Query psy14409
Match_columns 451
No_of_seqs 156 out of 1332
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 19:07:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14409.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14409hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 6E-132 1E-136 948.5 30.6 436 1-443 1-436 (443)
2 PLN00221 tubulin alpha chain; 100.0 8E-114 2E-118 887.5 31.2 443 1-443 1-443 (450)
3 PTZ00335 tubulin alpha chain; 100.0 1E-112 3E-117 877.7 32.0 440 1-440 1-440 (448)
4 PTZ00010 tubulin beta chain; P 100.0 2E-108 4E-113 848.2 30.1 429 1-439 1-429 (445)
5 PLN00220 tubulin beta chain; P 100.0 4E-108 8E-113 847.8 30.4 440 1-450 1-446 (447)
6 cd02186 alpha_tubulin The tubu 100.0 6E-108 1E-112 842.5 30.4 434 2-435 1-434 (434)
7 PLN00222 tubulin gamma chain; 100.0 9E-107 2E-111 835.0 31.0 434 1-442 2-448 (454)
8 cd02188 gamma_tubulin Gamma-tu 100.0 2E-106 3E-111 829.0 28.5 423 2-432 1-431 (431)
9 cd02187 beta_tubulin The tubul 100.0 3E-105 7E-110 821.1 31.2 424 2-435 1-424 (425)
10 PTZ00387 epsilon tubulin; Prov 100.0 3E-105 5E-110 824.5 29.9 419 1-440 1-454 (465)
11 KOG1374|consensus 100.0 4E-101 8E-106 737.1 27.0 430 1-438 2-442 (448)
12 cd02190 epsilon_tubulin The tu 100.0 7.2E-98 2E-102 755.5 27.0 379 2-435 1-379 (379)
13 cd02189 delta_tubulin The tubu 100.0 1.7E-97 4E-102 767.6 30.0 412 4-433 2-445 (446)
14 cd06059 Tubulin The tubulin su 100.0 1.7E-89 3.7E-94 698.7 27.0 382 3-434 1-382 (382)
15 KOG1376|consensus 100.0 3.4E-87 7.4E-92 639.4 17.2 406 1-429 1-406 (407)
16 KOG1375|consensus 100.0 6.3E-69 1.4E-73 516.6 14.2 345 46-438 8-352 (369)
17 cd00286 Tubulin_FtsZ Tubulin/F 100.0 3E-64 6.6E-69 504.3 21.6 328 3-381 1-328 (328)
18 PF00091 Tubulin: Tubulin/FtsZ 100.0 2.9E-51 6.4E-56 386.7 11.1 215 3-225 1-215 (216)
19 cd06060 misato Human Misato sh 100.0 8.3E-49 1.8E-53 404.8 29.6 414 2-434 1-493 (493)
20 smart00864 Tubulin Tubulin/Fts 100.0 2.8E-37 6.1E-42 286.1 9.6 185 51-246 3-192 (192)
21 cd02202 FtsZ_type2 FtsZ is a G 100.0 7.6E-32 1.7E-36 270.5 13.5 222 1-273 1-234 (349)
22 KOG2530|consensus 100.0 4.4E-31 9.5E-36 259.8 10.6 240 1-257 1-324 (483)
23 cd02191 FtsZ FtsZ is a GTPase 99.9 6.2E-28 1.4E-32 237.7 12.1 205 4-260 3-207 (303)
24 TIGR00065 ftsZ cell division p 99.9 5.1E-26 1.1E-30 227.6 11.8 205 4-260 20-224 (349)
25 cd02201 FtsZ_type1 FtsZ is a G 99.9 1.6E-25 3.5E-30 221.5 11.4 208 4-262 3-210 (304)
26 PRK13018 cell division protein 99.9 7.4E-24 1.6E-28 212.8 12.8 205 4-260 31-235 (378)
27 PF03953 Tubulin_C: Tubulin C- 99.9 2E-23 4.3E-28 180.3 8.8 126 263-393 1-126 (126)
28 PRK09330 cell division protein 99.9 3E-22 6.4E-27 201.4 9.9 207 3-260 15-221 (384)
29 PF14881 Tubulin_3: Tubulin do 99.8 4.3E-20 9.3E-25 168.3 10.3 132 101-244 41-180 (180)
30 PF10644 Misat_Tub_SegII: Misa 99.4 1.3E-13 2.8E-18 116.8 5.3 66 2-75 1-70 (115)
31 COG0206 FtsZ Cell division GTP 99.4 1.4E-12 3E-17 129.0 10.6 146 108-262 75-220 (338)
32 smart00865 Tubulin_C Tubulin/F 98.3 2.2E-07 4.7E-12 78.8 1.3 114 248-392 1-119 (120)
33 PF13809 Tubulin_2: Tubulin li 97.3 0.0029 6.3E-08 64.1 12.3 61 135-195 150-218 (345)
34 PLN02847 triacylglycerol lipas 66.1 14 0.00031 39.9 6.3 118 49-170 153-287 (633)
35 PRK14484 phosphotransferase ma 57.9 9.1 0.0002 32.8 2.6 42 116-160 42-83 (124)
36 PF12953 DUF3842: Domain of un 57.8 9.4 0.0002 32.8 2.7 26 144-169 7-33 (131)
37 PF03610 EIIA-man: PTS system 57.5 12 0.00026 31.2 3.4 34 115-148 40-73 (116)
38 TIGR00824 EIIA-man PTS system, 53.9 24 0.00051 29.7 4.5 36 115-150 41-76 (116)
39 PF06908 DUF1273: Protein of u 50.4 44 0.00096 30.4 6.1 109 114-240 27-135 (177)
40 cd00741 Lipase Lipase. Lipase 48.8 27 0.00058 30.4 4.3 52 106-161 2-53 (153)
41 cd00006 PTS_IIA_man PTS_IIA, P 42.7 33 0.00071 28.9 3.7 35 115-149 40-74 (122)
42 cd00519 Lipase_3 Lipase (class 40.4 27 0.00059 32.6 3.2 56 102-161 98-153 (229)
43 PF12210 Hrs_helical: Hepatocy 39.9 22 0.00049 28.7 2.1 52 378-434 28-88 (96)
44 PF01764 Lipase_3: Lipase (cla 35.1 27 0.00059 29.5 2.1 55 105-163 36-91 (140)
45 PRK09461 ansA cytoplasmic aspa 34.7 1.2E+02 0.0025 30.6 6.9 93 110-210 63-156 (335)
46 TIGR02364 dha_pts dihydroxyace 31.5 42 0.0009 28.7 2.6 29 116-145 42-71 (125)
47 PF09370 TIM-br_sig_trns: TIM- 30.9 25 0.00055 34.1 1.3 34 116-157 1-34 (268)
48 COG0572 Udk Uridine kinase [Nu 30.5 55 0.0012 30.9 3.4 27 137-164 9-35 (218)
49 COG2893 ManX Phosphotransferas 28.0 74 0.0016 27.9 3.6 55 101-156 29-83 (143)
50 PTZ00010 tubulin beta chain; P 27.8 28 0.00062 36.5 1.1 67 4-70 135-204 (445)
51 PLN02408 phospholipase A1 27.2 1.2E+02 0.0025 31.1 5.3 64 113-180 179-244 (365)
52 PF02879 PGM_PMM_II: Phosphogl 26.5 50 0.0011 26.7 2.2 27 133-159 20-46 (104)
53 PRK13660 hypothetical protein; 26.2 2.2E+02 0.0047 26.1 6.5 104 114-240 27-135 (182)
54 PF01713 Smr: Smr domain; Int 26.2 2.4E+02 0.0051 21.7 6.0 53 116-171 9-67 (83)
55 cd00411 Asparaginase Asparagin 26.1 2.2E+02 0.0048 28.5 7.1 92 111-210 61-154 (323)
56 PF08259 Periviscerokin: Periv 23.8 36 0.00079 16.3 0.5 8 257-264 3-10 (11)
57 PF00710 Asparaginase: Asparag 23.1 2.4E+02 0.0053 28.0 6.8 93 110-210 54-147 (313)
58 COG1528 Ftn Ferritin-like prot 22.7 42 0.00092 30.2 1.1 39 378-416 91-131 (167)
59 PLN00131 hypothetical protein; 22.0 1.1E+02 0.0023 27.2 3.4 37 108-150 55-91 (218)
60 COG1929 Glycerate kinase [Carb 20.5 2.2E+02 0.0048 29.0 5.7 101 90-210 195-301 (378)
61 PRK15088 PTS system mannose-sp 20.3 1.2E+02 0.0026 30.4 3.9 36 115-150 42-77 (322)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=5.7e-132 Score=948.49 Aligned_cols=436 Identities=62% Similarity=1.087 Sum_probs=420.7
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccceeeeCCCCccccceeEeCCCCcccccccc
Q psy14409 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRT 80 (451)
Q Consensus 1 MrEiitiq~Gq~Gn~IG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~lliD~e~~~i~~~~~ 80 (451)
||||||||+||||||||++||+++|+||||.++|.+.+... ...++.++||+|.+.++|+||||+||+||++|+.++.
T Consensus 1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~--~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~ 78 (443)
T COG5023 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSD--EGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRN 78 (443)
T ss_pred CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcc--cccccccceeeecCCCccccceEEEecCcchHhhhcc
Confidence 99999999999999999999999999999999998655433 4457899999999999999999999999999999999
Q ss_pred ccccccCCccccccCCccccCccCccccccchhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhhh
Q psy14409 81 GTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVD 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~ 160 (451)
|+|+.+|+|++++.+++|+|||||+|+|+.|+++.|.++|+|||++|.||.||||+++||+|||||||+|+.|+|+|+++
T Consensus 79 g~y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~e 158 (443)
T COG5023 79 GPYGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREE 158 (443)
T ss_pred CccccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCCCCCccchhhHHHHhhhhhccccceeEEecchhHHhhhhccCCCCCCChhhhhHHHHHhhhcCcc
Q psy14409 161 YGKKSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240 (451)
Q Consensus 161 y~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~ 240 (451)
||||.+.+++|+|.++.++++|||||++|++++|.++||+++++||++|+++|.+.|++++|+|.++|++||++++++|.
T Consensus 159 ypkK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTt 238 (443)
T COG5023 159 YPKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTT 238 (443)
T ss_pred cchhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhh
Confidence 99999999999999899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcccccccccCCccCCccccccccccccCchhhhcccccCHHHHHHhhcCCCCCccccCCCCCceeeeecccc
Q psy14409 241 SLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYR 320 (451)
Q Consensus 241 ~~r~~~~~~~~l~~~~~~L~p~p~~~f~~~s~~pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~ls~~~~~R 320 (451)
++||||++|.||+++.+||||+||+||+.++|+|+++..+..+++.++.++++++|+++|||.+|+|+.++|++++.++|
T Consensus 239 slRfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~r 318 (443)
T COG5023 239 SLRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFR 318 (443)
T ss_pred eeecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHhhhccCccCceecCCCCceeeecCCCCcccCCCCccchhchhhhccCCchHHHHHHHHHHHHHHHhh
Q psy14409 321 GDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYA 400 (451)
Q Consensus 321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~~~~ 400 (451)
|++.++++++++.+++.|++.+|++|+|+++++++|+.+|. ...+++.++++|+|+|+|...|+++.+||++||+
T Consensus 319 G~v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~-----~~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf~ 393 (443)
T COG5023 319 GDVDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPS-----EPAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFK 393 (443)
T ss_pred cCCCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCc-----ccccceeeeEeecCcHHHHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999999999999999999883 3345678899999999999999999999999999
Q ss_pred cccceeccccCCCCcchHHHHHHHHHHHHHHHHHhccccCCCC
Q psy14409 401 KRAFIHWYVGEGMEEGEFSEAREDLGALEKDYEEMGEEAGEGG 443 (451)
Q Consensus 401 rkAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~~~~~~ 443 (451)
||||||||+++||||+||.||++.+++|.++|++++.+..+++
T Consensus 394 krAFlhwY~~egmee~EFsEare~~~~L~~eY~~~~~~s~~~~ 436 (443)
T COG5023 394 KRAFLHWYVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDD 436 (443)
T ss_pred hhHHHHHHhhccCcccchhhHHHHHHHHHHHHHHhccccccch
Confidence 9999999999999999999999999999999999987765544
No 2
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=7.8e-114 Score=887.46 Aligned_cols=443 Identities=84% Similarity=1.397 Sum_probs=418.2
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccceeeeCCCCccccceeEeCCCCcccccccc
Q psy14409 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRT 80 (451)
Q Consensus 1 MrEiitiq~Gq~Gn~IG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~lliD~e~~~i~~~~~ 80 (451)
||||||||+||||||||.+||+++++||+++++|............++.++||+|..+++|+|||||||+||++|++++.
T Consensus 1 m~EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (450)
T PLN00221 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhcc
Confidence 99999999999999999999999999999999987643322112245789999999999999999999999999999999
Q ss_pred ccccccCCccccccCCccccCccCccccccchhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhhh
Q psy14409 81 GTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVD 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~ 160 (451)
++++++|+|++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+
T Consensus 81 ~~~~~lf~~~~~i~~~~gagNnwa~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~ 160 (450)
T PLN00221 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (450)
T ss_pred CccccccCccceeccCCCccccccccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCCCCCccchhhHHHHhhhhhccccceeEEecchhHHhhhhccCCCCCCChhhhhHHHHHhhhcCcc
Q psy14409 161 YGKKSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240 (451)
Q Consensus 161 y~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~ 240 (451)
||++.+.+++|+|+...+++++++||++|+|++|.+++|+++++||++|+++|.+.+++++|+|+++|++||++|+++|+
T Consensus 161 y~~~~~~~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~p~~~dlN~lIa~~is~~T~ 240 (450)
T PLN00221 161 YGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTA 240 (450)
T ss_pred cccccceeeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccc
Confidence 99999999999998767889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcccccccccCCccCCccccccccccccCchhhhcccccCHHHHHHhhcCCCCCccccCCCCCceeeeecccc
Q psy14409 241 SLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYR 320 (451)
Q Consensus 241 ~~r~~~~~~~~l~~~~~~L~p~p~~~f~~~s~~pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~ls~~~~~R 320 (451)
++||||.++.|++++++||||||++||++++++|+.+.....++.+++.+|+.++|++.++++.++|+.++||++++++|
T Consensus 241 s~RF~g~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~l~~~~~~~~kyla~~~~~R 320 (450)
T PLN00221 241 SLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYR 320 (450)
T ss_pred cccccccccCCHHHHHHhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhcccceeeecCCCcchHHHHHHHHc
Confidence 99999999999999999999999999999999999887777778899999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHhhhccCccCceecCCCCceeeecCCCCcccCCCCccchhchhhhccCCchHHHHHHHHHHHHHHHhh
Q psy14409 321 GDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYA 400 (451)
Q Consensus 321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~~~~ 400 (451)
|++.+.++.+.+.+++.++++.|++|+|+++++++|.++|...+...+.+..+++++++|+|+|..+|+++.++|++||+
T Consensus 321 G~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~i~~~~~~~~~~~~~~~~~~s~~~l~NstsI~~~f~~i~~~f~~mf~ 400 (450)
T PLN00221 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYA 400 (450)
T ss_pred CCCCHHHHHHHHHHHHhcCCccccccCCCCEeeeecCCCCccCCCccccccceeEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999988888889999999999999999999887777777767788999999999999999999999999999
Q ss_pred cccceeccccCCCCcchHHHHHHHHHHHHHHHHHhccccCCCC
Q psy14409 401 KRAFIHWYVGEGMEEGEFSEAREDLGALEKDYEEMGEEAGEGG 443 (451)
Q Consensus 401 rkAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~~~~~~ 443 (451)
||||||||+++||||+||.||+++|++++++|++++....++.
T Consensus 401 rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~~~~~ 443 (450)
T PLN00221 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGE 443 (450)
T ss_pred hcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 9999999999999999999999999999999999977766654
No 3
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=1.4e-112 Score=877.67 Aligned_cols=440 Identities=85% Similarity=1.384 Sum_probs=415.5
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccceeeeCCCCccccceeEeCCCCcccccccc
Q psy14409 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRT 80 (451)
Q Consensus 1 MrEiitiq~Gq~Gn~IG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~lliD~e~~~i~~~~~ 80 (451)
||||||||+||||||||.+||+++++||+++++|............++.++||+|..+++|+|||||||+||++|++++.
T Consensus 1 M~EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (448)
T PTZ00335 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRT 80 (448)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhccc
Confidence 99999999999999999999999999999999987643322112245789999999999999999999999999999999
Q ss_pred ccccccCCccccccCCccccCccCccccccchhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhhh
Q psy14409 81 GTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVD 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~ 160 (451)
++++++|++++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+
T Consensus 81 ~~~~~l~~~~~~i~~~~gagnnwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~ 160 (448)
T PTZ00335 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVD 160 (448)
T ss_pred CccccccCchheeecCCCCCCcccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCCCCCccchhhHHHHhhhhhccccceeEEecchhHHhhhhccCCCCCCChhhhhHHHHHhhhcCcc
Q psy14409 161 YGKKSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240 (451)
Q Consensus 161 y~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~ 240 (451)
||++.+++++|+|+...+++++++||++|+|++|.+++|+++++||++|+++|.+.+++..++|+++|++||++|+++|+
T Consensus 161 yp~~~~~~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~~~~~~~~~~~~~~N~~Ia~~is~~t~ 240 (448)
T PTZ00335 161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTA 240 (448)
T ss_pred ccccceeeEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHHHHhcCCCCCCHHHHHHHHHhhhccccc
Confidence 99999999999998767899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcccccccccCCccCCccccccccccccCchhhhcccccCHHHHHHhhcCCCCCccccCCCCCceeeeecccc
Q psy14409 241 SLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYR 320 (451)
Q Consensus 241 ~~r~~~~~~~~l~~~~~~L~p~p~~~f~~~s~~pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~ls~~~~~R 320 (451)
++||||.++.|++++.+||||||++||++++++|+.+.....++.+++.+|+.++|++.++++.++|+.++||++++++|
T Consensus 241 ~~rf~g~~~~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~~~ls~~~~~R 320 (448)
T PTZ00335 241 SLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACCLMYR 320 (448)
T ss_pred ccccccccCCCHHHHhccccCCCCceecccccCcccccccccccCCCHHHHHHHhcCccceeEecCCCccchHHHHHHHc
Confidence 99999999999999999999999999999999999987777788999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHhhhccCccCceecCCCCceeeecCCCCcccCCCCccchhchhhhccCCchHHHHHHHHHHHHHHHhh
Q psy14409 321 GDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYA 400 (451)
Q Consensus 321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~~~~ 400 (451)
|+..+.++.+.+.+++.++...|++|+|+++++++|.++|...+...+.+..+++++++|+|+|..+|++++++|++||+
T Consensus 321 G~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lsNstsI~~~f~~i~~~f~~mf~ 400 (448)
T PTZ00335 321 GDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYA 400 (448)
T ss_pred CCCCHHHHHHHHHHHHhhCCCcCCccCCCCEeeeecCCCCccCCCccccccceEEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999998988889999999999999999999887777777666788999999999999999999999999999
Q ss_pred cccceeccccCCCCcchHHHHHHHHHHHHHHHHHhccccC
Q psy14409 401 KRAFIHWYVGEGMEEGEFSEAREDLGALEKDYEEMGEEAG 440 (451)
Q Consensus 401 rkAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~~~ 440 (451)
||||||||+++||||+||.||+++|++++++|+++..+..
T Consensus 401 rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~~ 440 (448)
T PTZ00335 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESA 440 (448)
T ss_pred hcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccch
Confidence 9999999999999999999999999999999999864444
No 4
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=1.8e-108 Score=848.24 Aligned_cols=429 Identities=43% Similarity=0.820 Sum_probs=406.8
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccceeeeCCCCccccceeEeCCCCcccccccc
Q psy14409 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRT 80 (451)
Q Consensus 1 MrEiitiq~Gq~Gn~IG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~lliD~e~~~i~~~~~ 80 (451)
|||||+||+||||||||.+||+++++||+++++|.+...++. ..++.++||+|..+++|+||+|+||+||++|+.++.
T Consensus 1 M~Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~~~~~--~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~ 78 (445)
T PTZ00010 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDL--QLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRA 78 (445)
T ss_pred CCcEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCCCCcc--cccccceeecccCCCceEEeeeeccCChhhhhhhcc
Confidence 999999999999999999999999999999988876443221 235778999999999999999999999999999988
Q ss_pred ccccccCCccccccCCccccCccCccccccchhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhhh
Q psy14409 81 GTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVD 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~ 160 (451)
++++++|++++++.+++|+|||||+||+..|+++.++++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+
T Consensus 79 ~~~~~lf~~~~~~~~~~gagNnwa~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~de 158 (445)
T PTZ00010 79 GPYGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREE 158 (445)
T ss_pred cchhhhcCccceeecccCCccccccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHhh
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCCCCCccchhhHHHHhhhhhccccceeEEecchhHHhhhhccCCCCCCChhhhhHHHHHhhhcCcc
Q psy14409 161 YGKKSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240 (451)
Q Consensus 161 y~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~ 240 (451)
||++.+.+++|+|+...+++++++||++|++++|.+++|++++|||++|+++|.+.+++++|+|.++|++||++|+++|+
T Consensus 159 y~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~l~~~~p~~~~lN~lIaq~is~~t~ 238 (445)
T PTZ00010 159 YPDRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGVTC 238 (445)
T ss_pred CCccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHHHHhccCCCCCHHHHHHHHHhhcccccc
Confidence 99999999999998767899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcccccccccCCccCCccccccccccccCchhhhcccccCHHHHHHhhcCCCCCccccCCCCCceeeeecccc
Q psy14409 241 SLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYR 320 (451)
Q Consensus 241 ~~r~~~~~~~~l~~~~~~L~p~p~~~f~~~s~~pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~ls~~~~~R 320 (451)
++||||.+|.|++++.+||||||++||++++++|+.+.....++.+++.+|++++|++++++.+++|+.++|+|+++++|
T Consensus 239 ~~Rfpg~ln~dl~~l~tnLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~k~la~~~~~R 318 (445)
T PTZ00010 239 CLRFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKNMMCAADPRHGRYLTASALFR 318 (445)
T ss_pred ceecCCcccccHHHHHHHHhcCCCceeeecccCccccccccccccCCHHHHHHhHhcccceEeecCCCcchhHHHHHHHc
Confidence 99999999999999999999999999999999999987767778899999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHhhhccCccCceecCCCCceeeecCCCCcccCCCCccchhchhhhccCCchHHHHHHHHHHHHHHHhh
Q psy14409 321 GDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYA 400 (451)
Q Consensus 321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~~~~ 400 (451)
|++.++++.+.+..++.++++.|++|+|+++++++|.++|. +.++++++++|+|+|..+|+++.++|++||+
T Consensus 319 G~~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~--------~~~~s~~~lsNstsi~~~~~~i~~~f~~m~~ 390 (445)
T PTZ00010 319 GRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPK--------GLKMSVTFIGNSTAIQEMFRRVGEQFTAMFR 390 (445)
T ss_pred CCCCHHHHHHHHHHHHhhCCccCccccCCCEEEeecCcCCc--------CccceEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999988888889999999999999999988774 2467899999999999999999999999999
Q ss_pred cccceeccccCCCCcchHHHHHHHHHHHHHHHHHhcccc
Q psy14409 401 KRAFIHWYVGEGMEEGEFSEAREDLGALEKDYEEMGEEA 439 (451)
Q Consensus 401 rkAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~~ 439 (451)
||||||||+++||||+||.||+++|++++++|+++....
T Consensus 391 rrAflh~Y~~eGmee~ef~EA~~~l~~li~~Y~~~~~~~ 429 (445)
T PTZ00010 391 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429 (445)
T ss_pred cCchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999987665
No 5
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=3.9e-108 Score=847.83 Aligned_cols=440 Identities=42% Similarity=0.801 Sum_probs=410.6
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccceeeeCCCCccccceeEeCCCCcccccccc
Q psy14409 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRT 80 (451)
Q Consensus 1 MrEiitiq~Gq~Gn~IG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~lliD~e~~~i~~~~~ 80 (451)
|||||+||+||||||||.+||+++++||+++++|.+....+ ...+..++||+|.++++|+||+||||+||++|++++.
T Consensus 1 m~Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~--~~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~ 78 (447)
T PLN00220 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSD--LQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRS 78 (447)
T ss_pred CCceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCCcc--cccccccceeccCCCCcccceeEecCCcHHHHHHHhc
Confidence 99999999999999999999999999999998887644322 1235778999999999999999999999999999999
Q ss_pred ccccccCCccccccCCccccCccCccccccchhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhhh
Q psy14409 81 GTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVD 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~ 160 (451)
++++++|++++++.+++|+|||||+|||..|+++.++++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+
T Consensus 79 ~~~~~~~~~~~~~~~~~gagnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~ 158 (447)
T PLN00220 79 GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (447)
T ss_pred CccccccCccceEecccCCCCccCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHh
Confidence 99989999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCCCCCccchhhHHHHhhhhhccccceeEEecchhHHhhhhccCCCCCCChhhhhHHHHHhhhcCcc
Q psy14409 161 YGKKSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240 (451)
Q Consensus 161 y~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~ 240 (451)
||++.+++++|+|++..+++++++||++|+|++|.+++|+++++||++|.++|.+.+++..++|+++|++||+.++++|+
T Consensus 159 y~~~~~~~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~~~~~~i~~~sf~~~N~lIa~~is~it~ 238 (447)
T PLN00220 159 YPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238 (447)
T ss_pred ccccceeeeEEECCCcCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHHHHHHhhcCCCCChHHHHhHhhccccccch
Confidence 99999999999998767899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcccccccccCCccCCccccccccccccCchhhhcccccCHHHHHHhhcCCCCCccccCCCCCceeeeecccc
Q psy14409 241 SLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYR 320 (451)
Q Consensus 241 ~~r~~~~~~~~l~~~~~~L~p~p~~~f~~~s~~pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~ls~~~~~R 320 (451)
++||||.++.++.+++++|||+|++||++++++|+.+.....++.+++.+++++++++++++.++++.+++|+++++++|
T Consensus 239 slRFpG~ln~~l~~l~~nLVP~P~l~Fl~~s~~P~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~gk~la~~~~~R 318 (447)
T PLN00220 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFR 318 (447)
T ss_pred hhccCCcCCccHHHHHHHhCCccceeEeecccCcccccccccccccCHHHHHHHHHhhhhcccccCCCCchhHHHHHHHc
Confidence 99999999999999999999999999999999999877666678899999999999999999888888999999999999
Q ss_pred ccCChhhHHHHHHhhhccCccCceecCCCCceeeecCCCCcccCCCCccchhchhhhccCCchHHHHHHHHHHHHHHHhh
Q psy14409 321 GDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYA 400 (451)
Q Consensus 321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~~~~ 400 (451)
|++++.++.+.+..++.++++.|++|+|+++++++|.++|. +.++++++++|+|+|..+|+++.++|++||+
T Consensus 319 G~~~~~ev~~~~~~l~~~~~~~f~~W~p~~~~~~~~~~~~~--------~~~~s~~~l~N~t~i~~~~~~i~~~f~~m~~ 390 (447)
T PLN00220 319 GKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPK--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFR 390 (447)
T ss_pred CCCCHHHHHHHHHHHHhhCCCccccccCCCEEEeecCCCCC--------CcceeeEEecCchHHHHHHHHHHHHHHHHHh
Confidence 99999999999888888888999999999999999988774 2357899999999999999999999999999
Q ss_pred cccceeccccCCCCcchHHHHHHHHHHHHHHHHHhccc------cCCCCCCcccCC
Q psy14409 401 KRAFIHWYVGEGMEEGEFSEAREDLGALEKDYEEMGEE------AGEGGEDAEEGE 450 (451)
Q Consensus 401 rkAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~------~~~~~~~~~~~~ 450 (451)
||||||||+++||||+||.||+++|++++++|+++... +.||+++|+|||
T Consensus 391 rkAflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~~~~~~~~~~~~~~~~~~~~~~~ 446 (447)
T PLN00220 391 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEDEEEEEEYE 446 (447)
T ss_pred cCcchhhhcccCCchHHHHHHHHHHHHHHHHHHHHHhccccccccccccccchhcc
Confidence 99999999999999999999999999999999887653 344445555555
No 6
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=6.4e-108 Score=842.55 Aligned_cols=434 Identities=91% Similarity=1.480 Sum_probs=410.9
Q ss_pred EeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccceeeeCCCCccccceeEeCCCCccccccccc
Q psy14409 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRTG 81 (451)
Q Consensus 2 rEiitiq~Gq~Gn~IG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~lliD~e~~~i~~~~~~ 81 (451)
||||+||+||||||||.+||+++++||+++++|........+...+..++||+|..+++|+||||+||+||++|++++.+
T Consensus 1 ~EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~~ 80 (434)
T cd02186 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRTG 80 (434)
T ss_pred CceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhccC
Confidence 79999999999999999999999999999999876443322223467899999999999999999999999999999988
Q ss_pred cccccCCccccccCCccccCccCccccccchhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhhhc
Q psy14409 82 TYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDY 161 (451)
Q Consensus 82 ~~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~y 161 (451)
+++.+|++++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+|
T Consensus 81 ~~~~l~~~~~~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y 160 (434)
T cd02186 81 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDY 160 (434)
T ss_pred ccccccCccceeecCCCCCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEecCCCCCCccchhhHHHHhhhhhccccceeEEecchhHHhhhhccCCCCCCChhhhhHHHHHhhhcCccc
Q psy14409 162 GKKSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITAS 241 (451)
Q Consensus 162 ~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~ 241 (451)
|++.+.+++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.++++.++|+++|++||++|+++|++
T Consensus 161 ~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~lN~iIa~~l~~~t~~ 240 (434)
T cd02186 161 GKKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITAS 240 (434)
T ss_pred CccceeeEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccc
Confidence 99999999999986677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcccccccccCCccCCccccccccccccCchhhhcccccCHHHHHHhhcCCCCCccccCCCCCceeeeeccccc
Q psy14409 242 LRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRG 321 (451)
Q Consensus 242 ~r~~~~~~~~l~~~~~~L~p~p~~~f~~~s~~pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~ls~~~~~RG 321 (451)
+||||.++.|+++++++|||||++||++++++|+.+.....++.+++.+|++++|++.++|+.++++.++||++++++||
T Consensus 241 ~rf~g~~~~~l~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~~~la~~~~~RG 320 (434)
T cd02186 241 LRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRG 320 (434)
T ss_pred eecCCccCCCHHHHHhhccccccceeeccccCcccchhhccccCCCHHHHHHHHhCccceeeecCCcchhHHHHHHHHcC
Confidence 99999999999999999999999999999999999877777889999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHhhhccCccCceecCCCCceeeecCCCCcccCCCCccchhchhhhccCCchHHHHHHHHHHHHHHHhhc
Q psy14409 322 DVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAK 401 (451)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~~~~r 401 (451)
++.+.++.+.+..++.++.+.|++|+|+++++++|.++|...+...+.+.++++++++|+|+|..+|++++++|++||+|
T Consensus 321 ~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~f~~i~~~f~~mf~r 400 (434)
T cd02186 321 DVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLDHKFDLMYSK 400 (434)
T ss_pred CCCHHHHHHHHHHHHHhCCCcCcccCCCcEeeeecCCCCccCCCccccccceEEEEecCchHHHHHHHHHHHHHHHHHhh
Confidence 99999999999888888889999999999999999999877777777677889999999999999999999999999999
Q ss_pred ccceeccccCCCCcchHHHHHHHHHHHHHHHHHh
Q psy14409 402 RAFIHWYVGEGMEEGEFSEAREDLGALEKDYEEM 435 (451)
Q Consensus 402 kAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~ 435 (451)
|||||||+++||||+||.||+++|++++++|+++
T Consensus 401 kAflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~~ 434 (434)
T cd02186 401 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 434 (434)
T ss_pred cchhhhhcCcCCchHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999863
No 7
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=8.9e-107 Score=834.97 Aligned_cols=434 Identities=32% Similarity=0.575 Sum_probs=400.8
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccceeeeCCCCccccceeEeCCCCcccccccc
Q psy14409 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRT 80 (451)
Q Consensus 1 MrEiitiq~Gq~Gn~IG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~lliD~e~~~i~~~~~ 80 (451)
|||||+||+||||||||.+||+++++||+++++|.+..+.+ ...++.++||+|.++++|+|||||||+||++|++++.
T Consensus 2 m~EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~~~--~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~ 79 (454)
T PLN00222 2 PREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAT--QGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQN 79 (454)
T ss_pred CccEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCccc--cccccccceeEEcCCCcccceeeecCCCcchhhhhcc
Confidence 69999999999999999999999999999998887643322 1245789999999999999999999999999999998
Q ss_pred ccccccCCccccccCCc--cccCccCccccccchhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhh
Q psy14409 81 GTYRQLFHPEQLISGKE--DAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERIS 158 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~--gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~ 158 (451)
++++++|++++++.+++ |+||||++||+ .|+++.++++|+||+++|.||++|||+++||++||||||+|++|+|.|+
T Consensus 80 ~~~~~lf~~~~~~~~~~~~gagnn~a~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~ 158 (454)
T PLN00222 80 SEYRNLYNHENIFVSDHGGGAGNNWASGYH-QGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALN 158 (454)
T ss_pred CccccccCccceeecccCCCcccchHHhHH-HHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHHH
Confidence 88889999999999996 69999999955 7999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcceeEEEEecCC-CCCCccchhhHHHHhhhhhccccceeEEecchhHHhhhhccCCCCCCChhhhhHHHHHhhhc
Q psy14409 159 VDYGKKSKLQYAIYPAP-QVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSS 237 (451)
Q Consensus 159 d~y~~~~i~~~~v~P~~-~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~ 237 (451)
|+||++.+++++|+|+. ..+++++++||++|+|++|.+++|+++++||++|+++|.+.+++++|+|.++|++||++|++
T Consensus 159 d~y~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic~~~l~i~~p~~~dlN~lIA~~ls~ 238 (454)
T PLN00222 159 DRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSA 238 (454)
T ss_pred hhcCCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHHHHhcCCCCCCHHHHHHHhccccCC
Confidence 99999999999999985 35788999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCcccccccccCCccCCccccccccccccCchh-hhcccccCHHHHHHhhcCCCCCccccCCCC-----Cc
Q psy14409 238 ITASLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAE-KAYHEQLSVAEITNACFEPANQMVKCDPRH-----GK 311 (451)
Q Consensus 238 ~t~~~r~~~~~~~~l~~~~~~L~p~p~~~f~~~s~~pl~~~~-~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~-----~~ 311 (451)
+|+++||||.+|.|++++.+||||||++||++++++|+.+.. ...++..++.+++.++|+++++|..++|+. ++
T Consensus 239 ~T~s~Rfpg~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~~~~~l~~~~n~~~~~~~~~~~~~~~k 318 (454)
T PLN00222 239 STTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAK 318 (454)
T ss_pred cccccCCCCccCCCHHHHhhhcCCCCCceeeccccccccccccccceeeCCHHHHHHHHhcccCceeecCCccccccccc
Confidence 999999999999999999999999999999999999997642 345678899999999999999999888777 89
Q ss_pred eeeeeccccccCChhhHHHHHHhhhccCccCceecCCCCceeeecCCCCcccCCCCccchhchhhhccCCchHHHHHHHH
Q psy14409 312 YMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGRL 391 (451)
Q Consensus 312 ~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l 391 (451)
|||+++++||++.+.++.+.+..++.++++.|++|+|+++++++|.++|...+ +.+.++++|+|+|+|..+|+++
T Consensus 319 ~la~~~~~RG~~~~~~v~~~~~~~~~~~~~~fv~W~p~~~k~~~~~~~~~~~~-----~~~~s~~~lsNst~I~~~f~~i 393 (454)
T PLN00222 319 YISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQT-----AHRVSGLMLANHTSIRHLFSKC 393 (454)
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHhhhCCccccccCCCCEeeeeccCCCCCCC-----CCceEEEEEeCCHHHHHHHHHH
Confidence 99999999999999999999988998888999999999999999998775322 2356799999999999999999
Q ss_pred HHHHHHHhhcccceeccccCCCC----cchHHHHHHHHHHHHHHHHHhccccCCC
Q psy14409 392 DHKFDLMYAKRAFIHWYVGEGME----EGEFSEAREDLGALEKDYEEMGEEAGEG 442 (451)
Q Consensus 392 ~~~~~~~~~rkAflH~Y~~~Gme----e~eF~Ea~~~l~~l~~~Y~~~~~~~~~~ 442 (451)
.++|++||+||||||||+++||+ ++||.||+++|++|+++|++++..+.+|
T Consensus 394 ~~~f~~mf~rkAflH~Y~~~G~~~d~ee~eF~ea~~~l~~li~~Y~~~~~~~y~~ 448 (454)
T PLN00222 394 LSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESREIVESLVDEYKACESPDYIK 448 (454)
T ss_pred HHHHHHHHhhCccceeecCCCcccCcchhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999993 8999999999999999999987555433
No 8
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=1.6e-106 Score=829.03 Aligned_cols=423 Identities=35% Similarity=0.658 Sum_probs=397.0
Q ss_pred EeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccceeeeCCCCccccceeEeCCCCccccccccc
Q psy14409 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRTG 81 (451)
Q Consensus 2 rEiitiq~Gq~Gn~IG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~lliD~e~~~i~~~~~~ 81 (451)
||||+||+||||||||.+||+++++||+++++|....+.. ...+..++||+|.++++|+|||||||+||++|++++.+
T Consensus 1 ~EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~~~--~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~ 78 (431)
T cd02188 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFAT--DGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNS 78 (431)
T ss_pred CcEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCCcc--ccccccceeEEECCCCccCCcceeccCCcchhhhhhcC
Confidence 7999999999999999999999999999998887644321 12457889999999999999999999999999999999
Q ss_pred cccccCCccccccCCc--cccCccCccccccchhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhh
Q psy14409 82 TYRQLFHPEQLISGKE--DAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISV 159 (451)
Q Consensus 82 ~~~~~~~~~~~~~~~~--gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d 159 (451)
+++++|+|++++.+++ |+||||++||+ .|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|+|+|
T Consensus 79 ~~~~lf~~~~~~~~~~~~gagnnwa~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d 157 (431)
T cd02188 79 EYRNLYNPENIFLSKHGGGAGNNWASGYS-QGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLND 157 (431)
T ss_pred ccccccCccceEeeccCCCccccHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHh
Confidence 8889999999999997 99999999955 69999999999999999999999999999999999999999999999999
Q ss_pred hcCCcceeEEEEecCCCC-CCccchhhHHHHhhhhhccccceeEEecchhHHhhhhccCCCCCCChhhhhHHHHHhhhcC
Q psy14409 160 DYGKKSKLQYAIYPAPQV-STSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSI 238 (451)
Q Consensus 160 ~y~~~~i~~~~v~P~~~~-~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~ 238 (451)
+||++.+++++|+|+... +++++++||++|+|++|.+++|+++++||++|.++|.+.++++.|+|.++|++||++|+++
T Consensus 158 ~y~~~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~ls~~ 237 (431)
T cd02188 158 RYPKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSAS 237 (431)
T ss_pred HcCcceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecchHHHHHHHHHhcCCCCCCHHHHHHHHhccCCCc
Confidence 999999999999998553 5889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCcccccccccCCccCCccccccccccccCchh-hhcccccCHHHHHHhhcCCCCCccccCC-CCCceeeee
Q psy14409 239 TASLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAE-KAYHEQLSVAEITNACFEPANQMVKCDP-RHGKYMACC 316 (451)
Q Consensus 239 t~~~r~~~~~~~~l~~~~~~L~p~p~~~f~~~s~~pl~~~~-~~~~~~~~~~~l~~~~~~~~n~~~~~~~-~~~~~ls~~ 316 (451)
|+++||||.+|.|++++.+||||||++||++++++|+.+.. ...++.+++.+|++.+|++.|+|+.+++ +.++|||++
T Consensus 238 t~~~Rf~g~ln~dl~~i~tnLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~l~~~l~~~~n~m~~~~~~~~~k~la~~ 317 (431)
T cd02188 238 TTTLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQPKNIMVSTATRKNGCYISIL 317 (431)
T ss_pred ccceecCCccCCCHHHHHHhcCCCCCceeeccccCccccchhhcceecCCHHHHHHHHhccccceeecCCCccchhHHHH
Confidence 99999999999999999999999999999999999998876 4667889999999999999999999998 889999999
Q ss_pred ccccccCChhhHHHHHHhhhccCccCceecCCCCceeeecCCCCcccCCCCccchhchhhhccCCchHHHHHHHHHHHHH
Q psy14409 317 MLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFD 396 (451)
Q Consensus 317 ~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~ 396 (451)
+++||++.+.++.+.+.+++.+..+.|++|+|+++++++|.++|...++ .+.++++++|+|+|..+|+++.++|+
T Consensus 318 ~~~RG~~~~~~~~~~~~~lk~~~~~~f~~W~p~~~~~~~~~~~~~~~~~-----~~~s~~~lsNst~I~~~f~~i~~kf~ 392 (431)
T cd02188 318 NIIQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQVALSKKSPYVPTA-----HRVSGLMLANHTSIASLFERILKQFD 392 (431)
T ss_pred HHHcCCCCHHHHHHHHHHHHhhccccCcccCCCCEEEEEeccCCccCCC-----CceeEEEecCChHHHHHHHHHHHHHH
Confidence 9999999999999999889888888899999999999999888764332 35679999999999999999999999
Q ss_pred HHhhcccceeccccCCCC---cchHHHHHHHHHHHHHHH
Q psy14409 397 LMYAKRAFIHWYVGEGME---EGEFSEAREDLGALEKDY 432 (451)
Q Consensus 397 ~~~~rkAflH~Y~~~Gme---e~eF~Ea~~~l~~l~~~Y 432 (451)
+||+||||||||+++||| |+||.||+++|++|+++|
T Consensus 393 ~mf~krAflH~Y~~eGme~~~e~eF~ea~~~l~~li~~Y 431 (431)
T cd02188 393 KLRKRRAFLDNYRKEDMFSDNLDEFDESREVVQSLIEEY 431 (431)
T ss_pred HHHhhCchhhhccCcCccccchhHHHHHHHHHHHHHHhC
Confidence 999999999999999999 999999999999999998
No 9
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=3.3e-105 Score=821.08 Aligned_cols=424 Identities=43% Similarity=0.823 Sum_probs=400.6
Q ss_pred EeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccceeeeCCCCccccceeEeCCCCccccccccc
Q psy14409 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRTG 81 (451)
Q Consensus 2 rEiitiq~Gq~Gn~IG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~lliD~e~~~i~~~~~~ 81 (451)
||||+||+||||||||.+||+++++||+++++|.+..... ...+..++||+|.++++|+||+|+||+||++|++++.+
T Consensus 1 ~eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~--~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~ 78 (425)
T cd02187 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSD--LQLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSG 78 (425)
T ss_pred CceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCCcc--ccccccceeEEecCCCceeeeeeeccCChhhhhhhhcC
Confidence 7999999999999999999999999999998886533322 12356789999999999999999999999999999888
Q ss_pred cccccCCccccccCCccccCccCccccccchhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhhhc
Q psy14409 82 TYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDY 161 (451)
Q Consensus 82 ~~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~y 161 (451)
+++++|++++++.+++|+||||++||+..|+++.++++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+|
T Consensus 79 ~~~~l~~~~~~~~~~~gagnnwa~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y 158 (425)
T cd02187 79 PFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEY 158 (425)
T ss_pred cccceecCcceeeccCCCCCccCccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHhc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEecCCCCCCccchhhHHHHhhhhhccccceeEEecchhHHhhhhccCCCCCCChhhhhHHHHHhhhcCccc
Q psy14409 162 GKKSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITAS 241 (451)
Q Consensus 162 ~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~ 241 (451)
|++.+++++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.+++.+++|+++|++||++|+++|++
T Consensus 159 ~~~~~~~~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~~~~~~~~~~~~N~~ia~~is~~t~s 238 (425)
T cd02187 159 PDRIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTC 238 (425)
T ss_pred CCcceEEEEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHHHHhcCCCCCCHHHHHHHHhcccccccee
Confidence 99999999999986667999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcccccccccCCccCCccccccccccccCchhhhcccccCHHHHHHhhcCCCCCccccCCCCCceeeeeccccc
Q psy14409 242 LRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRG 321 (451)
Q Consensus 242 ~r~~~~~~~~l~~~~~~L~p~p~~~f~~~s~~pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~ls~~~~~RG 321 (451)
+||||.+|.|++++.+||||||++||++++++|+.+.....++.+++.+|++++|++++++..++|++++|||+++++||
T Consensus 239 ~Rfpg~~n~dl~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~~~~la~~~~~RG 318 (425)
T cd02187 239 LRFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTAAAIFRG 318 (425)
T ss_pred eecCCccccCHHHHHHhcCCCCCceecccccCccccccccccccCCHHHHHHHHhCccCeeeccCCCcchHHHHHHHHcC
Confidence 99999999999999999999999999999999999876666788999999999999999998888889999999999999
Q ss_pred cCChhhHHHHHHhhhccCccCceecCCCCceeeecCCCCcccCCCCccchhchhhhccCCchHHHHHHHHHHHHHHHhhc
Q psy14409 322 DVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAK 401 (451)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~~~~r 401 (451)
++.+.++.+.+.+++.++.+.|++|+|+++++++|.++|. +.++++++++|+|+|..+|+++.++|++||+|
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~--------~~~~s~~~l~N~t~i~~~~~~i~~~f~~m~~k 390 (425)
T cd02187 319 RVSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPR--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRR 390 (425)
T ss_pred CCCHHHHHHHHHHHHHhCCCcCCCcCCCCEeeeecCCCCC--------CcceeEEEecCCcHHHHHHHHHHHHHHHHHhc
Confidence 9999999999998888888999999999999999988764 23678999999999999999999999999999
Q ss_pred ccceeccccCCCCcchHHHHHHHHHHHHHHHHHh
Q psy14409 402 RAFIHWYVGEGMEEGEFSEAREDLGALEKDYEEM 435 (451)
Q Consensus 402 kAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~ 435 (451)
|||||||+++||||+||.||+++|++++++|+++
T Consensus 391 kAflh~Y~~~G~ee~ef~Ea~~~l~~li~~Y~~~ 424 (425)
T cd02187 391 KAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 424 (425)
T ss_pred CcchhhhhccCCchHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999986
No 10
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=2.5e-105 Score=824.53 Aligned_cols=419 Identities=32% Similarity=0.613 Sum_probs=390.9
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHhcC-CCCCCCCCCCCCCCCCCCCccceeeeCC-----CC--ccccceeEeCCCC
Q psy14409 1 MRECISIHVGQAGVQIGNACWELYCLEHG-IQPDGQMPSDKMIGGGDDSFSTFFSETG-----AG--KHVPRAVFVDLEP 72 (451)
Q Consensus 1 MrEiitiq~Gq~Gn~IG~~~w~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~~~F~e~~-----~~--~~~pR~lliD~e~ 72 (451)
|||||+||+||||||||.+||+++++||+ ++++|.. +++.++||+|.+ ++ +|+|||||||+||
T Consensus 1 m~EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g~~---------~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep 71 (465)
T PTZ00387 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQY---------DDARDSFFENVSENVNRPGKENLKARAVLVDMEE 71 (465)
T ss_pred CCcEEEEEcCchHHHHHHHHHHHHHHHhCccCCCCcc---------cccccceecccccccccCCCccccCcccccCCCc
Confidence 99999999999999999999999999999 6766643 347789999632 23 4999999999999
Q ss_pred ccccccccccccccCCccccccCCccccCccCccccccchhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhH
Q psy14409 73 TVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSL 152 (451)
Q Consensus 73 ~~i~~~~~~~~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~ 152 (451)
++|++++.++++++|++++++.+++|+||||++||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|++
T Consensus 72 ~vi~~i~~~~~~~~f~~~~~i~~~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~ 151 (465)
T PTZ00387 72 GVLNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTR 151 (465)
T ss_pred cHHHHhhcCCcccccCcccccccCCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHH
Confidence 99999999888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCcceeEEEEecCCCCCCccchhhHHHHhhhhhccccceeEEecchhHHhhhhccCCCCC-----------
Q psy14409 153 LMERISVDYGKKSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIER----------- 221 (451)
Q Consensus 153 lle~l~d~y~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~----------- 221 (451)
|+|.|+|+||++.+++++|+|+ ..+++++++||++|+|++|.+++|+++++||++|.++|.+.+++..
T Consensus 152 lle~l~d~y~~~~~~~~~V~P~-~~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~~~~~~~~~~~~~~~~~~~~ 230 (465)
T PTZ00387 152 ILGMLEDEFPHVFRFCPVVFPS-AVDDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKRG 230 (465)
T ss_pred HHHHHHHhcccCceeeeEecCC-CCCcceeccchhHHHHHHHHhhCCeEEEeehHHHHHHHHhhcCcccccccccccccc
Confidence 9999999999999999999998 5688999999999999999999999999999999999988877763
Q ss_pred ----------------CChhhhhHHHHHhhhcCccccccCCCCcccccccccCCccCCccccccccccccCchhhhcccc
Q psy14409 222 ----------------PTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQ 285 (451)
Q Consensus 222 ----------------~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~~~~~L~p~p~~~f~~~s~~pl~~~~~~~~~~ 285 (451)
++|+++|++||++|+++|+++||||.+|.|++++.+||||||++||++++++|+.+.....+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~N~iIa~~l~~~t~~~Rf~g~~n~dl~~i~~nLvP~P~lhFl~~s~~P~~~~~~~~~~~ 310 (465)
T PTZ00387 231 PQPHKYSVAKPTETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAPLVSLKDVAVGP 310 (465)
T ss_pred ccccccccccccccccccHHHHHHHHHhhhccccceeecCCccCCCHHHHHhhcCCCCCceeeccccCcccchhhccccc
Confidence 8899999999999999999999999999999999999999999999999999998876667788
Q ss_pred cCHHHHHHhhcCCCCCccccCCCCCceeeeeccccccCChhhHHHHHHhhhccCccCceecCCCCceeeecCCCCcccCC
Q psy14409 286 LSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPG 365 (451)
Q Consensus 286 ~~~~~l~~~~~~~~n~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~ 365 (451)
.++.+|+.++|++.++|+.++|..++|||+++++||+..+.++.+.+.+++. .+.|++|+|+++++++|.++|..
T Consensus 311 ~s~~~l~~~l~~~~~~m~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~lk~--~~~f~~W~p~~~~~~~~~~~~~~--- 385 (465)
T PTZ00387 311 RRLDQMFKDCLDPDHQMVAATPEAGKYLATALIVRGPQNVSDVTRNILRLKE--QLNMIYWNEDGFKTGLCNVSPLG--- 385 (465)
T ss_pred CCHHHHHHHHhcccCeeeecCCCcchHHHHHHHHcCCCChHHHHHHHHHHhc--cccccccCCCceEEEeeccCCCC---
Confidence 9999999999999999999999999999999999999888999988887764 48899999999999999987752
Q ss_pred CCccchhchhhhccCCchHHHHHHHHHHHHHHHhhcccceeccccCCCCcchHHHHHHHHHHHHHHHHHhccccC
Q psy14409 366 GDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGMEEGEFSEAREDLGALEKDYEEMGEEAG 440 (451)
Q Consensus 366 ~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~~~~rkAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~~~ 440 (451)
.++++++++|+|+|..+|++++++|++||+||||||||+ +|||++||.||+++|++++++|++++..+.
T Consensus 386 -----~~~s~~~lsNst~I~~~f~~i~~~f~~mf~rkAflH~Y~-egmee~eF~ea~~~l~~li~~Y~~~~~~~~ 454 (465)
T PTZ00387 386 -----QPYSLLCLANNCCIRNKFESMLERFNKLYKRKSHVHHYT-EYLEQAYFDETLETIQNLIDDYAYLQTAEP 454 (465)
T ss_pred -----CceeEEEecCChHHHHHHHHHHHHHHHHHhhcchHHhhh-cccchHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 357899999999999999999999999999999999999 799999999999999999999999974443
No 11
>KOG1374|consensus
Probab=100.00 E-value=3.9e-101 Score=737.13 Aligned_cols=430 Identities=34% Similarity=0.625 Sum_probs=399.1
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccceeeeCCCCccccceeEeCCCCcccccccc
Q psy14409 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRT 80 (451)
Q Consensus 1 MrEiitiq~Gq~Gn~IG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~lliD~e~~~i~~~~~ 80 (451)
||||||+|+||||||||.+||+++|+||+|.++|......+ +..++.++||+|..++.|+|||||||+||+||+.+..
T Consensus 2 ~~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l~d~~~--~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~~~ 79 (448)
T KOG1374|consen 2 PREIITLQLGQCGNQIGFEFWKQLCLEHGISPDGILEDFAT--EGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQILS 79 (448)
T ss_pred CceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcccchhh--hCccccccceeeccCCccccceeeeccchHHHhcccc
Confidence 68999999999999999999999999999999998755443 4457899999999999999999999999999999999
Q ss_pred ccccccCCccccccC--CccccCccCccccccchhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhh
Q psy14409 81 GTYRQLFHPEQLISG--KEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERIS 158 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~--~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~ 158 (451)
++++++|+++|++.. ..|+|||||.| |..|+++.|+|+|.|+|++|.||+++||+++||++||||||+||.|+|.|+
T Consensus 80 ~~~s~l~n~eni~~s~~ggGAGNNWA~G-Y~~G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~ 158 (448)
T KOG1374|consen 80 SPYSGLYNPENIFLSDHGGGAGNNWASG-YSQGERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLN 158 (448)
T ss_pred chhhcccCccceEEecCCCCcccccccc-cccchhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHH
Confidence 999999999998765 46899999999 566999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcceeEEEEecCC-CCCCccchhhHHHHhhhhhccccceeEEecchhHHhhhhccCCCCCCChhhhhHHHHHhhhc
Q psy14409 159 VDYGKKSKLQYAIYPAP-QVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSS 237 (451)
Q Consensus 159 d~y~~~~i~~~~v~P~~-~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~ 237 (451)
|+||||.+.+++|||.. ..++++|||||++|+|.+|.+.+|+++++||.||.++|.+.+.+++|+|.++|++||++|++
T Consensus 159 drypkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~i~~ptF~~iNqLvstims~ 238 (448)
T KOG1374|consen 159 DRYPKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLHIQNPTFSQINQLVSTIMSA 238 (448)
T ss_pred HhchhhhheeeeeccCCCCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999984 37899999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCcccccccccCCccCCccccccccccccCchhhhcc--cccCHHHHHHhhcCCCCCccccCC---CCCce
Q psy14409 238 ITASLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYH--EQLSVAEITNACFEPANQMVKCDP---RHGKY 312 (451)
Q Consensus 238 ~t~~~r~~~~~~~~l~~~~~~L~p~p~~~f~~~s~~pl~~~~~~~~--~~~~~~~l~~~~~~~~n~~~~~~~---~~~~~ 312 (451)
.|.++||||+++.++..+...|+|+|++||+++++.|+++...... +..++.+..+.++.++|+|.+..+ .+..+
T Consensus 239 st~t~r~p~Ym~n~l~~l~~~LiP~P~lhfl~~~~tP~~sd~~~~~~~rkttvldvmRrLL~pkn~mvs~~~~~~~~~~~ 318 (448)
T KOG1374|consen 239 STTTLRYPGYMNNDLIGLYASLIPTPELHFLMTGYTPLTSDNSLATAVRKTTVLDVMRRLLQPKNMMVSTADDLSGNPCY 318 (448)
T ss_pred ccccccchhhccCcHHHHHhhcCCCCCeeeeeccCCcccChhhhhhhhhcchHHHHHHHHhCcchhhhhccccccCCcch
Confidence 9999999999999999999999999999999999999998755443 778889999999999999987754 23478
Q ss_pred eeeeccccccCChhhHHHHHHhhhccCccCceecCCCCceeeecCCCCcccCCCCccchhchhhhccCCchHHHHHHHHH
Q psy14409 313 MACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLD 392 (451)
Q Consensus 313 ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~ 392 (451)
++...++-|.+.+..+...+..++......|+.|.|..+.+++....|.+... ++.|+.+|+|+|+|..+|++++
T Consensus 319 ~si~n~iqg~vdp~~v~~s~~r~~dr~~a~f~~w~~~si~val~k~spy~~~~-----~~vSglml~N~t~i~~lfe~~~ 393 (448)
T KOG1374|consen 319 ISILNIIQGEVDPTQVHKSLQRIRDRKLANFIPWGPASIQVALSKKSPYVQRA-----HRVSGLMLANSTSIVSLFERIL 393 (448)
T ss_pred HhHHhhhhcccCHHHHHHHHHHHHhcccccCCCCCCHHHHhhhhcCCCccccc-----cceeeeeeccchhHHHHHHHHH
Confidence 89999999999999999999999988889999999999999998887775443 5678999999999999999999
Q ss_pred HHHHHHhhcccceeccccCCCCcc---hHHHHHHHHHHHHHHHHHhccc
Q psy14409 393 HKFDLMYAKRAFIHWYVGEGMEEG---EFSEAREDLGALEKDYEEMGEE 438 (451)
Q Consensus 393 ~~~~~~~~rkAflH~Y~~~Gmee~---eF~Ea~~~l~~l~~~Y~~~~~~ 438 (451)
.+|+||++||||||+|.++||+++ ||.|+++.+++++++|..++..
T Consensus 394 ~qydklrk~~AFld~y~k~~if~~~~~efdesr~ivq~lv~eY~a~~~~ 442 (448)
T KOG1374|consen 394 GQYDKLRKKRAFLDQYRKFDIFEDDLDEFDESREIVQQLVDEYHAAEQP 442 (448)
T ss_pred HHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhhcCc
Confidence 999999999999999999999988 9999999999999999987543
No 12
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=7.2e-98 Score=755.55 Aligned_cols=379 Identities=36% Similarity=0.710 Sum_probs=361.3
Q ss_pred EeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccceeeeCCCCccccceeEeCCCCccccccccc
Q psy14409 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRTG 81 (451)
Q Consensus 2 rEiitiq~Gq~Gn~IG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~lliD~e~~~i~~~~~~ 81 (451)
||||+||+||||||||.+||+++++|| |+||+|+||+||++|++++.+
T Consensus 1 ~Eii~i~~GqcGnqig~~~w~~~~~eh--------------------------------~~pR~v~iD~e~~~i~~i~~~ 48 (379)
T cd02190 1 REIIVVQVGQCGNQIGCRFWDLALREH--------------------------------LKARAVLIDMEEGVVNEILKG 48 (379)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHHhh--------------------------------cCCcceeccCChhHHHHHhcC
Confidence 799999999999999999999999988 679999999999999999998
Q ss_pred cccccCCccccccCCccccCccCccccccchhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhhhc
Q psy14409 82 TYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDY 161 (451)
Q Consensus 82 ~~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~y 161 (451)
+++++|++++++.+++|+||||++||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|+.|+|.|+|+|
T Consensus 49 ~~~~~~~~~~~~~~~~gaGnn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y 128 (379)
T cd02190 49 PLRDLFDETQLVTDVSGAGNNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEF 128 (379)
T ss_pred ccccccCcccccccCCCCCCCccceeeccchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEecCCCCCCccchhhHHHHhhhhhccccceeEEecchhHHhhhhccCCCCCCChhhhhHHHHHhhhcCccc
Q psy14409 162 GKKSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITAS 241 (451)
Q Consensus 162 ~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~ 241 (451)
|++.+++++|+|+. .+++++++||++|+|++|.+++|+++++||++|. +|+++|++||++|+++|++
T Consensus 129 ~~~~~~~~~v~P~~-~~~~~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~------------~~~~~N~~ia~~i~~~t~~ 195 (379)
T cd02190 129 PEVYRFVTSVYPSA-DDDVITSPYNSVLALRELIEHADCVLPIENQALV------------PFDAMNSIVANLLLNLTSS 195 (379)
T ss_pred CccceEEEeecCCC-CCCceecccHHHHHHHHHHHhCCeeEEeccHHHH------------HHHHHHHHHHhhhcCccce
Confidence 99999999999996 4888999999999999999999999999999998 6999999999999999999
Q ss_pred cccCCCCcccccccccCCccCCccccccccccccCchhhhcccccCHHHHHHhhcCCCCCccccCCCCCceeeeeccccc
Q psy14409 242 LRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRG 321 (451)
Q Consensus 242 ~r~~~~~~~~l~~~~~~L~p~p~~~f~~~s~~pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~ls~~~~~RG 321 (451)
.||||.+|.|++++.++|||||++||++++++|+.+.....++.+++.+|+.+++++.++|+.+++..++|+++++++||
T Consensus 196 ~rf~g~~n~d~~~i~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~kyls~~~i~RG 275 (379)
T cd02190 196 MRFEGSLNVDLNEITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFSRNHQLIRADPKHGLYLACALLVRG 275 (379)
T ss_pred eecccccccchhhhccccccCCCceecccccccccchhhccccCCCHHHHHHHHHccccceeecCCCcchHHHHHHHHcC
Confidence 99999999999999999999999999999999998876666788999999999999999999888889999999999999
Q ss_pred cCChhhHHHHHHhhhccCccCceecCCCCceeeecCCCCcccCCCCccchhchhhhccCCchHHHHHHHHHHHHHHHhhc
Q psy14409 322 DVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAK 401 (451)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~~~~r 401 (451)
+..+.++.+.+.+++.+ ..|++|+|+++++++|.++|.. .++++++++|+|+|..+|++++++|++||+|
T Consensus 276 ~~~~~ei~~~~~~l~~~--~~fv~W~p~~~~~~~~~~~~~~--------~~~s~~~lsNsTsI~~~f~~i~~~f~~mf~k 345 (379)
T cd02190 276 NVSVSDLRRNIERLKPK--LKFVKWNQEGWKIGLCSVPPVG--------HSYSLLCLANNTCIKGTFTELKERFMKLYKR 345 (379)
T ss_pred CCCHHHHHHHHHHHhcc--CcCcCcCCCcEEEeecccCCCC--------cceeEEEecCccHHHHHHHHHHHHHHHHHhc
Confidence 99999998888877665 6799999999999999887642 3568999999999999999999999999999
Q ss_pred ccceeccccCCCCcchHHHHHHHHHHHHHHHHHh
Q psy14409 402 RAFIHWYVGEGMEEGEFSEAREDLGALEKDYEEM 435 (451)
Q Consensus 402 kAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~ 435 (451)
|||||||+++||||+||.||+++|++++++|+++
T Consensus 346 rAflh~Y~~eG~ee~ef~ea~~~l~~li~~Y~~l 379 (379)
T cd02190 346 KAHLHHYTQVGMEQGDFTEALESISNLIDEYDYL 379 (379)
T ss_pred ccchhhhhCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999874
No 13
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=1.7e-97 Score=767.59 Aligned_cols=412 Identities=24% Similarity=0.445 Sum_probs=376.3
Q ss_pred EEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccceeeeCCCCccccceeEeCCCCccccccccccc
Q psy14409 4 CISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTY 83 (451)
Q Consensus 4 iitiq~Gq~Gn~IG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~lliD~e~~~i~~~~~~~~ 83 (451)
|||||+||||||||.+||+++++||+++++|... ...+..++||.|..+++|+||+||||+||++|++++.+..
T Consensus 2 iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~~------~~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~ 75 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYK------YERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSS 75 (446)
T ss_pred eEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCcc------ccccccceeecccCCCCcCCceeecCCCchHHHHhhcCCC
Confidence 8999999999999999999999999998776542 1235778999999999999999999999999999987654
Q ss_pred --cccCCccccccCCccccCccCccccccchhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhhhc
Q psy14409 84 --RQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDY 161 (451)
Q Consensus 84 --~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~y 161 (451)
+++|++++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+|
T Consensus 76 ~~~~~f~~~~~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y 155 (446)
T cd02189 76 GGTWKYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEY 155 (446)
T ss_pred CcccccCchheeecCCCCccchhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhc
Confidence 368999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEecCCCCCCccchhhHHHHhhhhhccccceeEEecchhHHhhhhccCCCCCCChhhhhHHHHHhhhcCccc
Q psy14409 162 GKKSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITAS 241 (451)
Q Consensus 162 ~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~ 241 (451)
|++.+++++|+|+. .+++++|+||++|+|++|.+++|+++++||++|.++|.+.++++.++|.++|++||++|+++|+|
T Consensus 156 ~~~~~~~~~v~P~~-~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~~N~~Ia~~l~~~~~~ 234 (446)
T cd02189 156 PESLLLNIVVWPYT-TGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQP 234 (446)
T ss_pred CccceeeeeccCCC-CCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhH
Confidence 99999999999974 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-C-------CCCcccccccccCCccCCccccccccccccCchhhhcccccCHHHHHHhhc---CCCCCccc------
Q psy14409 242 LRF-D-------GALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACF---EPANQMVK------ 304 (451)
Q Consensus 242 ~r~-~-------~~~~~~l~~~~~~L~p~p~~~f~~~s~~pl~~~~~~~~~~~~~~~l~~~~~---~~~n~~~~------ 304 (451)
.|+ | |.++.+++++.++|||+|++||++++++|+++.....++.+++.+|+..++ .+.+.+..
T Consensus 235 ~r~~~~~~~~~~~~~~~~l~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~l~qm~~~~~~~~~~~~~~~ 314 (446)
T cd02189 235 SLDSTGSNGALAGRSTNPLNDLVEDLCPHPAYKLLTIRSLPQMPEKSLAFSTFSWSALLKRLHQMLIAGSFMEEGIDWTV 314 (446)
T ss_pred hhccCcccccccccccCCHHHHHhhCcCCCCceeeecccCCcccccccccccCCHHHHHHHHHHhhcccccccccccccc
Confidence 986 6 346999999999999999999999999999987767788899999999866 55565544
Q ss_pred -------------cCCCCCceeeeeccccccCChhhHHHHHHhhhccCccCceecCCCCceeeecCCCCcccCCCCccch
Q psy14409 305 -------------CDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKV 371 (451)
Q Consensus 305 -------------~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~ 371 (451)
++++.++||++++++||+....++...+ ++...|++|+|++++++++.++|... +.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~ls~~~i~RG~~~~~~~~~~~-----~~~~~f~~W~p~~~~~~~~~~~~~~~------~~ 383 (446)
T cd02189 315 RPEGSAASLLSGNKSTHFNKSLANLLILRGKDVTSADERKF-----RDPLLYVNWSPSPVRFSISSHKRSFS------KY 383 (446)
T ss_pred ccccccccccccccCCcccceeeeeeeeeCCCchHHHHHHH-----hccCcCCCcCCCCEeeeecCCCCCcC------Cc
Confidence 3466789999999999998777766433 35688999999999999998876421 24
Q ss_pred hchhhhccCCchHHHHHHHHHHHHHHHhhcccceeccccCCCCcchHHHHHHHHHHHHHHHH
Q psy14409 372 QRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGMEEGEFSEAREDLGALEKDYE 433 (451)
Q Consensus 372 ~~s~~~l~Nst~i~~~l~~l~~~~~~~~~rkAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~ 433 (451)
++++++++|+|+|..+|++++++|++||+||||||||+++||||+||.||+++|++++++|+
T Consensus 384 ~~s~~~l~Nst~i~~~l~~i~~~f~~mf~~rAflH~Y~~~Gmee~ef~eA~~~l~~li~~Y~ 445 (446)
T cd02189 384 EKSVTLVSNSQTIIDPLDNILEKAWNMFASGAYLHQYEKYGLEEEDFLDAFATLEQIIASYK 445 (446)
T ss_pred ceeEEEEeCCchHHHHHHHHHHHHHHHHhcCcchhhhhccCCcHHHHHHHHHHHHHHHHHhc
Confidence 67899999999999999999999999999999999999999999999999999999999996
No 14
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=100.00 E-value=1.7e-89 Score=698.69 Aligned_cols=382 Identities=49% Similarity=0.888 Sum_probs=361.4
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccceeeeCCCCccccceeEeCCCCcccccccccc
Q psy14409 3 ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGT 82 (451)
Q Consensus 3 Eiitiq~Gq~Gn~IG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~lliD~e~~~i~~~~~~~ 82 (451)
|||+||+||||||||.+||+++ |+||+||++|+.++.++
T Consensus 1 eii~i~vGq~G~qig~~~w~~~-----------------------------------------i~iD~e~~~i~~i~~~~ 39 (382)
T cd06059 1 EIISIQIGQCGNQIGNKFWELL-----------------------------------------ILVDLDPRVINEILQGQ 39 (382)
T ss_pred CeEEEecCCcHHHHHHHHHHHH-----------------------------------------HcccCCcchhhhhhccc
Confidence 8999999999999999999964 99999999999998888
Q ss_pred ccccCCccccccCCccccCccCccccccchhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhhhcC
Q psy14409 83 YRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYG 162 (451)
Q Consensus 83 ~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~y~ 162 (451)
.+.+|++++++.+++|+||||++||+..|+++.|+++|+||+++|+||.+|||+++||++||||||+|++++|.|+|+||
T Consensus 40 ~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~ 119 (382)
T cd06059 40 LSKLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYP 119 (382)
T ss_pred ccccCCcccEEeccccccccccccccccCHHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEEEEecCCCCCCccchhhHHHHhhhhhccccceeEEecchhHHhhhhccCCCCCCChhhhhHHHHHhhhcCcccc
Q psy14409 163 KKSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 242 (451)
Q Consensus 163 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~ 242 (451)
++.+++++|+|+...+++++++||++|+|.+|.+++|++++++|++|.++|.+.+.+..++|+++|++||++|+++|.++
T Consensus 120 ~~~i~~~~v~P~~~~~~~~v~~yN~~lsl~~L~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~iia~~l~~it~~~ 199 (382)
T cd06059 120 KILINTFSIFPSPQGSSNVVEPYNSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITASL 199 (382)
T ss_pred ccceEeEEEeccCccCCccccchHHHHhHHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCChHHHHHHHHHhhccccccc
Confidence 99999999999966556899999999999999999999999999999999999888889999999999999999999999
Q ss_pred ccCCCCcccccccccCCccCCccccccccccccCchhhhcccccCHHHHHHhhcCCCCCccccCCCCCceeeeecccccc
Q psy14409 243 RFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGD 322 (451)
Q Consensus 243 r~~~~~~~~l~~~~~~L~p~p~~~f~~~s~~pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~ls~~~~~RG~ 322 (451)
|+||.+|.|++++.++|||||++||++++++|+.+.....+..+++.+++.+++++.+++..++++.++++++++++||+
T Consensus 200 r~~g~~n~d~~~i~~~LvP~p~~~fl~~s~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~ 279 (382)
T cd06059 200 RFPGYLNFDLRKLATNLVPFPRLHFLTPSFAPLISYDSQTTEKLNLLQIINELFNNDNSFFSCDPTKGRYLAAALIFRGD 279 (382)
T ss_pred ccCCCcCCCHHHHhhhcCCCCCceeccccccccccchhcccccCCHHHHHHHHhhcccceeecCCCcchHHHHHHHHhCC
Confidence 99999999999999999999999999999999998766677889999999999999999998899999999999999999
Q ss_pred CChhhHHHHHHhhhccCccCceecCCCCceeeecCCCCcccCCCCccchhchhhhccCCchHHHHHHHHHHHHHHHhhcc
Q psy14409 323 VVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKR 402 (451)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~~~~rk 402 (451)
..+.++.+.+.+++.+.... +|+|+++++++|.++|. .+..+++++++|+|+|..+|++++++|++||+||
T Consensus 280 ~~~~~v~~~~~~~~~~~~~~--~w~p~~~~~~~~~~~~~-------~~~~~s~~~l~Nstsi~~~l~~i~~~f~~m~~~r 350 (382)
T cd06059 280 VFQSEIQEAINKLKNKLNIQ--SWIPDGFKVSNCKKPPR-------AELGKSALFLSNSTSIGESLERLIEKFDKLYKRK 350 (382)
T ss_pred CCHHHHHHHHHHHHHhcccc--cCCCCcEEEEecCCCCC-------cCcceeEEEecCchHHHHHHHHHHHHHHHHHhhC
Confidence 99999999888877665443 89999999999998774 1236789999999999999999999999999999
Q ss_pred cceeccccCCCCcchHHHHHHHHHHHHHHHHH
Q psy14409 403 AFIHWYVGEGMEEGEFSEAREDLGALEKDYEE 434 (451)
Q Consensus 403 AflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~ 434 (451)
||||||+++||||+||.||+++|++++++|++
T Consensus 351 Aflh~Y~~~G~ee~ef~ea~~~l~~li~~Y~~ 382 (382)
T cd06059 351 AFLHWYLGEGMDEMEFTEAESSLEDLIQSYQE 382 (382)
T ss_pred cchhhhcCcCCchHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999974
No 15
>KOG1376|consensus
Probab=100.00 E-value=3.4e-87 Score=639.42 Aligned_cols=406 Identities=92% Similarity=1.449 Sum_probs=390.2
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccceeeeCCCCccccceeEeCCCCcccccccc
Q psy14409 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRT 80 (451)
Q Consensus 1 MrEiitiq~Gq~Gn~IG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~lliD~e~~~i~~~~~ 80 (451)
|||||.|++||.|.|||+..|+.+|.||+++++|.++..+......+..+.||.+...++++||+++||+||. |++++.
T Consensus 1 m~e~i~ih~gqag~qi~naCwel~clEhgi~~~g~~p~~~~~~~~~~~~~tff~~t~~~k~~pr~~fVDlEPt-idevrt 79 (407)
T KOG1376|consen 1 MREIISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPDDKSVGKGDDSFNTFFSETGAGKHVPRAVFVDLEPT-IDEVRT 79 (407)
T ss_pred CCcceeeeeccccccccchhHHHHHHHhcCccCCcCCCCccccccCcccceeecccccccccceeEEEeccCc-cchhcc
Confidence 9999999999999999999999999999999999988766555555678899999999999999999999999 999999
Q ss_pred ccccccCCccccccCCccccCccCccccccchhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhhh
Q psy14409 81 GTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVD 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~ 160 (451)
|+|+.+|+|++++.|+++++||+|+|+|+.|+++++..+++||+.++.|..+|||.++||++||||||+++.++|.|..+
T Consensus 80 G~y~~lfHPeqlitGkedAannyArghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~lmerls~~ 159 (407)
T KOG1376|consen 80 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSLLMERLSVD 159 (407)
T ss_pred cchhhccCchhccCcchHhhhhHHhhhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCCCcCCccchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCCCCCccchhhHHHHhhhhhccccceeEEecchhHHhhhhccCCCCCCChhhhhHHHHHhhhcCcc
Q psy14409 161 YGKKSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240 (451)
Q Consensus 161 y~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~ 240 (451)
|+||..+.++++|.+..++.+++|||++|+-....+++|+.+++||++++.+|++++.+++|+|.++|++|+++++++|+
T Consensus 160 ~GKkskl~fsiypapqvSt~vvePynsiltth~tle~sD~sf~vdnea~Ydicr~~l~i~rPtyt~lnr~i~qVvSsita 239 (407)
T KOG1376|consen 160 YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITA 239 (407)
T ss_pred hhhccccccccccCccccccccCCccccccceeecccCcceeecCchhhcchhhhccccCCccccchhhhHHhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcccccccccCCccCCccccccccccccCchhhhcccccCHHHHHHhhcCCCCCccccCCCCCceeeeecccc
Q psy14409 241 SLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYR 320 (451)
Q Consensus 241 ~~r~~~~~~~~l~~~~~~L~p~p~~~f~~~s~~pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~ls~~~~~R 320 (451)
++||.|.+|.||.+|.+||||+| + ++|+.+.....+++.++.+++.++|++.|||.+|+|++++|+++++++|
T Consensus 240 Slrf~g~lnvdl~efqTnlVpyp----l---yap~~s~~~a~he~~sv~~it~~~fe~~~qmvkcDP~~gkyma~cllyr 312 (407)
T KOG1376|consen 240 SLRFDGALNVDLTEFQTNLVPYP----L---YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYR 312 (407)
T ss_pred ccccCCcccccHHHHHhhCCCCc----c---cccchhhcccchhhhhHHhhccccccccccccccCCccchHHHHHHhcc
Confidence 99999999999999999999999 1 8899888888899999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHhhhccCccCceecCCCCceeeecCCCCcccCCCCccchhchhhhccCCchHHHHHHHHHHHHHHHhh
Q psy14409 321 GDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYA 400 (451)
Q Consensus 321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~~~~ 400 (451)
|++.|+++...+..+|.+++++|++ .++++..++++++..|+++|+|+|.+.+.++-.+|+.||.
T Consensus 313 gdvvP~~v~~A~a~ikt~rt~qfvd---------------~~v~gg~lakv~Ravcmlsnttai~eawarld~kfdLmya 377 (407)
T KOG1376|consen 313 GDVVPKDVNAAIATIKTKRTIQFVD---------------TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 377 (407)
T ss_pred CCcCcccchHHHHhhhhccccccce---------------eeccCcchhhhceeeEecCCCcHHHHHHhhcchhhhhhhc
Confidence 9999999999999999999998887 2356788889999999999999999999999999999999
Q ss_pred cccceeccccCCCCcchHHHHHHHHHHHH
Q psy14409 401 KRAFIHWYVGEGMEEGEFSEAREDLGALE 429 (451)
Q Consensus 401 rkAflH~Y~~~Gmee~eF~Ea~~~l~~l~ 429 (451)
||||||||+++||||+||.||++.|..|.
T Consensus 378 krafVhwyvgegmeegef~ea~ed~a~le 406 (407)
T KOG1376|consen 378 KRAFVHWYVGEGMEEGEFSEAREDLAALE 406 (407)
T ss_pred chheeeeccCCCccccchhhhhhhHHhhc
Confidence 99999999999999999999999998764
No 16
>KOG1375|consensus
Probab=100.00 E-value=6.3e-69 Score=516.58 Aligned_cols=345 Identities=40% Similarity=0.805 Sum_probs=326.6
Q ss_pred CCCccceeeeCCCCccccceeEeCCCCccccccccccccccCCccccccCCccccCccCccccccchhHHHHHHHHHHhh
Q psy14409 46 DDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKL 125 (451)
Q Consensus 46 ~~~~~~~F~e~~~~~~~pR~lliD~e~~~i~~~~~~~~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~ 125 (451)
..+++++|.+...++|+||+|+||++|.+++++..++++.+|+|++ +++| .|+|+.|.+..|.
T Consensus 8 ~~~i~~~~~~~~~~~~~~ravlvdlepgs~dsv~~~~~g~~frp~~---~~sg------~ghy~~ga~~~ds-------- 70 (369)
T KOG1375|consen 8 LERINVYYNEAGGGKYVPRAVLVDLEPGSMDSVRSGPFGQIFRPDN---GQSG------KGHYTEGAELVDS-------- 70 (369)
T ss_pred eeeeeeeecccccccccchhheeeccCccccccccCccceeccCcC---CccC------ccceeeeeeehhc--------
Confidence 4588999999988999999999999999999999999999999999 4443 7889999877666
Q ss_pred hhhccCCCceeeEeecCCCccccchhHHHHHhhhhcCCcceeEEEEecCCCCCCccchhhHHHHhhhhhccccceeEEec
Q psy14409 126 ADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMAD 205 (451)
Q Consensus 126 ~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~y~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~ 205 (451)
.||++||||++||++||||||+|++++..++++||.+.+.+++|.|+.. ++++++|||+.|++..|.+++|.++++|
T Consensus 71 --~~dclqgfql~hs~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~k-sd~vvepyna~ls~~ql~en~~et~cid 147 (369)
T KOG1375|consen 71 --SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPK-SDTVVEPYNATLSVHQLVENADETFCID 147 (369)
T ss_pred --ccchhhcceeeeeccCccccCcchhhHHHHHHhccchhcccccccCccc-ccceecccccccchhhhhcCCCcccccc
Confidence 8999999999999999999999999999999999999999999999966 9999999999999999999999999999
Q ss_pred chhHHhhhhccCCCCCCChhhhhHHHHHhhhcCccccccCCCCcccccccccCCccCCccccccccccccCchhhhcccc
Q psy14409 206 NEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQ 285 (451)
Q Consensus 206 N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~~~~~L~p~p~~~f~~~s~~pl~~~~~~~~~~ 285 (451)
|++|+++|.+.+.++.++ ++|..+||||.+|.|++++..|++|+|++||+.++++|++....++++.
T Consensus 148 Neal~dic~~~lkl~~~~-------------g~tt~~rf~g~lnadl~kl~vnmvpfp~lhffm~g~~pl~s~~~~q~~a 214 (369)
T KOG1375|consen 148 NEALYDICFRTLKLKTPS-------------GVTTCLRFPGQLNADLTKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRA 214 (369)
T ss_pred cHHHHHHHhhhhcccCCC-------------CceeecccccccchhhhhhhhccCCCcchhhcccccccccccccccccc
Confidence 999999999999998888 8999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHhhcCCCCCccccCCCCCceeeeeccccccCChhhHHHHHHhhhccCccCceecCCCCceeeecCCCCcccCC
Q psy14409 286 LSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPG 365 (451)
Q Consensus 286 ~~~~~l~~~~~~~~n~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~ 365 (451)
+++++++.++|+.+|+|..++ ||+++.++|| +.+++++++..++.|++..|++|+|+++|.++|..||..
T Consensus 215 ~tv~eltqq~fdaknmm~a~d-----yLt~a~~~rG--smkevDeqm~~vqnk~ss~f~~wiP~~vktavCdipp~g--- 284 (369)
T KOG1375|consen 215 LTVPELTQQMFDAKNMMTACD-----YLTVAAMFRG--SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPGG--- 284 (369)
T ss_pred ccccccccccccCcchhhhhh-----hhhhHHHhcc--chhhhHHHhhhccccCcchhhhhcccccceeeccCCCcc---
Confidence 999999999999999998776 8999999999 889999999999999999999999999999999998863
Q ss_pred CCccchhchhhhccCCchHHHHHHHHHHHHHHHhhcccceeccccCCCCcchHHHHHHHHHHHHHHHHHhccc
Q psy14409 366 GDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGMEEGEFSEAREDLGALEKDYEEMGEE 438 (451)
Q Consensus 366 ~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~~~~rkAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~ 438 (451)
...+.+.++|+|+|...|+.+.++|..||+||||||||+++||+|+||+||..++++++.+|+++..+
T Consensus 285 -----lkms~tf~~n~taiqelf~~i~eqftamfrrkAflhwy~~egMde~EFtEAes~~ndLi~eyqQy~~~ 352 (369)
T KOG1375|consen 285 -----LKMSSTFIGNNTAIQELFRCISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQQD 352 (369)
T ss_pred -----ccccccccccchhHHHHHHHhhhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhh
Confidence 35678999999999999999999999999999999999999999999999999999999999999433
No 17
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=100.00 E-value=3e-64 Score=504.26 Aligned_cols=328 Identities=48% Similarity=0.834 Sum_probs=301.5
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccceeeeCCCCccccceeEeCCCCcccccccccc
Q psy14409 3 ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGT 82 (451)
Q Consensus 3 Eiitiq~Gq~Gn~IG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~lliD~e~~~i~~~~~~~ 82 (451)
||++||+||||||||++||+++ |+||+|+++++.++.++
T Consensus 1 eii~i~iG~~G~~i~~~~~~~~-----------------------------------------v~idtd~~~l~~~~~~~ 39 (328)
T cd00286 1 EIVTIQLGQAGNQIGAKFWEQL-----------------------------------------VLVDTEPGVIDETLSGP 39 (328)
T ss_pred CeEEEecCccHhHHHHHHHHhh-----------------------------------------heecCCHHHHHHHhCcc
Confidence 8999999999999999999842 99999999999998877
Q ss_pred ccccCCccccccCCccccCccCccccccchhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhhhcC
Q psy14409 83 YRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYG 162 (451)
Q Consensus 83 ~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~y~ 162 (451)
.+.+|++.+.+.+++|+||||++||+..|++..|+++|+||+++|+||++|||+++||++||||||+|++++|.|+|+||
T Consensus 40 ~~~~~~~~~~~~~~~gag~n~~~G~~~~~~~~~e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~ 119 (328)
T cd00286 40 YRLLFCIGQLITHGGGAGNNWAFGHETAGEEYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYP 119 (328)
T ss_pred cccccCccceeecCCCCCCCcceeeccccHHHHHHHHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcC
Confidence 77789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEEEEecCCCCCCccchhhHHHHhhhhhccccceeEEecchhHHhhhhccCCCCCCChhhhhHHHHHhhhcCcccc
Q psy14409 163 KKSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 242 (451)
Q Consensus 163 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~ 242 (451)
++.+++++|+|+...+ .++++||++|++++|.+++|+++++||++|.++|.+.+.+..++|+++|++||++|+++|.++
T Consensus 120 ~~~~~~~~v~P~~~~~-~~~~~yNa~l~l~~L~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 198 (328)
T cd00286 120 KRLKITFSILPGPDEG-VIVRPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPL 198 (328)
T ss_pred ccceeEEEecCCCCCc-chhhhhHHHHHHHHHHhcCCeEEEecchhHHHHhHHhcCCCCCCHHHHHHHHHhhcccccccc
Confidence 9999999999985433 699999999999999999999999999999999998888889999999999999999999999
Q ss_pred ccCCCCcccccccccCCccCCccccccccccccCchhhhcccccCHHHHHHhhcCCCCCccccCCCCCceeeeecccccc
Q psy14409 243 RFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGD 322 (451)
Q Consensus 243 r~~~~~~~~l~~~~~~L~p~p~~~f~~~s~~pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~ls~~~~~RG~ 322 (451)
||||.+|.|++++.++|+|+|++||++++++|+.......+...++.+++++++++.+++..++++.++++++++++||.
T Consensus 199 r~~g~~n~d~~~~~~~l~p~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rG~ 278 (328)
T cd00286 199 RFDGSLNVDLRELSENLVPFPRLHFLMVGYAPLDSEGSATPTTLRVAELVRQALRSKNQMVVCDPTHGGYIAALLLVRGP 278 (328)
T ss_pred ccCccccchHHHHhhhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhCCCCeeeccCCCccchHHHHHHHhCC
Confidence 99999999999999999999999999999999987655566788999999999999999988888889999999999999
Q ss_pred CChhhHHHHHHhhhccCccCceecCCCCceeeecCCCCcccCCCCccchhchhhhccCC
Q psy14409 323 VVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNT 381 (451)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Ns 381 (451)
.+.+++.+.+..++.+.+.. +|+|++++++++.++|.. +.+.++++++|+
T Consensus 279 ~~~~~v~~~~~~l~~~~~~~--~w~~~~~~~~~~~~~~~~-------~~~~~~~~l~Ns 328 (328)
T cd00286 279 VSPSEVREGIARVAPRTSHL--SWSPPGIKVGVSPTPPAS-------EHKVSALLLSNS 328 (328)
T ss_pred CChHHHHHHHHHHHHhCCcC--CcCCCCEeEeecCCCCCC-------CcCeEEEEeccC
Confidence 99999988888887765554 899999999998876631 135568888886
No 18
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=100.00 E-value=2.9e-51 Score=386.66 Aligned_cols=215 Identities=45% Similarity=0.846 Sum_probs=201.0
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccceeeeCCCCccccceeEeCCCCcccccccccc
Q psy14409 3 ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGT 82 (451)
Q Consensus 3 Eiitiq~Gq~Gn~IG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~lliD~e~~~i~~~~~~~ 82 (451)
|||+||+||||||||.+||+++++||+++++.. ......+.++||+|...++|+||+|+||+|+++++.++.++
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~~~------~~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~~ 74 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGINPDSK------SQYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRASP 74 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTTSS------SSTTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTSE
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhccccccc------cccccccccceeeeccccccccccccccccccccccccccc
Confidence 899999999999999999999999999987621 11334578999999999999999999999999999998887
Q ss_pred ccccCCccccccCCccccCccCccccccchhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhhhcC
Q psy14409 83 YRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYG 162 (451)
Q Consensus 83 ~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~y~ 162 (451)
.+++|++++++.+++|+||||+.||+..|+++.++++|+||+.+|+||.+++|+++||+|||||||+++.|++.|+++||
T Consensus 75 ~~~l~~~~~~~~~~~g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~ 154 (216)
T PF00091_consen 75 KRSLFDPNNLISGQEGSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYP 154 (216)
T ss_dssp ETTESCGGGEEETSSTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTST
T ss_pred ccccccccccccccccccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhcccc
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEEEEecCCCCCCccchhhHHHHhhhhhccccceeEEecchhHHhhhhccCCCCCCChh
Q psy14409 163 KKSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYT 225 (451)
Q Consensus 163 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~ 225 (451)
++.+++++|+|+ .. +.++++||++++|++|.+++|+++++||++|.++|.+.+++++|+|+
T Consensus 155 ~~~~~~~~ilP~-~~-e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~l~~~~~~f~ 215 (216)
T PF00091_consen 155 KKPIISFSILPF-SS-EGVVEPYNALLSLSELQEYADSVILFDNDALYKICKNQLGIENPAFN 215 (216)
T ss_dssp TSEEEEEEEE-C-GG-GSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHHHTSSHSSHHHH
T ss_pred ccceeecccccc-cc-ccccccceehhHHHHHHHhCCEEEEEcHHHHHHHHhccCCCCCCCcC
Confidence 999999999999 44 89999999999999999999999999999999999999999988876
No 19
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=100.00 E-value=8.3e-49 Score=404.78 Aligned_cols=414 Identities=18% Similarity=0.263 Sum_probs=287.4
Q ss_pred EeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccceeeeCC----CCccccceeEeCCCCccccc
Q psy14409 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETG----AGKHVPRAVFVDLEPTVVDE 77 (451)
Q Consensus 2 rEiitiq~Gq~Gn~IG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~e~~----~~~~~pR~lliD~e~~~i~~ 77 (451)
|||||||+||++|+||+||||++...+...+++. ....+++++||++. ..+|+||+|++|+++..-..
T Consensus 1 rEIiTlq~G~~aN~vgtHfwN~Qe~~~~y~~~~~--------~~~~~~dvl~r~g~~~~g~~tytPR~l~~Dlkg~~gsl 72 (493)
T cd06060 1 REVLTLQLGHYANFVGTHWWNLQEANFGYDPDSP--------ASELDHDVLYREGRTRQGQVTYTPRLLLLDLKGTLGHL 72 (493)
T ss_pred CceEEEeccCccccHhhhhhhhhhhhcCCCCCCc--------cccCCCceeeeccccCCCceeEcCcEEEEecCCccccc
Confidence 7999999999999999999999987776554432 22458899999954 67999999999999887554
Q ss_pred cccccc----------------cccCCccccccC-----CccccCccCccccc---cchhHHHHHHHHHHhhhhhccCCC
Q psy14409 78 VRTGTY----------------RQLFHPEQLISG-----KEDAANNYARGHYT---IGKEIIDLVLDRVRKLADQCTGLQ 133 (451)
Q Consensus 78 ~~~~~~----------------~~~~~~~~~~~~-----~~gsgnnwa~G~~~---~g~~~~~~~~d~ir~~~E~cD~lq 133 (451)
.+.|.+ +-.|+|+++..- ..+.+++|+.|+-. .+.+..|+++|+||+++|+||++|
T Consensus 73 ~~~~~l~~~~l~~~v~~WSDy~r~~yhPrS~~~L~~~~~~~~~~~fd~fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQ 152 (493)
T cd06060 73 PEEGSLKVYNLEASVNVWSDYLYARLHPRSINVINQYNHDGTSQPFEVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQ 152 (493)
T ss_pred ccccCcCCcccccchhhhhhcceeeeCCCceeeccchhcCCCCCCccccccChhhhcchhhHHHHHHHHHHHHHhCcccc
Confidence 433322 224788877543 23555666665422 355788999999999999999999
Q ss_pred ceeeEeecCCCccccchhHHHHHhhhhcCCcceeEEEEecCCCC----CCccchhhHHHHhhhhhccccceeEEecc-hh
Q psy14409 134 GFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQV----STSVVEPYNSVLTTHTTLEHSDCAFMADN-EA 208 (451)
Q Consensus 134 gf~i~~sl~GGtGSGlgs~lle~l~d~y~~~~i~~~~v~P~~~~----~~~~~~~yN~~lsl~~l~e~sd~~i~~~N-~~ 208 (451)
|||+++|++||| ||+|+.++|.|+||||++.++++++.|.... .+.++++||++|++.+|.+++|+++|+.- ..
T Consensus 153 GFqi~~sl~gG~-sG~gs~lLE~L~DEy~k~~i~~~~v~P~~~~~~~~~~~vv~~yNs~LSl~~L~e~sdl~vPl~~~~~ 231 (493)
T cd06060 153 GFQVLCDLHDGF-SGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASSDKNSIRVLNTALGLAQLSEHSSLFVPLSLSGT 231 (493)
T ss_pred cEEEEEecCCcc-cchHHHHHHHHHHhcCccceeEEEeCCCcccccccchhHHHHHHHHHHHHHHHhcCCEEEEEecccc
Confidence 999999999999 8999999999999999999999999996432 25789999999999999999999999984 34
Q ss_pred HHhhhh-----ccCCCCCCChhhhhHHHHHhhhcCccccccCCCCcccccccccCCccCCcccccccccc-ccCchhhhc
Q psy14409 209 IYDICR-----RNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYA-PIVSAEKAY 282 (451)
Q Consensus 209 l~~~~~-----~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~~~~~L~p~p~~~f~~~s~~-pl~~~~~~~ 282 (451)
.|.... ..+.++..+..+.-+++|.+|.++|.++|..+.. .+|.++...|.+..| |+...+.+ |+...
T Consensus 232 ~w~~~~~p~~~~~l~~d~~~~~htSAllA~aldT~TLp~Rl~~~~-~~m~~l~~~l~~~gR-ki~~~~~a~P~p~~---- 305 (493)
T cd06060 232 LWRKPGPPRTFPYLNYDAELPYHTSALLATALDTLTLPYRLKSSP-SSLSGLCDDLSFSGR-KVVAAGLALPFPMV---- 305 (493)
T ss_pred cccCCCCCCCCcccccCCCCchHHHHHHHHHHhhccccceeccCC-ccHHHHHHHhhhccc-hhhhhccCCCCCCC----
Confidence 444322 2234444566678899999999999999998654 568888888887655 66554443 43221
Q ss_pred ccccCHHHHHHhhcCCC--CCccccC-CCCCceeeeeccccccCCh----------------------hhHHHHHHhhhc
Q psy14409 283 HEQLSVAEITNACFEPA--NQMVKCD-PRHGKYMACCMLYRGDVVP----------------------KDVNSAIATIKT 337 (451)
Q Consensus 283 ~~~~~~~~l~~~~~~~~--n~~~~~~-~~~~~~ls~~~~~RG~~~~----------------------~~~~~~~~~~~~ 337 (451)
..-.+.++...+-... .++ .++ ....+++++.++.||.... .++.+.+.+...
T Consensus 306 -~~~~l~d~L~~~~~~~~~~~l-~p~~~~~~~~~~qsv~~rG~~~~~~~~~~~~~~~~~~~~~~c~s~~~~l~~y~~~~~ 383 (493)
T cd06060 306 -GGQDLIDFLDQSDGAVPWLQL-TPGCQIGTRCVIQSVVLRGIPEERLKRRLLAGDQARSPAYACSSVEEMLQLYLQCQY 383 (493)
T ss_pred -CCCcHHHHHHhcCCCCCcccc-CCCCccCceeeeeeehhcCCChhhccccccccccccccchhcCCHHHHHHHHHHhcc
Confidence 1123334433332111 122 221 2246899999999996411 111111111111
Q ss_pred cCccCceecCCCCceeeecCC---CCcccCCC-----Cc---c--chh--chhhhccCCchHHHHHHHHHHHHHHHhhcc
Q psy14409 338 KRTIQFVDWCPTGFKVGINYQ---PPTVVPGG-----DL---A--KVQ--RAVCMLSNTTAIAEAWGRLDHKFDLMYAKR 402 (451)
Q Consensus 338 ~~~~~f~~w~p~~~~~~~~~~---~~~~~~~~-----~~---~--~~~--~s~~~l~Nst~i~~~l~~l~~~~~~~~~rk 402 (451)
+.+.....-.+.++++..-.- .+...... .. . .++ ..++.|.|++++..+|+.++.++.|+-.+|
T Consensus 384 ~~s~~~~~~~~~p~~~~~PfP~if~~~v~~~G~~~~~~~~~~~~~~V~s~p~~a~l~ss~~l~~~l~~l~~~~~kl~~~r 463 (493)
T cd06060 384 PGSMSALSVLPLPLKIRVPFPYIFNPNISADGFVLDNSSRGSAGADVESIPVLAALQSSPSLGEMLESLHRQLSKLDLRR 463 (493)
T ss_pred CCcchhheecCCCCCCCCCCchhhccccCCCccccCCCcccccccceeechhhhhhcCchHHHHHHHHHHHHHHhhhhHh
Confidence 111100011111111110000 00000000 00 0 011 135788999999999999999999999999
Q ss_pred cceeccccCCCCcchHHHHHHHHHHHHHHHHH
Q psy14409 403 AFIHWYVGEGMEEGEFSEAREDLGALEKDYEE 434 (451)
Q Consensus 403 AflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~ 434 (451)
+|.|.+.|+|+|||+|++++|.+++++|++
T Consensus 464 --~~~~~~~g~e~de~~e~le~L~~~~~~Y~~ 493 (493)
T cd06060 464 --KASFFESGLEEDEYKELLEQLLDLAECYED 493 (493)
T ss_pred --hhcccccccCHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999963
No 20
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=100.00 E-value=2.8e-37 Score=286.12 Aligned_cols=185 Identities=42% Similarity=0.653 Sum_probs=171.9
Q ss_pred ceeeeCCCCccccceeEeCCCCccccccccccccccCCccccccCCccccCccCccccc-----cchhHHHHHHHHHHhh
Q psy14409 51 TFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYT-----IGKEIIDLVLDRVRKL 125 (451)
Q Consensus 51 ~~F~e~~~~~~~pR~lliD~e~~~i~~~~~~~~~~~~~~~~~~~~~~gsgnnwa~G~~~-----~g~~~~~~~~d~ir~~ 125 (451)
.||.++ ++.||+|++|+++++++.+..++.++.|++++.+..+.++||||++||+. .|+++.++++|+||++
T Consensus 3 ~~~g~g---~~g~r~v~~d~e~~~i~~i~~~t~~~~l~~~~~~~~k~~~Gn~~~~G~~~~~~~~~g~~~~~~~~~~ir~~ 79 (192)
T smart00864 3 KVFGVG---GYGPNAVLVDLEPGVVDEVRANTDAQALNPESLASGKIGAGNNWTRGLGAGADPEVGREAAEESLDEIREE 79 (192)
T ss_pred EEEEeC---CchhhHHhhhcccCCceEEEECCHHHHhCCcccccchhcccccccccCCCCCChHHHHHHHHHHHHHHHHH
Confidence 466654 78999999999999999988777778899988889999999999999998 8999999999999999
Q ss_pred hhhccCCCceeeEeecCCCccccchhHHHHHhhhhcCCcceeEEEEecCCCCCCccchhhHHHHhhhhhccccceeEEec
Q psy14409 126 ADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMAD 205 (451)
Q Consensus 126 ~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~y~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~ 205 (451)
+|.| ++|+++||++||||||+|+.+++.++ +||+.. ++++|+|+ ..|.++++||++++|++|.+++|.++++|
T Consensus 80 le~~---d~~~i~~slgGGTGsG~~~~i~~~~~-~~~~~~-~~~~v~P~--~~e~~~~~~Na~~~l~~l~~~~d~~i~~d 152 (192)
T smart00864 80 LEGA---DGVFITAGMGGGTGTGAAPVIAEIAK-EYGILT-VAVVTKPF--VFEGVVRPYNAELGLEELREHVDSLIVID 152 (192)
T ss_pred hcCC---CEEEEeccCCCCccccHHHHHHHHHH-HcCCcE-EEEEEEeE--eecchhHHHHHHHHHHHHHHhCCEEEEEE
Confidence 9999 89999999999999999999999999 998876 99999995 47889999999999999999999999999
Q ss_pred chhHHhhhhccCCCCCCChhhhhHHHHHhhhcCccccccCC
Q psy14409 206 NEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDG 246 (451)
Q Consensus 206 N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~~ 246 (451)
|++|.++|.+.+.+ .++|.++|++||++|+++|.++||||
T Consensus 153 N~~l~~~~~~~~~~-~~~~~~~N~~i~~~i~~i~~~~rf~g 192 (192)
T smart00864 153 NDALLDICGRNLPI-RPAFKDANDLLAQAVSGITDLIRFPG 192 (192)
T ss_pred hHHHHHHHhccCCc-hHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999887766 77999999999999999999999986
No 21
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.97 E-value=7.6e-32 Score=270.46 Aligned_cols=222 Identities=20% Similarity=0.278 Sum_probs=189.8
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccceeeeCCCCccccceeEeCCCCcccccccc
Q psy14409 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRT 80 (451)
Q Consensus 1 MrEiitiq~Gq~Gn~IG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~lliD~e~~~i~~~~~ 80 (451)
|| |..|.+|+||+.|-+++++. +. ..+.+|+||+|+||+|+..++.++.
T Consensus 1 m~-i~viGvGg~G~niv~~l~~~-----~~-------------------------~~~~~~~~~~iavntD~~~L~~l~~ 49 (349)
T cd02202 1 MR-VLIIGVGQAGGRIVDALNRH-----DK-------------------------RSGFGYCVGALAINTAKNDLKGLKH 49 (349)
T ss_pred CE-EEEEEeCCcHHHHHHHHHHh-----CC-------------------------CcCCccceeEEEEECCHHHHHhhhc
Confidence 55 88899999999999999762 00 0123688999999999999887743
Q ss_pred ccccccCCccccccCCc-----cccCccCccccccchhHHHHHHHHHHhhhhhccC--CCceeeEeecCCCccccchhHH
Q psy14409 81 GTYRQLFHPEQLISGKE-----DAANNYARGHYTIGKEIIDLVLDRVRKLADQCTG--LQGFLIFHSFGGGTGSGFTSLL 153 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-----gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~--lqgf~i~~sl~GGtGSGlgs~l 153 (451)
.+.++.++.+++ |+|+||. .|+++.++..|.||+.+|.||. +|+|++++|++||||||+++.+
T Consensus 50 -----~~~~~ki~~g~~~t~G~GaG~~~~-----~G~~~aee~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~i 119 (349)
T cd02202 50 -----IPAEDRILIGQSEVKGHGVGADRE-----LGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVL 119 (349)
T ss_pred -----CCCCCEEEecCcccCCCCCCCChH-----HHHHHHHHHHHHHHHHHhccccccccEEEEecccCCCccccHHHHH
Confidence 346677777764 6666664 4689999999999999999997 9999999999999999999999
Q ss_pred HHHhhhhcCCcceeEEEEecCCCCCCccchhhHHHHhhhhhccccceeEEecchhHHhhhhccCCCCCCChhhhhHHHHH
Q psy14409 154 MERISVDYGKKSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQ 233 (451)
Q Consensus 154 le~l~d~y~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~ 233 (451)
++.++++|+ +.+++++++|+. .+..+++||++++|++|.+++|.+++|||++|.+.+.. + .+.|+.+|++||+
T Consensus 120 ae~lke~~~-~~~~~iv~~P~~--~eg~~~~~NA~~~l~~L~~~~D~viv~dNd~L~~~~~~---~-~~~f~~~N~~Ia~ 192 (349)
T cd02202 120 AKELKERYE-EPVYALGVLPAR--EEGERYSANAARSLDALSEEADAIILFDNDAWKRKGES---V-EEAYDRINEEIAR 192 (349)
T ss_pred HHHHHHhCC-ccEEEEEEecCC--CCCchhhHHHHHHHHHHHHhCCEEEEEehHHHhhhccc---h-HHHHHHHHHHHHH
Confidence 999999999 889999999984 35589999999999999999999999999999998742 2 3789999999999
Q ss_pred hhhcCcccccc-----CCCCcccccccccCCccCCcccccccccc
Q psy14409 234 IVSSITASLRF-----DGALNVDLTEFQTNLVPFPRVHFPLVTYA 273 (451)
Q Consensus 234 ~i~~~t~~~r~-----~~~~~~~l~~~~~~L~p~p~~~f~~~s~~ 273 (451)
.|+.++.+.|| ||.+|.|++++.++|.+. .+.+.+++
T Consensus 193 ~i~~l~~~~r~~~~~~~g~invD~~dv~~~L~~~---G~~~iG~g 234 (349)
T cd02202 193 RIGLLLRAGEANAGDSVGESVLDASEVINTLSGG---GFATIGYA 234 (349)
T ss_pred HHHHHHHhhhcccCCCCCeEeccHHHHHHHhccC---CeEEEEEE
Confidence 99999999999 999999999999999765 34445543
No 22
>KOG2530|consensus
Probab=99.97 E-value=4.4e-31 Score=259.78 Aligned_cols=240 Identities=23% Similarity=0.354 Sum_probs=175.6
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccceeeeCC----CCccccceeEeCCCCcccc
Q psy14409 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETG----AGKHVPRAVFVDLEPTVVD 76 (451)
Q Consensus 1 MrEiitiq~Gq~Gn~IG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~e~~----~~~~~pR~lliD~e~~~i~ 76 (451)
||||+|||+|+..|++|+||||++..-.++..+...+.... ...||||+.+. ..+|+||+|++|+....-.
T Consensus 1 mrEilTiq~g~~AnfvgtHfwN~Qea~l~~~~d~~~~~~~~-----~~ndvlyr~g~~~~~~~tytPRl~l~Dl~g~~g~ 75 (483)
T KOG2530|consen 1 MREILTIQVGHFANFVGTHFWNQQEAYLGLATDSEEPPGEL-----CPNDVLYRTGRTDHGQITYTPRLLLVDLKGELGT 75 (483)
T ss_pred CceEEEEEeeccccchhhhhcchhhHhhccCCcccCChhhc-----CcchhhhhccccccCceeeccceeEEecCccccc
Confidence 99999999999999999999999988888776644322211 12289999853 3699999999998866532
Q ss_pred cccccc-------------------------------------------------------------------ccccCCc
Q psy14409 77 EVRTGT-------------------------------------------------------------------YRQLFHP 89 (451)
Q Consensus 77 ~~~~~~-------------------------------------------------------------------~~~~~~~ 89 (451)
....+. .+..|||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~g~~t~~~~~pr~~~~~~qs~~~~~~~l~~~~~~~i~~e~~~~~~~sv~~WsDFlr~~yHp 155 (483)
T KOG2530|consen 76 LKYQGELYNDSHLGNEDAWKGKLTTIKTEPRDRNPELQSLLSAEAELPELNAEEIEYESDYSLLASVPSWSDFLRNHYHP 155 (483)
T ss_pred cccchhhccchhcccccccccccceeccccccCChHHhhhccccCcccccchhhhccccccccccccchHHHHHHhhcCc
Confidence 111000 0122455
Q ss_pred cccccCC-----ccccCccCccccccc-hhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhhhcCC
Q psy14409 90 EQLISGK-----EDAANNYARGHYTIG-KEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGK 163 (451)
Q Consensus 90 ~~~~~~~-----~gsgnnwa~G~~~~g-~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~y~~ 163 (451)
+.+..-+ .++-++|.-|+-..- ..+.+++.|+||+++|+||.+|||+++.++.+|+| |+++.++|.|+|||++
T Consensus 156 ~tl~~l~~~~~d~~a~~~y~iG~d~f~E~s~~eE~~DrLr~~VEECD~lQGFq~l~Did~Gfg-G~as~~le~l~DEys~ 234 (483)
T KOG2530|consen 156 RTLNPLNGLFQDSGAFDRYSIGYDVFTENSYQEEFCDRLRFYVEECDTLQGFQLLSDIDDGFG-GFASKLLEELQDEYSK 234 (483)
T ss_pred cccccCCccccChHHhhccccchhhhhccchhHHHHHHHHHHHHhcccccceEEEEecCCCch-hHHHHHHHHHHHhhcC
Confidence 5443322 223345555542221 23678899999999999999999999999999986 9999999999999999
Q ss_pred cceeEEEEecCC-CCCCc---cch---hhHHHHhhhhhccccceeEEecchhHHhhhhccCCCCCCChhhhhHHHHHhhh
Q psy14409 164 KSKLQYAIYPAP-QVSTS---VVE---PYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVS 236 (451)
Q Consensus 164 ~~i~~~~v~P~~-~~~~~---~~~---~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~ 236 (451)
+.+.+++..|-+ ..++. +-. ..|.++++.+|.+.|++++|+.--.. ++ ......+++|.++.
T Consensus 235 ~~v~tw~~~~~p~s~~~s~k~ls~~~~~lN~als~~qLs~~~~l~~PL~~~~~-------~~----~~~~tsA~~a~~~d 303 (483)
T KOG2530|consen 235 KAVFTWGHNPRPFSQDFSMKRLSNKWLKLNKALSLSQLSQECSLYFPLSTASG-------LG----DLWETSAKLARAFD 303 (483)
T ss_pred CceeccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHhhhcceeeccccccc-------cc----cHHHHHHHHHhhcc
Confidence 999999998842 22222 222 46899999999999999999853221 11 34567789999999
Q ss_pred cCccccccCCCCccccccccc
Q psy14409 237 SITASLRFDGALNVDLTEFQT 257 (451)
Q Consensus 237 ~~t~~~r~~~~~~~~l~~~~~ 257 (451)
++|.|.|..+..+..+.++.+
T Consensus 304 s~tlptr~~ssS~~~~~d~ls 324 (483)
T KOG2530|consen 304 SITLPTRLISSSNLRQRDTLS 324 (483)
T ss_pred cccccceecchhHHHHHHHHH
Confidence 999999998876666655544
No 23
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.95 E-value=6.2e-28 Score=237.74 Aligned_cols=205 Identities=18% Similarity=0.240 Sum_probs=168.3
Q ss_pred EEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccceeeeCCCCccccceeEeCCCCccccccccccc
Q psy14409 4 CISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTY 83 (451)
Q Consensus 4 iitiq~Gq~Gn~IG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~lliD~e~~~i~~~~~~~~ 83 (451)
|..|.+|+||+.+-.++++. ++ . -.+.+.||+|.+.++.+.. +.
T Consensus 3 i~viGvGg~G~n~v~~~~~~-----~~---------------------------~---~~~~iainTd~~~L~~~~a-~~ 46 (303)
T cd02191 3 IAVIGFGGAGGNIVDKFLEY-----DK---------------------------E---GRSAVAVNTDAQDLLGLEA-EN 46 (303)
T ss_pred EEEEEECchHHHHHHHHHHc-----CC---------------------------C---CccEEEEECcHHHHhcCCC-Cc
Confidence 78899999999999998761 00 0 1467999999988876532 11
Q ss_pred cccCCccccccCCccccCccCccccccchhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhhhcCC
Q psy14409 84 RQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGK 163 (451)
Q Consensus 84 ~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~y~~ 163 (451)
+-++.++ .+.-.|+|+||..| ++..++++++||+.+|.||. |++++|+|||||||+++.+++.+++.|+
T Consensus 47 ki~iG~~--~t~g~GaG~~~~~G-----~~~a~e~~~~I~~~le~~D~---v~i~aglGGGTGSG~ap~ia~~~ke~~~- 115 (303)
T cd02191 47 RVLIGQA--RTKGLGAGANPELG-----AEAAEEVQEAIDNIPVHVDM---VFITAGLGGGTGTGGAPVVAEHLKRIGT- 115 (303)
T ss_pred EEecCCc--cccCCCCCCCHHHH-----HHHHHHHHHHHHHHHcCCCE---EEEEeccCCccchhHHHHHHHHHHHhCC-
Confidence 1122111 12346899998764 78999999999999999994 8999999999999999999999999985
Q ss_pred cceeEEEEecCCCCCCccchhhHHHHhhhhhccccceeEEecchhHHhhhhccCCCCCCChhhhhHHHHHhhhcCccccc
Q psy14409 164 KSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLR 243 (451)
Q Consensus 164 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r 243 (451)
..++++++|+ ..|..+++||+.++|++|.+++|.++++||++|.++|.+ +.+. ..|+.+|++|++.++++|..+|
T Consensus 116 -~~~~vvt~Pf--~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~~L~~~~~~-~~~~-~af~~~N~~ia~~i~~it~~i~ 190 (303)
T cd02191 116 -LTVAVVTLPF--SDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIGEK-ASLE-GAFDHADEVLVRAVGGLFGAIE 190 (303)
T ss_pred -CEEEEEeCCc--ccCCccchhhHHHHHHHHHHhCCEEEEEehHHHHHHhhc-CChH-HHHHHHHHHHHHHHHHHHHhhc
Confidence 3444445554 567899999999999999999999999999999999976 7775 4999999999999999999999
Q ss_pred cCCCCcccccccccCCc
Q psy14409 244 FDGALNVDLTEFQTNLV 260 (451)
Q Consensus 244 ~~~~~~~~l~~~~~~L~ 260 (451)
+||.+|.|++++.+.|-
T Consensus 191 ~~g~invD~~dv~~~l~ 207 (303)
T cd02191 191 IEGEINVDFADVKNVMD 207 (303)
T ss_pred cCCcccCCHHHHHHHhc
Confidence 99999999999987663
No 24
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=99.93 E-value=5.1e-26 Score=227.61 Aligned_cols=205 Identities=16% Similarity=0.258 Sum_probs=164.3
Q ss_pred EEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccceeeeCCCCccccceeEeCCCCccccccccccc
Q psy14409 4 CISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTY 83 (451)
Q Consensus 4 iitiq~Gq~Gn~IG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~lliD~e~~~i~~~~~~~~ 83 (451)
|..|.+|+||+.+-+.+++. ++ .-...+.+|+|.+.++.+.. +.
T Consensus 20 i~viGvGg~G~n~v~~l~~~-----~~------------------------------~~~~~iainTD~~~L~~~~a-~~ 63 (349)
T TIGR00065 20 IKVIGVGGGGNNTVNRMLEE-----GV------------------------------EGVEFIAINTDAQHLKTTKA-DK 63 (349)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC------------------------------CceEEEEEECCHHHHhcCCC-Ce
Confidence 78899999999999998762 00 01456889998887765532 11
Q ss_pred cccCCccccccCCccccCccCccccccchhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhhhcCC
Q psy14409 84 RQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGK 163 (451)
Q Consensus 84 ~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~y~~ 163 (451)
+-++.++ .+.-.|+|++|+. |++..++.+|+||+.+|.||.+ +|++|+|||||||+++.+++.++ +|+
T Consensus 64 ki~iG~~--~t~G~GaG~~~~~-----G~~~aee~~d~Ir~~le~~D~v---fI~aglGGGTGSG~apvia~~ak-e~~- 131 (349)
T TIGR00065 64 KILIGKK--LTRGLGAGGNPEI-----GRKAAEESRDEIRKLLEGADMV---FITAGMGGGTGTGAAPVVAKIAK-ELG- 131 (349)
T ss_pred EEEcCCC--CCCCCCCCCCHHH-----HHHHHHHHHHHHHHHHhCCCEE---EEEEeccCccchhHHHHHHHHHH-HcC-
Confidence 1122221 1223578999875 6899999999999999999986 99999999999999886665555 454
Q ss_pred cceeEEEEecCCCCCCccchhhHHHHhhhhhccccceeEEecchhHHhhhhccCCCCCCChhhhhHHHHHhhhcCccccc
Q psy14409 164 KSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLR 243 (451)
Q Consensus 164 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r 243 (451)
+..++++++|+ ..|..+++||+.++|++|.+++|+++++||++|.++|.+ +.+.. .|+.+|.+|++++.++|.++|
T Consensus 132 ~l~vaivt~Pf--~~Eg~~r~~nA~~~l~~L~~~~D~vividNd~L~~~~~~-~~i~~-af~~~N~iia~~i~~it~~ir 207 (349)
T TIGR00065 132 ALTVAVVTKPF--KFEGLKRRKKAEEGLERLKQAVDTLIVIPNDKLLEVVPN-LPLND-AFKVADDVLVRAVKGISELIT 207 (349)
T ss_pred CCEEEEEeCCc--cccchhhHHHHHHHHHHHHHhCCEEEEEeCHHHHHhhcC-CCHHH-HHHHHHHHHHHHHHhHHHhhc
Confidence 44555556665 467899999999999999999999999999999999977 77755 999999999999999999999
Q ss_pred cCCCCcccccccccCCc
Q psy14409 244 FDGALNVDLTEFQTNLV 260 (451)
Q Consensus 244 ~~~~~~~~l~~~~~~L~ 260 (451)
+||.+|.|+.++.+-|-
T Consensus 208 ~~g~iNvDf~dv~~vl~ 224 (349)
T TIGR00065 208 KPGLINIDFADVRAVMS 224 (349)
T ss_pred cCCcCcCCHHHHHHHHh
Confidence 99999999999987663
No 25
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.92 E-value=1.6e-25 Score=221.55 Aligned_cols=208 Identities=15% Similarity=0.234 Sum_probs=168.6
Q ss_pred EEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccceeeeCCCCccccceeEeCCCCccccccccccc
Q psy14409 4 CISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTY 83 (451)
Q Consensus 4 iitiq~Gq~Gn~IG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~lliD~e~~~i~~~~~~~~ 83 (451)
|..|.+|+||+.+-+.+++. ++ . -...+.+|+|.+.++.+.. +.
T Consensus 3 i~viGvGg~G~n~v~~l~~~-----~~---------------------------~---~~~~~a~ntD~~~L~~~~~-~~ 46 (304)
T cd02201 3 IKVIGVGGGGGNAVNRMIES-----GL---------------------------E---GVEFIAANTDAQALAKSKA-PN 46 (304)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC---------------------------C---CceEEEEECCHHHHhcCCC-Cc
Confidence 67899999999999998762 00 0 0456899998888776532 12
Q ss_pred cccCCccccccCCccccCccCccccccchhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhhhcCC
Q psy14409 84 RQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGK 163 (451)
Q Consensus 84 ~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~y~~ 163 (451)
+-++.++ .+.-.|+|++|+.| ++..++.+|+||+.+|.||.+ +|++|+|||||||+++.+++..+ +|+
T Consensus 47 k~~ig~~--~t~g~Gag~~~~~g-----~~~a~~~~~~I~~~l~~~d~v---~i~aglGGGTGSG~ap~ia~~a~-e~g- 114 (304)
T cd02201 47 KIQLGKE--LTRGLGAGGDPEVG-----RKAAEESREEIKEALEGADMV---FITAGMGGGTGTGAAPVIAKIAK-EMG- 114 (304)
T ss_pred EEEcCCC--CCCCCCCCCCHHHH-----HHHHHHHHHHHHHHHhCCCEE---EEeeccCCCcchhHHHHHHHHHH-HcC-
Confidence 2222222 13346889998865 678899999999999999986 99999999999999999776555 565
Q ss_pred cceeEEEEecCCCCCCccchhhHHHHhhhhhccccceeEEecchhHHhhhhccCCCCCCChhhhhHHHHHhhhcCccccc
Q psy14409 164 KSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLR 243 (451)
Q Consensus 164 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r 243 (451)
+..++++++|+ ..|..+++||+.++|++|.+++|.++++||++|.++|.+.+.+.. .|+.+|++|++++.++|.++|
T Consensus 115 ~~~~~vvt~Pf--~~Eg~~~~~nA~~~l~~L~~~~d~~ividN~~L~~~~~~~~~i~~-af~~~n~~ia~~i~~it~~~~ 191 (304)
T cd02201 115 ALTVAVVTKPF--SFEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLEVVDKNLPLLE-AFKLADDVLAQAVKGISDLIT 191 (304)
T ss_pred CCEEEEEeCCc--cccchhHHHHHHHHHHHHHHhCCEEEEEecHHHHHhhccCCCHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 45666666676 467789999999999999999999999999999999987787766 899999999999999999999
Q ss_pred cCCCCcccccccccCCccC
Q psy14409 244 FDGALNVDLTEFQTNLVPF 262 (451)
Q Consensus 244 ~~~~~~~~l~~~~~~L~p~ 262 (451)
+||.+|.|++++.+.|-.-
T Consensus 192 ~~g~invD~~dv~~vl~~~ 210 (304)
T cd02201 192 KPGLINLDFADVKTVMKNK 210 (304)
T ss_pred cCccccCCHHHHHHHhccC
Confidence 9999999999998887543
No 26
>PRK13018 cell division protein FtsZ; Provisional
Probab=99.90 E-value=7.4e-24 Score=212.82 Aligned_cols=205 Identities=18% Similarity=0.297 Sum_probs=166.8
Q ss_pred EEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccceeeeCCCCccccceeEeCCCCccccccccccc
Q psy14409 4 CISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTY 83 (451)
Q Consensus 4 iitiq~Gq~Gn~IG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~lliD~e~~~i~~~~~~~~ 83 (451)
|..|.+|+||+.+-.++++. ++ .+ ...|.||+|.+.+..+... .
T Consensus 31 I~ViGvGGaG~N~v~~m~~~-----~~---------------------------~~---v~~iaiNTD~q~L~~~~a~-~ 74 (378)
T PRK13018 31 IVVVGCGGAGNNTINRLYEI-----GI---------------------------EG---AETIAINTDAQHLAMIKAD-K 74 (378)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC---------------------------CC---ceEEEEECCHHHHhcCCCC-c
Confidence 78899999999999998761 00 00 3458999998877654321 1
Q ss_pred cccCCccccccCCccccCccCccccccchhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhhhcCC
Q psy14409 84 RQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGK 163 (451)
Q Consensus 84 ~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~y~~ 163 (451)
+-++.++ ++.-.|+|++|.. |++..++.+|.||+.+|.||. |+|++|+|||||||+++.+++.+++ ++
T Consensus 75 ki~iG~~--~t~G~GaG~dp~~-----G~~aaee~~d~I~~~le~~D~---vfI~aGLGGGTGSGaapvIa~iake-~g- 142 (378)
T PRK13018 75 KILIGKS--LTRGLGAGGDPEV-----GRKAAEESRDEIKEVLKGADL---VFVTAGMGGGTGTGAAPVVAEIAKE-QG- 142 (378)
T ss_pred EEecCCc--cCCCCCCCCChHH-----HHHHHHHHHHHHHHHhcCCCE---EEEEeeccCcchhhHHHHHHHHHHH-cC-
Confidence 1111111 2233578888665 577888999999999999997 7999999999999999999999987 43
Q ss_pred cceeEEEEecCCCCCCccchhhHHHHhhhhhccccceeEEecchhHHhhhhccCCCCCCChhhhhHHHHHhhhcCccccc
Q psy14409 164 KSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLR 243 (451)
Q Consensus 164 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r 243 (451)
...+++++.|+. .+...+..|+.++|++|.+++|.++++||++|.++| +.+.+.. .|+.+|++|++++.++|.++|
T Consensus 143 ~ltv~vVt~Pf~--~EG~~r~~nA~~gL~~L~e~~D~vividNd~L~~i~-~~~~i~~-af~~~N~iIa~~I~~It~~i~ 218 (378)
T PRK13018 143 ALVVGVVTKPFK--FEGRARMQKAEEGIERLREAADTVIVIDNNRLLDIV-PNLPIAD-AFSVADEVIAETVKGITETIT 218 (378)
T ss_pred CCeEEEEEcCcc--cccHhHHHHHHHHHHHHHHhCCEEEEEecHHHHHHH-hcCCHHH-HHHHHHHHHHHHHHhhhhhcc
Confidence 556788899983 567789999999999999999999999999999999 7777764 899999999999999999999
Q ss_pred cCCCCcccccccccCCc
Q psy14409 244 FDGALNVDLTEFQTNLV 260 (451)
Q Consensus 244 ~~~~~~~~l~~~~~~L~ 260 (451)
+||.+|.|++++.+-|-
T Consensus 219 ~~G~iN~Df~dv~~vl~ 235 (378)
T PRK13018 219 KPSLINLDFADVKSVMK 235 (378)
T ss_pred cCCceecCHHHHHHHhc
Confidence 99999999999987664
No 27
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=99.89 E-value=2e-23 Score=180.29 Aligned_cols=126 Identities=60% Similarity=1.019 Sum_probs=113.0
Q ss_pred CccccccccccccCchhhhcccccCHHHHHHhhcCCCCCccccCCCCCceeeeeccccccCChhhHHHHHHhhhccCccC
Q psy14409 263 PRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQ 342 (451)
Q Consensus 263 p~~~f~~~s~~pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~ 342 (451)
||+||++++++|+........+..++.+|++++|+++|+|+++++++|+|||+++++||+++++++.+.+.+++.+.+++
T Consensus 1 PrlHFl~~s~aP~~~~~~~~~~~~s~~~l~~~lf~~~n~m~~~~~~~gkyla~~~l~RG~v~~~di~~~i~~ik~~~~~~ 80 (126)
T PF03953_consen 1 PRLHFLLSSYAPLTSPEDSNYEKLSVQDLTRQLFDPKNQMVSCDPRQGKYLACALLYRGDVSPKDINEAIAKIKQKNSIQ 80 (126)
T ss_dssp TTT-EEEEEESSTSBTTSTTSSCCTHHHHHHHHTSGGGBSSSS-TTSS-EEEEEEEEEESSTHHHHHHHHHHHHCTSTTS
T ss_pred CCeeeecCccccccccchhhhhcccHhHhhHHHHhhhhhccccccccchhhhhhhccccccccchhhhHHHhhhhccccc
Confidence 89999999999999988888899999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecCCCCceeeecCCCCcccCCCCccchhchhhhccCCchHHHHHHHHHH
Q psy14409 343 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDH 393 (451)
Q Consensus 343 f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~ 393 (451)
|++|+|+++|+++|.++|...+.. +.++++|+|+|+|.++|++|..
T Consensus 81 Fv~W~p~~~kv~~~~~~p~~~~~s-----~~s~~~LsNsTaI~~~f~~i~~ 126 (126)
T PF03953_consen 81 FVDWIPTGFKVGICKVPPYGQPNS-----DRSGLMLSNSTAIAEVFSRISH 126 (126)
T ss_dssp B-SSSTTCEEEEEESS-STSTTTS-----SEEEEEEEEEGGGHHHHHHHHH
T ss_pred eeeecCchhhcccccCCCcccCCC-----cceEEEeCChHHHHHHHHHhcC
Confidence 999999999999999998866543 5679999999999999999863
No 28
>PRK09330 cell division protein FtsZ; Validated
Probab=99.87 E-value=3e-22 Score=201.42 Aligned_cols=207 Identities=17% Similarity=0.262 Sum_probs=164.0
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccceeeeCCCCccccceeEeCCCCcccccccccc
Q psy14409 3 ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGT 82 (451)
Q Consensus 3 Eiitiq~Gq~Gn~IG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~lliD~e~~~i~~~~~~~ 82 (451)
.|..|.+|+||+.+=.++++. ++ + . ...+.+|+|.+.+..+...
T Consensus 15 ~IkViGvGG~G~Nav~~m~~~-----~~-----------------------~---~----v~fia~NTD~q~L~~~~a~- 58 (384)
T PRK09330 15 VIKVIGVGGGGGNAVNRMIEE-----GI-----------------------Q---G----VEFIAANTDAQALLKSKAP- 58 (384)
T ss_pred eEEEEEECCcHHHHHHHHHHc-----CC-----------------------C---C----ceEEEEeCcHHHHhcCCCC-
Confidence 377899999999999998762 00 0 0 2348999988877654321
Q ss_pred ccccCCccccccCCccccCccCccccccchhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhhhcC
Q psy14409 83 YRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYG 162 (451)
Q Consensus 83 ~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~y~ 162 (451)
.+-++.++ ++.-.|+|++|. .|++..++..+.||+.+|.||.+ +|++++|||||||.++ ++..++.+|+
T Consensus 59 ~ki~lG~~--~t~GlGaG~~pe-----~G~~aaee~~e~I~~~l~~~D~v---fI~AGmGGGTGTGaap-vIA~iake~g 127 (384)
T PRK09330 59 VKIQLGEK--LTRGLGAGANPE-----VGRKAAEESREEIREALEGADMV---FITAGMGGGTGTGAAP-VVAEIAKELG 127 (384)
T ss_pred eEEEcCCc--ccccCCCCCCHH-----HHHHHHHHHHHHHHHHHcCCCEE---EEEecCCCcccHHHHH-HHHHHHHHcC
Confidence 11112111 123357888876 46899999999999999999988 9999999999999999 5556666675
Q ss_pred CcceeEEEEecCCCCCCccchhhHHHHhhhhhccccceeEEecchhHHhhhhccCCCCCCChhhhhHHHHHhhhcCcccc
Q psy14409 163 KKSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 242 (451)
Q Consensus 163 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~ 242 (451)
+++++|+|.+...|..+++||+.++|+.|.+++|.+|+++|++|.+++.+.+.+.. .|+.+|.+|++.+.+++..+
T Consensus 128 ---~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~~D~vIvi~Nd~L~~~~~~~~~l~~-Af~~ad~vL~~~v~~It~~i 203 (384)
T PRK09330 128 ---ILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKLLEVVDKKTPLLD-AFKAADDVLRQAVQGITDLI 203 (384)
T ss_pred ---CcEEEEEecCccccchhHHHHHHHHHHHHHHHCCEEEEEecHHHHhhccCCCCHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 44555555444678899999999999999999999999999999999977777765 99999999999999999999
Q ss_pred ccCCCCcccccccccCCc
Q psy14409 243 RFDGALNVDLTEFQTNLV 260 (451)
Q Consensus 243 r~~~~~~~~l~~~~~~L~ 260 (451)
++||.+|.|+.++.+-|-
T Consensus 204 ~~pG~iNvDfaDvk~vm~ 221 (384)
T PRK09330 204 TKPGLINLDFADVKTVMS 221 (384)
T ss_pred hcCCcccCCHHHHHHHHh
Confidence 999999999999877654
No 29
>PF14881 Tubulin_3: Tubulin domain
Probab=99.82 E-value=4.3e-20 Score=168.29 Aligned_cols=132 Identities=20% Similarity=0.358 Sum_probs=101.3
Q ss_pred CccCccccccch-hHHHHHHHH-HHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhhhcCCcce-eEEEEecCCCC
Q psy14409 101 NNYARGHYTIGK-EIIDLVLDR-VRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSK-LQYAIYPAPQV 177 (451)
Q Consensus 101 nnwa~G~~~~g~-~~~~~~~d~-ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~y~~~~i-~~~~v~P~~~~ 177 (451)
.+|..|.-.... +..+++.|+ ||+++|+||.+||||++.++.+|+| |+++.++|+|+||||++.+ +.+++.+....
T Consensus 41 d~f~~G~~~f~~~~~~~d~~D~~lR~f~EECD~lQGfQ~~~d~d~gwg-Gfas~~Le~L~DEy~k~~i~~~~~~~~~~~~ 119 (180)
T PF14881_consen 41 DTFGVGQELFKSLDYEEDFFDRDLRFFLEECDSLQGFQVLTDVDDGWG-GFASSLLEHLRDEYPKKPIIWVWGLRDPSSS 119 (180)
T ss_pred ccccchHHHHhhhhhhhHHHHHHHHHHHHHcccccceEEEecCCCchH-hHHHHHHHHHHHHcCCCceEEeecCCCcccc
Confidence 445555422222 334566665 9999999999999999999999987 9999999999999999986 55555443221
Q ss_pred CC-----ccchhhHHHHhhhhhccccceeEEecchhHHhhhhccCCCCCCChhhhhHHHHHhhhcCcccccc
Q psy14409 178 ST-----SVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRF 244 (451)
Q Consensus 178 ~~-----~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~ 244 (451)
.. ...+.+|.++++..|.++|++++|+.... +..+..+.-.++|.+|.++|.|+|+
T Consensus 120 ~~~~~~~~~~~~~N~a~s~~~L~~~ssl~vPl~~~~-----------d~~s~~htSai~A~aidT~TLp~RL 180 (180)
T PF14881_consen 120 SRDAPRKRRLRLLNKALSLSELSEQSSLFVPLSTLS-----------DASSNWHTSAILAAAIDTITLPYRL 180 (180)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHhhCCEEEecCCCC-----------cCCCcHHHHHHHHHHHHhccccCCC
Confidence 11 12456899999999999999999997310 2345668899999999999999984
No 30
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=99.43 E-value=1.3e-13 Score=116.83 Aligned_cols=66 Identities=23% Similarity=0.387 Sum_probs=49.8
Q ss_pred EeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccceeeeC----CCCccccceeEeCCCCccc
Q psy14409 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSET----GAGKHVPRAVFVDLEPTVV 75 (451)
Q Consensus 2 rEiitiq~Gq~Gn~IG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~e~----~~~~~~pR~lliD~e~~~i 75 (451)
|||||||+|+.+|.||+||||++..-...+++. .....+++++||++ +..+|+||+|++|+....-
T Consensus 1 ~EIiTlq~G~~aN~vgtHfwN~Qe~~~~y~~~~--------~~~~i~~dvlfR~g~~~~g~~TYtPRlL~~Dlkg~lG 70 (115)
T PF10644_consen 1 REIITLQLGHYANFVGTHFWNIQESYLPYDPDE--------KPSEIDHDVLFREGITLSGTVTYTPRLLLFDLKGGLG 70 (115)
T ss_pred CcEEEEEcccccCcHHHhhhhhhhcccccCccc--------cCcccCCceEEecccCcCCCeeECCcEEEEecCCCcC
Confidence 799999999999999999999764433222111 11235889999995 4479999999999977653
No 31
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=99.39 E-value=1.4e-12 Score=128.97 Aligned_cols=146 Identities=15% Similarity=0.194 Sum_probs=125.2
Q ss_pred cccchhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhhhcCCcceeEEEEecCCCCCCccchhhHH
Q psy14409 108 YTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTSVVEPYNS 187 (451)
Q Consensus 108 ~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~y~~~~i~~~~v~P~~~~~~~~~~~yN~ 187 (451)
+..|++..++..+.|++.++..| -++++.++|||||+|.++.+++.+++ .....++++++|+. .|.....-|+
T Consensus 75 P~vG~~aAee~~~~I~~~l~g~d---mvfitaG~GGGTGtGaaPVvakiake--~g~ltvavvt~Pf~--~EG~~r~~~A 147 (338)
T COG0206 75 PEVGRAAAEESIEEIEEALKGAD---MVFVTAGMGGGTGTGAAPVVAEIAKE--LGALTVAVVTLPFS--FEGSPRMENA 147 (338)
T ss_pred cHHHHHHHHHHHHHHHHHhccCC---eEEEEeeecCCccccccHHHHHHHHh--cCCcEEEEEEecch--hcCchHHHHH
Confidence 78899999999999999777655 56889999999999999999999988 36778899999983 4666788899
Q ss_pred HHhhhhhccccceeEEecchhHHhhhhccCCCCCCChhhhhHHHHHhhhcCccccccCCCCcccccccccCCccC
Q psy14409 188 VLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPF 262 (451)
Q Consensus 188 ~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~~~~~L~p~ 262 (451)
..++..|.+++|.+|+++|+.|.+... ...+ ...|...|.++++.+.+++..+.-||.+|.|+.++.+-+-..
T Consensus 148 ~~gi~~L~~~~DtlIvi~Ndkll~~~~-~~~~-~~Af~~ad~vl~~~v~~i~e~I~~~glinvDfaDv~~vm~~~ 220 (338)
T COG0206 148 EEGIEELREVVDTLIVIPNDKLLKGKD-KTPI-AEAFNEADDVLGNAVKGITELITKPGLVNVDFADVRTVMKGG 220 (338)
T ss_pred HHHHHHHHHhCCcEEEEecHHHHhccC-cccH-HHHHHHHHHHHHHHHHHHHHHhccCceEeecHHHHHHHHhcC
Confidence 999999999999999999999998764 3322 236888899999999999999999999999999988776553
No 32
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=98.30 E-value=2.2e-07 Score=78.81 Aligned_cols=114 Identities=27% Similarity=0.419 Sum_probs=84.6
Q ss_pred CcccccccccCCccCCccccccccccccCchhhhcccccCHHHHHH--hhcCCCCCccccCCCCCceeeeeccccccCCh
Q psy14409 248 LNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITN--ACFEPANQMVKCDPRHGKYMACCMLYRGDVVP 325 (451)
Q Consensus 248 ~~~~l~~~~~~L~p~p~~~f~~~s~~pl~~~~~~~~~~~~~~~l~~--~~~~~~n~~~~~~~~~~~~ls~~~~~RG~~~~ 325 (451)
+|.|++++.++|+|+| |++++++|.... .+..+..+++. .++++.+++..+++.. ++++.. +...
T Consensus 1 in~D~~dl~~~L~p~~---~~~~~~~~~~~~----~~~~~a~~~~~~~~l~~~~~~~~a~~~~~--~l~~~~----~~~~ 67 (120)
T smart00865 1 INVDFADVKTVMVPMG---FAMMGIGPASGE----NRALEAAELAISSPLLEPSNIMGAKGVLV--NITGGP----DLTL 67 (120)
T ss_pred CCCchHHHHHhccCCC---eEEEEEEEecCC----ChHHHHHHHHHhCcccCCcchhhcCceEE--EEEcCC----CCCH
Confidence 4789999999999999 889999998752 34456666666 7788877776554432 666655 6778
Q ss_pred hhHHHHHHhhhccCc-cCceecCC-CCceeeecCCCCcccCCCCccchhchhhhccC-CchHHHHHHHHH
Q psy14409 326 KDVNSAIATIKTKRT-IQFVDWCP-TGFKVGINYQPPTVVPGGDLAKVQRAVCMLSN-TTAIAEAWGRLD 392 (451)
Q Consensus 326 ~~~~~~~~~~~~~~~-~~f~~w~p-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N-st~i~~~l~~l~ 392 (451)
.++.+.+..++.+.. ..|+.|.| ..+++. .+.+.++| +|+|...|+++.
T Consensus 68 ~ev~~~~~~i~~~~~~~~~v~w~~~~~~~~~------------------~~~~~i~ni~t~i~~~~~~~~ 119 (120)
T smart00865 68 KEVNEAMERIREKADPDAFIIWGPVIDEELG------------------GDEIRVTVIATGIGSAFKRLS 119 (120)
T ss_pred HHHHHHHHHHHHhcCCCceEEEccccCCcCC------------------CCcEEEEEEecccCccccccC
Confidence 899888888877655 78899988 333211 23578899 999999888753
No 33
>PF13809 Tubulin_2: Tubulin like
Probab=97.28 E-value=0.0029 Score=64.07 Aligned_cols=61 Identities=16% Similarity=0.125 Sum_probs=42.8
Q ss_pred eeeEeecCCCccccchhHHHHHhhhhc-----CCcceeEEEEecCCCCCC---ccchhhHHHHhhhhhc
Q psy14409 135 FLIFHSFGGGTGSGFTSLLMERISVDY-----GKKSKLQYAIYPAPQVST---SVVEPYNSVLTTHTTL 195 (451)
Q Consensus 135 f~i~~sl~GGtGSGlgs~lle~l~d~y-----~~~~i~~~~v~P~~~~~~---~~~~~yN~~lsl~~l~ 195 (451)
++|+.|++||||||+---++-.||+.+ ....+..+.++|....+. .....-|+.-+|..|.
T Consensus 150 V~Vv~SlaGGTGSG~~lDia~~lr~~~~~~~~~~~~i~~~~~lP~~f~~~~~~~~~~~aNayAAL~EL~ 218 (345)
T PF13809_consen 150 VFVVGSLAGGTGSGMFLDIAYLLRDILKQPGQDNPRIYGFFVLPDAFPSIPGGGERVRANAYAALKELD 218 (345)
T ss_pred EEEEEecCCccchhHHHHHHHHHHHHhhcccCCCceEEEEEECCcccccCCcchhhhhhHHHHHHHHHH
Confidence 678899999999999888888888865 445688889999732111 1233456666665554
No 34
>PLN02847 triacylglycerol lipase
Probab=66.09 E-value=14 Score=39.88 Aligned_cols=118 Identities=19% Similarity=0.206 Sum_probs=64.5
Q ss_pred ccceeeeCCCCccccc-eeEeCCCCcccccccccccc--c-c----CCcccc---ccCCccccC----ccCccccccchh
Q psy14409 49 FSTFFSETGAGKHVPR-AVFVDLEPTVVDEVRTGTYR--Q-L----FHPEQL---ISGKEDAAN----NYARGHYTIGKE 113 (451)
Q Consensus 49 ~~~~F~e~~~~~~~pR-~lliD~e~~~i~~~~~~~~~--~-~----~~~~~~---~~~~~gsgn----nwa~G~~~~g~~ 113 (451)
.|+++...+.+.|.|. .|++|=+.+.|=-...|+.. . + +.+..+ .....|..+ .=-+|++...+.
T Consensus 153 eDVL~~~~ks~i~kPaffVavDh~~K~IVVsIRGT~Si~D~LTDL~~~~vPf~~s~l~~gG~~n~~~G~AH~Gml~AArw 232 (633)
T PLN02847 153 EDVLIQKPKAGILKPAFTIIRDENSKCFLLLIRGTHSIKDTLTAATGAVVPFHHSVLHDGGVSNLVLGYAHCGMVAAARW 232 (633)
T ss_pred HHEEEeecccccCCCCeEEEEeCCCCEEEEEECCCCCHHHHHHhcccccccCCcccccccCcccCcCCccCccHHHHHHH
Confidence 4667776677788877 58888777765444444321 0 0 001010 111111111 112344443456
Q ss_pred HHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhh--hcCCcceeEEE
Q psy14409 114 IIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISV--DYGKKSKLQYA 170 (451)
Q Consensus 114 ~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d--~y~~~~i~~~~ 170 (451)
+.+.+...|++.++++...+=+++-||||||+. +.+.-.|+. .+++...++|+
T Consensus 233 I~~~i~~~L~kal~~~PdYkLVITGHSLGGGVA----ALLAilLRe~~~fssi~CyAFg 287 (633)
T PLN02847 233 IAKLSTPCLLKALDEYPDFKIKIVGHSLGGGTA----ALLTYILREQKEFSSTTCVTFA 287 (633)
T ss_pred HHHHHHHHHHHHHHHCCCCeEEEeccChHHHHH----HHHHHHHhcCCCCCCceEEEec
Confidence 667777788888888887776777799988753 334444554 35554444443
No 35
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=57.88 E-value=9.1 Score=32.77 Aligned_cols=42 Identities=17% Similarity=0.420 Sum_probs=29.1
Q ss_pred HHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhhh
Q psy14409 116 DLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVD 160 (451)
Q Consensus 116 ~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~ 160 (451)
+...++|+..+++++. +|.+++.++ |||-.- ....+|.+.++
T Consensus 42 gt~~~~i~~ai~~~~~-dGVlVltDL-Gssp~n-~~~a~e~~~~~ 83 (124)
T PRK14484 42 GTSFDQIQEAIEKNES-DGVLIFFDL-GSAEMN-AEMAIEMLDGE 83 (124)
T ss_pred cchHHHHHHHHHhcCc-CCeEEEEeC-CChHHH-HHHHHHhcCCC
Confidence 3456888888889999 999999999 776533 22234445433
No 36
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=57.77 E-value=9.4 Score=32.76 Aligned_cols=26 Identities=15% Similarity=0.405 Sum_probs=21.3
Q ss_pred CccccchhHHHHHhhhhcCC-cceeEE
Q psy14409 144 GTGSGFTSLLMERISVDYGK-KSKLQY 169 (451)
Q Consensus 144 GtGSGlgs~lle~l~d~y~~-~~i~~~ 169 (451)
|-|.|+|..+++.||.++|+ ..+++.
T Consensus 7 GQGGGiG~~iv~~lr~~~~~~~eI~Al 33 (131)
T PF12953_consen 7 GQGGGIGKQIVEKLRKELPEEVEIIAL 33 (131)
T ss_pred CCCChhHHHHHHHHHHhCCCCcEEEEE
Confidence 45679999999999999998 556554
No 37
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=57.49 E-value=12 Score=31.21 Aligned_cols=34 Identities=21% Similarity=0.409 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhhhhccCCCceeeEeecCCCcccc
Q psy14409 115 IDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSG 148 (451)
Q Consensus 115 ~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG 148 (451)
.+++.+++++.+++.+.-+|++++.++.|||-..
T Consensus 40 ~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp~n 73 (116)
T PF03610_consen 40 IEDFEEKLEEAIEELDEGDGVLILTDLGGGSPFN 73 (116)
T ss_dssp HHHHHHHHHHHHHHCCTTSEEEEEESSTTSHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEeeCCCCccch
Confidence 4566677777777888889999999999997644
No 38
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=53.93 E-value=24 Score=29.67 Aligned_cols=36 Identities=8% Similarity=0.095 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhhhhccCCCceeeEeecCCCccccch
Q psy14409 115 IDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFT 150 (451)
Q Consensus 115 ~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlg 150 (451)
.+++.+++++.+++.+.=+|++|+.++-|||-.-..
T Consensus 41 ~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n~a 76 (116)
T TIGR00824 41 AETLQEKYNAALADLDTEEEVLFLVDIFGGSPYNAA 76 (116)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHH
Confidence 456777777777777767899999999999875443
No 39
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=50.45 E-value=44 Score=30.41 Aligned_cols=109 Identities=13% Similarity=0.194 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhhhcCCcceeEEEEecCCCCCCccchhhHHHHhhhh
Q psy14409 114 IIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTSVVEPYNSVLTTHT 193 (451)
Q Consensus 114 ~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~y~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~ 193 (451)
+...+.+.|+..+|+ .+. -++.+.+-|+- -+++.++-.|+.+||...+ .+++|+...+..--+ ..-.-+..
T Consensus 27 ik~~L~~~i~~lie~--G~~--~fi~GgalG~D-~waae~vl~LK~~yp~ikL--~~v~Pf~~q~~~W~~--~~q~~y~~ 97 (177)
T PF06908_consen 27 IKKALKKQIIELIEE--GVR--WFITGGALGVD-LWAAEVVLELKKEYPEIKL--ALVLPFENQGNNWNE--ANQERYQS 97 (177)
T ss_dssp HHHHHHHHHHHHHTT--T----EEEE---TTHH-HHHHHHHHTTTTT-TT-EE--EEEESSB-TTTTS-H--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CCC--EEEECCcccHH-HHHHHHHHHHHhhhhheEE--EEEEcccchhhcCCH--HHHHHHHH
Confidence 445566667777774 232 22333333322 3466667778999997543 578898543322111 22234566
Q ss_pred hccccceeEEecchhHHhhhhccCCCCCCChhhhhHHHHHhhhcCcc
Q psy14409 194 TLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240 (451)
Q Consensus 194 l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~ 240 (451)
|.+.||.++.+......... .|..-|+.+...-..+.+
T Consensus 98 il~~aD~v~~vs~~~Y~~~~---------~~~~rn~fMvdhsd~~ia 135 (177)
T PF06908_consen 98 ILEQADFVVVVSERPYYSPG---------QLQKRNRFMVDHSDGLIA 135 (177)
T ss_dssp HHHH-SEEEESSSSB---HH---------HHHHHHHHHHHHSSEEEE
T ss_pred HHHhCCEEEEccCCCCCCHH---------HHHHHhHHHHhCCCeEEE
Confidence 66788999888765332111 245567666555444433
No 40
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=48.75 E-value=27 Score=30.39 Aligned_cols=52 Identities=21% Similarity=0.290 Sum_probs=33.5
Q ss_pred cccccchhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhhhc
Q psy14409 106 GHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDY 161 (451)
Q Consensus 106 G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~y 161 (451)
|++.....+...+...+++...++..-+-+++=||+||+ ++..+...++...
T Consensus 2 Gf~~~~~~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~----lA~l~a~~~~~~~ 53 (153)
T cd00741 2 GFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGA----LAGLAGLDLRGRG 53 (153)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHH----HHHHHHHHHHhcc
Confidence 555555667777777777766666666666777899765 4444555565543
No 41
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=42.66 E-value=33 Score=28.90 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhhhhccCCCceeeEeecCCCccccc
Q psy14409 115 IDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGF 149 (451)
Q Consensus 115 ~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGl 149 (451)
.+++.+++++.+++.+.-+|++++.++-|||-.-.
T Consensus 40 ~~~~~~~i~~~i~~~~~~~~viil~Dl~GGSp~n~ 74 (122)
T cd00006 40 PDDLLEKIKAALAELDSGEGVLILTDLFGGSPNNA 74 (122)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCHHHH
Confidence 34566677777777777789999999999976443
No 42
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=40.42 E-value=27 Score=32.65 Aligned_cols=56 Identities=23% Similarity=0.329 Sum_probs=37.6
Q ss_pred ccCccccccchhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhhhc
Q psy14409 102 NYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDY 161 (451)
Q Consensus 102 nwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~y 161 (451)
...+|++..-..+.+.+...++...+++...+=++.-|||||+ +++.+.-.|+..+
T Consensus 98 ~vh~Gf~~~~~~~~~~~~~~~~~~~~~~p~~~i~vtGHSLGGa----iA~l~a~~l~~~~ 153 (229)
T cd00519 98 KVHSGFYSAYKSLYNQVLPELKSALKQYPDYKIIVTGHSLGGA----LASLLALDLRLRG 153 (229)
T ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEccCHHHH----HHHHHHHHHHhhC
Confidence 3456666655667777778888777776666666677899765 5555555666554
No 43
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=39.85 E-value=22 Score=28.74 Aligned_cols=52 Identities=27% Similarity=0.414 Sum_probs=38.5
Q ss_pred ccCCchHHHHHHH-------HHHHHHHHhhcccceeccccCCCC--cchHHHHHHHHHHHHHHHHH
Q psy14409 378 LSNTTAIAEAWGR-------LDHKFDLMYAKRAFIHWYVGEGME--EGEFSEAREDLGALEKDYEE 434 (451)
Q Consensus 378 l~Nst~i~~~l~~-------l~~~~~~~~~rkAflH~Y~~~Gme--e~eF~Ea~~~l~~l~~~Y~~ 434 (451)
++|.++|...|.. |+++..++--+|+|+ ||+. -....||+..|..+.+++..
T Consensus 28 IanDsaVqsLF~~lt~mH~~LL~~i~~~ee~R~~~-----E~lQdkL~qi~eAR~AlDalR~eH~~ 88 (96)
T PF12210_consen 28 IANDSAVQSLFQTLTAMHPQLLKYIQEQEEKRVYY-----EGLQDKLAQIKEARAALDALREEHRE 88 (96)
T ss_dssp GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777665 566777777788655 5663 47799999999999999974
No 44
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=35.13 E-value=27 Score=29.51 Aligned_cols=55 Identities=20% Similarity=0.356 Sum_probs=33.5
Q ss_pred ccccccch-hHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhhhcCC
Q psy14409 105 RGHYTIGK-EIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGK 163 (451)
Q Consensus 105 ~G~~~~g~-~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~y~~ 163 (451)
.|++..-. ...+.+.+.|++.+++.-...=.+.=||+||+ ++..+.-.+....+.
T Consensus 36 ~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGa----lA~l~a~~l~~~~~~ 91 (140)
T PF01764_consen 36 SGFLDAAEDSLYDQILDALKELVEKYPDYSIVITGHSLGGA----LASLAAADLASHGPS 91 (140)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHSTTSEEEEEEETHHHH----HHHHHHHHHHHCTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccCccchhhccchHHH----HHHHHHHhhhhcccc
Confidence 34444334 56677888888877765543333445899764 566666666665544
No 45
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=34.70 E-value=1.2e+02 Score=30.64 Aligned_cols=93 Identities=15% Similarity=0.214 Sum_probs=54.2
Q ss_pred cchhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhhhcCCcceeEEEEecCCCC-CCccchhhHHH
Q psy14409 110 IGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQV-STSVVEPYNSV 188 (451)
Q Consensus 110 ~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~y~~~~i~~~~v~P~~~~-~~~~~~~yN~~ 188 (451)
...+.+.++.+.|+... +..+||+|+|+.. | =--++.+++.+-...++..++|=+..|.... ++.....++++
T Consensus 63 mt~~~w~~la~~I~~~~---~~~dG~VVtHGTD--T-meeTA~~L~~~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av 136 (335)
T PRK09461 63 MTPEDWQHIADDIKANY---DDYDGFVILHGTD--T-MAYTASALSFMLENLGKPVIVTGSQIPLAELRSDGQTNLLNAL 136 (335)
T ss_pred CCHHHHHHHHHHHHHHh---ccCCeEEEeeccc--h-HHHHHHHHHHHHhCCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 34566677778887754 5689999999654 3 1456667776555556666777777887543 34444444554
Q ss_pred HhhhhhccccceeEEecchhHH
Q psy14409 189 LTTHTTLEHSDCAFMADNEAIY 210 (451)
Q Consensus 189 lsl~~l~e~sd~~i~~~N~~l~ 210 (451)
. +..-.... .+.++=|+.++
T Consensus 137 ~-~A~~~~~~-GV~V~f~~~i~ 156 (335)
T PRK09461 137 Y-VAANYPIN-EVTLFFNNKLF 156 (335)
T ss_pred H-HHcCCCCC-eEEEEECCEee
Confidence 3 33211223 34444455555
No 46
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=31.50 E-value=42 Score=28.71 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=22.7
Q ss_pred HHHHHHHHhhhhhccC-CCceeeEeecCCCc
Q psy14409 116 DLVLDRVRKLADQCTG-LQGFLIFHSFGGGT 145 (451)
Q Consensus 116 ~~~~d~ir~~~E~cD~-lqgf~i~~sl~GGt 145 (451)
....++|++.+|+++. =+|++++.++ ||+
T Consensus 42 gt~~~~I~~ai~~~~~~~dgVlvl~DL-Ggs 71 (125)
T TIGR02364 42 GTSPDKIIEAIEKADNEADGVLIFYDL-GSA 71 (125)
T ss_pred cchHHHHHHHHHHhcCCCCCEEEEEcC-CCc
Confidence 3455778888888866 7899999999 764
No 47
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=30.92 E-value=25 Score=34.07 Aligned_cols=34 Identities=26% Similarity=0.487 Sum_probs=24.1
Q ss_pred HHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHh
Q psy14409 116 DLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERI 157 (451)
Q Consensus 116 ~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l 157 (451)
+++++++|+.+++=..+ +++|.|+|+.++..|.=
T Consensus 1 ~eil~~l~~~i~~~~pI--------ig~gaGtGlsAk~ae~g 34 (268)
T PF09370_consen 1 KEILDRLRAQIKAGKPI--------IGAGAGTGLSAKCAEKG 34 (268)
T ss_dssp -HHHHHHHHHHHTT--E--------EEEEESSHHHHHHHHHT
T ss_pred ChHHHHHHHHHhCCCce--------EEEeeccchhhHHHHhc
Confidence 36788888888865555 56788999988877654
No 48
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=30.49 E-value=55 Score=30.88 Aligned_cols=27 Identities=30% Similarity=0.550 Sum_probs=21.7
Q ss_pred eEeecCCCccccchhHHHHHhhhhcCCc
Q psy14409 137 IFHSFGGGTGSGFTSLLMERISVDYGKK 164 (451)
Q Consensus 137 i~~sl~GGtGSGlgs~lle~l~d~y~~~ 164 (451)
++-+++||+|||= +-++..|.+.++..
T Consensus 9 iiIgIaG~SgSGK-TTva~~l~~~~~~~ 35 (218)
T COG0572 9 IIIGIAGGSGSGK-TTVAKELSEQLGVE 35 (218)
T ss_pred EEEEEeCCCCCCH-HHHHHHHHHHhCcC
Confidence 5678999999998 56788888888754
No 49
>COG2893 ManX Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]
Probab=27.99 E-value=74 Score=27.92 Aligned_cols=55 Identities=20% Similarity=0.215 Sum_probs=35.1
Q ss_pred CccCccccccchhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHH
Q psy14409 101 NNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMER 156 (451)
Q Consensus 101 nnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~ 156 (451)
|.++-.++. +....+.+.+.+...++.-|+=+|++|+.++-|||-+-.+++++..
T Consensus 29 nv~~v~~~~-~~~~~~~l~~~~~~~~~~~d~~eevl~ltDl~GGSP~N~A~~l~~~ 83 (143)
T COG2893 29 NVEAVDFVP-GEDSEDLLTKQIAAAIAALDSGEGVLFLTDLFGGSPFNVASRLAME 83 (143)
T ss_pred ceEEEEeec-CCChHHHHHHHHHHHHhhcCCCCcEEEEEecCCCCHhHHHHHHHhh
Confidence 445554332 3233444555555555566777899999999999988776665543
No 50
>PTZ00010 tubulin beta chain; Provisional
Probab=27.77 E-value=28 Score=36.53 Aligned_cols=67 Identities=13% Similarity=0.047 Sum_probs=40.3
Q ss_pred EEEEecCchhhHHHHHHHHHHHHhcCC---CCCCCCCCCCCCCCCCCCccceeeeCCCCccccceeEeCC
Q psy14409 4 CISIHVGQAGVQIGNACWELYCLEHGI---QPDGQMPSDKMIGGGDDSFSTFFSETGAGKHVPRAVFVDL 70 (451)
Q Consensus 4 iitiq~Gq~Gn~IG~~~w~~~~~e~~~---~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~lliD~ 70 (451)
|++--.|++|..+|+.+|+.|..|+.- ..-+.+|.....+..-+..++++....-..+..+.+++|-
T Consensus 135 i~~Sl~GGTGSGlgs~l~e~L~dey~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN 204 (445)
T PTZ00010 135 ITHSLGGGTGSGMGTLLISKLREEYPDRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDN 204 (445)
T ss_pred EEeccCCCccccHHHHHHHHHHhhCCccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeecc
Confidence 566678999999999999999999851 1112222211111112234455554444566777888884
No 51
>PLN02408 phospholipase A1
Probab=27.21 E-value=1.2e+02 Score=31.13 Aligned_cols=64 Identities=16% Similarity=0.319 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHhhhhhccCCC-ceee-EeecCCCccccchhHHHHHhhhhcCCcceeEEEEecCCCCCCc
Q psy14409 113 EIIDLVLDRVRKLADQCTGLQ-GFLI-FHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTS 180 (451)
Q Consensus 113 ~~~~~~~d~ir~~~E~cD~lq-gf~i-~~sl~GGtGSGlgs~lle~l~d~y~~~~i~~~~v~P~~~~~~~ 180 (451)
.+.+++.+.|++.+++...-+ .+.| =||+|| .++...+-.|+..++..+.+++..+-.+..++.
T Consensus 179 s~r~qVl~eI~~ll~~y~~~~~sI~vTGHSLGG----ALAtLaA~dl~~~~~~~~~V~v~tFGsPRVGN~ 244 (365)
T PLN02408 179 SLQEMVREEIARLLQSYGDEPLSLTITGHSLGA----ALATLTAYDIKTTFKRAPMVTVISFGGPRVGNR 244 (365)
T ss_pred hHHHHHHHHHHHHHHhcCCCCceEEEeccchHH----HHHHHHHHHHHHhcCCCCceEEEEcCCCCcccH
Confidence 467788888888888764322 2344 478865 466777777777776554444455544444543
No 52
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=26.45 E-value=50 Score=26.69 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=21.8
Q ss_pred CceeeEeecCCCccccchhHHHHHhhh
Q psy14409 133 QGFLIFHSFGGGTGSGFTSLLMERISV 159 (451)
Q Consensus 133 qgf~i~~sl~GGtGSGlgs~lle~l~d 159 (451)
.+|-|+.+...|+|+.+.+.|++.|..
T Consensus 20 ~~~kivvD~~~G~~~~~~~~ll~~lg~ 46 (104)
T PF02879_consen 20 SGLKIVVDCMNGAGSDILPRLLERLGC 46 (104)
T ss_dssp TTCEEEEE-TTSTTHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 367899999999999988888888765
No 53
>PRK13660 hypothetical protein; Provisional
Probab=26.21 E-value=2.2e+02 Score=26.09 Aligned_cols=104 Identities=14% Similarity=0.174 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhhhcCCcceeEEEEecCCCCC----CccchhhHHHH
Q psy14409 114 IIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVS----TSVVEPYNSVL 189 (451)
Q Consensus 114 ~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~y~~~~i~~~~v~P~~~~~----~~~~~~yN~~l 189 (451)
+...+...|+..+|+ .+.=| +.|.+=|+- =+++.++-.|+.+||...+ .+++|+...+ +.-.+.|
T Consensus 27 IK~aL~~~l~~~~e~--G~~wf--i~ggalG~d-~wAaEvvl~LK~~yp~lkL--~~~~PF~~q~~~W~e~~q~~y---- 95 (182)
T PRK13660 27 IKKAIKRKLIALLEE--GLEWV--IISGQLGVE-LWAAEVVLELKEEYPDLKL--AVITPFEEHGENWNEANQEKL---- 95 (182)
T ss_pred HHHHHHHHHHHHHHC--CCCEE--EECCcchHH-HHHHHHHHHHHhhCCCeEE--EEEeCccchhhcCCHHHHHHH----
Confidence 444555666666663 33322 211111111 2366677789999997644 4578875332 2233334
Q ss_pred hhhhhccccceeEEecchhHHhhhhccCCCCCC-ChhhhhHHHHHhhhcCcc
Q psy14409 190 TTHTTLEHSDCAFMADNEAIYDICRRNLDIERP-TYTNLNRLISQIVSSITA 240 (451)
Q Consensus 190 sl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~-~~~~~N~~ia~~i~~~t~ 240 (451)
..+.+.||.++.+.... .++| .|..-|+.+...-..+.+
T Consensus 96 --~~i~~~aD~v~~vs~~~----------y~~p~q~~~rn~fmv~~sd~~i~ 135 (182)
T PRK13660 96 --ANILKQADFVKSISKRP----------YESPAQFRQYNQFMLEHTDGALL 135 (182)
T ss_pred --HHHHHhCCEEEEecCCC----------CCChHHHHHHHHHHHHccCeEEE
Confidence 45556789988885431 0011 266777777665444443
No 54
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=26.18 E-value=2.4e+02 Score=21.66 Aligned_cols=53 Identities=19% Similarity=0.365 Sum_probs=32.4
Q ss_pred HHHHHHHHhhhhhc--cCCCceeeEeecC----CCccccchhHHHHHhhhhcCCcceeEEEE
Q psy14409 116 DLVLDRVRKLADQC--TGLQGFLIFHSFG----GGTGSGFTSLLMERISVDYGKKSKLQYAI 171 (451)
Q Consensus 116 ~~~~d~ir~~~E~c--D~lqgf~i~~sl~----GGtGSGlgs~lle~l~d~y~~~~i~~~~v 171 (451)
++....++..+++| ...+.+.|+|+-| +|. +-..+.+.|++.+....+..+.-
T Consensus 9 ~eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~---Lk~~V~~~L~~~~~~~~v~~~~~ 67 (83)
T PF01713_consen 9 EEALRALEEFLDEARQRGIRELRIITGKGNHSKGGV---LKRAVRRWLEEGYQYEEVLAYRD 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSH---HHHHHHHHHHHTHCCTTEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCc---HHHHHHHHHHhhhccchhheeee
Confidence 34555555666555 3567788999887 553 77777888876555555555543
No 55
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=26.12 E-value=2.2e+02 Score=28.48 Aligned_cols=92 Identities=15% Similarity=0.173 Sum_probs=52.5
Q ss_pred chhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhhhcCCcceeEEEEecCCCCCCccchhhHHHHh
Q psy14409 111 GKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTSVVEPYNSVLT 190 (451)
Q Consensus 111 g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~y~~~~i~~~~v~P~~~~~~~~~~~yN~~ls 190 (451)
..+.+..+.+.|++..++ .+||+|+|+.. |= --++..+..+-+. ++..++|=+..|....+..-......++.
T Consensus 61 t~~~w~~l~~~I~~~~~~---~dGiVVtHGTD--Tm-eeTA~~L~~~l~~-~kPVVlTGA~rp~~~~~sDg~~NL~~Al~ 133 (323)
T cd00411 61 TDEDWLKIAKDINELYDS---YDGFVITHGTD--TM-EETAYFLSLTLEN-DKPVVLTGSMRPSTELSADGPLNLYNAVY 133 (323)
T ss_pred CHHHHHHHHHHHHHHHHh---cCcEEEEcCcc--cH-HHHHHHHHHHhcC-CCCEEEECCCCCCCCcCcchHHHHHHHHH
Confidence 455666777777776553 88999999554 21 3455566654444 66677777778875433333333333333
Q ss_pred hhhhcc--ccceeEEecchhHH
Q psy14409 191 THTTLE--HSDCAFMADNEAIY 210 (451)
Q Consensus 191 l~~l~e--~sd~~i~~~N~~l~ 210 (451)
+..-.+ .....|+|++. ++
T Consensus 134 ~A~~~~~~~~gV~V~f~~~-i~ 154 (323)
T cd00411 134 VAANYDSRGRGVLVVFNDR-IF 154 (323)
T ss_pred HHcCcccCCCeEEEEECCE-Ee
Confidence 333222 34556666544 54
No 56
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=23.82 E-value=36 Score=16.26 Aligned_cols=8 Identities=63% Similarity=1.493 Sum_probs=5.9
Q ss_pred cCCccCCc
Q psy14409 257 TNLVPFPR 264 (451)
Q Consensus 257 ~~L~p~p~ 264 (451)
+.|+||||
T Consensus 3 sGlI~fpR 10 (11)
T PF08259_consen 3 SGLIPFPR 10 (11)
T ss_pred ccccccCC
Confidence 45788887
No 57
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=23.11 E-value=2.4e+02 Score=27.98 Aligned_cols=93 Identities=16% Similarity=0.165 Sum_probs=49.6
Q ss_pred cchhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhhhcCCcceeEEEEecCCCC-CCccchhhHHH
Q psy14409 110 IGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQV-STSVVEPYNSV 188 (451)
Q Consensus 110 ~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~y~~~~i~~~~v~P~~~~-~~~~~~~yN~~ 188 (451)
...+.+.++.+.|++.++ ..+||+|+|+.. |= -.++.++..+-+..++..+++=+..|.... ++.....++++
T Consensus 54 ~t~~~~~~la~~i~~~~~---~~~GvVVtHGTD--Tm-e~tA~~Ls~~l~~l~kPVVlTGa~~P~~~~~sDg~~NL~~Av 127 (313)
T PF00710_consen 54 MTPEDWLELARAIQAALD---DYDGVVVTHGTD--TM-EETAFFLSLLLDNLDKPVVLTGAMRPLSAPGSDGPRNLYDAV 127 (313)
T ss_dssp --HHHHHHHHHHHHHHHT---TCSEEEEE--ST--TH-HHHHHHHHHHEES-SSEEEEE--SS-TTSTT-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHH---hcCeEEEecCch--HH-HHHHHHHHHHhcCCCCCEEEeCCcCCCcCCCCccHHHHHHHH
Confidence 345666777777877664 399999999654 21 334555655555545666777778887543 45455555665
Q ss_pred HhhhhhccccceeEEecchhHH
Q psy14409 189 LTTHTTLEHSDCAFMADNEAIY 210 (451)
Q Consensus 189 lsl~~l~e~sd~~i~~~N~~l~ 210 (451)
....+-. ..-..++|++. ++
T Consensus 128 ~~A~~~~-~~GV~v~f~~~-i~ 147 (313)
T PF00710_consen 128 RVAASPA-GPGVLVVFNGR-IY 147 (313)
T ss_dssp HHHHSGG-TSSEEEEETTE-EE
T ss_pred HHHhccc-CCceEEEeCCC-cc
Confidence 5444433 44445555444 54
No 58
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=22.70 E-value=42 Score=30.19 Aligned_cols=39 Identities=26% Similarity=0.475 Sum_probs=26.4
Q ss_pred ccCCchHHHHHHHHHHHHHHH--hhcccceeccccCCCCcc
Q psy14409 378 LSNTTAIAEAWGRLDHKFDLM--YAKRAFIHWYVGEGMEEG 416 (451)
Q Consensus 378 l~Nst~i~~~l~~l~~~~~~~--~~rkAflH~Y~~~Gmee~ 416 (451)
+..-..|+..+.+|.+-+.+- |.--.||+||+.|+.||.
T Consensus 91 lehEq~vt~~I~~L~~~a~~~kD~~T~nFLqWfv~EQ~eEe 131 (167)
T COG1528 91 LEHEQKVTSSINELAEVAREEKDYATFNFLQWFVAEQVEEE 131 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence 334445666666666665553 466789999999998654
No 59
>PLN00131 hypothetical protein; Provisional
Probab=21.98 E-value=1.1e+02 Score=27.16 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=21.9
Q ss_pred cccchhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccch
Q psy14409 108 YTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFT 150 (451)
Q Consensus 108 ~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlg 150 (451)
++.|+.+.--+.|-|...+...|.+ --|+||| |||-|
T Consensus 55 ~s~~A~FF~F~sd~iDF~LS~Md~~-----PLSiGG~-GS~~~ 91 (218)
T PLN00131 55 LTWGAPFFIFFAEWIDFLLSSMEGF-----PLSIGGG-GSDAG 91 (218)
T ss_pred ccccchHHHHHHHHHHHHHHHhhcC-----ceeecCC-CCCCC
Confidence 3455555555666666666554543 4577776 77754
No 60
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=20.46 E-value=2.2e+02 Score=28.98 Aligned_cols=101 Identities=13% Similarity=0.240 Sum_probs=70.5
Q ss_pred cccccCCccccCccCccccccc--hhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhhhcCCccee
Q psy14409 90 EQLISGKEDAANNYARGHYTIG--KEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKL 167 (451)
Q Consensus 90 ~~~~~~~~gsgnnwa~G~~~~g--~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~y~~~~i~ 167 (451)
+|=++|+.|+...|. +..| .+..+++...++.+.|.-...-|..+..-.++|.+.|+|.-|+-.+.-++
T Consensus 195 ~nPL~G~~GAs~vFG---PQKGat~~~v~~lD~~l~hfa~~~~~~~g~~v~~~pGaGAAGGmga~L~~~~~a~l------ 265 (378)
T COG1929 195 DNPLCGPQGASAVFG---PQKGATPEMVEELDQALSHFAEVLEQATGKDVIDVPGAGAAGGMGAGLLAFLQAEL------ 265 (378)
T ss_pred CCCCcCCCCceeeec---CccCCCHHHHHHHHHHHHHHHHHHHHHhcchhhcCCCCccchhHHHHHHHHhhCcc------
Confidence 344666666665543 2222 57788888999999988777777777787888888899999887775432
Q ss_pred EEEEecCCCCCCccchhhHHHHhhhhhccccceeEE----ecchhHH
Q psy14409 168 QYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFM----ADNEAIY 210 (451)
Q Consensus 168 ~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~----~~N~~l~ 210 (451)
.|. ++..-.++.|....+-+|++|. +|++.+.
T Consensus 266 ----~~G-------i~iV~~~~~le~~v~daDLVITGEGr~D~Qs~~ 301 (378)
T COG1929 266 ----KSG-------IEIVLEATNLEDAVKDADLVITGEGRIDSQSLH 301 (378)
T ss_pred ----ccc-------HHHHHHHhCHHHhhccCCEEEeCCCcccccccC
Confidence 111 2334445668888899999997 6777655
No 61
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=20.30 E-value=1.2e+02 Score=30.45 Aligned_cols=36 Identities=11% Similarity=0.183 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhhhhccCCCceeeEeecCCCccccch
Q psy14409 115 IDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFT 150 (451)
Q Consensus 115 ~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlg 150 (451)
.+++.+++++.+++.+.-+|++|+.++-|||-.-.+
T Consensus 42 ~~~~~~~l~~~i~~~~~~d~vlILtDl~GGSP~N~a 77 (322)
T PRK15088 42 AETLIEKYNAQLAKLDTSKGVLFLVDTWGGSPFNAA 77 (322)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHH
Confidence 456667777777777777899999999999875543
Done!