RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14409
(451 letters)
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A*
3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A*
3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A*
2wbe_A* 3dco_A* ...
Length = 451
Score = 819 bits (2117), Expect = 0.0
Identities = 415/451 (92%), Positives = 437/451 (96%), Gaps = 1/451 (0%)
Query: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGK 60
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDK IGGGDDSF+TFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120
HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 RVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTS 180
R+RKLADQCTGLQGFL+FHSFGGGTGSGFTSLLMER+SVDYGKKSKL+++IYPAPQVST+
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
VVEPYNS+LTTHTTLEHSDCAFM DNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 241 SLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPAN 300
SLRFDGALNVDLTEFQTNLVP+PR+HFPL TYAP++SAEKAYHEQLSVAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 301 QMVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
QMVKCDPRHGKYMACC+LYRGDVVPKDVN+AIATIKTKR+IQFVDWCPTGFKVGINYQPP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360
Query: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGMEEGEFSE 420
TVVPGGDLAKVQRAVCMLSNTTAIAEAW RLDHKFDLMYAKRAF+HWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 421 AREDLGALEKDYEEMGEEAGEGGEDAEEGED 451
ARED+ ALEKDYEE+ GE EEGE+
Sbjct: 421 AREDMAALEKDYEEV-GVDSVEGEGEEEGEE 450
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B*
3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B*
1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B*
1sa0_B* 1sa1_B* ...
Length = 445
Score = 798 bits (2064), Expect = 0.0
Identities = 182/453 (40%), Positives = 272/453 (60%), Gaps = 12/453 (2%)
Query: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGK 60
MRE + I GQ G QIG WE+ EHGI P G D + + +++E K
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSD--LQLERINVYYNEATGNK 58
Query: 61 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 121 RVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTS 180
VRK ++ C LQGF + HS GGGTGSG +LL+ +I +Y + +++ P+P+VS +
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDT 178
Query: 181 VVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
VVEPYN+ L+ H +E++D + DNEA+YDIC R L + PTY +LN L+S +S +T
Sbjct: 179 VVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 241 SLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPAN 300
LRF G LN DL + N+VPFPR+HF + +AP+ S + L+V E+T F+ N
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKN 298
Query: 301 QMVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
M CDPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K + PP
Sbjct: 299 MMAACDPRHGRYLTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP 358
Query: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGMEEGEFSE 420
++ + + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+E
Sbjct: 359 R--------GLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTE 410
Query: 421 AREDLGALEKDYEEMGEEA--GEGGEDAEEGED 451
A ++ L +Y++ + +G + EEGED
Sbjct: 411 AESNMNDLVSEYQQYQDATADEQGEFEEEEGED 443
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule,
nucleation, GTPase, lateral interaction, structural
protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB:
1z5v_A* 1z5w_A*
Length = 475
Score = 777 bits (2008), Expect = 0.0
Identities = 136/459 (29%), Positives = 239/459 (52%), Gaps = 18/459 (3%)
Query: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKH 61
RE I++ +GQ G QIG W+ C EHGI P+ + G D FF + +
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEG--TDRKDVFFYQADDEHY 60
Query: 62 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKED--AANNYARGHYTIGKEIIDLVL 119
+PRAV +DLEP V+ + Y +L++PE + + A NN+A G ++ G++I + +
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIF 119
Query: 120 DRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAP-QVS 178
D + + AD L+GF++ HS GGTGSG S L+ER++ Y KK Y+++P ++S
Sbjct: 120 DIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMS 179
Query: 179 TSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSI 238
VV+PYNS+LT +++DC + DN A+ I L I+ P+++ +N+L+S I+S+
Sbjct: 180 DVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAS 239
Query: 239 TASLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAE-KAYHEQLSVAEITNACFE 297
T +LR+ G +N DL +L+P PR+HF + Y P+ + + A + +V ++ +
Sbjct: 240 TTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQ 299
Query: 298 PANQMVKCDPRHGK---YMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVG 354
P N MV Y+A + +G+V P V+ ++ I+ ++ F+ W P +V
Sbjct: 300 PKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVA 359
Query: 355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGME 414
++ + P + + + M++N T+I+ + R ++D + + AF+ + E M
Sbjct: 360 LSRKSPYLPSAHRV-----SGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMF 414
Query: 415 EGEFSE---AREDLGALEKDYEEMGEEAGEGGEDAEEGE 450
+ F E +RE + L +Y E+ +
Sbjct: 415 KDNFDEMDTSREIVQQLIDEYHAATRPDYISWGTQEQVD 453
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton,
protein COM cytoskeletal protein; HET: GTP; 2.5A
{Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB:
2btq_A*
Length = 473
Score = 775 bits (2003), Expect = 0.0
Identities = 158/454 (34%), Positives = 248/454 (54%), Gaps = 13/454 (2%)
Query: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQ-MPSDKMIGGGDDSFSTFFSETGAG 59
+ I + +GQAG QI + W+ CLEHGI P G SF + E+ +G
Sbjct: 3 VNNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSG 62
Query: 60 KHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVL 119
+VPRA+ VDLEP+V+D V+ LF+P LIS E A N+A G+ G+E++ V+
Sbjct: 63 SYVPRAIMVDLEPSVIDNVKAT-SGSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVM 121
Query: 120 DRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVST 179
R+ D+C + G ++ H+ GGGTGSGF +LL+E + YG+ L A+ P+PQVS+
Sbjct: 122 SRLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSS 181
Query: 180 SVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSIT 239
V EPYN+V +T +D + DNEA++D+ R +IE PT +LN LI++ ++ IT
Sbjct: 182 VVTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGIT 241
Query: 240 ASLRFDGALNVD--LTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFE 297
AS+RF G L V+ L E TNLVP P +HF + +AP+ +++ E+L + E+ + F+
Sbjct: 242 ASMRFSGFLTVEISLRELLTNLVPQPSLHFLMCAFAPLTPPDRSKFEELGIEEMIKSLFD 301
Query: 298 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINY 357
+ C P G++++ +LYRG + K + A A + + W PT FK+G
Sbjct: 302 NGSVFAACSPMEGRFLSTAVLYRGIMEDKPLADA-ALAAMREKLPLTYWIPTAFKIGYVE 360
Query: 358 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGMEEGE 417
QP ++++ +L+N T IA R+ H FD ++ ++AF +WY+ EGM E +
Sbjct: 361 QPGI--------SHRKSMVLLANNTEIARVLDRICHNFDKLWQRKAFANWYLNEGMSEEQ 412
Query: 418 FSEAREDLGALEKDYEEMGEEAGEGGEDAEEGED 451
+ R L + Y+ E + G+
Sbjct: 413 INVLRASAQELVQSYQVAEESGAKAKVQDSAGDT 446
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex,
bacterial tubulin, cytoskeleton, polymerization,
verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter
dejongeii}
Length = 426
Score = 769 bits (1988), Expect = 0.0
Identities = 163/436 (37%), Positives = 244/436 (55%), Gaps = 14/436 (3%)
Query: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGK 60
+RE +SIHVGQ G QI ++ W L EHG+ G + + + FF + GK
Sbjct: 1 VREILSIHVGQCGNQIADSFWRLALREHGLTEAGTLKEGS-NAAANSNMEVFFHKVRDGK 59
Query: 61 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120
+VPRAV VDLEP V+ + G QLF ++ AANN+ARG+ G+++ID +++
Sbjct: 60 YVPRAVLVDLEPGVIARIEGGDMSQLFDESSIVRKIPGAANNWARGYNVEGEKVIDQIMN 119
Query: 121 RVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTS 180
+ ++ GLQGFL+ HS GGG+GSG SL++ER+ Y KK +++ P+P +S S
Sbjct: 120 VIDSAVEKTKGLQGFLMTHSIGGGSGSGLGSLILERLRQAYPKKRIFTFSVVPSPLISDS 179
Query: 181 VVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
VEPYN++LT L+++D A + DNEA++ I + L+ P Y +LN +I+ IVSS+TA
Sbjct: 180 AVEPYNAILTLQRILDNADGAVLLDNEALFRIAKAKLN-RSPNYMDLNNIIALIVSSVTA 238
Query: 241 SLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPAN 300
SLRF G LN DL+EF TNLVPFP HF ++AP+ A + + + ++ F N
Sbjct: 239 SLRFPGKLNTDLSEFVTNLVPFPGNHFLTASFAPMRGAGQEGQVRTNFPDLARETFAQDN 298
Query: 301 QMVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPT--GFKVGINYQ 358
D + G Y+A L+RGDV KDV+ +ATI ++++ + + P G K+G
Sbjct: 299 FTAAIDWQQGVYLAASALFRGDVKAKDVDENMATI--RKSLNYASYMPASGGLKLGYAET 356
Query: 359 PPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGMEEGEF 418
P L L N T IA + RL +FD+M+ A+ HWY G+
Sbjct: 357 APEGFASSGL--------ALVNHTGIAAVFERLIAQFDIMFDNHAYTHWYENAGVSRDMM 408
Query: 419 SEAREDLGALEKDYEE 434
++AR + L + Y +
Sbjct: 409 AKARNQIATLAQSYRD 424
>2e4h_B Tubulin alpha-ubiquitous chain; cytoskeleton, CAP-Gly, complex
structure, solution structure, CLIP, structural protein;
NMR {Homo sapiens}
Length = 36
Score = 51.9 bits (124), Expect = 2e-09
Identities = 22/35 (62%), Positives = 27/35 (77%)
Query: 416 GEFSEAREDLGALEKDYEEMGEEAGEGGEDAEEGE 450
GEFSEARED+ ALEKDYEE+G ++ EG + E E
Sbjct: 1 GEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEE 35
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 6e-09
Identities = 55/321 (17%), Positives = 100/321 (31%), Gaps = 134/321 (41%)
Query: 98 DAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERI 157
+ A+N+ + Y G I+D+V++ L H FGG G +RI
Sbjct: 1647 NRADNHFKDTY--GFSILDIVINNPVNLT-----------IH-FGGEKG--------KRI 1684
Query: 158 SVDYGKKSKLQYAIYP-APQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRN 216
+Y S + + + + + N T++T F ++ +
Sbjct: 1685 RENY---SAMIFETIVDGKLKTEKIFKEINEHSTSYT--------FRSEKGLLS------ 1727
Query: 217 LDIERPTYTNLNRLISQ----IVS-SITASLRFDGALNVD-------LTEFQTNLVPFPR 264
+T Q ++ + L+ G + D L E+
Sbjct: 1728 ----ATQFT-------QPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEY--------- 1767
Query: 265 VHFPLVTYAPIVSAEKAYHEQL-SVAEITNACFEPANQMVKCDPRHGKYMACCMLYRG-- 321
+A L S+A++ + E ++V YRG
Sbjct: 1768 ------------AA-------LASLADVMS--IESLVEVVF--------------YRGMT 1792
Query: 322 --DVVPKD-----------VN-SAIATIKTKRTIQFVDWC-----PTGFKVGI-NYQPP- 360
VP+D +N +A ++ +Q+V TG+ V I NY
Sbjct: 1793 MQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV--VERVGKRTGWLVEIVNYNVEN 1850
Query: 361 -TVVPGGDLAKVQRAVCMLSN 380
V GDL + +L+
Sbjct: 1851 QQYVAAGDLRALDTVTNVLNF 1871
Score = 30.8 bits (69), Expect = 1.3
Identities = 44/247 (17%), Positives = 68/247 (27%), Gaps = 106/247 (42%)
Query: 16 IGNACWELY------------CLEHGIQPDGQMPSDKMI---GGGDDSFSTFFSET---- 56
IG C+E Y LE+ +G PS M+ + + ++T
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENN---EGV-PS-PMLSISNLTQEQVQDYVNKTNSHL 360
Query: 57 GAGKHV-------PRAVFV------DLE-----------PTVVDEVRT--------GTYR 84
AGK V + V L P+ +D+ R + R
Sbjct: 361 PAGKQVEISLVNGAKN-LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR 419
Query: 85 QL-----FHPEQLISGKEDAANNYARGHYTIGKEIIDL---VLD-------R------VR 123
L FH L+ + + + + + + D+ V D R
Sbjct: 420 FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK--DIQIPVYDTFDGSDLRVLSGSISE 477
Query: 124 KLADQCT-------GLQGFLIFH--SFGGGTGSGFTSLLME-------RI---------- 157
++ D F H FG G SG L R+
Sbjct: 478 RIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINP 537
Query: 158 SVDYGKK 164
DYG K
Sbjct: 538 DDDYGFK 544
Score = 30.0 bits (67), Expect = 1.9
Identities = 43/263 (16%), Positives = 80/263 (30%), Gaps = 76/263 (28%)
Query: 157 ISVDYGKKSKLQYAIYPAPQVSTSVVEPYNSVLTT--HTTLEHSDCAFMADNE--AIYDI 212
+++ +G L++ + V T+ S L + L F AD+E ++
Sbjct: 9 LTLSHGS---LEHVL----LVPTASF-FIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 213 CRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPFPRVHFPLVTY 272
+ L +S +V +FD LN+ LTEF+ + +H
Sbjct: 61 VGKFLG-----------YVSSLVEPSKVG-QFDQVLNLCLTEFENCYLEGNDIH----AL 104
Query: 273 APIVSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNSAI 332
A + + + +++K A M R K NSA+
Sbjct: 105 A------------AKLLQENDTTLVKTKELIKN-----YITARIMAKRP--FDKKSNSAL 145
Query: 333 ---ATIKTKRTI-QFVDWCPTGFKVGIN----------YQ--PPTVVPGGDLAKVQRAVC 376
+ + F G G YQ V GDL ++ +
Sbjct: 146 FRAVGEGNAQLVAIF-----GGQ--GNTDDYFEELRDLYQTYHVLV---GDL--IKFSAE 193
Query: 377 MLSNTTAIAEAWGRL-DHKFDLM 398
LS ++ +++
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNIL 216
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.2 bits (119), Expect = 1e-06
Identities = 73/451 (16%), Positives = 139/451 (30%), Gaps = 156/451 (34%)
Query: 61 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLI-------SGKE----DAANNYA----- 104
+V R L+P ++R +L P + + SGK D +Y
Sbjct: 130 NVSR-----LQP--YLKLRQALL-EL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 105 --RGHY-TIGK-EIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVD 160
+ + + + VL+ ++KL Q HS +++ + S+
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS---------SNIKLRIHSIQ 231
Query: 161 YGKKSKLQYAIYPA----------PQ------------VST---SVVEPYNSVLTTHTTL 195
+ L+ Y + ++T V + ++ TTH +L
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 196 EHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQI----VSSITASLR-------- 243
+H D E + + LD +L R + +S I S+R
Sbjct: 292 DHHSMTLTPD-EVK-SLLLKYLDCR---PQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 244 ------------FDGALNV-DLTEFQ---TNLVPFPR-VHFPLVTYAPIVSAEKAYHEQL 286
+ +LNV + E++ L FP H P + + ++ + +
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS-LIWFDVIKSD-- 403
Query: 287 SVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDW 346
V + N + + +V+ P+ + +Y ++ K N R+I VD
Sbjct: 404 -VMVVVNKLHKYS--LVEKQPKESTI-SIPSIYL-ELKVKLENEY----ALHRSI--VD- 451
Query: 347 CPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIH 406
+Y P DL LD Y +
Sbjct: 452 ---------HYNIPKTFDSDDLIPPY------------------LD-----QY-----FY 474
Query: 407 WYVG---EGMEEGE-FSEARE---DLGALEK 430
++G + +E E + R D LE+
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Score = 45.6 bits (107), Expect = 3e-05
Identities = 54/418 (12%), Positives = 116/418 (27%), Gaps = 115/418 (27%)
Query: 60 KHV---PRAVFVDLEPTVVDEV------RTGTYRQLF-----HPEQLISG--KEDAANNY 103
K V P+++ E +D + +GT R LF E+++ +E NY
Sbjct: 36 KDVQDMPKSILSKEE---IDHIIMSKDAVSGTLR-LFWTLLSKQEEMVQKFVEEVLRINY 91
Query: 104 ARGHYTIGKEIIDLVLDRVRKLADQCTGL-QGFLIFHSFGGGTGSGFTSLLMERISVDYG 162
++ ++ Q + + + ++ F + R+
Sbjct: 92 ------------KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ---- 135
Query: 163 KKSKLQYAIY---PAPQVSTSVVEPY------NSVLTTHTTLEHS-DCAFMADNEAIYDI 212
KL+ A+ PA V ++ + + L + C + I+ +
Sbjct: 136 PYLKLRQALLELRPAKNV---LI--DGVLGSGKTWVALDVCLSYKVQCKM---DFKIFWL 187
Query: 213 CRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPFPRVHFPLVTY 272
+N + L +L+ QI + T+ + + + Q L R
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL----RRLL----- 238
Query: 273 APIVSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMA--CCMLYRGDVVPKDVNS 330
K Y L V + N V + + C +L + +
Sbjct: 239 -----KSKPYENCLLV--LLN---------V-QNAKAWNAFNLSCKIL----LTTRFKQV 277
Query: 331 AIATIKTKRTIQFVDWCPTGF-----------KVGINYQ--PPTVVPGGDLAKVQRAVCM 377
T +D + Q P V+ + +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR-----RLSI 332
Query: 378 ----LSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGMEEGEFSEAREDLGALEKD 431
+ + A + W ++ L + + +E E+ + + L
Sbjct: 333 IAESIRDGLATWDNWKHVNCD-KLTTIIESSL-----NVLEPAEYRKMFDRLSVFPPS 384
Score = 31.7 bits (71), Expect = 0.59
Identities = 28/226 (12%), Positives = 59/226 (26%), Gaps = 67/226 (29%)
Query: 47 DSFSTFFSETGAGKHVPRAVFV----DLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANN 102
D S F H+P + D+ + V V H L+ ++ +
Sbjct: 376 DRLSVFPPSA----HIPTILLSLIWFDVIKSDVMVVV-----NKLHKYSLV--EKQPKES 424
Query: 103 YARGH-------------YTIGKEIIDLVLDRVRKLADQCTGLQG------FLIFHSFGG 143
Y + + I+D +D + H
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 144 GTGSGFTSLLMERISVDYG-KKSKLQYAIYPAPQVST-----SVVEPYNSVLTTH----- 192
T L + +D+ + K+++ + ++ Y + +
Sbjct: 485 EHPERMT--LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 193 --------------TTLEHSDC------AFMADNEAIYDICRRNLD 218
L S A MA++EAI++ + +
Sbjct: 543 RLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related,
rossmann fold, GTP bindi structural protein; 2.30A
{Clostridium botulinum C}
Length = 360
Score = 46.6 bits (110), Expect = 1e-05
Identities = 19/154 (12%), Positives = 43/154 (27%), Gaps = 20/154 (12%)
Query: 110 IGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQY 169
+ ++ ++ + C + + GG GSG T ++ Y K
Sbjct: 70 YAQTYYKQIIAQIMEKFSSC---DIVIFVATMAGGAGSGITPPILGLAKQMYPNKHFGFV 126
Query: 170 AIYPA----PQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYT 225
+ P + + +N + T ++ DN +
Sbjct: 127 GVLPKATEDIDEHMNAIACWND-IMRSTNEGKDISIYLLDNNKRE------------KES 173
Query: 226 NLNRLISQIVSSITASLRFDGALNVDLTEFQTNL 259
++N+ + + + VD E L
Sbjct: 174 DINKEFATLFNDFMNMSESHAEGVVDEDEISKLL 207
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding,
nucleotide-BIND structural protein; HET: GSP; 2.00A
{Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A*
Length = 427
Score = 37.2 bits (85), Expect = 0.011
Identities = 23/202 (11%), Positives = 53/202 (26%), Gaps = 28/202 (13%)
Query: 84 RQLFHPEQLISGK--EDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQG---FLIF 138
++ + + + + +D + + + G FLI
Sbjct: 95 DRIHFDGLKGAARTPSVVTDLFDPETNPNANGYLDKLAQELGRKFTNEEGEVIVDQFLIC 154
Query: 139 HSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHS 198
GGG G+G+ SL+++ I + + + P + +L+
Sbjct: 155 LGAGGGVGTGWGSLVLQLIR-EQFFPCPV-SMLISLPSGDPDEINNALVLLSEIDEFMRE 212
Query: 199 DCAF-------------MADNEAIYDICRRN------LDIERPTYTNLNRLISQIVSSIT 239
+ DN + I + N + + I
Sbjct: 213 QDRLFGNSDIKPLANVIVNDNTQMQRIIESQKGTKDLKNRYVNWKEVANDNVVSTLHEIN 272
Query: 240 ASLRFDGA--LNVDLTEFQTNL 259
G+ + D ++ L
Sbjct: 273 IIPENYGSDNVTYDPSDLIKLL 294
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid
segregation; HET: GDP; 1.90A {Bacillus cereus} PDB:
4ei8_A 4ei9_A*
Length = 389
Score = 35.1 bits (80), Expect = 0.039
Identities = 26/157 (16%), Positives = 51/157 (32%), Gaps = 13/157 (8%)
Query: 110 IGKEIIDLVLDRVRK-LADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQ 168
+G+E ++ + + + I GGGTG+G +E + +
Sbjct: 89 VGEEAFVKHETKIFEAVKQEFEDRDFIWITCGLGGGTGTGALLKAIEMLY----EHDYNF 144
Query: 169 YAI--YPAPQVSTSVVEPYNSVLTT-HTTLEHSDCAFMADNEAIYDICRRNLDIE--RPT 223
+ P + V+E S + + E + DN +Y
Sbjct: 145 GLLLTLPRDAEALKVLENATSRIRSIAMNQEAFGSIVLIDNAKLYRKFEEENPSALANEY 204
Query: 224 YTNLNRLISQIVSSI---TASLRFDGALNVDLTEFQT 257
+ N+ I+ + I T+S + D +EF
Sbjct: 205 TSYSNKYIADALHEINLVTSSFTPFSDTHFDASEFAQ 241
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 33.3 bits (77), Expect = 0.16
Identities = 22/102 (21%), Positives = 32/102 (31%), Gaps = 31/102 (30%)
Query: 283 HEQLSVAEITNACFEPANQM-VKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTI 341
E+LSV I Q+ + C KY LY ++ + +I K K T
Sbjct: 323 TEELSVEGIK--------QLYMDCQSEEHKYNVLVELY--GLL--TIGQSIIFCKKKDT- 369
Query: 342 QFVDW-----CPTGFKV-GINYQPPTVVPGGDLAKVQRAVCM 377
+ G V + G+L QR M
Sbjct: 370 --AEEIARRMTADGHTVACLT---------GNLEGAQRDAIM 400
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET:
GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A*
Length = 315
Score = 32.6 bits (73), Expect = 0.22
Identities = 23/141 (16%), Positives = 51/141 (36%), Gaps = 15/141 (10%)
Query: 112 KEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAI 171
K I+ LV ++ L D +++ +S GGG+GS L+ +L
Sbjct: 61 KVILPLVRPQIPALMDTIPEADFYIVCYSLGGGSGSVLGPLIT----------GQLADRK 110
Query: 172 YPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLI 231
+E +++ T++ +A N+ + + + + +Y ++N
Sbjct: 111 ASFVSFVVGAMESTDNLGNDIDTMK--TLEAIAVNKHLPIVVNYVPNTQGRSYESIND-- 166
Query: 232 SQIVSSITASLRFDGALNVDL 252
+I I + + L
Sbjct: 167 -EIAEKIRKVVLLVNQNHGRL 186
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.61
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 14/42 (33%)
Query: 301 QMVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQ 342
Q +K K A LY D P A+A IK T++
Sbjct: 20 QALK------KLQASLKLYADDSAP-----ALA-IKA--TME 47
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 29.9 bits (66), Expect = 1.9
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 405 IHWYVGEGMEEGEFSEAREDLGALEKDYEEMGEEAGEGGEDAEEGED 451
+ W+ G +E + E +++ ++ + GE AEE +D
Sbjct: 357 VDWFTGAALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDD 403
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.4 bits (60), Expect = 6.7
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 411 EGMEEGEFSEAREDLGALEKDYEEMGEEAGEGGEDAEE 448
+ ME+ +A++DL + E E+ A++
Sbjct: 106 KVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 143
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl
isomerase, catalytic triad, serine protease, leishmania
pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP:
c.46.1.2 c.46.1.2 d.26.1.3
Length = 373
Score = 27.7 bits (62), Expect = 8.5
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 60 KHVPRAVFVDLEPTVVDEVRTGTYRQLFHP 89
+HV A+ D++ + V T T R HP
Sbjct: 50 EHVKSAIRADVDTNLSKLVPTSTAR---HP 76
>1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family
5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP:
c.1.8.3
Length = 291
Score = 27.6 bits (61), Expect = 9.2
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 119 LDRVRKLADQCT--GLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIY--PA 174
+V ++ D + + +HS + ++ YG K + Y IY P
Sbjct: 76 KAKVERVVDAAIANDMYAIIGWHSHSAENNRSEAIRFFQEMARKYGNKPNVIYEIYNEPL 135
Query: 175 PQVSTSVVEPYN 186
++ ++PY
Sbjct: 136 QVSWSNTIKPYA 147
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.414
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,102,767
Number of extensions: 442178
Number of successful extensions: 938
Number of sequences better than 10.0: 1
Number of HSP's gapped: 917
Number of HSP's successfully gapped: 26
Length of query: 451
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 354
Effective length of database: 3,993,456
Effective search space: 1413683424
Effective search space used: 1413683424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.0 bits)