RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14410
(325 letters)
>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 96
Score = 55.9 bits (134), Expect = 9e-11
Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 30/122 (24%)
Query: 50 KLKRLFEGLKVFLNREVPREPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDRP 109
+L F+G FL E P + +R A F G + + I +
Sbjct: 1 ELPDFFQGKHFFLYGEFPGDERRKLIRYVTA--------FNGELEDYMSDRVQFVITAQE 52
Query: 110 SIGKQYISRVFDSINAKQLAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKY 169
+ + + S +V+P+W++ ++L P + Y
Sbjct: 53 WDPSFEEALMD----------------------NPSLAFVRPRWIYSCNEKQKLLPHQLY 90
Query: 170 FI 171
+
Sbjct: 91 GV 92
Score = 35.1 bits (80), Expect = 0.002
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 271 EKYFIGVTLPPHLYYVQPQWVFDSINAKQLAPVEKYFI 308
+ + P L +V+P+W++ ++L P + Y +
Sbjct: 55 PSFEEALMDNPSLAFVRPRWIYSCNEKQKLLPHQLYGV 92
Score = 31.6 bits (71), Expect = 0.030
Identities = 6/25 (24%), Positives = 15/25 (60%)
Query: 251 YYVQPQWVFDSINAKQLAPVEKYFI 275
+V+P+W++ ++L P + Y +
Sbjct: 68 AFVRPRWIYSCNEKQKLLPHQLYGV 92
>d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 50.3 bits (120), Expect = 6e-09
Identities = 17/118 (14%), Positives = 35/118 (29%), Gaps = 43/118 (36%)
Query: 49 RKLKRLFEGLKVFLNREVP-REPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVD 107
+ L +F G++++L P L +F + + D S TH +
Sbjct: 11 KVLLDIFTGVRLYLPPSTPDFSRLRRYFVAFDGDLVQE----------FDMTSATHVLGS 60
Query: 108 RPSIGKQYISRVFDSINAKQLAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAP 165
R + ++ V P+W++ I ++L
Sbjct: 61 R--------------------------------DKNPAAQQVSPEWIWACIRKRRLVA 86
Score = 33.0 bits (75), Expect = 0.008
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 176 PPHMSSYYVQPQWVFDSINAKQLAP 200
+ ++ V P+W++ I ++L
Sbjct: 62 DKNPAAQQVSPEWIWACIRKRRLVA 86
Score = 32.2 bits (73), Expect = 0.015
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 252 YVQPQWVFDSINAKQLAP 269
V P+W++ I ++L
Sbjct: 69 QVSPEWIWACIRKRRLVA 86
Score = 32.2 bits (73), Expect = 0.015
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 285 YVQPQWVFDSINAKQLAP 302
V P+W++ I ++L
Sbjct: 69 QVSPEWIWACIRKRRLVA 86
>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein,
BRCA1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 50.2 bits (119), Expect = 9e-09
Identities = 20/124 (16%), Positives = 38/124 (30%), Gaps = 28/124 (22%)
Query: 52 KRLFEGLKVFLNRE---VPREPLTLALRSFGAQVSWDKTLFVGATFPEDDESITHQIVDR 108
+++F GL++ +P + L ++ GA V + + F T +
Sbjct: 1 RKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTLGT-GVHPIVVVQPDAWT 59
Query: 109 PSIGKQYISRVFDSINAKQLAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEK 168
G I + + V +WV DS+ Q ++
Sbjct: 60 EDNGFHAIGQ------------------------MCEAPVVTREWVLDSVALYQCQELDT 95
Query: 169 YFIG 172
Y I
Sbjct: 96 YLIP 99
Score = 34.8 bits (79), Expect = 0.002
Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 3/93 (3%)
Query: 115 YISRVFDSINAKQLAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYFIGVT 174
F ++ QL + + + S I Q +
Sbjct: 10 CCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTLGTGVH---PIVVVQPDAWTEDNGFHA 66
Query: 175 LPPHMSSYYVQPQWVFDSINAKQLAPVEKYFIG 207
+ + V +WV DS+ Q ++ Y I
Sbjct: 67 IGQMCEAPVVTREWVLDSVALYQCQELDTYLIP 99
Score = 34.0 bits (77), Expect = 0.004
Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 3/69 (4%)
Query: 208 VTLPPHLSPFIDTTKTEHYVPPEAEDPENERLRDPKNIQTLCKYYVQPQWVFDSINAKQL 267
V V P+A +N + + V +WV DS+ Q
Sbjct: 34 VVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPV---VTREWVLDSVALYQC 90
Query: 268 APVEKYFIG 276
++ Y I
Sbjct: 91 QELDTYLIP 99
Score = 34.0 bits (77), Expect = 0.005
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 281 PHLYYVQPQWVFDSINAKQLAPVEKYFIG 309
V +WV DS+ Q ++ Y I
Sbjct: 71 CEAPVVTREWVLDSVALYQCQELDTYLIP 99
>d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1,
TopBP1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 132
Score = 44.8 bits (105), Expect = 1e-06
Identities = 19/145 (13%), Positives = 38/145 (26%), Gaps = 35/145 (24%)
Query: 29 TNSEADAEKVEEFKREAEKVRKLKRLFEGLKVFLNREVP--REPLTLALRSFGAQVSWDK 86
NS+ + + + + L +G +++L + L + S G
Sbjct: 15 LNSKLEPTLENLENLDVSAFQAPEDLLDGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQL 74
Query: 87 TLFVGATFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQLAPVEKYFIGVTLPPHLSS 146
E +TH IV KQ +
Sbjct: 75 N-----------EDVTHVIVGDYDDEL------------KQFWNKSAHRP---------- 101
Query: 147 YYVQPQWVFDSINAKQLAPVEKYFI 171
+ V +W+ + + + E Y
Sbjct: 102 HVVGAKWLLECFSKGYMLSEEPYIH 126
Score = 35.5 bits (81), Expect = 0.002
Identities = 6/56 (10%), Positives = 16/56 (28%), Gaps = 4/56 (7%)
Query: 220 TTKTEHYVPPEAEDPENERLRDPKNIQTLCKYYVQPQWVFDSINAKQLAPVEKYFI 275
H + + +D + + V +W+ + + + E Y
Sbjct: 75 NEDVTHVIVGDYDDELKQFWNK----SAHRPHVVGAKWLLECFSKGYMLSEEPYIH 126
Score = 34.8 bits (79), Expect = 0.004
Identities = 5/38 (13%), Positives = 11/38 (28%)
Query: 271 EKYFIGVTLPPHLYYVQPQWVFDSINAKQLAPVEKYFI 308
E + V +W+ + + + E Y
Sbjct: 89 ELKQFWNKSAHRPHVVGAKWLLECFSKGYMLSEEPYIH 126
Score = 32.1 bits (72), Expect = 0.031
Identities = 4/25 (16%), Positives = 10/25 (40%)
Query: 182 YYVQPQWVFDSINAKQLAPVEKYFI 206
+ V +W+ + + + E Y
Sbjct: 102 HVVGAKWLLECFSKGYMLSEEPYIH 126
>d1gnta_ e.26.1.1 (A:) Hybrid cluster protein (prismane protein)
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 553
Score = 27.8 bits (62), Expect = 2.0
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 29 TNSEADAEKVEEFKREAEKVR-KLKRLFEGLKVFLNREVPREPLTLALRSFGAQVSWD-- 85
TN+ D + E E R KL+ F + N + EPL A G ++
Sbjct: 71 TNANWDDARFEAMISEGLARRDKLRNAFLAVYKAKNGKDFSEPLPEAATWTGDSTAFAEK 130
Query: 86 -KTLFVGATFPEDDESITHQIV 106
K++ + AT ED S+ ++
Sbjct: 131 AKSVGILATENEDVRSLRELLI 152
>d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 153
Score = 26.5 bits (58), Expect = 2.8
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 271 EKYFIGVTLPPHLYYVQPQWVFDSINAKQLAPVEKYFI 308
KYF+ + V WV DS +A QL Y +
Sbjct: 100 RKYFLCLASGIPC--VSHVWVHDSCHANQLQNYRNYLL 135
Score = 25.7 bits (56), Expect = 4.9
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 167 EKYFIGVTLPPHMSSYYVQPQWVFDSINAKQLAPVEKYFI 206
KYF+ + V WV DS +A QL Y +
Sbjct: 100 RKYFLCLASGIPC----VSHVWVHDSCHANQLQNYRNYLL 135
Score = 25.7 bits (56), Expect = 5.1
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 132 EKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYFI 171
KYF+ + V WV DS +A QL Y +
Sbjct: 100 RKYFLCLASGIPC----VSHVWVHDSCHANQLQNYRNYLL 135
Score = 25.7 bits (56), Expect = 6.0
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 249 CKYYVQPQWVFDSINAKQLAPVEKYFI 275
V WV DS +A QL Y +
Sbjct: 109 GIPCVSHVWVHDSCHANQLQNYRNYLL 135
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading
enzyme) {Plasmodium falciparum, plasmepsin II [TaxId:
5833]}
Length = 329
Score = 26.5 bits (57), Expect = 4.6
Identities = 22/191 (11%), Positives = 55/191 (28%), Gaps = 7/191 (3%)
Query: 93 TFPEDDESITHQIVDRPSIGKQYISRVFDSINAKQLAPVEKYFIGVTLPPHLSSYYVQPQ 152
+ S+ ++ + I + + + + + + +
Sbjct: 90 LVTVGNLSLPYKFI--EVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQN 147
Query: 153 WVFDSINAKQLAPVEKYFIGVTLPPHMSSYYVQPQWVFDSINAKQLAPVEKYFIGVTLPP 212
+ +++ L +K+ +T+ +Y P + +G +
Sbjct: 148 KIENALFTFYLPVHDKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQITLDAHVGNIMLE 207
Query: 213 HLSPFIDTTKTEHYVPPEAEDPENERL-----RDPKNIQTLCKYYVQPQWVFDSINAKQL 267
+ +D+ + VP + + + L TLC P + F S N K
Sbjct: 208 KANCIVDSGTSAITVPTDFLNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYT 267
Query: 268 APVEKYFIGVT 278
E Y +
Sbjct: 268 LEPEYYLQHIE 278
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus
chinensis) [TaxId: 4843]}
Length = 325
Score = 26.4 bits (57), Expect = 5.7
Identities = 19/166 (11%), Positives = 35/166 (21%), Gaps = 4/166 (2%)
Query: 114 QYISRVFDSINAKQLAPVEKYFIGVTLPPHLSSYYVQPQWVFDSINAKQLAPVEKYFIGV 173
+ S D + + T +L S + + +F K +I
Sbjct: 113 SFASGPNDGLLGLGFDTITTVRGVKTPMDNLISQGLISRPIFGVYLGKAKNGGGGEYIFG 172
Query: 174 TLPPHMSSYYVQPQWVFDSINAKQLAPVEKYFIGVTLPPHLSPFIDTTKTEHYVPPEAED 233
+ + +S + T+ +DT T +P
Sbjct: 173 GYDSTKFKGSLTTVPIDNSRGWWGITVDRATVGTSTVASSFDGILDTGTTLLILPNNIAA 232
Query: 234 PENERLRDPKNIQTL----CKYYVQPQWVFDSINAKQLAPVEKYFI 275
N C VF A +
Sbjct: 233 SVARAYGASDNGDGTYTISCDTSAFKPLVFSINGASFQVSPDSLVF 278
>d1cc1s_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit
{Desulfomicrobium baculatum [TaxId: 899]}
Length = 278
Score = 25.4 bits (55), Expect = 9.6
Identities = 5/31 (16%), Positives = 10/31 (32%)
Query: 20 DAAEFDYFPTNSEADAEKVEEFKREAEKVRK 50
D ++ PT ++ E E +
Sbjct: 34 DVISLEFHPTVMASEGEMALAHMYEIAEKFN 64
>d1yq9a1 e.19.1.1 (A:4-264) Nickel-iron hydrogenase, small subunit
{Desulfovibrio gigas [TaxId: 879]}
Length = 261
Score = 25.3 bits (55), Expect = 10.0
Identities = 10/28 (35%), Positives = 10/28 (35%)
Query: 20 DAAEFDYFPTNSEADAEKVEEFKREAEK 47
D DY T VEE EA K
Sbjct: 35 DVISMDYHETLMAGAGHAVEEALHEAIK 62
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.416
Gapped
Lambda K H
0.267 0.0418 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,293,566
Number of extensions: 62515
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 29
Length of query: 325
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 239
Effective length of database: 1,226,816
Effective search space: 293209024
Effective search space used: 293209024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)