Query psy14411
Match_columns 85
No_of_seqs 101 out of 124
Neff 3.6
Searched_HMMs 13730
Date Fri Aug 16 19:11:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14411.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14411hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1a3xa3 c.49.1.1 (A:367-500) P 59.9 1.2 8.6E-05 27.8 0.6 19 29-47 60-78 (134)
2 d2g50a3 c.49.1.1 (A:396-530) P 57.4 1.4 0.0001 27.7 0.6 19 29-47 60-78 (135)
3 d1e0ta3 c.49.1.1 (A:354-470) P 54.7 1.6 0.00012 26.6 0.6 20 29-48 49-68 (117)
4 d1pkla3 c.49.1.1 (A:358-498) P 50.4 2.1 0.00015 26.9 0.6 19 29-47 67-85 (141)
5 d2vgba3 c.49.1.1 (A:440-573) P 44.7 2.3 0.00017 26.4 0.1 20 29-48 60-79 (134)
6 d1upka_ a.118.1.15 (A:) Mo25 p 44.6 3.1 0.00022 30.8 0.8 16 12-27 210-225 (330)
7 d1whza_ d.50.3.2 (A:) Hypothet 44.4 5.1 0.00037 22.7 1.7 19 18-36 52-70 (70)
8 d2oa4a1 a.4.12.3 (A:1-93) Unch 39.2 6.7 0.00049 24.2 1.7 21 16-36 50-70 (93)
9 d1ul1x1 a.60.7.1 (X:218-357) F 35.3 6 0.00044 24.2 1.0 14 28-41 1-14 (140)
10 d1hyrc1 b.1.1.2 (C:181-274) Cl 33.8 3.1 0.00022 24.0 -0.6 12 36-47 21-32 (94)
11 d1uvqb1 b.1.1.2 (B:95-191) Cla 32.5 3.3 0.00024 24.1 -0.6 13 35-47 21-33 (97)
12 d1p4wa_ a.4.6.2 (A:) Transcrip 31.6 22 0.0016 20.2 3.2 28 19-46 58-86 (87)
13 d3frua1 b.1.1.2 (A:179-269) Fc 31.6 4 0.00029 23.5 -0.3 12 36-47 21-32 (91)
14 d2j9ga1 b.84.2.1 (A:331-446) B 31.5 4.6 0.00034 25.2 -0.0 17 18-34 64-80 (116)
15 d1w96a1 b.84.2.1 (A:451-566) A 30.9 6 0.00044 24.5 0.5 17 18-34 65-81 (116)
16 d1t7va1 b.1.1.2 (A:184-277) Zi 30.2 3.8 0.00028 23.4 -0.6 12 36-47 21-32 (94)
17 d1hdma1 b.1.1.2 (A:94-196) Cla 29.8 3.9 0.00029 24.3 -0.6 12 36-47 24-35 (103)
18 d2j88h1 b.1.1.2 (H:113-180) Im 29.8 4.6 0.00034 22.6 -0.2 12 36-47 26-37 (68)
19 d1u58a1 b.1.1.2 (A:145-242) Im 29.5 4 0.00029 24.0 -0.6 13 36-48 20-32 (98)
20 d1uvqa1 b.1.1.2 (A:85-183) Cla 29.3 4.1 0.0003 23.9 -0.5 12 36-47 25-36 (99)
21 d1ulza1 b.84.2.1 (A:329-451) B 29.3 5.2 0.00038 25.2 -0.1 17 18-34 66-82 (123)
22 d1de4a1 b.1.1.2 (A:182-275) He 28.8 4.8 0.00035 23.4 -0.3 12 36-47 21-32 (94)
23 d2hzaa1 a.43.1.3 (A:1-48) Nick 25.2 13 0.00096 20.1 1.2 13 14-26 23-35 (48)
24 d1mjuh2 b.1.1.2 (H:114-230) Im 24.6 6.3 0.00046 22.8 -0.3 13 36-48 26-38 (102)
25 d2bj7a1 a.43.1.3 (A:1-50) Nick 23.9 14 0.00099 20.2 1.1 13 14-26 25-37 (50)
26 d1dn0b2 b.1.1.2 (B:121-225) Im 23.8 5.9 0.00043 23.1 -0.6 12 36-47 27-38 (105)
27 d1lk2b_ b.1.1.2 (B:) beta2-mic 23.7 5.9 0.00043 22.8 -0.6 12 36-47 24-35 (99)
28 d1hxma2 b.1.1.2 (A:121-206) T- 23.3 7.9 0.00058 22.2 -0.0 13 36-48 19-31 (86)
29 d1r8ea1 a.6.1.3 (A:3-120) Tran 22.4 53 0.0039 18.8 3.8 50 15-73 2-52 (118)
30 d1unda_ a.14.1.1 (A:) Advillin 21.2 29 0.0021 17.6 2.1 24 16-39 1-24 (36)
31 d1k5na1 b.1.1.2 (A:182-276) Cl 20.6 8.5 0.00062 22.0 -0.3 12 36-47 21-32 (95)
32 d1rxwa1 a.60.7.1 (A:220-324) F 20.4 19 0.0014 21.2 1.3 14 28-41 1-14 (105)
33 d3bjha_ a.39.2.1 (A:) Pheromon 20.1 33 0.0024 19.4 2.4 29 19-49 15-43 (117)
No 1
>d1a3xa3 c.49.1.1 (A:367-500) Pyruvate kinase, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=59.93 E-value=1.2 Score=27.77 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=15.6
Q ss_pred ChhhhhhhhhhcccCCCCC
Q psy14411 29 TLKQFRTLCILKGVYPREP 47 (85)
Q Consensus 29 sl~dFRRLCILKGIyPreP 47 (85)
+..-.|+||++.||||.--
T Consensus 60 ~~~~~r~l~l~~GV~p~~~ 78 (134)
T d1a3xa3 60 CPRAARFSHLYRGVFPFVF 78 (134)
T ss_dssp CHHHHHHGGGSTTEEEEEC
T ss_pred CHHHhhhhhhhCCeEEEEe
Confidence 4567799999999999643
No 2
>d2g50a3 c.49.1.1 (A:396-530) Pyruvate kinase, C-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=57.39 E-value=1.4 Score=27.66 Aligned_cols=19 Identities=16% Similarity=0.368 Sum_probs=15.9
Q ss_pred ChhhhhhhhhhcccCCCCC
Q psy14411 29 TLKQFRTLCILKGVYPREP 47 (85)
Q Consensus 29 sl~dFRRLCILKGIyPreP 47 (85)
+..-.|+|+++.||||.--
T Consensus 60 ~~~~~r~L~L~~GV~p~~~ 78 (135)
T d2g50a3 60 NHQTARQAHLYRGIFPVVC 78 (135)
T ss_dssp CHHHHHHGGGSTTEEEEEC
T ss_pred CHHHHhhhcccCCeeeeec
Confidence 5567899999999999853
No 3
>d1e0ta3 c.49.1.1 (A:354-470) Pyruvate kinase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=54.68 E-value=1.6 Score=26.59 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=16.2
Q ss_pred ChhhhhhhhhhcccCCCCCc
Q psy14411 29 TLKQFRTLCILKGVYPREPI 48 (85)
Q Consensus 29 sl~dFRRLCILKGIyPreP~ 48 (85)
+..--|+|++..||||..-.
T Consensus 49 ~~~~~r~l~l~~GV~p~~~~ 68 (117)
T d1e0ta3 49 NEKTAHQLVLSKGVVPQLVK 68 (117)
T ss_dssp CHHHHHHGGGSTTEEEEECS
T ss_pred CHHHHHHhcccCCeeecccC
Confidence 45667999999999997644
No 4
>d1pkla3 c.49.1.1 (A:358-498) Pyruvate kinase, C-terminal domain {Leishmania mexicana [TaxId: 5665]}
Probab=50.37 E-value=2.1 Score=26.88 Aligned_cols=19 Identities=32% Similarity=0.240 Sum_probs=15.2
Q ss_pred ChhhhhhhhhhcccCCCCC
Q psy14411 29 TLKQFRTLCILKGVYPREP 47 (85)
Q Consensus 29 sl~dFRRLCILKGIyPreP 47 (85)
+..--|+||++.||||.-.
T Consensus 67 ~~~~~r~l~l~~GV~p~~~ 85 (141)
T d1pkla3 67 RLQTCRQLNITQGVESVFF 85 (141)
T ss_dssp CHHHHHHGGGSTTEEEEEC
T ss_pred CHHHHHHhcccCCcEEEEe
Confidence 4556799999999999743
No 5
>d2vgba3 c.49.1.1 (A:440-573) Pyruvate kinase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.67 E-value=2.3 Score=26.36 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=15.2
Q ss_pred ChhhhhhhhhhcccCCCCCc
Q psy14411 29 TLKQFRTLCILKGVYPREPI 48 (85)
Q Consensus 29 sl~dFRRLCILKGIyPreP~ 48 (85)
+..--|+||++.||||..-.
T Consensus 60 ~~~~~r~l~l~~GV~p~~~~ 79 (134)
T d2vgba3 60 SAQAARQVHLCRGVFPLLYR 79 (134)
T ss_dssp CHHHHHHGGGSTTEEEEECC
T ss_pred CHHHHHHhhhcCCceeeeec
Confidence 34456999999999997543
No 6
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.57 E-value=3.1 Score=30.84 Aligned_cols=16 Identities=38% Similarity=0.603 Sum_probs=13.8
Q ss_pred ccchhccHHHHHHHhc
Q psy14411 12 EAVRYITRRGALKKLQ 27 (85)
Q Consensus 12 ~~~~yitR~qAlkkLQ 27 (85)
++.||+||.|++|-|+
T Consensus 210 ~s~NYVtrRqSlKLLg 225 (330)
T d1upka_ 210 HSENYVTKRQSLKLLG 225 (330)
T ss_dssp TCSSHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHH
Confidence 3579999999999885
No 7
>d1whza_ d.50.3.2 (A:) Hypothetical protein TTHA1913 {Thermus thermophilus [TaxId: 274]}
Probab=44.44 E-value=5.1 Score=22.72 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=16.6
Q ss_pred cHHHHHHHhcCChhhhhhh
Q psy14411 18 TRRGALKKLQVTLKQFRTL 36 (85)
Q Consensus 18 tR~qAlkkLQlsl~dFRRL 36 (85)
|-.+.++..+||.+||..|
T Consensus 52 tl~~Ilkqagl~~eef~~L 70 (70)
T d1whza_ 52 TFKRILRDAGLTEEEFHNL 70 (70)
T ss_dssp HHHHHHHHTTCCHHHHHHC
T ss_pred HHHHHHHHhCCCHHHHHhC
Confidence 5678999999999999875
No 8
>d2oa4a1 a.4.12.3 (A:1-93) Uncharacterized protein SPO1678 {Silicibacter pomeroyi [TaxId: 89184]}
Probab=39.17 E-value=6.7 Score=24.22 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=18.8
Q ss_pred hccHHHHHHHhcCChhhhhhh
Q psy14411 16 YITRRGALKKLQVTLKQFRTL 36 (85)
Q Consensus 16 yitR~qAlkkLQlsl~dFRRL 36 (85)
-+|.++|+++-+||.++|-..
T Consensus 50 l~S~~EAcrrY~LS~eEf~~W 70 (93)
T d2oa4a1 50 LITLAEAKQTYGLSDEEFNSW 70 (93)
T ss_dssp TCCHHHHHHTTCSSHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHH
Confidence 479999999999999999764
No 9
>d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.35 E-value=6 Score=24.20 Aligned_cols=14 Identities=50% Similarity=0.895 Sum_probs=12.1
Q ss_pred CChhhhhhhhhhcc
Q psy14411 28 VTLKQFRTLCILKG 41 (85)
Q Consensus 28 lsl~dFRRLCILKG 41 (85)
|+.++|..+|||=|
T Consensus 1 l~~~q~id~~~L~G 14 (140)
T d1ul1x1 1 LNQEQFVDLCILLG 14 (140)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC
Confidence 57788999999988
No 10
>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}
Probab=33.79 E-value=3.1 Score=23.95 Aligned_cols=12 Identities=33% Similarity=0.709 Sum_probs=10.8
Q ss_pred hhhhcccCCCCC
Q psy14411 36 LCILKGVYPREP 47 (85)
Q Consensus 36 LCILKGIyPreP 47 (85)
+|...|.||.+-
T Consensus 21 ~C~~~gFyP~~i 32 (94)
T d1hyrc1 21 TCRASGFYPWNI 32 (94)
T ss_dssp EEEEEEEBSSCC
T ss_pred EEEEEEEECCCc
Confidence 599999999985
No 11
>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}
Probab=32.55 E-value=3.3 Score=24.13 Aligned_cols=13 Identities=23% Similarity=0.662 Sum_probs=11.2
Q ss_pred hhhhhcccCCCCC
Q psy14411 35 TLCILKGVYPREP 47 (85)
Q Consensus 35 RLCILKGIyPreP 47 (85)
=+|...|.||.+-
T Consensus 21 L~C~~~gF~P~~i 33 (97)
T d1uvqb1 21 LVCSVTDFYPGQI 33 (97)
T ss_dssp EEEEEEEEBSSCC
T ss_pred EEEEEeeeECCCe
Confidence 3599999999876
No 12
>d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia amylovora [TaxId: 552]}
Probab=31.63 E-value=22 Score=20.18 Aligned_cols=28 Identities=18% Similarity=0.180 Sum_probs=23.4
Q ss_pred HHHHHHHhcC-ChhhhhhhhhhcccCCCC
Q psy14411 19 RRGALKKLQV-TLKQFRTLCILKGVYPRE 46 (85)
Q Consensus 19 R~qAlkkLQl-sl~dFRRLCILKGIyPre 46 (85)
+..+.+||++ |..++=..++--|+.|.|
T Consensus 58 ~~~i~~Kl~~~~~~~lv~~a~~~gl~~~~ 86 (87)
T d1p4wa_ 58 KKSAMMKLGVDNDIALLNYLSSVSMTPVD 86 (87)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHcCCCCCC
Confidence 4568889998 678888899999999876
No 13
>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=31.60 E-value=4 Score=23.53 Aligned_cols=12 Identities=33% Similarity=0.589 Sum_probs=10.7
Q ss_pred hhhhcccCCCCC
Q psy14411 36 LCILKGVYPREP 47 (85)
Q Consensus 36 LCILKGIyPreP 47 (85)
.|+..|.||.+-
T Consensus 21 ~C~~~gF~P~~i 32 (91)
T d3frua1 21 TCAAFSFYPPEL 32 (91)
T ss_dssp EEEEEEEBSSCC
T ss_pred EEEEEeEECCCC
Confidence 599999999875
No 14
>d2j9ga1 b.84.2.1 (A:331-446) Biotin carboxylase (BC), C-domain {Escherichia coli [TaxId: 562]}
Probab=31.51 E-value=4.6 Score=25.20 Aligned_cols=17 Identities=18% Similarity=0.366 Sum_probs=15.7
Q ss_pred cHHHHHHHhcCChhhhh
Q psy14411 18 TRRGALKKLQVTLKQFR 34 (85)
Q Consensus 18 tR~qAlkkLQlsl~dFR 34 (85)
||++|+++|.-.|.+|+
T Consensus 64 ~R~~Ai~~l~~aL~e~~ 80 (116)
T d2j9ga1 64 NRDVAIARMKNALQELI 80 (116)
T ss_dssp SHHHHHHHHHHHHHHCE
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 79999999999999886
No 15
>d1w96a1 b.84.2.1 (A:451-566) Acetyl-CoA carboxylase, BC-C subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=30.93 E-value=6 Score=24.48 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=15.4
Q ss_pred cHHHHHHHhcCChhhhh
Q psy14411 18 TRRGALKKLQVTLKQFR 34 (85)
Q Consensus 18 tR~qAlkkLQlsl~dFR 34 (85)
||++|+++|.-.|.+|.
T Consensus 65 ~R~~Ai~rl~~aL~e~~ 81 (116)
T d1w96a1 65 NRQASRKHMVVALKELS 81 (116)
T ss_dssp SHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhce
Confidence 79999999999998884
No 16
>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.18 E-value=3.8 Score=23.44 Aligned_cols=12 Identities=25% Similarity=0.614 Sum_probs=10.7
Q ss_pred hhhhcccCCCCC
Q psy14411 36 LCILKGVYPREP 47 (85)
Q Consensus 36 LCILKGIyPreP 47 (85)
.|...|.||.+-
T Consensus 21 ~C~~~gFyP~~i 32 (94)
T d1t7va1 21 KCLAYDFYPGKI 32 (94)
T ss_dssp EEEEEEEBSSCE
T ss_pred EEEEEeEECCCC
Confidence 599999999975
No 17
>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}
Probab=29.80 E-value=3.9 Score=24.33 Aligned_cols=12 Identities=17% Similarity=0.719 Sum_probs=10.8
Q ss_pred hhhhcccCCCCC
Q psy14411 36 LCILKGVYPREP 47 (85)
Q Consensus 36 LCILKGIyPreP 47 (85)
+|.+.|.||.+-
T Consensus 24 ~C~v~gF~P~~i 35 (103)
T d1hdma1 24 VCFVSNLFPPML 35 (103)
T ss_dssp EEEEEEEBSSCE
T ss_pred EEEEeeEECCCC
Confidence 699999999876
No 18
>d2j88h1 b.1.1.2 (H:113-180) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.76 E-value=4.6 Score=22.55 Aligned_cols=12 Identities=33% Similarity=0.866 Sum_probs=9.9
Q ss_pred hhhhcccCCCCC
Q psy14411 36 LCILKGVYPREP 47 (85)
Q Consensus 36 LCILKGIyPreP 47 (85)
.|+.+|.||.+-
T Consensus 26 ~CL~~gF~P~~i 37 (68)
T d2j88h1 26 GCLVKGYFPEPV 37 (68)
T ss_dssp -CEEEEEBSSCC
T ss_pred EEEEeceECCCc
Confidence 599999999874
No 19
>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}
Probab=29.51 E-value=4 Score=23.97 Aligned_cols=13 Identities=23% Similarity=0.598 Sum_probs=11.2
Q ss_pred hhhhcccCCCCCc
Q psy14411 36 LCILKGVYPREPI 48 (85)
Q Consensus 36 LCILKGIyPreP~ 48 (85)
.|+..|.||.+-.
T Consensus 20 ~C~~~gFyP~~I~ 32 (98)
T d1u58a1 20 RCFARDYYPADLE 32 (98)
T ss_dssp EEEEEEEBSSCEE
T ss_pred EEEEEEEcCCCCE
Confidence 5999999999863
No 20
>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}
Probab=29.33 E-value=4.1 Score=23.88 Aligned_cols=12 Identities=17% Similarity=0.861 Sum_probs=11.0
Q ss_pred hhhhcccCCCCC
Q psy14411 36 LCILKGVYPREP 47 (85)
Q Consensus 36 LCILKGIyPreP 47 (85)
+|...|.||.+-
T Consensus 25 ~C~~~gFyP~~i 36 (99)
T d1uvqa1 25 ICLVDNIFPPVV 36 (99)
T ss_dssp EEEEEEECSSCC
T ss_pred EEEEEEEECCCC
Confidence 699999999987
No 21
>d1ulza1 b.84.2.1 (A:329-451) Biotin carboxylase (BC), C-domain {Aquifex aeolicus [TaxId: 63363]}
Probab=29.26 E-value=5.2 Score=25.20 Aligned_cols=17 Identities=18% Similarity=0.464 Sum_probs=15.8
Q ss_pred cHHHHHHHhcCChhhhh
Q psy14411 18 TRRGALKKLQVTLKQFR 34 (85)
Q Consensus 18 tR~qAlkkLQlsl~dFR 34 (85)
||.+|+++|.-.|.+|.
T Consensus 66 ~R~~Ai~rl~~aL~e~~ 82 (123)
T d1ulza1 66 TWDEAVERMRAALETYE 82 (123)
T ss_dssp SHHHHHHHHHHHHHTCE
T ss_pred cHHHHHHHHHHHHHHhc
Confidence 79999999999999886
No 22
>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.79 E-value=4.8 Score=23.42 Aligned_cols=12 Identities=25% Similarity=0.504 Sum_probs=10.7
Q ss_pred hhhhcccCCCCC
Q psy14411 36 LCILKGVYPREP 47 (85)
Q Consensus 36 LCILKGIyPreP 47 (85)
.|+..|.||.+-
T Consensus 21 ~C~~~gFyP~~i 32 (94)
T d1de4a1 21 RCRALNYYPQNI 32 (94)
T ss_dssp EEEEEEEBSSCC
T ss_pred EEEEeeEECCCC
Confidence 499999999986
No 23
>d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=25.18 E-value=13 Score=20.09 Aligned_cols=13 Identities=23% Similarity=0.447 Sum_probs=10.7
Q ss_pred chhccHHHHHHHh
Q psy14411 14 VRYITRRGALKKL 26 (85)
Q Consensus 14 ~~yitR~qAlkkL 26 (85)
..|-+|++||+-|
T Consensus 23 ~gy~nRSEaIRdl 35 (48)
T d2hzaa1 23 RGYNNRSEAIRDI 35 (48)
T ss_dssp TTCCSHHHHHHHH
T ss_pred cCCCcHHHHHHHH
Confidence 4589999999865
No 24
>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}
Probab=24.62 E-value=6.3 Score=22.80 Aligned_cols=13 Identities=31% Similarity=0.784 Sum_probs=11.1
Q ss_pred hhhhcccCCCCCc
Q psy14411 36 LCILKGVYPREPI 48 (85)
Q Consensus 36 LCILKGIyPreP~ 48 (85)
.|++.|.||.+-.
T Consensus 26 ~Cl~~gf~P~~i~ 38 (102)
T d1mjuh2 26 GCLVKGYFPEPVT 38 (102)
T ss_dssp EEEEEEEBSSCCE
T ss_pred EEEEeeeeCCCeE
Confidence 5999999998764
No 25
>d2bj7a1 a.43.1.3 (A:1-50) Nickel responsive regulator NikR, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=23.90 E-value=14 Score=20.23 Aligned_cols=13 Identities=31% Similarity=0.611 Sum_probs=10.7
Q ss_pred chhccHHHHHHHh
Q psy14411 14 VRYITRRGALKKL 26 (85)
Q Consensus 14 ~~yitR~qAlkkL 26 (85)
..|-+|++||+-|
T Consensus 25 ~gy~nRSEaIRdl 37 (50)
T d2bj7a1 25 IGYENRSEAIRDL 37 (50)
T ss_dssp HTCSSHHHHHHHH
T ss_pred cCCCcHHHHHHHH
Confidence 4589999999865
No 26
>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.77 E-value=5.9 Score=23.14 Aligned_cols=12 Identities=17% Similarity=0.426 Sum_probs=10.5
Q ss_pred hhhhcccCCCCC
Q psy14411 36 LCILKGVYPREP 47 (85)
Q Consensus 36 LCILKGIyPreP 47 (85)
+|++.|.||.+-
T Consensus 27 ~Cl~~gF~P~~i 38 (105)
T d1dn0b2 27 GCLAQDFLPDSI 38 (105)
T ss_dssp EEEEEEEBSSCC
T ss_pred EEEEecccCCcE
Confidence 599999999865
No 27
>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.72 E-value=5.9 Score=22.83 Aligned_cols=12 Identities=17% Similarity=0.310 Sum_probs=10.8
Q ss_pred hhhhcccCCCCC
Q psy14411 36 LCILKGVYPREP 47 (85)
Q Consensus 36 LCILKGIyPreP 47 (85)
.|.+.|.||.+-
T Consensus 24 ~C~v~gf~P~~i 35 (99)
T d1lk2b_ 24 NCYVTQFHPPHI 35 (99)
T ss_dssp EEEEEEEBSSCC
T ss_pred EEEEEEEECCCc
Confidence 699999999876
No 28
>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}
Probab=23.29 E-value=7.9 Score=22.22 Aligned_cols=13 Identities=31% Similarity=0.851 Sum_probs=10.8
Q ss_pred hhhhcccCCCCCc
Q psy14411 36 LCILKGVYPREPI 48 (85)
Q Consensus 36 LCILKGIyPreP~ 48 (85)
.|..+|.||.+-.
T Consensus 19 ~Cl~~gF~P~~i~ 31 (86)
T d1hxma2 19 ACLVKEFYPKDIR 31 (86)
T ss_dssp EEEEESCBSSCCE
T ss_pred EEEEeeEECCCCE
Confidence 4999999998653
No 29
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=22.39 E-value=53 Score=18.81 Aligned_cols=50 Identities=16% Similarity=0.106 Sum_probs=37.5
Q ss_pred hhccHHHHHHHhcCChhhhhhhhhhcccC-CCCCchhhhhcCCCCCceeeeehhhhhHhh
Q psy14411 15 RYITRRGALKKLQVTLKQFRTLCILKGVY-PREPIKRKRAQRGKPGVKILYYRKDINFLL 73 (85)
Q Consensus 15 ~yitR~qAlkkLQlsl~dFRRLCILKGIy-PreP~~k~k~~kg~~~~ktyY~~KDI~~L~ 73 (85)
.|.|=.++-+.++||..--|-.. =.|+. |...+.. ..--||...||..|.
T Consensus 2 ~yytI~evA~~~gvs~~tlR~Ye-~~GLl~P~~~r~~--------~gyR~Y~~~~l~~l~ 52 (118)
T d1r8ea1 2 SYYSIGEVSKLANVSIKALRYYD-KIDLFKPAYVDPD--------TSYRYYTDSQLIHLD 52 (118)
T ss_dssp CEEEHHHHHHHHTCCHHHHHHHH-HTTSSCCSEECTT--------TCCEEEETGGGGHHH
T ss_pred CcccHHHHHHHHCcCHHHHHHHH-HcCCcccccccCC--------CCcccccHHHHHHHH
Confidence 47888999999999999999988 46988 5322211 135689999998874
No 30
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.20 E-value=29 Score=17.64 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=18.4
Q ss_pred hccHHHHHHHhcCChhhhhhhhhh
Q psy14411 16 YITRRGALKKLQVTLKQFRTLCIL 39 (85)
Q Consensus 16 yitR~qAlkkLQlsl~dFRRLCIL 39 (85)
|+|-++=.+-+++|..+|-+|=-.
T Consensus 1 yLsd~dF~~vFgmsr~eF~~LP~W 24 (36)
T d1unda_ 1 YLSEQDFVSVFGITRGQFAALPGW 24 (36)
T ss_dssp CCCHHHHHHHHSSCHHHHHHSCHH
T ss_pred CCCHHHHHHHHCcCHHHHHHCcHH
Confidence 567777778889999999887443
No 31
>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.62 E-value=8.5 Score=21.98 Aligned_cols=12 Identities=42% Similarity=0.742 Sum_probs=10.9
Q ss_pred hhhhcccCCCCC
Q psy14411 36 LCILKGVYPREP 47 (85)
Q Consensus 36 LCILKGIyPreP 47 (85)
.|...|.||.+-
T Consensus 21 ~C~~~gFyP~~i 32 (95)
T d1k5na1 21 RCWALGFYPAEI 32 (95)
T ss_dssp EEEEEEEBSSCC
T ss_pred EEEEEeEeCCCC
Confidence 699999999887
No 32
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=20.37 E-value=19 Score=21.21 Aligned_cols=14 Identities=36% Similarity=0.520 Sum_probs=12.2
Q ss_pred CChhhhhhhhhhcc
Q psy14411 28 VTLKQFRTLCILKG 41 (85)
Q Consensus 28 lsl~dFRRLCILKG 41 (85)
||.++|--||||=|
T Consensus 1 lt~eq~iD~~~L~G 14 (105)
T d1rxwa1 1 LTREQLIDIAILVG 14 (105)
T ss_dssp CCHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHhC
Confidence 57788999999998
No 33
>d3bjha_ a.39.2.1 (A:) Pheromone-binding protein asp1 {Common honeybee (Apis mellifera) [TaxId: 7460]}
Probab=20.05 E-value=33 Score=19.39 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=22.8
Q ss_pred HHHHHHHhcCChhhhhhhhhhcccCCCCCch
Q psy14411 19 RRGALKKLQVTLKQFRTLCILKGVYPREPIK 49 (85)
Q Consensus 19 R~qAlkkLQlsl~dFRRLCILKGIyPreP~~ 49 (85)
+++-++.+++|.+++..+ .+|.+|-++.-
T Consensus 15 ~~~C~~~~gv~~e~~~~~--~~~~~p~d~~~ 43 (117)
T d3bjha_ 15 KARCMSEHGTTQAQIDDV--DKGNLVNEPSI 43 (117)
T ss_dssp HHHHHHHHTCCHHHHHHH--HTTCCCCCHHH
T ss_pred HHHhhhhhCcCHHHHHHH--HcCCCCCChhh
Confidence 356678899999988875 78999977643
Done!