |. ++.++ .||+|+|......|+..+|+.
T Consensus 186 ~~l~~~l-~~~GV~v~~~~~v~~i~~~--~~~~~v~~~d--G~--~i~~D-~Vi~a~G~~Pn~~la~~~gl~ 249 (785)
T TIGR02374 186 RLLQREL-EQKGLTFLLEKDTVEIVGA--TKADRIRFKD--GS--SLEAD-LIVMAAGIRPNDELAVSAGIK 249 (785)
T ss_pred HHHHHHH-HHcCCEEEeCCceEEEEcC--CceEEEEECC--CC--EEEcC-EEEECCCCCcCcHHHHhcCCc
Confidence 3444444 5789999999999999744 4567777654 64 68898 699999987777777777764
No 275
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.43 E-value=0.00015 Score=87.38 Aligned_cols=41 Identities=27% Similarity=0.391 Sum_probs=36.2
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408 431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH 472 (720)
Q Consensus 431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s 472 (720)
....+|||||||++||+||++|++. |++|+|||+....++.
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~-g~~v~v~E~~~r~GGr 276 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSM-GFKVVVLEGRARPGGR 276 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeccccCCCc
Confidence 3456999999999999999999999 9999999998776544
No 276
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.42 E-value=0.00013 Score=82.40 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=31.6
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~ 468 (720)
.||||||||.+|+.||+.||++ |++|+|+|+...
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~-G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQA-GVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhC-CCcEEEEecccc
Confidence 3899999999999999999999 999999998654
No 277
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.40 E-value=0.0053 Score=59.62 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=27.8
Q ss_pred EEECCcHHHHHHHHHHHhcC----CCcEEEEccCCC
Q psy14408 437 IIVGASAAGCVLANRLSEVS----SLKVLLIEAGGD 468 (720)
Q Consensus 437 VIIGSGiAGLvAA~~LAea~----G~KVLVLEKG~~ 468 (720)
+|||+|++|+++|.+|++.. ..+|+|+|+...
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 59999999999999999873 578999999643
No 278
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.37 E-value=0.00016 Score=81.49 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=38.0
Q ss_pred ccCCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408 428 VKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH 472 (720)
Q Consensus 428 I~~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s 472 (720)
+..+..-+|+|||||++|+.||+.||+. |++|.||||.+..++.
T Consensus 119 ~~~~v~~svLVIGGGvAGitAAl~La~~-G~~v~LVEKepsiGGr 162 (622)
T COG1148 119 IKVEVSKSVLVIGGGVAGITAALELADM-GFKVYLVEKEPSIGGR 162 (622)
T ss_pred HHHhhccceEEEcCcHHHHHHHHHHHHc-CCeEEEEecCCccccc
Confidence 4444556999999999999999999999 9999999998777554
No 279
>KOG0405|consensus
Probab=97.34 E-value=0.0017 Score=70.88 Aligned_cols=36 Identities=28% Similarity=0.390 Sum_probs=33.4
Q ss_pred CCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
...+||.+|||||.+|+.+|++.|+. |.||.|+|..
T Consensus 17 ~~k~fDylvIGgGSGGvasARrAa~~-GAkv~l~E~~ 52 (478)
T KOG0405|consen 17 DVKDFDYLVIGGGSGGVASARRAASH-GAKVALCELP 52 (478)
T ss_pred cccccceEEEcCCcchhHHhHHHHhc-CceEEEEecC
Confidence 34589999999999999999999999 9999999987
No 280
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.33 E-value=0.0026 Score=69.94 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=42.6
Q ss_pred cCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCCC
Q psy14408 646 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP 710 (720)
Q Consensus 646 e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgp 710 (720)
++.|++++.++.|++|..+ ++. ..|++. +|+ ++.++ .||+|+|......++..+|+.-
T Consensus 194 ~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~--~g~--~i~~D-~vI~a~G~~p~~~l~~~~gl~~ 251 (377)
T PRK04965 194 TEMGVHLLLKSQLQGLEKT-DSG-IRATLD--SGR--SIEVD-AVIAAAGLRPNTALARRAGLAV 251 (377)
T ss_pred HhCCCEEEECCeEEEEEcc-CCE-EEEEEc--CCc--EEECC-EEEECcCCCcchHHHHHCCCCc
Confidence 3679999999999999865 332 234443 353 68898 5999999877777888888753
No 281
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.25 E-value=0.00029 Score=79.62 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=31.6
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 469 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~ 469 (720)
+|||||||.+|++||.+|++. |++|+||||+...
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~-g~~V~lie~~~~G 35 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN-GKNVTLIDEADLG 35 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEECCccc
Confidence 799999999999999999999 9999999997543
No 282
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.21 E-value=0.00048 Score=59.28 Aligned_cols=33 Identities=30% Similarity=0.497 Sum_probs=31.0
Q ss_pred EEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408 436 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 469 (720)
Q Consensus 436 VVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~ 469 (720)
|+|||||..|+-+|..|++. |.+|+|||+++..
T Consensus 2 vvViGgG~ig~E~A~~l~~~-g~~vtli~~~~~~ 34 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAEL-GKEVTLIERSDRL 34 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHT-TSEEEEEESSSSS
T ss_pred EEEECcCHHHHHHHHHHHHh-CcEEEEEeccchh
Confidence 79999999999999999999 9999999999654
No 283
>KOG0685|consensus
Probab=97.18 E-value=0.00038 Score=78.47 Aligned_cols=43 Identities=33% Similarity=0.394 Sum_probs=36.6
Q ss_pred CCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408 430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH 472 (720)
Q Consensus 430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s 472 (720)
...+.-|||||||++||+||.+|-+..+..|+|+|+.++.++.
T Consensus 18 ~~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGR 60 (498)
T KOG0685|consen 18 ARGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGR 60 (498)
T ss_pred ccCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCce
Confidence 3445589999999999999999998746789999999888665
No 284
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.16 E-value=0.0028 Score=71.78 Aligned_cols=32 Identities=31% Similarity=0.408 Sum_probs=30.3
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|+|||+|..|+-+|..|++. |.+|+|+|+++
T Consensus 174 ~vvVIGgG~ig~E~A~~l~~~-G~~Vtlv~~~~ 205 (466)
T PRK07818 174 SIVIAGAGAIGMEFAYVLKNY-GVDVTIVEFLD 205 (466)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCeEEEEecCC
Confidence 899999999999999999999 99999999873
No 285
>KOG0404|consensus
Probab=97.14 E-value=0.0018 Score=67.18 Aligned_cols=64 Identities=16% Similarity=0.248 Sum_probs=51.5
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHH
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLL 704 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl 704 (720)
.+.+++. +..+++++.++.+.+..-+ ++.+.|+++++. .|++..+..+ .++.+-|.-.+..+|.
T Consensus 197 ~Mq~ra~-~npnI~v~~nt~~~ea~gd-~~~l~~l~ikn~~tge~~dl~v~-GlFf~IGH~Pat~~l~ 261 (322)
T KOG0404|consen 197 IMQQRAE-KNPNIEVLYNTVAVEALGD-GKLLNGLRIKNVKTGEETDLPVS-GLFFAIGHSPATKFLK 261 (322)
T ss_pred HHHHHHh-cCCCeEEEechhhhhhccC-cccccceEEEecccCcccccccc-eeEEEecCCchhhHhc
Confidence 4566666 6779999999999999877 778889998876 5777788887 5999999877777665
No 286
>PTZ00449 104 kDa microneme/rhoptry antigen; Provisional
Probab=97.09 E-value=0.0026 Score=72.03 Aligned_cols=94 Identities=28% Similarity=0.362 Sum_probs=53.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccC
Q psy14408 133 PNSPFNPYNPSSVFNPKNIDSVFNPRNPDSPYYNQYQFLYSPLSPYNPRSLFSSQNPLSPLSPLNANSPYNPRNQISYYN 212 (720)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (720)
++.|.-|-.|..|-.|++|-.|-.|++|-.|+ +|-||.-|-.+-.+.+|--|-+|.++-+|.+|+.+-|+..
T Consensus 576 SK~Pe~PK~Pk~PKdPksPK~PK~Prspq~P~--------~PkSPk~Pe~~d~PkSPK~PespksPKsP~sPqrP~SPkR 647 (943)
T PTZ00449 576 SKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPT--------RPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPER 647 (943)
T ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCcccccCCCCCCcccccCCCCCCCCCCCCCCCCC
Confidence 34555555555555555555555555555555 5555555555555555555555566666666666666666
Q ss_pred CCCCCCCCCCCCCCCCCCCCCc
Q psy14408 213 IENPKSPYNIHNPESPLYSDSP 234 (720)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~ 234 (720)
+++|+.|-++-.|.||----+|
T Consensus 648 PEsPKiPesPK~PkSPKpP~dP 669 (943)
T PTZ00449 648 PEGPKIIKSPKPPKSPKPPFDP 669 (943)
T ss_pred CCCCCCCCCCCCCCCCCCCCCC
Confidence 6666666666655555544444
No 287
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.08 E-value=0.0033 Score=71.09 Aligned_cols=32 Identities=19% Similarity=0.450 Sum_probs=30.4
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|+|||+|..|+-+|..|++. |.+|+|+|+++
T Consensus 168 ~vvIIGgG~~g~E~A~~l~~~-g~~Vtli~~~~ 199 (463)
T TIGR02053 168 SLAVIGGGAIGVELAQAFARL-GSEVTILQRSD 199 (463)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCC
Confidence 899999999999999999999 99999999873
No 288
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.06 E-value=0.0046 Score=70.21 Aligned_cols=32 Identities=28% Similarity=0.518 Sum_probs=30.5
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|+|||||.+|+-+|..|++. |.+|+|||++.
T Consensus 182 ~vvIIGgG~~G~E~A~~l~~~-g~~Vtli~~~~ 213 (472)
T PRK05976 182 SLVIVGGGVIGLEWASMLADF-GVEVTVVEAAD 213 (472)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCeEEEEEecC
Confidence 899999999999999999999 99999999873
No 289
>KOG1276|consensus
Probab=97.01 E-value=0.0007 Score=75.55 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=37.0
Q ss_pred cccCCCcccEEEECCcHHHHHHHHHHHhcCCCc--EEEEccCCCCCCC
Q psy14408 427 YVKSGDCFDIIIVGASAAGCVLANRLSEVSSLK--VLLIEAGGDTPIH 472 (720)
Q Consensus 427 ~I~~d~eyDVVIIGSGiAGLvAA~~LAea~G~K--VLVLEKG~~~~~s 472 (720)
.++.....+|+|||||++||++|++|+++ +-+ |+|+|+.++.++.
T Consensus 5 ~~~~~~~~~vaVvGGGiSGL~aay~L~r~-~p~~~i~l~Ea~~RvGGw 51 (491)
T KOG1276|consen 5 QIEAVSGMTVAVVGGGISGLCAAYYLARL-GPDVTITLFEASPRVGGW 51 (491)
T ss_pred cccceecceEEEECCchhHHHHHHHHHhc-CCCceEEEEecCCcccce
Confidence 35555667999999999999999999998 555 5669999887655
No 290
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.00 E-value=0.0051 Score=70.00 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=30.3
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|+|||+|..|+-+|..|++. |.+|+|+|+++
T Consensus 185 ~vvVvGgG~~g~E~A~~l~~~-g~~Vtli~~~~ 216 (475)
T PRK06327 185 KLAVIGAGVIGLELGSVWRRL-GAEVTILEALP 216 (475)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCC
Confidence 899999999999999999999 99999999873
No 291
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.00 E-value=0.00075 Score=80.00 Aligned_cols=37 Identities=24% Similarity=0.271 Sum_probs=33.7
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 470 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~ 470 (720)
..+|+|||||.+|+++|+.|++. |++|+|+|+....+
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~-G~~Vtv~e~~~~~G 229 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRK-GHDVTIFDANEQAG 229 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCC
Confidence 35999999999999999999999 99999999986653
No 292
>KOG4716|consensus
Probab=96.99 E-value=0.00052 Score=74.57 Aligned_cols=37 Identities=22% Similarity=0.361 Sum_probs=33.5
Q ss_pred cCCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 429 KSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 429 ~~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
...-+||.||||||.+||+||.++|.. |.||++||--
T Consensus 15 ~~sydyDLIviGgGSgGLacaKeAa~~-G~kV~~lDfV 51 (503)
T KOG4716|consen 15 FSSYDYDLIVIGGGSGGLACAKEAADL-GAKVACLDFV 51 (503)
T ss_pred cccCCccEEEEcCCcchhhHHHHHHhc-CCcEEEEeec
Confidence 345679999999999999999999999 9999999964
No 293
>PLN03000 amine oxidase
Probab=96.99 E-value=0.00077 Score=81.72 Aligned_cols=40 Identities=25% Similarity=0.320 Sum_probs=36.1
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH 472 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s 472 (720)
...||||||||++||+||..|++. |++|+|||+....++.
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~-G~~V~VlE~~~riGGR 222 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRF-GFKVTVLEGRKRPGGR 222 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHC-CCcEEEEEccCcCCCC
Confidence 356999999999999999999999 9999999998877654
No 294
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.95 E-value=0.0011 Score=76.26 Aligned_cols=38 Identities=24% Similarity=0.233 Sum_probs=33.5
Q ss_pred cccEEEECCcHHHHHHHHHHHh--cCCCcEEEEccCCCCCC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSE--VSSLKVLLIEAGGDTPI 471 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAe--a~G~KVLVLEKG~~~~~ 471 (720)
..+|+|||||++|+.||..|++ . |++|+|+||...+.+
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~-g~~Vtv~E~~p~pgG 65 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHD-GARVDIIERLPTPFG 65 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCC-CCeEEEEecCCCCcc
Confidence 4589999999999999999997 5 999999999876543
No 295
>PRK07846 mycothione reductase; Reviewed
Probab=96.94 E-value=0.00084 Score=76.00 Aligned_cols=62 Identities=23% Similarity=0.293 Sum_probs=41.0
Q ss_pred HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHH--HHcCCC
Q psy14408 639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL--LLSGIG 709 (720)
Q Consensus 639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LL--l~SGIg 709 (720)
.+.... +.|++++++++|++|..+ ++. +.+...+|+ ++.++ .||+|+|......+| ...|+.
T Consensus 212 ~l~~l~--~~~v~i~~~~~v~~i~~~-~~~---v~v~~~~g~--~i~~D-~vl~a~G~~pn~~~l~~~~~gl~ 275 (451)
T PRK07846 212 RFTELA--SKRWDVRLGRNVVGVSQD-GSG---VTLRLDDGS--TVEAD-VLLVATGRVPNGDLLDAAAAGVD 275 (451)
T ss_pred HHHHHH--hcCeEEEeCCEEEEEEEc-CCE---EEEEECCCc--EeecC-EEEEEECCccCccccCchhcCce
Confidence 344444 568999999999999865 432 333322353 68898 599999987666653 445553
No 296
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=96.91 E-value=0.015 Score=60.64 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=29.8
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
.|+|||+|..|+-+|..|++. |.+|++++++
T Consensus 143 ~v~ViG~G~~~~e~a~~l~~~-~~~V~~v~~~ 173 (300)
T TIGR01292 143 EVAVVGGGDSAIEEALYLTRI-AKKVTLVHRR 173 (300)
T ss_pred EEEEECCChHHHHHHHHHHhh-cCEEEEEEeC
Confidence 899999999999999999998 9999999987
No 297
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.91 E-value=0.00082 Score=81.07 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=31.5
Q ss_pred cEEEECCcHHHHHHHHHHHhc-CCCcEEEEccCCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDT 469 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea-~G~KVLVLEKG~~~ 469 (720)
+|+|||||++||++|+.|++. .|++|+||||....
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~ 37 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY 37 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 799999999999999999996 37999999998653
No 298
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.90 E-value=0.001 Score=72.57 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=33.2
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 470 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~ 470 (720)
.+|||||+|++|+.+|..|++. |++|+|+|+....+
T Consensus 19 ~~VvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~~g 54 (352)
T PRK12770 19 KKVAIIGAGPAGLAAAGYLACL-GYEVHVYDKLPEPG 54 (352)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCCC
Confidence 3999999999999999999999 99999999987654
No 299
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.81 E-value=0.0012 Score=74.83 Aligned_cols=62 Identities=23% Similarity=0.321 Sum_probs=40.2
Q ss_pred HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHH--HHHcCCC
Q psy14408 639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQL--LLLSGIG 709 (720)
Q Consensus 639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~L--Ll~SGIg 709 (720)
.+.... +.|+++++++.|++|..+ ++.+ .|++ .+|+ ++.++ .||+|+|......+ +...|+.
T Consensus 215 ~l~~~~--~~gI~i~~~~~V~~i~~~-~~~v-~v~~--~~g~--~i~~D-~vl~a~G~~pn~~~l~~~~~gl~ 278 (452)
T TIGR03452 215 RFTEIA--KKKWDIRLGRNVTAVEQD-GDGV-TLTL--DDGS--TVTAD-VLLVATGRVPNGDLLDAEAAGVE 278 (452)
T ss_pred HHHHHH--hcCCEEEeCCEEEEEEEc-CCeE-EEEE--cCCC--EEEcC-EEEEeeccCcCCCCcCchhcCee
Confidence 344444 468999999999999876 4332 2333 2353 68898 59999997655554 3344543
No 300
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.80 E-value=0.0012 Score=80.86 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=31.7
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
...|+|||||++|++||++|+++ |++|+|+|+..
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~-Gh~Vtv~E~~~ 416 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRS-GHNVTAIDGLK 416 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhC-CCeEEEEcccc
Confidence 45899999999999999999999 99999999864
No 301
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=96.80 E-value=0.014 Score=65.12 Aligned_cols=54 Identities=20% Similarity=0.252 Sum_probs=40.5
Q ss_pred CCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408 647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 709 (720)
Q Consensus 647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg 709 (720)
+.|++++.++.|++|..+ +++ +.+. +|+ ++.++ .||+|+|......+|..+|+.
T Consensus 191 ~~gV~v~~~~~v~~i~~~--~~~--v~~~--~g~--~i~~D-~vi~a~G~~p~~~~l~~~gl~ 244 (427)
T TIGR03385 191 KHEINLRLNEEVDSIEGE--ERV--KVFT--SGG--VYQAD-MVILATGIKPNSELAKDSGLK 244 (427)
T ss_pred HcCCEEEeCCEEEEEecC--CCE--EEEc--CCC--EEEeC-EEEECCCccCCHHHHHhcCcc
Confidence 669999999999999754 332 3333 354 68898 599999988777888888765
No 302
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.76 E-value=0.0015 Score=74.70 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=33.3
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 470 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~ 470 (720)
.+|+|||||.+|+.||..|++. |++|+|+|+....+
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~-g~~V~v~e~~~~~g 179 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRA-GHTVTVFEREDRCG 179 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCCCC
Confidence 5999999999999999999999 99999999987553
No 303
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=96.72 E-value=0.011 Score=67.04 Aligned_cols=32 Identities=31% Similarity=0.583 Sum_probs=30.2
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
+|+|||+|..|+-+|..|++. |.+|+|+|+++
T Consensus 172 ~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~ 203 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSRL-GTKVTIVEMAP 203 (458)
T ss_pred cEEEECCCHHHHHHHHHHHHc-CCeEEEEecCC
Confidence 899999999999999999998 99999999873
No 304
>PLN02976 amine oxidase
Probab=96.72 E-value=0.0016 Score=82.00 Aligned_cols=40 Identities=33% Similarity=0.375 Sum_probs=35.4
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH 472 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s 472 (720)
...||+|||||++|+++|++|+++ |++|+|||+....++.
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~-G~~V~VlEa~~~vGGr 731 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQ-GFSVTVLEARSRIGGR 731 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHC-CCcEEEEeeccCCCCc
Confidence 347999999999999999999999 9999999998666443
No 305
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.70 E-value=0.012 Score=66.95 Aligned_cols=32 Identities=19% Similarity=0.354 Sum_probs=30.2
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|+|||+|..|+-+|..|++. |.+|+|+|++.
T Consensus 176 ~vvIIGgG~ig~E~A~~l~~~-G~~Vtlie~~~ 207 (466)
T PRK06115 176 HLVVIGAGVIGLELGSVWRRL-GAQVTVVEYLD 207 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCC
Confidence 799999999999999999999 99999999873
No 306
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=96.69 E-value=0.0097 Score=67.41 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=30.5
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|+|||||..|+-+|..|++. |.+|+|||+++
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~ 199 (450)
T TIGR01421 168 RVVIVGAGYIAVELAGVLHGL-GSETHLVIRHE 199 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCcEEEEecCC
Confidence 899999999999999999999 99999999873
No 307
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=96.68 E-value=0.011 Score=66.63 Aligned_cols=32 Identities=34% Similarity=0.594 Sum_probs=30.4
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|+|||+|..|+-+|..|++. |.+|+|||+++
T Consensus 177 ~v~IiGgG~~g~E~A~~l~~~-g~~Vtli~~~~ 208 (461)
T PRK05249 177 SLIIYGAGVIGCEYASIFAAL-GVKVTLINTRD 208 (461)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCC
Confidence 899999999999999999999 99999999873
No 308
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.61 E-value=0.014 Score=66.41 Aligned_cols=32 Identities=13% Similarity=0.257 Sum_probs=30.5
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|+|||+|..|+-+|..|++. |.+|+|||+++
T Consensus 176 ~vvIiGgG~iG~E~A~~l~~~-G~~Vtlv~~~~ 207 (471)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHRL-GSEVDVVEMFD 207 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCCEEEEecCC
Confidence 899999999999999999999 99999999874
No 309
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.61 E-value=0.011 Score=65.82 Aligned_cols=57 Identities=12% Similarity=0.088 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcch
Q psy14408 634 SAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 699 (720)
Q Consensus 634 ~aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~S 699 (720)
......|..++ ++.||+|+++++|++| + +++ .+|++.. ++ ..++|+ .||||+|+...
T Consensus 86 ~sVv~~L~~~l-~~~gV~i~~~~~V~~i--~-~~~-~~v~~~~--~~-~~~~a~-~vIlAtGG~s~ 142 (376)
T TIGR03862 86 APLLRAWLKRL-AEQGVQFHTRHRWIGW--Q-GGT-LRFETPD--GQ-STIEAD-AVVLALGGASW 142 (376)
T ss_pred HHHHHHHHHHH-HHCCCEEEeCCEEEEE--e-CCc-EEEEECC--Cc-eEEecC-EEEEcCCCccc
Confidence 34444555555 5899999999999999 3 332 4455432 22 368998 59999998653
No 310
>PRK06116 glutathione reductase; Validated
Probab=96.60 E-value=0.012 Score=66.22 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=30.3
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|+|||+|..|+-+|..|++. |.+|+|++++.
T Consensus 169 ~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~ 200 (450)
T PRK06116 169 RVAVVGAGYIAVEFAGVLNGL-GSETHLFVRGD 200 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCC
Confidence 899999999999999999999 99999999873
No 311
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.53 E-value=0.0026 Score=73.04 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=32.1
Q ss_pred ccEEEECCcHHHHHHHHHHH-hcCCCcEEEEccCCCCCC
Q psy14408 434 FDIIIVGASAAGCVLANRLS-EVSSLKVLLIEAGGDTPI 471 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LA-ea~G~KVLVLEKG~~~~~ 471 (720)
.-|+|||||++|+.||.+|+ +. |++|+|+||...+.+
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~-g~~VtlfEk~p~pgG 77 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHE-RVKVDIFEKLPNPYG 77 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhc-CCeEEEEecCCCCcc
Confidence 37999999999999999876 56 999999999877643
No 312
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=96.50 E-value=0.013 Score=66.51 Aligned_cols=32 Identities=28% Similarity=0.566 Sum_probs=30.2
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|+|||+|..|+-+|..|++. |.+|+|||++.
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~~-g~~Vtli~~~~ 210 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTEL-GVKVTLVSSRD 210 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCC
Confidence 799999999999999999999 99999999873
No 313
>KOG1439|consensus
Probab=96.44 E-value=0.023 Score=63.32 Aligned_cols=41 Identities=27% Similarity=0.423 Sum_probs=37.1
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408 431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH 472 (720)
Q Consensus 431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s 472 (720)
+++|||||+|-|..=+..+..|+.+ |.|||.+||++..++.
T Consensus 2 deeyDvivlGTgl~ecilS~~Ls~~-gkkVLhiDrN~yYG~~ 42 (440)
T KOG1439|consen 2 DEEYDVIVLGTGLTECILSGALSVD-GKKVLHIDRNDYYGGE 42 (440)
T ss_pred CCceeEEEEcCCchhheeeeeeeec-CcEEEEEeCCCCCCcc
Confidence 4569999999999999999999999 9999999999887544
No 314
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.38 E-value=0.023 Score=64.09 Aligned_cols=32 Identities=28% Similarity=0.539 Sum_probs=30.4
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|+|||+|..|+-+|..|++. |.+|+|+|+++
T Consensus 171 ~v~VIGgG~~g~E~A~~l~~~-g~~Vtli~~~~ 202 (460)
T PRK06292 171 SLAVIGGGVIGLELGQALSRL-GVKVTVFERGD 202 (460)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCcEEEEecCC
Confidence 899999999999999999999 99999999873
No 315
>KOG3923|consensus
Probab=96.36 E-value=0.016 Score=62.42 Aligned_cols=32 Identities=28% Similarity=0.307 Sum_probs=25.0
Q ss_pred ccEEEECCcHHHHHHHHHHHhc------CCCcEEEEcc
Q psy14408 434 FDIIIVGASAAGCVLANRLSEV------SSLKVLLIEA 465 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea------~G~KVLVLEK 465 (720)
-+|+|||+|+.||++|+.+.+. +-.+|.|++-
T Consensus 4 ~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~D 41 (342)
T KOG3923|consen 4 PRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISD 41 (342)
T ss_pred ccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecC
Confidence 4899999999999999777764 1256777763
No 316
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=96.36 E-value=0.02 Score=62.60 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=34.8
Q ss_pred cCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHH
Q psy14408 646 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQ 701 (720)
Q Consensus 646 e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~ 701 (720)
++.|++|+++++|++|..+ +++++.+... +|+ ++.|+ .||+|+.......
T Consensus 208 ~~~g~~i~~~~~V~~i~~~-~~~~~~~~~~--~g~--~~~~d-~vi~a~p~~~~~~ 257 (419)
T TIGR03467 208 DSRGGEVRLGTRVRSIEAN-AGGIRALVLS--GGE--TLPAD-AVVLAVPPRHAAS 257 (419)
T ss_pred HHcCCEEEcCCeeeEEEEc-CCcceEEEec--CCc--cccCC-EEEEcCCHHHHHH
Confidence 3679999999999999988 5555433222 343 68897 5999877644433
No 317
>KOG3851|consensus
Probab=96.33 E-value=0.044 Score=59.76 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=30.8
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhcCC-CcEEEEccC
Q psy14408 431 GDCFDIIIVGASAAGCVLANRLSEVSS-LKVLLIEAG 466 (720)
Q Consensus 431 d~eyDVVIIGSGiAGLvAA~~LAea~G-~KVLVLEKG 466 (720)
...+.|+|||||.+|+++|..+.++.| -+|.|||-.
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~ 73 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPA 73 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecch
Confidence 357899999999999999999998745 479999954
No 318
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.31 E-value=0.024 Score=63.70 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=30.3
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|+|||+|..|+-+|..|++. |.+|+|||++.
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~-g~~Vtli~~~~ 191 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANF-GSKVTILEAAS 191 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 899999999999999999999 99999999873
No 319
>PRK14727 putative mercuric reductase; Provisional
Probab=96.28 E-value=0.036 Score=63.33 Aligned_cols=31 Identities=13% Similarity=0.380 Sum_probs=29.4
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
.|+|||+|..|+-+|..|++. |.+|+||++.
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~~-G~~Vtlv~~~ 220 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYARL-GSRVTILARS 220 (479)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCEEEEEEcC
Confidence 799999999999999999998 9999999874
No 320
>PLN02507 glutathione reductase
Probab=96.26 E-value=0.026 Score=65.03 Aligned_cols=32 Identities=13% Similarity=0.107 Sum_probs=30.2
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|+|||+|..|+-+|..|++. |.+|+|+|++.
T Consensus 205 ~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~ 236 (499)
T PLN02507 205 RAVVLGGGYIAVEFASIWRGM-GATVDLFFRKE 236 (499)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCeEEEEEecC
Confidence 799999999999999999998 99999999873
No 321
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=95.94 E-value=0.0064 Score=69.41 Aligned_cols=38 Identities=24% Similarity=0.220 Sum_probs=34.3
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH 472 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s 472 (720)
-.|.|||||++||+||..|+++ |+.|+|.|+....++.
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~-G~~Vtv~e~~~~~GGl 161 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRA-GHDVTVFERVALDGGL 161 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhC-CCeEEEeCCcCCCcee
Confidence 4999999999999999999999 9999999998666443
No 322
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=95.92 E-value=0.04 Score=63.35 Aligned_cols=56 Identities=18% Similarity=0.376 Sum_probs=38.3
Q ss_pred CCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHH--HHcCC
Q psy14408 647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL--LLSGI 708 (720)
Q Consensus 647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LL--l~SGI 708 (720)
+.|+++++++.|++|..+ ++....|++.+ |+ ++.++ .||+|+|......+| .+.|+
T Consensus 243 ~~GI~i~~~~~v~~i~~~-~~~~~~v~~~~--g~--~i~~D-~vl~a~G~~Pn~~~l~l~~~gl 300 (486)
T TIGR01423 243 ANGINIMTNENPAKVTLN-ADGSKHVTFES--GK--TLDVD-VVMMAIGRVPRTQTLQLDKVGV 300 (486)
T ss_pred HcCCEEEcCCEEEEEEEc-CCceEEEEEcC--CC--EEEcC-EEEEeeCCCcCcccCCchhhCc
Confidence 679999999999999865 33333444433 53 68898 599999976555543 34554
No 323
>KOG0399|consensus
Probab=95.44 E-value=0.013 Score=71.65 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=36.1
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH 472 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s 472 (720)
.-..|.|||||.+||+||-+|-+. ||.|+|.||.++.++-
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~-gh~v~vyer~dr~ggl 1823 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKA-GHTVTVYERSDRVGGL 1823 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhc-CcEEEEEEecCCcCce
Confidence 346899999999999999999999 9999999999877654
No 324
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=95.39 E-value=0.016 Score=62.69 Aligned_cols=38 Identities=32% Similarity=0.339 Sum_probs=34.7
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH 472 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s 472 (720)
-+|+|||+|..|+-+|..|+++ |++|+|+|+.....+.
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~-G~~v~l~e~~~~~~~~ 174 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKR-GKKVTLIEAADRLGGQ 174 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CCeEEEEEcccccchh
Confidence 4999999999999999999999 9999999999776443
No 325
>KOG2403|consensus
Probab=95.38 E-value=0.02 Score=65.92 Aligned_cols=35 Identities=31% Similarity=0.434 Sum_probs=32.0
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
+..||.+|||+|-+|+-+|..|++. |.+|.++-|-
T Consensus 53 ~~~~da~vvgaggAGlr~~~~lae~-g~~~a~itkl 87 (642)
T KOG2403|consen 53 DHTYDAVVVGAGGAGLRAARGLAEL-GEKTAVITKL 87 (642)
T ss_pred eeeceeEEEeccchhhhhhhhhhhc-CceEEEEecc
Confidence 3458999999999999999999999 9999999875
No 326
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=95.37 E-value=0.02 Score=62.89 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=30.1
Q ss_pred ccEEEECCcHHHHHHHHHHHhc-CCCcEEEEccCCC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD 468 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea-~G~KVLVLEKG~~ 468 (720)
.||||||||++|+.+|..|.+. ++.+|+||++...
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG 38 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence 3999999999999999999874 3578999998654
No 327
>KOG3855|consensus
Probab=95.37 E-value=0.014 Score=65.27 Aligned_cols=39 Identities=36% Similarity=0.590 Sum_probs=32.9
Q ss_pred CCCcccEEEECCcHHHHHHHHHHHhc---CCCcEEEEccCCC
Q psy14408 430 SGDCFDIIIVGASAAGCVLANRLSEV---SSLKVLLIEAGGD 468 (720)
Q Consensus 430 ~d~eyDVVIIGSGiAGLvAA~~LAea---~G~KVLVLEKG~~ 468 (720)
....+||||||||..|++.|..|... ..+||+|||.+.-
T Consensus 33 ~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 33 DTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred CcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 34478999999999999999999864 2689999999843
No 328
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.11 E-value=0.96 Score=49.89 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=29.2
Q ss_pred CeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccC
Q psy14408 649 NLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAG 695 (720)
Q Consensus 649 GVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAG 695 (720)
-++|+.+++|+++..+++|++ -+.+.+. .|+..++.++ .||+|||
T Consensus 293 ~~~l~~~~~v~~~~~~~~~~~-~l~~~~~~~~~~~~~~~D-~VilATG 338 (341)
T PF13434_consen 293 RLRLLPNTEVTSAEQDGDGGV-RLTLRHRQTGEEETLEVD-AVILATG 338 (341)
T ss_dssp -SEEETTEEEEEEEEES-SSE-EEEEEETTT--EEEEEES-EEEE---
T ss_pred CeEEeCCCEEEEEEECCCCEE-EEEEEECCCCCeEEEecC-EEEEcCC
Confidence 599999999999998832443 3445543 5677889998 5999999
No 329
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=95.05 E-value=0.019 Score=63.58 Aligned_cols=36 Identities=19% Similarity=0.084 Sum_probs=29.9
Q ss_pred ccEEEECCcHHHHHHHHHHHhc---CCCcEEEEccCCCC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEV---SSLKVLLIEAGGDT 469 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea---~G~KVLVLEKG~~~ 469 (720)
--+-|||+|++||++|..|.|. .|.++-+||.-...
T Consensus 23 KsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~ 61 (587)
T COG4716 23 KSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLA 61 (587)
T ss_pred ceeEEEccchHhhhheeEEEeccccCCceeEeeecCccc
Confidence 4788999999999999999885 26799999965443
No 330
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.02 E-value=0.16 Score=56.97 Aligned_cols=38 Identities=34% Similarity=0.437 Sum_probs=33.3
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408 431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468 (720)
Q Consensus 431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~ 468 (720)
...+|+|.||-|+.-|+.|..|.++.+++++.|||-..
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~ 40 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPD 40 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCC
Confidence 34679999999999999999999974689999999743
No 331
>KOG1336|consensus
Probab=94.83 E-value=0.14 Score=58.34 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=45.7
Q ss_pred cCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHH
Q psy14408 646 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLL 705 (720)
Q Consensus 646 e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~ 705 (720)
++.|++|+.++.|.++....+|+++-|.+.+ |+ ++.|+ -||+..|+-....++..
T Consensus 266 e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~d--g~--~l~ad-lvv~GiG~~p~t~~~~~ 320 (478)
T KOG1336|consen 266 ENKGVKFYLGTVVSSLEGNSDGEVSEVKLKD--GK--TLEAD-LVVVGIGIKPNTSFLEK 320 (478)
T ss_pred HhcCeEEEEecceeecccCCCCcEEEEEecc--CC--EeccC-eEEEeeccccccccccc
Confidence 4789999999999999887568999998887 64 78998 59999998777666664
No 332
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.72 E-value=0.039 Score=52.53 Aligned_cols=31 Identities=35% Similarity=0.578 Sum_probs=29.3
Q ss_pred EEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 436 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 436 VVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
|+|||+|..|+..|.+|+++ |++|.++.|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-GHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-TCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC-CCceEEEEccc
Confidence 68999999999999999998 99999999983
No 333
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.72 E-value=0.035 Score=54.11 Aligned_cols=30 Identities=30% Similarity=0.371 Sum_probs=29.0
Q ss_pred EEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 436 IIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 436 VVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
|.|||||..|.++|..|+++ |++|.|..+.
T Consensus 2 I~ViGaG~~G~AlA~~la~~-g~~V~l~~~~ 31 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADN-GHEVTLWGRD 31 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHC-TEEEEEETSC
T ss_pred EEEECcCHHHHHHHHHHHHc-CCEEEEEecc
Confidence 78999999999999999999 9999999986
No 334
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=94.68 E-value=0.028 Score=60.18 Aligned_cols=29 Identities=24% Similarity=0.226 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408 443 AAGCVLANRLSEVSSLKVLLIEAGGDTPIH 472 (720)
Q Consensus 443 iAGLvAA~~LAea~G~KVLVLEKG~~~~~s 472 (720)
++||+||++|+++ |++|+||||.++.++.
T Consensus 1 iaGL~aA~~L~~~-G~~v~vlEa~~r~GGr 29 (450)
T PF01593_consen 1 IAGLAAAYYLAKA-GYDVTVLEASDRVGGR 29 (450)
T ss_dssp HHHHHHHHHHHHT-TTEEEEEESSSSSBTT
T ss_pred ChHHHHHHHHHhC-CCCEEEEEcCCCCCcc
Confidence 6899999999999 9999999999887655
No 335
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.44 E-value=0.047 Score=54.67 Aligned_cols=30 Identities=20% Similarity=0.387 Sum_probs=27.1
Q ss_pred EEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 436 IIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 436 VVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
|.|||+|..|...|..+|.+ |++|+|+|+.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~ 31 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARA-GYEVTLYDRS 31 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEE-SS
T ss_pred EEEEcCCHHHHHHHHHHHhC-CCcEEEEECC
Confidence 78999999999999999999 9999999986
No 336
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=94.32 E-value=0.034 Score=60.79 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=30.7
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~ 468 (720)
--|.|||||.+|.-||+++|++ |++|.|.|-.+.
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~-Gv~V~L~EMRp~ 37 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKR-GVPVILYEMRPV 37 (439)
T ss_pred CceEEEcccccccHHHHHHHHc-CCcEEEEEcccc
Confidence 3689999999999999999999 999999996543
No 337
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=94.30 E-value=0.048 Score=60.50 Aligned_cols=34 Identities=32% Similarity=0.444 Sum_probs=31.9
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 469 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~ 469 (720)
.|||||+|..|+-+|..|++. |.+|+|||++...
T Consensus 146 ~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~ 179 (396)
T PRK09754 146 SVVIVGAGTIGLELAASATQR-RCKVTVIELAATV 179 (396)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCcc
Confidence 799999999999999999999 9999999998654
No 338
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=94.15 E-value=2.8 Score=45.42 Aligned_cols=63 Identities=21% Similarity=0.139 Sum_probs=42.7
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEE--EEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcC
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGV--EYVNSKGETVRVTANKEVILTAGAIANAQLLLLSG 707 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV--~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SG 707 (720)
..+.+.. ++.|++++.++.|.+|... ++++.+. ...+ + ..++++ .|+++.|......++...+
T Consensus 182 ~~~~~~l-~~~gi~~~~~~~~~~i~~~-~~~~~~~~~~~~~--~--~~~~~d-~~~~~~g~~p~~~l~~~~~ 246 (415)
T COG0446 182 EELAELL-EKYGVELLLGTKVVGVEGK-GNTLVVERVVGID--G--EEIKAD-LVIIGPGERPNVVLANDAL 246 (415)
T ss_pred HHHHHHH-HHCCcEEEeCCceEEEEcc-cCcceeeEEEEeC--C--cEEEee-EEEEeecccccHHHHhhCc
Confidence 4455555 5789999999999999976 5544442 2222 4 368887 5888888765555555554
No 339
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.13 E-value=0.046 Score=55.13 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=26.1
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
-|.|||.|..||.+|..||++ |++|+.+|...
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~-G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEK-GHQVIGVDIDE 33 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHT-TSEEEEE-S-H
T ss_pred EEEEECCCcchHHHHHHHHhC-CCEEEEEeCCh
Confidence 488999999999999999999 99999999863
No 340
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=93.96 E-value=0.29 Score=58.57 Aligned_cols=64 Identities=19% Similarity=0.360 Sum_probs=53.8
Q ss_pred HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 709 (720)
Q Consensus 638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg 709 (720)
.+|+.+. ++.|++|+++..+++|.. .+++.+|+..| |. .+.|+ -||+|+|......+...+||.
T Consensus 191 ~lL~~~l-e~~Gi~~~l~~~t~ei~g--~~~~~~vr~~D--G~--~i~ad-~VV~a~GIrPn~ela~~aGla 254 (793)
T COG1251 191 RLLRRKL-EDLGIKVLLEKNTEEIVG--EDKVEGVRFAD--GT--EIPAD-LVVMAVGIRPNDELAKEAGLA 254 (793)
T ss_pred HHHHHHH-Hhhcceeecccchhhhhc--CcceeeEeecC--CC--cccce-eEEEecccccccHhHHhcCcC
Confidence 5677777 789999999999999886 47788888877 64 67887 699999998888888888886
No 341
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=93.81 E-value=0.068 Score=60.25 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=32.0
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 469 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~ 469 (720)
+|+|||+|.+|+-+|..|++. |.+|+|+|++...
T Consensus 172 ~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~ 205 (461)
T TIGR01350 172 SLVIIGGGVIGIEFASIFASL-GSKVTVIEMLDRI 205 (461)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCCCC
Confidence 899999999999999999999 9999999998654
No 342
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=93.68 E-value=0.074 Score=59.76 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=31.9
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 469 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~ 469 (720)
.|+|||+|.+|+-+|..|++. |.+|+|+|++...
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~ 192 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKL-GSKVTVLDAASTI 192 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCcc
Confidence 799999999999999999998 9999999998655
No 343
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=93.49 E-value=0.23 Score=61.45 Aligned_cols=57 Identities=14% Similarity=0.176 Sum_probs=43.9
Q ss_pred HHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-------------CC-------------cEEEEEcCcEEEEc
Q psy14408 640 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-------------KG-------------ETVRVTANKEVILT 693 (720)
Q Consensus 640 L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-------------~G-------------~e~tIkAkK~VVVA 693 (720)
+..|. +.|++|++.+...+|+.+++|+++|++++.. .+ .+++|.|+ .||+|
T Consensus 647 v~~A~--eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~vi~A 723 (1028)
T PRK06567 647 LIYAL--ALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTK-TVIMA 723 (1028)
T ss_pred HHHHH--HcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCC-EEEEe
Confidence 44455 7899999999999999875689999988621 11 45789998 69999
Q ss_pred cCCcch
Q psy14408 694 AGAIAN 699 (720)
Q Consensus 694 AGa~~S 699 (720)
+|.-..
T Consensus 724 ~G~~~~ 729 (1028)
T PRK06567 724 IGIENN 729 (1028)
T ss_pred cccCCc
Confidence 996443
No 344
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.46 E-value=0.08 Score=60.29 Aligned_cols=32 Identities=22% Similarity=0.523 Sum_probs=29.9
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|+|||+|.+|+.+|..|+++ |++|+|+|+..
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~-G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLEL-GARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 799999999999999999998 99999999764
No 345
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.30 E-value=0.087 Score=56.79 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=30.3
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|.|||+|..|...|..|+++ |++|+++|+..
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~-G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARA-GHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHC-CCeeEEEeCCH
Confidence 699999999999999999999 99999999874
No 346
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.19 E-value=0.094 Score=59.25 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=30.3
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~ 468 (720)
-|+|||.|.+|+++|..|+++ |++|++.|+...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~-G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ-GWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC-CCEEEEECCCCc
Confidence 389999999999999999999 999999998654
No 347
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=0.11 Score=57.75 Aligned_cols=39 Identities=26% Similarity=0.306 Sum_probs=35.9
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH 472 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s 472 (720)
+|||||+|-|+.-++.+..|+.+ |.+|+++||++..+..
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~-~k~VlhiD~Nd~YG~~ 44 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWD-GKNVLHIDKNDYYGST 44 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhc-CceEEEEeCCCccCcc
Confidence 69999999999999999999999 9999999999877443
No 348
>PRK06370 mercuric reductase; Validated
Probab=93.07 E-value=0.11 Score=59.05 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=32.1
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 469 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~ 469 (720)
.|+|||+|..|+-+|..|++. |.+|+|+|++...
T Consensus 173 ~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~~~ 206 (463)
T PRK06370 173 HLVIIGGGYIGLEFAQMFRRF-GSEVTVIERGPRL 206 (463)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCCC
Confidence 899999999999999999999 9999999998765
No 349
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.00 E-value=0.1 Score=54.10 Aligned_cols=33 Identities=39% Similarity=0.579 Sum_probs=30.8
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~ 468 (720)
.+||||+|-.|...|..|++. |+.|+++|+...
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~-g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE-GHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC-CCceEEEEcCHH
Confidence 689999999999999999999 999999998743
No 350
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=92.99 E-value=0.091 Score=51.84 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=28.4
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
-.|+|||+|.+|.-+|..|++. |.+|+|+=|.+
T Consensus 168 k~V~VVG~G~SA~d~a~~l~~~-g~~V~~~~R~~ 200 (203)
T PF13738_consen 168 KRVVVVGGGNSAVDIAYALAKA-GKSVTLVTRSP 200 (203)
T ss_dssp SEEEEE--SHHHHHHHHHHTTT-CSEEEEEESS-
T ss_pred CcEEEEcChHHHHHHHHHHHhh-CCEEEEEecCC
Confidence 4899999999999999999999 99999998874
No 351
>PRK07846 mycothione reductase; Reviewed
Probab=92.95 E-value=0.11 Score=58.95 Aligned_cols=34 Identities=21% Similarity=0.437 Sum_probs=32.0
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 469 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~ 469 (720)
.|+|||||..|+-+|..|++. |.+|+|||++...
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~~~l 201 (451)
T PRK07846 168 SLVIVGGGFIAAEFAHVFSAL-GVRVTVVNRSGRL 201 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCcc
Confidence 899999999999999999998 9999999998654
No 352
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.78 E-value=0.12 Score=58.36 Aligned_cols=34 Identities=18% Similarity=0.365 Sum_probs=31.9
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 469 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~ 469 (720)
.|+|||+|..|+-+|..|++. |.+|+|+|++...
T Consensus 174 ~vvVvGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~ 207 (462)
T PRK06416 174 SLVVIGGGYIGVEFASAYASL-GAEVTIVEALPRI 207 (462)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCCc
Confidence 799999999999999999999 9999999998654
No 353
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.61 E-value=0.13 Score=54.76 Aligned_cols=32 Identities=16% Similarity=0.297 Sum_probs=29.8
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|.|||+|..|...|..|+++ |++|+++|+..
T Consensus 5 kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 599999999999999999999 99999999763
No 354
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.61 E-value=0.15 Score=58.22 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=30.5
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC--CCcEEEEccCCCCC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVS--SLKVLLIEAGGDTP 470 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~--G~KVLVLEKG~~~~ 470 (720)
++|+|||+|.+|+++|.+|.+.+ -.+|.|+|+....+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G 40 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFG 40 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccC
Confidence 58999999999999999999852 22399999876663
No 355
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.59 E-value=0.14 Score=54.67 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=29.8
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|.|||+|..|...|..|+++ |++|+++|+..
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS-GFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC-CCcEEEEeCCH
Confidence 489999999999999999999 99999999863
No 356
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=92.54 E-value=0.13 Score=58.10 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=31.8
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 469 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~ 469 (720)
.|+|||||..|+-+|..|++. |.+|+|+|++...
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~~l 183 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYER-GLHPTLIHRSDKI 183 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEeccccc
Confidence 799999999999999999999 9999999998654
No 357
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=92.40 E-value=0.14 Score=54.14 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=29.1
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
.|.|||+|..|...|..|+++ |++|++++|.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-GHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEECC
Confidence 489999999999999999999 9999999984
No 358
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.38 E-value=0.14 Score=55.27 Aligned_cols=32 Identities=34% Similarity=0.402 Sum_probs=30.3
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|.|||+|..|+..|.+|+++ |.+|+++.|+.
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~-G~~V~lv~r~~ 35 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARA-GLPVRLILRDR 35 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCCeEEEEech
Confidence 699999999999999999999 99999999973
No 359
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=92.28 E-value=0.15 Score=54.16 Aligned_cols=31 Identities=32% Similarity=0.438 Sum_probs=29.1
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
.|.|||+|..|+..|..|+++ |++|++++|+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-g~~V~~~~r~ 32 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-GRDVTFLVRP 32 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-CCceEEEecH
Confidence 489999999999999999999 9999999983
No 360
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.19 E-value=0.15 Score=57.38 Aligned_cols=33 Identities=30% Similarity=0.499 Sum_probs=30.8
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
-.|+|||+|..|+.+|..|+++ |++|+++|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~-G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKL-GAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 4799999999999999999999 99999999864
No 361
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=91.98 E-value=0.18 Score=57.71 Aligned_cols=34 Identities=26% Similarity=0.462 Sum_probs=32.5
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 469 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~ 469 (720)
.++|||||..|+-.|.-+++- |.+|+|||+++..
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~L-G~~VTiie~~~~i 208 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAAL-GSKVTVVERGDRI 208 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCC
Confidence 699999999999999999999 9999999999876
No 362
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=91.95 E-value=0.18 Score=57.25 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=31.8
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 469 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~ 469 (720)
.|+|||+|..|+-+|..|++. |.+|+|||++...
T Consensus 171 ~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~~l 204 (452)
T TIGR03452 171 SLVIVGGGYIAAEFAHVFSAL-GTRVTIVNRSTKL 204 (452)
T ss_pred cEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCcc
Confidence 899999999999999999999 9999999998654
No 363
>KOG4405|consensus
Probab=91.93 E-value=0.15 Score=57.22 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=36.0
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCC
Q psy14408 431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI 471 (720)
Q Consensus 431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~ 471 (720)
..+|||||||-|..-...|...++. |.+||=||++.+.++
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrs-G~sVLHlDsn~yYGg 45 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRS-GSSVLHLDSNEYYGG 45 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhc-CCceEeccCccccCC
Confidence 4579999999999999999999999 999999999876643
No 364
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.81 E-value=0.18 Score=54.03 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=30.4
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~ 468 (720)
-|.|||+|..|...|..|+++ |++|+|+|+...
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARA-GVDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhC-CCEEEEEECCHH
Confidence 589999999999999999999 999999998643
No 365
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=91.74 E-value=0.2 Score=56.25 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=31.8
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 469 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~ 469 (720)
-.|||||+|.+|+-+|..|++. |.+|+|+|++...
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~ 184 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHL-GKNVRIIQLEDRI 184 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCcEEEEeCCccc
Confidence 3899999999999999999999 9999999988643
No 366
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=91.61 E-value=0.2 Score=56.59 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=31.7
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 469 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~ 469 (720)
.|+|||+|..|+-+|..|++. |.+|+|+|++...
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~~~ 201 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRGL-GVQVTLIYRGELI 201 (446)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCeEEEEEeCCCC
Confidence 799999999999999999998 9999999998654
No 367
>KOG2755|consensus
Probab=91.61 E-value=0.13 Score=54.88 Aligned_cols=34 Identities=35% Similarity=0.534 Sum_probs=29.4
Q ss_pred EEEECCcHHHHHHHHHHHhc-CCCcEEEEccCCCC
Q psy14408 436 IIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDT 469 (720)
Q Consensus 436 VVIIGSGiAGLvAA~~LAea-~G~KVLVLEKG~~~ 469 (720)
.||||||++|.+||-+||.. +...|+||-+....
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~v 36 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV 36 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence 69999999999999999973 47899999986554
No 368
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=91.58 E-value=0.19 Score=58.17 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=31.4
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 469 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~ 469 (720)
.|+|||||..|+-+|..|++. |.+|+|+|+++..
T Consensus 354 ~VvViGgG~~g~E~A~~L~~~-g~~Vtli~~~~~l 387 (515)
T TIGR03140 354 DVAVIGGGNSGIEAAIDLAGI-VRHVTVLEFADEL 387 (515)
T ss_pred EEEEECCcHHHHHHHHHHHhc-CcEEEEEEeCCcC
Confidence 899999999999999999998 9999999987544
No 369
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.55 E-value=0.2 Score=54.96 Aligned_cols=32 Identities=16% Similarity=0.219 Sum_probs=29.8
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
-|.|||+|..|...|..++.+ |++|+|+|+..
T Consensus 9 ~VaVIGaG~MG~giA~~~a~a-G~~V~l~D~~~ 40 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAH-GLDVVAWDPAP 40 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 489999999999999999999 99999999753
No 370
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.54 E-value=0.21 Score=53.25 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=29.5
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
.|.|||+|..|...|..|+++ |++|+|+|+.
T Consensus 6 kI~vIGaG~mG~~iA~~la~~-G~~V~l~d~~ 36 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALA-GYDVLLNDVS 36 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 599999999999999999999 9999999985
No 371
>KOG1800|consensus
Probab=91.54 E-value=0.21 Score=55.67 Aligned_cols=35 Identities=26% Similarity=0.253 Sum_probs=31.5
Q ss_pred cEEEECCcHHHHHHHHHHHhc-CCCcEEEEccCCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDT 469 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea-~G~KVLVLEKG~~~ 469 (720)
-|.|||||++|+-+|.+|-++ .+++|.|+||.+.+
T Consensus 22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP 57 (468)
T KOG1800|consen 22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP 57 (468)
T ss_pred eEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence 899999999999999999884 47999999998765
No 372
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=91.51 E-value=0.24 Score=53.47 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=30.3
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|.|||+|..|+..|..|+++ |++|+++.|+.
T Consensus 7 ~I~IiG~GaiG~~lA~~L~~~-g~~V~~~~r~~ 38 (313)
T PRK06249 7 RIGIIGTGAIGGFYGAMLARA-GFDVHFLLRSD 38 (313)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCeEEEEEeCC
Confidence 699999999999999999999 99999999974
No 373
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=91.41 E-value=0.21 Score=54.16 Aligned_cols=32 Identities=34% Similarity=0.593 Sum_probs=30.1
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|.|||+|..|...|..|+++ |++|++++|..
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~-G~~V~~~~r~~ 35 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAA-GADVTLIGRAR 35 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCcEEEEecHH
Confidence 599999999999999999999 99999999863
No 374
>PRK10262 thioredoxin reductase; Provisional
Probab=91.34 E-value=0.22 Score=53.43 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=31.1
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~ 468 (720)
.|+|||+|..|+-+|..|++. |.+|+|+++...
T Consensus 148 ~vvVvGgG~~g~e~A~~l~~~-~~~Vtlv~~~~~ 180 (321)
T PRK10262 148 KVAVIGGGNTAVEEALYLSNI-ASEVHLIHRRDG 180 (321)
T ss_pred EEEEECCCHHHHHHHHHHHhh-CCEEEEEEECCc
Confidence 899999999999999999999 999999999854
No 375
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=91.31 E-value=0.2 Score=56.18 Aligned_cols=31 Identities=23% Similarity=0.429 Sum_probs=29.0
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
.|.|||+|..||++|.-||+. ||.|+.+|..
T Consensus 2 kI~viGtGYVGLv~g~~lA~~-GHeVv~vDid 32 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAEL-GHEVVCVDID 32 (414)
T ss_pred ceEEECCchHHHHHHHHHHHc-CCeEEEEeCC
Confidence 578999999999999999999 9999999963
No 376
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.08 E-value=0.25 Score=52.74 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=29.9
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|.|||+|..|...|..|+++ |++|+++|+..
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~-G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFART-GYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 589999999999999999999 99999999864
No 377
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=91.08 E-value=0.23 Score=56.38 Aligned_cols=33 Identities=9% Similarity=0.155 Sum_probs=30.9
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~ 468 (720)
.|||||+|..|+-+|..|++. |.+|+||++...
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~-G~~Vtlv~~~~~ 306 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRL-GAEVHCLYRRTR 306 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCEEEEEeecCc
Confidence 899999999999999999999 999999998743
No 378
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.03 E-value=0.32 Score=44.16 Aligned_cols=30 Identities=27% Similarity=0.535 Sum_probs=27.7
Q ss_pred EEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 436 IIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 436 VVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
|||||.|-.|..+|..|.+. |.+|+|+|+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-~~~vvvid~d 30 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-GIDVVVIDRD 30 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEEESS
T ss_pred eEEEcCCHHHHHHHHHHHhC-CCEEEEEECC
Confidence 79999999999999999997 8999999987
No 379
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=91.03 E-value=0.29 Score=49.99 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=32.0
Q ss_pred CCCcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccC
Q psy14408 430 SGDCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG 466 (720)
Q Consensus 430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG 466 (720)
......|+|||+|..|..+|..||+. |. +++|+|..
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~-Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARA-GIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHc-CCCEEEEECCC
Confidence 34456899999999999999999999 98 59999986
No 380
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=90.91 E-value=0.25 Score=59.14 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=31.9
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 469 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~ 469 (720)
.|+|||||..|+-.|..|++. |.+|+|||+++..
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~-G~eVTLIe~~~~l 347 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTAL-GSEVVSFEYSPQL 347 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhC-CCeEEEEeccCcc
Confidence 799999999999999999999 9999999998765
No 381
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=90.86 E-value=0.24 Score=57.24 Aligned_cols=34 Identities=18% Similarity=0.320 Sum_probs=31.7
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 469 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~ 469 (720)
+|+|||||..|+-+|..|++. |.+|+|++++...
T Consensus 353 ~VvVVGgG~~g~e~A~~L~~~-~~~Vtlv~~~~~l 386 (517)
T PRK15317 353 RVAVIGGGNSGVEAAIDLAGI-VKHVTVLEFAPEL 386 (517)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCEEEEEEECccc
Confidence 899999999999999999998 9999999988644
No 382
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=90.83 E-value=0.24 Score=57.93 Aligned_cols=34 Identities=26% Similarity=0.280 Sum_probs=31.7
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 469 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~ 469 (720)
.|+|||||..|+-+|..|++. |.+|+||+++...
T Consensus 145 ~VvVIGgG~~g~E~A~~L~~~-g~~Vtli~~~~~~ 178 (555)
T TIGR03143 145 DVFVIGGGFAAAEEAVFLTRY-ASKVTVIVREPDF 178 (555)
T ss_pred EEEEECCCHHHHHHHHHHHcc-CCEEEEEEeCCcc
Confidence 899999999999999999998 9999999998653
No 383
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=90.81 E-value=0.29 Score=50.03 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=29.8
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
-.|+|||||-.|...|..|.++ |.+|+|+++.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~-ga~V~VIs~~ 42 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKY-GAHIVVISPE 42 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCeEEEEcCC
Confidence 4899999999999999999999 9999999864
No 384
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=90.81 E-value=0.33 Score=46.19 Aligned_cols=33 Identities=18% Similarity=0.372 Sum_probs=30.2
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCCc-EEEEccC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSSLK-VLLIEAG 466 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G~K-VLVLEKG 466 (720)
.-.|+|||+|-+|-.+|..|++. |.+ |+|+-|.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECC
Confidence 34899999999999999999999 987 9999986
No 385
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=90.78 E-value=0.25 Score=60.22 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=31.7
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 469 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~ 469 (720)
.|||||||..|+-+|..|++. |.+|+|||+.+..
T Consensus 142 ~vvVVGgG~~GlE~A~~L~~~-G~~Vtvv~~~~~l 175 (785)
T TIGR02374 142 KAAVIGGGLLGLEAAVGLQNL-GMDVSVIHHAPGL 175 (785)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCeEEEEccCCch
Confidence 799999999999999999999 9999999988654
No 386
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=90.60 E-value=0.28 Score=53.56 Aligned_cols=32 Identities=19% Similarity=0.175 Sum_probs=29.6
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCc-EEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLK-VLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~K-VLVLEKG~ 467 (720)
.|||||+|..|+-+|..|++. |.+ |+|+++..
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~-g~~~Vtvi~~~~ 206 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLL-GAEKVYLAYRRT 206 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCeEEEEeecc
Confidence 799999999999999999998 987 99999864
No 387
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.55 E-value=0.3 Score=51.85 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=29.3
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
.|.|||+|..|+..|..|+++ |++|+++|+.
T Consensus 5 kI~VIG~G~mG~~ia~~la~~-g~~V~~~d~~ 35 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA-GYDVVMVDIS 35 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC-CCceEEEeCC
Confidence 599999999999999999999 9999999965
No 388
>PTZ00058 glutathione reductase; Provisional
Probab=90.55 E-value=0.27 Score=57.70 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=31.8
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 469 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~ 469 (720)
.|+|||+|..|+-+|..|++. |.+|+|+|++...
T Consensus 239 ~VvIIGgG~iGlE~A~~l~~~-G~~Vtli~~~~~i 272 (561)
T PTZ00058 239 RIGIAGSGYIAVELINVVNRL-GAESYIFARGNRL 272 (561)
T ss_pred EEEEECCcHHHHHHHHHHHHc-CCcEEEEEecccc
Confidence 799999999999999999999 9999999998654
No 389
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=90.45 E-value=0.33 Score=49.75 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=29.4
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
-|+|||||..|...|..|.+. |.+|+|++..
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~-ga~VtVvsp~ 41 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKA-GAQLRVIAEE 41 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 799999999999999999999 9999999864
No 390
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=90.45 E-value=0.35 Score=47.68 Aligned_cols=32 Identities=16% Similarity=0.246 Sum_probs=28.7
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
.-|||+|+|.+|..||..|.+. |++|+++|..
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~ 52 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDER 52 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHT-T-EEEEEESS
T ss_pred eEEEEECCCHHHHHHHHHHhHC-CCEEEeccCC
Confidence 5899999999999999999999 9999999975
No 391
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=90.25 E-value=0.39 Score=45.39 Aligned_cols=32 Identities=25% Similarity=0.530 Sum_probs=29.0
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG 466 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG 466 (720)
.-|+|||+|..|..+|..|++. |. +++|+|..
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~-Gv~~i~lvD~d 35 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS-GVGKITLVDDD 35 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH-TTSEEEEEESS
T ss_pred CEEEEECcCHHHHHHHHHHHHh-CCCceeecCCc
Confidence 4699999999999999999999 98 69999976
No 392
>PRK13748 putative mercuric reductase; Provisional
Probab=90.13 E-value=0.3 Score=56.63 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=30.3
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|+|||+|..|+-+|..|++. |.+|+||++..
T Consensus 272 ~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~ 303 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFARL-GSKVTILARST 303 (561)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCEEEEEecCc
Confidence 799999999999999999999 99999999864
No 393
>PRK12831 putative oxidoreductase; Provisional
Probab=90.01 E-value=0.32 Score=55.57 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=30.4
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|||||+|..|+-+|..|++. |.+|+||++..
T Consensus 283 ~VvVIGgG~va~d~A~~l~r~-Ga~Vtlv~r~~ 314 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALRL-GAEVHIVYRRS 314 (464)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCEEEEEeecC
Confidence 899999999999999999999 99999999864
No 394
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=89.92 E-value=0.43 Score=45.38 Aligned_cols=31 Identities=26% Similarity=0.470 Sum_probs=28.6
Q ss_pred EEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408 436 IIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG 467 (720)
Q Consensus 436 VVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~ 467 (720)
|+|||+|..|..+|..|++. |. +++|+|...
T Consensus 2 VliiG~GglGs~ia~~L~~~-Gv~~i~ivD~d~ 33 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARS-GVGKITLIDFDT 33 (143)
T ss_pred EEEECCCHHHHHHHHHHHHC-CCCEEEEEcCCC
Confidence 89999999999999999999 87 699999763
No 395
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=89.88 E-value=0.41 Score=47.12 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=28.7
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCCCcEEEEcc
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 465 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEK 465 (720)
-.|||||||-.|.--|..|.+. |++|+||..
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~-ga~V~VIsp 44 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDT-GAFVTVVSP 44 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEcC
Confidence 4799999999999999999999 999999953
No 396
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=89.82 E-value=0.36 Score=51.64 Aligned_cols=32 Identities=28% Similarity=0.291 Sum_probs=29.9
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|.|||+|..|...|..|+++ |++|.++++..
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-GHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence 599999999999999999999 99999999863
No 397
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=89.80 E-value=0.32 Score=54.66 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=29.7
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|.|||.|..|+..|..|+++ |++|+++|+..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~-G~~V~~~d~~~ 33 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL-GHEVTGVDIDQ 33 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc-CCeEEEEECCH
Confidence 489999999999999999999 99999999854
No 398
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=89.80 E-value=0.36 Score=53.84 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=30.5
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
..+|+|||+|.+|+.+|..|.+. |.+|+++|+.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~ 199 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGL-GATVTILDIN 199 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECC
Confidence 35799999999999999999999 9999999986
No 399
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=89.75 E-value=0.36 Score=52.34 Aligned_cols=32 Identities=31% Similarity=0.487 Sum_probs=28.9
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~ 467 (720)
-|.|||+|..|+++|..||.. |+ +|+|+|...
T Consensus 3 KV~VIGaG~vG~~iA~~la~~-g~~~VvlvDi~~ 35 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEK-ELADLVLLDVVE 35 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCC
Confidence 589999999999999999998 76 899999843
No 400
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=89.68 E-value=0.35 Score=54.39 Aligned_cols=31 Identities=26% Similarity=0.539 Sum_probs=29.7
Q ss_pred cEEEECCcHHHHHHHHHHHhcCC-CcEEEEccC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSS-LKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G-~KVLVLEKG 466 (720)
+|||||+|-.|.++|..||++ | .+|+|.+|.
T Consensus 3 ~ilviGaG~Vg~~va~~la~~-~d~~V~iAdRs 34 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQN-GDGEVTIADRS 34 (389)
T ss_pred cEEEECCchhHHHHHHHHHhC-CCceEEEEeCC
Confidence 799999999999999999999 7 999999996
No 401
>PLN02546 glutathione reductase
Probab=89.68 E-value=0.36 Score=56.68 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=31.7
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 469 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~ 469 (720)
+|+|||+|..|+-+|..|++. |.+|+|+|++...
T Consensus 254 ~V~VIGgG~iGvE~A~~L~~~-g~~Vtlv~~~~~i 287 (558)
T PLN02546 254 KIAIVGGGYIALEFAGIFNGL-KSDVHVFIRQKKV 287 (558)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCeEEEEEecccc
Confidence 899999999999999999998 9999999998654
No 402
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=89.60 E-value=0.36 Score=59.45 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=31.7
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 469 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~ 469 (720)
.+||||||..|+-+|..|++. |.+|+|||+++..
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~-G~~VtvVe~~~~l 180 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNL-GVETHVIEFAPML 180 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEeccccc
Confidence 689999999999999999999 9999999998654
No 403
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.59 E-value=0.4 Score=51.51 Aligned_cols=31 Identities=29% Similarity=0.505 Sum_probs=29.2
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
.|.|||+|..|...|..|+++ |++|+++|+.
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~-g~~V~~~d~~ 36 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARK-GLQVVLIDVM 36 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEECC
Confidence 589999999999999999999 9999999974
No 404
>PRK14694 putative mercuric reductase; Provisional
Probab=89.55 E-value=0.37 Score=54.86 Aligned_cols=32 Identities=19% Similarity=0.400 Sum_probs=30.2
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|+|||+|..|+-+|..|++. |.+|+|++++.
T Consensus 180 ~vvViG~G~~G~E~A~~l~~~-g~~Vtlv~~~~ 211 (468)
T PRK14694 180 RLLVIGASVVALELAQAFARL-GSRVTVLARSR 211 (468)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEECCC
Confidence 899999999999999999999 99999999863
No 405
>PRK04148 hypothetical protein; Provisional
Probab=89.47 E-value=0.3 Score=47.23 Aligned_cols=31 Identities=23% Similarity=0.377 Sum_probs=28.7
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|++||.| .|..+|..|++. |++|+.+|...
T Consensus 19 kileIG~G-fG~~vA~~L~~~-G~~ViaIDi~~ 49 (134)
T PRK04148 19 KIVELGIG-FYFKVAKKLKES-GFDVIVIDINE 49 (134)
T ss_pred EEEEEEec-CCHHHHHHHHHC-CCEEEEEECCH
Confidence 69999999 999889999999 99999999874
No 406
>PTZ00052 thioredoxin reductase; Provisional
Probab=89.41 E-value=0.37 Score=55.58 Aligned_cols=31 Identities=32% Similarity=0.367 Sum_probs=29.6
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
.|+|||+|..|+-+|..|++. |.+|+|+++.
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNEL-GFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCcEEEEEcC
Confidence 799999999999999999999 9999999975
No 407
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.39 E-value=0.4 Score=52.01 Aligned_cols=31 Identities=26% Similarity=0.272 Sum_probs=29.6
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
.|.|||+|..|...|..|+++ |++|+|++|.
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~-G~~V~~~~r~ 36 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASK-GVPVRLWARR 36 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 599999999999999999999 9999999985
No 408
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=89.37 E-value=0.38 Score=55.31 Aligned_cols=31 Identities=26% Similarity=0.325 Sum_probs=29.5
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
.|||||||..|+-+|..|++. |.+|+|+++.
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~ 212 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGI-GLDVTVMVRS 212 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHh-CCcEEEEEec
Confidence 699999999999999999999 9999999985
No 409
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.32 E-value=0.48 Score=47.25 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=28.3
Q ss_pred EEEECCcHHHHHHHHHHHhcCCCc-EEEEccC
Q psy14408 436 IIIVGASAAGCVLANRLSEVSSLK-VLLIEAG 466 (720)
Q Consensus 436 VVIIGSGiAGLvAA~~LAea~G~K-VLVLEKG 466 (720)
|+|||+|..|..+|..|++. |.+ ++|+|..
T Consensus 2 VlViG~GglGs~ia~~La~~-Gvg~i~lvD~D 32 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARS-GVGNLKLVDFD 32 (174)
T ss_pred EEEECcCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 89999999999999999999 985 9999986
No 410
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=89.15 E-value=0.44 Score=52.53 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=32.3
Q ss_pred CCCcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408 430 SGDCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG 467 (720)
Q Consensus 430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~ 467 (720)
...+.-|+|||+|-.|..+|..||+. |. +++|+|+..
T Consensus 21 ~L~~~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (338)
T PRK12475 21 KIREKHVLIVGAGALGAANAEALVRA-GIGKLTIADRDY 58 (338)
T ss_pred hhcCCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCc
Confidence 33456899999999999999999999 97 799999874
No 411
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=89.14 E-value=0.48 Score=52.32 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=32.8
Q ss_pred CCCcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408 430 SGDCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG 467 (720)
Q Consensus 430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~ 467 (720)
...+..|+|||+|..|..+|..||++ |. +++|+|...
T Consensus 21 ~L~~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (339)
T PRK07688 21 KLREKHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRDY 58 (339)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCc
Confidence 44556899999999999999999999 98 899999863
No 412
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=89.12 E-value=0.3 Score=44.38 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=30.1
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
...|+|||+|-.|..-|..|.+. |.+|+|+...
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~-gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEA-GAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCC-TBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEECCc
Confidence 34899999999999999999999 9999999976
No 413
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=89.09 E-value=0.49 Score=47.25 Aligned_cols=34 Identities=24% Similarity=0.250 Sum_probs=30.3
Q ss_pred CcccEEEECCcH-HHHHHHHHHHhcCCCcEEEEccC
Q psy14408 432 DCFDIIIVGASA-AGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 432 ~eyDVVIIGSGi-AGLvAA~~LAea~G~KVLVLEKG 466 (720)
....|+|||+|- +|..+|.+|.++ |.+|+|+.|.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~-g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNR-NATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhC-CCEEEEEECC
Confidence 346999999996 699999999999 9999999986
No 414
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=89.09 E-value=0.43 Score=53.94 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=30.2
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~ 468 (720)
.|.|||.|..|+..|..|+++ |++|+++|+...
T Consensus 5 kI~VIGlG~~G~~~A~~La~~-G~~V~~~D~~~~ 37 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASR-QKQVIGVDINQH 37 (415)
T ss_pred EEEEECcchhhHHHHHHHHhC-CCEEEEEeCCHH
Confidence 589999999999999999999 999999997533
No 415
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.95 E-value=0.44 Score=51.57 Aligned_cols=31 Identities=32% Similarity=0.367 Sum_probs=29.3
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
.|.|||+|..|.+.|..|+++ |++|.|++|.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-g~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-KISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-CCeEEEEecC
Confidence 489999999999999999999 9999999985
No 416
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=88.91 E-value=0.48 Score=50.61 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=29.7
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|.|||+|..|...|..|+++ |++|+++|+..
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~-G~~V~~~d~~~ 37 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAA-GMDVWLLDSDP 37 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 489999999999999999999 99999999763
No 417
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=88.81 E-value=0.42 Score=51.22 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=33.0
Q ss_pred cCCCcccEEEECCcHHHHHHHHHHHhcCC-CcEEEEccCC
Q psy14408 429 KSGDCFDIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGG 467 (720)
Q Consensus 429 ~~d~eyDVVIIGSGiAGLvAA~~LAea~G-~KVLVLEKG~ 467 (720)
+......|+|||+|-.|..+|..||+. | .+++|+|...
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~-GVg~itLiD~D~ 64 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALART-GIGAITLIDMDD 64 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCE
Confidence 344567999999999999999999999 8 6899999763
No 418
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.73 E-value=0.49 Score=51.33 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=29.2
Q ss_pred cEEEECCcHHHHHHHHHHHhcCC--CcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSS--LKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G--~KVLVLEKG~ 467 (720)
.|.|||+|..|+++|+.|++. | ..|+|+|+..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~-g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLR-GLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCCEEEEEECCc
Confidence 589999999999999999999 8 5899999864
No 419
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.70 E-value=0.45 Score=53.57 Aligned_cols=32 Identities=16% Similarity=0.344 Sum_probs=29.7
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
-|+|+|+|..|+++|..|+++ |++|++.|+..
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~-G~~V~~~d~~~ 38 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKL-GANVTVNDGKP 38 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence 589999999999999999999 99999999754
No 420
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=88.55 E-value=0.53 Score=52.97 Aligned_cols=35 Identities=29% Similarity=0.582 Sum_probs=30.1
Q ss_pred cEEEECCcHHHHHHHHHHHhc-------------CCCcEEEEccCCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEV-------------SSLKVLLIEAGGDT 469 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea-------------~G~KVLVLEKG~~~ 469 (720)
.|||||+|..|+-+|..|++. .|.+|+|||+++..
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l 222 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV 222 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence 799999999999999999861 27899999998654
No 421
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=88.43 E-value=0.59 Score=47.67 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=29.5
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
-|+|+|.|-.|..+|..|.+. |++|++.|+.
T Consensus 30 ~v~I~G~G~vG~~~A~~L~~~-G~~Vvv~D~~ 60 (200)
T cd01075 30 TVAVQGLGKVGYKLAEHLLEE-GAKLIVADIN 60 (200)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 699999999999999999999 9999999976
No 422
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=87.82 E-value=0.58 Score=53.13 Aligned_cols=32 Identities=13% Similarity=0.299 Sum_probs=29.8
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~ 467 (720)
.|||||+|..|+-+|..|++. |. +|+|+++..
T Consensus 275 ~VvViGgG~~g~e~A~~l~~~-G~~~Vtlv~~~~ 307 (457)
T PRK11749 275 RVVVIGGGNTAMDAARTAKRL-GAESVTIVYRRG 307 (457)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCCeEEEeeecC
Confidence 899999999999999999998 88 899999864
No 423
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=87.68 E-value=0.59 Score=54.31 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=29.8
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
-|.|||+|..|...|..|+++ |++|+|+|+..
T Consensus 7 kV~VIGaG~MG~gIA~~la~a-G~~V~l~d~~~ 38 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASA-GHQVLLYDIRA 38 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 499999999999999999999 99999999753
No 424
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=87.62 E-value=0.67 Score=47.25 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=32.0
Q ss_pred CCCcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccC
Q psy14408 430 SGDCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG 466 (720)
Q Consensus 430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG 466 (720)
...+.-|+|||.|-.|..+|..|++. |. +++|+|..
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d 54 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDD 54 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCC
Confidence 34556899999999999999999999 97 79999986
No 425
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.61 E-value=0.7 Score=49.84 Aligned_cols=32 Identities=31% Similarity=0.301 Sum_probs=30.2
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|.|||+|..|...|..|+++ |++|.|.+|..
T Consensus 6 ~I~iiG~G~~G~~lA~~l~~~-G~~V~~~~r~~ 37 (308)
T PRK14619 6 TIAILGAGAWGSTLAGLASAN-GHRVRVWSRRS 37 (308)
T ss_pred EEEEECccHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence 599999999999999999999 99999999864
No 426
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=87.47 E-value=0.6 Score=49.65 Aligned_cols=31 Identities=26% Similarity=0.229 Sum_probs=29.2
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
.|.|||.|..|.+.|..|+++ |++|+++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~-g~~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL-GHTVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC-CCEEEEEECC
Confidence 488999999999999999999 9999999986
No 427
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=87.38 E-value=0.42 Score=54.03 Aligned_cols=37 Identities=41% Similarity=0.633 Sum_probs=30.7
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC------------CCcEEEEccCCCC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVS------------SLKVLLIEAGGDT 469 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~------------G~KVLVLEKG~~~ 469 (720)
..+|+|||||.+|.-.|-.|++.- ..+|+|||+++..
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I 203 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI 203 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh
Confidence 358999999999999999998641 1399999999765
No 428
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=87.00 E-value=0.75 Score=49.44 Aligned_cols=31 Identities=13% Similarity=0.261 Sum_probs=28.8
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCc-EEEEccC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLK-VLLIEAG 466 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~K-VLVLEKG 466 (720)
-|+|+|||-+|.++|..|++. |.+ |+|+.|.
T Consensus 128 ~vlI~GAGGagrAia~~La~~-G~~~V~I~~R~ 159 (289)
T PRK12548 128 KLTVIGAGGAATAIQVQCALD-GAKEITIFNIK 159 (289)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCC
Confidence 689999999999999999999 987 9999986
No 429
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=86.98 E-value=0.73 Score=49.54 Aligned_cols=32 Identities=19% Similarity=0.438 Sum_probs=29.5
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG 466 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG 466 (720)
-.|+|||+|-+|.++|..|++. |. +|+|++|.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~-G~~~I~I~nR~ 160 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTL-GVERLTIFDVD 160 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCCEEEEECCC
Confidence 3799999999999999999999 87 79999986
No 430
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=86.84 E-value=0.75 Score=47.85 Aligned_cols=33 Identities=33% Similarity=0.567 Sum_probs=30.0
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCCCc---EEEEccCC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSSLK---VLLIEAGG 467 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G~K---VLVLEKG~ 467 (720)
-.|+|+|+|-+|..+|..|++. |.+ |.|++|.+
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~-G~~~~~i~ivdr~g 61 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAA-GAKPENIVVVDSKG 61 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHc-CcCcceEEEEeCCC
Confidence 4799999999999999999998 975 99999974
No 431
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=86.74 E-value=0.7 Score=53.30 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=28.1
Q ss_pred cEEEECCcHHHHHHHHHHHhc-CCCcEEEEccC
Q psy14408 435 DIIIVGASAAGCVLANRLSEV-SSLKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea-~G~KVLVLEKG 466 (720)
.|.|||+|..|+.+|..||++ +|++|+.+|..
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~ 35 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDIS 35 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECC
Confidence 589999999999999999987 24789999964
No 432
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=86.70 E-value=0.68 Score=49.83 Aligned_cols=32 Identities=34% Similarity=0.477 Sum_probs=28.7
Q ss_pred EEEECCcHHHHHHHHHHHhcCCC-cEEEEccCCC
Q psy14408 436 IIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGD 468 (720)
Q Consensus 436 VVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~~ 468 (720)
|.|||+|..|..+|..|+.. |+ +|+|+|....
T Consensus 1 I~IIGaG~vG~~ia~~la~~-~l~eV~L~Di~e~ 33 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK-ELGDVVLLDIVEG 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC-CCcEEEEEeCCCc
Confidence 57999999999999999988 77 9999998743
No 433
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=86.69 E-value=0.67 Score=56.07 Aligned_cols=32 Identities=16% Similarity=0.273 Sum_probs=30.0
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
-|.|||+|..|...|..+|.+ |++|+|+|...
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~ 346 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASK-GVPVIMKDINQ 346 (715)
T ss_pred eEEEECCchhHHHHHHHHHhC-CCeEEEEeCCH
Confidence 599999999999999999999 99999999863
No 434
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=86.51 E-value=0.88 Score=46.87 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=31.8
Q ss_pred CCCcccEEEECCcHHHHHHHHHHHhcCCCc-EEEEccC
Q psy14408 430 SGDCFDIIIVGASAAGCVLANRLSEVSSLK-VLLIEAG 466 (720)
Q Consensus 430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~K-VLVLEKG 466 (720)
......|+|||+|..|..+|..|++. |.. ++|+|..
T Consensus 25 ~L~~~~V~ViG~GglGs~ia~~La~~-Gvg~i~lvD~D 61 (212)
T PRK08644 25 KLKKAKVGIAGAGGLGSNIAVALARS-GVGNLKLVDFD 61 (212)
T ss_pred HHhCCCEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 34556899999999999999999999 875 9999986
No 435
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=86.47 E-value=0.83 Score=49.39 Aligned_cols=33 Identities=24% Similarity=0.474 Sum_probs=29.3
Q ss_pred cEEEECCcHHHHHHHHHHHhcCC--CcEEEEccCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSS--LKVLLIEAGGD 468 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G--~KVLVLEKG~~ 468 (720)
-|+|||+|..|.++|+.|++. | .+|+|+|+...
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~-g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQ-GIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCcc
Confidence 489999999999999999998 8 47999998643
No 436
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=86.43 E-value=0.76 Score=53.43 Aligned_cols=33 Identities=27% Similarity=0.435 Sum_probs=30.0
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~ 468 (720)
-|.|||+|..|...|..|+++ |+.|+|+|+...
T Consensus 9 ~V~VIGaG~MG~gIA~~la~a-G~~V~l~D~~~e 41 (507)
T PRK08268 9 TVAVIGAGAMGAGIAQVAAQA-GHTVLLYDARAG 41 (507)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence 489999999999999999999 999999997543
No 437
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=86.43 E-value=0.74 Score=53.21 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=29.3
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
.|.|||+|..|...|..|+++ |++|+|.|+.
T Consensus 6 kIavIG~G~MG~~iA~~la~~-G~~V~v~D~~ 36 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLA-GIDVAVFDPH 36 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCC
Confidence 489999999999999999999 9999999975
No 438
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=86.30 E-value=0.75 Score=55.75 Aligned_cols=32 Identities=13% Similarity=0.208 Sum_probs=29.9
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCc-EEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLK-VLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~K-VLVLEKG~ 467 (720)
.|||||||..|+-+|..|.+. |.+ |+|+++..
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r~-Ga~~Vtlv~r~~ 604 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKRL-GAERVTIVYRRS 604 (752)
T ss_pred cEEEECCcHHHHHHHHHHHHc-CCCeEEEeeecC
Confidence 799999999999999999999 987 99999874
No 439
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=86.24 E-value=0.55 Score=51.32 Aligned_cols=34 Identities=12% Similarity=0.205 Sum_probs=31.3
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
..-+|+|||+|.+|.-+|+-+..- |.+|++||.+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n 200 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLN 200 (371)
T ss_pred CCccEEEECCccccchHHHHHhcc-CCeeEEEecC
Confidence 345999999999999999999998 9999999987
No 440
>PRK08017 oxidoreductase; Provisional
Probab=86.14 E-value=0.9 Score=46.31 Aligned_cols=31 Identities=26% Similarity=0.297 Sum_probs=28.8
Q ss_pred cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
-|+|+|+ |..|..+|..|+++ |++|+++.|.
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~-g~~v~~~~r~ 35 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRR-GYRVLAACRK 35 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHC-CCEEEEEeCC
Confidence 4999998 99999999999999 9999999886
No 441
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=86.11 E-value=0.75 Score=55.64 Aligned_cols=32 Identities=13% Similarity=0.227 Sum_probs=29.9
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
-|.|||+|..|...|..+|.+ |+.|+|+|...
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~ 346 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASK-GTPIVMKDINQ 346 (714)
T ss_pred eEEEECCchHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 599999999999999999999 99999999753
No 442
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=85.99 E-value=0.83 Score=51.86 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=30.1
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
-.|+|||.|..|+.+|..|... |.+|+|+|+..
T Consensus 203 ktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~ 235 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDP 235 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCh
Confidence 3899999999999999999988 99999999864
No 443
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=85.80 E-value=0.78 Score=50.14 Aligned_cols=31 Identities=19% Similarity=0.380 Sum_probs=29.3
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
-|.|||||..|...|..+|.. |++|++.|..
T Consensus 5 kv~ViGaG~MG~gIA~~~A~~-G~~V~l~D~~ 35 (307)
T COG1250 5 KVAVIGAGVMGAGIAAVFALA-GYDVVLKDIS 35 (307)
T ss_pred EEEEEcccchhHHHHHHHhhc-CCceEEEeCC
Confidence 589999999999999999997 9999999987
No 444
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=85.72 E-value=0.98 Score=46.31 Aligned_cols=32 Identities=25% Similarity=0.322 Sum_probs=28.9
Q ss_pred cEEEEC-CcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVG-ASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIG-SGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|.||| +|..|.+.|..|+++ |++|+|++|..
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~-G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA-GNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC-CCEEEEEEcCH
Confidence 489997 799999999999999 99999998863
No 445
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=85.68 E-value=0.96 Score=47.89 Aligned_cols=36 Identities=19% Similarity=0.378 Sum_probs=30.1
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcC----------CCcEEEEccCC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVS----------SLKVLLIEAGG 467 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~----------G~KVLVLEKG~ 467 (720)
....|+|||+|..|+.+|..||+.. |.+++|+|...
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 4569999999999999999999961 23899999753
No 446
>PRK06223 malate dehydrogenase; Reviewed
Probab=85.63 E-value=0.91 Score=48.78 Aligned_cols=32 Identities=34% Similarity=0.468 Sum_probs=29.0
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~ 467 (720)
.|.|||+|..|.++|..|+.. |+ .|+|+|...
T Consensus 4 KI~VIGaG~vG~~ia~~la~~-~~~ev~L~D~~~ 36 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALK-ELGDVVLFDIVE 36 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEEECCC
Confidence 699999999999999999998 76 999999854
No 447
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=85.52 E-value=0.88 Score=51.14 Aligned_cols=31 Identities=16% Similarity=0.154 Sum_probs=27.3
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|.|||.|..|+..|..|| . |++|+++|+..
T Consensus 2 kI~VIGlGyvGl~~A~~lA-~-G~~VigvD~d~ 32 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-Q-NHEVVALDILP 32 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-h-CCcEEEEECCH
Confidence 3889999999999998777 6 99999999753
No 448
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.41 E-value=0.99 Score=51.02 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=30.4
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~ 468 (720)
-|+|+|.|.+|+++|..|+++ |++|++.|....
T Consensus 7 ~~~v~G~g~~G~~~a~~l~~~-g~~v~~~d~~~~ 39 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRKN-GAEVAAYDAELK 39 (445)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCCC
Confidence 699999999999999999999 999999997654
No 449
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=84.76 E-value=1.2 Score=44.52 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=29.3
Q ss_pred ccEEEECC-cHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 434 FDIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 434 yDVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
-.|+|+|+ |..|..+|..|++. |.+|+++.|.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~-g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLARE-GARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 47999997 99999999999998 9999999876
No 450
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=84.66 E-value=1 Score=47.89 Aligned_cols=31 Identities=13% Similarity=0.290 Sum_probs=29.1
Q ss_pred EEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 436 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 436 VVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
|-|||.|..|...|..|++. |++|++.++..
T Consensus 2 IgvIG~G~mG~~iA~~l~~~-G~~V~~~dr~~ 32 (291)
T TIGR01505 2 VGFIGLGIMGSPMSINLAKA-GYQLHVTTIGP 32 (291)
T ss_pred EEEEEecHHHHHHHHHHHHC-CCeEEEEcCCH
Confidence 78999999999999999999 99999999864
No 451
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=84.51 E-value=1.3 Score=46.74 Aligned_cols=36 Identities=17% Similarity=0.410 Sum_probs=31.5
Q ss_pred CCCcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccC
Q psy14408 430 SGDCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG 466 (720)
Q Consensus 430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG 466 (720)
...+..|+|||+|..|..+|..||+. |. +++|+|..
T Consensus 29 ~L~~~~VliiG~GglGs~va~~La~~-Gvg~i~lvD~D 65 (245)
T PRK05690 29 KLKAARVLVVGLGGLGCAASQYLAAA-GVGTLTLVDFD 65 (245)
T ss_pred HhcCCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCC
Confidence 33457999999999999999999999 86 78899976
No 452
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=84.40 E-value=1 Score=54.71 Aligned_cols=32 Identities=25% Similarity=0.352 Sum_probs=29.9
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
-|.|||+|..|...|..+|.+ |++|+|+|...
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~~-G~~V~l~d~~~ 368 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVDK-GLKTVLKDATP 368 (737)
T ss_pred EEEEECCCHhHHHHHHHHHhC-CCcEEEecCCH
Confidence 599999999999999999999 99999999753
No 453
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=84.37 E-value=1.2 Score=48.69 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=30.0
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGD 468 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~~ 468 (720)
-|+|||+|..|..+|..|+.. |+ +|+|+|....
T Consensus 8 KI~IIGaG~vG~~ia~~la~~-gl~~i~LvDi~~~ 41 (321)
T PTZ00082 8 KISLIGSGNIGGVMAYLIVLK-NLGDVVLFDIVKN 41 (321)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCCeEEEEeCCCc
Confidence 699999999999999999998 86 8999998654
No 454
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=84.35 E-value=0.87 Score=43.94 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=27.0
Q ss_pred EEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 436 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 436 VVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
++|+|+|..|...|..++.- |++|+|+|-..
T Consensus 1 L~I~GaG~va~al~~la~~l-g~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALL-GFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHC-TEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhC-CCEEEEEcCCc
Confidence 58999999999999999999 99999999763
No 455
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=84.28 E-value=1.3 Score=46.52 Aligned_cols=37 Identities=19% Similarity=0.406 Sum_probs=31.5
Q ss_pred CCCcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408 430 SGDCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG 467 (720)
Q Consensus 430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~ 467 (720)
......|+|||+|-.|..+|..|++. |. +++|+|...
T Consensus 21 ~L~~~~VlvvG~GglGs~va~~La~~-Gvg~i~lvD~D~ 58 (240)
T TIGR02355 21 ALKASRVLIVGLGGLGCAASQYLAAA-GVGNLTLLDFDT 58 (240)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCc
Confidence 34456999999999999999999999 85 688888764
No 456
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=84.25 E-value=1.1 Score=52.14 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=30.1
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.-.|+|||+|.+|+.++..+... |.+|.++|...
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 45899999999999999988888 99999999753
No 457
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=84.19 E-value=1.2 Score=46.04 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=31.1
Q ss_pred CCCcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccC
Q psy14408 430 SGDCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG 466 (720)
Q Consensus 430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG 466 (720)
...+.-|+|||+|..|..+|..|++. |. +++|+|..
T Consensus 18 ~L~~~~VlivG~GglGs~va~~La~~-Gvg~i~lvD~D 54 (228)
T cd00757 18 KLKNARVLVVGAGGLGSPAAEYLAAA-GVGKLGLVDDD 54 (228)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCC
Confidence 33456899999999999999999999 87 68888876
No 458
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=84.03 E-value=1.2 Score=47.09 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=29.3
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
.|+|||+|-+|.++|..|++. |.+|+|++|.
T Consensus 119 ~vliiGaGg~g~aia~~L~~~-g~~v~v~~R~ 149 (270)
T TIGR00507 119 RVLIIGAGGAARAVALPLLKA-DCNVIIANRT 149 (270)
T ss_pred EEEEEcCcHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 699999999999999999999 9999999886
No 459
>PRK08328 hypothetical protein; Provisional
Probab=84.02 E-value=1.2 Score=46.30 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=30.3
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG 467 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~ 467 (720)
.+.-|+|||+|-.|..+|..||+. |. +++|+|...
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~-Gvg~i~lvD~D~ 61 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAA-GVGRILLIDEQT 61 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCc
Confidence 456899999999999999999999 86 588998763
No 460
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=83.92 E-value=1.2 Score=50.10 Aligned_cols=32 Identities=41% Similarity=0.535 Sum_probs=29.8
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|+|||+|..|..+|..|.+. |++|+++|+..
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~-g~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGE-NNDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEECCH
Confidence 589999999999999999999 99999999853
No 461
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.91 E-value=1.2 Score=50.75 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=30.0
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|+|||.|.+|+++|..|++. |++|++.|+..
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~-G~~V~~~D~~~ 47 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKL-GAKVTAFDKKS 47 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHC-CCEEEEECCCC
Confidence 699999999999999999999 99999999764
No 462
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=83.77 E-value=1.2 Score=48.63 Aligned_cols=33 Identities=33% Similarity=0.530 Sum_probs=29.8
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~ 468 (720)
-|.|||+|..|+-.|++|+++ |..|+++=|..+
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~-g~~V~~~~R~~~ 34 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKA-GHDVTLLVRSRR 34 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhC-CCeEEEEecHHH
Confidence 479999999999999999999 888999988764
No 463
>PRK07326 short chain dehydrogenase; Provisional
Probab=83.74 E-value=1.3 Score=44.59 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=28.1
Q ss_pred cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
-|+|+|| |..|..+|.+|+++ |.+|+++.|.
T Consensus 8 ~ilItGatg~iG~~la~~l~~~-g~~V~~~~r~ 39 (237)
T PRK07326 8 VALITGGSKGIGFAIAEALLAE-GYKVAITARD 39 (237)
T ss_pred EEEEECCCCcHHHHHHHHHHHC-CCEEEEeeCC
Confidence 5889985 99999999999998 9999999886
No 464
>KOG2304|consensus
Probab=83.68 E-value=0.96 Score=47.56 Aligned_cols=33 Identities=33% Similarity=0.515 Sum_probs=30.9
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~ 468 (720)
.|.|||||..|...|-..|.. |+.|.|+|+...
T Consensus 13 ~V~ivGaG~MGSGIAQv~a~s-g~~V~l~d~~~~ 45 (298)
T KOG2304|consen 13 NVAIVGAGQMGSGIAQVAATS-GLNVWLVDANED 45 (298)
T ss_pred ceEEEcccccchhHHHHHHhc-CCceEEecCCHH
Confidence 799999999999999999999 999999998743
No 465
>PRK07774 short chain dehydrogenase; Provisional
Probab=83.63 E-value=1.4 Score=44.84 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=28.9
Q ss_pred cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
-|||+|| |..|..+|.+|+++ |++|++++|.
T Consensus 8 ~vlItGasg~iG~~la~~l~~~-g~~vi~~~r~ 39 (250)
T PRK07774 8 VAIVTGAAGGIGQAYAEALARE-GASVVVADIN 39 (250)
T ss_pred EEEEECCCchHHHHHHHHHHHC-CCEEEEEeCC
Confidence 5999998 99999999999999 9999999986
No 466
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=83.60 E-value=1.4 Score=45.29 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=28.6
Q ss_pred cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
-|+|+|| |..|..+|..|+++ |++|+++++..
T Consensus 8 ~vlItGas~~iG~~ia~~l~~~-G~~v~~~~r~~ 40 (257)
T PRK07067 8 VALLTGAASGIGEAVAERYLAE-GARVVIADIKP 40 (257)
T ss_pred EEEEeCCCchHHHHHHHHHHHc-CCEEEEEcCCH
Confidence 5889986 88899999999999 99999998863
No 467
>PRK06057 short chain dehydrogenase; Provisional
Probab=83.48 E-value=1.4 Score=45.23 Aligned_cols=32 Identities=25% Similarity=0.305 Sum_probs=29.1
Q ss_pred cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
-|+|+|| |..|..+|.+|+++ |++|++++|..
T Consensus 9 ~vlItGasggIG~~~a~~l~~~-G~~v~~~~r~~ 41 (255)
T PRK06057 9 VAVITGGGSGIGLATARRLAAE-GATVVVGDIDP 41 (255)
T ss_pred EEEEECCCchHHHHHHHHHHHc-CCEEEEEeCCH
Confidence 5899999 89999999999999 99999998863
No 468
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.15 E-value=1.5 Score=44.31 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=28.7
Q ss_pred cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
-++|+|+ |..|..+|..|+++ |.+|+++++.
T Consensus 7 ~~lItG~~g~iG~~~a~~l~~~-G~~vi~~~r~ 38 (253)
T PRK08217 7 VIVITGGAQGLGRAMAEYLAQK-GAKLALIDLN 38 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHC-CCEEEEEeCC
Confidence 5899998 99999999999999 9999999876
No 469
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=83.01 E-value=1.4 Score=47.50 Aligned_cols=32 Identities=16% Similarity=0.376 Sum_probs=30.1
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
-.|+|||.|-.|..+|..|+.. |.+|+|++|.
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~-G~~V~v~~R~ 183 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSAL-GARVFVGARS 183 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 4799999999999999999998 9999999986
No 470
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=82.92 E-value=1.7 Score=41.28 Aligned_cols=32 Identities=25% Similarity=0.467 Sum_probs=28.8
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCC-CcEEEEccC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSS-LKVLLIEAG 466 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G-~KVLVLEKG 466 (720)
-.|+|||+|..|...|..|++. | .+|.++++.
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~-g~~~v~v~~r~ 52 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAEL-GAAKIVIVNRT 52 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-CCCEEEEEcCC
Confidence 3799999999999999999988 6 789999986
No 471
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=82.91 E-value=1.3 Score=51.75 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=29.5
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
--|+|+|+|-+|.++|+.|+++ |.+|+|+.|.
T Consensus 380 k~vlIlGaGGagrAia~~L~~~-G~~V~i~nR~ 411 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEK-GARVVIANRT 411 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 3699999999999999999999 9999999885
No 472
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=82.89 E-value=1.8 Score=37.94 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=27.4
Q ss_pred EEEECCcHHHHHHHHHHHhcCC---CcEEEE-ccC
Q psy14408 436 IIIVGASAAGCVLANRLSEVSS---LKVLLI-EAG 466 (720)
Q Consensus 436 VVIIGSGiAGLvAA~~LAea~G---~KVLVL-EKG 466 (720)
+.|||+|-.|.+.|..|.++ | .+|+++ +|.
T Consensus 2 I~iIG~G~mg~al~~~l~~~-g~~~~~v~~~~~r~ 35 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLAS-GIKPHEVIIVSSRS 35 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHT-TS-GGEEEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHC-CCCceeEEeeccCc
Confidence 67999999999999999999 9 899966 876
No 473
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=82.85 E-value=1.5 Score=44.58 Aligned_cols=37 Identities=19% Similarity=0.335 Sum_probs=31.8
Q ss_pred CCCcccEEEECCcHHHHHHHHHHHhcCCCc-EEEEccCC
Q psy14408 430 SGDCFDIIIVGASAAGCVLANRLSEVSSLK-VLLIEAGG 467 (720)
Q Consensus 430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~K-VLVLEKG~ 467 (720)
...+.-|+|||+|..|..+|..|++. |.+ ++|+|...
T Consensus 16 ~L~~s~VlviG~gglGsevak~L~~~-GVg~i~lvD~d~ 53 (198)
T cd01485 16 KLRSAKVLIIGAGALGAEIAKNLVLA-GIDSITIVDHRL 53 (198)
T ss_pred HHhhCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEECCc
Confidence 33456999999999999999999999 875 88999763
No 474
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=82.77 E-value=1.4 Score=47.56 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=30.7
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
.-.|+|||.|.+|..+|..|.+. |.+|+++++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~ 184 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKAL-GANVTVGARK 184 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCEEEEEECC
Confidence 35899999999999999999998 9999999987
No 475
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=82.76 E-value=1.6 Score=42.58 Aligned_cols=31 Identities=19% Similarity=0.380 Sum_probs=27.5
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
.|-|||-|..|...|.+|+++ |++|.+.|+.
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~-g~~v~~~d~~ 33 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKA-GYEVTVYDRS 33 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHT-TTEEEEEESS
T ss_pred EEEEEchHHHHHHHHHHHHhc-CCeEEeeccc
Confidence 588999999999999999999 9999999986
No 476
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=82.57 E-value=1.6 Score=44.69 Aligned_cols=31 Identities=23% Similarity=0.413 Sum_probs=28.5
Q ss_pred cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
-|+|+|| |..|..+|.+|+++ |++|+++.|.
T Consensus 12 ~vlItGa~g~iG~~ia~~l~~~-G~~V~~~~r~ 43 (255)
T PRK07523 12 RALVTGSSQGIGYALAEGLAQA-GAEVILNGRD 43 (255)
T ss_pred EEEEECCcchHHHHHHHHHHHc-CCEEEEEeCC
Confidence 5999996 89999999999999 9999999886
No 477
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=82.53 E-value=2.1 Score=37.48 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=28.5
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCCCcEEEEcc
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 465 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEK 465 (720)
-.++|+|+|..|..+|..|.+..+.+|.|++|
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 37999999999999999999973578999998
No 478
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=82.47 E-value=1.3 Score=53.57 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=28.9
Q ss_pred cEEEECCcHHHHHHHHHHH-hcCCCcEEEEccC
Q psy14408 435 DIIIVGASAAGCVLANRLS-EVSSLKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LA-ea~G~KVLVLEKG 466 (720)
-|.|||+|..|...|..+| .+ |+.|+|+|..
T Consensus 311 ~v~ViGaG~mG~giA~~~a~~~-G~~V~l~d~~ 342 (708)
T PRK11154 311 KVGVLGGGLMGGGIAYVTATKA-GLPVRIKDIN 342 (708)
T ss_pred EEEEECCchhhHHHHHHHHHHc-CCeEEEEeCC
Confidence 5999999999999999999 77 9999999975
No 479
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=82.36 E-value=1.6 Score=46.56 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=29.6
Q ss_pred ccEEEECCcHHHHHHHHHHHhcCC-CcEEEEccC
Q psy14408 434 FDIIIVGASAAGCVLANRLSEVSS-LKVLLIEAG 466 (720)
Q Consensus 434 yDVVIIGSGiAGLvAA~~LAea~G-~KVLVLEKG 466 (720)
-.|+|||+|-+|.++|..|++. | .+|+|+.|.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~-g~~~V~v~~R~ 156 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDL-GVAEITIVNRT 156 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHc-CCCEEEEEeCC
Confidence 3799999999999999999998 9 789999986
No 480
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=82.33 E-value=1.1 Score=51.28 Aligned_cols=33 Identities=15% Similarity=0.405 Sum_probs=30.9
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~ 468 (720)
.|||||+|..|+=+|..|++. +.+|+|+.|+..
T Consensus 206 ~VvVVG~G~Sg~diA~~L~~~-a~~V~l~~r~~~ 238 (461)
T PLN02172 206 VVVVIGNFASGADISRDIAKV-AKEVHIASRASE 238 (461)
T ss_pred EEEEECCCcCHHHHHHHHHHh-CCeEEEEEeecc
Confidence 899999999999999999998 999999998754
No 481
>PRK05993 short chain dehydrogenase; Provisional
Probab=82.30 E-value=1.6 Score=45.66 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=28.6
Q ss_pred cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
=|+|+|| |..|..+|..|+++ |++|+++.|..
T Consensus 6 ~vlItGasggiG~~la~~l~~~-G~~Vi~~~r~~ 38 (277)
T PRK05993 6 SILITGCSSGIGAYCARALQSD-GWRVFATCRKE 38 (277)
T ss_pred EEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCH
Confidence 3888998 99999999999999 99999998863
No 482
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.28 E-value=1.4 Score=50.55 Aligned_cols=31 Identities=13% Similarity=-0.036 Sum_probs=29.4
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
-|+|+|.|..|.++|..|.+. |.+|+|.|..
T Consensus 10 ~v~v~G~G~sG~~~~~~l~~~-g~~v~~~d~~ 40 (468)
T PRK04690 10 RVALWGWGREGRAAYRALRAH-LPAQALTLFC 40 (468)
T ss_pred EEEEEccchhhHHHHHHHHHc-CCEEEEEcCC
Confidence 599999999999999999999 9999999964
No 483
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=82.10 E-value=1.3 Score=55.19 Aligned_cols=32 Identities=9% Similarity=0.203 Sum_probs=30.0
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|||||||.+|+-||..+.+. |.+|+|+.+..
T Consensus 449 ~VvVIGGG~tA~D~A~ta~R~-Ga~Vtlv~rr~ 480 (944)
T PRK12779 449 EVFVIGGGNTAMDAARTAKRL-GGNVTIVYRRT 480 (944)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCEEEEEEecC
Confidence 799999999999999999999 99999998764
No 484
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=82.00 E-value=1.6 Score=47.00 Aligned_cols=32 Identities=16% Similarity=0.308 Sum_probs=29.9
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|.|||.|..|...|..|+++ |++|+|.++..
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~-G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQ-GHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHC-CCeEEEEcCCH
Confidence 689999999999999999999 99999999863
No 485
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.93 E-value=1.6 Score=45.95 Aligned_cols=31 Identities=16% Similarity=0.272 Sum_probs=27.8
Q ss_pred cEEEECCc---HHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 435 DIIIVGAS---AAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGSG---iAGLvAA~~LAea~G~KVLVLEKG 466 (720)
-|||.||+ -.|..+|..|+++ |.+|+++.|.
T Consensus 9 ~~lVTGas~~~GIG~aiA~~la~~-Ga~V~~~~r~ 42 (271)
T PRK06505 9 RGLIMGVANDHSIAWGIAKQLAAQ-GAELAFTYQG 42 (271)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHhC-CCEEEEecCc
Confidence 58999987 6899999999999 9999999775
No 486
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=81.79 E-value=1.6 Score=50.01 Aligned_cols=32 Identities=22% Similarity=0.505 Sum_probs=29.1
Q ss_pred EEEECCcHHHHHHHHHHHhcCCC------cEEEEccCCC
Q psy14408 436 IIIVGASAAGCVLANRLSEVSSL------KVLLIEAGGD 468 (720)
Q Consensus 436 VVIIGSGiAGLvAA~~LAea~G~------KVLVLEKG~~ 468 (720)
|+|||+|..|+-+|..||.. |. +++|+|....
T Consensus 2 VlvVGaGGlGcE~lKnLal~-Gv~~g~~G~I~IvD~D~I 39 (435)
T cd01490 2 VFLVGAGAIGCELLKNFALM-GVGTGESGEITVTDMDNI 39 (435)
T ss_pred EEEECCCHHHHHHHHHHHHc-CCCcCCCCeEEEECCCCc
Confidence 89999999999999999999 98 8999997543
No 487
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=81.78 E-value=1.8 Score=43.97 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=28.1
Q ss_pred cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
-|+|+|+ |..|..+|.+|+++ |++|+++.|.
T Consensus 7 ~vlItGas~gIG~~ia~~l~~~-G~~vi~~~r~ 38 (248)
T TIGR01832 7 VALVTGANTGLGQGIAVGLAEA-GADIVGAGRS 38 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHC-CCEEEEEcCc
Confidence 5899997 78899999999999 9999999875
No 488
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.76 E-value=1.8 Score=43.85 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=29.0
Q ss_pred cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
-|+|+|| |..|..+|.+|+++ |++|+++.|..
T Consensus 7 ~vlItGasg~iG~~l~~~l~~~-G~~V~~~~r~~ 39 (251)
T PRK07231 7 VAIVTGASSGIGEGIARRFAAE-GARVVVTDRNE 39 (251)
T ss_pred EEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 6899996 89999999999999 99999999874
No 489
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=81.76 E-value=1.5 Score=52.95 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=29.1
Q ss_pred cEEEECCcHHHHHHHHHHH-hcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLS-EVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LA-ea~G~KVLVLEKG~ 467 (720)
-|.|||+|..|...|..+| ++ |+.|+|+|...
T Consensus 306 ~v~ViGaG~mG~~iA~~~a~~~-G~~V~l~d~~~ 338 (699)
T TIGR02440 306 KVGILGGGLMGGGIASVTATKA-GIPVRIKDINP 338 (699)
T ss_pred EEEEECCcHHHHHHHHHHHHHc-CCeEEEEeCCH
Confidence 5999999999999999998 57 99999999864
No 490
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=81.58 E-value=2.1 Score=41.57 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=28.8
Q ss_pred EEEECC-cHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 436 IIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 436 VVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
|+|+|| |..|-.++.+|.++ |++|.++=|..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~-~~~V~~~~R~~ 32 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR-GHEVTALVRSP 32 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-TSEEEEEESSG
T ss_pred eEEECCCChHHHHHHHHHHHC-CCEEEEEecCc
Confidence 799997 99999999999999 99999999873
No 491
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=81.51 E-value=1.8 Score=44.66 Aligned_cols=32 Identities=16% Similarity=0.418 Sum_probs=27.5
Q ss_pred cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
-|+|+|| |-.|..+|.+|+++ |.+|++++|..
T Consensus 7 ~vlItGas~gIG~~ia~~l~~~-G~~V~~~~r~~ 39 (262)
T TIGR03325 7 VVLVTGGASGLGRAIVDRFVAE-GARVAVLDKSA 39 (262)
T ss_pred EEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 5777776 67899999999999 99999998863
No 492
>PRK07060 short chain dehydrogenase; Provisional
Probab=81.49 E-value=1.9 Score=43.58 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=28.7
Q ss_pred cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
-++|+|+ |..|..+|..|+++ |++|+++.|.
T Consensus 11 ~~lItGa~g~iG~~~a~~l~~~-g~~V~~~~r~ 42 (245)
T PRK07060 11 SVLVTGASSGIGRACAVALAQR-GARVVAAARN 42 (245)
T ss_pred EEEEeCCcchHHHHHHHHHHHC-CCEEEEEeCC
Confidence 6899997 89999999999999 9999999986
No 493
>PRK08223 hypothetical protein; Validated
Probab=81.46 E-value=1.7 Score=47.13 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=32.1
Q ss_pred cCCCcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408 429 KSGDCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG 467 (720)
Q Consensus 429 ~~d~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~ 467 (720)
+...+..|+|||+|-.|+.+|.+||+. |. ++.|+|...
T Consensus 23 ~kL~~s~VlIvG~GGLGs~va~~LA~a-GVG~i~lvD~D~ 61 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGIHLLTLARL-GIGKFTIADFDV 61 (287)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHh-CCCeEEEEeCCC
Confidence 344567999999999999999999999 86 688888763
No 494
>PRK07831 short chain dehydrogenase; Provisional
Probab=81.44 E-value=1.7 Score=44.73 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=28.2
Q ss_pred cEEEECC-c-HHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGA-S-AAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGS-G-iAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
-|+|+|| | -.|..+|..|+++ |++|++++++.
T Consensus 19 ~vlItG~sg~gIG~~ia~~l~~~-G~~V~~~~~~~ 52 (262)
T PRK07831 19 VVLVTAAAGTGIGSATARRALEE-GARVVISDIHE 52 (262)
T ss_pred EEEEECCCcccHHHHHHHHHHHc-CCEEEEEeCCH
Confidence 6999997 5 5899999999999 99999998763
No 495
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.32 E-value=1.7 Score=50.11 Aligned_cols=31 Identities=13% Similarity=0.332 Sum_probs=28.8
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
-|+|+|.|..|+++|..|.+. |.+|++.|+.
T Consensus 14 ~v~V~G~G~sG~aa~~~L~~~-G~~v~~~D~~ 44 (488)
T PRK03369 14 PVLVAGAGVTGRAVLAALTRF-GARPTVCDDD 44 (488)
T ss_pred eEEEEcCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 599999999999999988888 9999999964
No 496
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=81.30 E-value=1.8 Score=45.34 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=30.5
Q ss_pred CcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccC
Q psy14408 432 DCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG 466 (720)
Q Consensus 432 ~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG 466 (720)
.+.-|+|||.|-.|..+|..||+. |. +++|+|..
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~-GVg~i~LvD~D 44 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARS-GVGKLTLIDFD 44 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHc-CCCEEEEECCC
Confidence 456899999999999999999999 86 78899976
No 497
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.19 E-value=1.7 Score=49.92 Aligned_cols=31 Identities=26% Similarity=0.471 Sum_probs=29.0
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG 466 (720)
-|+|+|.|.+|.++|..|++. |.+|++.|+.
T Consensus 17 ~v~v~G~G~sG~a~a~~L~~~-G~~V~~~D~~ 47 (473)
T PRK00141 17 RVLVAGAGVSGRGIAAMLSEL-GCDVVVADDN 47 (473)
T ss_pred eEEEEccCHHHHHHHHHHHHC-CCEEEEECCC
Confidence 499999999999999999999 9999999974
No 498
>PRK06841 short chain dehydrogenase; Provisional
Probab=81.16 E-value=1.9 Score=43.95 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=28.6
Q ss_pred cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
-|+|+|| |..|..+|.+|+++ |++|+++.|..
T Consensus 17 ~vlItGas~~IG~~la~~l~~~-G~~Vi~~~r~~ 49 (255)
T PRK06841 17 VAVVTGGASGIGHAIAELFAAK-GARVALLDRSE 49 (255)
T ss_pred EEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 4889995 89999999999999 99999999863
No 499
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=81.15 E-value=1.8 Score=46.10 Aligned_cols=32 Identities=9% Similarity=0.250 Sum_probs=29.7
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467 (720)
Q Consensus 435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~ 467 (720)
.|.|||.|..|...|..|++. |++|++.++..
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~-g~~v~~~d~~~ 35 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKA-GYSLVVYDRNP 35 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHC-CCeEEEEcCCH
Confidence 699999999999999999999 99999999863
No 500
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=81.14 E-value=1.5 Score=48.64 Aligned_cols=32 Identities=22% Similarity=0.441 Sum_probs=26.6
Q ss_pred EEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408 436 IIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG 467 (720)
Q Consensus 436 VVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~ 467 (720)
|+|||+|..|-.+|..|+++.+. +|+|.+|..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~ 33 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNP 33 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCH
Confidence 79999999999999999998445 899999863
Done!