BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14410
         (325 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2EP8|A Chain A, Solution Structure Of The Brct Domain From Human
           Pescadillo Homolog 1
          Length = 100

 Score =  115 bits (289), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 60/121 (49%), Positives = 69/121 (57%), Gaps = 28/121 (23%)

Query: 50  KLKRLFEGLKVFLNREVPREPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRP 109
           K K+LFEGLK FLNREVPRE L   +RSFG +VSWDK+L +GAT+   D  ITHQIVDRP
Sbjct: 8   KHKKLFEGLKFFLNREVPREALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRP 67

Query: 110 SIGKQYISRVFDSINAKQLAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKY 169
                 I R                             YVQPQWVFDS+NA+ L PV +Y
Sbjct: 68  GQQTSVIGRC----------------------------YVQPQWVFDSVNARLLLPVAEY 99

Query: 170 F 170
           F
Sbjct: 100 F 100



 Score = 44.7 bits (104), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/35 (51%), Positives = 24/35 (68%)

Query: 240 RDPKNIQTLCKYYVQPQWVFDSINAKQLAPVEKYF 274
           R  +    + + YVQPQWVFDS+NA+ L PV +YF
Sbjct: 66  RPGQQTSVIGRCYVQPQWVFDSVNARLLLPVAEYF 100



 Score = 44.3 bits (103), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/23 (73%), Positives = 20/23 (86%)

Query: 183 YVQPQWVFDSINAKQLAPVEKYF 205
           YVQPQWVFDS+NA+ L PV +YF
Sbjct: 78  YVQPQWVFDSVNARLLLPVAEYF 100



 Score = 44.3 bits (103), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/23 (73%), Positives = 20/23 (86%)

Query: 285 YVQPQWVFDSINAKQLAPVEKYF 307
           YVQPQWVFDS+NA+ L PV +YF
Sbjct: 78  YVQPQWVFDSVNARLLLPVAEYF 100


>pdb|3TJI|A Chain A, Crystal Structure Of An Enolase From Enterobacter Sp. 638
           (Efi Target Efi-501662) With Bound Mg
 pdb|3TJI|B Chain B, Crystal Structure Of An Enolase From Enterobacter Sp. 638
           (Efi Target Efi-501662) With Bound Mg
 pdb|3TJI|C Chain C, Crystal Structure Of An Enolase From Enterobacter Sp. 638
           (Efi Target Efi-501662) With Bound Mg
 pdb|3TJI|D Chain D, Crystal Structure Of An Enolase From Enterobacter Sp. 638
           (Efi Target Efi-501662) With Bound Mg
          Length = 422

 Score = 29.3 bits (64), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 195 AKQLAPVEKYFIGVTLPPHLSPFIDTTKTEHYVP 228
           AKQL P + YFI   LPP  S +++  + +  VP
Sbjct: 242 AKQLEPFQPYFIEDILPPQQSAWLEQVRQQSCVP 275


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,982,890
Number of Sequences: 62578
Number of extensions: 412259
Number of successful extensions: 1032
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1010
Number of HSP's gapped (non-prelim): 23
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)