RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14408
(720 letters)
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 282 bits (724), Expect = 2e-86
Identities = 84/307 (27%), Positives = 133/307 (43%), Gaps = 24/307 (7%)
Query: 430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG---DTPIHSRIPGMSSVLSLSE 486
+G +D II G G +A +L+E +KVL+IE G + P + +
Sbjct: 21 AGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTT 80
Query: 487 FDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNG 545
D YL P + R I AGKGLGGS+ + + R +++ K+ G G
Sbjct: 81 VDQNYLTVP----LINNR--TNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEG 134
Query: 546 WGYDETLKYFVKSEDYR-------SVIYNESKAVHGTQGYLPVGLFKN-KENNIIREIFE 597
W +D +Y K+E R + ++ + HGT G + G N + + I +
Sbjct: 135 WNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALM 194
Query: 598 TSAQELGYPCPKDMNDRYVDVGFAELPG-MTRYGLRFSAADAYLTPIAGKRTNLYVLKRS 656
+ LG P +D G + + + +R AA A+L P +R+NL +L
Sbjct: 195 NTVSALGVPVQQDFL-CGHPRGVSMIMNNLDENQVRVDAARAWLLPNY-QRSNLEILTGQ 252
Query: 657 KVTKVIINDQN---VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAH 713
V KV+ A GV + +K V A EV+L AG+ + +L SGIG K+
Sbjct: 253 MVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSV 312
Query: 714 LDEVKIP 720
LD+ +
Sbjct: 313 LDQANVT 319
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 276 bits (708), Expect = 5e-84
Identities = 84/307 (27%), Positives = 129/307 (42%), Gaps = 23/307 (7%)
Query: 430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG---DTPIHSRIPGMSSVLSLSE 486
SG D II G G A RL+E ++ VL+IE+G D + S
Sbjct: 16 SGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSS 75
Query: 487 FDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNG 545
DHAY + I +G GLGGS+ V + R +++ + G G
Sbjct: 76 VDHAYETVE---LATNNQ--TALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEG 130
Query: 546 WGYDETLKYFVKSEDYRSVIYNESK-------AVHGTQGYLPVGLFK-NKENNIIREIFE 597
W +D Y +++E R+ + + HG G + G + + I +
Sbjct: 131 WNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALM 190
Query: 598 TSAQELGYPCPKDMNDRYVDVGFAELPG-MTRYGLRFSAADAYLTPIAGKRTNLYVLKRS 656
++ ++ G P KD G + P + +R AA +L P +R NL VL
Sbjct: 191 SAVEDRGVPTKKDFG-CGDPHGVSMFPNTLHEDQVRSDAAREWLLPNY-QRPNLQVLTGQ 248
Query: 657 KVTKVIINDQNV---ATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAH 713
V KV+++ A GVE+ KG T V A EV+L AG+ + +L SGIG K+
Sbjct: 249 YVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSI 308
Query: 714 LDEVKIP 720
L+ + I
Sbjct: 309 LEPLGID 315
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 266 bits (683), Expect = 1e-80
Identities = 90/305 (29%), Positives = 136/305 (44%), Gaps = 27/305 (8%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG--DTPIHSRIP-GMSSVLSLSEFDHA 490
FD ++VGA AG V+A RL+E + VL++EAG + + + P ++ S FD
Sbjct: 3 FDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWN 62
Query: 491 YLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYD 549
Y AG R I G+ LGGSS+V ++ RG++ D++ +A + G GW +D
Sbjct: 63 YTTTAQ--AGYNGR--SIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWD 118
Query: 550 ETLKYFVKSEDY------RSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQEL 603
++ K+E + AVHGT G + + L + + + QE
Sbjct: 119 NIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFP--TPLDDRVLATTQEQ 176
Query: 604 GYPCPK--DMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKV 661
DM +G + G R S++ AYL P A R NL VL ++VTK+
Sbjct: 177 SEEFFFNPDMG-TGHPLGISWSIASVGNGQRSSSSTAYLRP-AQSRPNLSVLINAQVTKL 234
Query: 662 IINDQN------VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLD 715
+ + T V A KEV+L+AG++ LL LSGIG + L
Sbjct: 235 VNSGTTNGLPAFRCVEYAE-QEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLS 293
Query: 716 EVKIP 720
V I
Sbjct: 294 SVGID 298
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 265 bits (679), Expect = 6e-80
Identities = 77/296 (26%), Positives = 123/296 (41%), Gaps = 19/296 (6%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP-----IHSRIPGMSSVLSLSEFD 488
FD +IVG AG +A RL+E ++ VL++EAG P I P + L S++D
Sbjct: 7 FDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEIT--TPSSAMDLRNSKYD 64
Query: 489 HAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGY 548
AY T GK LGGSS++ + G ++ + + G W +
Sbjct: 65 WAYKTTMV--RRDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTW 122
Query: 549 DETLKYFVKSEDYR--SVIYNESKAVHGTQGYLPVGLFKNK-ENNIIREIFETSAQELGY 605
D + Y KS Y +Y+ G G +P+ + E RE + + +G
Sbjct: 123 DPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWKSMGQ 182
Query: 606 PCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIND 665
P +++ D G G R + + N+ ++ ++IIN+
Sbjct: 183 PLIENIYD-GEMDGLTHCCDTIYRGQRSGSFLF-----VKNKPNITIVPEVHSKRLIINE 236
Query: 666 QN-VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720
+ GV V + G + A++EVIL+ G +LL+LSGIGP L I
Sbjct: 237 ADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGIN 292
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 257 bits (660), Expect = 1e-77
Identities = 80/292 (27%), Positives = 126/292 (43%), Gaps = 15/292 (5%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIP-GMSSVLSLSEFDHAY 491
FD I+VG +AG +A RLSE ++ V L+EAG D + + L S +D Y
Sbjct: 14 FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDY 73
Query: 492 LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYEN-FAKLGYNGWGYDE 550
EP N+ ++ K +GG S+ + + D + AK G GW +
Sbjct: 74 PIEPQ--ENG---NSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEA 128
Query: 551 TLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKD 610
+ + E HG G + + + + ++ G P K
Sbjct: 129 AWPLYKRLETNE--DAGPDAPHHGDSGPVHLM--NVPPKDPTGVALLDACEQAGIPRAKF 184
Query: 611 MNDRYVDVGFAELPGMTRY-GLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVA 669
V G R G R S++ +Y+ P ++ N +L + +++ +
Sbjct: 185 NTGTTVVNGANFFQINRRADGTRSSSSVSYIHP-IVEQENFTLLTGLRARQLVFDADRRC 243
Query: 670 TGVEYV-NSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720
TGV+ V ++ G T R+TA EV+L+ GAI +LL+LSGIGP AHL E I
Sbjct: 244 TGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIE 295
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 256 bits (656), Expect = 4e-77
Identities = 92/289 (31%), Positives = 131/289 (45%), Gaps = 15/289 (5%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLSLSEFDHAYL 492
DI+IVG +AG +LA RLSE +VLLIEAG T P L +D Y
Sbjct: 18 CDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWDYR 77
Query: 493 AEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDET 551
E AG R G+ +GGSS + + Y RG D++ + G WG+DE
Sbjct: 78 TEAQ--AGTAGR--AHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDEL 133
Query: 552 LKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDM 611
L F ED+ +HG G LP+ E + + F + LG P +
Sbjct: 134 LPVFQAIEDH----PLGGDGIHGKGGPLPIH-LPADEVSPLARAFIEAGASLGLPRLEGH 188
Query: 612 NDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATG 671
N +G R G R +AADA+LT R NL +L S+V ++ + + N
Sbjct: 189 N-SGEMIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKL-EGNQVRS 246
Query: 672 VEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720
+E V + + V A +++L AGA+ + LL+ SGIGP LD +
Sbjct: 247 LEVV-GRQGSAEVFA-DQIVLCAGALESPALLMRSGIGPHDVLDAAGVG 293
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 241 bits (618), Expect = 1e-71
Identities = 73/304 (24%), Positives = 111/304 (36%), Gaps = 37/304 (12%)
Query: 430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLS--LSE 486
S +D IIVGA G + A+RLSE + KVLL+E GG T S L++
Sbjct: 4 SATPYDYIIVGAGPGGIIAADRLSE-AGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTK 62
Query: 487 FDH-----AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 541
FD + + + + I + AG +GG ++V LY D+
Sbjct: 63 FDIPGLFESLFTDSN--PFWWCK--DITVFAGCLVGGGTSVNGALYWYPNDGDFS----- 113
Query: 542 GYNGW--GYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETS 599
GW + Y K S T G + + N++ ++ +
Sbjct: 114 SSVGWPSSWTNHAPYTSKLSSRLP-----STDHPSTDGQRYL----EQSFNVVSQLLK-- 162
Query: 600 AQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 659
Q D + Y D F G R YL A R N V+
Sbjct: 163 GQGYNQATINDNPN-YKDHVFGYSAFDFLNGKRAGPVATYLQT-ALARPNFTFKTNVMVS 220
Query: 660 KVIINDQNVATGVEYVNS---KGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDE 716
V+ + + GV+ + + VT VIL+AGA +++L SGIGP +
Sbjct: 221 NVVR-NGSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQT 279
Query: 717 VKIP 720
V+
Sbjct: 280 VQSN 283
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 225 bits (576), Expect = 1e-65
Identities = 73/293 (24%), Positives = 114/293 (38%), Gaps = 42/293 (14%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 493
+D +IVG +GC LA LSE KVL++E G + + + + +
Sbjct: 27 YDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKT 84
Query: 494 EPSQFA-GLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETL 552
+F G+ N R G+ LGG+S + +Y R + Y W D
Sbjct: 85 PVERFVSEDGIDNVR-----GRVLGGTSIINAGVYARANTSIYSASGV----DWDMDLVN 135
Query: 553 KYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMN 612
+ + ED ++ + F + + +
Sbjct: 136 QTYEWVEDTI--------VYKPNSQSW---------QSVTKTAFLEAGVHPNH----GFS 174
Query: 613 DRYVDVGFAELPGMT-RYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQ--NVA 669
+ + G + G T AAD L G NL V + V K+I ++ A
Sbjct: 175 LDHEE-GTR-ITGSTFDNKGTRHAADELLNK--GNSNNLRVGVHASVEKIIFSNAPGLTA 230
Query: 670 TGVEYVNSKG--ETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720
TGV Y +S G V + EVI++AG I QLLLLSG+GP+++L + IP
Sbjct: 231 TGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIP 283
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 97.8 bits (243), Expect = 2e-21
Identities = 52/321 (16%), Positives = 101/321 (31%), Gaps = 53/321 (16%)
Query: 430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG----GDTPIHSRIPGMSSVLS-L 484
+G +++G V A RL E + ++ L++E G P + GM +
Sbjct: 2 NGGYVPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRS 60
Query: 485 SEFDHAYLAEPSQFAGLGVRNAR---------------IKITAGKGLGGSSAVQNILYQR 529
S F + A F L V N + + G+G+GG S V +
Sbjct: 61 SWFKNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVE 120
Query: 530 GTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKEN 589
+E E + + + ++ F++ E
Sbjct: 121 PKRSYFEEIL----PRVDSSEMYDRY----------FPRANSMLRVNHIDT-KWFEDTEW 165
Query: 590 NIIREIFETSAQELGYPC---------PKDMNDRYVDVGFAELPGMTRYGLR---FSAAD 637
+ A + G + +V + L YG S
Sbjct: 166 YKFARVSREQAGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDK 225
Query: 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNV-ATGVEYVNSKGETV--RVTANKEVILTA 694
YL A + + +V + A VE ++ G+ + + + + + L A
Sbjct: 226 TYL-AAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGA 284
Query: 695 GAIANAQLLLLSGI-GPKAHL 714
G++ + +LL+ + G +L
Sbjct: 285 GSLGSTELLVRARDTGTLPNL 305
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 90.6 bits (224), Expect = 3e-19
Identities = 55/318 (17%), Positives = 96/318 (30%), Gaps = 52/318 (16%)
Query: 424 MTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG--DTP----------- 470
GD +++G+ G V A RL++ + + ++E G DTP
Sbjct: 3 SRTL-ADGDRVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGML 60
Query: 471 ------IHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQN 524
+ V + F + R + IK+ G+G+GG S V
Sbjct: 61 NPDKRSMWLADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNG 120
Query: 525 ILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLF 584
+ +E + KYF ++ G F
Sbjct: 121 GMAVTPKRNYFEEILPS---VDSNEMYNKYFPRAN-----------TGLGVNNIDQ-AWF 165
Query: 585 KNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTR------------YGLR 632
++ E +AQ G+ N + E G +
Sbjct: 166 ESTEWYKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGK 225
Query: 633 FSAADAYLTPIAGKRTNLYVLKRSKVTKVII-NDQNVATGVEYVNSKGETV--RVTANKE 689
S YL A L + +VTKV + +E ++ +G V +V
Sbjct: 226 KSLDKTYL-AQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADR 284
Query: 690 VILTAGAIANAQLLLLSG 707
V AG++ ++LL+
Sbjct: 285 VFFAAGSVGTSKLLVSMK 302
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 81.0 bits (199), Expect = 5e-16
Identities = 47/361 (13%), Positives = 93/361 (25%), Gaps = 47/361 (13%)
Query: 377 PENPNSPYNPFNENSLYHPGNPDSP-YDWQRLEKERYNIYRSVIYPPDMTPYVKSGDCFD 435
+ + P+ F ++S + L P M +D
Sbjct: 2 STSSSDPFFNFAKSSFRSAAAQKASASSLPPLPGPDKK-------VPGMDI------KYD 48
Query: 436 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLS----LSEFDHAY 491
++IVG+ GC A L + KV + + G + + + +F +
Sbjct: 49 VVIVGSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVI 107
Query: 492 LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGY------NG 545
+ + ++ + V+N + +
Sbjct: 108 QGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTA 167
Query: 546 WG------YDETLKYFVKSEDYRS-----VIYNESKAVHGTQGYLPVGLFKNKENNIIRE 594
W E VK + +Y ++++ T IR
Sbjct: 168 WTCATPRFDREQRPLLVKDDADADDAEWDRLYTKAESYFQTGTDQFKE--------SIRH 219
Query: 595 IFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLK 654
+ Y +D + + +
Sbjct: 220 NLVLNKLTEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNLFP 279
Query: 655 RSKVTKVIINDQN-VATGVEYVNSK-GETVRVTANKEVILTAGAIANAQLLLLSGIGPKA 712
+V+ N N + + G+ + A +LTAGA+ N QLL+ SG G
Sbjct: 280 AVACERVVRNALNSEIESLHIHDLISGDRFEIKA-DVYVLTAGAVHNTQLLVNSGFGQLG 338
Query: 713 H 713
Sbjct: 339 R 339
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 77.8 bits (191), Expect = 9e-15
Identities = 95/330 (28%), Positives = 126/330 (38%), Gaps = 72/330 (21%)
Query: 62 PYSNTDDIYNPFSPINQYSPYSPYNTDSLFDNTHPESLLNPYNPESLLSPLNP-RSVFYP 120
PY + + + F + +SP + Y SP +S Y
Sbjct: 1485 PYERSPMVDSGFVGSPDAAAFSPLVQGG----SEGREGFGDYGLLGAASPYKGVQSPGYT 1540
Query: 121 SNPEVPSFDYNNPNSPFNPYNPSSVFNPKNIDSVFNPRNPDSPYYNQYQFLYSPLSPYNP 180
S SP Y+PSS P SP Y YSP SP
Sbjct: 1541 SPFSSAMSPGYGLTSP--SYSPSS------------PGYSTSPAYMPSSPSYSPTSP--- 1583
Query: 181 RSLFSSQNPLSPLSPLNANSPYNPRNQISYYNIENPKSPYNIHNPESPLYS-DSPYYYRN 239
SP SP + SP +P SY +P SP ++ SP YS SP Y
Sbjct: 1584 --------SYSPTSP--SYSPTSP----SY----SPTSPS--YSATSPSYSPTSPSYSPT 1623
Query: 240 LPLYNPVETELIDQYS-TSVYNNPDSP-LSINSPHSVLNPYNLDSILNPFNVKSP-LSPE 296
P Y+P YS TS +P SP S SP + ++ SP SP
Sbjct: 1624 SPSYSPTSP----SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1679
Query: 297 NPA-SPFNP-YNP-EPSIFDSHNIYSFFSPHNPYSPFNP-YNIDSPFNSDNPDSPFRNYP 352
+P+ SP +P Y+P PS + YS SP YSP +P Y+ SP S +P SP
Sbjct: 1680 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSP--SYSPTSP----- 1730
Query: 353 QYSRYNPKNPE-SPFSPQNEDSIYNPENPN 381
Y+P +P SP SP Y+P +P+
Sbjct: 1731 ---SYSPTSPSYSPTSPS-----YSPTSPS 1752
Score = 75.1 bits (184), Expect = 6e-14
Identities = 92/316 (29%), Positives = 124/316 (39%), Gaps = 60/316 (18%)
Query: 83 SPYNTDSLFDNTHPESLLNPYNPESLLSPLNPRSVFYPSNPEVPSFDYNNPNSPFNPYNP 142
+PY + D+ S + SPL +PY
Sbjct: 1484 TPYERSPMVDSGFVGS-----PDAAAFSPLVQGGSEGREGFGDYG-----LLGAASPYKG 1533
Query: 143 SSVFNPKNIDSVFNPRNPDSPYYNQYQFLYSPLSPYNPRS-LFSSQNP-LSPLSP-LNAN 199
+P + SP Y YSP SP S + +P SP SP +
Sbjct: 1534 V--QSPGYTS---PFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPT 1588
Query: 200 SP-YNPRNQISYYNIENPKSPYNIHNPESPLYS-DSPYYYRNLPLYNPVETELIDQYS-T 256
SP Y+P + Y +P SP ++ SP YS SP Y P Y+P YS T
Sbjct: 1589 SPSYSPTS--PSY---SPTSPS--YSATSPSYSPTSPSYSPTSPSYSPTSP----SYSPT 1637
Query: 257 SVYNNPDSP-LSINSPHSVLNPYNLDSILNPFNVKSPLSPE-NPASP-FNPYNPEPSIFD 313
S +P SP S SP +P + SP SP +P SP ++P +P S
Sbjct: 1638 SPSYSPTSPSYSPTSPSY--SPTS--------PSYSPTSPSYSPTSPSYSPTSPSYSPTS 1687
Query: 314 SHNIYSFFSPHNPYSPFNP-YNIDSPFNSDNPDSPFRNYPQYSRYNPKNPE-SPFSPQNE 371
YS SP YSP +P Y+ SP S P SP + P Y+P +P SP SP
Sbjct: 1688 PS--YSPTSP--SYSPTSPSYSPTSPSYS--PTSPSYS-PTSPSYSPTSPSYSPTSPS-- 1738
Query: 372 DSIYNPENPN-SPYNP 386
Y+P +P+ SP +P
Sbjct: 1739 ---YSPTSPSYSPTSP 1751
Score = 69.7 bits (170), Expect = 3e-12
Identities = 69/271 (25%), Positives = 97/271 (35%), Gaps = 47/271 (17%)
Query: 139 PYNPSSVFNPKNIDSVFNPRNPDSPYYNQYQFLYSPLSPYNPRSLFSSQNPLSPLSPLNA 198
PY S + + + S SP Y S SP
Sbjct: 1485 PYERSPMVDSGFVGS--PDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKG--VQSP-GY 1539
Query: 199 NSPYNPRNQISYYNIENPKSPYNIHNPESPLYSDSPYYYRNLPLYNPVETELIDQYSTSV 258
SP++ Y SP ++P SP YS SP Y + P Y+P TS
Sbjct: 1540 TSPFSSAMSPGY----GLTSP--SYSPSSPGYSTSPAYMPSSPSYSPTSPSY---SPTSP 1590
Query: 259 YNNPDSPLSINSPHSVLNPYNLDSILNPFNVKSPLSPENPASPFNP-YNPEPSIFDSHNI 317
+P SP +S +P S SP SP +P Y+P + +
Sbjct: 1591 SYSPTSP-----SYSPTSPSY-----------SATSPSY--SPTSPSYSPTSPSYSPTSP 1632
Query: 318 YSFFSPHNP-YSPFNP-YNIDSPFNSDNPDSPFRNYPQYS----RYNPKNPE-SPFSPQN 370
+SP +P YSP +P Y+ SP S S P YS Y+P +P SP SP
Sbjct: 1633 S--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS- 1689
Query: 371 EDSIYNPENPNSPYNPFNENSLYHPGNPDSP 401
Y+P +P+ + + +P SP
Sbjct: 1690 ----YSPTSPSYSPTSPSYSPTSPSYSPTSP 1716
Score = 38.9 bits (90), Expect = 0.006
Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 13/137 (9%)
Query: 269 NSPHSVLNPYNLDSILNPFNVKSPLSPENPASPFNP-YNPEPSIFDSHNIYSFFSPH-NP 326
P PY +++ V SP SP + F + + SP+
Sbjct: 1477 QLPEGAGTPYERSPMVDSGFVGSP--DAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGV 1534
Query: 327 YSPFNPYNIDSPFNSDNPDSPFRNYPQYSRYNPKNPESPFSPQNEDSIYNPENPN-SPYN 385
SP S + + P Y+ P SP Y+P +P+ SP +
Sbjct: 1535 QSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPS-----YSPTSPSYSPTS 1589
Query: 386 P-FNENSLYHPGNPDSP 401
P ++ S + +P SP
Sbjct: 1590 PSYSPTSPSY--SPTSP 1604
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 61.6 bits (149), Expect = 8e-10
Identities = 86/331 (25%), Positives = 119/331 (35%), Gaps = 60/331 (18%)
Query: 88 DSLFDNTHPESLLNPYNPESLLSPLNPRSVFYPSNPEVPSFDYNNP-NSPFNPYNPSSVF 146
D + D + + + Y + + + D + F+P S
Sbjct: 1442 DVMIDEESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSN 1501
Query: 147 NPKNIDSVFNPRNPDSPYYNQYQFLYSPLSPYNPRSLFSSQNPLSPLSPLNANSPYNPRN 206
+ F F +P +P SS SP SP SP +P
Sbjct: 1502 DAMA--GGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGF-SPTSP--TYSPTSP-- 1554
Query: 207 QISYYNIENPKSPYNIHNPESPLYS-DSPYYYRNLPLYNPVETELIDQYSTSVYNNPDSP 265
+Y P SP ++P SP YS SP Y P Y+P TS +P SP
Sbjct: 1555 --AYS----PTSPS--YSPTSPSYSPTSPSYSPTSPSYSP----------TSPSYSPTSP 1596
Query: 266 LSINSPHSVLNPYNLDSILNPFNVKSPLSPE-NPASP-FNPYNPEPSIFDSHNIYSFFSP 323
SP S S SP SP +P SP ++P +P S YS SP
Sbjct: 1597 SY--SPTSPSYSPTSPSY-------SPTSPSYSPTSPSYSPTSPSYSPTSPS--YSPTSP 1645
Query: 324 HNPYSPFNP-YNIDSPFNSDNPDSPFRNYPQYS----RYNPKNP-ESPFSPQNEDSIYNP 377
YSP +P Y+ SP S S P YS Y+P +P SP SP Y+P
Sbjct: 1646 S--YSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPN-----YSP 1698
Query: 378 E----NPNSP-YNPFNENSLYHPGNPDSPYD 403
+P SP Y+P + Y P + ++
Sbjct: 1699 TSPSYSPTSPGYSP--GSPAYSPKQDEQKHN 1727
Score = 58.6 bits (141), Expect = 7e-09
Identities = 72/253 (28%), Positives = 98/253 (38%), Gaps = 52/253 (20%)
Query: 62 PYSNTDDIYNPFSPINQYSPYSPYNTDSLFDNTHPESLLNPYNPESLLSPLNPRSVFYPS 121
+ T + SP +SP SP + P S Y+P S +P S Y
Sbjct: 1527 GEAPTSPGFGVSSPG--FSPTSPTYS--------PTS--PAYSPTS--PSYSPTSPSY-- 1570
Query: 122 NPEVPSFDYNNPNSPFNPYNPSSVFNPKNIDSVFNPRNPDSPYYNQYQFLYSPLSP-YNP 180
+P PS+ +P ++P +PS +P SP Y+ YSP SP Y+P
Sbjct: 1571 SPTSPSYSPTSP--SYSPTSPSYSPTS-------PSYSPTSPSYSPTSPSYSPTSPSYSP 1621
Query: 181 RSLFSSQNPLSPLSPLNANSPYNPRNQISYYNIENPKSPYNIHNPESPLYSD-SPYYYRN 239
S S +P SP + SP SY +P SP ++P SP YS SP Y
Sbjct: 1622 TS--PSYSPTSP--SYSPTSPSYSPTSPSY----SPTSPS--YSPTSPAYSPTSPSYSPT 1671
Query: 240 LPLYNPVETELIDQYSTSVYNNPDSPL-SINSPHSVLNPYNLDSILNPFNVKSPLSPE-N 297
P Y+P TS +P SP S SP Y+ S SP SP +
Sbjct: 1672 SPSYSPTSP---SYSPTSPSYSPTSPNYSPTSPS-----YSPTSPGY-----SPGSPAYS 1718
Query: 298 PASPFNPYNPEPS 310
P +N +
Sbjct: 1719 PKQDEQKHNENEN 1731
Score = 55.9 bits (134), Expect = 4e-08
Identities = 56/189 (29%), Positives = 77/189 (40%), Gaps = 32/189 (16%)
Query: 63 YSNTDDIYNPFSPINQYSPYSPY--NTDSLFDNTHPESLLNPYNPES-LLSPLNPRSVFY 119
YS T Y+P SP YSP SP T + T P Y+P S SP +P +
Sbjct: 1570 YSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPS-----YSPTSPSYSPTSPS--YS 1620
Query: 120 PSNPEVPSFDYNNPNSPFNPYNPSSVFNPKNIDSVFNPRNPDSPYYNQYQFLYSPLSP-Y 178
P++P Y+ + ++P +PS + +P SP Y+ YSP SP Y
Sbjct: 1621 PTSPS-----YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSY 1675
Query: 179 NPRSLFSS--QNPLSPLSPLNANSPYNPRNQISYYNIENPKSPYNIHNPESPLYSDSPYY 236
+P S S SP SP SP +P P SP ++P SP YS
Sbjct: 1676 SPTSPSYSPTSPSYSPTSP--NYSPTSPSYS--------PTSP--GYSPGSPAYSPKQDE 1723
Query: 237 YRNLPLYNP 245
++ N
Sbjct: 1724 QKHNENENS 1732
Score = 51.2 bits (122), Expect = 1e-06
Identities = 62/281 (22%), Positives = 88/281 (31%), Gaps = 56/281 (19%)
Query: 127 SFD--YNNPNSPFNPYNPSSVFNPKNIDSVFNPRNPDSPYYNQYQFLYSPL--SPYNPRS 182
+FD + + D P + +S N + L SP
Sbjct: 1440 AFDVMIDEESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSG 1499
Query: 183 LFSSQNP-LSPLSPLNANSPYNPRNQISYYNIENPKSPYNIHNPESPLYS-DSPYYYRNL 240
+ + + +P P SP SP +S SP Y
Sbjct: 1500 SNDAMAGGFTAYGGADYGEATSPFGAYGEA----PTSPG--FGVSSPGFSPTSPTYSPTS 1553
Query: 241 PLYNPVETELIDQYSTSVYNNPDSP-LSINSPHSVLNPYNLDSILNPFNVKSPLSPENPA 299
P Y+P TS +P SP S SP SP SP
Sbjct: 1554 PAYSP----------TSPSYSPTSPSYSPTSPSY-----------------SPTSP---- 1582
Query: 300 SPFNPYNPEPSIFDSHNIYSFFSPHNP-YSPFNP-YNIDSPFNSDNPDSPFRNYPQYSRY 357
++P +P S +SP +P YSP +P Y+ SP S P SP P Y
Sbjct: 1583 -SYSPTSPSYS-----PTSPSYSPTSPSYSPTSPSYSPTSPSYS--PTSP-SYSPTSPSY 1633
Query: 358 NPKNPESPFSPQNEDSIYNPENPNSPYNPFNENSLYHPGNP 398
+P +P + + +P SP S Y P +P
Sbjct: 1634 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPS-YSPTSP 1673
Score = 33.1 bits (75), Expect = 0.39
Identities = 38/126 (30%), Positives = 54/126 (42%), Gaps = 18/126 (14%)
Query: 63 YSNTDDIYNPFSPINQYSPYSPYNTDSLFDNTHPESLLNP----YNPESLLSPLNPRSVF 118
YS T Y+P SP YSP SP + + + +P Y+P S +P S
Sbjct: 1619 YSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS--PSYSPTSPS 1674
Query: 119 Y-PSNPE-VPSFDYNNPNSPFNPYNPSSVFNPKNIDSVFNPR-NPDSPYYNQYQFLYSPL 175
Y P++P P+ +P SP Y+P+S P S +P +P SP Y+ Q
Sbjct: 1675 YSPTSPSYSPTSPSYSPTSP--NYSPTS---PSY--SPTSPGYSPGSPAYSPKQDEQKHN 1727
Query: 176 SPYNPR 181
N R
Sbjct: 1728 ENENSR 1733
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 49.7 bits (118), Expect = 1e-06
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 396 GNPDSPYDWQRLE----KERYNIYRSVI--YPPDMTPYVKSGDCFDIIIVGASAAGCVLA 449
G + YD KE + R + Y DM Y + D+++VGA +AG A
Sbjct: 1 GRGSAGYDLNAFTFDPIKES-IVSREMTRRYMTDMITYAE----TDVVVVGAGSAGLSAA 55
Query: 450 NRLSEVSSLKVLLIEAG 466
+S+ +++V +IE
Sbjct: 56 YEISKNPNVQVAIIEQS 72
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 47.0 bits (112), Expect = 2e-05
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 652 VLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAI-ANAQLL 703
S+V K+++ND + G + A K V+L G N +++
Sbjct: 267 TRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGA-KSVVLATGGYGMNKEMI 318
Score = 34.3 bits (79), Expect = 0.16
Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIE----AGGDT 469
+++VGA +AG + + + V+L++ +GG++
Sbjct: 122 TQVLVVGAGSAGFNASLAAKK-AGANVILVDKAPFSGGNS 160
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 46.2 bits (110), Expect = 3e-05
Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 8/80 (10%)
Query: 623 LPGMT-RYGLRFSAAD----AYLTPIAG--KRTNLYVLKRSKVTKVIINDQNVATGVEYV 675
+ G + R + + + + N+ + ++ +V+ +D+ G+
Sbjct: 236 MGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVK 295
Query: 676 NSKGETVRVTANKEVILTAG 695
V A VIL G
Sbjct: 296 GMYKGYYWVKA-DAVILATG 314
Score = 35.8 bits (83), Expect = 0.049
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIE----AGGDT 469
D+++VG+ AG A ++ S KV+LIE GG+
Sbjct: 127 VDVVVVGSGGAGFSAAISATD-SGAKVILIEKEPVIGGNA 165
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 4e-05
Identities = 80/429 (18%), Positives = 130/429 (30%), Gaps = 127/429 (29%)
Query: 134 NSPFNPYNPSSVF-----NPKNIDSVFNPRNPDSPYYNQYQFLYSPLSPYNP--RSLF-S 185
PF+ + S++F + ++F + Y+ + + LY Y+ L
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY---QTYHVLVGDLIKF 190
Query: 186 SQNPLSPLS--PLNANSPYNPRNQISYYNIEN--------PKSPYNIHNPES-P---LYS 231
S LS L L+A + + NI P Y + P S P +
Sbjct: 191 SAETLSELIRTTLDAEKVF-TQG----LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ 245
Query: 232 DSPYYY--RNLPLYNPVETELIDQYST---------------------SVYNNPDSPLSI 268
+ Y + L + P EL S + + +++
Sbjct: 246 LAHYVVTAKLLG-FTP--GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 269 ----------NSPHSVLNPYNL-DSILNPFNVKSP------LSP---ENPASPFNPYNPE 308
P++ L P L DS+ N V SP L+ ++ + N + P
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 309 PS-IFDS-HNIYSFFSPHN------PYS--PFNPY--NIDSPFNSDNPDSPF--RNYPQY 354
+ S N N P S N +P D PF R
Sbjct: 363 GKQVEISLVN-----GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFS 417
Query: 355 SRYNPKNPESPF-SPQNEDSIYNPENPNSPYN-PFNENSL----YHPGNPDSPYDWQRLE 408
+R+ P SPF S + N FN + Y +D L
Sbjct: 418 NRFLPVA--SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD------TFDGSDLR 469
Query: 409 KERYNIYRSVI-----YPPDMTPYVKSGDCFDI--IIV----GASAAGCVLANRLSEVSS 457
+I ++ P + F I+ GAS G VL +R + +
Sbjct: 470 VLSGSISERIVDCIIRLPVKWETTTQ----FKATHILDFGPGGASGLG-VLTHRNKDGTG 524
Query: 458 LKVLLIEAG 466
++V I AG
Sbjct: 525 VRV--IVAG 531
Score = 45.4 bits (107), Expect = 6e-05
Identities = 70/413 (16%), Positives = 120/413 (29%), Gaps = 133/413 (32%)
Query: 19 SRF-SFQSKFSVQPLEPQLTIQQ-KLALKSFQPKLLLQSKIFDI------IPYSNTDDIY 70
+F + S V+P + Q L L F+ L + DI + N +
Sbjct: 62 GKFLGYVSS-LVEPSKVGQFDQVLNLCLTEFENCYLEGN---DIHALAAKLLQENDTTLV 117
Query: 71 NPFSPINQY--------SPYSPYNTDSLFDNTHPESLLNPY-------NPESLLSPLNPR 115
I Y P+ + +LF E N + L R
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAV-GEGNAQLVAIFGGQGNTDDYFEEL--R 174
Query: 116 SVFYPSNPEVPSF-----DYNNPNSPFNPYNPSSVFNPKNIDSV---FNP-RNPDSPYYN 166
++ + V + + + VF + ++ + NP PD Y
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIR-TTLDAEKVF-TQGLNILEWLENPSNTPDKDY-- 230
Query: 167 QYQFLYSPLS-P------------------YNPRSLFS--------SQNPLSPLSPLNAN 199
L P+S P + P L S SQ ++ ++ +
Sbjct: 231 ---LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD 287
Query: 200 SP---YNP-------------RNQISYYNIENP-----KSPYNIHNPESPLYSDSPYYYR 238
S + R +Y N P S N SP+ S
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS-----IS 342
Query: 239 NLPLYNPVETELIDQYSTSVYNNPDSPLSI---NSP-HSVL--NP---YNLDSILNPFNV 289
NL V+ + +++ T+ + + I N + V+ P Y L+ L
Sbjct: 343 NLTQ-EQVQ-DYVNK--TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR--KA 396
Query: 290 KSPLSPENPASPFNPYNPEPSIFDSHNIYSFFSPHNPYSPFNPYNIDSPFNSD 342
K+P + PF+ + S + F P + SPF+S
Sbjct: 397 KAPSGLDQSRIPFSERKLKFS-----------------NRFLP--VASPFHSH 430
Score = 45.4 bits (107), Expect = 7e-05
Identities = 53/283 (18%), Positives = 88/283 (31%), Gaps = 88/283 (31%)
Query: 473 SRIPGMSSVL--SLSEFDHAYLA-----------EPSQFAGLGVRNARIK------ITAG 513
S++ VL L+EF++ YL L IK I A
Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK 134
Query: 514 KGL--GGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKA 571
+ +SA L++ + + A G G G + YF E+ R +Y
Sbjct: 135 RPFDKKSNSA----LFRAVGEGNAQLVAIFG--GQGNTDD--YF---EELRD-LYQT--- 179
Query: 572 VHGTQGYLPVGLFKNKENNIIREIFETSAQELGY--PCPKDMNDRY---VDV-GFAELPG 625
Y ++ ++ + SA+ L D + +++ + E P
Sbjct: 180 ------YHV----------LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 626 MTRYGLRFSAADAYLT--PIAGKRTNLYVLKRSKVT-KVIINDQNVATGVEYVNSKGETV 682
T YL PI+ + L VT K++ G KG T
Sbjct: 224 NT-------PDKDYLLSIPISCPLIGVIQLAHYVVTAKLL----GFTPGELRSYLKGATG 272
Query: 683 RVTANKEVILTAGAIANAQ------------LLLLSGIGPKAH 713
++TA AIA + +L IG + +
Sbjct: 273 HSQG----LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY 311
Score = 39.3 bits (91), Expect = 0.005
Identities = 71/524 (13%), Positives = 134/524 (25%), Gaps = 191/524 (36%)
Query: 196 LNANS--PYNPRNQISYYNIENPKS-PYNIHNPESPLYSDSPYYYRNLPLYNPVETELID 252
++A S P +S+ ++E+ P S L + + LP P E D
Sbjct: 1 MDAYSTRPL----TLSHGSLEHVLLVPTASFFIASQLQEQ---FNKILP--EPTEGFAAD 51
Query: 253 QYSTSV---------Y-NNPDSPLSINSPHSVLNPYNLDSILNPFNVKSPLSPENPASPF 302
T+ Y ++ P + VLN L F
Sbjct: 52 DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLN-----LCLTEF--------------- 91
Query: 303 NPYNPEPSIFDSHNIYSF---FSPHNPYSPFNPYNIDSPFNSDNPDSPFRNYPQYS---- 355
E + ++I++ N + + +NY +
Sbjct: 92 -----ENCYLEGNDIHALAAKLLQENDTTLVKTKEL------------IKNY--ITARIM 132
Query: 356 --RYNPKNPESPFSPQNEDSIYNPENPNSPYNPFNENSLYHP----GNPDSPYDWQRLE- 408
R K S + L GN D ++ E
Sbjct: 133 AKRPFDKKSNSALFRAVGE---------------GNAQLVAIFGGQGNTDDYFE----EL 173
Query: 409 KERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468
++ Y Y V D+I + L+ + + + G +
Sbjct: 174 RDLYQTYH---------VLVG-----DLI----KFSAETLSELIRTTLDAEKVF-TQGLN 214
Query: 469 TPIHSRIPGMSSVLSLSEFDHAYLAEP----SQFA---------GLGVRNARIKITA--- 512
I + S+ ++ P Q A G R +
Sbjct: 215 --ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 513 -GKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKY--FVKSEDYRSVIYNES 569
+GL + A+ + +E+F + + F+
Sbjct: 273 HSQGLVTAVAIA-------ETDSWESFFVS------VRKAITVLFFI------------- 306
Query: 570 KAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRY 629
V + Y L +I+ + E + G P P M + +
Sbjct: 307 -GVRCYEAYPNTSL----PPSILEDSLENNE---GVPSP--M----LSIS---------- 342
Query: 630 GLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN--DQNVATG 671
L Y+ +TN ++ +V ++N V +G
Sbjct: 343 NLTQEQVQDYV-----NKTNSHLPAGKQVEISLVNGAKNLVVSG 381
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 44.7 bits (106), Expect = 8e-05
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 652 VLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAI-ANAQLL 703
+ S+V +++ + TGV + A V++ AG N + +
Sbjct: 272 IRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKA-DAVVIAAGGFAKNNERV 323
Score = 35.1 bits (81), Expect = 0.083
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIE----AGGDT 469
D++I+G+ AG A + + KV+L+E GG+T
Sbjct: 127 TDVVIIGSGGAGLAAAVSARD-AGAKVILLEKEPIPGGNT 165
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 1e-04
Identities = 84/641 (13%), Positives = 171/641 (26%), Gaps = 187/641 (29%)
Query: 142 PSSVFNPKNIDSVFNPRNPDSPYY-----------------------NQYQFLYSPLS-- 176
P S+ + + ID + ++ S Y+FL SP+
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101
Query: 177 ---PYNPRSLFSSQ-NPLSPLSPLNANSPYNPRNQISYYNIENPKSPYNIHNPESPLYSD 232
P ++ Q + L N N + YN+ + + L
Sbjct: 102 QRQPSMMTRMYIEQRDRLY-----NDNQVFAK------YNVSRLQPYLKLRQ---ALLEL 147
Query: 233 SPYYYRNLPLYNPV---ETELIDQ--YSTSVYNNPDSP---LSI---NSPHSVLNPY-NL 280
P +N+ + + +T + S V D L++ NSP +VL L
Sbjct: 148 RP--AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 281 DSILNPFNVKSPLSPENPASPFNPYNPEPSIFDSHNIYSFFSPH------NPYSP--FNP 332
++P N + E Y + N + +N
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY----ENCLLVLLNVQNAKAWNA 261
Query: 333 YNIDSPF-----NSDNPDSPFRNYPQYSRYNPKNPESPFSPQNEDSIY----NPENPNSP 383
+N+ D F + + + + +P S+ + + P
Sbjct: 262 FNLSCKILLTTRFKQVTD--FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 384 YNPFNENSLYHPGNP-----------DSPYDWQRLEKERYNIYRSVI-------YPPDMT 425
NP D W + + ++I P +
Sbjct: 320 -------REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 426 PYVKSGDCF--DIIIVGASAAGCVLANRLSEVSSLKVL-------LIEAGGDTPIHSRIP 476
F I + ++ + + + V+ L+E S IP
Sbjct: 373 KMFDRLSVFPPSAHI--PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS-IP 429
Query: 477 GMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYE 536
+ YL + + I + Y ++D +
Sbjct: 430 SI------------YLELKVKLENEYALHRSI-VDH--------------YNIPKTFDSD 462
Query: 537 NFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHG------TQGYLPVGLFKNKENN 590
+ + YF Y + ++ H +L + K
Sbjct: 463 DLIPPYLDQ--------YF-----YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK--- 506
Query: 591 IIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSA-ADAYLTPIAGKRTN 649
IR + + + + F + P + ++ +A L + N
Sbjct: 507 -IR------HDSTAWNASGSILNTLQQLKFYK-PYICDNDPKYERLVNAILDFLPKIEEN 558
Query: 650 LYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEV 690
L SK T ++ + +A + ++ E + A+K+V
Sbjct: 559 LI---CSKYTDLL---R-IA-----LMAEDEAIFEEAHKQV 587
Score = 38.7 bits (89), Expect = 0.008
Identities = 87/670 (12%), Positives = 180/670 (26%), Gaps = 214/670 (31%)
Query: 44 LKSFQPKLLLQSKIFD----------IIPYSNTDDIYNPFSPINQYSPYSPYNTDSLFD- 92
L F+ + FD I+ D I ++ T LF
Sbjct: 22 LSVFEDAFV---DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG--------TLRLFWT 70
Query: 93 -NTHPES--------LLNPYNPESLLSPLNPRSVFYPSNPEVPSFDYN-------NPNSP 136
+ E +L N + L+SP+ P + + Y N N
Sbjct: 71 LLSKQEEMVQKFVEEVLRI-NYKFLMSPIKTE----QRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 137 FNPYNPSSVFNPKNIDSVFNPRNPDSPYYNQYQFLY------------SPLSPYNPRSLF 184
F YN V + + P + + Y +
Sbjct: 126 FAKYN---VSRLQPYLKLRQALLELRP--AKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 185 SSQNPLSPLSPLNANSPYNPRNQISYYNIENPKSP-------YNIHNPESPLYSDSPYYY 237
+I + N++N SP + P ++ +
Sbjct: 181 D--------------------FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 238 RNLPL-YNPVETELIDQYSTSVYNNPDSPLSINSPHSVLNPYNLD-----SILNPFNVKS 291
N+ L + ++ EL + Y N L + L N FN+
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYEN---CLLV-----------LLNVQNAKAWNAFNLSC 266
Query: 292 P--LSPENPASPFNPYNPEPSIFD--SHNIYSFFSPHNPYSPFNPYNIDSPF----NSDN 343
L+ + D S + S + P + S +
Sbjct: 267 KILLTTRF-----------KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 344 PDSPFRNYPQYSRYNPKNPESPFSPQNEDSIYNPEN-PNSPYNPFN---ENSLYHPGNPD 399
D P + NP+ S + D + +N + + E+SL N
Sbjct: 316 QDLP----REVLTTNPRRL-SIIAESIRDGLATWDNWKHVNCDKLTTIIESSL----NVL 366
Query: 400 SPYDWQRLEKERYNIYRS-VIYPPD--MTPYV--------KSGDCFDII--IVGASAAGC 446
P +++++ + ++PP + + D ++ + S
Sbjct: 367 EPAEYRKM-------FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 447 VLANRLSEVSSLKV-LLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQ----FAGL 501
+ S+ + L ++ + +H I + FD L P ++ +
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSI--VDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 502 G--VRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENF--AKLGYNG--WGYDETL--- 552
G ++N + +++ D+ F K+ ++ W ++
Sbjct: 478 GHHLKNIE--------HPERMTLFRMVFL-----DF-RFLEQKIRHDSTAWNASGSILNT 523
Query: 553 --------KYFVKSEDYRSVIYNESK---AVHGTQGYLPVGLFKNKENNIIR-------- 593
Y ++ + N L +K +++R
Sbjct: 524 LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN------LICSKYTDLLRIALMAEDE 577
Query: 594 EIFETSAQEL 603
IFE + +++
Sbjct: 578 AIFEEAHKQV 587
Score = 36.4 bits (83), Expect = 0.041
Identities = 56/451 (12%), Positives = 108/451 (23%), Gaps = 145/451 (32%)
Query: 235 YYYRN-LPLYNPVETELIDQYSTSVYNNPDSPLSI----------NSPHSVLNPYNLDSI 283
Y Y++ L ++ + D + D P SI S +V L
Sbjct: 16 YQYKDILSVFEDAFVDNFD-----CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 284 LNPFNVKSPLSPENPASPFNPYNPEPSIFDSHNI-YSFFSPHNPYSPFNPYNIDSPFNSD 342
L E F + + I Y F SP
Sbjct: 71 LL-------SKQEEMVQKF--------VEEVLRINYKFL-----MSPI----------KT 100
Query: 343 NPDSPFRNYPQYSRYNPKNPESPFSPQNEDSIYNPENPNSPYN-----PFNE--NSLYHP 395
P Y D +YN + YN P+ + +L
Sbjct: 101 EQRQPSMMTRMYIEQ-------------RDRLYNDNQVFAKYNVSRLQPYLKLRQALLE- 146
Query: 396 GNPDSPYDW-----------QRLEKERYNIYRSVIYPPDMTPYVKSGDCF---DIIIVGA 441
P + + Y+ ++ +C ++
Sbjct: 147 ---LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE--- 200
Query: 442 SAAGCVLANRLSEVSSLKVLLIEAGGDTP--IHSRIPGMSSVLSLSEFDHAYL-----AE 494
+L L ++ + + IHS + +L +++ L
Sbjct: 201 -----MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 495 PSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKY 554
+ + +I +T V + L T++ + + DE
Sbjct: 256 AKAWNAFNLS-CKILLTT-----RFKQVTDFLSAATTTHISLDHHSMTLT---PDEVKSL 306
Query: 555 F-----VKSEDYRSVIYNESKAVHGTQGYLPVGL----------------FKNKENNIIR 593
+ +D E + P L +K+ + +
Sbjct: 307 LLKYLDCRPQDLPR----EVLTTN------PRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 594 EIFETSAQELGYPCPKDMNDRYVDVGFAELP 624
I E+S L P + + + P
Sbjct: 357 TIIESSLNVLE---PAEYRKMFDR--LSVFP 382
Score = 35.2 bits (80), Expect = 0.085
Identities = 35/275 (12%), Positives = 76/275 (27%), Gaps = 83/275 (30%)
Query: 35 QLTIQQKLALKSFQPKLLLQS-KIFDIIPYSNTDDIYNPFSPINQYSPYSPYNTDSLFDN 93
+LT + +L +P + + P + P ++ + + N
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFP----PSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 94 T-HPESLLNPYNPESLLSPLNPRSVFYPSNPEVPS--FDY--NNPNSP------FNPYNP 142
H SL+ ES +S +PS + N + YN
Sbjct: 410 KLHKYSLVEKQPKESTIS--------------IPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 143 SSVFNPKNIDSVFNPRNPDSPYYNQYQFLY-----SPLSPYNPRSLFSSQNPLSPLSPLN 197
F+ + P PY +QY + + + +LF
Sbjct: 456 PKTFDSDD----LIP-----PYLDQYFYSHIGHHLKNIEHPERMTLFRMV---------- 496
Query: 198 ANSPYNPRNQISYYN-------IENPKSPYNIHNPESPLYSDSPYY--Y--RNLPLYNPV 246
+ + I + + +N +Y Y N P Y +
Sbjct: 497 ------------FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544
Query: 247 ETELID---QYSTSVYNNPDSPL---SINSPHSVL 275
++D + ++ + + L ++ + +
Sbjct: 545 VNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 44.0 bits (103), Expect = 1e-04
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 13/89 (14%)
Query: 386 PFNENSLYHP-GNPDSPYDWQRLE----KERYNIYRSVI--YPPDMTPYVKSGDCFDIII 438
N + H + DW + +E + R++ Y D+ + D+II
Sbjct: 16 HLNSTPVTHCLSDIVKKEDWSDFKFAPIRES-TVSRAMTSRYFKDLDKFAV----SDVII 70
Query: 439 VGASAAGCVLANRLSEVS-SLKVLLIEAG 466
VGA ++G A +++ LKV +IE+
Sbjct: 71 VGAGSSGLSAAYVIAKNRPDLKVCIIESS 99
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 43.1 bits (102), Expect = 2e-04
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 470
+ +D+++VG G A ++ LK L+IE +
Sbjct: 3 ETYDVLVVGGGPGGSTAARYAAK-YGLKTLMIEKRPEIG 40
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 42.1 bits (98), Expect = 5e-04
Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 13/116 (11%)
Query: 359 PKNPESPFSPQNEDSIYNPENPNSPYNPFNENSLYHP-GNPDSPYDWQRLE----KERYN 413
P E P + N + L P +E
Sbjct: 3 PSVLEPQSVPTLVNVGLKAVGRNDAPVERDARGLSKPLLELMPTLGTDAFTFSPIRES-T 61
Query: 414 IYRSVI--YPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVS-SLKVLLIEAG 466
+ R++ Y D+ + + DI+IVGA + G A LS + L++ ++EAG
Sbjct: 62 VSRAMTRRYFADLDAHAE----TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAG 113
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 42.3 bits (100), Expect = 5e-04
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 652 VLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAI-ANAQLL 703
+V ++ +D G+ G+ V V A + V+L G+ N +++
Sbjct: 219 AEYDMRVQTLVTDDTGRVVGIVAKQ-YGKEVAVRARRGVVLATGSFAYNDKMI 270
Score = 32.7 bits (75), Expect = 0.53
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIE----AGGDT 469
D+++ G AG + + + VL++E GG T
Sbjct: 42 ADVVVAGYGIAGVAASIEAAR-AGADVLVLERTSGWGGAT 80
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 41.0 bits (96), Expect = 0.001
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468
+D++I+G AG A +LS LK+LL+++
Sbjct: 7 YDVLIIGGGFAGSSAAYQLSR-RGLKILLVDSKPW 40
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 39.9 bits (94), Expect = 0.002
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSR 474
D++I G G +LA L +V+++E +
Sbjct: 7 IDVLINGCGIGGAMLAYLLGR-QGHRVVVVEQARRERAING 46
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN;
2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 39.4 bits (91), Expect = 0.003
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIE 464
FD+ +VG+ G +A R++ +VL++E
Sbjct: 8 FDLFVVGSGFFGLTIAERVATQLDKRVLVLE 38
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 39.1 bits (91), Expect = 0.005
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466
+ FD+I++G G LA+ ++ +VLL+E
Sbjct: 6 EVFDLIVIGGGPGGSTLASFVAM-RGHRVLLLERE 39
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 38.5 bits (88), Expect = 0.006
Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 19/70 (27%)
Query: 424 MTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPG--MSS- 480
MT I I+G AG A L+ + +V L + SR G MSS
Sbjct: 1 MTV--------PIAIIGTGIAGLSAAQALTA-AGHQVHLFDK-------SRGSGGRMSSK 44
Query: 481 VLSLSEFDHA 490
D
Sbjct: 45 RSDAGALDMG 54
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 38.4 bits (89), Expect = 0.008
Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 1/46 (2%)
Query: 421 PPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466
+ P + I+G AG V L + V + E
Sbjct: 11 SSGLVPRGSHMTRSKVAIIGGGPAGSVAGLTLHK-LGHDVTIYERS 55
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 38.3 bits (88), Expect = 0.009
Identities = 7/32 (21%), Positives = 19/32 (59%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 465
D++++GA G A RL+++ +++++
Sbjct: 11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDS 42
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein
structure initiative, northeast structural genomics
consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Length = 421
Score = 37.8 bits (88), Expect = 0.010
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466
D++++GA AG V A+ +++ S KV ++E
Sbjct: 6 VDVLVIGAGPAGTVAASLVNK-SGFKVKIVEKQ 37
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme,
hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1
PDB: 1qy6_A
Length = 274
Score = 37.1 bits (85), Expect = 0.013
Identities = 24/96 (25%), Positives = 41/96 (42%)
Query: 306 NPEPSIFDSHNIYSFFSPHNPYSPFNPYNIDSPFNSDNPDSPFRNYPQYSRYNPKNPESP 365
N +F+ N + FN + + + + P NP++P
Sbjct: 168 NSGSPVFNEKNEVIGIHWGGVPNEFNGAVFINENVRNFLKQNIEDINFANDDQPNNPDNP 227
Query: 366 FSPQNEDSIYNPENPNSPYNPFNENSLYHPGNPDSP 401
+P N D+ NP+NPN+P P N ++ +P NPD+
Sbjct: 228 DNPNNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNG 263
Score = 34.0 bits (77), Expect = 0.15
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 6/108 (5%)
Query: 294 SPENPASPFNPYNPEPSIFDSHNIYSFFSPHNPYSPFNPYNIDSPFNSDNPDSPFRNYPQ 353
+ N SP E + + F+ + + N + +
Sbjct: 165 TGGNSGSPVFNEKNEVIGIHWGGVPNEFNGAVFINENVRNFLKQNIEDINFANDDQPNNP 224
Query: 354 YSRYNPKNPESPFSPQNEDSIYNPENPNSPYNPFNENSLYHPGNPDSP 401
+ NP NP++P +P N + NP+ PN+P NP N+ +P N D+
Sbjct: 225 DNPDNPNNPDNPNNPDNPN---NPDEPNNPDNP---NNPDNPDNGDNN 266
Score = 34.0 bits (77), Expect = 0.15
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 323 PHNPYSPFNPYNIDSPFNSDNPDSPFRNYPQYSRYNPKNPESPFSPQNEDSIYNPENPNS 382
N N D P N DNPD+P N P NP NP++P +P ++ NP NP++
Sbjct: 206 LKQNIEDINFANDDQPNNPDNPDNP--NNPD----NPNNPDNPNNPDEPNNPDNPNNPDN 259
Query: 383 PYNPFNENSLYHPGNPDS 400
P N N N NPD+
Sbjct: 260 PDNGDNNN----SDNPDA 273
Score = 30.6 bits (68), Expect = 1.6
Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 16/103 (15%)
Query: 253 QYSTSVYNNPDSPLSINSPHSVLNPYNLDSILNPFNVKSPLSPENPASPFNPYNPEPSIF 312
+ + N + N + P N +P +P NP +P NP NP
Sbjct: 188 VPNEFNGAVFINENVRNFLKQNIEDINFANDDQPNNPDNPDNPNNPDNPNNPDNPN---- 243
Query: 313 DSHNIYSFFSPHNPYSPFNPYNIDSPFNSDNPDSPFRNYPQYS 355
NP P NP N ++P N DN D+ + P +
Sbjct: 244 ------------NPDEPNNPDNPNNPDNPDNGDNNNSDNPDAA 274
Score = 29.0 bits (64), Expect = 4.9
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 76 INQYSPYSPYNTDSLFDNTHPESLLNPYNPESLLSPLNPRSVFYPSNPEVPSFDYNNPNS 135
I+ + +N + L + + P + P NP P +NPN+
Sbjct: 183 IHWGGVPNEFNGAVFINENVRNFLKQNIEDINFANDDQPNNPDNPDNPNNP----DNPNN 238
Query: 136 PFNPYNPSSVFNPKNIDSVFNPRNPDSP 163
P NP NP NP N ++ NP N D+
Sbjct: 239 PDNPNNPDEPNNPDNPNNPDNPDNGDNN 266
Score = 29.0 bits (64), Expect = 5.8
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 16/115 (13%)
Query: 233 SPYYYRNLPLYNPVETELIDQYSTSVYNNPDSPLSINSPHSVLNPYNLDSILNPFNVKSP 292
SP + + + ++++ +V+ N + + +N N D NP N +P
Sbjct: 171 SPVFNEKNEVIGIHWGGVPNEFNGAVFINENVRNFLKQNIEDINFANDDQPNNPDNPDNP 230
Query: 293 LSPENPASPFNPYNPEPSIFDSHNIYSFFSPHNPYSPFNPYNIDSPFNSDNPDSP 347
+P+NP +P NP NP+ P+NP +P NP D+P N DN +S
Sbjct: 231 NNPDNPNNPDNPNNPD-------------EPNNPDNPNNP---DNPDNGDNNNSD 269
Score = 28.6 bits (63), Expect = 7.7
Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 10/100 (10%)
Query: 65 NTDDIYNPFSPINQYSPYSPYNTDSLFDNTHPESLLNPYNPESLLSPLNPRSVFYPSNPE 124
+ N + + L N + N P + +P NP + P+NP+
Sbjct: 181 IGIHWGGVPNEFNGAVFINENVRNFLKQNIEDINFANDDQPNNPDNPDNPNNPDNPNNPD 240
Query: 125 VPSFDYNNPNSPFNPYNPSSVFNPKNIDSVFNPRNPDSPY 164
P+ NP P++ NP N D+ N N +S
Sbjct: 241 NPN----------NPDEPNNPDNPNNPDNPDNGDNNNSDN 270
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 37.6 bits (88), Expect = 0.013
Identities = 6/35 (17%), Positives = 13/35 (37%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468
D +++GA G ++L L + +
Sbjct: 9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADG 43
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 37.4 bits (85), Expect = 0.014
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 7/60 (11%)
Query: 435 DIIIVGASAAGCVLANRLSE--VSSLKVLLIEAGGDT--PIHSRIPGMSSVLSLSEFDHA 490
++IVGA G + A L L + + + D+ + + + + D
Sbjct: 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCT---ADLG 59
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 37.4 bits (85), Expect = 0.015
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYL 492
FDI+++GA G A L +++ +LL+E GG V + +
Sbjct: 37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIPAGQE 96
Query: 493 AEPSQ 497
A+
Sbjct: 97 AQAEW 101
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A
{Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 36.7 bits (85), Expect = 0.023
Identities = 41/288 (14%), Positives = 74/288 (25%), Gaps = 83/288 (28%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGM-SSVLSLSEFDHAYL 492
FD ++VGA G A L S VL+++AG PG S S
Sbjct: 24 FDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAG-------HAPGSGDSGRS--------- 67
Query: 493 AEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYN-GW---GY 548
R SS + ++ +E+ + G + G GY
Sbjct: 68 ------MA-AFRTFF-----------SSTMNRLVAGSTVRL-FEDAQRGGEDLGLVKSGY 108
Query: 549 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 608
FV + R E G +G + +E + + +
Sbjct: 109 -----LFVYDRE-RWREVEEPLREAGEEG-RDYLIIPPEE---LERRLGMNTRVSDGEEA 158
Query: 609 KDMN------------DRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRS 656
+ + ++D D Y + +
Sbjct: 159 EVLGVGDVEGAVLIRSAGFLDA--------------EKVVDYYYR--RASGAGVEFIFGR 202
Query: 657 KVTKVIINDQNVATGVEYVNSKGETVRV----TANKEVILTAGAIANA 700
+V + V G+E + R ++ + + A
Sbjct: 203 RVVG-VELKPRVELGIEGEPLPWQEARASAAVLSDGTRVEVGEKLVVA 249
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 36.7 bits (84), Expect = 0.028
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 465
FD +IVGA AG VLA RL+ S +VL+++
Sbjct: 30 FDYLIVGAGFAGSVLAERLAS-SGQRVLIVDR 60
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase;
HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2
c.47.1.10 d.16.1.2 PDB: 1foh_A*
Length = 665
Score = 36.6 bits (84), Expect = 0.032
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 424 MTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSS----LKVLLIEAGGDTPIHSRIPGMS 479
MT Y S D++IVGA AG + A LSE LKV +I+ + + G+
Sbjct: 1 MTKY--SESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQ 58
Query: 480 S 480
Sbjct: 59 C 59
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase;
HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB:
2r0g_A* 2r0p_A* 3ept_A*
Length = 549
Score = 36.2 bits (84), Expect = 0.034
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 9/56 (16%)
Query: 421 PPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSE--VSSLKVLLIEAGGDTPIHSR 474
M ++ D++I+G G LA L+ V L++E T H R
Sbjct: 18 GSHMNAPIE----TDVLILGGGPVGMALALDLAHRQVG---HLVVEQTDGTITHPR 66
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase,
complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas
testosteroni} PDB: 2dki_A*
Length = 639
Score = 36.4 bits (84), Expect = 0.035
Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 16/88 (18%)
Query: 393 YHPGNPDSPYDWQRLEKERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRL 452
+ PGNP + + + V D++IVG AG LA +L
Sbjct: 8 FRPGNPLIAPASPL----------APAHTEAVPSQV------DVLIVGCGPAGLTLAAQL 51
Query: 453 SEVSSLKVLLIEAGGDTPIHSRIPGMSS 480
+ ++ ++E + G++
Sbjct: 52 AAFPDIRTCIVEQKEGPMELGQADGIAC 79
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD,
oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 36.1 bits (84), Expect = 0.041
Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLI 463
D++I+G+ AAG LA RL++ +V+++
Sbjct: 9 CDVLIIGSGAAGLSLALRLAD--QHQVIVL 36
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 35.8 bits (82), Expect = 0.041
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 465
+D IIVG+ G V AN L + + KVL+IE
Sbjct: 2 YDYIIVGSGLFGAVCANELKK-LNKKVLVIEK 32
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase; HET:
FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 35.9 bits (83), Expect = 0.044
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG 467
+D I+VG +G A L+ + KVLL+E GG
Sbjct: 2 YDAIVVGGGFSGLKAARDLTN-AGKKVLLLEGGERLGG 38
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase,
enantioselectivity, directed evolution variant; HET:
FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Length = 495
Score = 36.1 bits (83), Expect = 0.044
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 417 SVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG 467
VI PP +D+I++G G L+ + K LL+EA GG
Sbjct: 23 GVISPPTNIEDTDKDGPWDVIVIGGGYCGLTATRDLTV-AGFKTLLLEARDRIGG 76
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 36.0 bits (84), Expect = 0.049
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468
+D+++VGA AG +R L V EA
Sbjct: 22 YDVVVVGAGIAGLYAIHRFRS-QGLTVRAFEAASG 55
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 35.6 bits (83), Expect = 0.051
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468
D+++VGA +G RL E V +IE GD
Sbjct: 17 VDVLVVGAGFSGLYALYRLRE-LGRSVHVIETAGD 50
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A
{Staphylococcus aureus} SCOP: b.47.1.1
Length = 268
Score = 35.0 bits (80), Expect = 0.057
Identities = 21/71 (29%), Positives = 34/71 (47%)
Query: 331 NPYNIDSPFNSDNPDSPFRNYPQYSRYNPKNPESPFSPQNEDSIYNPENPNSPYNPFNEN 390
N +N N + + +N + N P +P +P N ++ NP NP+ P NP N N
Sbjct: 190 NEFNGAVFINENVRNFLKQNIEDINFANDDQPNNPDNPDNPNNPDNPNNPDEPNNPDNPN 249
Query: 391 SLYHPGNPDSP 401
+ +P N D+
Sbjct: 250 NPDNPDNGDNN 260
Score = 32.3 bits (73), Expect = 0.40
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 16/76 (21%)
Query: 325 NPYSPFNPYNIDSPFNSDNPDSPFRNYPQYSRYNPKNPESPFSPQNEDSIYNPENPNSPY 384
N N D P N DNPD+P NP++P +P ++ NP NP++P
Sbjct: 208 QNIEDINFANDDQPNNPDNPDNP------------NNPDNPNNPDEPNNPDNPNNPDNPD 255
Query: 385 NPFNENSLYHPGNPDS 400
N N N NPD+
Sbjct: 256 NGDNNN----SDNPDA 267
Score = 30.0 bits (67), Expect = 2.5
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 17/95 (17%)
Query: 252 DQYSTSVYNNPDSPLSINSPHSVLNPYNLDSILNPFNVKSPLSPENPASPFNPYNPEPSI 311
++++ +V+ N + + +N N D NP N +P +P+NP +P P NP+
Sbjct: 190 NEFNGAVFINENVRNFLKQNIEDINFANDDQPNNPDNPDNPNNPDNPNNPDEPNNPDNPN 249
Query: 312 FDSHNIYSFFSPHNPYSPFNPYNIDSPFNSDNPDS 346
+P NP + N NSDNPD+
Sbjct: 250 ----------NPDNPDNGDNN-------NSDNPDA 267
Score = 30.0 bits (67), Expect = 2.5
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 13/73 (17%)
Query: 310 SIFDSHNIYSFFSPHNPYSPFNPYNIDSPFNSDNPDSPFRNYPQYSRYNPKNPESPFSPQ 369
+ N + P+NP +P NP N D+P N D P++P NP NP++P +
Sbjct: 208 QNIEDINFANDDQPNNPDNPDNPNNPDNPNNPDEPNNP---------DNPNNPDNPDNGD 258
Query: 370 NEDSIYNPENPNS 382
N N +NP++
Sbjct: 259 NN----NSDNPDA 267
Score = 28.9 bits (64), Expect = 5.7
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 61 IPYSNTDDIYNPFSPINQYSPYSPYNTDSLFDNTHPESLLNPYNPESLLSPLNPRSVFYP 120
I + + +N IN+ + + + NP NP++ +P NP + P
Sbjct: 183 IHWGGVPNEFNGAVFINENVRNFLKQNIEDINFANDDQPNNPDNPDNPNNPDNPNNPDEP 242
Query: 121 SNPEVPSFDYNNPNSPFNPYNPSS 144
+NP+ P NNP++P N N +S
Sbjct: 243 NNPDNP----NNPDNPDNGDNNNS 262
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 35.6 bits (83), Expect = 0.062
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468
D +++GA G A +++ + +KVL IEAG D
Sbjct: 10 LDAVVIGAGVTGIYQAFLINQ-AGMKVLGIEAGED 43
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 35.4 bits (81), Expect = 0.064
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 465
I+IVGA +G V+ +L+E +V +I+
Sbjct: 4 KKILIVGAGFSGAVIGRQLAE-KGHQVHIIDQ 34
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 35.1 bits (80), Expect = 0.080
Identities = 26/130 (20%), Positives = 41/130 (31%), Gaps = 13/130 (10%)
Query: 272 HSVLNPYNLDSILNPFNVKSPLSPENPASPFNPYNPEPSIFDSHNIYSFFSPHNPYSPFN 331
H + + D + + S SP S P SP +SP +
Sbjct: 4 HHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLG------PGIGSPGQLHSPIS 57
Query: 332 PYNIDSPFNSDNPDSPFRNYPQYSRYNPKNPESPFSPQNEDSIYNPENPNSPYNPFNENS 391
+ SP N P + P P + P +P S +P +SP NP + +
Sbjct: 58 TLS--SPINGMGPPFSVISSPM----GPHSMSVPTTPTLGFSTGSP-QLSSPMNPVSSSE 110
Query: 392 LYHPGNPDSP 401
P +
Sbjct: 111 DIKPPLGLNG 120
Score = 30.1 bits (67), Expect = 3.2
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 24/135 (17%)
Query: 70 YNPFSPINQYSPYSPYNTDSLFDNTHPESLLNPYNPESLLSPLNPRSVFYPSNPEVPSFD 129
+ SP + S +P HP +P L SP++ S
Sbjct: 22 SSLTSPTGRGSMAAPSL--------HPSLGPGIGSPGQLHSPIST----LSSPINGMGPP 69
Query: 130 YNNPNSPFNPYNPSSVFNPKNIDSVFNPRNPDSPYYNQYQFLYSPLSPYNPRSLFSSQNP 189
++ +SP P++ S P P + L SP++P +
Sbjct: 70 FSVISSPMGPHSMSV------------PTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLG 117
Query: 190 LSPLSPLNANSPYNP 204
L+ + + A+ N
Sbjct: 118 LNGVLKVPAHPSGNM 132
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP:
c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A*
1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A*
2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A*
2v61_A* 2vrl_A* ...
Length = 520
Score = 35.2 bits (81), Expect = 0.081
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPG 477
D+++VG +G A L + S L V+++EA R+ G
Sbjct: 6 DVVVVGGGISGMAAAKLLHD-SGLNVVVLEA------RDRVGG 41
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 34.6 bits (80), Expect = 0.088
Identities = 41/281 (14%), Positives = 75/281 (26%), Gaps = 99/281 (35%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 493
+D+II+G+ + G + + L VL+ +A P H G
Sbjct: 3 YDLIIIGSGSVGAAAGYYATR-AGLNVLMTDAH--MPPHQH--GSHH------------- 44
Query: 494 EPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLK 553
+ R+ I + G Y W + L
Sbjct: 45 ----------GDTRL----------------IRHAYGEGEKYVPLVLRAQMLW---DEL- 74
Query: 554 YFVKSEDYRSVIYNESKAVHGTQGYLPVGL--FKNKENNIIREIFETSAQELGYPC---- 607
S+ ++ G+ ++ + + SA++
Sbjct: 75 ---------------SRHNEDDPIFVRSGVINLGPADSTFLANVAH-SAEQWQLNVEKLD 118
Query: 608 PKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPI------------AGKRTNLYVLKR 655
+ + R+ ++ + GL F +L AG L
Sbjct: 119 AQGIMARWPEIRVPDNYI----GL-FETDSGFLRSELAIKTWIQLAKEAGCA----QLFN 169
Query: 656 SKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGA 696
VT + +D GV + G A K I+ AG
Sbjct: 170 CPVTAIRHDD----DGVTIETADG---EYQAKK-AIVCAGT 202
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis,
merohedral twinning, enzyme mechanism, hydroxylase,
flavoprotein; HET: FAD VAK; 2.49A {Streptomyces
purpurascens}
Length = 535
Score = 35.0 bits (81), Expect = 0.090
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 435 DIIIVGASAAGCVLANRLSE--VSSLKVLLIEAGGDTPIHSR 474
D+++VGA G A L+ V VL++E + R
Sbjct: 7 DVLVVGAGLGGLSTAMFLARQGVR---VLVVERRPGLSPYPR 45
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Length = 499
Score = 34.2 bits (79), Expect = 0.14
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 435 DIIIVGASAAGCVLAN--RLSEVSSLKVLLIEAGGDTPIHSRIPGMS 479
+I+VGA AG +LA RL V V+++E SR G +
Sbjct: 14 SVIVVGAGPAGLMLAGELRLGGVD---VMVLEQLPQRTGESRGLGFT 57
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics; HET:
FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 33.7 bits (78), Expect = 0.16
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 9/38 (23%)
Query: 434 FDIIIVGASAAG----CVLANRLSEVSSLKVLLIEAGG 467
FD+II+G S AG L R + +LL++AG
Sbjct: 3 FDVIIIGGSYAGLSAALQLG-R----ARKNILLVDAGE 35
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 34.1 bits (77), Expect = 0.17
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEA 465
I+I+GA G A RL+E+ L E
Sbjct: 11 KIVIIGAGPTGLGAAVRLTELGYKNWHLYEC 41
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Length = 500
Score = 33.8 bits (78), Expect = 0.21
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 435 DIIIVGASAAGCVLANRLSE--VSSLKVLLIEAGGDTPIHSRIPGMS 479
+I+VGA AG +LA L V V+++E + SR G +
Sbjct: 13 AVIVVGAGPAGMMLAGELRLAGVE---VVVLERLVERTGESRGLGFT 56
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 33.6 bits (77), Expect = 0.23
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 434 FDIIIVGASAAGC---VLANRLSEVSSLKVLLIE 464
DI+I+G +GC A +++ LKV L+E
Sbjct: 23 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVE 56
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein,
oxidoreductase; HET: FAD; 2.89A {Streptomyces
argillaceus}
Length = 570
Score = 33.5 bits (77), Expect = 0.24
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 435 DIIIVGASAAGCVLANRLSE--VSSLKVLLIEAGGDTPIHSRIPGMS 479
D+++VG G +LA L V L++E + H R +
Sbjct: 51 DVVVVGGGPVGLMLAGELRAGGVG---ALVLEKLVEPVGHDRAGALH 94
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 33.3 bits (75), Expect = 0.29
Identities = 19/131 (14%), Positives = 48/131 (36%), Gaps = 8/131 (6%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 493
+D+II+G C+L+ LS K+L+++ + G ++ L+L+ + +
Sbjct: 21 YDVIILGTGLKECILSGLLS-HYGKKILVLDR------NPYYGGETASLNLTNLYNTFKP 73
Query: 494 EPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLK 553
+ + + G K + + IL + +Y + + + +
Sbjct: 74 KENIPSKYGENRHWNVDLIPKFILVGGNLVKILKKTRV-TNYLEWLVVEGSYVYQHQKKG 132
Query: 554 YFVKSEDYRSV 564
+ + V
Sbjct: 133 FLTSEKFIHKV 143
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 33.2 bits (75), Expect = 0.29
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG 467
+II+GA AG A+ L + L++EA GG
Sbjct: 10 KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGG 46
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 32.8 bits (75), Expect = 0.37
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSR 474
+D+++VG G A +++E +VL++E T +
Sbjct: 5 YDVVVVGGGPVGLATAWQVAE-RGHRVLVLERH--TFFNEN 42
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 32.5 bits (74), Expect = 0.42
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG 467
I I+GA AG L + ++E GG
Sbjct: 8 RIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGG 44
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 32.5 bits (75), Expect = 0.44
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 9/37 (24%)
Query: 434 FDIIIVGASAAG----CVLANRLSEVSSLKVLLIEAG 466
D ++GA AG VL R + ++ L +
Sbjct: 7 IDCAVIGAGPAGLNASLVLG-R----ARKQIALFDNN 38
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Length = 369
Score = 32.5 bits (75), Expect = 0.48
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468
D I++GA G +A L+ +VL+ EA
Sbjct: 5 IDCIVIGAGVVGLAIARALAA-GGHEVLVAEAAEG 38
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
PDB: 1zx9_A*
Length = 467
Score = 32.5 bits (75), Expect = 0.55
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEA---GGD 468
+ ++G+ A A + E +V LIE GG
Sbjct: 5 VQVAVIGSGGAAMAAALKAVEQ-GAQVTLIERGTIGGT 41
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 32.7 bits (74), Expect = 0.56
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 434 FDIIIVGASAAGCVLANRLSEVS-----SLKVLLIE 464
D+++VG C A + K+LL++
Sbjct: 23 VDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVD 58
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 32.4 bits (74), Expect = 0.61
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG 467
D+ IVGA +G A L + + L V +IEA GG
Sbjct: 7 DVAIVGAGPSGLAAATALRK-AGLSVAVIEARDRVGG 42
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 31.9 bits (73), Expect = 0.64
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSR 474
FD+I+VGA + G +L++ +K LL++A P H+
Sbjct: 4 FDVIVVGAGSMGMAAGYQLAK-QGVKTLLVDAFD--PPHTN 41
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 32.1 bits (74), Expect = 0.69
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIE 464
+ II+GA AAG A +L++ V + +
Sbjct: 5 SENIIIGAGAAGLFCAAQLAK-LGKSVTVFD 34
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit);
electron transport(flavocytochrome); HET: FAD HEM; 2.53A
{Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 401
Score = 32.0 bits (73), Expect = 0.72
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 436 IIIVGASAAGCVLANRLSE-VSSLKVLLIEA 465
+++VG G A + S++V LIE
Sbjct: 5 VVVVGGGTGGATAAKYIKLADPSIEVTLIEP 35
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 31.4 bits (72), Expect = 0.80
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 436 IIIVGASAAGCVLANRLSEVSSLKVLLIE 464
+II+G LA + V++I
Sbjct: 3 VIIIGGETTAYYLARSMLS-RKYGVVIIN 30
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 31.8 bits (72), Expect = 0.80
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 422 PDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG 467
D+ VK ++++G AG A L + + KV ++EA GG
Sbjct: 2 GDLIGKVKGS--HSVVVLGGGPAGLCSAFELQK-AGYKVTVLEARTRPGG 48
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET:
NAG BMA MAN; 1.67A {Botrytis aclada}
Length = 580
Score = 32.0 bits (73), Expect = 0.81
Identities = 30/168 (17%), Positives = 48/168 (28%), Gaps = 19/168 (11%)
Query: 198 ANSPYNPRNQISYYNIENPKSPYNIHNPESPLYSDSPYYYRNLPLYNPVETELIDQYSTS 257
N N + Y + P + + L+D+ +S
Sbjct: 337 NNEAANATGILRYDSSSIANPTSVGTTPRGTCEDEPVASLVPHLALDVGGYSLVDEQVSS 396
Query: 258 VYNNPDSPLSINSPHSVLNPYNLDSILNPFNVKSPLSPENPASPFNPYNPEPSIFD---- 313
+ N +INS S+L ++ + L FN ++ E N
Sbjct: 397 AFTN-YFTWTINS-SSLLLDWSSPTTLKIFNNETIFPTEYNVVALEQTNANEEWVVYVIE 454
Query: 314 -------SHNI----YSFFSPHNPYSPFNPYNIDSPFNSDNPDSPFRN 350
H I + FF FN + FN NP P R+
Sbjct: 455 DLTGFGIWHPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNP--PRRD 500
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein
complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A
{Pyrococcus horikoshii}
Length = 493
Score = 31.9 bits (72), Expect = 0.86
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 407 LEKERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIE-- 464
++ ER Y P ++ D+ I+G AG + L L V LIE
Sbjct: 83 MKIERQGYYDFHEEPVVEPGEIERVVV-DVAIIGGGPAG--IGAALELQQYLTVALIEER 139
Query: 465 --AGGDT 469
GGD
Sbjct: 140 GWLGGDM 146
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 31.7 bits (73), Expect = 0.87
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466
+D+I++G +G + A +E VLL++ G
Sbjct: 27 YDVIVIGGGPSGLMAAIGAAE-EGANVLLLDKG 58
>2vqr_A Putative sulfatase; phosphonate monoester hydrolase, hydrolase,
plasmid, formylglycine, phosphodiesterase; 1.42A
{Rhizobium leguminosarum BV} PDB: 2w8s_A
Length = 543
Score = 31.6 bits (72), Expect = 0.91
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 7/60 (11%)
Query: 319 SFFSPHNPYSP-------FNPYNIDSPFNSDNPDSPFRNYPQYSRYNPKNPESPFSPQNE 371
++ PH P+ + P ++ +P + NPD +P Y F E
Sbjct: 242 GYYRPHPPFVASAPYHAMYRPEDMPAPIRAANPDIEAAQHPLMKFYVDSIRRGSFFQGAE 301
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 31.8 bits (72), Expect = 0.94
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG 467
+I+VGA +G A RLSE +L++EA GG
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGG 42
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural
genomi research consortium, nysgrc; HET: FDA; 2.51A
{Sinorhizobium meliloti}
Length = 417
Score = 31.3 bits (72), Expect = 1.0
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466
D++I+GA AAG + A + +VL+I+
Sbjct: 28 QDVVIIGAGAAGMMCAIEAGK-RGRRVLVIDHA 59
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 31.4 bits (70), Expect = 1.1
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 493
+D+I++G C+L+ LS V KVL I+ G ++ ++LS+ +
Sbjct: 12 YDVIVLGTGITECILSGLLS-VDGKKVLHIDK------QDHYGGEAASVTLSQLYEKFKQ 64
Query: 494 EPSQ 497
P
Sbjct: 65 NPIS 68
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 31.2 bits (71), Expect = 1.2
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 436 IIIVGASAAGCVLANRLSE-VSSLKVLLIEAGGDTPIHSRIPG 477
++++G G A L + LK+ LI D P P
Sbjct: 5 VVVIGGGVGGIATAYNLRNLMPDLKITLIS---DRPYFGFTPA 44
>1ciy_A Cryia(A); toxin, ICP; 2.25A {Bacillus thuringiensis} SCOP: b.18.1.3
b.77.2.1 f.1.3.1
Length = 590
Score = 31.3 bits (70), Expect = 1.3
Identities = 19/225 (8%), Positives = 51/225 (22%), Gaps = 5/225 (2%)
Query: 128 FDYNNPNSPFNPYNPSSVFNPKNIDSVFNPRNPDSPYYNQYQFLYSPLSPYNPRSLFSSQ 187
D S ++ + ++ ++ + L
Sbjct: 213 LDIVALFSNYDSRRYPIRTVSQLTREIYTNPVLENFDGSFRGMAQRIEQNIRQPHLMDIL 272
Query: 188 NPLSPLSPLNANSPYNPRNQI--SYYNIENPKSPYNIHNPESPLYSDSPYYYRNLPLYNP 245
N ++ + ++ Y +QI S P+ + + L ++
Sbjct: 273 NSITIYTDVHRGFNYWSGHQITASPVGFSGPEFAFPLFGNAGNAAPPVLVSLTGLGIFR- 331
Query: 246 VETELIDQYSTSVYNNPDSPLSINSPHSVLNPYNLDSILNPFNVKSPLSPENPASPFNPY 305
T Y + + + + + + P + + P
Sbjct: 332 --TLSSPLYRRIILGSGPNNQELFVLDGTEFSFASLTTNLPSTIYRQRGTVDSLDVIPPQ 389
Query: 306 NPEPSIFDSHNIYSFFSPHNPYSPFNPYNIDSPFNSDNPDSPFRN 350
+ + + Y + +P S S N
Sbjct: 390 DNSVPPRAGFSHRLSHVTMLSQAAGAVYTLRAPTFSWQHRSAEFN 434
>1j1l_A Pirin; beta sandwich, cupin, iron, metatl binding protein; 2.10A
{Homo sapiens} SCOP: b.82.1.12 PDB: 3acl_A*
Length = 290
Score = 30.6 bits (70), Expect = 1.4
Identities = 9/64 (14%), Positives = 20/64 (31%), Gaps = 8/64 (12%)
Query: 644 AGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 703
G + +Y + V I + +E T + V + + +
Sbjct: 188 KGWTSFIYTISGD----VYIGPDDAQQKIE----PHHTAVLGEGDSVQVENKDPKRSHFV 239
Query: 704 LLSG 707
L++G
Sbjct: 240 LIAG 243
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG FUC
PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2
d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A*
1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 31.0 bits (70), Expect = 1.5
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG 467
++IVGA AG A L+ + +V ++EA GG
Sbjct: 35 HVVIVGAGMAGLSAAYVLAG-AGHQVTVLEASERPGG 70
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Length = 478
Score = 30.7 bits (69), Expect = 1.7
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 12/52 (23%)
Query: 420 YPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG 467
+ P T ++ +VG +G +A+ L +L+E+ GG
Sbjct: 10 HMPRTTGM-------NVAVVGGGISGLAVAHHLRS-RGTDAVLLESSARLGG 53
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved
protein, rossmann fold, structural genomics, NPPSFA;
HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Length = 180
Score = 29.8 bits (68), Expect = 1.7
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 7/37 (18%)
Query: 434 FDIIIVGASAAGC---VLANRLSEVSSLKVLLIEAGG 467
+D+I+VG +G + R + LKVL+++ G
Sbjct: 2 WDVIVVGGGPSGLSAALFLAR----AGLKVLVLDGGR 34
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 30.6 bits (70), Expect = 1.8
Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 436 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLS-LSEFDHAYLAE 494
++IVG G LA +LS+ + +V +I+ P +S+ +S ++ + +
Sbjct: 11 VVIVGNGPGGFELAKQLSQ--TYEVTVIDKEPV-PYYSKP-MLSHYIAGFIPRNRLFPYS 66
Query: 495 PSQFAGLGVR 504
+ G+
Sbjct: 67 LDWYRKRGIE 76
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG
FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
d.58.1.6 PDB: 2gmj_A*
Length = 584
Score = 30.9 bits (70), Expect = 1.9
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSS-----LKVLLIEAGGDTPIHS 473
D++IVGA AG A RL ++++ L+V L+E H+
Sbjct: 36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHT 80
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 30.9 bits (69), Expect = 1.9
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG 467
+ ++GA +G A +L L V + EA GG
Sbjct: 15 RVAVIGAGVSGLAAAYKLKI-HGLNVTVFEAEGKAGG 50
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A
{Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1aso_A* 1asp_A* 1asq_A*
Length = 552
Score = 30.7 bits (70), Expect = 2.1
Identities = 19/128 (14%), Positives = 38/128 (29%), Gaps = 15/128 (11%)
Query: 259 YNNPDSPLSINSPHSVLNPYN--LDSILNPFNVKSPLSPENPASPFNP---YNPEPSIFD 313
Y SP ++ S + + + + P FN ++ +
Sbjct: 298 YLPNSVSKLPTSPPPQTPAWDDFDRSKNFTYRITAAMGSPKPPVKFNRRIFLLNTQNVIN 357
Query: 314 SHNIY-----SFFSPHNPYSPFNPYNIDSPFNSDNPDSPFRNYPQYSRYNPKNPESPFSP 368
+ + S P PY YN+ F+ + P F Y+ P +
Sbjct: 358 GYVKWAINDVSLALPPTPYLGAMKYNLLHAFDQNPPPEVFPED-----YDIDTPPTNEKT 412
Query: 369 QNEDSIYN 376
+ + +Y
Sbjct: 413 RIGNGVYQ 420
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 30.6 bits (68), Expect = 2.2
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467
+D+I++G C+L+ +S V+ KVL ++
Sbjct: 7 YDVIVLGTGLTECILSGIMS-VNGKKVLHMDRNP 39
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 29.9 bits (68), Expect = 2.8
Identities = 7/33 (21%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466
++ +++G G +A L++ + L E+G
Sbjct: 18 YEAVVIGGGIIGSAIAYYLAK-ENKNTALFESG 49
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis,
biosynthetic protein, flavoprotein; HET: TRP; 2.08A
{Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A*
2oal_A* 2oam_A
Length = 550
Score = 30.1 bits (66), Expect = 3.2
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 418 VIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEV--SSLKVLLIEAGGDTPIH--- 472
V M+ + I+IVG AG + A+ L + + + L++A +
Sbjct: 15 VPRGSHMSGKIDK-----ILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGE 69
Query: 473 SRIPGMSSVL 482
+ IP + +
Sbjct: 70 ATIPNLQTAF 79
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 30.0 bits (67), Expect = 3.2
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 421 PPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSE----VSSLKVLLIEAGGDTPIHSRIP 476
MT + D+I VG + LA L E +L+VL ++ GD H
Sbjct: 18 GSHMTQATATAVVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWH---G 74
Query: 477 GM 478
Sbjct: 75 NT 76
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 29.7 bits (67), Expect = 3.3
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 436 IIIVGASAAGCVLANRLSEV--SSLKVLLIE 464
++I+GA G A + E S +V LI
Sbjct: 7 VVILGAGTGGMPAAYEMKEALGSGHEVTLIS 37
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin C,
SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 29.6 bits (67), Expect = 3.4
Identities = 14/66 (21%), Positives = 19/66 (28%), Gaps = 13/66 (19%)
Query: 374 IYNPENPNSPYNPFNENSLYHPGNPDSPYDWQRLEKER--------YNI-YRSV----IY 420
IY N + S P P + ++L E + I R IY
Sbjct: 148 IYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIY 207
Query: 421 PPDMTP 426
P T
Sbjct: 208 GPFGTW 213
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 3.4
Identities = 4/15 (26%), Positives = 8/15 (53%), Gaps = 2/15 (13%)
Query: 97 ESLLNPYNPESLLSP 111
++ L Y +S +P
Sbjct: 26 QASLKLYADDS--AP 38
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate
dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A
{Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Length = 501
Score = 29.9 bits (68), Expect = 3.6
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 9/37 (24%)
Query: 434 FDIIIVG--ASAAGCVL--ANRLSEVSSLKVLLIEAG 466
D+I++G + AG A R L VL++EA
Sbjct: 4 KDLIVIGGGINGAGIAADAAGR-----GLSVLMLEAQ 35
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding,
FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Length = 323
Score = 29.4 bits (67), Expect = 3.7
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 9/48 (18%)
Query: 425 TPYVKSGDCFDIIIVGASAAGC---VLANRLSEVSSLKVLLIE--AGG 467
T VK G+ FD+IIVG A + + R LK L+I GG
Sbjct: 7 TTSVKPGEKFDVIIVGLGPAAYGAALYSAR----YMLKTLVIGETPGG 50
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 29.4 bits (66), Expect = 4.2
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466
++IVGA G A L+ V +++
Sbjct: 7 SSLLIVGAGTWGTSTALHLARRGYTNVTVLDPY 39
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 29.5 bits (65), Expect = 4.9
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 422 PDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 465
+ + +II+G+ +G A +L + V L+EA
Sbjct: 96 YKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQS-FGMDVTLLEA 138
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 29.3 bits (66), Expect = 5.4
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 436 IIIVGASAAGCVLANRLSEV--SSLKVLLIEAGGDTPIHSRIPG 477
++++G A L + S V +I + P
Sbjct: 4 VLVLGGRFGALTAAYTLKRLVGSKADVKVIN---KSRFSYFRPA 44
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET:
FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A*
3nyf_A* 3sm8_A*
Length = 381
Score = 29.1 bits (66), Expect = 5.5
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468
D +++GA AG LS +V+++E
Sbjct: 11 DYLVIGAGIAGASTGYWLSAHG--RVVVLEREAQ 42
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane
protein, heme protein, iron sulfur PROT cytochrome B,
oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus
gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A*
1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A*
3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A*
3aec_A* ...
Length = 621
Score = 29.2 bits (66), Expect = 5.6
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLI 463
FD ++VGA AG A LSE + +
Sbjct: 19 FDAVVVGAGGAGLRAAFGLSE-AGFNTACV 47
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 29.0 bits (66), Expect = 5.7
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 436 IIIVGASAAGCVLANRLSEVS-SLKVLLIEAGGD 468
I++VGA A G A+++ + +++ E D
Sbjct: 4 IVVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG,
structural genomics, PSI-2, prote structure initiative;
HET: FAD; 2.15A {Vibrio parahaemolyticus}
Length = 549
Score = 29.2 bits (65), Expect = 5.7
Identities = 6/56 (10%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 413 NIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 468
++ ++ I++G G L++ +++E G +
Sbjct: 87 HVRQTPDMEYKFVAKAPENLTERPIVIGFGPCGLFAGLVLAQ-MGFNPIIVERGKE 141
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 29.0 bits (66), Expect = 5.8
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 436 IIIVGASAAGCVLANRLSEVS-SLKVLLIEAGGD 468
+I+G AAG A ++ + V+ +E G
Sbjct: 39 YVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEI 72
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 29.0 bits (66), Expect = 6.2
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 436 IIIVGASAAGCVLANRLSEVS-SLKVLLIEAGGD 468
++I+G AAG A+R+ + V + EA
Sbjct: 6 VVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEW 39
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 29.0 bits (66), Expect = 6.3
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 436 IIIVGASAAGCVLANRLSEVS-SLKVLLIEAGGD 468
+I++G+S G L + ++ E G
Sbjct: 3 VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDF 36
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 29.1 bits (66), Expect = 6.3
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 436 IIIVGASAAGCVLANRLSEVS-SLKVLLIEAGGD 468
I+I+G A G A R +S + ++++ E G
Sbjct: 4 ILIIGGVAGGASAAARARRLSETAEIIMFERGEY 37
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 29.0 bits (66), Expect = 6.8
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 436 IIIVGASAAGCVLANRLSEVS-SLKVLLIEAGGD 468
I+I+GAS AG A + ++ LI+
Sbjct: 5 IVIIGASFAGISAAIASRKKYPQAEISLIDKQAT 38
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 28.7 bits (65), Expect = 7.1
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 436 IIIVGASAAGCVLANRLSEVS-SLKVLLIEAGGD 468
I++VG A G +A RL +S +++++E G
Sbjct: 39 IVVVGGVAGGASVAARLRRLSEEDEIIMVERGEY 72
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET:
TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A*
2wes_A*
Length = 511
Score = 28.9 bits (63), Expect = 7.6
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 436 IIIVGASAAGCVLANRLSEV--SSLKVLLIEAGGDTPIH---SRIPGMSSVLSLSEFDHA 490
++IVG AG + A+ L + V L+E+G I + + D
Sbjct: 5 VVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNVRRIGVGEATFSTVRHFFDYLGLDER 64
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 28.6 bits (65), Expect = 7.6
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 436 IIIVGASAAGCVLANRLSEVS-SLKVLLIEAGGD 468
+I+VG + AG + V E +
Sbjct: 3 VIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDN 36
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 28.7 bits (65), Expect = 7.7
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 436 IIIVGASAAGCVLANRLSEVS-SLKVLLIEAGGD 468
++++GA A G A R + V +I+
Sbjct: 6 VVVIGAVALGPKAACRFKRLDPEAHVTMIDQASR 39
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.134 0.402
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,155,984
Number of extensions: 687333
Number of successful extensions: 1675
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1512
Number of HSP's successfully gapped: 198
Length of query: 720
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 620
Effective length of database: 3,909,693
Effective search space: 2424009660
Effective search space used: 2424009660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (27.1 bits)