RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14409
(451 letters)
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 245
Score = 385 bits (991), Expect = e-135
Identities = 230/245 (93%), Positives = 241/245 (98%)
Query: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGK 60
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDK IGGGDDSF+TFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120
HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 RVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTS 180
R+RKLADQCTGLQGF +FHSFGGGTGSGFTSLLMER+SVDYGKKSKL+++IYPAPQVST+
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
VVEPYNS+LTTHTTLEHSDCAFM DNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 241 SLRFD 245
SLRFD
Sbjct: 241 SLRFD 245
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 243
Score = 378 bits (971), Expect = e-132
Identities = 109/244 (44%), Positives = 156/244 (63%), Gaps = 2/244 (0%)
Query: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGK 60
MRE + I GQ G QIG WE+ EHGI P G D + + + +++E K
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQ--LERINVYYNEAAGNK 58
Query: 61 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 121 RVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTS 180
VRK ++ C LQGF + HS GGGTGSG +LL+ +I +Y + +++ P+P+VS +
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDT 178
Query: 181 VVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
VVEPYN+ L+ H +E++D + DNEA+YDIC R L + PTY +LN L+S +S +T
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 241 SLRF 244
LRF
Sbjct: 239 CLRF 242
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter
dejongeii [TaxId: 48465]}
Length = 244
Score = 356 bits (915), Expect = e-123
Identities = 101/245 (41%), Positives = 148/245 (60%), Gaps = 2/245 (0%)
Query: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQP-DGQMPSDKMIGGGDDSFSTFFSETGAG 59
+ I + +GQAG QI + W+ CLEHGI P GQ G SF + E+ +G
Sbjct: 1 VNNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSG 60
Query: 60 KHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVL 119
+VPRA+ VDLEP+V+D V+ LF+P LIS E A N+A G+ G+E++ V+
Sbjct: 61 SYVPRAIMVDLEPSVIDNVKAT-SGSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVM 119
Query: 120 DRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVST 179
R+ D+C + G ++ H+ GGGTGSGF +LL+E + YG+ L A+ P+PQVS+
Sbjct: 120 SRLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSS 179
Query: 180 SVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSIT 239
V EPYN+V +T +D + DNEA++D+ R +IE PT +LN LI++ ++ IT
Sbjct: 180 VVTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGIT 239
Query: 240 ASLRF 244
AS+RF
Sbjct: 240 ASMRF 244
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 195
Score = 316 bits (811), Expect = e-108
Identities = 178/193 (92%), Positives = 188/193 (97%)
Query: 246 GALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPANQMVKC 305
GALNVDLTEFQTNLVP+PR HFPL TYAP++SAEKAYHEQLSVAEITNACFEPANQMVKC
Sbjct: 1 GALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKC 60
Query: 306 DPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPG 365
DPRHGKYMACC+LYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINY+PPTVVPG
Sbjct: 61 DPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPG 120
Query: 366 GDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGMEEGEFSEAREDL 425
GDLAKVQRAVCMLSNTTAIAEAW RLDHKFDLMYAKRAF+HWYVGEGMEEGEFSEARED+
Sbjct: 121 GDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 180
Query: 426 GALEKDYEEMGEE 438
ALEKDYEE+G +
Sbjct: 181 AALEKDYEEVGVD 193
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 184
Score = 277 bits (709), Expect = 4e-93
Identities = 66/189 (34%), Positives = 108/189 (57%), Gaps = 8/189 (4%)
Query: 246 GALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPANQMVKC 305
G LN DL + N+VPFPR+HF + +AP+ S + L+V E+T F+ N M C
Sbjct: 1 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAAC 60
Query: 306 DPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPG 365
DPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 61 DPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP----- 115
Query: 366 GDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGMEEGEFSEAREDL 425
++ + + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 116 ---RGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 172
Query: 426 GALEKDYEE 434
L +Y++
Sbjct: 173 NDLVSEYQQ 181
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter
dejongeii [TaxId: 48465]}
Length = 180
Score = 251 bits (641), Expect = 6e-83
Identities = 55/189 (29%), Positives = 96/189 (50%), Gaps = 9/189 (4%)
Query: 249 NVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPANQMVKCDPR 308
+ L E TNLVP P +HF + +AP+ +++ E+L + E+ + F+ + C P
Sbjct: 1 EISLRELLTNLVPQPSLHFLMCAFAPLTPPDRSKFEELGIEEMIKSLFDNGSVFAACSPM 60
Query: 309 HGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDL 368
G++++ +LYRG + K + A A + + W PT FK+G QP
Sbjct: 61 EGRFLSTAVLYRGIMEDKPLADA-ALAAMREKLPLTYWIPTAFKIGYVEQPGI------- 112
Query: 369 AKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGMEEGEFSEAREDLGAL 428
++++ +L+N T IA R+ H FD ++ ++AF +WY+ EGM E + + R L
Sbjct: 113 -SHRKSMVLLANNTEIARVLDRICHNFDKLWQRKAFANWYLNEGMSEEQINVLRASAQEL 171
Query: 429 EKDYEEMGE 437
+ Y+ E
Sbjct: 172 VQSYQVAEE 180
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 198
Score = 34.9 bits (80), Expect = 0.011
Identities = 19/117 (16%), Positives = 41/117 (35%), Gaps = 5/117 (4%)
Query: 123 RKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTSVV 182
++++ G I GGGTG+G ++ ++ + G L A+ P
Sbjct: 77 ERISEVLEGADMVFITTGMGGGTGTGAAPIIA-EVAKEMG---ILTVAVVTRPFPFEGRK 132
Query: 183 EPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSIT 239
+ E D NE + I ++ + + + +++ V I+
Sbjct: 133 RMQIADEGIRALAESVDSLITIPNEKLLTILGKDASLLA-AFAKADDVLAGAVRGIS 188
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga
maritima [TaxId: 2336]}
Length = 194
Score = 34.6 bits (79), Expect = 0.013
Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 5/115 (4%)
Query: 125 LADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTSVVEP 184
+ + I FGGGTG+G S ++ +I+ + G + AI P
Sbjct: 78 IREVLQDTHMVFITAGFGGGTGTGA-SPVIAKIAKEMGILT---VAIVTTPFYFEGPERL 133
Query: 185 YNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSIT 239
++ +H D N + + R++ I+ + + + Q V I+
Sbjct: 134 KKAIEGLKKLRKHVDTLIKISNNKLMEELPRDVKIKD-AFLKADETLHQGVKGIS 187
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 209
Score = 33.4 bits (76), Expect = 0.031
Identities = 28/137 (20%), Positives = 54/137 (39%), Gaps = 9/137 (6%)
Query: 103 YARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYG 162
A G+ IG+E + ++ I GGGTG+G + ++ IS G
Sbjct: 74 GAGGNPKIGEEAAKESAEEIK---AAIQDSDMVFITCGLGGGTGTGS-APVVAEISKKIG 129
Query: 163 KKSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERP 222
L A+ P V V N++ +H+D + NE +++I N+ ++
Sbjct: 130 ---ALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEI-VPNMPLKL- 184
Query: 223 TYTNLNRLISQIVSSIT 239
+ + ++ V +
Sbjct: 185 AFKVADEVLINAVKGLV 201
>gi|115385463|ref|XP_001209278.1|(7-278:285) hypothetical protein
ATEG_09976 [Aspergillus terreus NIH2624]
gi|114187725|gb|EAU29425.1| hypothetical protein
ATEG_09976 [Aspergillus terreus NIH2624] E=1e-100
s/c=1.35 id=66% cov=100%
Length = 272
Score = 29.2 bits (65), Expect = 0.81
Identities = 8/52 (15%), Positives = 20/52 (38%)
Query: 105 RGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMER 156
G +T + D V+ +++ + ++ HS G + + L +
Sbjct: 110 LGFWTSWTNVRDSVMKHLKETMAANPDYELVVVGHSLGAAVATLAAADLRTK 161
>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 156
Score = 28.7 bits (63), Expect = 0.96
Identities = 11/84 (13%), Positives = 24/84 (28%)
Query: 291 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTG 350
I + + + + +A ++ + ++D +G
Sbjct: 58 IFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSG 117
Query: 351 FKVGINYQPPTVVPGGDLAKVQRA 374
G TV+ GG V+R
Sbjct: 118 GTSGAEAGTLTVMLGGPEEAVERV 141
>d1st6a4 a.24.9.1 (A:372-488) Vinculin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 117
Score = 27.8 bits (62), Expect = 1.0
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 88 HPEQLISGKEDAANN-----YARGHYTIGKEIIDLVLDRVRKLADQCTGLQ 133
+ +Q I+ K DAA N G+E I ++ RK+A+ C +
Sbjct: 8 NSKQAIAKKIDAAQNWLADPNGGS---EGEEHIRGIMSEARKVAELCEEPK 55
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 119
Score = 27.4 bits (61), Expect = 1.8
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 89 PEQLISGKEDAANNY----ARGHYTIGKEIIDLVLDRVRKLADQCTGLQ 133
LI K + A + G++ I +LD K + C G +
Sbjct: 17 ALALIDSKMNQAKGWLRDPNAPPGDAGEQAIRQILDEAGKAGELCAGKE 65
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 198
Score = 27.2 bits (60), Expect = 3.3
Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 5/115 (4%)
Query: 125 LADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTSVVEP 184
+ + G + GGGTG+G ++ I+ G L + P
Sbjct: 79 IEELLRGADMVFVTAGEGGGTGTGGAPVVAS-IARKLG---ALTVGVVTRPFSFEGKRRS 134
Query: 185 YNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSIT 239
+ E D + N+ + + + + + + + ++ V IT
Sbjct: 135 NQAENGIAALRESCDTLIVIPNDRLLQMGDAAVSLMD-AFRSADEVLLNGVQGIT 188
>d2qamt1 d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherichia coli
[TaxId: 562]}
Length = 93
Score = 25.8 bits (57), Expect = 4.0
Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 18/76 (23%)
Query: 273 APIVSAEKAYHEQLSVAEITNACFEPANQMV-KCDPRHGKY---MACCMLYRGDVVPKDV 328
AP VS EKA E +N +V K K A L+ +V + V
Sbjct: 13 APHVS-EKASTAM-----------EKSNTIVLKVAKDATKAEIKAAVQKLF--EVEVEVV 58
Query: 329 NSAIATIKTKRTIQFV 344
N+ + K KR Q +
Sbjct: 59 NTLVVKGKVKRHGQRI 74
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 335
Score = 27.2 bits (59), Expect = 4.5
Identities = 17/198 (8%), Positives = 49/198 (24%), Gaps = 13/198 (6%)
Query: 215 RNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPFPR----VHFPLV 270
R +D+ RP + ++ S + ++ +G + + + + +
Sbjct: 21 RFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMKYFEE 80
Query: 271 TYAPIVSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNS 330
S + ++ P + + + A + +
Sbjct: 81 DAFLAESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSI--------DSEMA 132
Query: 331 AIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGR 390
I + + V + + +L + + +S A+ E G
Sbjct: 133 FIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEPKLPFPRVSYDKAL-EILGD 191
Query: 391 LDHKFDLMYAKRAFIHWY 408
L +
Sbjct: 192 LGKEIPWGEDIDTEGERL 209
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS)
{Thermus thermophilus [TaxId: 274]}
Length = 370
Score = 26.8 bits (58), Expect = 5.6
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 8 HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGG 44
++ G Q + L +G+ DG+ D G
Sbjct: 52 YIDDTGRQAAETLFALR--HYGLTWDGKEKYDHFAGR 86
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.414
Gapped
Lambda K H
0.267 0.0583 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,710,782
Number of extensions: 80235
Number of successful extensions: 208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 17
Length of query: 451
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 363
Effective length of database: 1,199,356
Effective search space: 435366228
Effective search space used: 435366228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.9 bits)