Query psy14410
Match_columns 325
No_of_seqs 211 out of 347
Neff 2.8
Searched_HMMs 29240
Date Fri Aug 16 19:10:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14410.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14410hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ep8_A Pescadillo homolog 1; A 100.0 1.3E-32 4.4E-37 219.8 7.3 94 49-170 7-100 (100)
2 1z56_C DNA ligase IV; DNA repa 99.9 7.3E-24 2.5E-28 186.0 -0.2 101 51-182 2-114 (264)
3 3pc7_A DNA ligase 3; DNA repai 99.7 5E-18 1.7E-22 134.7 2.7 76 49-166 11-87 (88)
4 3pc6_A DNA repair protein XRCC 99.7 2.9E-17 9.8E-22 132.7 5.9 87 51-170 4-93 (104)
5 1wf6_A Similar to S.pombe -RAD 99.6 8.2E-16 2.8E-20 125.2 5.3 48 51-109 37-86 (132)
6 2ebw_A DNA repair protein REV1 99.5 7.1E-15 2.4E-19 112.0 6.7 85 50-170 8-94 (97)
7 4id3_A DNA repair protein REV1 99.4 1.7E-13 6E-18 102.1 5.6 86 50-170 3-90 (92)
8 3ii6_X DNA ligase 4; XRCC4, NH 99.4 1.8E-13 6.3E-18 122.6 5.1 85 49-169 5-93 (263)
9 2nte_A BARD-1, BRCA1-associate 99.3 2.7E-12 9.1E-17 109.3 7.0 94 50-167 100-209 (210)
10 3u3z_A Microcephalin; DNA repa 99.3 2E-12 6.7E-17 111.7 4.4 180 57-276 10-198 (199)
11 1z56_C DNA ligase IV; DNA repa 99.2 2.4E-12 8.1E-17 113.0 2.5 47 51-109 157-206 (264)
12 3u3z_A Microcephalin; DNA repa 99.2 1.1E-11 3.8E-16 107.0 5.6 81 51-173 116-199 (199)
13 2ep8_A Pescadillo homolog 1; A 99.2 1.4E-12 4.8E-17 104.1 -0.1 36 239-274 64-100 (100)
14 2nte_A BARD-1, BRCA1-associate 99.1 9.2E-11 3.1E-15 99.8 5.1 82 57-172 2-87 (210)
15 3ii6_X DNA ligase 4; XRCC4, NH 99.0 5.4E-10 1.8E-14 100.2 6.2 90 51-170 161-262 (263)
16 3l3e_A DNA topoisomerase 2-bin 98.9 1.7E-09 5.9E-14 84.4 6.4 92 48-171 9-102 (107)
17 1t15_A Breast cancer type 1 su 98.9 1E-09 3.5E-14 91.8 4.9 87 57-172 4-92 (214)
18 2d8m_A DNA-repair protein XRCC 98.8 1.8E-08 6.1E-13 81.7 7.8 51 49-110 17-69 (129)
19 1t15_A Breast cancer type 1 su 98.7 1.2E-08 4.2E-13 85.3 6.4 97 50-173 111-212 (214)
20 2jw5_A DNA polymerase lambda; 98.7 5.6E-09 1.9E-13 83.4 2.0 90 51-169 8-101 (106)
21 2cou_A ECT2 protein; BRCT doma 98.5 3.1E-07 1.1E-11 72.8 6.7 91 52-177 10-102 (109)
22 3pc7_A DNA ligase 3; DNA repai 98.2 8E-08 2.7E-12 76.3 -1.4 26 246-271 63-88 (88)
23 1l0b_A BRCA1; TANDEM-BRCT, thr 98.2 3.5E-07 1.2E-11 77.9 2.3 92 53-173 3-96 (229)
24 2vxb_A DNA repair protein RHP9 98.2 9.8E-07 3.4E-11 78.5 4.5 96 53-171 1-116 (241)
25 3pa6_A Microcephalin; BRCT dom 98.2 2E-06 6.7E-11 69.2 5.6 85 52-171 5-95 (107)
26 1kzy_C Tumor suppressor P53-bi 98.1 2.4E-06 8.4E-11 76.5 5.3 93 51-171 12-135 (259)
27 3pc6_A DNA repair protein XRCC 98.0 3.3E-07 1.1E-11 74.0 -1.4 31 246-276 65-95 (104)
28 1wf6_A Similar to S.pombe -RAD 97.9 1.2E-06 4E-11 71.2 -1.0 31 249-284 100-130 (132)
29 1l0b_A BRCA1; TANDEM-BRCT, thr 97.8 2.2E-05 7.6E-10 66.8 6.0 95 52-172 115-213 (229)
30 2ebw_A DNA repair protein REV1 97.8 1.7E-06 5.7E-11 65.7 -1.3 27 249-275 69-95 (97)
31 3l46_A Protein ECT2; alternati 97.8 2.5E-05 8.6E-10 63.5 5.3 85 52-171 19-105 (112)
32 2coe_A Deoxynucleotidyltransfe 97.8 2.3E-05 8E-10 65.0 4.8 89 53-169 19-111 (120)
33 3olc_X DNA topoisomerase 2-bin 97.6 5.1E-05 1.7E-09 69.5 5.4 88 51-172 196-285 (298)
34 3al2_A DNA topoisomerase 2-bin 97.5 0.00011 3.7E-09 65.3 5.9 93 52-169 133-226 (235)
35 2etx_A Mediator of DNA damage 97.3 0.00048 1.6E-08 59.1 7.6 86 52-170 113-200 (209)
36 4id3_A DNA repair protein REV1 97.3 2E-05 6.9E-10 58.3 -0.9 27 249-275 65-91 (92)
37 3olc_X DNA topoisomerase 2-bin 97.3 0.00023 7.7E-09 65.2 5.3 122 52-208 103-286 (298)
38 1kzy_C Tumor suppressor P53-bi 97.3 0.00014 4.7E-09 65.2 3.8 93 52-168 153-248 (259)
39 3ef0_A RNA polymerase II subun 97.2 0.00061 2.1E-08 64.9 6.7 85 52-170 280-370 (372)
40 2etx_A Mediator of DNA damage 97.0 0.00072 2.5E-08 58.0 5.3 85 52-172 7-91 (209)
41 3ef1_A RNA polymerase II subun 96.8 0.0015 5E-08 64.2 5.9 86 51-170 349-440 (442)
42 3al2_A DNA topoisomerase 2-bin 96.6 0.0019 6.7E-08 57.2 5.2 86 56-173 8-95 (235)
43 2vxb_A DNA repair protein RHP9 96.5 0.0043 1.5E-07 55.1 6.6 81 49-166 146-241 (241)
44 3sqd_A PAX-interacting protein 96.3 0.0018 6.3E-08 56.7 3.0 82 55-171 14-97 (219)
45 2l42_A DNA-binding protein RAP 95.9 0.0068 2.3E-07 50.3 4.1 78 52-170 9-93 (106)
46 3l41_A BRCT-containing protein 95.3 0.0061 2.1E-07 53.9 1.9 65 72-171 22-86 (220)
47 2d8m_A DNA-repair protein XRCC 94.5 0.0056 1.9E-07 49.4 -0.4 32 248-279 79-110 (129)
48 3l41_A BRCT-containing protein 94.0 0.05 1.7E-06 48.0 4.5 33 51-83 110-146 (220)
49 3l3e_A DNA topoisomerase 2-bin 93.7 0.0069 2.4E-07 46.9 -1.4 27 249-275 76-102 (107)
50 2dun_A POL MU, DNA polymerase 93.0 0.036 1.2E-06 47.2 1.9 92 52-169 8-104 (133)
51 2cou_A ECT2 protein; BRCT doma 92.4 0.023 7.9E-07 44.7 -0.1 31 251-281 72-102 (109)
52 3sqd_A PAX-interacting protein 91.9 0.14 4.7E-06 44.8 4.2 33 51-83 119-153 (219)
53 2jw5_A DNA polymerase lambda; 87.7 0.059 2E-06 42.7 -1.4 23 251-273 79-101 (106)
54 3pa6_A Microcephalin; BRCT dom 82.8 0.14 4.9E-06 40.8 -1.3 26 251-276 71-96 (107)
55 3l46_A Protein ECT2; alternati 79.4 0.24 8.3E-06 40.0 -1.1 28 251-278 81-108 (112)
56 2k2w_A Recombination and DNA r 57.2 9.4 0.00032 32.0 3.8 35 50-84 9-44 (118)
57 2k6g_A Replication factor C su 49.7 20 0.00068 28.6 4.5 31 53-83 31-64 (109)
58 2ebu_A Replication factor C su 47.0 20 0.00068 29.0 4.1 31 53-83 21-54 (112)
59 1l7b_A DNA ligase; BRCT, autos 42.8 15 0.00051 28.5 2.7 33 52-84 5-39 (92)
60 2cok_A Poly [ADP-ribose] polym 41.5 28 0.00097 28.1 4.2 32 52-83 8-41 (113)
61 3qbz_A DDK kinase regulatory s 40.2 32 0.0011 30.2 4.5 56 48-114 52-122 (160)
62 3oq4_A DBF4, protein DNA52; DD 36.0 40 0.0014 28.8 4.4 34 69-113 33-66 (134)
63 3ef0_A RNA polymerase II subun 30.2 7.6 0.00026 36.9 -1.0 25 251-275 347-371 (372)
64 3oq0_A DBF4, protein DNA52; DD 27.3 59 0.002 28.2 4.1 34 69-113 50-83 (151)
65 3ef1_A RNA polymerase II subun 25.1 9.6 0.00033 37.5 -1.4 25 251-275 417-441 (442)
66 2coe_A Deoxynucleotidyltransfe 21.3 16 0.00054 30.1 -0.6 24 250-273 88-111 (120)
No 1
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.97 E-value=1.3e-32 Score=219.80 Aligned_cols=94 Identities=62% Similarity=1.054 Sum_probs=83.2
Q ss_pred hhhhCCCCCceEEEecccChhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhhhccc
Q psy14410 49 RKLKRLFEGLKVFLNREVPREPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQL 128 (325)
Q Consensus 49 ~~~~~LF~g~~FflsREvPre~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~~~~l 128 (325)
.+.++||+|++|||+||+||+.|+|+||+|||+|+|+..++.|+++.++|++|||+|+|||...++.
T Consensus 7 ~~~~~LF~g~~F~i~~e~p~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~drp~~~~~~------------- 73 (100)
T 2ep8_A 7 GKHKKLFEGLKFFLNREVPREALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPGQQTSV------------- 73 (100)
T ss_dssp SCSCCTTSSCEEECCSSSCHHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECSCTTTSCCB-------------
T ss_pred CchHHHcCCcEEEEecCCCHHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEecccchhhhc-------------
Confidence 4568999999999999999999999999999999999999999999999999999999999764322
Q ss_pred cccchhcccccCCCCCCcccccCcchhccccccccCCccccc
Q psy14410 129 APVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYF 170 (325)
Q Consensus 129 dp~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y~ 170 (325)
..|.||||||||||+|+++|||.+.|+
T Consensus 74 ---------------~~r~~VqPqWV~Dcin~~~lLp~~~Y~ 100 (100)
T 2ep8_A 74 ---------------IGRCYVQPQWVFDSVNARLLLPVAEYF 100 (100)
T ss_dssp ---------------TTBEEECTHHHHHHHHHTSCCCTTTCC
T ss_pred ---------------CCCeEEcchHHHHHHhcCCcCChhhcC
Confidence 235688999999999999988888774
No 2
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=99.87 E-value=7.3e-24 Score=186.04 Aligned_cols=101 Identities=15% Similarity=0.254 Sum_probs=73.5
Q ss_pred hhCCCCCceEEEec---------ccChhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhh
Q psy14410 51 LKRLFEGLKVFLNR---------EVPREPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFD 121 (325)
Q Consensus 51 ~~~LF~g~~FflsR---------EvPre~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~ 121 (325)
.++||+|++|||.+ +++|+.|+++|++|||++.|+.. ..++... .||+|.||+....+.
T Consensus 2 ~s~lF~g~~f~v~~~~~~p~~~~~~~~~~L~~li~~~GG~~~~~~~---~~t~~~~---~~~iI~~~~t~k~~~------ 69 (264)
T 1z56_C 2 ISNIFAGLLFYVLSDYVTEDTGIRITRAELEKTIVEHGGKLIYNVI---LKRHSIG---DVRLISCKTTTECKA------ 69 (264)
T ss_dssp -CCCCCTTCCCCSEEEECCCCCSSSSCCCTHHHHHHHHTTSCCCSS---CCCCCSS---CCEEEECSCCGGGGG------
T ss_pred ccccCCCcEEEEEcCCCCccccccCCHHHHHHHHHHcCCEEeecCC---CCccCcc---ceEEEecCCcHHHHH------
Confidence 47899999999965 46999999999999999988532 2333221 399999998653211
Q ss_pred hhhhccccccchhcccccCCCCCCcccccCcchhccccccccCCcccc---cccccCCCCCCce
Q psy14410 122 SINAKQLAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKY---FIGVTLPPHMSSY 182 (325)
Q Consensus 122 s~~~~~ldp~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y---~pG~~lPpHlsp~ 182 (325)
+...| +.+||||||+||+|+++++|.+.| ..+..+++|+++.
T Consensus 70 -~~~~~------------------~~vV~p~Wv~dci~~~~llp~~~y~~~~~~~~~~~~~~~~ 114 (264)
T 1z56_C 70 -LIDRG------------------YDILHPNWVLDCIAYKRLILIEPNYCFNVSQKMRAVAEKR 114 (264)
T ss_dssp -GTTTT------------------CCCBCSSTTHHHHSSCSCCCCCSCBSCCCGGGTHHHHGGG
T ss_pred -HHhCC------------------CCEEechHHHHHhhcCCCCCCChHHhhcCCHHHHHHHHHh
Confidence 11111 348999999999999999999887 3455566666553
No 3
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=99.69 E-value=5e-18 Score=134.74 Aligned_cols=76 Identities=22% Similarity=0.419 Sum_probs=64.5
Q ss_pred hhhhCCCCCceEEEecccChh-HHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhhhcc
Q psy14410 49 RKLKRLFEGLKVFLNREVPRE-PLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQ 127 (325)
Q Consensus 49 ~~~~~LF~g~~FflsREvPre-~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~~~~ 127 (325)
+.+-+||+|++|||.+++|+. .|++.|.+|||+|.|+. +.+++||+|.||+. .
T Consensus 11 ~~LpdiFsg~~~~l~~~v~~~~~l~RyiiAfgG~v~~~~----------~~~~vTHvI~~~~~----~------------ 64 (88)
T 3pc7_A 11 KVLLDIFTGVRLYLPPSTPDFSRLRRYFVAFDGDLVQEF----------DMTSATHVLGSRDK----N------------ 64 (88)
T ss_dssp CCCCCCSTTCEECCCTTSTTHHHHHHHHHHTTCEECCGG----------GGGGCSEEESCCTT----C------------
T ss_pred CcCChhhcCeEEEccCCcCchhhheeeeeecCCEEeccc----------CCCcCeEEecCCCc----C------------
Confidence 568899999999999999999 99999999999998842 33589999999962 1
Q ss_pred ccccchhcccccCCCCCCcccccCcchhccccccccCCc
Q psy14410 128 LAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPV 166 (325)
Q Consensus 128 ldp~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~ 166 (325)
.++.|||||||+||||+++|+|.
T Consensus 65 ----------------~~~~~V~p~WI~dcI~k~~Ll~~ 87 (88)
T 3pc7_A 65 ----------------PAAQQVSPEWIWACIRKRRLVAP 87 (88)
T ss_dssp ----------------TTSEEECHHHHHHHHHHTSCCSC
T ss_pred ----------------CCCcEEchHHHHHHHhCCcccCC
Confidence 23568999999999999999874
No 4
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=99.68 E-value=2.9e-17 Score=132.71 Aligned_cols=87 Identities=24% Similarity=0.410 Sum_probs=67.6
Q ss_pred hhCCCCCceEEEecccC---hhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhhhcc
Q psy14410 51 LKRLFEGLKVFLNREVP---REPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQ 127 (325)
Q Consensus 51 ~~~LF~g~~FflsREvP---re~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~~~~ 127 (325)
+-.+|+|++|||++++| |..|++.|.+|||.|.|.. ++++||+|+|||.-. .++...++
T Consensus 4 Lpd~F~g~~f~l~~~~p~~~r~~l~ryiia~GG~v~~~~-----------~~~vTHvIt~~~~d~------~~~~a~~~- 65 (104)
T 3pc6_A 4 LPDFFEGKHFFLYGEFPGDERRRLIRYVTAFNGELEDYM-----------NERVQFVITAQEWDP------NFEEALME- 65 (104)
T ss_dssp CCCTTTTCEEEEESCCSTTHHHHHHHHHHHTTCEECSSC-----------CTTCCEEEESSCCCH------HHHHHHTT-
T ss_pred cchhhCCeEEEEcCCCcHHHHHHHHHHHHHcCCEEEccc-----------CCCceEEEeCCCCCh------hHHHHhhh-
Confidence 56799999999999999 8889999999999998732 467999999998321 12211111
Q ss_pred ccccchhcccccCCCCCCcccccCcchhccccccccCCccccc
Q psy14410 128 LAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYF 170 (325)
Q Consensus 128 ldp~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y~ 170 (325)
.-+..||||+||+||+|+++++|.+.|+
T Consensus 66 ---------------~p~~~~V~P~WI~~Ci~~~klvp~~~y~ 93 (104)
T 3pc6_A 66 ---------------NPSLAFVRPRWIYSCNEKQKLLPHQLYG 93 (104)
T ss_dssp ---------------CTTCEEECHHHHHHHHHHTSCCCGGGGB
T ss_pred ---------------CCCCeEEccHHHHHHHhcCccCCcccce
Confidence 1245789999999999999999988874
No 5
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=99.59 E-value=8.2e-16 Score=125.25 Aligned_cols=48 Identities=23% Similarity=0.258 Sum_probs=42.2
Q ss_pred hhCCCCCceEEEe--cccChhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCC
Q psy14410 51 LKRLFEGLKVFLN--REVPREPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRP 109 (325)
Q Consensus 51 ~~~LF~g~~Ffls--REvPre~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP 109 (325)
.+.||+|++|||+ ++.+++.|..+|+++||++..+ -++++||.|++++
T Consensus 37 ~~~lF~g~~i~i~G~~~~~~~~L~~~i~~~Gg~v~~~-----------l~~~vTHvI~~~~ 86 (132)
T 1wf6_A 37 PEDLLDGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQ-----------LNEDVTHVIVGDY 86 (132)
T ss_dssp CTTTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEESS-----------CCSSCCEEEESSC
T ss_pred cccccCCEEEEEECCChHHHHHHHHHHHHCCCEEeCc-----------CCCCCeEEEECCc
Confidence 3589999999999 8899999999999999999632 2588999999986
No 6
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=99.54 E-value=7.1e-15 Score=112.05 Aligned_cols=85 Identities=21% Similarity=0.352 Sum_probs=65.4
Q ss_pred hhhCCCCCceEEEe--cccChhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhhhcc
Q psy14410 50 KLKRLFEGLKVFLN--REVPREPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQ 127 (325)
Q Consensus 50 ~~~~LF~g~~Ffls--REvPre~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~~~~ 127 (325)
..++||+|++|||+ ++.+++.|+.+|+++||++.++- ++..+||.|++++.-.+ + ..+
T Consensus 8 ~~~~lF~g~~~~isg~~~~~~~~L~~~i~~~GG~~~~~~----------~~~~~THlI~~~~~~~k-~-----~~~---- 67 (97)
T 2ebw_A 8 TSSTIFSGVAIYVNGYTDPSAEELRKLMMLHGGQYHVYY----------SRSKTTHIIATNLPNAK-I-----KEL---- 67 (97)
T ss_dssp CCCCTTTTCEEEECSSCSSCHHHHHHHHHHTTCEECSSC----------CSSSCCEEECSCCCTTH-H-----HHT----
T ss_pred CCCCCCCCeEEEEeCCCcccHHHHHHHHHHcCCEEeeec----------CCCCCEEEEecCCChHH-H-----HHh----
Confidence 35689999999999 56899999999999999986531 23678999999975322 1 111
Q ss_pred ccccchhcccccCCCCCCcccccCcchhccccccccCCccccc
Q psy14410 128 LAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYF 170 (325)
Q Consensus 128 ldp~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y~ 170 (325)
. ...+|+|||++||+++++++|.+.|.
T Consensus 68 --------~--------~~~iV~p~Wl~dci~~~~~l~~~~Y~ 94 (97)
T 2ebw_A 68 --------K--------GEKVIRPEWIVESIKAGRLLSYIPYQ 94 (97)
T ss_dssp --------S--------SSCCBCTHHHHHHHHHTSCCCSGGGB
T ss_pred --------c--------CCCEeChHHHHHHHHcCCccCchHcE
Confidence 0 23588999999999999999888774
No 7
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=99.41 E-value=1.7e-13 Score=102.09 Aligned_cols=86 Identities=20% Similarity=0.390 Sum_probs=63.1
Q ss_pred hhhCCCCCceEEEec--ccChhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhhhcc
Q psy14410 50 KLKRLFEGLKVFLNR--EVPREPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQ 127 (325)
Q Consensus 50 ~~~~LF~g~~FflsR--EvPre~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~~~~ 127 (325)
..+++|+|++||++. ..+|+.|+.+|+++||++..+- ..+..+||.|++++...+. ....
T Consensus 3 ~~~~~f~g~~~~i~g~~~~~~~~l~~~i~~~GG~~~~~~---------~~~~~~THlI~~~~~~~K~--------~~~~- 64 (92)
T 4id3_A 3 QSSKIFKNCVIYINGYTKPGRLQLHEMIVLHGGKFLHYL---------SSKKTVTHIVASNLPLKKR--------IEFA- 64 (92)
T ss_dssp ---CTTTTCEEEECSCCSSCHHHHHHHHHHTTCEEESSC---------CCTTTCCEEECSCCCHHHH--------HHTT-
T ss_pred ccccccCCEEEEEeCCCCcCHHHHHHHHHHCCCEEEEEe---------cCCCceEEEEecCCCHHHH--------HHcC-
Confidence 357899999999995 6789999999999999998542 1236899999999753210 0001
Q ss_pred ccccchhcccccCCCCCCcccccCcchhccccccccCCccccc
Q psy14410 128 LAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYF 170 (325)
Q Consensus 128 ldp~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y~ 170 (325)
...+|+|+|++||+++++++|.+.|.
T Consensus 65 -----------------~~~iV~~~Wi~dci~~~~~l~e~~Y~ 90 (92)
T 4id3_A 65 -----------------NYKVVSPDWIVDSVKEARLLPWQNYS 90 (92)
T ss_dssp -----------------TSCEECTHHHHHHHHHTSCCCGGGGB
T ss_pred -----------------CCCEEcccHHHHHHHcCCcCChhhcc
Confidence 23478888888888888888887774
No 8
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=99.39 E-value=1.8e-13 Score=122.57 Aligned_cols=85 Identities=19% Similarity=0.384 Sum_probs=64.6
Q ss_pred hhhhCCCCCceEEEec---ccChhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhhh
Q psy14410 49 RKLKRLFEGLKVFLNR---EVPREPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINA 125 (325)
Q Consensus 49 ~~~~~LF~g~~FflsR---EvPre~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~~ 125 (325)
+..++||+|+.|||.+ +.+++.|+.+|+++||++.|+. .+.+||.|.||+.. + +.++.+
T Consensus 5 ~~~s~lF~G~~f~V~sg~~~~~k~~L~~lI~~~GG~v~~n~-----------~~~t~~iIa~~~~~------k-~~~~~~ 66 (263)
T 3ii6_X 5 SKISNIFEDVEFCVMSGTDSQPKPDLENRIAEFGGYIVQNP-----------GPDTYCVIAGSENI------R-VKNIIL 66 (263)
T ss_dssp -CCCCTTTTCEEEECCCC--CCHHHHHHHHHHTTCEECSSC-----------CTTEEEEECSSCCH------H-HHHHHH
T ss_pred CcCcccCCCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecC-----------CCCEEEEEeCCCCH------H-HHHHHh
Confidence 3468999999999975 8999999999999999999864 13456679998752 1 223333
Q ss_pred cc-ccccchhcccccCCCCCCcccccCcchhccccccccCCcccc
Q psy14410 126 KQ-LAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKY 169 (325)
Q Consensus 126 ~~-ldp~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y 169 (325)
.| ++ +|+||||+||+++++++|.+.|
T Consensus 67 ~g~~~------------------IV~p~Wv~Dci~~~~llp~~p~ 93 (263)
T 3ii6_X 67 SNKHD------------------VVKPAWLLECFKTKSFVPWQPR 93 (263)
T ss_dssp SCSCC------------------EECHHHHHHHHHHTSCCCCCGG
T ss_pred cCCCC------------------EeehHHHHHHHhcCCcCCCCHH
Confidence 32 33 9999999999999999997543
No 9
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=99.30 E-value=2.7e-12 Score=109.26 Aligned_cols=94 Identities=18% Similarity=0.297 Sum_probs=65.9
Q ss_pred hhhCCCCCceEEEec---ccChhHHHHHHHhcCceeec-CccccCC-------CCC----CCCCCCCcEEEecCCCCCcc
Q psy14410 50 KLKRLFEGLKVFLNR---EVPREPLTLALRSFGAQVSW-DKTLFVG-------ATF----PEDDESITHQIVDRPSIGKQ 114 (325)
Q Consensus 50 ~~~~LF~g~~FflsR---EvPre~LefiIrSfGG~V~w-d~~~~~g-------a~~----~e~d~~ITHqIvDRP~~~~~ 114 (325)
...+||+|++||+.. +.+++.|+.+|+++||+|.. ....... .+| +.++..+||+|++||....
T Consensus 100 ~~~~lF~g~~~~l~~~~~~~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~~t~~iv~~~~~~~- 178 (210)
T 2nte_A 100 LLPKLFDGCYFYLWGTFKHHPKDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSDQRFCTQYIIYEDLCNY- 178 (210)
T ss_dssp TCCCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEEESSCCCGGGCGGGSSCCCCTTSCTTCGGGTCCEEEEECSCSSC-
T ss_pred ccccccCceEEEEeccCCCCCHHHHHHHHHHCCCEEEecCCCCccccccccceeeeccCCCcccccceEEEEecccccc-
Confidence 357899999999987 57899999999999999863 4322111 111 3445789999999986321
Q ss_pred cccchhhhhhhccccccchhcccccCCCCCCc-ccccCcchhccccccccCCcc
Q psy14410 115 YISRVFDSINAKQLAPVEKYFIGVTLPPHLSS-YYVQPQWVFDSINAKQLAPVE 167 (325)
Q Consensus 115 ~~~r~~~s~~~~~ldp~~~~~~~~~~~~~~~~-~yvqPQWv~Dcin~~~llp~~ 167 (325)
...+ +.. .+ .+|+|||++|||++++|+|.+
T Consensus 179 ~~~~----~~~-------------------~~v~~V~~~Wl~dcI~~~~llp~~ 209 (210)
T 2nte_A 179 HPER----VRQ-------------------GKVWKAPSSWFIDCVMSFELLPLD 209 (210)
T ss_dssp CCSC----SEE-------------------TTEEEEEHHHHHHHHHHTSCCCSC
T ss_pred CHHH----Hhc-------------------cCcccccHHHHHHHHHhCeeccCC
Confidence 1111 000 11 378999999999999999864
No 10
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=99.27 E-value=2e-12 Score=111.69 Aligned_cols=180 Identities=13% Similarity=0.232 Sum_probs=93.1
Q ss_pred CceEEEecccCh---hHHHHHHHhcCce-eecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhhhccccccc
Q psy14410 57 GLKVFLNREVPR---EPLTLALRSFGAQ-VSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQLAPVE 132 (325)
Q Consensus 57 g~~FflsREvPr---e~LefiIrSfGG~-V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~~~~ldp~~ 132 (325)
....++.+-.+. +.|.-+++++||. +. + +-+++.||.|++.+.-..+++ .+ .+.|
T Consensus 10 ~~~~~~~sgl~~~~~~~l~~~i~~lgG~~~~-~----------~~~~~~THlv~~~~~rT~K~l----~a-i~~g----- 68 (199)
T 3u3z_A 10 PTRTLVMTSMPSEKQNVVIQVVDKLKGFSIA-P----------DVCETTTHVLSGKPLRTLNVL----LG-IARG----- 68 (199)
T ss_dssp CCCEEEEESCCHHHHHHHHHHHHHHCSCEEE-S----------SCCTTEEEEEESSCCCBHHHH----HH-HHTT-----
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHHcCCcEEe-c----------CCCCCCeEEEECCCCCCHHHH----HH-HHCC-----
Confidence 445556555554 4567789999884 53 1 234678999998863222221 11 1221
Q ss_pred hhcccccCCCCCCcccccCcchhccccccccCCcccccccccCCCCCCceE-EeccceeecccccccCCCC-cccCCC-C
Q psy14410 133 KYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYFIGVTLPPHMSSYY-VQPQWVFDSINAKQLAPVE-KYFIGV-T 209 (325)
Q Consensus 133 ~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y~pG~~lPpHlsp~Y-VQPQwVfDsiN~~~Llp~~-~Y~pG~-~ 209 (325)
.-.|.|+||.||+.+|++++.+.|......+. .+.. .+-+ .....+...|+.-- -|+.+. .
T Consensus 69 -------------~~Iv~~~Wv~~~~~~g~~l~e~~y~~~~~~~~--~~~~rl~r~-~~~~~~~~~LF~g~~~~~v~~~~ 132 (199)
T 3u3z_A 69 -------------CWVLSYDWVLWSLELGHWISEEPFELSHHFPA--APLCRSECH-LSAGPYRGTLFADQPVMFVSPAS 132 (199)
T ss_dssp -------------CEEEETHHHHHHHHHTSCCCSGGGBCTTTCTH--HHHHHHHHH-HCSSSCCCCTTTTSCCEEECTTC
T ss_pred -------------CcEEeHHHHHHHhhCCCCCChhhccccCCccc--cccchhhhh-hhcccccchhhCCCeEEEECCCC
Confidence 23789999999999999999999955443221 0000 0000 00000112222211 122221 1
Q ss_pred CCCC--cCCceecCCCCCCCCCCCcCcccccccCCCCceeeeeeeeccceeeeecccCccccCccccCC
Q psy14410 210 LPPH--LSPFIDTTKTEHYVPPEAEDPENERLRDPKNIQTLCKYYVQPQWVFDSINAKQLAPVEKYFIG 276 (325)
Q Consensus 210 LPPH--LSPFv~~~~~~~YvP~e~~~e~de~VdrP~n~~~~~R~YvQPQwvfD~iN~~~llp~~~Y~~g 276 (325)
-|+. |.--+....| .++..-. ..+=.+.+....+..++.|||||||+||||++.+||.++|++|
T Consensus 133 ~~~~~~L~~lI~~~GG-~v~~~~~--~~~iiI~~~~~~~~~~~~~V~p~Wi~DsI~~~~llp~~~Y~~~ 198 (199)
T 3u3z_A 133 SPPVAKLCELVHLCGG-RVSQVPR--QASIVIGPYSGKKKATVKYLSEKWVLDSITQHKVCAPENYLLS 198 (199)
T ss_dssp SSCHHHHHHHHHHTTC-CBCSSGG--GCSEEESCCCSCCCTTCEEECHHHHHHHHHHTSCCCGGGGBCC
T ss_pred CCCHHHHHHHHHHcCC-EEeccCC--CCEEEEeCCchhccCCCcEEChhHHHHHHHcCCcCChHhccCC
Confidence 1111 1111222222 2332110 0011133322345567788899999999999999999888887
No 11
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=99.22 E-value=2.4e-12 Score=113.01 Aligned_cols=47 Identities=13% Similarity=0.247 Sum_probs=24.3
Q ss_pred hhCCCCCceEEEec---ccChhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCC
Q psy14410 51 LKRLFEGLKVFLNR---EVPREPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRP 109 (325)
Q Consensus 51 ~~~LF~g~~FflsR---EvPre~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP 109 (325)
...||+|++|||++ +.+++.|+++|+++||+|.++- + .+||+||+++
T Consensus 157 ~~~lF~g~~~yl~~~~~~~~~~~l~~~i~~~GG~v~~~l-----------~-~~t~hVV~~~ 206 (264)
T 1z56_C 157 PLFLFSNRIAYVPRRKISTEDDIIEMKIKLFGGKITDQQ-----------S-LCNLIIIPYT 206 (264)
T ss_dssp CCC--------------------CHHHHHHHTTSCCCCS-----------S-SCSEEECCCS
T ss_pred chhhhCCeEEEEecCCCchhHHHHHHHHHHcCCEEeccc-----------C-CCEEEEEeCC
Confidence 46699999999998 7888999999999999998642 2 7799999975
No 12
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=99.20 E-value=1.1e-11 Score=106.98 Aligned_cols=81 Identities=22% Similarity=0.346 Sum_probs=57.1
Q ss_pred hhCCCCCce-EEEec--ccChhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhhhcc
Q psy14410 51 LKRLFEGLK-VFLNR--EVPREPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQ 127 (325)
Q Consensus 51 ~~~LF~g~~-FflsR--EvPre~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~~~~ 127 (325)
..+||+|++ ||++. +.+++.|+.+|+++||+|.|+.. + .+..|.+... .
T Consensus 116 ~~~LF~g~~~~~v~~~~~~~~~~L~~lI~~~GG~v~~~~~----------~--~~iiI~~~~~--~-------------- 167 (199)
T 3u3z_A 116 RGTLFADQPVMFVSPASSPPVAKLCELVHLCGGRVSQVPR----------Q--ASIVIGPYSG--K-------------- 167 (199)
T ss_dssp CCCTTTTSCCEEECTTCSSCHHHHHHHHHHTTCCBCSSGG----------G--CSEEESCCCS--C--------------
T ss_pred cchhhCCCeEEEECCCCCCCHHHHHHHHHHcCCEEeccCC----------C--CEEEEeCCch--h--------------
Confidence 468999995 77774 78999999999999999998641 1 1223333111 1
Q ss_pred ccccchhcccccCCCCCCcccccCcchhccccccccCCcccccccc
Q psy14410 128 LAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYFIGV 173 (325)
Q Consensus 128 ldp~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y~pG~ 173 (325)
....+.||+||||+|||++++++|.+.|.+|+
T Consensus 168 --------------~~~~~~~V~p~Wi~DsI~~~~llp~~~Y~~~~ 199 (199)
T 3u3z_A 168 --------------KKATVKYLSEKWVLDSITQHKVCAPENYLLSQ 199 (199)
T ss_dssp --------------CCTTCEEECHHHHHHHHHHTSCCCGGGGBCC-
T ss_pred --------------ccCCCcEEChhHHHHHHHcCCcCChHhccCCC
Confidence 12234588888888888888888888887774
No 13
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.4e-12 Score=104.06 Aligned_cols=36 Identities=50% Similarity=0.989 Sum_probs=31.7
Q ss_pred ccCCC-CceeeeeeeeccceeeeecccCccccCcccc
Q psy14410 239 LRDPK-NIQTLCKYYVQPQWVFDSINAKQLAPVEKYF 274 (325)
Q Consensus 239 VdrP~-n~~~~~R~YvQPQwvfD~iN~~~llp~~~Y~ 274 (325)
+|||. .+++.+|.||||||||||||+++|||+++|+
T Consensus 64 ~drp~~~~~~~~r~~VqPqWV~Dcin~~~lLp~~~Y~ 100 (100)
T 2ep8_A 64 VDRPGQQTSVIGRCYVQPQWVFDSVNARLLLPVAEYF 100 (100)
T ss_dssp CSCTTTSCCBTTBEEECTHHHHHHHHHTSCCCTTTCC
T ss_pred ecccchhhhcCCCeEEcchHHHHHHhcCCcCChhhcC
Confidence 56665 4567889999999999999999999999996
No 14
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=99.07 E-value=9.2e-11 Score=99.78 Aligned_cols=82 Identities=18% Similarity=0.166 Sum_probs=54.5
Q ss_pred CceEEEecc--cChhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCC--CCcccccchhhhhhhccccccc
Q psy14410 57 GLKVFLNRE--VPREPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPS--IGKQYISRVFDSINAKQLAPVE 132 (325)
Q Consensus 57 g~~FflsRE--vPre~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~--~~~~~~~r~~~s~~~~~ldp~~ 132 (325)
++.|.++.= --++.|.-+++.+||++.-+ -++++||.|+.... -..+++. ++ +.|
T Consensus 2 ~~vi~~sg~~~~~~~~l~~~~~~~G~~~~~~-----------~~~~~THlV~~~~~~~rt~K~l~----a~-~~g----- 60 (210)
T 2nte_A 2 PLVLIGSGLSSEQQKMLSELAVILKAKKYTE-----------FDSTVTHVVVPGDAVQSTLKCML----GI-LNG----- 60 (210)
T ss_dssp CCEEEESSCCHHHHHHHHHHHHHTTCEEESS-----------CCTTCCEEEESSSSCCCSHHHHH----HH-HTT-----
T ss_pred CEEEEECCCCHHHHHHHHHHHHHcCCEEeCC-----------CCCCCeEEEEcCCCcchHHHHHH----HH-hcC-----
Confidence 344555442 22567889999999998632 24688999997632 1222211 11 111
Q ss_pred hhcccccCCCCCCcccccCcchhccccccccCCccccccc
Q psy14410 133 KYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYFIG 172 (325)
Q Consensus 133 ~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y~pG 172 (325)
..+|.|+|+.||+.++++++.+.|...
T Consensus 61 -------------~~IV~~~Wl~~c~~~~~~~~e~~y~~~ 87 (210)
T 2nte_A 61 -------------CWILKFEWVKACLRRKVCEQEEKYEIP 87 (210)
T ss_dssp -------------CEEEETHHHHHHHHHTSCCCGGGTBCT
T ss_pred -------------CEEecHHHHHHHHHcCCcCChhhccCC
Confidence 237899999999999999999998664
No 15
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=98.97 E-value=5.4e-10 Score=100.16 Aligned_cols=90 Identities=22% Similarity=0.317 Sum_probs=61.0
Q ss_pred hhCCCCCceEEEec---------cc---ChhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccc
Q psy14410 51 LKRLFEGLKVFLNR---------EV---PREPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISR 118 (325)
Q Consensus 51 ~~~LF~g~~FflsR---------Ev---Pre~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r 118 (325)
...||+|++||+.+ ++ ..+.+...|+.+||++.++- ++++||.|++++.-....
T Consensus 161 ~~~lF~~~~vy~~~~~~~~~~~~~i~~~~l~~~~~~i~~~GG~v~~~l-----------~~~vTHVVv~~~~~r~~~--- 226 (263)
T 3ii6_X 161 PLSMFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCL-----------AEGVSHVIIGEDHSRVAD--- 226 (263)
T ss_dssp GGGTTTTCEEEECCBSSTTCGGGBCCSSHHHHHHHHHHHTTCEEESSC-----------CTTCCEEEECSCCTTHHH---
T ss_pred cchhhCCeEEEEecccccCCcccccchhHHHHHHHHHHccCCEEecCC-----------CCCceEEEECCCCccHHH---
Confidence 45799999999975 33 33445788999999998642 348999999985421100
Q ss_pred hhhhhhhccccccchhcccccCCCCCCcccccCcchhccccccccCCccccc
Q psy14410 119 VFDSINAKQLAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYF 170 (325)
Q Consensus 119 ~~~s~~~~~ldp~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y~ 170 (325)
.+.+. +.+. -.-.+|+|+||.||++.+++++.+.|.
T Consensus 227 -~~~~~-~~~~--------------~~~~iV~~~Wv~dci~~~~~l~E~~Y~ 262 (263)
T 3ii6_X 227 -FKAFR-RTFK--------------RKFKILKESWVTDSIDKCELQEENQYL 262 (263)
T ss_dssp -HHHHH-HTCS--------------SCCEEEETHHHHHHHHTTSCCCGGGTB
T ss_pred -HHHHH-hhcC--------------CCCEEeChHHHHHHHHcCCcCCHhhCC
Confidence 11110 1010 012478999999999999999988885
No 16
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=98.91 E-value=1.7e-09 Score=84.37 Aligned_cols=92 Identities=17% Similarity=0.268 Sum_probs=64.0
Q ss_pred HhhhhCCCCCceEEEecccC--hhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhhh
Q psy14410 48 VRKLKRLFEGLKVFLNREVP--REPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINA 125 (325)
Q Consensus 48 ~~~~~~LF~g~~FflsREvP--re~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~~ 125 (325)
.+...++|+|++|+++...+ |..|.-+|+++||++.++- +..+||.|+++-.- ...++ +....+
T Consensus 9 ~~~~~~~l~g~~i~isg~~~~~r~~l~~li~~~Gg~v~~~~-----------s~~~THlI~~~~~~--~~~~K-~~~A~~ 74 (107)
T 3l3e_A 9 KEEAPKPLHKVVVCVSKKLSKKQSELNGIAASLGADYRRSF-----------DETVTHFIYQGRPN--DTNRE-YKSVKE 74 (107)
T ss_dssp -----CTTTTCEEEECGGGGGGHHHHHHHHHHTTCEEESSC-----------CTTCCEEECCCCTT--CCCHH-HHHHHH
T ss_pred cccccCCCCCeEEEEeCCChHhHHHHHHHHHHcCCEEeccc-----------cCCceEEEecCCCC--CCCHH-HHHHHH
Confidence 44567899999999999764 8899999999999998642 35789999965111 00111 222222
Q ss_pred ccccccchhcccccCCCCCCcccccCcchhccccccccCCcccccc
Q psy14410 126 KQLAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYFI 171 (325)
Q Consensus 126 ~~ldp~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y~p 171 (325)
.|+ .+|.|+|+.||+++++.+|.+.|.+
T Consensus 75 ~gi------------------~IV~~~Wl~~c~~~~~~l~e~~Y~~ 102 (107)
T 3l3e_A 75 RGV------------------HIVSEHWLLDCAQECKHLPESLYPH 102 (107)
T ss_dssp TTC------------------EEECHHHHHHHHHHTSCCCGGGCCT
T ss_pred CCC------------------eEecHHHHHHHHHhCCCCchhhCCC
Confidence 222 3789999999999999999988853
No 17
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=98.89 E-value=1e-09 Score=91.84 Aligned_cols=87 Identities=16% Similarity=0.194 Sum_probs=55.5
Q ss_pred CceEEEecc--cChhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhhhccccccchh
Q psy14410 57 GLKVFLNRE--VPREPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQLAPVEKY 134 (325)
Q Consensus 57 g~~FflsRE--vPre~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~~~~ldp~~~~ 134 (325)
++.|.++.- --++.|.-+++.+||.+.-+ -++.+||.|+..+.- ....|. .|+
T Consensus 4 ~~~~~~sg~~~~~~~~l~~~~~~~G~~~~~~-----------~~~~~THli~~~~~~--~~~~rt------------~k~ 58 (214)
T 1t15_A 4 RMSMVVSGLTPEEFMLVYKFARKHHITLTNL-----------ITEETTHVVMKTDAE--FVCERT------------LKY 58 (214)
T ss_dssp CCEEEEESCCHHHHHHHHHHHHHHTCEECSS-----------CCTTCCEEEECBCTT--SEECCB------------HHH
T ss_pred cEEEEECCCCHHHHHHHHHHHHHhCCEEeCc-----------cCCCCcEEEEeCCcc--cchhhh------------HHH
Confidence 455555542 23566888899999998621 236789999998641 111221 111
Q ss_pred cccccCCCCCCcccccCcchhccccccccCCccccccc
Q psy14410 135 FIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYFIG 172 (325)
Q Consensus 135 ~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y~pG 172 (325)
+.+.. .-...|.|+|+.||+.++++++.+.|...
T Consensus 59 ~~a~~----~g~~IV~~~Wl~~~~~~~~~~~e~~y~~~ 92 (214)
T 1t15_A 59 FLGIA----GGKWVVSYFWVTQSIKERKMLNEHDFEVR 92 (214)
T ss_dssp HHHHH----TTCEEEETHHHHHHHHTTSCCCGGGGBCC
T ss_pred HHHHh----cCCEEeCHHHHHHHHHCCCcCChHHeEee
Confidence 11111 01237899999999999999999988654
No 18
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=1.8e-08 Score=81.67 Aligned_cols=51 Identities=24% Similarity=0.245 Sum_probs=42.0
Q ss_pred hhhhCCCCCceEEEecccC--hhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCC
Q psy14410 49 RKLKRLFEGLKVFLNREVP--REPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPS 110 (325)
Q Consensus 49 ~~~~~LF~g~~FflsREvP--re~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~ 110 (325)
....++|+|++|+++.-.. |+.|..+|+++||++..+- +..+||.|++++.
T Consensus 17 ~~~~~~f~g~~i~itG~~~~~r~~l~~~i~~~Gg~v~~~~-----------s~~~ThLI~~~~~ 69 (129)
T 2d8m_A 17 EELGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDW-----------TRDSTHLICAFAN 69 (129)
T ss_dssp HHHTTTSTTEEEEEESCCTTHHHHHHHHHHHTTEEEESSC-----------CTTCCEEEESSSS
T ss_pred CCccccCCCeEEEEeCCCcHHHHHHHHHHHHcCCEEeCCc-----------CCCCeEEEecCCC
Confidence 4567799999999999764 8999999999999997532 3468999999754
No 19
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=98.74 E-value=1.2e-08 Score=85.33 Aligned_cols=97 Identities=21% Similarity=0.350 Sum_probs=62.0
Q ss_pred hhhCCCCCceEEEec---ccChhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEE--EecCCCCCcccccchhhhhh
Q psy14410 50 KLKRLFEGLKVFLNR---EVPREPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQ--IVDRPSIGKQYISRVFDSIN 124 (325)
Q Consensus 50 ~~~~LF~g~~FflsR---EvPre~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHq--IvDRP~~~~~~~~r~~~s~~ 124 (325)
...+||+|++||+.+ +.+++.|+.+|+++||+|..+... . +....+|. |+|.-..... .+ +.++.
T Consensus 111 ~~~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~---~----~~~~~~~~ivi~~~~~~~~~--~~-~~~~a 180 (214)
T 1t15_A 111 QDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSS---F----TLGTGVHPIVVVQPDAWTED--NG-FHAIG 180 (214)
T ss_dssp TTSCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEECCSGGG---C----CCSTTCCEEEEECGGGCSSC--GG-GGSST
T ss_pred CCCcccCCCEEEEEecCCCCCHHHHHHHHHHCCCEEecCccc---c----ccCCCCccEEEECCCcccch--hh-HHHHH
Confidence 357899999999976 567999999999999998754211 0 11124564 3442111100 00 00000
Q ss_pred hccccccchhcccccCCCCCCcccccCcchhccccccccCCcccccccc
Q psy14410 125 AKQLAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYFIGV 173 (325)
Q Consensus 125 ~~~ldp~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y~pG~ 173 (325)
-.....+|+|+|++|||++++++|.+.|..++
T Consensus 181 -----------------~~~~~~iV~~~Wi~dsi~~~~~l~~~~Y~l~~ 212 (214)
T 1t15_A 181 -----------------QMCEAPVVTREWVLDSVALYQCQELDTYLIPQ 212 (214)
T ss_dssp -----------------TTCSSCEEEHHHHHHHHHHTSCCCSGGGBCCC
T ss_pred -----------------HhcCCcEEeccHHHHhHhhcCcCCCcceeecc
Confidence 00123588999999999999999999887765
No 20
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=98.66 E-value=5.6e-09 Score=83.44 Aligned_cols=90 Identities=18% Similarity=0.316 Sum_probs=54.9
Q ss_pred hhCCCCCceEEEe-ccc--C-hhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhhhc
Q psy14410 51 LKRLFEGLKVFLN-REV--P-REPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAK 126 (325)
Q Consensus 51 ~~~LF~g~~Ffls-REv--P-re~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~~~ 126 (325)
...+|+|++||+. ..+ + ++-+...++.+||+|.- .-+++|||.|+|... +. .++.+.+
T Consensus 8 ~~~~F~g~~v~~~p~~~~~~r~~i~~~~a~~~Ga~v~~-----------~~~~~vTHVVvd~~~-s~---~~~l~~l--- 69 (106)
T 2jw5_A 8 AEEWLSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCP-----------AQGPGVTHIVVDEGM-DY---ERALRLL--- 69 (106)
T ss_dssp GGGCGGGSCCCBCTTTCCSSSTTHHHHHHHHTTCCCCS-----------TTCTTCCEEEECSSS-CH---HHHHHHT---
T ss_pred CcCEeCCeEEEEEecCCchHHHHHHHHHHHHcCCEEee-----------ccCCCccEEEEcCCC-CH---HHHHHHH---
Confidence 4679999999873 222 2 44455588999999852 124589999999632 11 1101111
Q ss_pred cccccchhcccccCCCCCCcccccCcchhccccccccCCcccc
Q psy14410 127 QLAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKY 169 (325)
Q Consensus 127 ~ldp~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y 169 (325)
-.-++|++ -.+|.++|++||+..+++++.+.|
T Consensus 70 ---------~~~~l~~~--~~iV~~~Wv~dci~~~~llde~~y 101 (106)
T 2jw5_A 70 ---------RLPQLPPG--AQLVKSAWLSLCLQERRLVDVAGF 101 (106)
T ss_dssp ---------TCSSCCSS--CEEEEHHHHHHHHHTCSCCCGGGT
T ss_pred ---------hhcccCCC--cEEecCchHHHHHhcCcccCcccc
Confidence 01134432 245777777777777777777666
No 21
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.45 E-value=3.1e-07 Score=72.77 Aligned_cols=91 Identities=18% Similarity=0.218 Sum_probs=65.2
Q ss_pred hCCCCCceEEEec--ccChhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhhhcccc
Q psy14410 52 KRLFEGLKVFLNR--EVPREPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQLA 129 (325)
Q Consensus 52 ~~LF~g~~FflsR--EvPre~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~~~~ld 129 (325)
..+|+|++++++. ..-|..|.-+|+.+||++.- ..++..||-|++.+... ++... .+.
T Consensus 10 ~~~F~g~~i~~sg~~~~~r~~l~~~i~~~GG~~~~-----------~~~~~~THLV~~~~~~~-K~~~a-----~~~--- 69 (109)
T 2cou_A 10 VPPFQDCILSFLGFSDEEKHSMEEMTEMQGGSYLP-----------VGDERCTHLIVEENTVK-DLPFE-----PSK--- 69 (109)
T ss_dssp CCTTTTCBEEEESSCHHHHHHHHHHHHHHTCBCCC-----------TTCTTCSEEEECTTTCS-SCSSC-----CCT---
T ss_pred CCcCCCeEEEecCCCHHHHHHHHHHHHHcCCEEec-----------ccCCCccEEEEeCCccH-HHHHH-----HHC---
Confidence 4689999999987 34578889999999999861 24678899999987532 22110 001
Q ss_pred ccchhcccccCCCCCCcccccCcchhccccccccCCcccccccccCCC
Q psy14410 130 PVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYFIGVTLPP 177 (325)
Q Consensus 130 p~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y~pG~~lPp 177 (325)
.-..|.++|++||+..++.++...|.+...-+|
T Consensus 70 ---------------~i~IV~~~Wl~dsi~~g~~ldE~~Y~~~~~~tp 102 (109)
T 2cou_A 70 ---------------KLFVVKQEWFWGSIQMDARAGETMYLYEKANTP 102 (109)
T ss_dssp ---------------TSEEECHHHHHHHHHTTSCCCGGGTBCCCCCCS
T ss_pred ---------------CCeEecHHHHHHHHHcCCcCChhccCCCCCCCC
Confidence 123678888888888888888888877665444
No 22
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=98.23 E-value=8e-08 Score=76.25 Aligned_cols=26 Identities=19% Similarity=0.525 Sum_probs=23.3
Q ss_pred eeeeeeeeccceeeeecccCccccCc
Q psy14410 246 QTLCKYYVQPQWVFDSINAKQLAPVE 271 (325)
Q Consensus 246 ~~~~R~YvQPQwvfD~iN~~~llp~~ 271 (325)
.+.++.|||||||+||||+|+|||.+
T Consensus 63 ~~~~~~~V~p~WI~dcI~k~~Ll~~~ 88 (88)
T 3pc7_A 63 KNPAAQQVSPEWIWACIRKRRLVAPS 88 (88)
T ss_dssp TCTTSEEECHHHHHHHHHHTSCCSCC
T ss_pred cCCCCcEEchHHHHHHHhCCcccCCC
Confidence 46788999999999999999999864
No 23
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=98.23 E-value=3.5e-07 Score=77.88 Aligned_cols=92 Identities=20% Similarity=0.283 Sum_probs=60.7
Q ss_pred CCCCCceEEEecccC--hhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhhhccccc
Q psy14410 53 RLFEGLKVFLNREVP--REPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQLAP 130 (325)
Q Consensus 53 ~LF~g~~FflsREvP--re~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~~~~ldp 130 (325)
+-++++.|.++.-.+ +..|+-+++.+||.+.-+ -++..||.|+..+.- ....|.
T Consensus 3 ~~~~~~~i~~sg~~~~~~~~l~~~~~~~G~~~~~~-----------~~~~~THlI~~~~~~--~~~~rt----------- 58 (229)
T 1l0b_A 3 RAERDISMVVSGLTPKEVMIVQKFAEKYRLALTDV-----------ITEETTHVIIKTDAE--FVCERT----------- 58 (229)
T ss_dssp CCCCCCEEEEESCCHHHHHHHHHHHHHTTCEECSS-----------CCSSCCEEEECBCTT--SEECCC-----------
T ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHHHcCCEEeCC-----------cCCCCCEEEEcCCcc--cccccc-----------
Confidence 457788888876322 557899999999998621 236789999998631 011120
Q ss_pred cchhcccccCCCCCCcccccCcchhccccccccCCcccccccc
Q psy14410 131 VEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYFIGV 173 (325)
Q Consensus 131 ~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y~pG~ 173 (325)
.|+..++. .....|.|+|+.||+.++++++.+.|....
T Consensus 59 -~K~~~a~~----~g~~IV~~~Wl~~~~~~~~~~~e~~y~~~~ 96 (229)
T 1l0b_A 59 -LKYFLGIA----GGKWIVSYSWVIKSIQERKLLSVHEFEVKG 96 (229)
T ss_dssp -HHHHHHHH----TTCEEEETHHHHHHHTTTSCCCSGGGBCCE
T ss_pred -HHHHHHHH----CCCcEecHHHHHHHHHCCCcCChHHeEecc
Confidence 11111110 012378999999999999999999886543
No 24
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=98.19 E-value=9.8e-07 Score=78.45 Aligned_cols=96 Identities=16% Similarity=0.233 Sum_probs=65.9
Q ss_pred CCCCCceEEEecc-----cChhHHHHHHHhcCceeecCc--cccC--C-C-C-----CC----CCCCCCcEEEecCCCCC
Q psy14410 53 RLFEGLKVFLNRE-----VPREPLTLALRSFGAQVSWDK--TLFV--G-A-T-----FP----EDDESITHQIVDRPSIG 112 (325)
Q Consensus 53 ~LF~g~~FflsRE-----vPre~LefiIrSfGG~V~wd~--~~~~--g-a-~-----~~----e~d~~ITHqIvDRP~~~ 112 (325)
+||+|+.|.|++. -.++.|+-+|++.||+|.=+. .++. + + + .. ..+-..||-|.|+....
T Consensus 1 ~lF~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~~~rt 80 (241)
T 2vxb_A 1 LIFDDCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTFSRK 80 (241)
T ss_dssp CTTTTEEEEECCCSSTTSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSSCCCC
T ss_pred CCCCCcEEEEecCCCCchhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCCCCCc
Confidence 5899999999987 588999999999999986431 0110 0 0 0 00 00113599999986544
Q ss_pred cccccchhhhhhhccccccchhcccccCCCCCCcccccCcchhccccccccCCcccccc
Q psy14410 113 KQYISRVFDSINAKQLAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYFI 171 (325)
Q Consensus 113 ~~~~~r~~~s~~~~~ldp~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y~p 171 (325)
.+++.. .+.|++ .|.|+||.||+.++++++.+.|.-
T Consensus 81 ~K~~~a-----la~gip------------------iV~~~Wi~dc~~~~~~~~~~~ylL 116 (241)
T 2vxb_A 81 VKYLEA-----LAFNIP------------------CVHPQFIKQCLKMNRVVDFSPYLL 116 (241)
T ss_dssp HHHHHH-----HHHTCC------------------EECTHHHHHHHHHTSCCCSGGGBB
T ss_pred HHHHHH-----HHcCCC------------------EecHHHHHHHHHcCCcCChhhccC
Confidence 443322 244454 799999999999999999887743
No 25
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=98.18 E-value=2e-06 Score=69.18 Aligned_cols=85 Identities=16% Similarity=0.184 Sum_probs=61.1
Q ss_pred hCCCCCceEEEeccc------ChhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhhh
Q psy14410 52 KRLFEGLKVFLNREV------PREPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINA 125 (325)
Q Consensus 52 ~~LF~g~~FflsREv------Pre~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~~ 125 (325)
.-+|+|+++|+.-.. -.+.|...++++||+|..+- +.++||.|+...... + .+...+
T Consensus 5 ~p~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l-----------~~~vTHvV~~~~~~~-~-----~~~A~~ 67 (107)
T 3pa6_A 5 APILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTF-----------NKQVTHVIFKDGYQS-T-----WDKAQK 67 (107)
T ss_dssp CCTTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSC-----------CTTCCEEEEESCCHH-H-----HHHHHH
T ss_pred ccccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEeccc-----------CCCccEEEEeCCCCh-H-----HHHHhc
Confidence 459999999995543 24789999999999998542 357999999875421 1 111111
Q ss_pred ccccccchhcccccCCCCCCcccccCcchhccccccccCCcccccc
Q psy14410 126 KQLAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYFI 171 (325)
Q Consensus 126 ~~ldp~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y~p 171 (325)
.+ -..|.|+|+.||+..++.++.+.|..
T Consensus 68 ~~------------------i~iV~~~Wv~~C~~~~~~vdE~~Y~i 95 (107)
T 3pa6_A 68 RG------------------VKLVSVLWVEKCRTAGAHIDESLFPA 95 (107)
T ss_dssp HT------------------CEEECHHHHHHHHHHTSCCCGGGSBC
T ss_pred CC------------------CEEECHHHHHHHHHhCccCChhcccC
Confidence 11 13788999999999999999988864
No 26
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=98.11 E-value=2.4e-06 Score=76.49 Aligned_cols=93 Identities=24% Similarity=0.266 Sum_probs=66.1
Q ss_pred hhCCCCCceEEEeccc-------------------------------ChhHHHHHHHhcCceeecCccccCCCCCCCCCC
Q psy14410 51 LKRLFEGLKVFLNREV-------------------------------PREPLTLALRSFGAQVSWDKTLFVGATFPEDDE 99 (325)
Q Consensus 51 ~~~LF~g~~FflsREv-------------------------------Pre~LefiIrSfGG~V~wd~~~~~ga~~~e~d~ 99 (325)
.++||+|+.|+|+.-. .++.|+-.|++.||.|.=+-. .+ .....
T Consensus 12 ~~~iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~---~~--~~~~~ 86 (259)
T 1kzy_C 12 NKTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFN---EA--QCNTA 86 (259)
T ss_dssp STTTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCC---TT--TTTTT
T ss_pred CCcCcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCcc---cc--ccccC
Confidence 4789999999996532 457899999999999873321 00 01123
Q ss_pred CCcEEEecCCCCCcccccchhhhhhhccccccchhcccccCCCCCCcccccCcchhccccccccCCcccccc
Q psy14410 100 SITHQIVDRPSIGKQYISRVFDSINAKQLAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYFI 171 (325)
Q Consensus 100 ~ITHqIvDRP~~~~~~~~r~~~s~~~~~ldp~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y~p 171 (325)
..||-|.|+..-..+++-. .+.|+. .|.++||.||+.++++++.+.|.-
T Consensus 87 ~~t~LIa~~~~rt~K~l~a-----la~g~~------------------iVs~~Wl~dc~~~~~~l~~~~Y~l 135 (259)
T 1kzy_C 87 YQCLLIADQHCRTRKYFLC-----LASGIP------------------CVSHVWVHDSCHANQLQNYRNYLL 135 (259)
T ss_dssp CEEEEEESSCCCSHHHHHH-----HHHTCC------------------EEETHHHHHHHHHTSCCCGGGSBC
T ss_pred CCeEEEcCCCCCcHHHHHH-----HhcCCC------------------CccHHHHHHHHHcCCcCCHHHccC
Confidence 3689999996554443322 234444 789999999999999999988853
No 27
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=98.05 E-value=3.3e-07 Score=73.97 Aligned_cols=31 Identities=19% Similarity=0.526 Sum_probs=27.4
Q ss_pred eeeeeeeeccceeeeecccCccccCccccCC
Q psy14410 246 QTLCKYYVQPQWVFDSINAKQLAPVEKYFIG 276 (325)
Q Consensus 246 ~~~~R~YvQPQwvfD~iN~~~llp~~~Y~~g 276 (325)
.+-++.|||||||+||+|+++++|.++|+.-
T Consensus 65 ~~p~~~~V~P~WI~~Ci~~~klvp~~~y~~~ 95 (104)
T 3pc6_A 65 ENPSLAFVRPRWIYSCNEKQKLLPHQLYGVV 95 (104)
T ss_dssp TCTTCEEECHHHHHHHHHHTSCCCGGGGBCC
T ss_pred hCCCCeEEccHHHHHHHhcCccCCcccceec
Confidence 4567899999999999999999999999753
No 28
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=97.88 E-value=1.2e-06 Score=71.24 Aligned_cols=31 Identities=13% Similarity=0.270 Sum_probs=26.1
Q ss_pred eeeeeccceeeeecccCccccCccccCCCCCCCccc
Q psy14410 249 CKYYVQPQWVFDSINAKQLAPVEKYFIGVTLPPHLY 284 (325)
Q Consensus 249 ~R~YvQPQwvfD~iN~~~llp~~~Y~~g~~lppHlS 284 (325)
.+.+|+||||+||+|+|++||.+.| +|+|++
T Consensus 100 ~~~iV~~~Wv~dsi~~~~ll~e~~Y-----~~~~~s 130 (132)
T 1wf6_A 100 RPHVVGAKWLLECFSKGYMLSEEPY-----IHSGPS 130 (132)
T ss_dssp CCCEEEHHHHHHHHHHSSCCCSGGG-----BCCCSC
T ss_pred CCeEechHHHHHHHHcCCcCCHhhc-----cCCCCC
Confidence 4589999999999999999999999 456664
No 29
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=97.83 E-value=2.2e-05 Score=66.77 Aligned_cols=95 Identities=24% Similarity=0.413 Sum_probs=54.6
Q ss_pred hCCCCCceEEEec---ccChhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhh-hcc
Q psy14410 52 KRLFEGLKVFLNR---EVPREPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSIN-AKQ 127 (325)
Q Consensus 52 ~~LF~g~~FflsR---EvPre~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~-~~~ 127 (325)
..||+|++||+.. ..+++.|+-+|+++||+|.-.... . ..+...+|.|+=.+..... -.. +.++. ..
T Consensus 115 ~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~-----~-~~~~~~~~~vvv~~~~~~~-~~~-~~~l~~~~- 185 (229)
T 1l0b_A 115 EKLFEGLQIYCCEPFTNMPKDELERMLQLCGASVVKELPL-----L-TRDTGAHPIVLVQPSAWTE-DND-CPDIGQLC- 185 (229)
T ss_dssp --CCTTCEEEECSCCSSSCHHHHHHHHHHTTCEEECSSSC-----G-GGCCSSCCEEEEC--------------------
T ss_pred hhhhcCceEEEEecCCCCCHHHHHHHHHHCCCEEeCCccc-----c-cccCCCceEEEEcCCccch-hhh-HHHHHHHc-
Confidence 4899999999964 457999999999999998733211 0 1123446644422211000 000 11110 01
Q ss_pred ccccchhcccccCCCCCCcccccCcchhccccccccCCccccccc
Q psy14410 128 LAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYFIG 172 (325)
Q Consensus 128 ldp~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y~pG 172 (325)
.-.+|.+.|++|||.++++++.+.|...
T Consensus 186 -----------------~i~iVs~~WlldsI~~~~~~~~~~Y~l~ 213 (229)
T 1l0b_A 186 -----------------KGRLVMWDWVLDSISVYRCRDLDAYLVQ 213 (229)
T ss_dssp -------------------CEEETHHHHHHHHTTSCCCGGGGBCC
T ss_pred -----------------CCeEeehhHHHHHHhcCCcCCccceEcc
Confidence 1237889999999999999988888444
No 30
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=97.79 E-value=1.7e-06 Score=65.66 Aligned_cols=27 Identities=26% Similarity=0.576 Sum_probs=24.9
Q ss_pred eeeeeccceeeeecccCccccCccccC
Q psy14410 249 CKYYVQPQWVFDSINAKQLAPVEKYFI 275 (325)
Q Consensus 249 ~R~YvQPQwvfD~iN~~~llp~~~Y~~ 275 (325)
+..+|+||||+||+|+|++||.+.|.+
T Consensus 69 ~~~iV~p~Wl~dci~~~~~l~~~~Y~l 95 (97)
T 2ebw_A 69 GEKVIRPEWIVESIKAGRLLSYIPYQL 95 (97)
T ss_dssp SSCCBCTHHHHHHHHHTSCCCSGGGBS
T ss_pred CCCEeChHHHHHHHHcCCccCchHcEe
Confidence 568999999999999999999999974
No 31
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=97.78 E-value=2.5e-05 Score=63.50 Aligned_cols=85 Identities=18% Similarity=0.206 Sum_probs=60.9
Q ss_pred hCCCCCceEEEec--ccChhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhhhcccc
Q psy14410 52 KRLFEGLKVFLNR--EVPREPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQLA 129 (325)
Q Consensus 52 ~~LF~g~~FflsR--EvPre~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~~~~ld 129 (325)
-..|+|+++.++- ..-|..|.-+|.+.||+++-+ .++..||-|++.+... ++... .+.
T Consensus 19 ~p~F~g~~Ic~sGf~~~er~~l~~~i~~~GG~~~~~-----------l~~~cTHLV~~~~~~~-K~~~A-----~~~--- 78 (112)
T 3l46_A 19 VPPFQDCILSFLGFSDEEKTNMEEMTEMQGGKYLPL-----------GDERCTHLVVEENIVK-DLPFE-----PSK--- 78 (112)
T ss_dssp CCTTTTCEECEESCCHHHHHHHHHHHHHTTCEECCT-----------TCTTCSEEEECTTTBS-SCSSC-----CCS---
T ss_pred CCccCCeEEEEeCCCHHHHHHHHHHHHHcCCEECcc-----------cCCCceEEEecCCchh-hHHHH-----HHC---
Confidence 4589999999976 223688999999999999732 3577899999987633 22111 011
Q ss_pred ccchhcccccCCCCCCcccccCcchhccccccccCCcccccc
Q psy14410 130 PVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYFI 171 (325)
Q Consensus 130 p~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y~p 171 (325)
.-..|.++|++||+..|+.++...|..
T Consensus 79 ---------------~i~IVs~eWl~dsi~~g~~ldE~~Y~~ 105 (112)
T 3l46_A 79 ---------------KLYVVKQEWFWGSIQMDARAGETMYLY 105 (112)
T ss_dssp ---------------SCEEEEHHHHHHHHHHTSCCCGGGSBC
T ss_pred ---------------CeeEecHHHHHHHHHcCCccChhhcee
Confidence 223678889999999999888877744
No 32
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=2.3e-05 Score=65.01 Aligned_cols=89 Identities=20% Similarity=0.300 Sum_probs=56.1
Q ss_pred CCCCCceEEE-ecccC---hhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhhhccc
Q psy14410 53 RLFEGLKVFL-NREVP---REPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQL 128 (325)
Q Consensus 53 ~LF~g~~Ffl-sREvP---re~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~~~~l 128 (325)
.+|+|++.|| .+.+. ++-|+..+|..||+|. | .-+++|||.|+|- . .. .++. .+..
T Consensus 19 ~~F~g~~iy~v~~~~g~~R~~~l~~l~r~~G~~V~-~----------~ls~~VTHVVve~-~-~~---~e~~-~~l~--- 78 (120)
T 2coe_A 19 IKFQDLVVFILEKKMGTTRRALLMELARRKGFRVE-N----------ELSDSVTHIVAEN-N-SG---SDVL-EWLQ--- 78 (120)
T ss_dssp CSCTTCEEEEECTTTCHHHHHHHHHHHHHHTCEEC-S----------SCCTTCCEEEESS-C-CH---HHHH-HHHH---
T ss_pred cccCCeEEEEeecccchHHHHHHHHHHHHcCCEEe-e----------ccCCCcCEEEecC-C-CH---HHHH-HHHh---
Confidence 7999999888 66665 5667788999999986 2 2378899999982 2 11 1110 1110
Q ss_pred cccchhcccccCCCCCCcccccCcchhccccccccCCcccc
Q psy14410 129 APVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKY 169 (325)
Q Consensus 129 dp~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y 169 (325)
...|+.-..-.++.-.|+-||+.++++++.+.+
T Consensus 79 --------~~~l~~~~~~~lv~i~Wl~esmk~g~lv~ee~~ 111 (120)
T 2coe_A 79 --------AQKVQVSSQPELLDVSWLIECIGAGKPVEMTGK 111 (120)
T ss_dssp --------HCCCCCSSCCEEEEHHHHHHHHHTTSCCCCSSS
T ss_pred --------ccccccccccEEeecHHHHHHHHcCCccCcccc
Confidence 001111011245777888888888888877544
No 33
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=97.63 E-value=5.1e-05 Score=69.51 Aligned_cols=88 Identities=20% Similarity=0.245 Sum_probs=63.8
Q ss_pred hhCCCCCceEEEecc--cChhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhhhccc
Q psy14410 51 LKRLFEGLKVFLNRE--VPREPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQL 128 (325)
Q Consensus 51 ~~~LF~g~~FflsRE--vPre~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~~~~l 128 (325)
...+|+|++|+++.- ..|+.|.-+|+++||+++-+- ++...||-|+..+.- .+ ++...+.|+
T Consensus 196 ~~~~f~g~~i~~tG~~~~~r~~l~~li~~~GG~~~~~l----------s~~~~THLI~~~~~g-~K-----~~~A~~~gi 259 (298)
T 3olc_X 196 KCPIFLGCIICVTGLCGLDRKEVQQLTVKHGGQYMGQL----------KMNECTHLIVQEPKG-QK-----YECAKRWNV 259 (298)
T ss_dssp BCCTTTTCEEEECSCCHHHHHHHHHHHHHTTCEECSSC----------CTTTCCEEECSSSCS-HH-----HHHHHHTTC
T ss_pred cccccCCeEEEEeCCCCccHHHHHHHHHHcCCEEecee----------cCCCceEEEEeCCCc-hH-----HHHHHHCCC
Confidence 346899999999983 357899999999999986321 235789999998752 22 111111121
Q ss_pred cccchhcccccCCCCCCcccccCcchhccccccccCCccccccc
Q psy14410 129 APVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYFIG 172 (325)
Q Consensus 129 dp~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y~pG 172 (325)
..|.|+|+.||+.++++++.+.|...
T Consensus 260 ------------------~IV~~~Wl~dsi~~g~~lde~~Y~l~ 285 (298)
T 3olc_X 260 ------------------HCVTTQWFFDSIEKGFCQDESIYKTE 285 (298)
T ss_dssp ------------------EEECHHHHHHHHHHTSCCCGGGSBSC
T ss_pred ------------------eEEeHHHHHHHHHCCCCCCchhcCCC
Confidence 36889999999999999998888653
No 34
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=97.52 E-value=0.00011 Score=65.26 Aligned_cols=93 Identities=20% Similarity=0.218 Sum_probs=59.5
Q ss_pred hCCCCCceEEEecccCh-hHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhhhccccc
Q psy14410 52 KRLFEGLKVFLNREVPR-EPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQLAP 130 (325)
Q Consensus 52 ~~LF~g~~FflsREvPr-e~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~~~~ldp 130 (325)
.+||+|++|||....++ +.|.-+|++.||+|.=.. .++. ....||-+||-..+........+..+...|+-
T Consensus 133 ~~lF~g~~v~l~~~~~~~~~l~~ii~agGg~vl~~~-----~~~~--~~~~t~~~vd~~~~~~~~~~~~~~~~~~~~i~- 204 (235)
T 3al2_A 133 EGAFSGWKVILHVDQSREAGFKRLLQSGGAKVLPGH-----SVPL--FKEATHLFSDLNKLKPDDSGVNIAEAAAQNVY- 204 (235)
T ss_dssp SSTTTTCEEEEECCHHHHHHHHHHHHHTTCEECSSC-----CGGG--GGGCSEEEECC--------CCCHHHHHHTTCE-
T ss_pred CCCCCCcEEEEecCCCcHHHHHHHHHcCCcEEecCC-----CCCc--cccCceEEEecccCCccchhHHHHHHHHcCCc-
Confidence 58999999999876554 789999999999996211 1211 12369999984332111111123333333322
Q ss_pred cchhcccccCCCCCCcccccCcchhccccccccCCcccc
Q psy14410 131 VEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKY 169 (325)
Q Consensus 131 ~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y 169 (325)
++.+.|+.|++..+.+.+.+.|
T Consensus 205 -----------------~v~~ewlld~i~~~~~~~~~~y 226 (235)
T 3al2_A 205 -----------------CLRTEYIADYLMQESPPHVENY 226 (235)
T ss_dssp -----------------EEETHHHHHHHHCSSCCCHHHH
T ss_pred -----------------EEcHHHHHHHHhcCCCCChhhe
Confidence 6778999999999998887777
No 35
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=97.34 E-value=0.00048 Score=59.08 Aligned_cols=86 Identities=12% Similarity=0.222 Sum_probs=55.2
Q ss_pred hCCCCCceEEEecc--cChhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhhhcccc
Q psy14410 52 KRLFEGLKVFLNRE--VPREPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQLA 129 (325)
Q Consensus 52 ~~LF~g~~FflsRE--vPre~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~~~~ld 129 (325)
..||+|++||+... -+++.|.-+|+++||+|.=.. .... .-+|.|+..+.-... +....+.++
T Consensus 113 ~~lF~g~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~----~~~~-----~~~~ivI~~~~d~~~-----~~~~~~~~i- 177 (209)
T 2etx_A 113 RRLLEGYEIYVTPGVQPPPPQMGEIISCCGGTYLPSM----PRSY-----KPQRVVITCPQDFPH-----CSIPLRVGL- 177 (209)
T ss_dssp SCTTTTCEEEECTTCSSCHHHHHHHHHHTTCEECSSC----CCSC-----CTTEEEECCGGGGGG-----CHHHHHHTC-
T ss_pred CCCcCCcEEEEeCCCCCCHHHHHHHHHHCCCEEECCC----CCCC-----CCceEEEECcccHHH-----HHHHHHCCC-
Confidence 48999999999874 468899999999999986221 0111 115777754321111 111112221
Q ss_pred ccchhcccccCCCCCCcccccCcchhccccccccCCccccc
Q psy14410 130 PVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYF 170 (325)
Q Consensus 130 p~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y~ 170 (325)
..+-+.|++|||..+++ ..+.|.
T Consensus 178 -----------------~vvs~eWi~~sI~~q~l-d~e~y~ 200 (209)
T 2etx_A 178 -----------------PLLSPEFLLTGVLKQEA-KPEAFV 200 (209)
T ss_dssp -----------------CEECTHHHHHHHHHTCC-CGGGGB
T ss_pred -----------------eEEcHHHHHHHHHhccc-ChHHhe
Confidence 26778999999999887 677774
No 36
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=97.34 E-value=2e-05 Score=58.33 Aligned_cols=27 Identities=30% Similarity=0.647 Sum_probs=24.9
Q ss_pred eeeeeccceeeeecccCccccCccccC
Q psy14410 249 CKYYVQPQWVFDSINAKQLAPVEKYFI 275 (325)
Q Consensus 249 ~R~YvQPQwvfD~iN~~~llp~~~Y~~ 275 (325)
+..+|+||||+||+++|++||.++|++
T Consensus 65 ~~~iV~~~Wi~dci~~~~~l~e~~Y~l 91 (92)
T 4id3_A 65 NYKVVSPDWIVDSVKEARLLPWQNYSL 91 (92)
T ss_dssp TSCEECTHHHHHHHHHTSCCCGGGGBC
T ss_pred CCCEEcccHHHHHHHcCCcCChhhccc
Confidence 467999999999999999999999974
No 37
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=97.30 E-value=0.00023 Score=65.21 Aligned_cols=122 Identities=20% Similarity=0.238 Sum_probs=83.9
Q ss_pred hCCCCCceEEEeccc--ChhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhhhcccc
Q psy14410 52 KRLFEGLKVFLNREV--PREPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQLA 129 (325)
Q Consensus 52 ~~LF~g~~FflsREv--Pre~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~~~~ld 129 (325)
+..|+|++|.++.-. .|+.|.-+|+++||++.=+ -..+.||-|+.... +.++ ....+.|+
T Consensus 103 ~~~l~g~~~~~tG~~~~~r~~l~~~i~~~GG~v~~~-----------~t~~tTHLI~~~~~-t~Ky-----~~A~~~gi- 164 (298)
T 3olc_X 103 NMVMSDVTISCTSLEKEKREEVHKYVQMMGGRVYRD-----------LNVSVTHLIAGEVG-SKKY-----LVAANLKK- 164 (298)
T ss_dssp CCTTTTCEEEEESCCHHHHHHHHHHHHHTTCEECSS-----------CCTTCCEEEESSSC-SHHH-----HHHHHTTC-
T ss_pred ccccCCeEEEeCCCcHHhHHHHHHHHHHCCCEEecC-----------cCCCeeEEEEeCCC-ChHH-----HHHHHCCC-
Confidence 568999999987633 5788999999999998622 13568999998753 2221 11112222
Q ss_pred ccchhcccccCCCCCCcccccCcchhccccccccCCc--------cccc----------------------------ccc
Q psy14410 130 PVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPV--------EKYF----------------------------IGV 173 (325)
Q Consensus 130 p~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~--------~~y~----------------------------pG~ 173 (325)
..|.|+|+.+|...++.++. ..|. -|.
T Consensus 165 -----------------~IV~~~Wl~~c~~~~~~~~~~~~~~~~~~~~~~~~f~g~~i~~tG~~~~~r~~l~~li~~~GG 227 (298)
T 3olc_X 165 -----------------PILLPSWIKTLWEKSQEKKITRYTDINMEDFKCPIFLGCIICVTGLCGLDRKEVQQLTVKHGG 227 (298)
T ss_dssp -----------------CEECHHHHHHHHHHHHTTCCSSGGGSCGGGGBCCTTTTCEEEECSCCHHHHHHHHHHHHHTTC
T ss_pred -----------------eEeeHHHHHHHHHcCCcCCcccccccccccccccccCCeEEEEeCCCCccHHHHHHHHHHcCC
Confidence 36889999999988876542 2222 122
Q ss_pred cCCCCCC------------------------ceEEeccceeecccccccCCCCcccCCC
Q psy14410 174 TLPPHMS------------------------SYYVQPQWVFDSINAKQLAPVEKYFIGV 208 (325)
Q Consensus 174 ~lPpHls------------------------p~YVQPQwVfDsiN~~~Llp~~~Y~pG~ 208 (325)
..=+.++ -.-|-|+|++||+..+.+++.+.|.+..
T Consensus 228 ~~~~~ls~~~~THLI~~~~~g~K~~~A~~~gi~IV~~~Wl~dsi~~g~~lde~~Y~l~~ 286 (298)
T 3olc_X 228 QYMGQLKMNECTHLIVQEPKGQKYECAKRWNVHCVTTQWFFDSIEKGFCQDESIYKTEP 286 (298)
T ss_dssp EECSSCCTTTCCEEECSSSCSHHHHHHHHTTCEEECHHHHHHHHHHTSCCCGGGSBSCC
T ss_pred EEeceecCCCceEEEEeCCCchHHHHHHHCCCeEEeHHHHHHHHHCCCCCCchhcCCCC
Confidence 2223444 2478899999999999999999998754
No 38
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=97.30 E-value=0.00014 Score=65.18 Aligned_cols=93 Identities=20% Similarity=0.196 Sum_probs=58.6
Q ss_pred hCCCCCceEEEeccc---ChhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhhhccc
Q psy14410 52 KRLFEGLKVFLNREV---PREPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQL 128 (325)
Q Consensus 52 ~~LF~g~~FflsREv---Pre~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~~~~l 128 (325)
.+||+|++||+...+ .++.++++++++||+|..... .+.-..+.+.+.+|.||......... .+...+.++
T Consensus 153 ~~LF~G~~I~i~~~~~~~~~~~~~~Il~~~Ga~vv~~~~--s~~~~~d~~~~~~~viv~d~~~~~~~----~~~a~~~~i 226 (259)
T 1kzy_C 153 ENPFQNLKVLLVSDQQQNFLELWSEILMTGGAASVKQHH--SSAHNKDIALGVFDVVVTDPSCPASV----LKCAEALQL 226 (259)
T ss_dssp CCTTTTCEEEEEESCTTTTHHHHHHHHHHTTCSEEEEEE--SSSSCCCSCGGGCSEEEECTTCCHHH----HHHHHHHTC
T ss_pred CCCCCCeEEEEecCCCCCHHHHHHHHHHhcCCEEEeccc--cchhhhhccCCCCeEEEECCCChHHH----HHHHHhcCC
Confidence 579999999998765 568899999999999764321 11111223346677777533221110 111111211
Q ss_pred cccchhcccccCCCCCCcccccCcchhccccccccCCccc
Q psy14410 129 APVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEK 168 (325)
Q Consensus 129 dp~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~ 168 (325)
-.|...||+|||..|++++.+.
T Consensus 227 ------------------~iVs~EWv~~sI~~~~ll~~~~ 248 (259)
T 1kzy_C 227 ------------------PVVSQEWVIQCLIVGERIGFKQ 248 (259)
T ss_dssp ------------------CEECHHHHHHHHHHTSCCCTTS
T ss_pred ------------------CEecHHHHHHHHHhCCcCCCCc
Confidence 1678999999999999998643
No 39
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=97.15 E-value=0.00061 Score=64.88 Aligned_cols=85 Identities=20% Similarity=0.360 Sum_probs=61.8
Q ss_pred hCCCCCceEEEecccC------hhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhhh
Q psy14410 52 KRLFEGLKVFLNREVP------REPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINA 125 (325)
Q Consensus 52 ~~LF~g~~FflsREvP------re~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~~ 125 (325)
+.+|+|+++.++.-.| +..|.-+++++||++..+- +..+||.|+.++.- .++ .. |
T Consensus 280 ~~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~v-----------s~~vTHLVa~~~~t-~K~-----~~--A 340 (372)
T 3ef0_A 280 QKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDF-----------SVPPTHLIAAKIRT-EKV-----KK--A 340 (372)
T ss_dssp TTTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESSS-----------SSCCSEEEECSCCC-HHH-----HH--H
T ss_pred hhhcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCcC-----------CCCceEEEEcCCCc-hHH-----HH--H
Confidence 4799999999998765 3789999999999998542 35779999987542 221 11 1
Q ss_pred ccccccchhcccccCCCCCCcccccCcchhccccccccCCccccc
Q psy14410 126 KQLAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYF 170 (325)
Q Consensus 126 ~~ldp~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y~ 170 (325)
+.+ + .=..|.|.|+.||+..++.++.+.|.
T Consensus 341 ~~~------------~---~I~IV~~~Wl~~c~~~~~~vdE~~Y~ 370 (372)
T 3ef0_A 341 VSM------------G---NIKVVKLNWLTESLSQWKRLPESDYL 370 (372)
T ss_dssp HHS------------S---SCCEEEHHHHHHHHHTTSCCCGGGGB
T ss_pred Hhc------------C---CCEEEcHHHHHHHHHhCCcCChhhce
Confidence 111 0 11378899999999999999887773
No 40
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=97.02 E-value=0.00072 Score=57.98 Aligned_cols=85 Identities=15% Similarity=0.233 Sum_probs=54.1
Q ss_pred hCCCCCceEEEecccChhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhhhcccccc
Q psy14410 52 KRLFEGLKVFLNREVPREPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQLAPV 131 (325)
Q Consensus 52 ~~LF~g~~FflsREvPre~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~~~~ldp~ 131 (325)
++.-+++++.++-=.+ +.++-+|+++||.+.=+- ...||-|++++.-..+++.- .+.|
T Consensus 7 ~~~~~~~~v~~sG~~~-~~~~~~i~~lGg~~~~~~------------~~~THlI~~~~~rt~K~l~a-----~~~g---- 64 (209)
T 2etx_A 7 NQESTAPKVLFTGVVD-ARGERAVLALGGSLAGSA------------AEASHLVTDRIRRTVKFLCA-----LGRG---- 64 (209)
T ss_dssp -----CCEEEECSSCC-HHHHHHHHHTTCEECSST------------TTCSEEECSSCCCSHHHHHH-----HHHT----
T ss_pred cccCCCcEEEEeCCCc-HHHHHHHHHCCCEEeCCC------------CCceEEEECCCCCCHHHHHH-----HhcC----
Confidence 3344556665554334 447899999999985221 13799999985434343321 1222
Q ss_pred chhcccccCCCCCCcccccCcchhccccccccCCccccccc
Q psy14410 132 EKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYFIG 172 (325)
Q Consensus 132 ~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y~pG 172 (325)
.-.|.|+|+.||++++++++.+.|...
T Consensus 65 --------------~~IV~~~Wl~~~~~~~~~l~e~~y~~~ 91 (209)
T 2etx_A 65 --------------IPILSLDWLHQSRKAGFFLPPDEYVVT 91 (209)
T ss_dssp --------------CCEECTHHHHHHHHHTSCCCSGGGBCC
T ss_pred --------------CccccHHHHHHHHHcCCCCChhhcccc
Confidence 237899999999999999999888553
No 41
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=96.77 E-value=0.0015 Score=64.21 Aligned_cols=86 Identities=19% Similarity=0.328 Sum_probs=62.5
Q ss_pred hhCCCCCceEEEecccC------hhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhh
Q psy14410 51 LKRLFEGLKVFLNREVP------REPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSIN 124 (325)
Q Consensus 51 ~~~LF~g~~FflsREvP------re~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~ 124 (325)
.+++|+|++|.++.-.| |..|.-++.++||++..+- +...||-|+-++.- .+ +....
T Consensus 349 k~~~L~G~~IvfSG~~p~~~~~~r~~l~~~~~~lGa~~~~~v-----------s~~vTHLVa~~~~t-~K-----~~~A~ 411 (442)
T 3ef1_A 349 KQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDF-----------SVPPTHLIAAKIRT-EK-----VKKAV 411 (442)
T ss_dssp HHTTSTTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEECSSS-----------SSCCSEEEECSCCC-HH-----HHHHH
T ss_pred hhcccCCcEEEEecccCCCCCccHHHHHHHHHHcCCEEeCCC-----------CCCceEEEeCCCCC-HH-----HHHHH
Confidence 46799999999999765 4689999999999997642 35689999998642 22 11111
Q ss_pred hccccccchhcccccCCCCCCcccccCcchhccccccccCCccccc
Q psy14410 125 AKQLAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYF 170 (325)
Q Consensus 125 ~~~ldp~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y~ 170 (325)
+.| .=..|-|+|++||+..++.++...|.
T Consensus 412 ~~g-----------------~IkIVs~~WL~dcl~~~krldE~~Yl 440 (442)
T 3ef1_A 412 SMG-----------------NIKVVKLNWLTESLSQWKRLPESDYL 440 (442)
T ss_dssp HHS-----------------SSEEEEHHHHHHHHHHTSCCCGGGTB
T ss_pred hcC-----------------CCEEEeHHHHHHHHHcCCcCChhccc
Confidence 110 01378899999999999998887763
No 42
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=96.64 E-value=0.0019 Score=57.20 Aligned_cols=86 Identities=19% Similarity=0.245 Sum_probs=60.3
Q ss_pred CCceEEEecccC--hhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhhhccccccch
Q psy14410 56 EGLKVFLNREVP--REPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQLAPVEK 133 (325)
Q Consensus 56 ~g~~FflsREvP--re~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~~~~ldp~~~ 133 (325)
++.+|-++.-.+ ++.|.-+|+.+||.+.=+ ..-++..||-|+.++.-+.+++.- + +.
T Consensus 8 ~~~~~~~Sg~~~~~~~~l~~~i~~LGg~~~~~---------~~~~~~~THlV~~~~~RT~K~l~a----i-a~------- 66 (235)
T 3al2_A 8 KQYIFQLSSLNPQERIDYCHLIEKLGGLVIEK---------QCFDPTCTHIVVGHPLRNEKYLAS----V-AA------- 66 (235)
T ss_dssp CCCEEEEESCCHHHHHHHHHHHHHTTCEECCS---------SSCCTTCCEEEESSCCCSHHHHHH----H-HT-------
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHcCCEEecc---------CCCCCCCcEEEECCCCCCHHHHHH----H-Hc-------
Confidence 566777765222 567889999999998511 112466899999997544443322 1 11
Q ss_pred hcccccCCCCCCcccccCcchhccccccccCCcccccccc
Q psy14410 134 YFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYFIGV 173 (325)
Q Consensus 134 ~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y~pG~ 173 (325)
..-.|.|+||.||+.+|+.++.+.|.-+.
T Consensus 67 -----------G~wIvs~~wl~~s~~~g~~l~E~~ye~~~ 95 (235)
T 3al2_A 67 -----------GKWVLHRSYLEACRTAGHFVQEEDYEWGS 95 (235)
T ss_dssp -----------TCEEECTHHHHHHHHHTSCCCSGGGBTTS
T ss_pred -----------CCcCccHHHHHHHHHcCCCCChhceeecC
Confidence 23478999999999999999999997654
No 43
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=96.52 E-value=0.0043 Score=55.06 Aligned_cols=81 Identities=14% Similarity=0.103 Sum_probs=54.7
Q ss_pred hhhhCCCCCceEEEecc---cC------------hhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCc
Q psy14410 49 RKLKRLFEGLKVFLNRE---VP------------REPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGK 113 (325)
Q Consensus 49 ~~~~~LF~g~~FflsRE---vP------------re~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~ 113 (325)
+...+||+|+++|+... .+ ++.+.++++++||++ .. + ...++.++|.|++.....
T Consensus 146 ~~~~~Lf~g~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~Ga~~--~~-v------~~~~~~~~d~v~~~~~~~- 215 (241)
T 2vxb_A 146 LARKGPLFGKKILFIIPEAKSWQKKIENTEQGQKALAHVYHALALGADV--EI-R------PNVAHLECDLILTMDGNI- 215 (241)
T ss_dssp HHCCCTTTTCEEEECCCC------------CHHHHHHHHHHHHHTTCEE--EC-C------SCCSSCCCSEEECSSSCC-
T ss_pred hhcCcCCCCcEEEEEeCCCcccccccccccccchHHHHHHHHHHcCCce--ec-c------cccccCCccEEEECCccc-
Confidence 35679999999998532 23 389999999999999 21 1 122446788888753210
Q ss_pred ccccchhhhhhhccccccchhcccccCCCCCCcccccCcchhccccccccCCc
Q psy14410 114 QYISRVFDSINAKQLAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPV 166 (325)
Q Consensus 114 ~~~~r~~~s~~~~~ldp~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~ 166 (325)
.+ .+.-..|.+.||.||+-.|+++.+
T Consensus 216 ---~~------------------------~~~~~iV~~eWv~~~i~~g~~l~~ 241 (241)
T 2vxb_A 216 ---VD------------------------ETNCPVVDPEWIVECLISQSDIST 241 (241)
T ss_dssp ---CS------------------------SCSSCEECHHHHHHHHHHTSCTTC
T ss_pred ---cc------------------------cCCCCEecHHHHHHHHHhceecCC
Confidence 11 112236889999999999998753
No 44
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=96.31 E-value=0.0018 Score=56.70 Aligned_cols=82 Identities=15% Similarity=0.247 Sum_probs=55.9
Q ss_pred CCCceEEEecccC--hhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhhhccccccc
Q psy14410 55 FEGLKVFLNREVP--REPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQLAPVE 132 (325)
Q Consensus 55 F~g~~FflsREvP--re~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~~~~ldp~~ 132 (325)
..++++.++.-.+ ++.+.-+|+++||+|.-+ ....||-|++++.-..+++.. .+.|
T Consensus 14 ~~~~~i~~SG~~~~~~~~l~~~i~~lGg~v~~~------------~~~~THLI~~~~~rT~K~l~A-----~~~g----- 71 (219)
T 3sqd_A 14 ELTPFVLFTGFEPVQVQQYIKKLYILGGEVAES------------AQKCTHLIASKVTRTVKFLTA-----ISVV----- 71 (219)
T ss_dssp GGCCEEEECSCCHHHHHHHHHHHHHTTCEECSS------------GGGCSEEECSSCCCCHHHHHH-----TTTC-----
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHHCCCEEeCC------------CCCceEEEECCCCCCHHHHHH-----HHcC-----
Confidence 3566666665333 457889999999998622 146799999975433222211 1111
Q ss_pred hhcccccCCCCCCcccccCcchhccccccccCCcccccc
Q psy14410 133 KYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYFI 171 (325)
Q Consensus 133 ~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y~p 171 (325)
.-.|.|+|+.||+.++++++.+.|..
T Consensus 72 -------------~~IVs~~Wl~~c~~~~~~l~e~~y~l 97 (219)
T 3sqd_A 72 -------------KHIVTPEWLEECFRCQKFIDEQNYIL 97 (219)
T ss_dssp -------------SEEECHHHHHHHHHHTSCCCSGGGBC
T ss_pred -------------CCEecHHHHHHHHHcCCCCChHhccC
Confidence 23899999999999999999988854
No 45
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=95.87 E-value=0.0068 Score=50.26 Aligned_cols=78 Identities=21% Similarity=0.292 Sum_probs=51.3
Q ss_pred hCCCCCceEEEecccC-------hhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhh
Q psy14410 52 KRLFEGLKVFLNREVP-------REPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSIN 124 (325)
Q Consensus 52 ~~LF~g~~FflsREvP-------re~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~ 124 (325)
...|+|++|||+|+.. .+.|+-+|++.||.|.-.. |-+..+ -+.||.-+ ...
T Consensus 9 ~~vF~g~~Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~l------P~~s~~---~~yVVSpy--N~t---------- 67 (106)
T 2l42_A 9 GPPLSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSK------PRESKE---NVFIVSPY--NHT---------- 67 (106)
T ss_dssp SCSSCCCCBEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEEC------CCCCSS---CCCCBCTT--CCC----------
T ss_pred CccccCcEEEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhC------cccccC---CeEEEeCC--CCC----------
Confidence 4569999999999543 4899999999999986432 111100 22222221 111
Q ss_pred hccccccchhcccccCCCCCCcccccCcchhccccccccCCccccc
Q psy14410 125 AKQLAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYF 170 (325)
Q Consensus 125 ~~~ldp~~~~~~~~~~~~~~~~~yvqPQWv~Dcin~~~llp~~~y~ 170 (325)
-.--|-|-++-+|+.+++||.++.|.
T Consensus 68 --------------------~LpTVtpTYI~aC~~~nTLLnv~~YL 93 (106)
T 2l42_A 68 --------------------NLPTVTPTYIKACCQSNSLLNMENYL 93 (106)
T ss_dssp --------------------SSSBCCTTHHHHHHHSTTSCGGGGCC
T ss_pred --------------------CCccccHHHHHHHHhcCceecccccc
Confidence 11235577788999999999999884
No 46
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=95.28 E-value=0.0061 Score=53.85 Aligned_cols=65 Identities=14% Similarity=0.278 Sum_probs=46.5
Q ss_pred HHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhhhccccccchhcccccCCCCCCcccccC
Q psy14410 72 TLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQLAPVEKYFIGVTLPPHLSSYYVQP 151 (325)
Q Consensus 72 efiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~~~~ldp~~~~~~~~~~~~~~~~~yvqP 151 (325)
.-+|+++||.|.-+ ....||-|++++.-..+++.- ++.| .-.|.|
T Consensus 22 ~~~i~~lGg~v~~~------------~~~~THlV~~~~~RT~K~l~A-----ia~g------------------~~IVs~ 66 (220)
T 3l41_A 22 IDNLKKLDMSITSN------------PSKCTHLIAPRILRTSKFLCS-----IPYG------------------PCVVTM 66 (220)
T ss_dssp CGGGGGGTEEECSC------------TTTCSEEECSSCCCBHHHHHH-----GGGC------------------CEEECH
T ss_pred cchHhhcceeeccC------------chhhhhhhhhhHhhhcceeec-----CCCC------------------CeEEEh
Confidence 78899999998622 124799999986434333221 1222 247899
Q ss_pred cchhccccccccCCcccccc
Q psy14410 152 QWVFDSINAKQLAPVEKYFI 171 (325)
Q Consensus 152 QWv~Dcin~~~llp~~~y~p 171 (325)
+|+.||+.++++++.+.|..
T Consensus 67 ~Wl~~~~~~~~~l~e~~y~l 86 (220)
T 3l41_A 67 DWINSCLKTHEIVDEEPYLL 86 (220)
T ss_dssp HHHHHHHHHTSCCCSGGGBC
T ss_pred HHHHhhhhhhhccccCcccc
Confidence 99999999999999998854
No 47
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.49 E-value=0.0056 Score=49.36 Aligned_cols=32 Identities=22% Similarity=0.451 Sum_probs=28.0
Q ss_pred eeeeeeccceeeeecccCccccCccccCCCCC
Q psy14410 248 LCKYYVQPQWVFDSINAKQLAPVEKYFIGVTL 279 (325)
Q Consensus 248 ~~R~YvQPQwvfD~iN~~~llp~~~Y~~g~~l 279 (325)
++...|.|+||+||++++++|+.++|.++..-
T Consensus 79 ~gi~IV~~~Wl~d~~~~~~~l~e~~Y~l~~~~ 110 (129)
T 2d8m_A 79 LGGRIVRKEWVLDCHRMRRRLPSQRYLMAGPG 110 (129)
T ss_dssp HTCEEEETHHHHHHHHTTSCCCGGGGBCSSSS
T ss_pred CCCcEecHHHHHHHHHhCCcCChHhcccCCCC
Confidence 45678999999999999999999999887643
No 48
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=93.97 E-value=0.05 Score=47.99 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=29.7
Q ss_pred hhCCCCCceEEEeccc----ChhHHHHHHHhcCceee
Q psy14410 51 LKRLFEGLKVFLNREV----PREPLTLALRSFGAQVS 83 (325)
Q Consensus 51 ~~~LF~g~~FflsREv----Pre~LefiIrSfGG~V~ 83 (325)
..+||+|++|||...+ +++.|+-+|+++||+|.
T Consensus 110 ~~~LF~G~~f~it~~~~~~p~~~~l~~iI~~~GG~v~ 146 (220)
T 3l41_A 110 GPSLLEDYVVYLTSKTVAPENVPAVISIVKSNGGVCS 146 (220)
T ss_dssp CSCTTTTSEEEEETTSSCGGGHHHHHHHHHHTTCEEE
T ss_pred CchhhhheeEEEeccccCCCCCceEEEEEecCCcEec
Confidence 3799999999999966 58999999999999975
No 49
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=93.66 E-value=0.0069 Score=46.89 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=24.4
Q ss_pred eeeeeccceeeeecccCccccCccccC
Q psy14410 249 CKYYVQPQWVFDSINAKQLAPVEKYFI 275 (325)
Q Consensus 249 ~R~YvQPQwvfD~iN~~~llp~~~Y~~ 275 (325)
+-.-|.|+|+.||+++|++||.++|.+
T Consensus 76 gi~IV~~~Wl~~c~~~~~~l~e~~Y~~ 102 (107)
T 3l3e_A 76 GVHIVSEHWLLDCAQECKHLPESLYPH 102 (107)
T ss_dssp TCEEECHHHHHHHHHHTSCCCGGGCCT
T ss_pred CCeEecHHHHHHHHHhCCCCchhhCCC
Confidence 456799999999999999999999975
No 50
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=92.98 E-value=0.036 Score=47.21 Aligned_cols=92 Identities=24% Similarity=0.362 Sum_probs=57.9
Q ss_pred hCCCCCceEEEec-ccC---hhHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCcccccchhhhhhhcc
Q psy14410 52 KRLFEGLKVFLNR-EVP---REPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQ 127 (325)
Q Consensus 52 ~~LF~g~~FflsR-EvP---re~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~~~~~r~~~s~~~~~ 127 (325)
...|.+++.||-- .+- |+-|+-++++.|+.|. ++-.+++||.|++--+. .|+.+ +.++.
T Consensus 8 ~~~F~~v~iyive~kmG~sRr~fL~~la~~kGf~v~-----------~~~S~~VTHVV~E~~s~-----~~~~~-~L~~~ 70 (133)
T 2dun_A 8 STRFPGVAIYLVEPRMGRSRRAFLTGLARSKGFRVL-----------DACSSEATHVVMEETSA-----EEAVS-WQERR 70 (133)
T ss_dssp SCSEEEEEEEECHHHHCSHHHHHHHHHHHHHTEEEC-----------SSCCTTCCEEEESSCCH-----HHHHH-HHHHH
T ss_pred ccccCccEEEEecCCcCHHHHHHHHHHHHhcCCEec-----------cccCCCceEEEecCCCH-----HHHHH-HHHHh
Confidence 3689999977754 444 7889999999999995 23457899999965221 22111 11111
Q ss_pred ccccchhcccccCCCCCCc-ccccCcchhccccccccCCcccc
Q psy14410 128 LAPVEKYFIGVTLPPHLSS-YYVQPQWVFDSINAKQLAPVEKY 169 (325)
Q Consensus 128 ldp~~~~~~~~~~~~~~~~-~yvqPQWv~Dcin~~~llp~~~y 169 (325)
+ -.||+-.+. .++--.|.-+|+..+++++++.+
T Consensus 71 ~---------~~l~~~~~~~~lLdisWltecm~~g~pV~~e~~ 104 (133)
T 2dun_A 71 M---------AAAPPGCTPPALLDISWLTESLGAGQPVPVECR 104 (133)
T ss_dssp H---------HHSCTTCCCCEEEEHHHHHHHHHHTSCCCCCTT
T ss_pred h---------cccCcCCCCcEEeccHHHHHHHhcCCcCCcccc
Confidence 1 123322222 23667888899998888887554
No 51
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=92.35 E-value=0.023 Score=44.73 Aligned_cols=31 Identities=23% Similarity=0.453 Sum_probs=27.0
Q ss_pred eeeccceeeeecccCccccCccccCCCCCCC
Q psy14410 251 YYVQPQWVFDSINAKQLAPVEKYFIGVTLPP 281 (325)
Q Consensus 251 ~YvQPQwvfD~iN~~~llp~~~Y~~g~~lpp 281 (325)
.-|.++|+.||+.+|.+++.+.|.+...-+|
T Consensus 72 ~IV~~~Wl~dsi~~g~~ldE~~Y~~~~~~tp 102 (109)
T 2cou_A 72 FVVKQEWFWGSIQMDARAGETMYLYEKANTP 102 (109)
T ss_dssp EEECHHHHHHHHHTTSCCCGGGTBCCCCCCS
T ss_pred eEecHHHHHHHHHcCCcCChhccCCCCCCCC
Confidence 5689999999999999999999988875444
No 52
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=91.86 E-value=0.14 Score=44.81 Aligned_cols=33 Identities=12% Similarity=0.242 Sum_probs=29.5
Q ss_pred hhCCCCCceEEEecc--cChhHHHHHHHhcCceee
Q psy14410 51 LKRLFEGLKVFLNRE--VPREPLTLALRSFGAQVS 83 (325)
Q Consensus 51 ~~~LF~g~~FflsRE--vPre~LefiIrSfGG~V~ 83 (325)
..+||+|++||+... -+++.|.-+|+++||+|.
T Consensus 119 ~~~LF~G~~f~it~~~~~~~~~l~~lI~~~GG~v~ 153 (219)
T 3sqd_A 119 VSPLFKAKYFYITPGICPSLSTMKAIVECAGGKVL 153 (219)
T ss_dssp HSCTTTTEEEEECTTCSSCHHHHHHHHHHTTCEEE
T ss_pred cccccCCcEEEEeCCCCCCHHHHHHHHHHCCCEEE
Confidence 578999999999884 468999999999999986
No 53
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=87.73 E-value=0.059 Score=42.75 Aligned_cols=23 Identities=17% Similarity=0.453 Sum_probs=17.4
Q ss_pred eeeccceeeeecccCccccCccc
Q psy14410 251 YYVQPQWVFDSINAKQLAPVEKY 273 (325)
Q Consensus 251 ~YvQPQwvfD~iN~~~llp~~~Y 273 (325)
..|.++|+.||+.+|.+|+.+.|
T Consensus 79 ~iV~~~Wv~dci~~~~llde~~y 101 (106)
T 2jw5_A 79 QLVKSAWLSLCLQERRLVDVAGF 101 (106)
T ss_dssp EEEEHHHHHHHHHTCSCCCGGGT
T ss_pred EEecCchHHHHHhcCcccCcccc
Confidence 55777777777777777777777
No 54
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=82.84 E-value=0.14 Score=40.84 Aligned_cols=26 Identities=15% Similarity=0.072 Sum_probs=23.9
Q ss_pred eeeccceeeeecccCccccCccccCC
Q psy14410 251 YYVQPQWVFDSINAKQLAPVEKYFIG 276 (325)
Q Consensus 251 ~YvQPQwvfD~iN~~~llp~~~Y~~g 276 (325)
.-|.|+||.||+-+|++++.+.|.+.
T Consensus 71 ~iV~~~Wv~~C~~~~~~vdE~~Y~i~ 96 (107)
T 3pa6_A 71 KLVSVLWVEKCRTAGAHIDESLFPAA 96 (107)
T ss_dssp EEECHHHHHHHHHHTSCCCGGGSBCC
T ss_pred EEECHHHHHHHHHhCccCChhcccCC
Confidence 57999999999999999999999863
No 55
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=79.40 E-value=0.24 Score=40.04 Aligned_cols=28 Identities=25% Similarity=0.477 Sum_probs=24.4
Q ss_pred eeeccceeeeecccCccccCccccCCCC
Q psy14410 251 YYVQPQWVFDSINAKQLAPVEKYFIGVT 278 (325)
Q Consensus 251 ~YvQPQwvfD~iN~~~llp~~~Y~~g~~ 278 (325)
.=|.++|+.|||-.|.+++...|..-..
T Consensus 81 ~IVs~eWl~dsi~~g~~ldE~~Y~~~~~ 108 (112)
T 3l46_A 81 YVVKQEWFWGSIQMDARAGETMYLYEKA 108 (112)
T ss_dssp EEEEHHHHHHHHHHTSCCCGGGSBCCC-
T ss_pred eEecHHHHHHHHHcCCccChhhceeccC
Confidence 4688999999999999999999987553
No 56
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=57.19 E-value=9.4 Score=32.00 Aligned_cols=35 Identities=17% Similarity=0.122 Sum_probs=30.3
Q ss_pred hhhCCCCCceEEEecccChhHHHHHHHhcCcee-ec
Q psy14410 50 KLKRLFEGLKVFLNREVPREPLTLALRSFGAQV-SW 84 (325)
Q Consensus 50 ~~~~LF~g~~FflsREvPre~LefiIrSfGG~V-~w 84 (325)
+.+.||+|.+|+....==...|.-+|+..||.. .|
T Consensus 9 ~~~~LF~GKtFvFLn~KQ~kkl~~aV~~~GG~~~l~ 44 (118)
T 2k2w_A 9 KRKSIFKDKVFLFLNAKQYKKLSPAVLFGGGKTDLL 44 (118)
T ss_dssp CCSCSSTTCEEEESCSSTHHHHHHHHHHTTCEEECC
T ss_pred hHHhhccCCEEEEeCHHHHHHHHHHHHhcCceEEec
Confidence 467899999999888888889999999999994 45
No 57
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=49.66 E-value=20 Score=28.61 Aligned_cols=31 Identities=19% Similarity=0.419 Sum_probs=27.8
Q ss_pred CCCCCceEEEeccc---ChhHHHHHHHhcCceee
Q psy14410 53 RLFEGLKVFLNREV---PREPLTLALRSFGAQVS 83 (325)
Q Consensus 53 ~LF~g~~FflsREv---Pre~LefiIrSfGG~V~ 83 (325)
+.|.|.+|.|.-.. +|+.+.-+|.++||+|.
T Consensus 31 ~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~ 64 (109)
T 2k6g_A 31 NCLEGLIFVITGVLESIERDEAKSLIERYGGKVT 64 (109)
T ss_dssp TTTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEE
T ss_pred CCCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEee
Confidence 46999999998855 79999999999999997
No 58
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.97 E-value=20 Score=28.98 Aligned_cols=31 Identities=19% Similarity=0.419 Sum_probs=27.6
Q ss_pred CCCCCceEEEeccc---ChhHHHHHHHhcCceee
Q psy14410 53 RLFEGLKVFLNREV---PREPLTLALRSFGAQVS 83 (325)
Q Consensus 53 ~LF~g~~FflsREv---Pre~LefiIrSfGG~V~ 83 (325)
+.|.|.+|.|.-.. +|+.+.-+|+++||+|.
T Consensus 21 ~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~ 54 (112)
T 2ebu_A 21 NCLEGLIFVITGVLESIERDEAKSLIERYGGKVT 54 (112)
T ss_dssp SSSTTCEEEECSCCSSSCHHHHHHHHHHTTCEEC
T ss_pred CCcCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEe
Confidence 46999999998854 89999999999999986
No 59
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=42.81 E-value=15 Score=28.46 Aligned_cols=33 Identities=33% Similarity=0.561 Sum_probs=28.1
Q ss_pred hCCCCCceEEEeccc--ChhHHHHHHHhcCceeec
Q psy14410 52 KRLFEGLKVFLNREV--PREPLTLALRSFGAQVSW 84 (325)
Q Consensus 52 ~~LF~g~~FflsREv--Pre~LefiIrSfGG~V~w 84 (325)
...|.|.+|.+.-.. +|+.+.-+|.++||+|.-
T Consensus 5 ~~~l~G~~~v~TG~l~~~R~e~~~~i~~~Gg~v~~ 39 (92)
T 1l7b_A 5 GEALKGLTFVITGELSRPREEVKALLRRLGAKVTD 39 (92)
T ss_dssp CCSSTTCEEECSTTTTSCHHHHHHHHHHTTCEEES
T ss_pred CCCcCCcEEEEecCCCCCHHHHHHHHHHcCCEEeC
Confidence 467999999987633 799999999999999974
No 60
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=41.49 E-value=28 Score=28.07 Aligned_cols=32 Identities=6% Similarity=0.350 Sum_probs=27.7
Q ss_pred hCCCCCceEEEeccc--ChhHHHHHHHhcCceee
Q psy14410 52 KRLFEGLKVFLNREV--PREPLTLALRSFGAQVS 83 (325)
Q Consensus 52 ~~LF~g~~FflsREv--Pre~LefiIrSfGG~V~ 83 (325)
.+.|.|.+|.|.-.. +|+.+.-.|.+.||+|.
T Consensus 8 ~~~l~G~~~ViTG~l~~~R~e~k~~ie~~Ggkv~ 41 (113)
T 2cok_A 8 DKPLSNMKILTLGKLSRNKDEVKAMIEKLGGKLT 41 (113)
T ss_dssp CCSSSSCEEEECSCCSSCHHHHHHHHHHTTCEEE
T ss_pred CCCcCCCEEEEEecCCCCHHHHHHHHHHCCCEEc
Confidence 457999999998743 79999999999999996
No 61
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=40.15 E-value=32 Score=30.19 Aligned_cols=56 Identities=16% Similarity=0.258 Sum_probs=37.7
Q ss_pred HhhhhCCCC-CceEEEecccC-------h-------hHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCC
Q psy14410 48 VRKLKRLFE-GLKVFLNREVP-------R-------EPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIG 112 (325)
Q Consensus 48 ~~~~~~LF~-g~~FflsREvP-------r-------e~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~ 112 (325)
.+.-+++|. +++||.-.--. + +-|.--+.+.||+|. +-.|.+|||.|.-||.-.
T Consensus 52 Q~~WRkifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~-----------~FFd~~VTiVIT~R~i~~ 120 (160)
T 3qbz_A 52 QTNWKKIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQIT-----------QFFDTTVTIVITRRSVEN 120 (160)
T ss_dssp HHHHHHHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEE-----------SSCCTTCCEEEESSCSSC
T ss_pred HHHHHHhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEee-----------eeccCCeEEEEecCcCcc
Confidence 344667898 79999976221 1 223345669999985 124678999999999765
Q ss_pred cc
Q psy14410 113 KQ 114 (325)
Q Consensus 113 ~~ 114 (325)
..
T Consensus 121 ~~ 122 (160)
T 3qbz_A 121 IY 122 (160)
T ss_dssp GG
T ss_pred cc
Confidence 43
No 62
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}
Probab=35.95 E-value=40 Score=28.76 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=25.8
Q ss_pred hHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCc
Q psy14410 69 EPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGK 113 (325)
Q Consensus 69 e~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~ 113 (325)
+-|...+++.||+|. +| -|.++||.|..||....
T Consensus 33 ~llk~~f~~LGa~I~---------~F--Fd~~VTiiITrR~~~~~ 66 (134)
T 3oq4_A 33 DLLKRGFLTLGAQIT---------QF--FDTTVTIVITRRSVENI 66 (134)
T ss_dssp HHHHHHHHHTTCEEE---------SS--CCTTCCEEEESSCGGGG
T ss_pred HHHHHHHHHcCCEEe---------ee--cCCceEEEEeCCcCccc
Confidence 446677889999996 22 46789999999987543
No 63
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=30.23 E-value=7.6 Score=36.91 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=22.8
Q ss_pred eeeccceeeeecccCccccCccccC
Q psy14410 251 YYVQPQWVFDSINAKQLAPVEKYFI 275 (325)
Q Consensus 251 ~YvQPQwvfD~iN~~~llp~~~Y~~ 275 (325)
.-|-|+|+.||+..++.++.+.|..
T Consensus 347 ~IV~~~Wl~~c~~~~~~vdE~~Y~l 371 (372)
T 3ef0_A 347 KVVKLNWLTESLSQWKRLPESDYLL 371 (372)
T ss_dssp CEEEHHHHHHHHHTTSCCCGGGGBC
T ss_pred EEEcHHHHHHHHHhCCcCChhhcee
Confidence 5789999999999999999999964
No 64
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=27.26 E-value=59 Score=28.22 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=25.3
Q ss_pred hHHHHHHHhcCceeecCccccCCCCCCCCCCCCcEEEecCCCCCc
Q psy14410 69 EPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGK 113 (325)
Q Consensus 69 e~LefiIrSfGG~V~wd~~~~~ga~~~e~d~~ITHqIvDRP~~~~ 113 (325)
+-|...+++.||+|. +| .|.++||.|..||....
T Consensus 50 ~llkk~f~~LGa~I~---------~F--Fd~~VTiIITrR~~~~~ 83 (151)
T 3oq0_A 50 DLLKRGFLTLGAQIT---------QF--FDTTVTIVITRRSVENI 83 (151)
T ss_dssp HHHHHHHHHHTCEEE---------SS--CCTTCCEEEESSCGGGG
T ss_pred HHHHHHHHHcCCEEe---------ee--cCCceEEEEeCCcCccc
Confidence 345567889999995 22 46789999999986643
No 65
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=25.06 E-value=9.6 Score=37.49 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=22.4
Q ss_pred eeeccceeeeecccCccccCccccC
Q psy14410 251 YYVQPQWVFDSINAKQLAPVEKYFI 275 (325)
Q Consensus 251 ~YvQPQwvfD~iN~~~llp~~~Y~~ 275 (325)
.-|-|+|++||+-.++.++.+.|..
T Consensus 417 kIVs~~WL~dcl~~~krldE~~YlL 441 (442)
T 3ef1_A 417 KVVKLNWLTESLSQWKRLPESDYLL 441 (442)
T ss_dssp EEEEHHHHHHHHHHTSCCCGGGTBC
T ss_pred EEEeHHHHHHHHHcCCcCChhcccc
Confidence 5789999999999999999999964
No 66
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.31 E-value=16 Score=30.08 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=21.1
Q ss_pred eeeeccceeeeecccCccccCccc
Q psy14410 250 KYYVQPQWVFDSINAKQLAPVEKY 273 (325)
Q Consensus 250 R~YvQPQwvfD~iN~~~llp~~~Y 273 (325)
-..|.-.|+-||+.+|++++++.+
T Consensus 88 ~~lv~i~Wl~esmk~g~lv~ee~~ 111 (120)
T 2coe_A 88 PELLDVSWLIECIGAGKPVEMTGK 111 (120)
T ss_dssp CEEEEHHHHHHHHHTTSCCCCSSS
T ss_pred cEEeecHHHHHHHHcCCccCcccc
Confidence 367999999999999999999754
Done!