RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14409
(451 letters)
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins.
Length = 434
Score = 978 bits (2531), Expect = 0.0
Identities = 394/433 (90%), Positives = 423/433 (97%)
Query: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKH 61
RE ISIH+GQAG+QIGNACWELYCLEHGIQPDGQMPSDK IGGGDD+F+TFFSETG+GKH
Sbjct: 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKH 60
Query: 62 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDR 121
VPRAVF+DLEPTV+DEVRTGTYRQLFHPEQLISGKEDAANN+ARGHYTIGKEIIDLVLDR
Sbjct: 61 VPRAVFIDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDR 120
Query: 122 VRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTSV 181
+RKLAD CTGLQGFLIFHSFGGGTGSGF SLL+ER+SVDYGKKSKL++ +YP+PQVST+V
Sbjct: 121 IRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDYGKKSKLEFTVYPSPQVSTAV 180
Query: 182 VEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITAS 241
VEPYNSVLTTH+ LEHSDC+FM DNEAIYDICRRNLDIERPTYTNLNRLI+Q+VSSITAS
Sbjct: 181 VEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITAS 240
Query: 242 LRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPANQ 301
LRFDGALNVDL EFQTNLVP+PR+HFPLV+YAPI+SAEKAYHEQLSVAEITNACFEPANQ
Sbjct: 241 LRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPANQ 300
Query: 302 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361
MVKCDPRHGKYMACC+LYRGDVVPKDVN+A+ATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 301 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPT 360
Query: 362 VVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGMEEGEFSEA 421
VVPGGDLAKVQRAVCMLSNTTAIAEAW RLDHKFDLMY+KRAF+HWYVGEGMEEGEFSEA
Sbjct: 361 VVPGGDLAKVQRAVCMLSNTTAIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEA 420
Query: 422 REDLGALEKDYEE 434
REDL ALEKDYEE
Sbjct: 421 REDLAALEKDYEE 433
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional.
Length = 448
Score = 951 bits (2461), Expect = 0.0
Identities = 373/448 (83%), Positives = 416/448 (92%)
Query: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGK 60
MRE ISIH+GQAG+Q+GNACWEL+CLEHGIQPDGQMPSDK IG DD+F+TFFSETGAGK
Sbjct: 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGK 60
Query: 61 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120
HVPR VF+DLEPTV+DEVRTGTYRQLFHPEQLISGKEDAANN+ARGHYTIGKEI+DL LD
Sbjct: 61 HVPRCVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 121 RVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTS 180
R+RKLAD CTGLQGFL+FH+ GGGTGSG SLL+ER+SVDYGKKSKL + IYP+PQVST+
Sbjct: 121 RIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180
Query: 181 VVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
VVEPYNSVL+TH+ LEH+D A M DNEAIYDICRRNLDIERPTYTNLNRLI+Q++SS+TA
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTA 240
Query: 241 SLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPAN 300
SLRFDGALNVDLTEFQTNLVP+PR+HF L +YAPI+SAEKAYHEQLSVAEITN+ FEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPAN 300
Query: 301 QMVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
M KCDPRHGKYMACC++YRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFK GINYQPP
Sbjct: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCGINYQPP 360
Query: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGMEEGEFSE 420
TVVPGGDLAKVQRAVCM+SN+TAIAE + R+DHKFDLMYAKRAF+HWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 421 AREDLGALEKDYEEMGEEAGEGGEDAEE 448
AREDL ALEKDYEE+G E+ + + +
Sbjct: 421 AREDLAALEKDYEEVGAESADEEGEEDV 448
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional.
Length = 450
Score = 945 bits (2444), Expect = 0.0
Identities = 375/451 (83%), Positives = 425/451 (94%), Gaps = 2/451 (0%)
Query: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGK 60
MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDK +GGGDD+F+TFFSETGAGK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 61 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120
HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLISGKEDAANN+ARGHYTIGKEI+DL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 121 RVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTS 180
R+RKLAD CTGLQGFL+F++ GGGTGSG SLL+ER+SVDYGKKSKL + +YP+PQVST+
Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTA 180
Query: 181 VVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
VVEPYNSVL+TH+ LEH+D A + DNEAIYDICRR+LDIERPTYTNLNRLISQ++SS+TA
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTA 240
Query: 241 SLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPAN 300
SLRFDGALNVD+TEFQTNLVP+PR+HF L +YAP++SAEKAYHEQLSVAEITN+ FEPA+
Sbjct: 241 SLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPAS 300
Query: 301 QMVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
M KCDPRHGKYMACC++YRGDVVPKDVN+A+ATIKTKRTIQFVDWCPTGFK GINYQPP
Sbjct: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPP 360
Query: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGMEEGEFSE 420
TVVPGGDLAKVQRAVCM+SN+TA+AE + R+DHKFDLMYAKRAF+HWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 421 AREDLGALEKDYEEMGEEAGEGGEDAEEGED 451
AREDL ALEKDYEE+G E+ EG + +EGE+
Sbjct: 421 AREDLAALEKDYEEVGAESAEG--EGDEGEE 449
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton].
Length = 443
Score = 748 bits (1933), Expect = 0.0
Identities = 272/450 (60%), Positives = 339/450 (75%), Gaps = 7/450 (1%)
Query: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGK 60
MRE I++ VGQ G QIGNA WE CLEHGI PDG + GD+ F FF E GK
Sbjct: 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSS--DEGDERFDVFFYEASDGK 58
Query: 61 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120
VPRA+ VDLEP V+D+VR G Y LFHPE +I GKE A NN+ARGHYT+GKEIID V+D
Sbjct: 59 FVPRAILVDLEPGVIDQVRNGPYGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMD 118
Query: 121 RVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTS 180
+R+ AD C GLQGFL+ HS GGGTGSG SLL+ER+ +Y KK KL ++++PAP+VS
Sbjct: 119 MIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYPKKIKLTFSVFPAPKVSDV 178
Query: 181 VVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
VVEPYNSVLT H LE+SDC F+ DNEA+YDICRRNL I+ P+Y +LN+LIS ++SS+T
Sbjct: 179 VVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTT 238
Query: 241 SLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPAN 300
SLRF G LNVDL QTNLVP+PR+HFPLV+Y P S A HE+ SV+E+TN F+P N
Sbjct: 239 SLRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKN 298
Query: 301 QMVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
QMV CDPR G+YMA C+L+RGDV P+DV+ A+ +++KRTIQFV+WCPTGFKV I +PP
Sbjct: 299 QMVSCDPRKGRYMAVCLLFRGDVDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPP 358
Query: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGMEEGEFSE 420
+ + A+V + CMLSNTT+IAEA+ R+D +FDLM+ KRAF+HWYVGEGMEEGEFSE
Sbjct: 359 S-----EPAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLHWYVGEGMEEGEFSE 413
Query: 421 AREDLGALEKDYEEMGEEAGEGGEDAEEGE 450
ARED+ LE++YE +++ E+ EE
Sbjct: 414 AREDVADLEEEYEAAEQDSYLDDEEDEEEM 443
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct
families, the alpha-, beta-, gamma-, delta-, and
epsilon-tubulins and a sixth family (zeta-tubulin) which
is present only in kinetoplastid protozoa. The alpha-
and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins. Also included in
this group is the mitochondrial Misato/DML1 protein
family, involved in mitochondrial fusion and in
mitochondrial distribution and morphology.
Length = 382
Score = 500 bits (1289), Expect = e-177
Identities = 189/432 (43%), Positives = 265/432 (61%), Gaps = 50/432 (11%)
Query: 3 ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHV 62
E ISI +GQ G QIGN WEL
Sbjct: 1 EIISIQIGQCGNQIGNKFWELL-------------------------------------- 22
Query: 63 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRV 122
+ VDL+P V++E+ G +LF P QL++GKE + NN+ARG+YTIG E+ID +LDR+
Sbjct: 23 ---ILVDLDPRVINEILQGQLSKLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEILDRI 79
Query: 123 RKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTSVV 182
RK ++C LQGF I HS GGGTGSG SLL+E +S +Y K ++I+P+PQ S++VV
Sbjct: 80 RKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKILINTFSIFPSPQGSSNVV 139
Query: 183 EPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 242
EPYNS+L+ + LE+SD + DNEA+Y+I R LDI+ P++ +LN +I+QI+SSITASL
Sbjct: 140 EPYNSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITASL 199
Query: 243 RFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPANQM 302
RF G LN DL + TNLVPFPR+HF ++AP++S + E+L++ +I N F N
Sbjct: 200 RFPGYLNFDLRKLATNLVPFPRLHFLTPSFAPLISYDSQTTEKLNLLQIINELFNNDNSF 259
Query: 303 VKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTV 362
CDP G+Y+A +++RGDV ++ AI +K K IQ W P GFKV +PP
Sbjct: 260 FSCDPTKGRYLAAALIFRGDVFQSEIQEAINKLKNKLNIQ--SWIPDGFKVSNCKKPPR- 316
Query: 363 VPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGMEEGEFSEAR 422
A++ ++ LSN+T+I E+ RL KFD +Y ++AF+HWY+GEGM+E EF+EA
Sbjct: 317 ------AELGKSALFLSNSTSIGESLERLIEKFDKLYKRKAFLHWYLGEGMDEMEFTEAE 370
Query: 423 EDLGALEKDYEE 434
L L + Y+E
Sbjct: 371 SSLEDLIQSYQE 382
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins.
Length = 425
Score = 467 bits (1203), Expect = e-163
Identities = 184/437 (42%), Positives = 265/437 (60%), Gaps = 18/437 (4%)
Query: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSF----STFFSETG 57
RE + I GQ G QIG WE+ EHG+ P G G D + +F+E
Sbjct: 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYK------GDSDLQLERINVYFNEAS 54
Query: 58 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDL 117
GK+VPRA+ VDLEP +D VR+G + QLF P+ + G+ A NN+A+GHYT G E+ID
Sbjct: 55 GGKYVPRAILVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDS 114
Query: 118 VLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQV 177
VLD VRK A+ C LQGF + HS GGGTGSG +LL+ +I +Y + ++++P+P+V
Sbjct: 115 VLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMATFSVFPSPKV 174
Query: 178 STSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSS 237
S +VVEPYN+ L+ H +E+SD F DNEA+YDIC R L + PTY +LN L+S ++S
Sbjct: 175 SDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSG 234
Query: 238 ITASLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFE 297
IT LRF G LN DL + N+VPFPR+HF + +AP+ S + L+V E+T F+
Sbjct: 235 ITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFD 294
Query: 298 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINY 357
N M CDPRHG+Y+ ++RG V K+V+ + ++ K + FV+W P K +
Sbjct: 295 AKNMMAACDPRHGRYLTAAAIFRGRVSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCD 354
Query: 358 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGMEEGE 417
PP G ++ + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E E
Sbjct: 355 IPPR---GLKMSAT-----FIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEME 406
Query: 418 FSEAREDLGALEKDYEE 434
F+EA ++ L +Y++
Sbjct: 407 FTEAESNMNDLVSEYQQ 423
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional.
Length = 445
Score = 434 bits (1119), Expect = e-150
Identities = 192/457 (42%), Positives = 276/457 (60%), Gaps = 20/457 (4%)
Query: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGD---DSFSTFFSETG 57
MRE + I GQ G QIG+ WE+ EHGI P G G D + + +++E
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTY-----QGDSDLQLERINVYYNEAT 55
Query: 58 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDL 117
G++VPRAV +DLEP +D VR G Y QLF P+ I G+ A NN+A+GHYT G E+ID
Sbjct: 56 GGRYVPRAVLMDLEPGTMDSVRAGPYGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDS 115
Query: 118 VLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQV 177
VLD VRK A+ C LQGF I HS GGGTGSG +LL+ ++ +Y + + ++++P+P+V
Sbjct: 116 VLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYPDRIMMTFSVFPSPKV 175
Query: 178 STSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSS 237
S +VVEPYN+ L+ H +E++D + DNEA+YDIC R L + PTY +LN L+S ++S
Sbjct: 176 SDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSG 235
Query: 238 ITASLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFE 297
+T LRF G LN DL + NLVPFPR+HF ++ +AP+ S + LSV E+T F+
Sbjct: 236 VTCCLRFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFD 295
Query: 298 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINY 357
N M DPRHG+Y+ L+RG + K+V+ + ++ K + FV+W P K +
Sbjct: 296 AKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCD 355
Query: 358 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGMEEGE 417
PP + +V + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E E
Sbjct: 356 IPPKGLK--------MSVTFIGNSTAIQEMFRRVGEQFTAMFRRKAFLHWYTGEGMDEME 407
Query: 418 FSEAR---EDLGALEKDYEEMG-EEAGEGGEDAEEGE 450
F+EA DL + + Y++ EE GE E+ E E
Sbjct: 408 FTEAESNMNDLVSEYQQYQDATVEEEGEFDEEEEAYE 444
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional.
Length = 447
Score = 425 bits (1093), Expect = e-146
Identities = 183/456 (40%), Positives = 275/456 (60%), Gaps = 15/456 (3%)
Query: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGK 60
MRE + I GQ G QIG WE+ C EHGI P G D + + + +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQ--LERINVYYNEASGGR 58
Query: 61 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120
+VPRAV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G E+ID VLD
Sbjct: 59 YVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 118
Query: 121 RVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTS 180
VRK A+ C LQGF + HS GGGTGSG +LL+ +I +Y + L ++++P+P+VS +
Sbjct: 119 VVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDT 178
Query: 181 VVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
VVEPYN+ L+ H +E++D + DNEA+YDIC R L + P++ +LN LIS +S +T
Sbjct: 179 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238
Query: 241 SLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPAN 300
LRF G LN DL + NL+PFPR+HF +V +AP+ S + L+V E+T ++ N
Sbjct: 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKN 298
Query: 301 QMVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
M DPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 299 MMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP 358
Query: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGMEEGEFSE 420
++ A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+E
Sbjct: 359 K--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTE 410
Query: 421 AREDLGALEKDYEE-----MGEEAGEGGEDAEEGED 451
A ++ L +Y++ EE E+ EE +
Sbjct: 411 AESNMNDLVSEYQQYQDATADEEGEYEDEEEEEEYE 446
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin
alpha-, beta-, gamma-, delta-, and epsilon-tubulins as
well as FtsZ, all of which are involved in polymer
formation. Tubulin is the major component of
microtubules, but also exists as a heterodimer and as a
curved oligomer. Microtubules exist in all eukaryotic
cells and are responsible for many functions, including
cellular transport, cell motility, and mitosis. FtsZ
forms a ring-shaped septum at the site of bacterial cell
division, which is required for constriction of cell
membrane and cell envelope to yield two daughter cells.
FtsZ can polymerize into tubes, sheets, and rings in
vitro and is ubiquitous in eubacteria, archaea, and
chloroplasts.
Length = 328
Score = 412 bits (1061), Expect = e-143
Identities = 156/379 (41%), Positives = 208/379 (54%), Gaps = 51/379 (13%)
Query: 3 ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHV 62
E ++I +GQAG QIG WE
Sbjct: 1 EIVTIQLGQAGNQIGAKFWEQL-------------------------------------- 22
Query: 63 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRV 122
V VD EP V+DE +G YR LF QLI+ A NN+A GH T G+E + +LD +
Sbjct: 23 ---VLVDTEPGVIDETLSGPYRLLFCIGQLITHGGGAGNNWAFGHETAGEEYQEEILDII 79
Query: 123 RKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTSVV 182
RK A++C LQGF I HS GGGTGSG +L ER+ +Y K+ K+ ++I P P +V
Sbjct: 80 RKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKRLKITFSILPGPDEGV-IV 138
Query: 183 EPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 242
PYNS+LT HT EHSDC + DNEA++DIC R L I++PT+ ++N L++ +SS+T L
Sbjct: 139 RPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPL 198
Query: 243 RFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPANQM 302
RFDG+LNVDL E NLVPFPR+HF +V YAP+ S A L VAE+ NQM
Sbjct: 199 RFDGSLNVDLRELSENLVPFPRLHFLMVGYAPLDSEGSATPTTLRVAELVRQALRSKNQM 258
Query: 303 VKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTV 362
V CDP HG Y+A +L RG V P +V IA + + + W P G KVG++ PP
Sbjct: 259 VVCDPTHGGYIAALLLVRGPVSPSEVREGIARVAPRT--SHLSWSPPGIKVGVSPTPPAS 316
Query: 363 VPGGDLAKVQRAVCMLSNT 381
+ + + +LSN+
Sbjct: 317 -------EHKVSALLLSNS 328
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous
phylogenetically conserved member of tubulin
superfamily. Gamma is a low abundance protein present
within the cells in both various types of
microtubule-organizing centers and cytoplasmic protein
complexes. Gamma-tubulin recruits the
alpha/beta-tubulin dimers that form the minus ends of
microtubules and is thought to be involved in
microtubule nucleation and capping.
Length = 431
Score = 325 bits (836), Expect = e-108
Identities = 154/441 (34%), Positives = 246/441 (55%), Gaps = 20/441 (4%)
Query: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKH 61
RE I++ VGQ G QIG+ W+ C EHGI PDG D GGD FF + +
Sbjct: 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGI-LEDFATDGGDRK-DVFFYQADDEHY 58
Query: 62 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKED--AANNYARGHYTIGKEIIDLVL 119
VPRA+ +DLEP V++ ++ YR L++PE + K A NN+A G Y+ G+E+ + +L
Sbjct: 59 VPRAILIDLEPRVINSIQNSEYRNLYNPENIFLSKHGGGAGNNWASG-YSQGEEVQEEIL 117
Query: 120 DRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVST 179
D + + AD L+GF++ HS GGTGSG S L+ER++ Y KK Y+++P S+
Sbjct: 118 DIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRYPKKLIQTYSVFPNQDESS 177
Query: 180 SV-VEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSI 238
V V+PYNS+LT + ++DC + DN A+ I L I+ PT+ +N L+S ++S+
Sbjct: 178 DVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSAS 237
Query: 239 TASLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKA-YHEQLSVAEITNACFE 297
T +LR+ G +N DL +L+P PR+HF + +Y P+ S + A + +V ++ +
Sbjct: 238 TTTLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQ 297
Query: 298 PANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGIN 356
P N MV ++G Y++ + +G+V P V+ ++ I+ +R F+ W P +V ++
Sbjct: 298 PKNIMVSTATRKNGCYISILNIIQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQVALS 357
Query: 357 YQPPTVVPGGDLAKVQRAVC--MLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGME 414
+ P V V ML+N T+IA + R+ +FD + +RAF+ Y E M
Sbjct: 358 KKSPYV-------PTAHRVSGLMLANHTSIASLFERILKQFDKLRKRRAFLDNYRKEDMF 410
Query: 415 EG---EFSEAREDLGALEKDY 432
EF E+RE + +L ++Y
Sbjct: 411 SDNLDEFDESREVVQSLIEEY 431
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
epsilon-tubulins which are widespread but not ubiquitous
among eukaryotes play a role in basal body/centriole
morphogenesis.
Length = 379
Score = 307 bits (789), Expect = e-101
Identities = 140/436 (32%), Positives = 228/436 (52%), Gaps = 59/436 (13%)
Query: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKH 61
RE I + VGQ G QIG W+L EH A
Sbjct: 1 REIIVVQVGQCGNQIGCRFWDLALREH---------------------------LKA--- 30
Query: 62 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDR 121
RAV +D+E VV+E+ G R LF QL++ A NN+A G++ G + ID +L++
Sbjct: 31 --RAVLIDMEEGVVNEILKGPLRDLFDETQLVTDVSGAGNNWAVGYHQYGHQYIDSILEK 88
Query: 122 VRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPA--PQVST 179
+RK A++C LQ F I HS GGGTGSG + ++E ++ ++ + + ++YP+ V T
Sbjct: 89 IRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVYRFVTSVYPSADDDVIT 148
Query: 180 SVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSIT 239
S PYNSVL +EH+DC +N+A+ + +N +++ ++ ++T
Sbjct: 149 S---PYNSVLALRELIEHADCVLPIENQALVP------------FDAMNSIVANLLLNLT 193
Query: 240 ASLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPA 299
+S+RF+G+LNVDL E NLVPFPR+HF + + +P+ + ++ + F
Sbjct: 194 SSMRFEGSLNVDLNEITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFSRN 253
Query: 300 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQP 359
+Q+++ DP+HG Y+AC +L RG+V D+ I +K K ++FV W G+K+G+ P
Sbjct: 254 HQLIRADPKHGLYLACALLVRGNVSVSDLRRNIERLKPK--LKFVKWNQEGWKIGLCSVP 311
Query: 360 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGMEEGEFS 419
P ++ L+N T I + L +F +Y ++A +H Y GME+G+F+
Sbjct: 312 P--------VGHSYSLLCLANNTCIKGTFTELKERFMKLYKRKAHLHHYTQVGMEQGDFT 363
Query: 420 EAREDLGALEKDYEEM 435
EA E + L +Y+ +
Sbjct: 364 EALESISNLIDEYDYL 379
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional.
Length = 465
Score = 300 bits (771), Expect = 1e-97
Identities = 135/470 (28%), Positives = 223/470 (47%), Gaps = 56/470 (11%)
Query: 1 MRECISIHVGQAGVQIGNACWELYCLEH-GIQPDGQMPSDKMIGGGDDSFSTFFSETGAG 59
RE +++ VGQ G Q+G+ W++ EH I + Q DD+ +FF
Sbjct: 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQY---------DDARDSFFENVSEN 51
Query: 60 KHVP-------RAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGK 112
+ P RAV VD+E V++++ LF +S A NN+A GH G
Sbjct: 52 VNRPGKENLKARAVLVDMEEGVLNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGD 111
Query: 113 EIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIY 172
+ ID + + VR+ +QC LQ F + HS GGGTGSG + ++ + ++ + ++
Sbjct: 112 KYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRILGMLEDEFPHVFRFCPVVF 171
Query: 173 PAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIER----------- 221
P+ V + PYNS +EH+DC DN+A+ +I L ++
Sbjct: 172 PS-AVDDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKRG 230
Query: 222 ----------PT------YTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPFPRV 265
PT Y +N +++Q++S++T+S+RF+G+LNVD+ E TNLVP+PR+
Sbjct: 231 PQPHKYSVAKPTETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRL 290
Query: 266 HFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP 325
HF + AP+VS + + ++ C +P +QMV P GKY+A ++ RG
Sbjct: 291 HFLTSSIAPLVSLKDVAVGPRRLDQMFKDCLDPDHQMVAATPEAGKYLATALIVRGPQNV 350
Query: 326 KDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 385
DV I + K + + W GFK G+ P P ++ L+N I
Sbjct: 351 SDVTRNIL--RLKEQLNMIYWNEDGFKTGLCNVSPLGQP--------YSLLCLANNCCIR 400
Query: 386 EAWGRLDHKFDLMYAKRAFIHWYVGEGMEEGEFSEAREDLGALEKDYEEM 435
+ + +F+ +Y +++ +H Y E +E+ F E E + L DY +
Sbjct: 401 NKFESMLERFNKLYKRKSHVHHYT-EYLEQAYFDETLETIQNLIDDYAYL 449
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional.
Length = 454
Score = 278 bits (713), Expect = 3e-89
Identities = 139/444 (31%), Positives = 234/444 (52%), Gaps = 21/444 (4%)
Query: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKH 61
RE I++ VGQ G QIG W+ CLEHGI DG + + G D FF + +
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGIL--EDFATQGGDRKDVFFYQADDEHY 60
Query: 62 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKED--AANNYARGHYTIGKEIIDLVL 119
+PRA+ +DLEP V++ ++ YR L++ E + A NN+A G Y G+++ + ++
Sbjct: 61 IPRALLIDLEPRVINGIQNSEYRNLYNHENIFVSDHGGGAGNNWASG-YHQGEQVEEDIM 119
Query: 120 DRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPA-PQVS 178
D + + AD L+GF++ HS GGTGSG S L+E ++ Y KK Y+++P + S
Sbjct: 120 DMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMETS 179
Query: 179 TSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSI 238
VV+PYNS+LT ++DC + DN A+ I L +E PT+ N L+S ++S+
Sbjct: 180 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSAS 239
Query: 239 TASLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPI-VSAEKAYHEQLSVAEITNACFE 297
T +LR+ G +N DL +L+P PR HF + Y P+ V + + +V ++ +
Sbjct: 240 TTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQ 299
Query: 298 PANQMVKCDPR-----HGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFK 352
N MV R KY++ + +G+V P V+ ++ I+ ++ F++W P +
Sbjct: 300 TKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQ 359
Query: 353 VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEG 412
V ++ + P V ++ + ML+N T+I + + ++D + K+AF+ Y
Sbjct: 360 VALSRKSPYVQTAHRVSGL-----MLANHTSIRHLFSKCLSQYDKLRKKQAFLDNYRKFP 414
Query: 413 M----EEGEFSEAREDLGALEKDY 432
M + EF E+RE + +L +Y
Sbjct: 415 MFADNDLSEFDESREIVESLVDEY 438
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain. This
family includes the tubulin alpha, beta and gamma
chains, as well as the bacterial FtsZ family of
proteins. Members of this family are involved in polymer
formation. FtsZ is the polymer-forming protein of
bacterial cell division. It is part of a ring in the
middle of the dividing cell that is required for
constriction of cell membrane and cell envelope to yield
two daughter cells. FtsZ and tubulin are GTPases. FtsZ
can polymerise into tubes, sheets, and rings in vitro
and is ubiquitous in eubacteria and archaea. Tubulin is
the major component of microtubules.
Length = 210
Score = 245 bits (628), Expect = 1e-79
Identities = 91/222 (40%), Positives = 122/222 (54%), Gaps = 13/222 (5%)
Query: 5 ISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHVPR 64
I I VG AG IGNA WEL C EHGI PDG + D + FF E+G G + PR
Sbjct: 2 IVIGVGGAGNNIGNALWELLCKEHGIDPDGMLFHA-------DKINVFFEESGDGVYGPR 54
Query: 65 AVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRK 124
+ +D +P V++E++ G +LF L G E A NN A G+YT KE + L+ +RK
Sbjct: 55 FIAIDTDPQVLNEIKAGN--KLFIGNNLTKGLEGAGNNPAVGYYTH-KEAAEESLEEIRK 111
Query: 125 LADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTSVVEP 184
++C GL GF I GGGTGSG ++ E + YG L A+ P S VV P
Sbjct: 112 ELEKCDGLDGFFITAGLGGGTGSGAAPVIAEILKELYG---ALTVAVVTFPFTSEGVVRP 168
Query: 185 YNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTN 226
YN++L +EHSD + DN+A+ +IC LDI+ P + N
Sbjct: 169 YNAILGLKELIEHSDSVIVIDNDALLEICDNQLDIKSPAFKN 210
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain. This
domain is found in all tubulin chains, as well as the
bacterial FtsZ family of proteins. These proteins are
involved in polymer formation. Tubulin is the major
component of microtubules, while FtsZ is the
polymer-forming protein of bacterial cell division, it
is part of a ring in the middle of the dividing cell
that is required for constriction of cell membrane and
cell envelope to yield two daughter cells. FtsZ and
tubulin are GTPases, this entry is the GTPase domain.
FtsZ can polymerise into tubes, sheets, and rings in
vitro and is ubiquitous in bacteria and archaea.
Length = 192
Score = 244 bits (625), Expect = 2e-79
Identities = 74/203 (36%), Positives = 99/203 (48%), Gaps = 16/203 (7%)
Query: 49 FSTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHY 108
F G G P AV VDLEP V+D VR T Q +PE L SGK A NN+ RG
Sbjct: 1 KIKVFGVGGGG---PNAVNVDLEPGVIDGVRANTDAQALNPESLASGKIQAGNNWTRGLG 57
Query: 109 T-----IGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGK 163
+G+E + LD +R+ + G I GGGTG+G ++ E +YG
Sbjct: 58 AGADPEVGREAAEESLDEIREELEGA---DGVFITAGMGGGTGTGAAPVIAEIAK-EYGI 113
Query: 164 KSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPT 223
+ + P VV PYN+ L EH D + DN+A+ DIC R L + RP
Sbjct: 114 LT-VAVVTK--PFSFEGVVRPYNAELGLEELREHVDSLIVIDNDALLDICGRKLPL-RPA 169
Query: 224 YTNLNRLISQIVSSITASLRFDG 246
+ + N L++Q VS IT +RF G
Sbjct: 170 FKDANDLLAQAVSGITDLIRFPG 192
>gnl|CDD|217812 pfam03953, Tubulin_C, Tubulin C-terminal domain. This family
includes the tubulin alpha, beta and gamma chains.
Members of this family are involved in polymer
formation. Tubulins are GTPases. FtsZ can polymerise
into tubes, sheets, and rings in vitro and is ubiquitous
in eubacteria and archaea. Tubulin is the major
component of microtubules. (The FtsZ GTPases have been
split into their won family).
Length = 126
Score = 222 bits (567), Expect = 1e-71
Identities = 62/131 (47%), Positives = 82/131 (62%), Gaps = 5/131 (3%)
Query: 263 PRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGD 322
PR+HF + YAP+ S KA H + SV E+T F+P N MV CDPRHGKY++C +L RGD
Sbjct: 1 PRLHFLMTGYAPLTSKGKASHRKTSVLELTRQLFDPKNMMVACDPRHGKYLSCALLIRGD 60
Query: 323 VVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTT 382
V PK+V+ AI I+ K + FV+W P KV I PP +PG D+ + ML+NTT
Sbjct: 61 VSPKEVHKAIQRIQEKNSANFVEWIPNSIKVAICDVPPYGLPGSDV-----SGLMLANTT 115
Query: 383 AIAEAWGRLDH 393
AI E + R+
Sbjct: 116 AIQELFKRILE 126
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. Delta-tubulin plays an essential role in
forming the triplet microtubules of centrioles and basal
bodies.
Length = 446
Score = 201 bits (512), Expect = 1e-59
Identities = 106/464 (22%), Positives = 200/464 (43%), Gaps = 52/464 (11%)
Query: 4 CISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHVP 63
+++ +GQ G Q+G+ ++ E D+ D+ FFSE G+ +
Sbjct: 2 VVTVQLGQCGNQLGHELFDTLAKE------ASSSDDEGYKYERDAQERFFSEKSDGQPIA 55
Query: 64 RAVFVDLEPTVVDEVRTGTYRQLFH--PEQLISGKEDAANNYARGHYTIGKEIIDLVLDR 121
R+V VD+EP V++ + + + + +I + + NN+A G+Y G +I + +LD
Sbjct: 56 RSVLVDMEPKVIESTLSKSSGGTWKYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDL 115
Query: 122 VRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTSV 181
+RK ++C +GFL+ HS GGTGSG S + E + +Y + L + P + V
Sbjct: 116 IRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPESLLLNIVV--WPYTTGEV 173
Query: 182 -VEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLIS-QIVSSIT 239
V+ YN+VLT E SD + +N+ I+ IC + +++ + +++N++I+ Q+ S +
Sbjct: 174 IVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQ 233
Query: 240 ASLRFDGALNVD-------LTEFQTNLVPFPRVHFPLVTYAPIVS----AEKAYHEQLSV 288
SL G+ L + +L P P + P + A + +
Sbjct: 234 PSLDSTGSNGALAGRSTNPLNDLVEDLCPHPAYKLLTIRSLPQMPEKSLAFSTFSWSALL 293
Query: 289 AE-----ITNACFEPANQMVKCDP------------RHG-KYMACCMLYRGDVVPKDVNS 330
I + E H K +A ++ RG V
Sbjct: 294 KRLHQMLIAGSFMEEGIDWTVRPEGSAASLLSGNKSTHFNKSLANLLILRGKDVTSADER 353
Query: 331 AIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGR 390
+ + +V+W P+ + I+ + +K +++V ++SN+ I +
Sbjct: 354 KF-----RDPLLYVNWSPSPVRFSISSHKRS------FSKYEKSVTLVSNSQTIIDPLDN 402
Query: 391 LDHKFDLMYAKRAFIHWYVGEGMEEGEFSEAREDLGALEKDYEE 434
+ K M+A A++H Y G+EE +F +A L + Y+
Sbjct: 403 ILEKAWNMFASGAYLHQYEKYGLEEEDFLDAFATLEQIIASYKN 446
>gnl|CDD|214868 smart00865, Tubulin_C, Tubulin/FtsZ family, C-terminal domain.
This domain is found in the tubulin alpha, beta and
gamma chains, as well as the bacterial FtsZ family of
proteins. These proteins are GTPases and are involved in
polymer formation. Tubulin is the major component of
microtubules, while FtsZ is the polymer-forming protein
of bacterial cell division, it is part of a ring in the
middle of the dividing cell that is required for
constriction of cell membrane and cell envelope to yield
two daughter cells. FtsZ can polymerise into tubes,
sheets, and rings in vitro and is ubiquitous in bacteria
and archaea. This is the C-terminal domain.
Length = 120
Score = 97.6 bits (244), Expect = 1e-24
Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 34/150 (22%)
Query: 248 LNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAE--ITNACFEPANQMVKC 305
+NVD + +T +VP F ++ P +A L AE I++ E +N M
Sbjct: 1 INVDFADVKTVMVPMG---FAMMGIGPASGENRA----LEAAELAISSPLLEDSNIMGAK 53
Query: 306 DPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRT-IQFVDWCPTGFKVGINYQPPTVVP 364
+ D+ K+VN A+ I+ K F+ W P +
Sbjct: 54 GVLV--NITGGP----DLTLKEVNEAMERIREKADPDAFIIWG------------PVIDE 95
Query: 365 GGDLAKVQRAVCMLSN-TTAIAEAWGRLDH 393
++ ++ T I + RL
Sbjct: 96 -----ELGGDEIRVTVIATGIGSLFKRLSE 120
>gnl|CDD|100022 cd02202, FtsZ_type2, FtsZ is a GTPase that is similar to the
eukaryotic tubulins and is essential for cell division
in prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells.
Length = 349
Score = 39.3 bits (92), Expect = 0.003
Identities = 33/152 (21%), Positives = 58/152 (38%), Gaps = 18/152 (11%)
Query: 113 EIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIY 172
E++ + DR AD L+ GGGTGSG +L + + Y + YA+
Sbjct: 85 EVMRAIDDRGTSDAD------AILVIAGLGGGTGSGGAPVLAKELKERY---EEPVYALG 135
Query: 173 PAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLIS 232
P N+ + E +D + DN+A R+ +E Y +N I+
Sbjct: 136 VLPAREEGERYSANAARSLDALSEEADAIILFDNDAWK---RKGESVEE-AYDRINEEIA 191
Query: 233 QIVSSITASLRFDGALNV-----DLTEFQTNL 259
+ + + + + +V D +E L
Sbjct: 192 RRIGLLLRAGEANAGDSVGESVLDASEVINTL 223
>gnl|CDD|100024 cd06060, misato, Human Misato shows similarity with Tubulin/FtsZ
family of GTPases and is localized to the the outer
membrane of mitochondria. It has a role in mitochondrial
fusion and in mitochondrial distribution and morphology.
Mutations in its Drosophila homolog (misato) lead to
irregular chromosome segregation during mitosis.
Deletion of the budding yeast homolog DML1 is lethal and
unregulate expression of DML1 leads to mitochondrial
dispersion and abnormalities in cell morphology. The
Misato/DML1 protein family is conserved from yeast to
human, but its exact function is still unknown.
Length = 493
Score = 37.7 bits (88), Expect = 0.011
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 120 DRVRKLADQCTGLQGF-LIFHSFGG--GTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQ 176
DR+R ++C LQGF ++ G G G+ L + +YGK S L + P
Sbjct: 139 DRLRFYVEECDYLQGFQVLCDLHDGFSGVGAKCLEHLQD----EYGKASLLFPGLPPVIP 194
Query: 177 VSTS----VVEPYNSVLTTHTTLEHSD 199
S + N+ L EHS
Sbjct: 195 PDASSDKNSIRVLNTALGLAQLSEHSS 221
>gnl|CDD|227429 COG5098, COG5098, Chromosome condensation complex Condensin,
subunit D2 [Chromatin structure and dynamics / Cell
division and chromosome partitioning].
Length = 1128
Score = 33.0 bits (75), Expect = 0.39
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 172 YPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADN-EAIYDICRRNLDIERPTYTNLNRL 230
YP Q + + N ++ E D D+ EA+ D+C +++ +++L
Sbjct: 21 YPRLQDPSREL---NVIIDQLAVSEQID--ASPDSLEALIDLCHDFPHLQKELEILISKL 75
Query: 231 ISQIVSSITASLRFDGALNVDLTEFQTNL 259
+ VS + + + NV+ T Q NL
Sbjct: 76 KTSTVSDNSEDYNYLVSHNVNFTIPQCNL 104
>gnl|CDD|100020 cd02191, FtsZ, FtsZ is a GTPase that is similar to the eukaryotic
tubulins and is essential for cell division in
prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells.
Length = 303
Score = 31.8 bits (72), Expect = 0.65
Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 9/150 (6%)
Query: 110 IGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQY 169
+G E + V + + + + I GGGTG+G ++ E + + L
Sbjct: 66 LGAEAAEEVQEAIDNIPV---HVDMVFITAGLGGGTGTGGAPVVAEHLK----RIGTLTV 118
Query: 170 AIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNR 229
A+ P + N+ T + D + NE + I +E + + +
Sbjct: 119 AVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIG-EKASLE-GAFDHADE 176
Query: 230 LISQIVSSITASLRFDGALNVDLTEFQTNL 259
++ + V + ++ +G +NVD + + +
Sbjct: 177 VLVRAVGGLFGAIEIEGEINVDFADVKNVM 206
>gnl|CDD|222117 pfam13422, DUF4110, Domain of unknown function (DUF4110). This is
a family that is found predominantly at the C-terminus
of Kelch-containing proteins. However, the exact
function of this region is not known.
Length = 99
Score = 28.1 bits (63), Expect = 2.9
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 401 KRAFIHWYVGEGMEEGEFSEAREDLGALEKDYEEMGEEAGEGGEDAEEGE 450
K AF + E + E RE+L ALE D EE E A+E +
Sbjct: 49 KDAF-------DLAEERYWELREELRALE-DEEEEQAGIEEVVSLAKEKD 90
>gnl|CDD|166895 PRK00295, PRK00295, hypothetical protein; Provisional.
Length = 68
Score = 27.4 bits (61), Expect = 2.9
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 425 LGALEKDYEEMGEEAGEGGEDA 446
+ AL K EEM + G E+A
Sbjct: 42 MAALIKRQEEMVGQFGSFEEEA 63
>gnl|CDD|217450 pfam03247, Prothymosin, Prothymosin/parathymosin family.
Prothymosin alpha and parathymosin are two ubiquitous
small acidic nuclear proteins that are thought to be
involved in cell cycle progression, proliferation, and
cell differentiation.
Length = 106
Score = 28.0 bits (62), Expect = 3.7
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 411 EGMEEGEFSEAREDLGALEKDYEEMGEEAGEGGEDAEEGED 451
G E E D E++ + +E EG + EEGE+
Sbjct: 35 NGNENEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEE 75
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional.
Length = 413
Score = 28.8 bits (64), Expect = 6.1
Identities = 8/42 (19%), Positives = 11/42 (26%), Gaps = 1/42 (2%)
Query: 410 GEGMEEGEFSEAREDLGALEKDYEEMGEEAGEGGEDAEEGED 451
G G E S G+ E+ + E G
Sbjct: 94 GSGSESVG-SPTPSPSGSAEELASGLSPENTSGSSPESPASH 134
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.414
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,034,366
Number of extensions: 2250411
Number of successful extensions: 2090
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2039
Number of HSP's successfully gapped: 33
Length of query: 451
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 351
Effective length of database: 6,502,202
Effective search space: 2282272902
Effective search space used: 2282272902
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.1 bits)