Query         psy14410
Match_columns 325
No_of_seqs    211 out of 347
Neff          2.8 
Searched_HMMs 46136
Date          Fri Aug 16 19:10:09 2013
Command       hhsearch -i /work/01045/syshi/Psyhhblits/psy14410.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14410hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 KOG2481|consensus              100.0 1.4E-50   3E-55  401.5   8.2  159   14-238   288-446 (570)
  2 COG5163 NOP7 Protein required  100.0 4.9E-38 1.1E-42  307.9   2.5  125   48-238   344-468 (591)
  3 KOG2481|consensus               99.7 1.8E-18   4E-23  173.4   2.4  105  196-307   325-441 (570)
  4 COG5163 NOP7 Protein required   99.4 3.6E-14 7.7E-19  140.9  -0.8   89  196-285   348-449 (591)
  5 PF00533 BRCT:  BRCA1 C Terminu  98.8   1E-08 2.2E-13   73.8   4.6   47   52-109     3-51  (78)
  6 smart00292 BRCT breast cancer   98.4 5.2E-07 1.1E-11   62.8   5.5   76   53-161     1-80  (80)
  7 cd00027 BRCT Breast Cancer Sup  98.0 1.2E-05 2.7E-10   54.6   5.3   46   57-113     1-49  (72)
  8 KOG0966|consensus               97.5   3E-05 6.5E-10   82.6   1.5   87   47-166   626-716 (881)
  9 KOG0966|consensus               68.6     3.4 7.3E-05   45.5   2.3   24  146-169   857-880 (881)
 10 PF14538 Raptor_N:  Raptor N-te  66.5     1.4 3.1E-05   38.7  -0.7   40  257-302   112-151 (154)
 11 KOG3226|consensus               60.4     9.5 0.00021   39.5   3.6  101   48-188   311-415 (508)
 12 PLN03122 Poly [ADP-ribose] pol  58.8      21 0.00045   39.4   6.0   92   50-172   185-278 (815)
 13 PF08372 PRT_C:  Plant phosphor  58.1     3.8 8.2E-05   36.7   0.4   70   13-82     34-109 (156)
 14 KOG2043|consensus               45.0      23  0.0005   39.4   3.8   77   58-169   660-736 (896)
 15 KOG1929|consensus               27.4      71  0.0015   35.5   4.0   90   50-174   489-580 (811)
 16 PF14538 Raptor_N:  Raptor N-te  26.3      21 0.00045   31.6  -0.2   13  257-269   139-151 (154)
 17 PF07833 Cu_amine_oxidN1:  Copp  26.3      35 0.00075   25.4   1.1   17   70-86      8-24  (93)
 18 PF12738 PTCB-BRCT:  twin BRCT   25.0      92   0.002   22.3   3.1   32   68-110    13-44  (63)
 19 KOG3548|consensus               24.8      30 0.00065   39.4   0.6   33   51-83    922-955 (1176)
 20 PF03474 DMA:  DMRTA motif;  In  24.3      46   0.001   24.1   1.3   26   50-83      7-32  (39)
 21 KOG3936|consensus               23.4      84  0.0018   26.8   2.9   24   56-79     76-99  (100)
 22 PLN03123 poly [ADP-ribose] pol  22.9 1.2E+02  0.0025   34.5   4.7   90   50-171   389-480 (981)
 23 PRK06063 DNA polymerase III su  22.6 1.1E+02  0.0024   29.5   3.9   32   52-83    230-263 (313)
 24 COG3407 MVD1 Mevalonate pyroph  21.8 3.3E+02  0.0072   27.4   7.1   61    2-64     34-95  (329)

No 1  
>KOG2481|consensus
Probab=100.00  E-value=1.4e-50  Score=401.45  Aligned_cols=159  Identities=53%  Similarity=0.887  Sum_probs=146.7

Q ss_pred             CCCCcccccccCCCCCCcchhHHHHHHHHHHHHHHhhhhCCCCCceEEEecccChhHHHHHHHhcCceeecCccccCCCC
Q psy14410         14 MGQEEEDAAEFDYFPTNSEADAEKVEEFKREAEKVRKLKRLFEGLKVFLNREVPREPLTLALRSFGAQVSWDKTLFVGAT   93 (325)
Q Consensus        14 ~~~~~e~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~LF~g~~FflsREvPre~LefiIrSfGG~V~wd~~~~~ga~   93 (325)
                      ...+|++|.|+|+||++++ ...+.++++++.+..+++++||+||+|||||||||++|+||||||||+|+||+ +|.|||
T Consensus       288 ~~~ee~~e~e~def~~~~~-~~~~~~~~~~e~~~~s~~kslF~glkFfl~reVPresL~fiI~s~GG~V~wd~-~~~g~~  365 (570)
T KOG2481|consen  288 PETEEEEEPELDEFPANGE-LSAQEDKMRQELEEQSSHKSLFSGLKFFLNREVPRESLEFIIRSFGGKVSWDP-LGIGAT  365 (570)
T ss_pred             hhhhhhccccccccccccc-hhhhHHHHHhhhhhhhhHHHHhhcceeeeeccCchHHHHHHHHHcCCceecCc-cCCCCc
Confidence            3344556899999999887 34566888999999999999999999999999999999999999999999999 999999


Q ss_pred             CCCCCCCCcEEEecCCCCCcccccchhhhhhhccccccchhcccccCCCCCCcccccCcchhccccccccCCcccccccc
Q psy14410         94 FPEDDESITHQIVDRPSIGKQYISRVFDSINAKQLAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYFIGV  173 (325)
Q Consensus        94 ~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~~~~ldp~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y~pG~  173 (325)
                      |+++|++|||||||||.+..++++|                                                       
T Consensus       366 ~~~~d~~ITH~IvDrP~~~~~v~gR-------------------------------------------------------  390 (570)
T KOG2481|consen  366 YDESDERITHQIVDRPGQQTSVIGR-------------------------------------------------------  390 (570)
T ss_pred             ccccccceeeeeecccCccceeeee-------------------------------------------------------
Confidence            9999999999999999999999888                                                       


Q ss_pred             cCCCCCCceEEeccceeecccccccCCCCcccCCCCCCCCcCCceecCCCCCCCCCCCcCccccc
Q psy14410        174 TLPPHMSSYYVQPQWVFDSINAKQLAPVEKYFIGVTLPPHLSPFIDTTKTEHYVPPEAEDPENER  238 (325)
Q Consensus       174 ~lPpHlsp~YVQPQwVfDsiN~~~Llp~~~Y~pG~~LPPHLSPFv~~~~~~~YvP~e~~~e~de~  238 (325)
                              .||||||||||+|++.++|+++|++|++||||||||++...+ +|+|+|++++..++
T Consensus       391 --------~YvQPQWvfDsvNar~llpt~~Y~~G~~LPpHlSPFv~~~~~-~yiP~e~l~~~~~~  446 (570)
T KOG2481|consen  391 --------TYVQPQWVFDSVNARLLLPTEKYFPGKALPPHLSPFVDEKEG-DYIPREELELLEKT  446 (570)
T ss_pred             --------eeecchhhhhhccchhhccHhhhCCCccCCcccCcccccccc-CcCChHHHhhhhhh
Confidence                    899999999999999999999999999999999999999888 99999988865555


No 2  
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=100.00  E-value=4.9e-38  Score=307.95  Aligned_cols=125  Identities=42%  Similarity=0.655  Sum_probs=115.5

Q ss_pred             HhhhhCCCCCceEEEecccChhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhhhcc
Q psy14410         48 VRKLKRLFEGLKVFLNREVPREPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQ  127 (325)
Q Consensus        48 ~~~~~~LF~g~~FflsREvPre~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~~~~  127 (325)
                      -..++.||+|++|||+||||+..|+|+|+||||+|+|+..++.+..+.+.|+.|||||||||.+..++-+|         
T Consensus       344 ~Ss~~slFS~f~FyisreVp~dsLefiilscGG~V~~~p~~~~i~~~~~vD~~vth~i~drp~~~~kvegr---------  414 (591)
T COG5163         344 CSSLKSLFSGFKFYISREVPGDSLEFIILSCGGSVVGSPCEADIHVSEKVDEKVTHQIVDRPVMKNKVEGR---------  414 (591)
T ss_pred             CcchhhhhhceEEEEeccccchHHHHHHHHcCCcccCchhhccCCchhhccchhhhhhccchhhhhhhcce---------
Confidence            34578899999999999999999999999999999999999999999999999999999999998887777         


Q ss_pred             ccccchhcccccCCCCCCcccccCcchhccccccccCCcccccccccCCCCCCceEEeccceeecccccccCCCCcccCC
Q psy14410        128 LAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYFIGVTLPPHMSSYYVQPQWVFDSINAKQLAPVEKYFIG  207 (325)
Q Consensus       128 ldp~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y~pG~~lPpHlsp~YVQPQwVfDsiN~~~Llp~~~Y~pG  207 (325)
                                                                            +||||||||||+|.++|.+++.|++|
T Consensus       415 ------------------------------------------------------tYiQPQw~fDsiNkG~l~~~~~Y~~G  440 (591)
T COG5163         415 ------------------------------------------------------TYIQPQWLFDSINKGKLACVENYCVG  440 (591)
T ss_pred             ------------------------------------------------------eeechHHHHhhhccccchhhhhcccc
Confidence                                                                  89999999999999999999999999


Q ss_pred             CCCCCCcCCceecCCCCCCCCCCCcCccccc
Q psy14410        208 VTLPPHLSPFIDTTKTEHYVPPEAEDPENER  238 (325)
Q Consensus       208 ~~LPPHLSPFv~~~~~~~YvP~e~~~e~de~  238 (325)
                      ++||||||||++..   +|+|.+.+++-.++
T Consensus       441 ~~LPpHlSPf~~v~---~ydP~a~l~~~ee~  468 (591)
T COG5163         441 KRLPPHLSPFASVD---SYDPRASLMTMEET  468 (591)
T ss_pred             ccCCCCcCcccccc---ccCCcchhhhcccc
Confidence            99999999999876   69999887754444


No 3  
>KOG2481|consensus
Probab=99.71  E-value=1.8e-18  Score=173.35  Aligned_cols=105  Identities=38%  Similarity=0.590  Sum_probs=83.7

Q ss_pred             cccCCCCcccCCCCCCCCcCCceecCCCCCCC---C---CCCcCccccc-----ccCCC-Cceeeeeeeeccceeeeecc
Q psy14410        196 KQLAPVEKYFIGVTLPPHLSPFIDTTKTEHYV---P---PEAEDPENER-----LRDPK-NIQTLCKYYVQPQWVFDSIN  263 (325)
Q Consensus       196 ~~Llp~~~Y~pG~~LPPHLSPFv~~~~~~~Yv---P---~e~~~e~de~-----VdrP~-n~~~~~R~YvQPQwvfD~iN  263 (325)
                      +.|...-+++.....|.----|+....| |-|   |   -..+++.|.+     ||||. ..+|++|+||||||||||||
T Consensus       325 kslF~glkFfl~reVPresL~fiI~s~G-G~V~wd~~~~g~~~~~~d~~ITH~IvDrP~~~~~v~gR~YvQPQWvfDsvN  403 (570)
T KOG2481|consen  325 KSLFSGLKFFLNREVPRESLEFIIRSFG-GKVSWDPLGIGATYDESDERITHQIVDRPGQQTSVIGRTYVQPQWVFDSVN  403 (570)
T ss_pred             HHHhhcceeeeeccCchHHHHHHHHHcC-CceecCccCCCCcccccccceeeeeecccCccceeeeeeeecchhhhhhcc
Confidence            4455566778888888887777766555 333   2   3445666663     99999 79999999999999999999


Q ss_pred             cCccccCccccCCCCCCCccccccCceeEEeccccccCCCcccc
Q psy14410        264 AKQLAPVEKYFIGVTLPPHLYYVQPQWVFDSINAKQLAPVEKYF  307 (325)
Q Consensus       264 ~~~llp~~~Y~~g~~lppHlSYvqpQwvfD~vN~~~llp~e~Y~  307 (325)
                      +|.|||+++|++|++||||+|.      |-++-.+.++|.|.-.
T Consensus       404 ar~llpt~~Y~~G~~LPpHlSP------Fv~~~~~~yiP~e~l~  441 (570)
T KOG2481|consen  404 ARLLLPTEKYFPGKALPPHLSP------FVDEKEGDYIPREELE  441 (570)
T ss_pred             chhhccHhhhCCCccCCcccCc------cccccccCcCChHHHh
Confidence            9999999999999999999994      6677777888876544


No 4  
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=99.39  E-value=3.6e-14  Score=140.87  Aligned_cols=89  Identities=38%  Similarity=0.546  Sum_probs=63.4

Q ss_pred             cccCCCCcccCCCCCCCCcCCceecCCCCCCC---CCCCcC----cccc-----cccCCC-Cceeeeeeeeccceeeeec
Q psy14410        196 KQLAPVEKYFIGVTLPPHLSPFIDTTKTEHYV---PPEAED----PENE-----RLRDPK-NIQTLCKYYVQPQWVFDSI  262 (325)
Q Consensus       196 ~~Llp~~~Y~pG~~LPPHLSPFv~~~~~~~Yv---P~e~~~----e~de-----~VdrP~-n~~~~~R~YvQPQwvfD~i  262 (325)
                      ..|...-.+.+....|-..--|+.-..| |-|   |-++..    ..|+     -||||- ...+-+|+|||||||||||
T Consensus       348 ~slFS~f~FyisreVp~dsLefiilscG-G~V~~~p~~~~i~~~~~vD~~vth~i~drp~~~~kvegrtYiQPQw~fDsi  426 (591)
T COG5163         348 KSLFSGFKFYISREVPGDSLEFIILSCG-GSVVGSPCEADIHVSEKVDEKVTHQIVDRPVMKNKVEGRTYIQPQWLFDSI  426 (591)
T ss_pred             hhhhhceEEEEeccccchHHHHHHHHcC-CcccCchhhccCCchhhccchhhhhhccchhhhhhhcceeeechHHHHhhh
Confidence            3344555556666666666566554444 222   222211    1122     299997 7778999999999999999


Q ss_pred             ccCccccCccccCCCCCCCcccc
Q psy14410        263 NAKQLAPVEKYFIGVTLPPHLYY  285 (325)
Q Consensus       263 N~~~llp~~~Y~~g~~lppHlSY  285 (325)
                      |+|+|.+++.|++|++||||||.
T Consensus       427 NkG~l~~~~~Y~~G~~LPpHlSP  449 (591)
T COG5163         427 NKGKLACVENYCVGKRLPPHLSP  449 (591)
T ss_pred             ccccchhhhhccccccCCCCcCc
Confidence            99999999999999999999995


No 5  
>PF00533 BRCT:  BRCA1 C Terminus (BRCT) domain;  InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=98.76  E-value=1e-08  Score=73.83  Aligned_cols=47  Identities=30%  Similarity=0.420  Sum_probs=40.6

Q ss_pred             hCCCCCceEEE--ecccChhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCC
Q psy14410         52 KRLFEGLKVFL--NREVPREPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRP  109 (325)
Q Consensus        52 ~~LF~g~~Ffl--sREvPre~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP  109 (325)
                      .++|+|++|+|  .....|+.|+.+|+++||++..           ..++..||.|++++
T Consensus         3 ~~~F~g~~f~i~~~~~~~~~~l~~~i~~~GG~v~~-----------~~~~~~thvI~~~~   51 (78)
T PF00533_consen    3 PKIFEGCTFCISGFDSDEREELEQLIKKHGGTVSN-----------SFSKKTTHVIVGNP   51 (78)
T ss_dssp             TTTTTTEEEEESSTSSSHHHHHHHHHHHTTEEEES-----------SSSTTSSEEEESSS
T ss_pred             CCCCCCEEEEEccCCCCCHHHHHHHHHHcCCEEEe-----------ecccCcEEEEeCCC
Confidence            57999999999  4478899999999999999953           34678899999997


No 6  
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=98.42  E-value=5.2e-07  Score=62.81  Aligned_cols=76  Identities=25%  Similarity=0.371  Sum_probs=53.8

Q ss_pred             CCCCCceEEEec---ccChhHHHHHHHhcCceeecCccccCCCCCCCCCC-CCcEEEecCCCCCcccccchhhhhhhccc
Q psy14410         53 RLFEGLKVFLNR---EVPREPLTLALRSFGAQVSWDKTLFVGATFPEDDE-SITHQIVDRPSIGKQYISRVFDSINAKQL  128 (325)
Q Consensus        53 ~LF~g~~FflsR---EvPre~LefiIrSfGG~V~wd~~~~~ga~~~e~d~-~ITHqIvDRP~~~~~~~~r~~~s~~~~~l  128 (325)
                      ++|+|++|+++.   ...++.|...|+++||++.-..           ++ +.||.|++++......    +......  
T Consensus         1 ~~f~g~~~~~~g~~~~~~~~~l~~~i~~~Gg~~~~~~-----------~~~~~thvi~~~~~~~~~~----~~~~~~~--   63 (80)
T smart00292        1 KLFKGKVFVITGKFDKNERDELKELIEALGGKVTSSL-----------SSKTTTHVIVGSPEGGKLE----LLLAIAL--   63 (80)
T ss_pred             CccCCeEEEEeCCCCCccHHHHHHHHHHcCCEEeccc-----------CccceeEEEEcCCCCccHH----HHHHHHc--
Confidence            589999999996   4678999999999999986221           22 6799999997654321    0111112  


Q ss_pred             cccchhcccccCCCCCCcccccCcchhcccccc
Q psy14410        129 APVEKYFIGVTLPPHLSSYYVQPQWVFDSINAK  161 (325)
Q Consensus       129 dp~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~  161 (325)
                                      ....|.|+|+.||+.++
T Consensus        64 ----------------~~~iV~~~Wi~~~~~~~   80 (80)
T smart00292       64 ----------------GIPIVTEDWLLDCLKAG   80 (80)
T ss_pred             ----------------CCCCccHHHHHHHHHCc
Confidence                            23478999999998753


No 7  
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=98.02  E-value=1.2e-05  Score=54.61  Aligned_cols=46  Identities=24%  Similarity=0.348  Sum_probs=37.2

Q ss_pred             CceEEEecc---cChhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCc
Q psy14410         57 GLKVFLNRE---VPREPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGK  113 (325)
Q Consensus        57 g~~FflsRE---vPre~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~  113 (325)
                      |++|+++..   ..++.|+-+|+++||++..+.           +.+.||.|+++.....
T Consensus         1 ~~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~-----------~~~~thvI~~~~~~~~   49 (72)
T cd00027           1 GLTFVITGDLPSEERDELKELIEKLGGKVTSSV-----------SKKTTHVIVGSDAGPK   49 (72)
T ss_pred             CCEEEEEecCCCcCHHHHHHHHHHcCCEEeccc-----------cCCceEEEECCCCCch
Confidence            678999985   589999999999999998543           2578999999876543


No 8  
>KOG0966|consensus
Probab=97.54  E-value=3e-05  Score=82.63  Aligned_cols=87  Identities=21%  Similarity=0.329  Sum_probs=62.5

Q ss_pred             HHhhhhCCCCCceEEEecccC----hhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhh
Q psy14410         47 KVRKLKRLFEGLKVFLNREVP----REPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDS  122 (325)
Q Consensus        47 ~~~~~~~LF~g~~FflsREvP----re~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s  122 (325)
                      ++.+++++|.|+-|++..-++    +..|+-+|.-+||+|.-+..           ++-||-|.-    +..-..|++..
T Consensus       626 ~~~~~s~if~gl~f~Vlsgt~~~~tk~~le~~ivenGG~iv~nv~-----------p~~~~ci~~----a~~et~~vk~~  690 (881)
T KOG0966|consen  626 KVAKISNIFDGLEFCVLSGTSETHTKAKLEEIIVENGGKIVQNVG-----------PSDTLCIAT----AGKETTRVKAQ  690 (881)
T ss_pred             cccchhhhhcCeeEEEecCCcccccHHHHHHHHHHcCCEEEEcCC-----------CCCcceEEe----ccccchHHHHH
Confidence            456788999999999987443    67799999999999875431           123565531    11223455555


Q ss_pred             hhhccccccchhcccccCCCCCCcccccCcchhccccccccCCc
Q psy14410        123 INAKQLAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPV  166 (325)
Q Consensus       123 ~~~~~ldp~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~  166 (325)
                      +.+.+-|                  .|.|+||.||.++++++|.
T Consensus       691 ~~~~~cd------------------Vl~p~Wlldcc~~~~l~p~  716 (881)
T KOG0966|consen  691 AIKRSCD------------------VLKPAWLLDCCKKQRLLPW  716 (881)
T ss_pred             HHhccCc------------------eeeHHHHHHHHhhhhcccc
Confidence            5555555                  8999999999999998875


No 9  
>KOG0966|consensus
Probab=68.58  E-value=3.4  Score=45.54  Aligned_cols=24  Identities=42%  Similarity=0.656  Sum_probs=20.4

Q ss_pred             cccccCcchhccccccccCCcccc
Q psy14410        146 SYYVQPQWVFDSINAKQLAPVEKY  169 (325)
Q Consensus       146 ~~yvqPQWv~Dcin~~~llp~~~y  169 (325)
                      |..++|.||-+|+|.+.++|.+.|
T Consensus       857 rkv~~~~wv~~s~~~~~~~~e~~~  880 (881)
T KOG0966|consen  857 RKVVAPSWVDHSINENCLLPEEDF  880 (881)
T ss_pred             ccccCHHHHHHhhcccccCccccC
Confidence            468899999999999999988766


No 10 
>PF14538 Raptor_N:  Raptor N-terminal CASPase like domain
Probab=66.51  E-value=1.4  Score=38.70  Aligned_cols=40  Identities=35%  Similarity=0.540  Sum_probs=33.2

Q ss_pred             eeeeecccCccccCccccCCCCCCCccccccCceeEEeccccccCC
Q psy14410        257 WVFDSINAKQLAPVEKYFIGVTLPPHLYYVQPQWVFDSINAKQLAP  302 (325)
Q Consensus       257 wvfD~iN~~~llp~~~Y~~g~~lppHlSYvqpQwvfD~vN~~~llp  302 (325)
                      |+||= |....+|++-|-.-..|..+.-|     ||||-||+.+|+
T Consensus       112 w~f~~-~~tqyip~si~dL~~~lg~Psi~-----V~DC~~AG~il~  151 (154)
T PF14538_consen  112 WVFNK-NYTQYIPLSIYDLQSWLGSPSIY-----VFDCSNAGSILN  151 (154)
T ss_pred             EEEcC-CCCcceEEEHHHHHHhcCCCEEE-----EEECCcHHHHHH
Confidence            77764 55577888888888888888888     999999998876


No 11 
>KOG3226|consensus
Probab=60.38  E-value=9.5  Score=39.48  Aligned_cols=101  Identities=26%  Similarity=0.438  Sum_probs=61.7

Q ss_pred             HhhhhCCCCCceEEEecccC--hhHHHHHHHhcCcee--ecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhh
Q psy14410         48 VRKLKRLFEGLKVFLNREVP--REPLTLALRSFGAQV--SWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSI  123 (325)
Q Consensus        48 ~~~~~~LF~g~~FflsREvP--re~LefiIrSfGG~V--~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~  123 (325)
                      ...+++|.+|..|.||-=.-  |..|.--....|++.  -|+.             .-||-|+.=|...+.      ..+
T Consensus       311 t~el~klL~GVV~VlSGfqNP~Rs~LRskAl~LGAkY~pDW~~-------------gsThLICAF~NTPKy------~QV  371 (508)
T KOG3226|consen  311 TTELSKLLEGVVFVLSGFQNPERSTLRSKALTLGAKYQPDWNA-------------GSTHLICAFPNTPKY------RQV  371 (508)
T ss_pred             chhHHHhhhceEEEEecccCchHHHHHHHHHhhcccccCCcCC-------------CceeEEEecCCCcch------hhc
Confidence            34688999999999998433  444444344556653  4433             349999987754331      001


Q ss_pred             hhccccccchhcccccCCCCCCcccccCcchhccccccccCCcccccccccCCCCCCceEEeccc
Q psy14410        124 NAKQLAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYFIGVTLPPHMSSYYVQPQW  188 (325)
Q Consensus       124 ~~~~ldp~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y~pG~~lPpHlsp~YVQPQw  188 (325)
                      ..+                  --.+|.-.||.||-.-.++||..+|+--.--|..-+.   |||-
T Consensus       372 ~g~------------------Gg~IV~keWI~~Cy~~kk~lp~rrYlm~~~~p~~p~s---~pq~  415 (508)
T KOG3226|consen  372 EGN------------------GGTIVSKEWITECYAQKKLLPIRRYLMHAGKPWRPSS---SPQD  415 (508)
T ss_pred             ccC------------------CceEeeHHHHHHHHHHHhhccHHHHHhcCCCCCCCCC---Chhh
Confidence            111                  1125556788889888888888888655545554444   5553


No 12 
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=58.79  E-value=21  Score=39.39  Aligned_cols=92  Identities=18%  Similarity=0.317  Sum_probs=60.1

Q ss_pred             hhhCCCCCceEEEeccc--ChhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhhhcc
Q psy14410         50 KLKRLFEGLKVFLNREV--PREPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQ  127 (325)
Q Consensus        50 ~~~~LF~g~~FflsREv--Pre~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~~~~  127 (325)
                      ...+.|.|++|.|+-..  +|+.+.-+|.+.||+|+-.        .    ...||.|+---...+...++ .+...+.|
T Consensus       185 ~~~kpL~G~~fviTGtl~~sr~elK~~Ie~~GGkvsss--------V----s~~T~lIvt~~ev~k~gsSK-lkkAk~lg  251 (815)
T PLN03122        185 APGKPFSGMMISLSGRLSRTHQYWKKDIEKHGGKVANS--------V----EGVTCLVVSPAERERGGSSK-IAEAMERG  251 (815)
T ss_pred             ccCCCcCCcEEEEeCCCCCCHHHHHHHHHHcCCEEccc--------c----ccceEEEEcCccccccCccH-HHHHHHcC
Confidence            34557999999988744  6999999999999998621        1    34578887543221100011 11111112


Q ss_pred             ccccchhcccccCCCCCCcccccCcchhccccccccCCccccccc
Q psy14410        128 LAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYFIG  172 (325)
Q Consensus       128 ldp~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y~pG  172 (325)
                      +                  -.|.-+|+.||+++++.++...|...
T Consensus       252 I------------------pIVsEd~L~d~i~~~k~~~~~~y~l~  278 (815)
T PLN03122        252 I------------------PVVREAWLIDSIEKQEAQPLEAYDVV  278 (815)
T ss_pred             C------------------cCccHHHHHHHHhcCCcccchhhhhc
Confidence            2                  25778999999999999988888654


No 13 
>PF08372 PRT_C:  Plant phosphoribosyltransferase C-terminal;  InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO). 
Probab=58.12  E-value=3.8  Score=36.71  Aligned_cols=70  Identities=23%  Similarity=0.330  Sum_probs=38.9

Q ss_pred             cCCCCcccccccCCCCCCcchhHHH--HHHHHHHHHHH----hhhhCCCCCceEEEecccChhHHHHHHHhcCcee
Q psy14410         13 PMGQEEEDAAEFDYFPTNSEADAEK--VEEFKREAEKV----RKLKRLFEGLKVFLNREVPREPLTLALRSFGAQV   82 (325)
Q Consensus        13 ~~~~~~e~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~LF~g~~FflsREvPre~LefiIrSfGG~V   82 (325)
                      ++...+|.++|+|.||+..+.+.-+  .+.++.-+.++    .......+.++=.++=+.|+...-|++-++++.+
T Consensus        34 ~~~~~deldEEfD~~ps~~~~~~lr~Rydrlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~av  109 (156)
T PF08372_consen   34 DSAHPDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAV  109 (156)
T ss_pred             ccCCcchhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHH
Confidence            4445567778999999876655433  33333322222    2222233333333355688888777777666553


No 14 
>KOG2043|consensus
Probab=44.97  E-value=23  Score=39.43  Aligned_cols=77  Identities=23%  Similarity=0.423  Sum_probs=53.2

Q ss_pred             ceEEEecccChhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhhhccccccchhccc
Q psy14410         58 LKVFLNREVPREPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQLAPVEKYFIG  137 (325)
Q Consensus        58 ~~FflsREvPre~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~~~~ldp~~~~~~~  137 (325)
                      ...-++++.-...+...++..||.+.            +++..+||.|+||=.-..++    ++++. .|          
T Consensus       660 ~~~lfs~~~~~~~~k~~~k~lg~s~~------------ss~~e~Th~i~~rirRT~k~----Leai~-~G----------  712 (896)
T KOG2043|consen  660 IEVLFSDKNDGKNYKLAKKFLGGSVA------------SSDSEATHFIADRIRRTLKF----LEAIS-SG----------  712 (896)
T ss_pred             eeeeeeeccCchhhhhHHhhccceee------------cccccceeeeehhhhccHHH----Hhhhc-cC----------
Confidence            55667778888889999999887663            34556799999972111111    22221 11          


Q ss_pred             ccCCCCCCcccccCcchhccccccccCCcccc
Q psy14410        138 VTLPPHLSSYYVQPQWVFDSINAKQLAPVEKY  169 (325)
Q Consensus       138 ~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y  169 (325)
                              .-.+-|+|+.+|+..|.++....|
T Consensus       713 --------~~ivT~~wL~s~~k~g~~~dek~y  736 (896)
T KOG2043|consen  713 --------KPLVTPQWLVSSLKSGEKLDEKPY  736 (896)
T ss_pred             --------CcccchHHHHHHhhccccccCccc
Confidence                    135779999999999999988666


No 15 
>KOG1929|consensus
Probab=27.40  E-value=71  Score=35.50  Aligned_cols=90  Identities=22%  Similarity=0.368  Sum_probs=61.1

Q ss_pred             hhhCCCCCceEEEec--ccChhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhhhcc
Q psy14410         50 KLKRLFEGLKVFLNR--EVPREPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQ  127 (325)
Q Consensus        50 ~~~~LF~g~~FflsR--EvPre~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~~~~  127 (325)
                      .+...|+|++|.++-  +--++-|.+.++-+|+.+.        .+|.-..   ||.+.-+ ....++.-+         
T Consensus       489 ~l~~~~e~~~~~~s~~~~~~~e~ln~~~~~~gas~~--------~~f~r~~---~~l~~~~-~k~s~~~~~---------  547 (811)
T KOG1929|consen  489 ALSQPFENLTISNSQSAEAEREKLNNLANDLGASNV--------KTFTRKS---TTLLTTS-AKGSKYEIA---------  547 (811)
T ss_pred             cccccccCceEEeeechHHHHHHHhHhhhhcccccc--------ceeeecc---cEEeccc-cccchhhhc---------
Confidence            456789999999876  6678889999999998863        3332222   7777665 222222222         


Q ss_pred             ccccchhcccccCCCCCCcccccCcchhccccccccCCccccccccc
Q psy14410        128 LAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYFIGVT  174 (325)
Q Consensus       128 ldp~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y~pG~~  174 (325)
                              +|-.+      ..++|-|++.|...++-...+-|..|..
T Consensus       548 --------~kw~i------p~vT~~wL~e~~rq~~~~~~e~~l~~~s  580 (811)
T KOG1929|consen  548 --------GKWSI------PIVTPDWLYECVRQNKGERNEGFLNGNS  580 (811)
T ss_pred             --------cccCC------CccChhHHHhhccccCcccceeeccccc
Confidence                    12222      2589999999998888888888877754


No 16 
>PF14538 Raptor_N:  Raptor N-terminal CASPase like domain
Probab=26.33  E-value=21  Score=31.55  Aligned_cols=13  Identities=38%  Similarity=0.603  Sum_probs=11.2

Q ss_pred             eeeeecccCcccc
Q psy14410        257 WVFDSINAKQLAP  269 (325)
Q Consensus       257 wvfD~iN~~~llp  269 (325)
                      +||||=|||.||+
T Consensus       139 ~V~DC~~AG~il~  151 (154)
T PF14538_consen  139 YVFDCSNAGSILN  151 (154)
T ss_pred             EEEECCcHHHHHH
Confidence            5899999999876


No 17 
>PF07833 Cu_amine_oxidN1:  Copper amine oxidase N-terminal domain;  InterPro: IPR012854 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2   Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ].  This entry represents a domain found at the N-terminal of certain copper amine oxidases, as well as in related proteins such as cell wall hydrolase and N-acetylmuramoyl-L-alanine amidase. This domain consists of a five-stranded antiparallel beta-sheet twisted around an alpha helix [, ]. ; PDB: 1SPU_A 2WGQ_A 2WO0_A 1JRQ_A 1QAF_B 1D6U_B 1QAL_A 2WOF_A 1OAC_B 1QAK_A ....
Probab=26.31  E-value=35  Score=25.43  Aligned_cols=17  Identities=47%  Similarity=0.993  Sum_probs=14.3

Q ss_pred             HHHHHHHhcCceeecCc
Q psy14410         70 PLTLALRSFGAQVSWDK   86 (325)
Q Consensus        70 ~LefiIrSfGG~V~wd~   86 (325)
                      ||..+.+++|++|.||.
T Consensus         8 Pl~~i~~~lg~~v~~d~   24 (93)
T PF07833_consen    8 PLRFIAEALGAKVSWDN   24 (93)
T ss_dssp             EHHHHHHHHT-EEEEET
T ss_pred             EHHHHHHHcCCEEEEEc
Confidence            67889999999999976


No 18 
>PF12738 PTCB-BRCT:  twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=25.01  E-value=92  Score=22.26  Aligned_cols=32  Identities=28%  Similarity=0.418  Sum_probs=22.2

Q ss_pred             hhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCC
Q psy14410         68 REPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPS  110 (325)
Q Consensus        68 re~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~  110 (325)
                      |+.|.-+++..||++.=+-           ....||-|..++.
T Consensus        13 ~~~l~~~i~~~Gg~~~~~l-----------t~~~THLI~~~~~   44 (63)
T PF12738_consen   13 RSQLRKLIEALGGKYSKDL-----------TKKTTHLICSSPE   44 (63)
T ss_dssp             CCHHHHHHHCTT-EEESSS-----------STT-SEEEEES--
T ss_pred             HHHHHHHHHHCCCEEeccc-----------cCCceEEEEeCCC
Confidence            8899999999999986321           2467999997654


No 19 
>KOG3548|consensus
Probab=24.81  E-value=30  Score=39.40  Aligned_cols=33  Identities=18%  Similarity=0.263  Sum_probs=24.2

Q ss_pred             hhCCCCCceEEEeccc-ChhHHHHHHHhcCceee
Q psy14410         51 LKRLFEGLKVFLNREV-PREPLTLALRSFGAQVS   83 (325)
Q Consensus        51 ~~~LF~g~~FflsREv-Pre~LefiIrSfGG~V~   83 (325)
                      -++||-||.|.|..-+ .++.+.-.+.+.||.|.
T Consensus       922 gkniFd~cvF~lTsa~~sd~~~r~s~e~~gg~vl  955 (1176)
T KOG3548|consen  922 GKNIFDGCVFMLTSANRSDSASRPSMEKHGGLVL  955 (1176)
T ss_pred             CcchhcceeEEEeccccchhhhhhhhhccCChhh
Confidence            4799999999998733 44555556667888875


No 20 
>PF03474 DMA:  DMRTA motif;  InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=24.25  E-value=46  Score=24.14  Aligned_cols=26  Identities=31%  Similarity=0.390  Sum_probs=19.7

Q ss_pred             hhhCCCCCceEEEecccChhHHHHHHHhcCceee
Q psy14410         50 KLKRLFEGLKVFLNREVPREPLTLALRSFGAQVS   83 (325)
Q Consensus        50 ~~~~LF~g~~FflsREvPre~LefiIrSfGG~V~   83 (325)
                      -+.++|-+.        .|..|+.+++.|||.|.
T Consensus         7 iL~rvFP~~--------kr~~Le~iL~~C~GDvv   32 (39)
T PF03474_consen    7 ILTRVFPHQ--------KRSVLELILQRCNGDVV   32 (39)
T ss_pred             HHHHHCCCC--------ChHHHHHHHHHcCCcHH
Confidence            355566543        48999999999999863


No 21 
>KOG3936|consensus
Probab=23.37  E-value=84  Score=26.77  Aligned_cols=24  Identities=25%  Similarity=0.479  Sum_probs=21.4

Q ss_pred             CCceEEEecccChhHHHHHHHhcC
Q psy14410         56 EGLKVFLNREVPREPLTLALRSFG   79 (325)
Q Consensus        56 ~g~~FflsREvPre~LefiIrSfG   79 (325)
                      +.|.||-|+.||.+.+.-+||..|
T Consensus        76 RScR~fSn~dVPleVI~NlikTAG   99 (100)
T KOG3936|consen   76 RSCRFFSNEDVPLEVIDNLIKTAG   99 (100)
T ss_pred             hhhhhhccccCcHHHHHHHHHhcc
Confidence            457899999999999999999876


No 22 
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=22.92  E-value=1.2e+02  Score=34.49  Aligned_cols=90  Identities=12%  Similarity=0.181  Sum_probs=56.8

Q ss_pred             hhhCCCCCceEEEecccCh--hHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhhhcc
Q psy14410         50 KLKRLFEGLKVFLNREVPR--EPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQ  127 (325)
Q Consensus        50 ~~~~LF~g~~FflsREvPr--e~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~~~~  127 (325)
                      ..++.|.|++|.++-..++  ..+.-.|.+.||+++=.-           ...+||.|.. ....+. -.++-++ -+.+
T Consensus       389 ~~~~~l~~~~i~i~G~~~~~~~~~k~~Ie~~GG~~s~~v-----------~~~~t~l~tt-~e~~k~-~~kv~qA-k~~~  454 (981)
T PLN03123        389 SESEFLGDLKVSIVGASKEKVTEWKAKIEEAGGVFHATV-----------KKDTNCLVVC-GELDDE-DAEMRKA-RRMK  454 (981)
T ss_pred             ccCCCcCCeEEEEecCCCCcHHHHHHHHHhcCCEEeeec-----------cCCceEEEcc-HHhhhc-chHHHHH-HhcC
Confidence            3457799999988887665  566778999999987321           2345886655 343222 1221111 1111


Q ss_pred             ccccchhcccccCCCCCCcccccCcchhccccccccCCcccccc
Q psy14410        128 LAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYFI  171 (325)
Q Consensus       128 ldp~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y~p  171 (325)
                      +                  -.|.-.|+.||+.+++-+|...|..
T Consensus       455 i------------------pIVsedwL~ds~~~~~~~p~~~y~~  480 (981)
T PLN03123        455 I------------------PIVREDYLVDCFKKKKKLPFDKYKL  480 (981)
T ss_pred             C------------------CcccHHHHHHHHhccccCcchhhhh
Confidence            2                  2567789999999998888776633


No 23 
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=22.62  E-value=1.1e+02  Score=29.54  Aligned_cols=32  Identities=31%  Similarity=0.427  Sum_probs=28.3

Q ss_pred             hCCCCCceEEEeccc--ChhHHHHHHHhcCceee
Q psy14410         52 KRLFEGLKVFLNREV--PREPLTLALRSFGAQVS   83 (325)
Q Consensus        52 ~~LF~g~~FflsREv--Pre~LefiIrSfGG~V~   83 (325)
                      ..||.|.+|.+.-++  +|+.++-.|++.||+|+
T Consensus       230 ~~l~~g~~~v~TG~l~~~R~e~~~~~~~~G~~v~  263 (313)
T PRK06063        230 RPLVQGMRVALSAEVSRTHEELVERILHAGLAYS  263 (313)
T ss_pred             CcccCCCEEEEecCCCCCHHHHHHHHHHcCCEec
Confidence            458999999998644  99999999999999997


No 24 
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=21.79  E-value=3.3e+02  Score=27.39  Aligned_cols=61  Identities=28%  Similarity=0.300  Sum_probs=31.6

Q ss_pred             ceeEeeccccccCCC-CcccccccCCCCCCcchhHHHHHHHHHHHHHHhhhhCCCCCceEEEec
Q psy14410          2 SIAVTASGMSVPMGQ-EEEDAAEFDYFPTNSEADAEKVEEFKREAEKVRKLKRLFEGLKVFLNR   64 (325)
Q Consensus         2 ~~~~~~~~~~~~~~~-~~e~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~LF~g~~FflsR   64 (325)
                      ||.+|.+-++--+.- +-.+..+-|.|=.|++.+....+.+++-.+..|+....  .++|+|-+
T Consensus        34 SiS~t~~df~t~t~~~~~~~~~~~D~~~lNG~~~~~~~~k~~~~ld~~R~~~~~--~~~~~i~s   95 (329)
T COG3407          34 SISVTLEDFSTTTTAEELTENDEEDTFILNGELSEDENEKARRVLDRFRKEYGI--SFKVKIVS   95 (329)
T ss_pred             eeEEEeccccceeEEEEecCCCCccEEEECCccCchHHHHHHHHHHHHHHhhcc--cceEEEEE
Confidence            566665443332222 12233344555556665544445556655555554444  77788776


Done!