RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14411
         (85 letters)



>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 153

 Score = 23.3 bits (50), Expect = 4.6
 Identities = 6/38 (15%), Positives = 17/38 (44%), Gaps = 2/38 (5%)

Query: 2  VIRQKKYEAGEAVRYITRRGALKKLQVTLKQFRTLCIL 39
          +I + +    +A+R + +R  +   +   +    L +L
Sbjct: 39 IINETEEGPKDALRAVKKR--IVGNKNFHEVMLALTVL 74


>d2vlqa1 a.28.2.1 (A:4-84) ImmE9 protein (Im9) {Escherichia coli
          [TaxId: 562]}
          Length = 81

 Score = 22.8 bits (49), Expect = 4.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 46 EPIKRKRAQRGKPGVK 61
            +K+ RA  GK G K
Sbjct: 66 NTVKQWRAANGKSGFK 81


>d1gxha_ a.28.2.1 (A:) ImmE8 (Im8) {Escherichia coli [TaxId: 562]}
          Length = 85

 Score = 22.7 bits (49), Expect = 5.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)

Query: 46 EPIKRKRAQRGKPGVK 61
          + IK  RA  GK G K
Sbjct: 68 KEIKEWRAANGKSGFK 83


>d1ayia_ a.28.2.1 (A:) ImmE7 protein (Im7) {Escherichia coli
          [TaxId: 562]}
          Length = 86

 Score = 22.4 bits (48), Expect = 6.6
 Identities = 9/14 (64%), Positives = 9/14 (64%)

Query: 48 IKRKRAQRGKPGVK 61
          IK  RA  GKPG K
Sbjct: 72 IKEWRAANGKPGFK 85


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.143    0.412 

Gapped
Lambda     K      H
   0.267   0.0671    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 312,820
Number of extensions: 12979
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 8
Length of query: 85
Length of database: 2,407,596
Length adjustment: 50
Effective length of query: 35
Effective length of database: 1,721,096
Effective search space: 60238360
Effective search space used: 60238360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.0 bits)