BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14414
(76 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MZE|A Chain A, Human Factor Inhibiting Hif (Fih1)
pdb|1MZF|A Chain A, Human Factor Inhibiting Hif (Fih1) In Complex With
2-Oxoglutarate
Length = 351
Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%)
Query: 32 IEYPLKGHQKVAILRNIEKMVAEALQNQEEVSHLMRALVLGRYT 75
IEYPLK HQKVAI+RNIEKM+ EAL N +EV L+ ++ GRY
Sbjct: 308 IEYPLKAHQKVAIMRNIEKMLGEALGNPQEVGPLLNTMIKGRYN 351
>pdb|2Y0I|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Tankyrase-2
(Tnks2) Fragment Peptide (21-Mer)
pdb|2YC0|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
R-2-Hydroxyglutarate
pdb|2YDE|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
S-2-Hydroxyglutarate
pdb|4AI8|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Daminozide
Length = 352
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%)
Query: 32 IEYPLKGHQKVAILRNIEKMVAEALQNQEEVSHLMRALVLGRYT 75
IEYPLK HQKVAI+RNIEKM+ EAL N +EV L+ ++ GRY
Sbjct: 309 IEYPLKAHQKVAIMRNIEKMLGEALGNPQEVGPLLNTMIKGRYN 352
>pdb|2ILM|A Chain A, Factor Inhibiting Hif-1 Alpha D201a Mutant In Complex With
Fe(ii), Alpha-ketoglutarate And Hif-1 Alpha 35mer
Length = 349
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%)
Query: 32 IEYPLKGHQKVAILRNIEKMVAEALQNQEEVSHLMRALVLGRYT 75
IEYPLK HQKVAI+RNIEKM+ EAL N +EV L+ ++ GRY
Sbjct: 306 IEYPLKAHQKVAIMRNIEKMLGEALGNPQEVGPLLNTMIKGRYN 349
>pdb|3D8C|A Chain A, Factor Inhibiting Hif-1 Alpha D201g Mutant In Complex With
Zn(Ii), Alpha-Ketoglutarate And Hif-1 Alpha 19mer
Length = 349
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%)
Query: 32 IEYPLKGHQKVAILRNIEKMVAEALQNQEEVSHLMRALVLGRYT 75
IEYPLK HQKVAI+RNIEKM+ EAL N +EV L+ ++ GRY
Sbjct: 306 IEYPLKAHQKVAIMRNIEKMLGEALGNPQEVGPLLNTMIKGRYN 349
>pdb|3KCX|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Clioquinol
pdb|3KCY|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
8-Hydroxyquino
Length = 335
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%)
Query: 32 IEYPLKGHQKVAILRNIEKMVAEALQNQEEVSHLMRALVLGRYT 75
IEYPLK HQKVAI+RNIEKM+ EAL N +EV L+ ++ GRY
Sbjct: 292 IEYPLKAHQKVAIMRNIEKMLGEALGNPQEVGPLLNTMIKGRYN 335
>pdb|2XUM|A Chain A, Factor Inhibiting Hif (Fih) Q239h Mutant In Complex With
Zn(Ii), Nog And Asp-Substrate Peptide (20-Mer)
Length = 349
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%)
Query: 32 IEYPLKGHQKVAILRNIEKMVAEALQNQEEVSHLMRALVLGRYT 75
IEYPLK HQKVAI+RNIEKM+ EAL N +EV L+ ++ GRY
Sbjct: 306 IEYPLKAHQKVAIMRNIEKMLGEALGNPQEVGPLLNTMIKGRYN 349
>pdb|1H2K|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2L|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2M|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2N|A Chain A, Factor Inhibiting Hif-1 Alpha
pdb|1YCI|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
N-(Carboxycarbonyl)-D- Phenylalanine
pdb|2CGN|A Chain A, Factor Inhibiting Hif-1 Alpha With Succinate
pdb|2CGO|A Chain A, Factor Inhibiting Hif-1 Alpha With Fumarate
pdb|2W0X|A Chain A, Factor Inhibiting Hif-1 Alpha With Pyridine 2,4
Dicarboxylic Acid
pdb|2WA3|A Chain A, Factor Inhibiting Hif-1 Alpha With 2-(3-Hydroxyphenyl)-2-
Oxoacetic Acid
pdb|2WA4|A Chain A, Factor Inhibiting Hif-1 Alpha With N,3-Dihydroxybenzamide
pdb|3P3N|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Notch 1
Fragment Mouse Notch (1930-1949) Peptide
pdb|3P3P|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Notch 1
Fragment Mouse Notch (1997-2016) Peptide
pdb|3OD4|A Chain A, Crystal Structure Of Factor Inhibiting Hif-1 Alpha
Complexed With Inhibitor
pdb|4B7E|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Consensus
Ankyrin Repeat Domain-leu Peptide (20-mer)
pdb|4B7K|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Consensus
Ankyrin Repeat Domain-ser Peptide (20-mer)
Length = 349
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%)
Query: 32 IEYPLKGHQKVAILRNIEKMVAEALQNQEEVSHLMRALVLGRYT 75
IEYPLK HQKVAI+RNIEKM+ EAL N +EV L+ ++ GRY
Sbjct: 306 IEYPLKAHQKVAIMRNIEKMLGEALGNPQEVGPLLNTMIKGRYN 349
>pdb|1IZ3|A Chain A, Dimeric Structure Of Fih (Factor Inhibiting Hif)
Length = 349
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 31/44 (70%)
Query: 32 IEYPLKGHQKVAILRNIEKMVAEALQNQEEVSHLMRALVLGRYT 75
IEYPLK HQKVAI RNIEK + EAL N +EV L+ + GRY
Sbjct: 306 IEYPLKAHQKVAIXRNIEKXLGEALGNPQEVGPLLNTXIKGRYN 349
>pdb|1FX3|A Chain A, Crystal Structure Of H. Influenzae Secb
pdb|1FX3|B Chain B, Crystal Structure Of H. Influenzae Secb
pdb|1FX3|C Chain C, Crystal Structure Of H. Influenzae Secb
pdb|1FX3|D Chain D, Crystal Structure Of H. Influenzae Secb
pdb|1OZB|A Chain A, Crystal Structure Of Secb Complexed With Seca C-Terminus
pdb|1OZB|B Chain B, Crystal Structure Of Secb Complexed With Seca C-Terminus
pdb|1OZB|C Chain C, Crystal Structure Of Secb Complexed With Seca C-Terminus
pdb|1OZB|D Chain D, Crystal Structure Of Secb Complexed With Seca C-Terminus
pdb|1OZB|E Chain E, Crystal Structure Of Secb Complexed With Seca C-Terminus
pdb|1OZB|F Chain F, Crystal Structure Of Secb Complexed With Seca C-Terminus
pdb|1OZB|G Chain G, Crystal Structure Of Secb Complexed With Seca C-Terminus
pdb|1OZB|H Chain H, Crystal Structure Of Secb Complexed With Seca C-Terminus
Length = 169
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 9 FENPDLQKVSQVSWKPKTKPTGDIEYPLKGHQKVAILRNIEKMVAEALQNQEEVSHLMRA 68
FE P+L + Q WKPK E G ++ NI V L++ +V+ +
Sbjct: 30 FEAPNLPHIFQQEWKPKLGFDLSTETTQVGDDLYEVVLNIS--VETTLEDSGDVAFICEV 87
Query: 69 LVLGRYT 75
G +T
Sbjct: 88 KQAGVFT 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,277,536
Number of Sequences: 62578
Number of extensions: 69291
Number of successful extensions: 168
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 160
Number of HSP's gapped (non-prelim): 9
length of query: 76
length of database: 14,973,337
effective HSP length: 45
effective length of query: 31
effective length of database: 12,157,327
effective search space: 376877137
effective search space used: 376877137
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)