RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14410
(325 letters)
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome
biogenesis, DNA damage, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 100
Score = 130 bits (329), Expect = 3e-38
Identities = 60/122 (49%), Positives = 69/122 (56%), Gaps = 28/122 (22%)
Query: 49 RKLKRLFEGLKVFLNREVPREPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDR 108
K K+LFEGLK FLNREVPRE L +RSFG +VSWDK+L +GAT+ D ITHQIVDR
Sbjct: 7 GKHKKLFEGLKFFLNREVPREALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDR 66
Query: 109 PSIGKQYISRVFDSINAKQLAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEK 168
P I R YVQPQWVFDS+NA+ L PV +
Sbjct: 67 PGQQTSVIGR----------------------------CYVQPQWVFDSVNARLLLPVAE 98
Query: 169 YF 170
YF
Sbjct: 99 YF 100
Score = 52.2 bits (125), Expect = 5e-09
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 240 RDPKNIQTLCKYYVQPQWVFDSINAKQLAPVEKYF 274
R + + + YVQPQWVFDS+NA+ L PV +YF
Sbjct: 66 RPGQQTSVIGRCYVQPQWVFDSVNARLLLPVAEYF 100
Score = 51.0 bits (122), Expect = 1e-08
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 178 HMSSYYVQPQWVFDSINAKQLAPVEKYF 205
+ YVQPQWVFDS+NA+ L PV +YF
Sbjct: 73 VIGRCYVQPQWVFDSVNARLLLPVAEYF 100
Score = 50.6 bits (121), Expect = 2e-08
Identities = 17/24 (70%), Positives = 20/24 (83%)
Query: 284 YYVQPQWVFDSINAKQLAPVEKYF 307
YVQPQWVFDS+NA+ L PV +YF
Sbjct: 77 CYVQPQWVFDSVNARLLLPVAEYF 100
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT,
topoisomerase II binding protein, checkpoint; NMR {Homo
sapiens} SCOP: c.15.1.5
Length = 132
Score = 54.9 bits (132), Expect = 1e-09
Identities = 20/151 (13%), Positives = 42/151 (27%), Gaps = 37/151 (24%)
Query: 29 TNSEADAEKVEEFKREAEKVRKLKRLFEGLKVFLN--REVPREPLTLALRSFGAQVSWDK 86
NS+ + + + + L +G +++L + L + S G
Sbjct: 15 LNSKLEPTLENLENLDVSAFQAPEDLLDGCRIYLCGFSGRKLDKLRRLINSGGGVRF--- 71
Query: 87 TLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQLAPVEKYFIGVTLPPHLSS 146
+ +E +TH IV + N P
Sbjct: 72 --------NQLNEDVTHVIVGDYD------DELKQFWNKSAHRP---------------- 101
Query: 147 YYVQPQWVFDSINAKQLAPVEKYFIGVTLPP 177
+ V +W+ + + + E Y + P
Sbjct: 102 HVVGAKWLLECFSKGYMLSEEPYI--HSGPS 130
Score = 38.3 bits (89), Expect = 6e-04
Identities = 7/47 (14%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 235 ENERLRDPKNIQTLCKYYVQPQWVFDSINAKQLAPVEKYFIGVTLPP 281
++ L+ N + V +W+ + + + E Y + P
Sbjct: 86 YDDELKQFWNKSAHRPHVVGAKWLLECFSKGYMLSEEPYI--HSGPS 130
Score = 36.8 bits (85), Expect = 0.002
Identities = 5/34 (14%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 281 PHLYYVQPQWVFDSINAKQLAPVEKYFIGVTLPP 314
+ V +W+ + + + E Y + P
Sbjct: 99 HRPHVVGAKWLLECFSKGYMLSEEPYI--HSGPS 130
Score = 36.0 bits (83), Expect = 0.004
Identities = 5/31 (16%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 182 YYVQPQWVFDSINAKQLAPVEKYFIGVTLPP 212
+ V +W+ + + + E Y + P
Sbjct: 102 HVVGAKWLLECFSKGYMLSEEPYI--HSGPS 130
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA
replication, translession synthesis, TLS, DNA polymerase
zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Length = 97
Score = 52.9 bits (127), Expect = 2e-09
Identities = 20/122 (16%), Positives = 36/122 (29%), Gaps = 38/122 (31%)
Query: 52 KRLFEGLKVFLN--REVPREPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRP 109
+F G+ +++N + E L + G Q TH I
Sbjct: 10 STIFSGVAIYVNGYTDPSAEELRKLMMLHGGQYHVY----------YSRSKTTHIIATNL 59
Query: 110 SIGKQYISRVFDSINAKQLAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKY 169
K K+L + ++P+W+ +SI A +L Y
Sbjct: 60 PNAK-----------IKELKGEK---------------VIRPEWIVESIKAGRLLSYIPY 93
Query: 170 FI 171
+
Sbjct: 94 QL 95
Score = 42.2 bits (99), Expect = 2e-05
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 238 RLRDPKNIQTLCKYYVQPQWVFDSINAKQLAPVEKYFI 275
L + K + + ++P+W+ +SI A +L Y +
Sbjct: 58 NLPNAKIKELKGEKVIRPEWIVESIKAGRLLSYIPYQL 95
Score = 37.1 bits (86), Expect = 8e-04
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 282 HLYYVQPQWVFDSINAKQLAPVEKYFI 308
++P+W+ +SI A +L Y +
Sbjct: 69 GEKVIRPEWIVESIKAGRLLSYIPYQL 95
Score = 37.1 bits (86), Expect = 0.001
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 183 YVQPQWVFDSINAKQLAPVEKYFI 206
++P+W+ +SI A +L Y +
Sbjct: 72 VIRPEWIVESIKAGRLLSYIPYQL 95
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein
interactions, DNA L III-alpha BRCT2 domain, DNA binding
protein; HET: DNA; 1.90A {Mus musculus} PDB: 3pc8_A*
3qvg_B* 1cdz_A
Length = 104
Score = 53.0 bits (127), Expect = 3e-09
Identities = 22/132 (16%), Positives = 40/132 (30%), Gaps = 36/132 (27%)
Query: 50 KLKRLFEGLKVFLNREVP---REPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIV 106
+L FEG FL E P R L + +F G +E + I
Sbjct: 3 ELPDFFEGKHFFLYGEFPGDERRRLIRYVTAFN-----------GELEDYMNERVQFVIT 51
Query: 107 DRPSIGKQYISRVFDSINAKQLAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPV 166
+ + + + S +V+P+W++ ++L P
Sbjct: 52 AQEWDPNFEEALMENP----------------------SLAFVRPRWIYSCNEKQKLLPH 89
Query: 167 EKYFIGVTLPPH 178
+ Y + H
Sbjct: 90 QLYGVVPQAHHH 101
Score = 39.5 bits (92), Expect = 2e-04
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 281 PHLYYVQPQWVFDSINAKQLAPVEKYFIGVTLPPH 315
P L +V+P+W++ ++L P + Y + H
Sbjct: 67 PSLAFVRPRWIYSCNEKQKLLPHQLYGVVPQAHHH 101
Score = 37.2 bits (86), Expect = 9e-04
Identities = 11/69 (15%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 218 IDTTKTEHYVPPEAEDPENE-RLRDPKNIQTLCKYYVQPQWVFDSINAKQLAPVEKYFIG 276
+ + + + DP E L + ++ +V+P+W++ ++L P + Y +
Sbjct: 41 YMNERVQFVITAQEWDPNFEEALMENPSLA-----FVRPRWIYSCNEKQKLLPHQLYGVV 95
Query: 277 VTLPPHLYY 285
H ++
Sbjct: 96 PQAHHHHHH 104
Score = 36.8 bits (85), Expect = 0.001
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 183 YVQPQWVFDSINAKQLAPVEKYFIGVTLPPH 213
+V+P+W++ ++L P + Y + H
Sbjct: 71 FVRPRWIYSCNEKQKLLPHQLYGVVPQAHHH 101
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET:
SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A*
3sht_A 3shv_A*
Length = 199
Score = 50.5 bits (120), Expect = 1e-07
Identities = 24/199 (12%), Positives = 54/199 (27%), Gaps = 21/199 (10%)
Query: 86 KTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSIN----AKQLAPVEKYFIGVTLP 141
V + P + +++ Q+VD+ + I+ + + +G+
Sbjct: 11 TRTLVMTSMPSEKQNVVIQVVDK--LKGFSIAPDVCETTTHVLSGKPLRTLNVLLGIARG 68
Query: 142 PHLSSYYVQPQWVFDSINAKQLAPVEKYFIGVTLPPHMSSYYVQPQWVFDSINAKQLAPV 201
+ + WV S+ E + + P A
Sbjct: 69 CWV----LSYDWVLWSLELGHWISEEPFELSHHFPAAPLCRSECHLSAGPYRG-TLFADQ 123
Query: 202 EKYFIGVTLPPHLSPFID-TTKTEHYVPPEAED----PENERLRDPKNIQTLCKYYVQPQ 256
F+ P ++ + V + ++ Y+ +
Sbjct: 124 PVMFVSPASSPPVAKLCELVHLCGGRVSQVPRQASIVIGPYSGKKKATVK-----YLSEK 178
Query: 257 WVFDSINAKQLAPVEKYFI 275
WV DSI ++ E Y +
Sbjct: 179 WVLDSITQHKVCAPENYLL 197
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing,
coiled coil, DNA damage, DNA recombination, isopeptide
bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB:
2e2w_A*
Length = 263
Score = 50.3 bits (119), Expect = 3e-07
Identities = 26/191 (13%), Positives = 52/191 (27%), Gaps = 31/191 (16%)
Query: 149 VQPQWVFDSINAKQLAPVEKYFIGVTLPPHMSSYYVQPQWVFDSINAK-QLAPVEKYFIG 207
V+P W+ + K P + F+ P + + DS L +++ F G
Sbjct: 73 VKPAWLLECFKTKSFVPWQPRFMIHMCPSTKEHFAREYDCYGDSYFIDTDLNQLKEVFSG 132
Query: 208 VTLPPHLSPFIDTTKTEHYVPPEAEDPENERLRDPKNIQTLCKYYVQPQWVFDSINAKQL 267
+ +P + + D + + + + +
Sbjct: 133 IKNSNEQTPEEMASLIADLEYRYSWDCSPLSMFRRHTVYLDSYAVINDLSTKNEGTRLAI 192
Query: 268 APVEKYFIG----------VT--------------------LPPHLYYVQPQWVFDSINA 297
+E F G V+ ++ WV DSI+
Sbjct: 193 KALELRFHGAKVVSCLAEGVSHVIIGEDHSRVADFKAFRRTFKRKFKILKESWVTDSIDK 252
Query: 298 KQLAPVEKYFI 308
+L +Y I
Sbjct: 253 CELQEENQYLI 263
Score = 36.1 bits (82), Expect = 0.010
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 286 VQPQWVFDSINAKQLAPVEKYFIGVTLPPHLFPTSLNFPC 325
V+P W+ + K P + F+ P + + C
Sbjct: 73 VKPAWLLECFKTKSFVPWQPRFMIHMCPSTKEHFAREYDC 112
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A
{Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Length = 229
Score = 49.8 bits (118), Expect = 3e-07
Identities = 30/225 (13%), Positives = 56/225 (24%), Gaps = 49/225 (21%)
Query: 68 REPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQ 127
+ + ++ E TH I+ + +
Sbjct: 20 VMIVQKFAEKYRLALT-----------DVITEETTHVIIKTDAEFVCERT---------- 58
Query: 128 LAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYFIGVTLPPHMSSYYVQPQ 187
KYF+G+ + V WV SI ++L V ++ + + + Q
Sbjct: 59 ----LKYFLGIAGGKWI----VSYSWVIKSIQERKLLSVHEFEVKGDVVTGSNH---QGP 107
Query: 188 WVFDSINAKQLAPVEKYFIGVTLPP-----------------HLSPFIDTTKTEHYVPPE 230
K ++ Y P + H +
Sbjct: 108 RRSRESQEKLFEGLQIYCCEPFTNMPKDELERMLQLCGASVVKELPLLTRDTGAHPIVLV 167
Query: 231 AEDPENERLRDPKNIQTLCKYYVQPQWVFDSINAKQLAPVEKYFI 275
E P Q V WV DSI+ + ++ Y +
Sbjct: 168 QPSAWTEDNDCPDIGQLCKGRLVMWDWVLDSISVYRCRDLDAYLV 212
Score = 32.8 bits (74), Expect = 0.10
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 149 VQPQWVFDSINAKQLAPVEKYFIGVTLPPHMSSYYVQP 186
V WV DSI+ + ++ Y + S
Sbjct: 190 VMWDWVLDSISVYRCRDLDAYLVQNITCGRDGSEPQDS 227
Score = 27.4 bits (60), Expect = 6.3
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 271 EKYFIGVTLPPHLYYVQPQWVFDSINAKQLAPVEKYFI 308
KYF+G+ + V WV SI ++L V ++ +
Sbjct: 59 LKYFLGIAGGKWI--VSYSWVIKSIQERKLLSVHEFEV 94
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide
complex, antitumor protein; HET: SEP; 1.85A {Homo
sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A*
1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A
3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A
2ing_X 1oqa_A
Length = 214
Score = 48.6 bits (115), Expect = 5e-07
Identities = 28/225 (12%), Positives = 56/225 (24%), Gaps = 48/225 (21%)
Query: 68 REPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQ 127
+ R ++ E TH ++ + +
Sbjct: 17 FMLVYKFARKHHITLT-----------NLITEETTHVVMKTDAEFVCERT---------- 55
Query: 128 LAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYFIGVTLPPHMSSYYVQPQ 187
KYF+G+ + V WV SI +++ + + + P+
Sbjct: 56 ----LKYFLGIAGGKWV----VSYFWVTQSIKERKMLNEHDFEV--RGDVVNGRNHQGPK 105
Query: 188 WVFDSINAKQLAPVEKYFIGVTLPPHLSPFID-------TTKTEHYVPPEAEDPENERLR 240
+S + K +E G + E +
Sbjct: 106 RARESQDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVV 165
Query: 241 DPKNIQTLCKYY----------VQPQWVFDSINAKQLAPVEKYFI 275
P ++ V +WV DS+ Q ++ Y I
Sbjct: 166 QPDAWTEDNGFHAIGQMCEAPVVTREWVLDSVALYQCQELDTYLI 210
Score = 31.7 bits (71), Expect = 0.24
Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 11/125 (8%)
Query: 189 VFDSINAKQLAPVEKY--FIGVTLPPHLSPFIDTTKTEHYVPPEAEDPENERLRDPKNIQ 246
V + ++ V K+ +TL ++ +TT H V D E R K
Sbjct: 8 VVSGLTPEEFMLVYKFARKHHITLTNLITE--ETT---HVVMKT--DAEFVCERTLKYFL 60
Query: 247 TLC--KYYVQPQWVFDSINAKQLAPVEKYFIGVTLPPHLYYVQPQWVFDSINAKQLAPVE 304
+ K+ V WV SI +++ + + + + P+ +S + K +E
Sbjct: 61 GIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARESQDRKIFRGLE 120
Query: 305 KYFIG 309
G
Sbjct: 121 ICCYG 125
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase,
coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Length = 264
Score = 47.6 bits (112), Expect = 2e-06
Identities = 32/184 (17%), Positives = 57/184 (30%), Gaps = 24/184 (13%)
Query: 149 VQPQWVFDSINAKQLAPVEKYFIGVTLPPHMSSYYVQ----PQWVFDSINAKQLAPVEKY 204
+ P WV D I K+L +E + + + + I+ +L+ + K
Sbjct: 78 LHPNWVLDCIAYKRLILIEPNYCFNVSQKMRAVAEKRVDCLGDSFENDISETKLSSLYKS 137
Query: 205 FIGVTLPPHLSPFIDTTKTEH--------YVPPEAEDPENERLR------------DPKN 244
+ + L + + YVP E++ +
Sbjct: 138 QLSLPPMGELEIDSEVRRFPLFLFSNRIAYVPRRKISTEDDIIEMKIKLFGGKITDQQSL 197
Query: 245 IQTLCKYYVQPQWVFDSINAKQLAPVEKYFIGVTLPPHLYYVQPQWVFDSINAKQLAPVE 304
+ Y P D +N E+ T+P V P+WV SIN P E
Sbjct: 198 CNLIIIPYTDPILRKDCMNEVHEKIKEQIKASDTIPKIARVVAPEWVDHSINENCQVPEE 257
Query: 305 KYFI 308
+ +
Sbjct: 258 DFPV 261
Score = 33.7 bits (76), Expect = 0.055
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 243 KNIQTLCKYYVQPQWVFDSINAKQLAPVEKYFI 275
K + + P WV D I K+L +E +
Sbjct: 68 KALIDRGYDILHPNWVLDCIAYKRLILIEPNYC 100
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 5e-05
Identities = 35/236 (14%), Positives = 69/236 (29%), Gaps = 45/236 (19%)
Query: 19 EDAAEFDYFPTNSEADAEKVEEFKREAEKVRKLKRLFEGLKVFLNREVPREPLTLALRSF 78
+ A +D + + + E + + +++F+ L VF + L
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF-PPSAHIPTILL----- 392
Query: 79 GAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQLAPVEKYFIGV 138
+ W + D + +++ + KQ SI + L K
Sbjct: 393 --SLIWFDVI------KSDVMVVVNKLHKYSLVEKQPKESTI-SIPSIYLELKVKLENEY 443
Query: 139 TLPPH---LSSYYVQPQWVFDSINAKQLAPVEKYF---IGVTLPPHMSS------YYVQP 186
L H + Y FDS + +++YF IG H+ + +
Sbjct: 444 AL--HRSIVDHY--NIPKTFDS-DDLIPPYLDQYFYSHIGH----HLKNIEHPERMTLFR 494
Query: 187 QWVFDS--INAKQLAPVEKYFIGVTLPPHLSP-FIDTTKTEHYVPPEAEDPENERL 239
D + K + + + Y+ DP+ ERL
Sbjct: 495 MVFLDFRFLEQK----IRHDSTAWNASGSILNTLQQLKFYKPYICD--NDPKYERL 544
Score = 42.5 bits (99), Expect = 2e-04
Identities = 56/359 (15%), Positives = 96/359 (26%), Gaps = 101/359 (28%)
Query: 19 EDAAEFDYFPTNSEADAEKVEEFKREAEKVRKLKRLFEGLKVFLNREVPREPLTLALRS- 77
E+ +Y S E+ + + + RL+ +VF V R L LR
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143
Query: 78 -----------------FG-----AQVSWDKTL---FVGATF------PEDDESITHQIV 106
G V + F E++ +
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 107 DRPS-IGKQYISRVFDSINAKQLAPVEKYFIGVTL--PPHLSSYY----VQPQWVFDS-- 157
I + SR S N K + + L P+ + VQ +++
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263
Query: 158 INAKQLAPVEKYFIGVTLPPHMSSYYVQPQWVFDSINAKQLAPVEKYFIGVTLPPH---- 213
++ K L +T + + Q V D ++A + +TL P
Sbjct: 264 LSCKIL---------LT------TRFKQ---VTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 214 -LSPFIDTTKTEHYVPPEAED--PEN-----ERLRDPKNIQTLCKYYVQPQWVFDSINA- 264
L ++D + +P E P E +RD T + D +
Sbjct: 306 LLLKYLDCRPQD--LPREVLTTNPRRLSIIAESIRDGLA--TW-DNWKHVN--CDKLTTI 358
Query: 265 -----KQLAPVE--KYFI-------GVTLPPHLY--------YVQPQWVFDSINAKQLA 301
L P E K F +P L V + ++ L
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Score = 30.6 bits (68), Expect = 0.89
Identities = 50/384 (13%), Positives = 96/384 (25%), Gaps = 139/384 (36%)
Query: 36 EKVEEFKREAEKVRKLKRLFEGLKVFLNREVPREPLTLALRSFGAQVSWDKTLFVGATFP 95
E+++ + V RLF L V + FV
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK--------------------FVEEVLR 88
Query: 96 ED----DESITHQIVDRPSIGKQYISRVFDSINAKQLAPVEKYFIGVTLPPHLSSYYVQP 151
+ I + + + YI + N Q KY + +
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ--VFAKYNV------------SRL 134
Query: 152 QWVFDSINA-KQLAPVEKYFIGVTLPPH-M-------------SSYYVQPQ------WVF 190
Q A +L P + V + + SY VQ + W+
Sbjct: 135 QPYLKLRQALLELRPAK----NVLI--DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL- 187
Query: 191 DSINAKQLAPVEKYFIGVTLPPHLSPFIDTTKTEHYVPPEAEDPENERLR---------- 240
++ +P + L + P + LR
Sbjct: 188 -NL-KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 241 ---------DPKNIQTL---CKYYV--QPQWVFDSINAKQLA--PVEKYFIGVT------ 278
+ K CK + + + V D ++A ++ + + +T
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 279 ------------LPPHLYYVQPQWV----------------FDSINAKQLAPVEKYFIGV 310
LP + P+ + + +N +L + + + V
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 311 TLPPH----------LFPTSLNFP 324
L P +FP S + P
Sbjct: 366 -LEPAEYRKMFDRLSVFPPSAHIP 388
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger,
zinc-binding protein, ubiquitin LI antitumor protein;
1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Length = 210
Score = 40.9 bits (95), Expect = 2e-04
Identities = 27/227 (11%), Positives = 62/227 (27%), Gaps = 55/227 (24%)
Query: 68 REPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQ 127
++ L+ A+ E D ++TH +V ++
Sbjct: 15 QKMLSELAVILKAKKY-----------TEFDSTVTHVVVPGDAVQS-------------- 49
Query: 128 LAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKY------------------ 169
K +G+ + ++ +WV + K EKY
Sbjct: 50 ---TLKCMLGILNGCWI----LKFEWVKACLRRKVCEQEEKYEIPEGPRRSRLNREQLLP 102
Query: 170 --FIGVT---LPPHMSSYYVQPQWVFDSINAKQLAPVEKYFIGVTLPPHLSPFIDTTKTE 224
F G + + + L+ K VT + + ++
Sbjct: 103 KLFDGCYFYLWGTFKHHPKDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSD 162
Query: 225 HYVPPEAEDPENERLRDPKNIQTLCKYYVQPQWVFDSINAKQLAPVE 271
+ E+ P+ ++ + W D + + +L P++
Sbjct: 163 QRFCTQYIIYEDLCNYHPERVRQGKVWKAPSSWFIDCVMSFELLPLD 209
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing
factor, phosphoprotein, polymorphism, proto-oncogene,
structural genomics; 1.48A {Homo sapiens}
Length = 112
Score = 36.0 bits (83), Expect = 0.003
Identities = 21/137 (15%), Positives = 37/137 (27%), Gaps = 36/137 (26%)
Query: 42 KREAEKVRKLKRLFEGLKVFLNREVPREPLTLALRSFGAQVSWDKTLFVGATF-PEDDES 100
RE + + F+ + E + + T G + P DE
Sbjct: 10 GRENLYFQGVP-PFQDCILSFLGFSDEEKTNM----------EEMTEMQGGKYLPLGDER 58
Query: 101 ITHQIVDRPSIGKQYISRVFDSINAKQLAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINA 160
TH +V+ + P +K ++ V+ +W + SI
Sbjct: 59 CTHLVVEENIVKD------------LPFEPSKKLYV------------VKQEWFWGSIQM 94
Query: 161 KQLAPVEKYFIGVTLPP 177
A Y P
Sbjct: 95 DARAGETMYLYEKANTP 111
Score = 27.9 bits (62), Expect = 1.7
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 184 VQPQWVFDSINAKQLAPVEKYFIGVTLPP 212
V+ +W + SI A Y P
Sbjct: 83 VKQEWFWGSIQMDARAGETMYLYEKANTP 111
Score = 27.9 bits (62), Expect = 1.7
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 253 VQPQWVFDSINAKQLAPVEKYFIGVTLPP 281
V+ +W + SI A Y P
Sbjct: 83 VKQEWFWGSIQMDARAGETMYLYEKANTP 111
Score = 27.9 bits (62), Expect = 1.7
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 286 VQPQWVFDSINAKQLAPVEKYFIGVTLPP 314
V+ +W + SI A Y P
Sbjct: 83 VKQEWFWGSIQMDARAGETMYLYEKANTP 111
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA
replication inhibitor, phosphoprotein, checkpoint
signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe}
PDB: 2vxc_A*
Length = 241
Score = 36.4 bits (83), Expect = 0.007
Identities = 24/167 (14%), Positives = 45/167 (26%), Gaps = 26/167 (15%)
Query: 88 LFVGATF---------PEDDESITHQIVDRPSIGKQYISRVFDSINAKQLAPVEKYFIGV 138
+F F D ++ + D G + + +K
Sbjct: 2 IFDDCVFAFSGPVHEDAYDRSALETVVQDH---GGLVLDTGLRPLFNDPFKSKQKKL--- 55
Query: 139 TLPPHLSSYYVQPQWVFDSINAKQLAPVEKYFIGVTLPPHMSSYYVQPQWVFDSINAKQL 198
HL W + + + KY + V PQ++ + ++
Sbjct: 56 ---RHLKPQKRSKSWNQAFVVSDTFSRKVKYLEALAFNIPC----VHPQFIKQCLKMNRV 108
Query: 199 APVEKYFIGVTLPPHLSPFIDTTKTEHYVPPEAEDPENERLRDPKNI 245
Y L S +D T ++ P + D +RL K
Sbjct: 109 VDFSPY----LLASGYSHRLDCTLSQRIEPFDTTDSLYDRLLARKGP 151
Score = 30.3 bits (67), Expect = 0.62
Identities = 18/124 (14%), Positives = 36/124 (29%), Gaps = 19/124 (15%)
Query: 54 LFEGLKVFL------NREVPREPLTLALRSFGAQV--SWDKTLFVGATFPEDDESITHQI 105
+F+ VF R L ++ G V + + LF D +
Sbjct: 2 IFDDC-VFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLF------NDPFKSKQKK 54
Query: 106 VDRPSIGKQYISRVFDSINAKQLAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAP 165
+ K+ S + + + KY + V PQ++ + ++
Sbjct: 55 LRHLKPQKRSKSWNQAFVVSDTFSRKVKYLEALAFNIPC----VHPQFIKQCLKMNRVVD 110
Query: 166 VEKY 169
Y
Sbjct: 111 FSPY 114
Score = 28.7 bits (63), Expect = 2.3
Identities = 9/72 (12%), Positives = 21/72 (29%), Gaps = 2/72 (2%)
Query: 235 ENERLRDPKNIQTLCKYYVQPQWVFDSINAKQLAPVEKYFIGVTLPPHLYYVQPQWVFDS 294
+ K ++ L W + + + KY + V PQ++
Sbjct: 45 NDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTFSRKVKYLEALAFNIPC--VHPQFIKQC 102
Query: 295 INAKQLAPVEKY 306
+ ++ Y
Sbjct: 103 LKMNRVVDFSPY 114
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET:
SEP; 2.15A {Homo sapiens}
Length = 219
Score = 36.1 bits (83), Expect = 0.008
Identities = 27/211 (12%), Positives = 60/211 (28%), Gaps = 62/211 (29%)
Query: 91 GATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQLAPVEKYFIGVTLPPHLSSYYVQ 150
G E + TH I + + K+ +++ H+ V
Sbjct: 40 GGEVAESAQKCTHLIASKVTRT-------------------VKFLTAISVVKHI----VT 76
Query: 151 PQWVFDSINAKQLAPVEKYFIGVTLPPHMSSYYVQPQWVFDSINAKQLAPVEKYFIGVTL 210
P+W+ + ++ + Y + + + F + + A V F
Sbjct: 77 PEWLEECFRCQKFIDEQNYIL--------RDAEAEVLFSFSLEESLKRAHVSPLFKAKYF 128
Query: 211 PPHLSPFIDTTKTE-------------HYVPPEAEDPENERLRDPKNI--------QTLC 249
+++P I + + P + E+++ I LC
Sbjct: 129 --YITPGICPSLSTMKAIVECAGGKVLSKQPSFRKLMEHKQNSSLSEIILISCENDLHLC 186
Query: 250 KYY-------VQPQWVFDSINAKQLAPVEKY 273
+ Y ++V + + L E Y
Sbjct: 187 REYFARGIDVHNAEFVLTGVLTQTLDY-ESY 216
Score = 31.4 bits (71), Expect = 0.31
Identities = 7/45 (15%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 264 AKQLAPVEKYFIGVTLPPHLYYVQPQWVFDSINAKQLAPVEKYFI 308
A ++ K+ +++ H+ V P+W+ + ++ + Y +
Sbjct: 55 ASKVTRTVKFLTAISVVKHI--VTPEWLEECFRCQKFIDEQNYIL 97
Score = 29.9 bits (67), Expect = 0.83
Identities = 7/53 (13%), Positives = 19/53 (35%)
Query: 248 LCKYYVQPQWVFDSINAKQLAPVEKYFIGVTLPPHLYYVQPQWVFDSINAKQL 300
+ K+ V P+W+ + ++ + Y + L+ + + L
Sbjct: 70 VVKHIVTPEWLEECFRCQKFIDEQNYILRDAEAEVLFSFSLEESLKRAHVSPL 122
Score = 29.9 bits (67), Expect = 1.00
Identities = 22/152 (14%), Positives = 46/152 (30%), Gaps = 32/152 (21%)
Query: 23 EFDYFPTNSEADAEKVEEFKREAEKVR---KLKRLFEGLKVFLNREV--PREPLTLALRS 77
E +Y DAE F E+ + LF+ ++ + + +
Sbjct: 92 EQNYILR----DAEAEVLFSFSLEESLKRAHVSPLFKAKYFYITPGICPSLSTMKAIVEC 147
Query: 78 FGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQLAPVEKYFIG 137
G +V + F + + S++ I+ IS D ++ G
Sbjct: 148 AGGKVLSKQPSFRKLMEHKQNSSLSEIIL---------ISCENDLHLCREYFA-----RG 193
Query: 138 VTLPPHLSSYYVQPQWVFDSINAKQLAPVEKY 169
+ + ++V + + L E Y
Sbjct: 194 IDV--------HNAEFVLTGVLTQTLDY-ESY 216
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains
histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens}
PDB: 2azm_A* 3k05_A* 2ado_A
Length = 209
Score = 35.8 bits (82), Expect = 0.009
Identities = 22/200 (11%), Positives = 57/200 (28%), Gaps = 46/200 (23%)
Query: 91 GATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQLAPVEKYFIGVTLPPHLSSYYVQ 150
G + +H + DR K+ + + +
Sbjct: 33 GGSLAGSAAEASHLVTDRIR-------------------RTVKFLCALGRGIPI----LS 69
Query: 151 PQWVFDSINAKQLAPVEKYFIGVTLPPHMSSYYVQPQWVFDSINAKQLAPVEKYFIGVTL 210
W+ S A P ++Y + T P ++ Q ++L + ++ +
Sbjct: 70 LDWLHQSRKAGFFLPPDEYVV--TDPEQEKNFGFSLQDALSRARERRLLEGYEIYVTPGV 127
Query: 211 PP---------------HLSPFIDTTKTEHYVPPEAEDPENERLRDPKNIQTLCKYYVQP 255
P +L + K + V +D + + + + P
Sbjct: 128 QPPPPQMGEIISCCGGTYLPSMPRSYKPQRVVITCPQDFPHCSIPLRVGLPL-----LSP 182
Query: 256 QWVFDSINAKQLAPVEKYFI 275
+++ + ++ P E + +
Sbjct: 183 EFLLTGVLKQEAKP-EAFVL 201
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein
binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo
sapiens} PDB: 3al3_A*
Length = 235
Score = 35.9 bits (82), Expect = 0.010
Identities = 24/162 (14%), Positives = 50/162 (30%), Gaps = 32/162 (19%)
Query: 17 EEEDAAEFDYFPTNSEADAEKVEEFKREAEKVRK------LKRLFEGLKVFLNREVPREP 70
E ++ D + R +K+++ ++ F G KV L+ + RE
Sbjct: 92 EWGSSSILDVLTGINVQQRRLALAAMRWRKKIQQRQESGIVEGAFSGWKVILHVDQSREA 151
Query: 71 -LTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQLA 129
L+S GA+V + + TH D + A+ +
Sbjct: 152 GFKRLLQSGGAKVLPGHS-------VPLFKEATHLFSDLNKLKPDDSGVNIAEAAAQNV- 203
Query: 130 PVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYFI 171
++ +++ D + + VE Y +
Sbjct: 204 YC-----------------LRTEYIADYLMQESPPHVENYCL 228
Score = 32.4 bits (73), Expect = 0.13
Identities = 31/242 (12%), Positives = 58/242 (23%), Gaps = 69/242 (28%)
Query: 68 REPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQ 127
R + G V D + TH +V P
Sbjct: 22 RIDYCHLIEKLGGLVIEK---------QCFDPTCTHIVVGHPLRN--------------- 57
Query: 128 LAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYFIGVTLPPHMSSY----- 182
EKY V + + ++ A E Y G + + +
Sbjct: 58 ----EKYLASVAAGKWV----LHRSYLEACRTAGHFVQEEDYEWGSSSILDVLTGINVQQ 109
Query: 183 ----YVQPQWVFDSINAKQLAPVEKYFIG--VTLPPH---------------------LS 215
+W ++ VE F G V L S
Sbjct: 110 RRLALAAMRWRKKIQQRQESGIVEGAFSGWKVILHVDQSREAGFKRLLQSGGAKVLPGHS 169
Query: 216 PFIDTTKTEHYVPPEAEDPENER--LRDPKNIQTLCKYYVQPQWVFDSINAKQLAPVEKY 273
+ T + P++ + + C ++ +++ D + + VE Y
Sbjct: 170 VPLFKEATHLFSDLNKLKPDDSGVNIAEAAAQNVYC---LRTEYIADYLMQESPPHVENY 226
Query: 274 FI 275
+
Sbjct: 227 CL 228
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 109
Score = 33.7 bits (77), Expect = 0.016
Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 25/96 (26%)
Query: 84 WDKTLFVGATF-PEDDESITHQIVDRPSIGKQYISRVFDSINAKQLAPVEKYFIGVTLPP 142
+ T G ++ P DE TH IV+ + K P +K F+
Sbjct: 32 EEMTEMQGGSYLPVGDERCTHLIVEENT-VKDL-----------PFEPSKKLFV------ 73
Query: 143 HLSSYYVQPQWVFDSINAKQLAPVEKYFIGVTLPPH 178
V+ +W + SI A Y P
Sbjct: 74 ------VKQEWFWGSIQMDARAGETMYLYEKANTPE 103
Score = 31.8 bits (72), Expect = 0.070
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 282 HLYYVQPQWVFDSINAKQLAPVEKYFIGVTLPPHLFPTS 320
L+ V+ +W + SI A Y P P+S
Sbjct: 70 KLFVVKQEWFWGSIQMDARAGETMYLYEKANTPESGPSS 108
Score = 30.7 bits (69), Expect = 0.21
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 184 VQPQWVFDSINAKQLAPVEKYFIGVTLPPHLSP 216
V+ +W + SI A Y P P
Sbjct: 74 VKQEWFWGSIQMDARAGETMYLYEKANTPESGP 106
Score = 28.0 bits (62), Expect = 1.6
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 253 VQPQWVFDSINAKQLAPVEKYFIGVTLPPH 282
V+ +W + SI A Y P
Sbjct: 74 VKQEWFWGSIQMDARAGETMYLYEKANTPE 103
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III,
poly(ADP-ribose) polymerase-1, DNA polymerase beta,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 129
Score = 32.5 bits (74), Expect = 0.052
Identities = 23/136 (16%), Positives = 41/136 (30%), Gaps = 37/136 (27%)
Query: 39 EEFKREAEKVRKLKRLFEGLKVFLN--REVPREPLTLALRSFGAQVSWDKTLFVGATFPE 96
E +R +L ++ +G+ V L+ + R L GA+ D T
Sbjct: 7 GEPRRPRAGPEELGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWT--------- 57
Query: 97 DDESITHQIVDRPSIGKQYISRVFDSINAKQLAPVEKYFIGVTLPPHLSSYYVQPQWVFD 156
TH I + +Y I V+ +WV D
Sbjct: 58 --RDSTHLICAFAN-TPKY-----------SQVLGLGGRI------------VRKEWVLD 91
Query: 157 SINAKQLAPVEKYFIG 172
++ P ++Y +
Sbjct: 92 CHRMRRRLPSQRYLMA 107
Score = 29.8 bits (67), Expect = 0.52
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 184 VQPQWVFDSINAKQLAPVEKYFIG 207
V+ +WV D ++ P ++Y +
Sbjct: 84 VRKEWVLDCHRMRRRLPSQRYLMA 107
Score = 29.8 bits (67), Expect = 0.52
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 253 VQPQWVFDSINAKQLAPVEKYFIG 276
V+ +WV D ++ P ++Y +
Sbjct: 84 VRKEWVLDCHRMRRRLPSQRYLMA 107
Score = 29.8 bits (67), Expect = 0.52
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 286 VQPQWVFDSINAKQLAPVEKYFIG 309
V+ +WV D ++ P ++Y +
Sbjct: 84 VRKEWVLDCHRMRRRLPSQRYLMA 107
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase,
nonhomologous END joining (NHEJ), DNA damage, DNA
repair, DNA replication, DNA synthesis; HET: DNA; NMR
{Homo sapiens}
Length = 106
Score = 31.5 bits (71), Expect = 0.10
Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 33/122 (27%)
Query: 54 LFEGLKVFLNRE---VPR-EPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRP 109
L+ + R R E + G Q+ P +TH +VD
Sbjct: 11 WLSSLRAHVVRTGIGRARAELFEKQIVQHGGQLC-----------PAQGPGVTHIVVD-- 57
Query: 110 SIGKQYISRVFDSINAKQLAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKY 169
+ ++ ++ + + LPP V+ W+ + ++L V +
Sbjct: 58 -----------EGMDYERALRLLRL---PQLPPGAQ--LVKSAWLSLCLQERRLVDVAGF 101
Query: 170 FI 171
I
Sbjct: 102 SI 103
Score = 28.8 bits (64), Expect = 0.86
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 279 LPPHLYYVQPQWVFDSINAKQLAPVEKYFI 308
LPP V+ W+ + ++L V + I
Sbjct: 74 LPPGAQLVKSAWLSLCLQERRLVDVAGFSI 103
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.11
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 8/37 (21%)
Query: 46 EKVRKLKRLFEGLKVFLNREVPREPLTLALRSFGAQV 82
EK + LK+L LK++ + P LA++ A +
Sbjct: 18 EK-QALKKLQASLKLYADDSAP----ALAIK---ATM 46
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair,
RAD9, DNA binding protein; HET: DNA; 2.40A {Homo
sapiens} PDB: 2xnk_A* 2xnh_A*
Length = 298
Score = 32.0 bits (72), Expect = 0.19
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 6/61 (9%)
Query: 213 HLSPFIDTTKTEHYVPPEAEDPENERLRDPKNIQTLCKYYVQPQWVFDSINAKQLAPVEK 272
+ + H + E + + E + N+ V QW FDSI
Sbjct: 228 QYMGQLKMNECTHLIVQEPKGQKYECAKR-WNVHC-----VTTQWFFDSIEKGFCQDESI 281
Query: 273 Y 273
Y
Sbjct: 282 Y 282
Score = 30.9 bits (69), Expect = 0.53
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 6/42 (14%)
Query: 282 HLYYVQPQWVFDSINAKQLAPVEKYFIGVTLPPHLFPTSLNF 323
+++ V QW FDSI Y P +L
Sbjct: 258 NVHCVTTQWFFDSIEKGFCQDESIY------KTEPRPEALEH 293
Score = 30.5 bits (68), Expect = 0.61
Identities = 8/21 (38%), Positives = 8/21 (38%)
Query: 149 VQPQWVFDSINAKQLAPVEKY 169
V QW FDSI Y
Sbjct: 262 VTTQWFFDSIEKGFCQDESIY 282
Score = 30.5 bits (68), Expect = 0.61
Identities = 8/21 (38%), Positives = 8/21 (38%)
Query: 184 VQPQWVFDSINAKQLAPVEKY 204
V QW FDSI Y
Sbjct: 262 VTTQWFFDSIEKGFCQDESIY 282
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat,
phosphoserine binding domain, DNA repair, cell division,
mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe}
PDB: 3l40_A*
Length = 220
Score = 31.5 bits (71), Expect = 0.28
Identities = 23/207 (11%), Positives = 53/207 (25%), Gaps = 47/207 (22%)
Query: 91 GATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQLAPVEKYFIGVTLPPHLSSYYVQ 150
+ + TH I R K+ + P + V
Sbjct: 29 DMSITSNPSKCTHLIAPRILRT-------------------SKFLCSIPYGPCV----VT 65
Query: 151 PQWVFDSINAKQLAPVEKYFI---------GVTLPPHMSSYYVQPQWVFDS----INAKQ 197
W+ + ++ E Y + G TL + Q + + + +K
Sbjct: 66 MDWINSCLKTHEIVDEEPYLLNDPEKELELGCTLESALKRARAQGPSLLEDYVVYLTSKT 125
Query: 198 LAPVEKYFIG----------VTLPPHLSPFIDTTKTEH-YVPPEAEDPENERLRDPKNIQ 246
+AP + TL + + + + ED Q
Sbjct: 126 VAPENVPAVISIVKSNGGVCSTLNVYNKRLARHLEDGNVVLITCNEDSHIWTNFLDNASQ 185
Query: 247 TLCKYYVQPQWVFDSINAKQLAPVEKY 273
+ W+ ++ +++ ++
Sbjct: 186 NKTIFLQNYDWLIKTVLRQEIDVNDRI 212
Score = 30.7 bits (69), Expect = 0.46
Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Query: 271 EKYFIGVTLPPHLYYVQPQWVFDSINAKQLAPVEKYFIGVTLPPHLFPTSL 321
K+ + P + V W+ + ++ E Y + +L
Sbjct: 51 SKFLCSIPYGPCV--VTMDWINSCLKTHEIVDEEPYLLNDPEKELELGCTL 99
Score = 29.9 bits (67), Expect = 0.93
Identities = 17/152 (11%), Positives = 44/152 (28%), Gaps = 25/152 (16%)
Query: 23 EFDYFPTNSEADAEKVEEFKREAEKVRK-LKRLFEGLKVFLNREV----PREPLTLALRS 77
E Y + E + E + ++ R L E V+L + + ++S
Sbjct: 81 EEPYLLNDPEKELELGCTLESALKRARAQGPSLLEDYVVYLTSKTVAPENVPAVISIVKS 140
Query: 78 FGAQVSWDKTLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQLAPVEKYFIG 137
G S TL V + ++ + + D+ + + +
Sbjct: 141 NGGVCS---TLNVYNKRLARHLEDGNVVLITCNEDSHIWTNFLDNASQNKTIFL------ 191
Query: 138 VTLPPHLSSYYVQPQWVFDSINAKQLAPVEKY 169
W+ ++ +++ ++
Sbjct: 192 -----------QNYDWLIKTVLRQEIDVNDRI 212
Score = 28.0 bits (62), Expect = 4.1
Identities = 4/29 (13%), Positives = 9/29 (31%)
Query: 248 LCKYYVQPQWVFDSINAKQLAPVEKYFIG 276
V W+ + ++ E Y +
Sbjct: 59 YGPCVVTMDWINSCLKTHEIVDEEPYLLN 87
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair,
cell cycle checkpoints, acetylation, cytoplasm,
cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens}
PDB: 3pd7_A* 3jve_A*
Length = 107
Score = 29.8 bits (67), Expect = 0.34
Identities = 16/119 (13%), Positives = 31/119 (26%), Gaps = 34/119 (28%)
Query: 53 RLFEGLKVFLNREVP--REPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPS 110
+ + V +++++ + L S GA E++TH I
Sbjct: 14 KPLHKVVVCVSKKLSKKQSELNGIAASLGADYRRSFD-----------ETVTHFIY---- 58
Query: 111 IGKQYISRVFDSINAKQLAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKY 169
+ +Y H+ V W+ D + P Y
Sbjct: 59 -------------QGRPNDTNREYKSVKERGVHI----VSEHWLLDCAQECKHLPESLY 100
Score = 29.1 bits (65), Expect = 0.62
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 220 TTKTEHYVPPEAEDPENERLRDPKNIQTLCKYYVQPQWVFDSINAKQLAPVEKY 273
H++ + N+ R+ K+++ + V W+ D + P Y
Sbjct: 50 DETVTHFI---YQGRPNDTNREYKSVKERGVHIVSEHWLLDCAQECKHLPESLY 100
Score = 26.8 bits (59), Expect = 4.4
Identities = 5/21 (23%), Positives = 7/21 (33%)
Query: 184 VQPQWVFDSINAKQLAPVEKY 204
V W+ D + P Y
Sbjct: 80 VSEHWLLDCAQECKHLPESLY 100
Score = 26.8 bits (59), Expect = 4.4
Identities = 5/21 (23%), Positives = 7/21 (33%)
Query: 286 VQPQWVFDSINAKQLAPVEKY 306
V W+ D + P Y
Sbjct: 80 VSEHWLLDCAQECKHLPESLY 100
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker
complexed with non-BRCT protein, three-helix bundle,
parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4
c.15.1.4 PDB: 1gzh_B
Length = 259
Score = 29.8 bits (66), Expect = 1.1
Identities = 36/255 (14%), Positives = 66/255 (25%), Gaps = 51/255 (20%)
Query: 52 KRLFEGLKVFLNREVPREPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRPSI 111
K LF G FL LT+A S + E++E + ++
Sbjct: 13 KTLFLG-YAFL--------LTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYT 63
Query: 112 GKQYIS---RVFDSINAKQLAPVE-------------KYFIGVTLPPHLSSYYVQPQWVF 155
Q + + + N Q KYF+ + V WV
Sbjct: 64 ESQLRAGAGYILEDFNEAQCNTAYQCLLIADQHCRTRKYFLCLASGIPC----VSHVWVH 119
Query: 156 DSINAKQLAPVEKYFIGVTLPPHMSSYYVQPQ--------WVFDSINAKQLAPVEKYFI- 206
DS +A QL Y + V + +Q I
Sbjct: 120 DSCHANQLQNYRNYLLPAGYSLEEQRILDWQPRENPFQNLKVLLVSDQQQNFLELWSEIL 179
Query: 207 ----GVTLPPH----LSPFIDTTKTEHYVPPEAEDPENERLRDPKNIQTLCKYYVQPQWV 258
++ H + I + V + + + + V +WV
Sbjct: 180 MTGGAASVKQHHSSAHNKDIALGVFDVVVTDPSCPASVLKCAEALQLPV-----VSQEWV 234
Query: 259 FDSINAKQLAPVEKY 273
+ + +++
Sbjct: 235 IQCLIVGERIGFKQH 249
Score = 29.4 bits (65), Expect = 1.3
Identities = 19/140 (13%), Positives = 36/140 (25%), Gaps = 20/140 (14%)
Query: 184 VQPQWVFDSINAKQLAPVEKYFIGVTLPPHLSPFIDTTKTEH-------YVPPEAEDPEN 236
V WV DS +A QL Y + +D E+ + + +
Sbjct: 113 VSHVWVHDSCHANQLQNYRNYLLPAGYSLEEQRILDWQPRENPFQNLKVLLVSDQQQNFL 172
Query: 237 ERLRDPKNIQTLC-KYYVQPQWVFDSINAKQLAPVEKYFIGVTLPPHLYY---------V 286
E I V+ L + + P + V
Sbjct: 173 ELW---SEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDPSCPASVLKCAEALQLPVV 229
Query: 287 QPQWVFDSINAKQLAPVEKY 306
+WV + + +++
Sbjct: 230 SQEWVIQCLIVGERIGFKQH 249
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 1.6
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 17 EEEDAAEFDYFPTNSEADAEKVEEF-KREAEKVRKLK---RLFEGLKVFL-NRE 65
+E DAA E + +EE+ +R++E+V K K R+ + K F +
Sbjct: 99 QELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD--KAFYQQPD 150
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein
interactions, XRCC1 domain, DNA binding protein; HET:
DNA MSE; 1.65A {Homo sapiens} PDB: 3pc8_C* 1imo_A*
1in1_A* 3qvg_A*
Length = 88
Score = 27.3 bits (60), Expect = 2.2
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 280 PPHLYYVQPQWVFDSINAKQL 300
P V P+W++ I ++L
Sbjct: 64 NPAAQQVSPEWIWACIRKRRL 84
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide
binding, hydrogenase maturation factor transferase; HET:
ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A*
3ttf_A* 3ttd_A 3tsq_A
Length = 657
Score = 27.4 bits (61), Expect = 7.1
Identities = 2/20 (10%), Positives = 6/20 (30%)
Query: 48 VRKLKRLFEGLKVFLNREVP 67
+L + + +P
Sbjct: 616 RARLAHYLADFTLLFPQSLP 635
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.416
Gapped
Lambda K H
0.267 0.0507 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,237,246
Number of extensions: 314933
Number of successful extensions: 906
Number of sequences better than 10.0: 1
Number of HSP's gapped: 852
Number of HSP's successfully gapped: 89
Length of query: 325
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 231
Effective length of database: 4,077,219
Effective search space: 941837589
Effective search space used: 941837589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.3 bits)