Query psy14411
Match_columns 85
No_of_seqs 101 out of 124
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 19:11:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14411.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14411hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j9i_A GPNU1 DBD;, terminase s 79.2 3.9 0.00013 23.5 4.5 52 16-76 2-53 (68)
2 1a76_A Flap endonuclease-1 pro 64.8 4 0.00014 30.3 2.6 31 11-41 192-222 (326)
3 2izo_A FEN1, flap structure-sp 63.1 4 0.00014 30.7 2.3 28 14-41 204-231 (346)
4 1rxw_A Flap structure-specific 59.4 5.1 0.00017 29.8 2.3 28 14-41 206-233 (336)
5 1z4h_A TORI, TOR inhibition pr 58.1 7.5 0.00026 22.3 2.5 53 13-75 7-59 (66)
6 1b43_A Protein (FEN-1); nuclea 56.1 6.3 0.00021 29.4 2.3 27 15-41 208-234 (340)
7 1ul1_X Flap endonuclease-1; pr 55.6 5.9 0.0002 30.3 2.1 28 14-41 203-230 (379)
8 3q8k_A Flap endonuclease 1; he 54.3 8.2 0.00028 29.3 2.7 29 13-41 202-230 (341)
9 1whz_A Hypothetical protein; a 52.1 7 0.00024 22.8 1.7 20 17-36 51-70 (70)
10 1upk_A MO25 protein; transfera 50.4 4.7 0.00016 31.7 0.8 16 12-27 219-234 (341)
11 3ory_A Flap endonuclease 1; hy 47.8 10 0.00034 29.2 2.3 27 15-41 222-248 (363)
12 1ylx_A Hypothetical protein AP 43.3 6.4 0.00022 26.5 0.5 24 12-35 2-25 (103)
13 2ev1_A Hypothetical protein RV 30.4 29 0.001 25.5 2.4 52 11-73 73-124 (222)
14 1b0n_B Protein (SINI protein); 29.7 29 0.001 20.6 1.9 20 21-40 20-39 (57)
15 3e7l_A Transcriptional regulat 29.0 72 0.0025 17.8 3.5 29 18-46 34-62 (63)
16 1y10_A Hypothetical protein RV 27.9 33 0.0011 26.7 2.4 51 11-72 61-111 (407)
17 3eu8_A Putative glucoamylase; 26.7 17 0.00059 29.2 0.6 63 12-74 78-140 (430)
18 2oa4_A SIR5; structure, struct 26.2 39 0.0013 22.0 2.2 23 15-37 49-71 (101)
19 1exn_A 5'-exonuclease, 5'-nucl 23.9 35 0.0012 25.6 1.8 27 15-41 172-199 (290)
20 1bgx_T TAQ DNA polymerase; DNA 23.3 31 0.0011 29.3 1.6 33 15-47 161-197 (832)
21 1m45_B IQ2, IQ2 motif from MYO 22.7 21 0.00071 18.5 0.2 14 20-33 3-16 (26)
22 2enk_A HUEL, solute carrier fa 22.4 1.1E+02 0.0036 20.1 3.8 50 14-73 12-61 (101)
23 2vfx_A Mitotic spindle assembl 21.9 20 0.00069 25.4 0.1 32 13-48 8-44 (206)
24 3m03_A ORC6, origin recognitio 21.9 52 0.0018 21.3 2.1 22 17-38 64-85 (95)
25 3v2l_A AGAP005208-PA; odorant 21.4 59 0.002 19.5 2.2 29 19-49 14-42 (120)
26 2e1m_B L-glutamate oxidase; L- 21.2 20 0.00069 23.9 0.0 27 20-47 84-112 (130)
27 1und_A Advillin, P92; actin bi 20.3 67 0.0023 17.5 2.1 26 15-40 1-26 (37)
No 1
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=79.23 E-value=3.9 Score=23.53 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=38.8
Q ss_pred hccHHHHHHHhcCChhhhhhhhhhcccCCCCCchhhhhcCCCCCceeeeehhhhhHhhcCh
Q psy14411 16 YITRRGALKKLQVTLKQFRTLCILKGVYPREPIKRKRAQRGKPGVKILYYRKDINFLLHEP 76 (85)
Q Consensus 16 yitR~qAlkkLQlsl~dFRRLCILKGIyPreP~~k~k~~kg~~~~ktyY~~KDI~~L~heP 76 (85)
+||..|+.+.|+||..-++++. -.|. |..-.. .....++|...||.-.+.+.
T Consensus 2 ~lt~~e~a~~LgvS~~Tl~rw~-~~G~-P~~~~~-------g~~~~~~y~~~dv~~wl~~~ 53 (68)
T 1j9i_A 2 EVNKKQLADIFGASIRTIQNWQ-EQGM-PVLRGG-------GKGNEVLYDSAAVIKWYAER 53 (68)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHT-TTTC-CCSSCC-------CSSSCCEEEHHHHHHHHTTT
T ss_pred ccCHHHHHHHHCcCHHHHHHHH-HCCC-CeEeeC-------CCcceEEECHHHHHHHHHHC
Confidence 5899999999999999999986 4598 754331 10136899999998766543
No 2
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=64.81 E-value=4 Score=30.30 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=27.8
Q ss_pred cccchhccHHHHHHHhcCChhhhhhhhhhcc
Q psy14411 11 GEAVRYITRRGALKKLQVTLKQFRTLCILKG 41 (85)
Q Consensus 11 G~~~~yitR~qAlkkLQlsl~dFRRLCILKG 41 (85)
|.....++.+..+.+++|+.++|.-+|+|=|
T Consensus 192 ~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G 222 (326)
T 1a76_A 192 KEMPELIELNEVLEDLRISLDDLIDIAIFMG 222 (326)
T ss_dssp SSCCEEEEHHHHHHHHTCCHHHHHHHHHHHC
T ss_pred CCceEEEEHHHHHHHcCCCHHHHHHHHHHcC
Confidence 3455689999999999999999999999998
No 3
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=63.12 E-value=4 Score=30.70 Aligned_cols=28 Identities=36% Similarity=0.366 Sum_probs=26.0
Q ss_pred chhccHHHHHHHhcCChhhhhhhhhhcc
Q psy14411 14 VRYITRRGALKKLQVTLKQFRTLCILKG 41 (85)
Q Consensus 14 ~~yitR~qAlkkLQlsl~dFRRLCILKG 41 (85)
...++.+..+.+++|+.++|.-+|||-|
T Consensus 204 ~~~~~~~~v~~~~gl~~~q~id~~~L~G 231 (346)
T 2izo_A 204 PELIETEILLKKLGITREQLIDIGILIG 231 (346)
T ss_dssp CEEEEHHHHHHHHTCCHHHHHHHHHHHC
T ss_pred eEEEEHHHHHHHcCCCHHHHHHHHHHcC
Confidence 3568999999999999999999999999
No 4
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=59.45 E-value=5.1 Score=29.85 Aligned_cols=28 Identities=32% Similarity=0.409 Sum_probs=26.1
Q ss_pred chhccHHHHHHHhcCChhhhhhhhhhcc
Q psy14411 14 VRYITRRGALKKLQVTLKQFRTLCILKG 41 (85)
Q Consensus 14 ~~yitR~qAlkkLQlsl~dFRRLCILKG 41 (85)
...++.+..+.+++|+.++|.-+|+|-|
T Consensus 206 ~~~~~~~~v~~~~gl~~~q~id~~~L~G 233 (336)
T 1rxw_A 206 PEIIILESNLKRLGLTREQLIDIAILVG 233 (336)
T ss_dssp CEEEEHHHHHHHHTCCHHHHHHHHHHHC
T ss_pred eEEeEHHHHHHHcCCCHHHHHHHHhhcC
Confidence 3578999999999999999999999999
No 5
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=58.12 E-value=7.5 Score=22.35 Aligned_cols=53 Identities=6% Similarity=-0.007 Sum_probs=39.6
Q ss_pred cchhccHHHHHHHhcCChhhhhhhhhhcccCCCCCchhhhhcCCCCCceeeeehhhhhHhhcC
Q psy14411 13 AVRYITRRGALKKLQVTLKQFRTLCILKGVYPREPIKRKRAQRGKPGVKILYYRKDINFLLHE 75 (85)
Q Consensus 13 ~~~yitR~qAlkkLQlsl~dFRRLCILKGIyPreP~~k~k~~kg~~~~ktyY~~KDI~~L~he 75 (85)
...+||..++...|+||..-+.+++ -.|-+|.--+ . | ..+.|...||.--+.+
T Consensus 7 ~~~~l~~~eva~~lgvsrstiy~~~-~~g~fP~pik----l--G---~~~~w~~~ev~~Wl~~ 59 (66)
T 1z4h_A 7 PDSLVDLKFIMADTGFGKTFIYDRI-KSGDLPKAKV----I--H---GRARWLYRDHCEFKNK 59 (66)
T ss_dssp SSSEECHHHHHHHHSSCHHHHHHHH-HHHHCCCSEE----S--S---SCEEEEHHHHHHHHHH
T ss_pred cccccCHHHHHHHHCcCHHHHHHHH-HCCCCCCCEE----e--C---CCeEEeHHHHHHHHHH
Confidence 3569999999999999999999986 4788885322 1 1 2346999998755443
No 6
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=56.05 E-value=6.3 Score=29.40 Aligned_cols=27 Identities=33% Similarity=0.456 Sum_probs=25.4
Q ss_pred hhccHHHHHHHhcCChhhhhhhhhhcc
Q psy14411 15 RYITRRGALKKLQVTLKQFRTLCILKG 41 (85)
Q Consensus 15 ~yitR~qAlkkLQlsl~dFRRLCILKG 41 (85)
..++.+..+.+++|+.++|.-+|||=|
T Consensus 208 ~~~~~~~v~~~~gl~~~q~id~~~L~G 234 (340)
T 1b43_A 208 ELIILEEVLKELKLTREKLIELAILVG 234 (340)
T ss_dssp EEEEHHHHHHHHTCCHHHHHHHHHHHC
T ss_pred eEEEHHHHHHHhCCCHHHHHHHHHhcC
Confidence 468999999999999999999999988
No 7
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=55.60 E-value=5.9 Score=30.25 Aligned_cols=28 Identities=32% Similarity=0.545 Sum_probs=26.3
Q ss_pred chhccHHHHHHHhcCChhhhhhhhhhcc
Q psy14411 14 VRYITRRGALKKLQVTLKQFRTLCILKG 41 (85)
Q Consensus 14 ~~yitR~qAlkkLQlsl~dFRRLCILKG 41 (85)
...++.+..+.+++|+.++|.-+|||-|
T Consensus 203 ~~~~~~~~v~~~~gl~~~q~id~~~L~G 230 (379)
T 1ul1_X 203 IQEFHLSRILQELGLNQEQFVDLCILLG 230 (379)
T ss_dssp EEEEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred eEEEeHHHHHHHhCCCHHHHHHHHHHhC
Confidence 4579999999999999999999999999
No 8
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=54.29 E-value=8.2 Score=29.29 Aligned_cols=29 Identities=31% Similarity=0.529 Sum_probs=26.8
Q ss_pred cchhccHHHHHHHhcCChhhhhhhhhhcc
Q psy14411 13 AVRYITRRGALKKLQVTLKQFRTLCILKG 41 (85)
Q Consensus 13 ~~~yitR~qAlkkLQlsl~dFRRLCILKG 41 (85)
....++.+..+++++|+.++|.-+|+|=|
T Consensus 202 ~~~~~~~~~v~~~~gl~~~q~id~~~L~G 230 (341)
T 3q8k_A 202 PIQEFHLSRILQELGLNQEQFVDLCILLG 230 (341)
T ss_dssp EEEEEEHHHHHHHHTCCHHHHHHHHHHHC
T ss_pred ceEEEcHHHHHHHhCCCHHHHHHHHHhcC
Confidence 34678999999999999999999999999
No 9
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=52.14 E-value=7 Score=22.80 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=16.9
Q ss_pred ccHHHHHHHhcCChhhhhhh
Q psy14411 17 ITRRGALKKLQVTLKQFRTL 36 (85)
Q Consensus 17 itR~qAlkkLQlsl~dFRRL 36 (85)
-|-.++++.++|+.+||..|
T Consensus 51 g~lk~Ilkqagl~~eef~~l 70 (70)
T 1whz_A 51 GTFKRILRDAGLTEEEFHNL 70 (70)
T ss_dssp HHHHHHHHHTTCCHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHhhC
Confidence 46678999999999999764
No 10
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=50.43 E-value=4.7 Score=31.67 Aligned_cols=16 Identities=38% Similarity=0.603 Sum_probs=13.9
Q ss_pred ccchhccHHHHHHHhc
Q psy14411 12 EAVRYITRRGALKKLQ 27 (85)
Q Consensus 12 ~~~~yitR~qAlkkLQ 27 (85)
++.||+||.|++|-|+
T Consensus 219 ~S~NYVTkRQSlKLLg 234 (341)
T 1upk_A 219 HSENYVTKRQSLKLLG 234 (341)
T ss_dssp TCSSHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHH
Confidence 3579999999999886
No 11
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=47.83 E-value=10 Score=29.16 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=25.8
Q ss_pred hhccHHHHHHHhcCChhhhhhhhhhcc
Q psy14411 15 RYITRRGALKKLQVTLKQFRTLCILKG 41 (85)
Q Consensus 15 ~yitR~qAlkkLQlsl~dFRRLCILKG 41 (85)
..++.+..+++++|+.++|.-+|+|=|
T Consensus 222 ~~~~~~~v~~~~gl~~~q~id~~~L~G 248 (363)
T 3ory_A 222 ELIELDKLLVQLGITLENLIDIGILLG 248 (363)
T ss_dssp EEEEHHHHHHHHTCCHHHHHHHHHHHC
T ss_pred EEEcHHHHHHHhCcCHHHHHHHHHHhC
Confidence 578999999999999999999999999
No 12
>1ylx_A Hypothetical protein APC35702; dimer, structural genomics, PSI, protein structure initiative; 1.60A {Geobacillus stearothermophilus} SCOP: d.82.5.1
Probab=43.32 E-value=6.4 Score=26.54 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=18.8
Q ss_pred ccchhccHHHHHHHhcCChhhhhh
Q psy14411 12 EAVRYITRRGALKKLQVTLKQFRT 35 (85)
Q Consensus 12 ~~~~yitR~qAlkkLQlsl~dFRR 35 (85)
++..|++|+|+|.-||=|+.+.=-
T Consensus 2 ~~Mef~~Re~ii~el~~~~~~~l~ 25 (103)
T 1ylx_A 2 NAMEFAPRSVVIEEFIDTLEPMME 25 (103)
T ss_dssp --CCCBCHHHHHHHHHHHHHHHHH
T ss_pred chhhhccHHHHHHHHHHHHHHHHH
Confidence 568899999999999988876533
No 13
>2ev1_A Hypothetical protein RV1264/MT1302; alpha-helical, regulatory domain of adenylyl cyclase, oleic lyase; HET: OLA 1PE; 1.60A {Mycobacterium tuberculosis} PDB: 2ev2_A* 2ev3_A* 2ev4_A*
Probab=30.43 E-value=29 Score=25.49 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=38.5
Q ss_pred cccchhccHHHHHHHhcCChhhhhhhhhhcccCCCCCchhhhhcCCCCCceeeeehhhhhHhh
Q psy14411 11 GEAVRYITRRGALKKLQVTLKQFRTLCILKGVYPREPIKRKRAQRGKPGVKILYYRKDINFLL 73 (85)
Q Consensus 11 G~~~~yitR~qAlkkLQlsl~dFRRLCILKGIyPreP~~k~k~~kg~~~~ktyY~~KDI~~L~ 73 (85)
|....|+|+.++-+..+||....||+=--=|+ |..+- .+...|.--|+.-|.
T Consensus 73 Gg~~~yvT~~eVAe~aGv~~e~~rr~wRalGf-p~~~d----------~d~r~fteaDV~aLr 124 (222)
T 2ev1_A 73 GDDGTYVSAREISENYGVDLELLQRVQRAVGL-ARVDD----------PDAVVHMRADGEAAA 124 (222)
T ss_dssp TCCSCEECHHHHHHHHTCCHHHHHHHHHHHCC-CCCCC----------TTCCCEEHHHHHHHT
T ss_pred CCCcCcCCHHHHHHHHCcCHHHHHHHHHHhCC-CCCCC----------CCCccCCHHHHHHHH
Confidence 56677899999999999999999998766674 32111 134678888887664
No 14
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=29.67 E-value=29 Score=20.59 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=15.6
Q ss_pred HHHHHhcCChhhhhhhhhhc
Q psy14411 21 GALKKLQVTLKQFRTLCILK 40 (85)
Q Consensus 21 qAlkkLQlsl~dFRRLCILK 40 (85)
+..+.+++|++|+|.+=-+-
T Consensus 20 ~~Ak~lGlsleEIrefL~l~ 39 (57)
T 1b0n_B 20 VEAKEANISPEEIRKYLLLN 39 (57)
T ss_dssp HHHHHTTCCHHHHHHHHHHC
T ss_pred HHHHHcCCCHHHHHHHHHHh
Confidence 44578999999999986543
No 15
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=28.95 E-value=72 Score=17.82 Aligned_cols=29 Identities=3% Similarity=0.052 Sum_probs=21.9
Q ss_pred cHHHHHHHhcCChhhhhhhhhhcccCCCC
Q psy14411 18 TRRGALKKLQVTLKQFRTLCILKGVYPRE 46 (85)
Q Consensus 18 tR~qAlkkLQlsl~dFRRLCILKGIyPre 46 (85)
++++|-+.|+||...+.|.+===||-|++
T Consensus 34 n~~~aA~~LGisr~tL~rklkk~gi~~~~ 62 (63)
T 3e7l_A 34 DLKRTAEEIGIDLSNLYRKIKSLNIRVKS 62 (63)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTCCCCC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHhCCCCCC
Confidence 46789999999999998876544665543
No 16
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase; HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB: 1y11_A*
Probab=27.93 E-value=33 Score=26.72 Aligned_cols=51 Identities=18% Similarity=0.183 Sum_probs=39.0
Q ss_pred cccchhccHHHHHHHhcCChhhhhhhhhhcccCCCCCchhhhhcCCCCCceeeeehhhhhHh
Q psy14411 11 GEAVRYITRRGALKKLQVTLKQFRTLCILKGVYPREPIKRKRAQRGKPGVKILYYRKDINFL 72 (85)
Q Consensus 11 G~~~~yitR~qAlkkLQlsl~dFRRLCILKGIyPreP~~k~k~~kg~~~~ktyY~~KDI~~L 72 (85)
|....|+||.|+-...+++++.-||+=-.-|.= ..|- .+...|.-.|+..|
T Consensus 61 g~~~~y~t~~~~a~~~g~~~~~~~r~wralGf~-~~~~----------~d~~~ft~~Dv~al 111 (407)
T 1y10_A 61 GDDGTYVSAREISENYGVDLELLQRVQRAVGLA-RVDD----------PDAVVHMRADGEAA 111 (407)
T ss_dssp TCCSCEECHHHHHHHHTCCHHHHHHHHHHTTCC-CCCC----------TTCCCEEHHHHHHH
T ss_pred CCCcCcCCHHHHHHHhCCCHHHHHHHHHHcCCC-CCCC----------ccccccCHHHHHHH
Confidence 556679999999999999999999999888853 2111 13456788888665
No 17
>3eu8_A Putative glucoamylase; YP_210071.1, structural genomics, JOI for structural genomics, JCSG; 2.12A {Bacteroides fragilis nctc 9343}
Probab=26.71 E-value=17 Score=29.19 Aligned_cols=63 Identities=14% Similarity=0.109 Sum_probs=40.0
Q ss_pred ccchhccHHHHHHHhcCChhhhhhhhhhcccCCCCCchhhhhcCCCCCceeeeehhhhhHhhc
Q psy14411 12 EAVRYITRRGALKKLQVTLKQFRTLCILKGVYPREPIKRKRAQRGKPGVKILYYRKDINFLLH 74 (85)
Q Consensus 12 ~~~~yitR~qAlkkLQlsl~dFRRLCILKGIyPreP~~k~k~~kg~~~~ktyY~~KDI~~L~h 74 (85)
...-||||+||+.++.-+|.-+.++==.+|.||+=---.-.+-.-.+....+...=|-.+|+.
T Consensus 78 ~e~G~I~r~ea~~R~~~tL~~l~~~~r~~G~fyhwyD~~Tg~~lpf~~~d~~~StVDTa~L~~ 140 (430)
T 3eu8_A 78 IDRGYVSREEGLRRMEKIVGFLEKADRFKGAYPHWWNGETGHVQPFGQKDNGGDLVETAFLMQ 140 (430)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHSCCBTTBCCSEEETTTCCBCCBTTTBCSEEHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHhchhcCCcCccccCCCCCCcCCCCcccCcccHHHHHHHHH
Confidence 345799999999999999988888767788888633211100000011234567777776654
No 18
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=26.16 E-value=39 Score=22.01 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=20.7
Q ss_pred hhccHHHHHHHhcCChhhhhhhh
Q psy14411 15 RYITRRGALKKLQVTLKQFRTLC 37 (85)
Q Consensus 15 ~yitR~qAlkkLQlsl~dFRRLC 37 (85)
+=+|..+|.++..||..+|.+.|
T Consensus 49 g~lS~~EAa~ry~Is~~ei~~W~ 71 (101)
T 2oa4_A 49 GLITLAEAKQTYGLSDEEFNSWV 71 (101)
T ss_dssp TTCCHHHHHHTTCSSHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHH
Confidence 45889999999999999999887
No 19
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=23.93 E-value=35 Score=25.60 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=24.7
Q ss_pred hhccHHHHHHHhcCCh-hhhhhhhhhcc
Q psy14411 15 RYITRRGALKKLQVTL-KQFRTLCILKG 41 (85)
Q Consensus 15 ~yitR~qAlkkLQlsl-~dFRRLCILKG 41 (85)
..++.+....+++|+. .+|--+|+|-|
T Consensus 172 ~~~~~~~v~ek~Gv~p~~q~iD~~~L~G 199 (290)
T 1exn_A 172 REYHLRDMYEHHNVDDVEQFISLKAIMG 199 (290)
T ss_dssp EEECGGGHHHHHSSSSHHHHHHHHHHHC
T ss_pred EEEcHHHHHHHcCCCHHHHHHHHHHhcC
Confidence 4677888999999999 99999999999
No 20
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=23.32 E-value=31 Score=29.33 Aligned_cols=33 Identities=21% Similarity=0.162 Sum_probs=29.0
Q ss_pred hhccHHHHHHHhcCChhhhhhhhhhcc----cCCCCC
Q psy14411 15 RYITRRGALKKLQVTLKQFRTLCILKG----VYPREP 47 (85)
Q Consensus 15 ~yitR~qAlkkLQlsl~dFRRLCILKG----IyPreP 47 (85)
..++.+....+++|+..+|.-+|+|-| -+|-.|
T Consensus 161 ~~~~~~~v~~~~gv~p~q~id~~~L~GD~sDnipGVp 197 (832)
T 1bgx_T 161 YLITPAWLWEKYGLRPDQWADYRALTGDESDNLPGVK 197 (832)
T ss_dssp CCBCSTTHHHHTCCCGGGTTTTTTSSCCSSSCCCCCC
T ss_pred cEEcHHHHHHHHCcCHHHHHHHHHhcCCccccCCCCC
Confidence 578888999999999999999999999 566655
No 21
>1m45_B IQ2, IQ2 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae}
Probab=22.65 E-value=21 Score=18.54 Aligned_cols=14 Identities=43% Similarity=0.527 Sum_probs=11.4
Q ss_pred HHHHHHhcCChhhh
Q psy14411 20 RGALKKLQVTLKQF 33 (85)
Q Consensus 20 ~qAlkkLQlsl~dF 33 (85)
+||++-||-+.+-|
T Consensus 3 sqaikylqnnikgf 16 (26)
T 1m45_B 3 SQAIKYLQNNIKGF 16 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHhccceE
Confidence 68999999877766
No 22
>2enk_A HUEL, solute carrier family 30 member 9; cation transporter, cobalt, zinc, cadmium, protein of unknown function DUF993, embryonic LUNG protein; NMR {Homo sapiens}
Probab=22.38 E-value=1.1e+02 Score=20.13 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=35.6
Q ss_pred chhccHHHHHHHhcCChhhhhhhhhhcccCCCCCchhhhhcCCCCCceeeeehhhhhHhh
Q psy14411 14 VRYITRRGALKKLQVTLKQFRTLCILKGVYPREPIKRKRAQRGKPGVKILYYRKDINFLL 73 (85)
Q Consensus 14 ~~yitR~qAlkkLQlsl~dFRRLCILKGIyPreP~~k~k~~kg~~~~ktyY~~KDI~~L~ 73 (85)
-++||+++|...--|+..|+.. .|+.-+...- .++.+-+.|...||.--+
T Consensus 12 ~~lITkteAk~dYlLkd~dL~~-------L~~i~k~NPh---~~~~~MkLYlr~qVe~rA 61 (101)
T 2enk_A 12 NNFITGVRAINEFCLKSSDLEQ-------LRKIRRRSPH---EDTESFTVYLRSDVEAKS 61 (101)
T ss_dssp CSEEEHHHHHHHTCCCHHHHHH-------SCCBCTTCSS---CSSCCCCEEEHHHHHHHH
T ss_pred cccccHHHHHHHHCCChhhhhh-------CcccccCCCC---CCCCCceeehHHHHHHHH
Confidence 5799999999999999999986 3444333321 122567888888876544
No 23
>2vfx_A Mitotic spindle assembly checkpoint protein MAD2A; CDC2, nucleus, mitosis, anaphase, cell cycle, CE division, spindle checkpoint; HET: PE4 PE3; 1.95A {Homo sapiens} PDB: 2qyf_A 2v64_A 1s2h_A 1go4_A 3gmh_A 1klq_A 2v64_D 1duj_A
Probab=21.87 E-value=20 Score=25.41 Aligned_cols=32 Identities=28% Similarity=0.517 Sum_probs=18.6
Q ss_pred cchhccHHHHHHHhcCChhhhhhhh-----hhcccCCCCCc
Q psy14411 13 AVRYITRRGALKKLQVTLKQFRTLC-----ILKGVYPREPI 48 (85)
Q Consensus 13 ~~~yitR~qAlkkLQlsl~dFRRLC-----ILKGIyPreP~ 48 (85)
..+-||-.+...-+ .+|=..+ -++||||.|-=
T Consensus 8 ~~~~itlk~s~~iv----~efl~~ain~ILY~RgiYP~e~F 44 (206)
T 2vfx_A 8 REQGITARGSAEIV----AEFFSFGINSILYQRGIYPSETF 44 (206)
T ss_dssp CCCSBCHHHHHHHH----HHHHHHHHHHHHHHTTSSCGGGE
T ss_pred ccceeeHHHHHHHH----HHHHHHHHHHHHHhccCCChHHh
Confidence 34556666554322 3443333 37999999873
No 24
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=21.86 E-value=52 Score=21.33 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=18.7
Q ss_pred ccHHHHHHHhcCChhhhhhhhh
Q psy14411 17 ITRRGALKKLQVTLKQFRTLCI 38 (85)
Q Consensus 17 itR~qAlkkLQlsl~dFRRLCI 38 (85)
+++.+-+..-.++..+|.+||.
T Consensus 64 VdK~KL~~~s~lk~~~f~~l~~ 85 (95)
T 3m03_A 64 VDKNKMVATSGVKKAIFDRLCK 85 (95)
T ss_dssp CCHHHHHHTTCBCHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHH
Confidence 5677778888999999999994
No 25
>3v2l_A AGAP005208-PA; odorant binding olfaction, general odorant binding protein, transport, secreted, odorant-binding protein; HET: PG4; 1.80A {Anopheles gambiae} PDB: 4f7f_A* 3vb1_A
Probab=21.39 E-value=59 Score=19.53 Aligned_cols=29 Identities=17% Similarity=0.090 Sum_probs=23.1
Q ss_pred HHHHHHHhcCChhhhhhhhhhcccCCCCCch
Q psy14411 19 RRGALKKLQVTLKQFRTLCILKGVYPREPIK 49 (85)
Q Consensus 19 R~qAlkkLQlsl~dFRRLCILKGIyPreP~~ 49 (85)
|+.-+..+++|.++...+ .+|.||-++.-
T Consensus 14 ~~~C~~e~gv~~e~i~~~--~~~~~p~d~~~ 42 (120)
T 3v2l_A 14 RSVCLGKTKVAEELVNGL--RESKFADVKEL 42 (120)
T ss_dssp HHHHHHHHCCCHHHHHHT--TTTCCCCCHHH
T ss_pred HHHhhhhhCcCHHHHHHH--HcCCCCCCccc
Confidence 566778899999988885 78999977653
No 26
>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=21.21 E-value=20 Score=23.86 Aligned_cols=27 Identities=15% Similarity=-0.079 Sum_probs=3.3
Q ss_pred HHHHHHhcCChhhhhhhh--hhcccCCCCC
Q psy14411 20 RGALKKLQVTLKQFRTLC--ILKGVYPREP 47 (85)
Q Consensus 20 ~qAlkkLQlsl~dFRRLC--ILKGIyPreP 47 (85)
..|.+-..++. +=|++| -|.+|||-..
T Consensus 84 ~~A~~~~~l~~-~~r~~~~~~l~~~~p~~~ 112 (130)
T 2e1m_B 84 EDDAEAALALP-QSVRNLPTGLLGAHPSVD 112 (130)
T ss_dssp CCSCCCC-----------------------
T ss_pred HHHHHHhcCCH-HHHHHHHHHHHHhCCCCc
Confidence 34445455655 558888 4999999777
No 27
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=20.31 E-value=67 Score=17.49 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=20.2
Q ss_pred hhccHHHHHHHhcCChhhhhhhhhhc
Q psy14411 15 RYITRRGALKKLQVTLKQFRTLCILK 40 (85)
Q Consensus 15 ~yitR~qAlkkLQlsl~dFRRLCILK 40 (85)
.|+|-++=.+-+++|..+|.+|=..|
T Consensus 1 ~yLsd~dF~~vFgmsr~eF~~LP~WK 26 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQFAALPGWK 26 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHHHHSCHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHChHHH
Confidence 37788888888999999998875443
Done!