Query psy14414
Match_columns 76
No_of_seqs 14 out of 16
Neff 2.0
Searched_HMMs 29240
Date Fri Aug 16 19:14:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14414.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14414hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d8c_A Hypoxia-inducible facto 99.7 6.5E-17 2.2E-21 118.7 6.3 58 18-75 291-349 (349)
2 3abf_A 4-oxalocrotonate tautom 63.0 6.4 0.00022 20.8 2.6 27 35-61 11-37 (64)
3 3rbs_A Myomesin-1; immunoglobu 61.2 2.7 9.2E-05 26.6 0.9 33 1-34 2-37 (207)
4 3m20_A 4-oxalocrotonate tautom 56.7 7.9 0.00027 21.1 2.3 28 34-61 8-35 (62)
5 3m21_A Probable tautomerase HP 55.5 10 0.00035 20.8 2.6 27 35-61 13-39 (67)
6 3ej9_B Beta-subunit of trans-3 55.0 8.7 0.0003 24.2 2.5 26 36-61 11-36 (70)
7 2x4k_A 4-oxalocrotonate tautom 54.9 10 0.00036 19.5 2.5 27 35-61 13-39 (63)
8 3vej_A Ubiquitin-like protein 49.8 19 0.00066 20.6 3.2 26 47-72 10-36 (41)
9 3mb2_B 4-oxalocrotonate tautom 49.8 12 0.00039 23.8 2.4 28 33-60 10-37 (72)
10 3n4h_A Putative tautomerase; C 49.4 12 0.00041 23.5 2.5 26 36-61 12-37 (148)
11 1otf_A 4-oxalocrotonate tautom 47.3 17 0.00058 18.9 2.6 27 35-61 10-36 (62)
12 1qu9_A YJGF protein; structura 46.9 10 0.00035 23.5 1.9 23 39-61 48-70 (128)
13 1qah_A Perchloric acid soluble 46.8 10 0.00035 24.0 1.9 24 38-61 51-74 (136)
14 3k12_A Uncharacterized protein 46.4 11 0.00036 23.6 1.9 24 38-61 36-59 (122)
15 2ig8_A Hypothetical protein PA 46.4 11 0.00036 24.0 1.9 41 21-61 28-77 (144)
16 1qd9_A Purine regulatory prote 46.3 11 0.00037 23.4 1.9 41 21-61 24-69 (124)
17 3ry0_A Putative tautomerase; o 46.2 16 0.00056 19.7 2.5 26 36-61 11-36 (65)
18 1x25_A Hypothetical UPF0076 pr 46.1 11 0.00037 23.5 1.9 24 38-61 50-73 (128)
19 1gyx_A YDCE, B1461, hypothetic 44.4 18 0.0006 20.4 2.5 26 36-61 12-37 (76)
20 2opa_A Probable tautomerase YW 44.2 20 0.00069 18.6 2.6 27 35-61 10-36 (61)
21 2cvl_A TTHA0137, protein trans 44.1 12 0.00042 23.1 1.9 24 38-61 46-69 (124)
22 2cwj_A Putative endonuclease; 43.9 12 0.00042 23.0 1.9 25 38-62 42-66 (123)
23 3l7q_A Putative translation in 43.7 16 0.00055 22.6 2.4 24 38-61 47-70 (125)
24 2dyy_A UPF0076 protein PH0854; 43.4 13 0.00043 23.1 1.9 23 39-61 49-71 (126)
25 3ph0_A ASCE; type III secretio 43.3 7.6 0.00026 24.2 0.8 24 44-69 1-24 (67)
26 3gtz_A Putative translation in 42.8 13 0.00045 23.3 1.9 39 21-61 22-61 (124)
27 1jd1_A Hypothetical 13.9 kDa p 42.4 13 0.00046 23.1 1.9 24 38-61 50-73 (129)
28 3b5n_A Synaptobrevin homolog 1 41.9 16 0.00054 20.8 2.0 12 42-53 16-27 (61)
29 3mb2_A 4-oxalocrotonate tautom 40.5 23 0.0008 19.6 2.6 27 35-61 11-37 (72)
30 1n7s_A Vesicle-associated memb 40.5 17 0.00059 20.6 2.0 18 42-59 18-37 (63)
31 1gl2_A Endobrevin; membrane pr 40.2 17 0.00059 20.9 2.0 12 42-53 23-34 (65)
32 3lme_A Possible translation in 39.6 12 0.00041 23.8 1.4 24 39-62 50-73 (138)
33 3k0t_A Endoribonuclease L-PSP, 39.5 15 0.00052 23.7 1.9 24 38-61 65-88 (143)
34 2b33_A Protein synthesis inhib 39.3 16 0.00053 23.6 1.9 24 38-61 60-83 (140)
35 3r0p_A L-PSP putative endoribo 38.3 17 0.00058 22.5 1.9 23 39-61 51-73 (127)
36 2aal_A Malonate semialdehyde d 37.9 23 0.0008 21.6 2.5 27 35-61 75-101 (131)
37 2ewc_A Conserved hypothetical 37.7 14 0.00046 23.3 1.4 24 38-61 39-62 (126)
38 1xrg_A Putative translation in 37.4 17 0.00059 24.0 1.9 24 39-62 80-103 (156)
39 3fie_C Fragment of vesicle-ass 37.3 5.1 0.00018 21.7 -0.6 10 44-53 25-34 (38)
40 2cfu_A SDSA1; SDS-hydrolase, l 37.2 27 0.00094 27.3 3.3 48 22-71 421-477 (658)
41 1pf5_A Hypothetical protein YJ 36.5 15 0.0005 22.9 1.4 23 39-61 51-73 (131)
42 3v4d_A Aminoacrylate peracid r 35.5 20 0.00068 22.5 1.9 24 38-61 55-78 (134)
43 3kjj_A NMB1025 protein; YJGF p 35.4 20 0.00067 22.8 1.9 39 21-61 28-67 (128)
44 3m1x_A Putative endoribonuclea 35.0 20 0.00068 23.3 1.9 24 38-61 71-94 (148)
45 2d3d_A VTS1 protein; RNA bindi 34.9 8.3 0.00028 24.6 0.0 16 61-76 20-35 (88)
46 2lnz_A Ubiquitin-like protein 34.5 41 0.0014 20.9 3.2 27 46-72 32-59 (64)
47 3i3f_A Hypothetical protein; s 34.3 21 0.00072 22.6 1.9 41 21-61 37-81 (141)
48 4dh4_A MIF; trimer, isomerase; 33.5 32 0.0011 20.5 2.6 28 34-61 9-36 (114)
49 3hd7_A Vesicle-associated memb 32.7 48 0.0017 20.2 3.3 18 42-59 19-38 (91)
50 2k7r_A Primosomal protein DNAI 32.3 60 0.0021 19.8 3.7 24 43-67 16-39 (106)
51 3mf7_A CIS-3-chloroacrylic aci 32.1 38 0.0013 22.2 2.9 30 32-61 69-98 (149)
52 1urq_A M-tomosyn isoform; tran 32.0 25 0.00087 20.7 1.9 11 43-53 19-29 (63)
53 1l4a_A Synaptobrevin; snare, s 31.0 29 0.00098 20.7 2.0 11 43-53 30-40 (80)
54 2es6_A VTS1P; SAM domain, prot 31.0 7.9 0.00027 25.4 -0.6 16 61-76 33-48 (101)
55 3ej9_A Alpha-subunit of trans- 30.4 37 0.0013 19.3 2.4 27 35-61 11-37 (76)
56 3quw_A Protein MMF1; chorismat 30.2 26 0.0009 23.1 1.9 24 38-61 74-97 (153)
57 2nps_A VAMP-4, vesicle-associa 30.1 31 0.0011 20.2 2.0 13 41-53 21-33 (74)
58 3vcz_A Endoribonuclease L-PSP; 29.6 21 0.00073 23.3 1.4 24 38-61 71-94 (153)
59 3i7t_A RV2704, putative unchar 29.6 27 0.00094 22.9 1.9 39 21-61 27-65 (149)
60 3o0g_D Cyclin-dependent kinase 27.8 15 0.0005 26.1 0.3 16 21-39 89-104 (149)
61 3mlc_A FG41 malonate semialdeh 27.4 25 0.00085 22.3 1.4 26 35-61 75-100 (136)
62 1nvp_D Transcription initiatio 27.1 30 0.001 22.6 1.7 24 35-58 26-49 (108)
63 1sfc_A VAMP 2, protein (synapt 26.9 36 0.0012 21.1 2.0 11 43-53 45-55 (96)
64 2wkb_A Macrophage migration in 26.7 37 0.0013 20.6 2.0 28 34-61 9-36 (125)
65 1mww_A Hypothetical protein HI 25.9 51 0.0018 19.8 2.6 27 35-61 69-95 (128)
66 1b4u_A LIGA, LIGB, protocatech 25.8 26 0.00087 24.0 1.3 20 33-52 63-83 (139)
67 3ip0_A 2-amino-4-hydroxy-6-hyd 25.4 36 0.0012 22.9 1.9 38 17-54 33-82 (158)
68 3d01_A Uncharacterized protein 24.9 39 0.0013 22.2 2.0 24 38-61 74-98 (165)
69 2xes_A Protein PAT1 homolog 1; 24.8 46 0.0016 23.9 2.5 21 36-56 3-23 (248)
70 3eus_A DNA-binding protein; st 24.8 70 0.0024 17.7 2.8 23 52-74 62-84 (86)
71 3lyb_A Putative endoribonuclea 24.2 31 0.001 22.9 1.4 23 39-61 71-93 (165)
72 3qfs_A CPR, P450R, NADPH--cyto 24.0 87 0.003 23.8 4.0 32 44-75 416-453 (458)
73 2zqk_M Putative translocated i 23.6 16 0.00056 23.4 -0.1 39 7-54 19-57 (77)
74 2xcz_A Possible ATLS1-like lig 23.4 76 0.0026 18.6 2.9 28 34-61 65-93 (115)
75 2uwj_E Type III export protein 22.4 30 0.001 21.7 1.0 23 44-68 4-26 (70)
76 3qe2_A CPR, P450R, NADPH--cyto 22.3 96 0.0033 24.1 4.0 33 43-75 575-613 (618)
77 2otm_A Hypothetical protein; s 21.8 72 0.0025 20.7 2.8 23 39-61 67-89 (154)
78 2d00_A V-type ATP synthase sub 21.6 62 0.0021 20.2 2.4 28 26-53 70-104 (109)
79 1nh2_D Transcription initiatio 21.6 43 0.0015 22.4 1.7 24 35-58 30-53 (121)
80 2kog_A Vesicle-associated memb 21.1 49 0.0017 21.3 1.9 12 42-53 47-58 (119)
81 1hfo_A Migration inhibitory fa 20.6 75 0.0026 18.5 2.5 28 34-61 64-92 (113)
82 3b5n_C Protein transport prote 20.2 95 0.0033 18.5 2.9 26 44-69 41-66 (70)
No 1
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...
Probab=99.67 E-value=6.5e-17 Score=118.65 Aligned_cols=58 Identities=55% Similarity=0.817 Sum_probs=55.8
Q ss_pred ceeeeeecCCCCC-ceeccCCcchhhHHHHhHHHHHHHHhcChhHHHHHHHHHHhcccC
Q psy14414 18 SQVSWKPKTKPTG-DIEYPLKGHQKVAILRNIEKMVAEALQNQEEVSHLMRALVLGRYT 75 (76)
Q Consensus 18 ~sVnfwyk~~P~p-~I~yPL~~~QKVaImRNIEKML~eAL~D~~EVg~Llr~lVlGRYt 75 (76)
-|||||++..|.+ .+.||++++|+++|||||||||.++||||++|+++|++||+||||
T Consensus 291 isvn~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (349)
T 3d8c_A 291 ITVNFWYKGAPTPKRIEYPLKAHQKVAIMRNIEKMLGEALGNPQEVGPLLNTMIKGRYN 349 (349)
T ss_dssp EEEEEEEECCCCCSSCCSSCCHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHTTTTC
T ss_pred EEEEEEcCCCCCccccccchHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHhhccCC
Confidence 4899999999987 789999999999999999999999999999999999999999997
No 2
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=63.01 E-value=6.4 Score=20.81 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=24.0
Q ss_pred cCCcchhhHHHHhHHHHHHHHhcChhH
Q psy14414 35 PLKGHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 35 PL~~~QKVaImRNIEKML~eAL~D~~E 61 (76)
+++..||-++.+-|=+.|.++||-|.+
T Consensus 11 g~s~eqk~~l~~~lt~~l~~~lg~~~~ 37 (64)
T 3abf_A 11 GRPPEKKRELVRRLTEMASRLLGEPYE 37 (64)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTTCCGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 567889999999999999999998765
No 3
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=61.23 E-value=2.7 Score=26.63 Aligned_cols=33 Identities=18% Similarity=0.351 Sum_probs=21.6
Q ss_pred CCCCCCCCCCCccccccceeeeeecC---CCCCceec
Q psy14414 1 MSPNFKSDFENPDLQKVSQVSWKPKT---KPTGDIEY 34 (76)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~sVnfwyk~---~P~p~I~y 34 (76)
.+|.|++.+ |.....-++|.||... .|.|.|+.
T Consensus 2 ~~p~~~~~~-~~~v~eg~~v~l~c~~~~~~P~p~i~W 37 (207)
T 3rbs_A 2 IDPFTKSEL-AVEILEKGQVRFWMQAEKLSGNAKVNY 37 (207)
T ss_dssp ----CCEEE-EEEECGGGCEEEEEECSCCCSCCEEEE
T ss_pred CCCeeecCC-ceEEEeCCeEEEEEEEecCCCCCEEEE
Confidence 479999988 5667777889999875 36666654
No 4
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=56.66 E-value=7.9 Score=21.12 Aligned_cols=28 Identities=14% Similarity=0.125 Sum_probs=24.4
Q ss_pred ccCCcchhhHHHHhHHHHHHHHhcChhH
Q psy14414 34 YPLKGHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 34 yPL~~~QKVaImRNIEKML~eAL~D~~E 61 (76)
-+++..||-++.+-|=..+.++||-|.+
T Consensus 8 ~grt~eqK~~L~~~it~~~~~~lg~~~~ 35 (62)
T 3m20_A 8 PKLDVGKKREFVERLTSVAAEIYGMDRS 35 (62)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 4678899999999999999999987643
No 5
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=55.45 E-value=10 Score=20.81 Aligned_cols=27 Identities=11% Similarity=0.305 Sum_probs=24.1
Q ss_pred cCCcchhhHHHHhHHHHHHHHhcChhH
Q psy14414 35 PLKGHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 35 PL~~~QKVaImRNIEKML~eAL~D~~E 61 (76)
.++..||-++.+-|=..+.++||-|.+
T Consensus 13 grs~eqK~~l~~~lt~~l~~~lg~p~~ 39 (67)
T 3m21_A 13 GPTNEQKQQLIEGVSDLMVKVLNKNKA 39 (67)
T ss_dssp BSCHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCcCcc
Confidence 478899999999999999999998754
No 6
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B
Probab=54.97 E-value=8.7 Score=24.18 Aligned_cols=26 Identities=12% Similarity=0.313 Sum_probs=23.2
Q ss_pred CCcchhhHHHHhHHHHHHHHhcChhH
Q psy14414 36 LKGHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 36 L~~~QKVaImRNIEKML~eAL~D~~E 61 (76)
++.-||-+++|+|=+...++||-|-|
T Consensus 11 RT~EQK~~lI~~VT~a~~eslgap~e 36 (70)
T 3ej9_B 11 LSVARKQQLIRDVIDVTNKSIGSDPK 36 (70)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCChH
Confidence 46679999999999999999998765
No 7
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=54.92 E-value=10 Score=19.46 Aligned_cols=27 Identities=7% Similarity=0.112 Sum_probs=23.8
Q ss_pred cCCcchhhHHHHhHHHHHHHHhcChhH
Q psy14414 35 PLKGHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 35 PL~~~QKVaImRNIEKML~eAL~D~~E 61 (76)
.++..||-++.+-|=+.|.++||=|.+
T Consensus 13 g~s~e~k~~l~~~l~~~l~~~lg~p~~ 39 (63)
T 2x4k_A 13 GRSDEQLKNLVSEVTDAVEKTTGANRQ 39 (63)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 457789999999999999999998865
No 8
>3vej_A Ubiquitin-like protein MDY2; alpha helical, dimerization, homodimerization, protein bindi; 1.23A {Saccharomyces cerevisiae}
Probab=49.84 E-value=19 Score=20.56 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=21.4
Q ss_pred hHHHHHHHHhcChhHHH-HHHHHHHhc
Q psy14414 47 NIEKMVAEALQNQEEVS-HLMRALVLG 72 (76)
Q Consensus 47 NIEKML~eAL~D~~EVg-~Llr~lVlG 72 (76)
-||..|...+.|+.++. ..|.-|-.|
T Consensus 10 ~Ie~lL~~~~~d~~~a~~~~L~RLqkG 36 (41)
T 3vej_A 10 DIEALLKNNFENDQAAVRQVMERLQKG 36 (41)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhc
Confidence 48999999999999997 777666554
No 9
>3mb2_B 4-oxalocrotonate tautomerase family enzyme - beta; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=49.82 E-value=12 Score=23.78 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=25.1
Q ss_pred eccCCcchhhHHHHhHHHHHHHHhcChh
Q psy14414 33 EYPLKGHQKVAILRNIEKMVAEALQNQE 60 (76)
Q Consensus 33 ~yPL~~~QKVaImRNIEKML~eAL~D~~ 60 (76)
.-|++.-||-++.+-|.+...+.||-|-
T Consensus 10 ~~pRT~EQKralaeE~T~if~evLGcpP 37 (72)
T 3mb2_B 10 DRPPDRTRKQAFAAEASAIFQRVIGTPP 37 (72)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHCCCT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3589999999999999999999999763
No 10
>3n4h_A Putative tautomerase; CG10062, CIS-3-chloroacrylic acid dehalogenase, tautomerase superfamily, beta-alpha-beta motif, hydrolase; HET: PR7; 2.02A {Corynebacterium glutamicum} PDB: 3n4d_A* 3n4g_A
Probab=49.38 E-value=12 Score=23.46 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=23.6
Q ss_pred CCcchhhHHHHhHHHHHHHHhcChhH
Q psy14414 36 LKGHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 36 L~~~QKVaImRNIEKML~eAL~D~~E 61 (76)
++..||-+|.+-|-+.+.++||-|.+
T Consensus 12 ~s~e~k~~L~~~it~al~~~lg~p~~ 37 (148)
T 3n4h_A 12 ISREAKQRIAEAITDAHHELAHAPKY 37 (148)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTCCGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHCcCcc
Confidence 57889999999999999999998864
No 11
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=47.35 E-value=17 Score=18.88 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.5
Q ss_pred cCCcchhhHHHHhHHHHHHHHhcChhH
Q psy14414 35 PLKGHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 35 PL~~~QKVaImRNIEKML~eAL~D~~E 61 (76)
..+..||-++.+-|=..|.++||=|.+
T Consensus 10 grs~e~k~~l~~~i~~~l~~~lg~p~~ 36 (62)
T 1otf_A 10 GRTDEQKETLIRQVSEAMANSLDAPLE 36 (62)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTCCGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 357889999999999999999997754
No 12
>1qu9_A YJGF protein; structural genomics; HET: CSP; 1.20A {Escherichia coli} SCOP: d.79.1.1 PDB: 1j7h_A 2uyk_A 2uyj_A 2uyn_A* 2uyp_A
Probab=46.87 E-value=10 Score=23.52 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=19.6
Q ss_pred chhhHHHHhHHHHHHHHhcChhH
Q psy14414 39 HQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 39 ~QKVaImRNIEKML~eAL~D~~E 61 (76)
.|=..+++||+..|.+|-++.+.
T Consensus 48 ~Q~~~~l~ni~~~L~~ag~~~~~ 70 (128)
T 1qu9_A 48 AQARQSLDNVKAIVEAAGLKVGD 70 (128)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHHHcCCCHHH
Confidence 57788999999999999877654
No 13
>1qah_A Perchloric acid soluble protein; alpha-beta structure; 1.80A {Rattus norvegicus} SCOP: d.79.1.1 PDB: 1oni_A 1nq3_A
Probab=46.80 E-value=10 Score=24.00 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=20.2
Q ss_pred cchhhHHHHhHHHHHHHHhcChhH
Q psy14414 38 GHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 38 ~~QKVaImRNIEKML~eAL~D~~E 61 (76)
..|=..+++||+..|.+|-+|.+.
T Consensus 51 ~~Q~~~~l~ni~~~L~~aG~~l~~ 74 (136)
T 1qah_A 51 AEEAKQALKNLGEILKAAGCDFTN 74 (136)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHH
Confidence 467888999999999999877654
No 14
>3k12_A Uncharacterized protein A6V7T0; structural genomics, unknown function, PSI-2, protein struct initiative; 1.49A {Pseudomonas aeruginosa}
Probab=46.43 E-value=11 Score=23.59 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=19.9
Q ss_pred cchhhHHHHhHHHHHHHHhcChhH
Q psy14414 38 GHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 38 ~~QKVaImRNIEKML~eAL~D~~E 61 (76)
..|=..+++||++.|.+|-++.+.
T Consensus 36 ~~Q~~~~l~ni~~~L~~aG~~~~~ 59 (122)
T 3k12_A 36 QDQTRQILENIDRLLQSVGSDRGQ 59 (122)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHH
Confidence 368888999999999999777654
No 15
>2ig8_A Hypothetical protein PA3499; structural genomics, PSI-2, Pro structure initiative; 1.90A {Pseudomonas aeruginosa}
Probab=46.35 E-value=11 Score=24.02 Aligned_cols=41 Identities=10% Similarity=-0.031 Sum_probs=27.6
Q ss_pred eeeecCCCCC-c----eeccC----CcchhhHHHHhHHHHHHHHhcChhH
Q psy14414 21 SWKPKTKPTG-D----IEYPL----KGHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 21 nfwyk~~P~p-~----I~yPL----~~~QKVaImRNIEKML~eAL~D~~E 61 (76)
++-|-+|..+ + +-.+= -..|=..+++||+..|.+|-++.+.
T Consensus 28 ~~l~vSGq~~~~~~g~~~~~~~~~d~~~Q~~~~l~ni~~~L~~aG~~l~~ 77 (144)
T 2ig8_A 28 EELVMSGMTAHPATRQAAERGAALDAHAQALVVLGKVKALLEAAGGHVGN 77 (144)
T ss_dssp TEEEECCBCCTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CEEEEeeeCCcCCCCcEecCCCCcCHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 5667777665 1 11111 2358888999999999999877654
No 16
>1qd9_A Purine regulatory protein YABJ; perchloric acid soluble protein, purine regulation, YJGF/YER057C family, gene regulation; 1.70A {Bacillus subtilis} SCOP: d.79.1.1
Probab=46.32 E-value=11 Score=23.41 Aligned_cols=41 Identities=12% Similarity=0.040 Sum_probs=26.8
Q ss_pred eeeecCCCCC-----ceeccCCcchhhHHHHhHHHHHHHHhcChhH
Q psy14414 21 SWKPKTKPTG-----DIEYPLKGHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 21 nfwyk~~P~p-----~I~yPL~~~QKVaImRNIEKML~eAL~D~~E 61 (76)
++-|-+|..+ .+--.=-..|=..+++||+..|.+|-++.+.
T Consensus 24 ~~v~vSGq~~~~~~g~~~~~d~~~Q~~~~l~ni~~~L~~ag~~~~~ 69 (124)
T 1qd9_A 24 NMFYSSGQIPLTPSGEMVNGDIKEQTHQVFSNLKAVLEEAGASFET 69 (124)
T ss_dssp TEEEECCBCSBCTTSCBCCSCHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CEEEEeeeCCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 5666666654 1100011357788999999999999777654
No 17
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=46.21 E-value=16 Score=19.73 Aligned_cols=26 Identities=15% Similarity=0.112 Sum_probs=23.2
Q ss_pred CCcchhhHHHHhHHHHHHHHhcChhH
Q psy14414 36 LKGHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 36 L~~~QKVaImRNIEKML~eAL~D~~E 61 (76)
++..||-++.+-|=+.+.++||-|.+
T Consensus 11 rs~eqk~~L~~~it~~~~~~lg~p~~ 36 (65)
T 3ry0_A 11 RSPQEVAALGEALTAAAHETLGTPVE 36 (65)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 67899999999999999999987754
No 18
>1x25_A Hypothetical UPF0076 protein ST0811; YJGF-like protein, archaea, structural genomics, UNK function; 2.00A {Sulfolobus tokodaii} SCOP: d.79.1.1
Probab=46.06 E-value=11 Score=23.51 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=20.1
Q ss_pred cchhhHHHHhHHHHHHHHhcChhH
Q psy14414 38 GHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 38 ~~QKVaImRNIEKML~eAL~D~~E 61 (76)
..|=..+++||+..|.+|-++.+.
T Consensus 50 ~~Q~~~~l~ni~~~L~~ag~~l~~ 73 (128)
T 1x25_A 50 KVQTRQVLDNIKEIVKAAGFSLSD 73 (128)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHH
Confidence 368888999999999999877654
No 19
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=44.42 E-value=18 Score=20.42 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=22.4
Q ss_pred CCcchhhHHHHhHHHHHHHHhcChhH
Q psy14414 36 LKGHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 36 L~~~QKVaImRNIEKML~eAL~D~~E 61 (76)
|+..||-++.+-|=..|.++||=|.+
T Consensus 12 ls~eqk~~L~~~l~~~l~~~lgip~~ 37 (76)
T 1gyx_A 12 LDEQQKAALAADITDVIIRHLNSKDS 37 (76)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCGG
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCCc
Confidence 47889999999999999999996543
No 20
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=44.25 E-value=20 Score=18.60 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=23.3
Q ss_pred cCCcchhhHHHHhHHHHHHHHhcChhH
Q psy14414 35 PLKGHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 35 PL~~~QKVaImRNIEKML~eAL~D~~E 61 (76)
..+..||-++.+-|=+.|.++||=|.+
T Consensus 10 grs~eqk~~l~~~i~~~l~~~lg~~~~ 36 (61)
T 2opa_A 10 GRTDEQKRNLVEKVTEAVKETTGASEE 36 (61)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 457889999999999999999997654
No 21
>2cvl_A TTHA0137, protein translation initiation inhibitor; structural genomics, NPPSFA; 1.65A {Thermus thermophilus} SCOP: d.79.1.1 PDB: 2csl_A 2cw4_A
Probab=44.14 E-value=12 Score=23.07 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=19.8
Q ss_pred cchhhHHHHhHHHHHHHHhcChhH
Q psy14414 38 GHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 38 ~~QKVaImRNIEKML~eAL~D~~E 61 (76)
..|=..+++||+..|.+|-++.+.
T Consensus 46 ~~Q~~~~l~ni~~~L~~ag~~~~~ 69 (124)
T 2cvl_A 46 RVQTERVMENLKAVLEAAGSGLSR 69 (124)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHH
Confidence 457788999999999999777654
No 22
>2cwj_A Putative endonuclease; hydrolase, endoribonucrease, structural GE NPPSFA, national project on protein structural and function analyses; 3.60A {Aeropyrum pernix} SCOP: d.79.1.1
Probab=43.88 E-value=12 Score=23.03 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=20.5
Q ss_pred cchhhHHHHhHHHHHHHHhcChhHH
Q psy14414 38 GHQKVAILRNIEKMVAEALQNQEEV 62 (76)
Q Consensus 38 ~~QKVaImRNIEKML~eAL~D~~EV 62 (76)
..|=-.+++||+..|.+|-++.+.|
T Consensus 42 ~~Q~~~~l~ni~~~L~~ag~~l~~v 66 (123)
T 2cwj_A 42 KESAKRALDNLKAIVEGAGYSMDDI 66 (123)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCGGGC
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHe
Confidence 4688889999999999998776653
No 23
>3l7q_A Putative translation initiation inhibitor, ALDR R like protein; translation initiation inhibitor regulator-like; 2.50A {Streptococcus mutans} SCOP: d.79.1.0
Probab=43.72 E-value=16 Score=22.62 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=20.2
Q ss_pred cchhhHHHHhHHHHHHHHhcChhH
Q psy14414 38 GHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 38 ~~QKVaImRNIEKML~eAL~D~~E 61 (76)
..|=..+++||+..|.+|-++.+.
T Consensus 47 ~~Q~~~~l~ni~~~L~~ag~~~~~ 70 (125)
T 3l7q_A 47 EEQTQQVLKNISAILTEAGTDFDH 70 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGG
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHH
Confidence 468889999999999999777654
No 24
>2dyy_A UPF0076 protein PH0854; putative translation initiation inhibitor, trimer, structural genomics, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=43.44 E-value=13 Score=23.06 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=19.8
Q ss_pred chhhHHHHhHHHHHHHHhcChhH
Q psy14414 39 HQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 39 ~QKVaImRNIEKML~eAL~D~~E 61 (76)
.|=..+++||+..|.+|-++.+.
T Consensus 49 ~Q~~~~l~ni~~~L~~ag~~~~~ 71 (126)
T 2dyy_A 49 DQTRQVLENIKAILEAAGYSLND 71 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHHHcCCCHHH
Confidence 58888999999999999877654
No 25
>3ph0_A ASCE; type III secretion system, chapero; 2.40A {Aeromonas hydrophila} PDB: 2q1k_A
Probab=43.34 E-value=7.6 Score=24.24 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=18.6
Q ss_pred HHHhHHHHHHHHhcChhHHHHHHHHH
Q psy14414 44 ILRNIEKMVAEALQNQEEVSHLMRAL 69 (76)
Q Consensus 44 ImRNIEKML~eAL~D~~EVg~Llr~l 69 (76)
+|-|+|+.|..+ ||.+|-.+-.-+
T Consensus 1 mMT~LE~~L~~~--~~~~~~~i~~~L 24 (67)
T 3ph0_A 1 MMTNLETRLSGA--DPVFARELHAQL 24 (67)
T ss_dssp CCCHHHHHHTTT--CHHHHHHHHHHH
T ss_pred CcchHHHHHhcC--CHHHHHHHHHHH
Confidence 478999999988 888887765544
No 26
>3gtz_A Putative translation initiation inhibitor; structural genomics, unknown function, PSI-2, protein struct initiative; 2.50A {Salmonella typhimurium}
Probab=42.75 E-value=13 Score=23.31 Aligned_cols=39 Identities=10% Similarity=-0.083 Sum_probs=26.5
Q ss_pred eeeecCCCCCceeccC-CcchhhHHHHhHHHHHHHHhcChhH
Q psy14414 21 SWKPKTKPTGDIEYPL-KGHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 21 nfwyk~~P~p~I~yPL-~~~QKVaImRNIEKML~eAL~D~~E 61 (76)
++-|-+|..| +. |- -..|=..+++||+..|.+|-++.+.
T Consensus 22 ~~lfvSGq~~-~d-~~d~~~Q~~~~l~nl~~~L~~aG~~~~~ 61 (124)
T 3gtz_A 22 NTLWYTGVPE-NL-DADAFEQTANTLAQIDAVLEKQGSSKSR 61 (124)
T ss_dssp TEEEEEECCS-CT-TSCHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CEEEEeccCC-CC-CCCHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 4556666555 11 21 1368889999999999999777654
No 27
>1jd1_A Hypothetical 13.9 kDa protein in FCY2-PET117 intergenic region; translation inhibitor, structural genomics, PSI; 1.70A {Saccharomyces cerevisiae} SCOP: d.79.1.1
Probab=42.39 E-value=13 Score=23.11 Aligned_cols=24 Identities=8% Similarity=0.296 Sum_probs=20.0
Q ss_pred cchhhHHHHhHHHHHHHHhcChhH
Q psy14414 38 GHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 38 ~~QKVaImRNIEKML~eAL~D~~E 61 (76)
..|=..+++||+..|.+|-+|.+.
T Consensus 50 ~~Q~~~~l~ni~~~L~~aG~~~~~ 73 (129)
T 1jd1_A 50 ADKAEQVIQNIKNVLEASNSSLDR 73 (129)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHH
Confidence 468888999999999999777654
No 28
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=41.93 E-value=16 Score=20.77 Aligned_cols=12 Identities=25% Similarity=0.266 Sum_probs=9.5
Q ss_pred hHHHHhHHHHHH
Q psy14414 42 VAILRNIEKMVA 53 (76)
Q Consensus 42 VaImRNIEKML~ 53 (76)
.-++.||||+|.
T Consensus 16 ~iM~~NI~~vl~ 27 (61)
T 3b5n_A 16 GIMRDNINKVAE 27 (61)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 356789999985
No 29
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=40.52 E-value=23 Score=19.62 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=23.9
Q ss_pred cCCcchhhHHHHhHHHHHHHHhcChhH
Q psy14414 35 PLKGHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 35 PL~~~QKVaImRNIEKML~eAL~D~~E 61 (76)
.++..||-++.+-|=..+.++||-|.+
T Consensus 11 grs~eqK~~L~~~it~~l~~~lg~p~~ 37 (72)
T 3mb2_A 11 GRSTEQKAELARALSAAAAAAFDVPLA 37 (72)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTCCGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 368899999999999999999998754
No 30
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=40.50 E-value=17 Score=20.61 Aligned_cols=18 Identities=17% Similarity=0.290 Sum_probs=12.1
Q ss_pred hHHHHhHHHHHH--HHhcCh
Q psy14414 42 VAILRNIEKMVA--EALQNQ 59 (76)
Q Consensus 42 VaImRNIEKML~--eAL~D~ 59 (76)
.-+++|||++|. |-|.+-
T Consensus 18 ~iM~~NI~~vl~RGekLd~L 37 (63)
T 1n7s_A 18 DIMRVNVDKVLERDQKLSEL 37 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHH
Confidence 457789999995 444433
No 31
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=40.21 E-value=17 Score=20.91 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=9.4
Q ss_pred hHHHHhHHHHHH
Q psy14414 42 VAILRNIEKMVA 53 (76)
Q Consensus 42 VaImRNIEKML~ 53 (76)
.-++.||||+|.
T Consensus 23 ~iM~~NI~~vL~ 34 (65)
T 1gl2_A 23 NIMTQNVERILA 34 (65)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 346789999995
No 32
>3lme_A Possible translation initiation inhibitor; structural genomics, RPA2473, PSI-2, protein structure initiative; 2.74A {Rhodopseudomonas palustris} SCOP: d.79.1.0
Probab=39.56 E-value=12 Score=23.80 Aligned_cols=24 Identities=8% Similarity=0.076 Sum_probs=19.8
Q ss_pred chhhHHHHhHHHHHHHHhcChhHH
Q psy14414 39 HQKVAILRNIEKMVAEALQNQEEV 62 (76)
Q Consensus 39 ~QKVaImRNIEKML~eAL~D~~EV 62 (76)
.|=..+++||+..|.+|-+|.+.|
T Consensus 50 ~Q~~~~l~ni~~~L~~aG~~l~~V 73 (138)
T 3lme_A 50 ARIRRMFDNMLAAAEAAGATKADA 73 (138)
T ss_dssp HHHHHHHHHHHHHHHTTTCCGGGE
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHe
Confidence 688889999999999997766543
No 33
>3k0t_A Endoribonuclease L-PSP, putative; glucose binding, ER stressor, sugar binding protein; HET: BGC; 2.10A {Pseudomonas syringae PV}
Probab=39.51 E-value=15 Score=23.73 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=20.1
Q ss_pred cchhhHHHHhHHHHHHHHhcChhH
Q psy14414 38 GHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 38 ~~QKVaImRNIEKML~eAL~D~~E 61 (76)
..|=..+++||+..|.+|-+|.+.
T Consensus 65 ~~Qt~~~l~ni~aiL~~aG~~l~~ 88 (143)
T 3k0t_A 65 EAQITQVFENLKSVAQAAGGSFKD 88 (143)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHHHHhCCChHH
Confidence 367788999999999999887654
No 34
>2b33_A Protein synthesis inhibitor, putative; putative endoribonuclease, STRU genomics, joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: d.79.1.1
Probab=39.29 E-value=16 Score=23.61 Aligned_cols=24 Identities=8% Similarity=0.205 Sum_probs=19.8
Q ss_pred cchhhHHHHhHHHHHHHHhcChhH
Q psy14414 38 GHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 38 ~~QKVaImRNIEKML~eAL~D~~E 61 (76)
..|=-.+++||+..|.+|-++.+.
T Consensus 60 ~~Qt~~~l~ni~~~L~~aG~~l~~ 83 (140)
T 2b33_A 60 EEKTERVLENLKAILEAGGFSLKD 83 (140)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHH
Confidence 357788999999999999877654
No 35
>3r0p_A L-PSP putative endoribonuclease; hydrolase; 1.90A {Uncultured organism} SCOP: d.79.1.0
Probab=38.27 E-value=17 Score=22.49 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=19.2
Q ss_pred chhhHHHHhHHHHHHHHhcChhH
Q psy14414 39 HQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 39 ~QKVaImRNIEKML~eAL~D~~E 61 (76)
.|=..+++||+..|.+|-+|.+.
T Consensus 51 ~Q~~~~l~ni~~~L~~ag~~l~~ 73 (127)
T 3r0p_A 51 VQAHQVFKNLRAVCEAAGGGLRD 73 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTSCGGG
T ss_pred HHHHHHHHHHHHHHHHhCCCHHH
Confidence 68888999999999999776543
No 36
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=37.87 E-value=23 Score=21.58 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=24.2
Q ss_pred cCCcchhhHHHHhHHHHHHHHhcChhH
Q psy14414 35 PLKGHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 35 PL~~~QKVaImRNIEKML~eAL~D~~E 61 (76)
.++..||-++.+-|=+.|.+.||.+.+
T Consensus 75 grt~eqK~~l~~~l~~~l~~~lg~~~~ 101 (131)
T 2aal_A 75 PRSEEQKVCFYKLLTGALERDCGISPD 101 (131)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 468899999999999999999998765
No 37
>2ewc_A Conserved hypothetical protein; YJGF proteins family, COG025 putative translation initiation inhibitor; 2.15A {Streptococcus pyogenes} SCOP: d.79.1.1
Probab=37.71 E-value=14 Score=23.30 Aligned_cols=24 Identities=13% Similarity=0.057 Sum_probs=19.7
Q ss_pred cchhhHHHHhHHHHHHHHhcChhH
Q psy14414 38 GHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 38 ~~QKVaImRNIEKML~eAL~D~~E 61 (76)
..|=..+++||+..|.+|-++.+.
T Consensus 39 ~~Q~~~~l~ni~~~L~~aG~~l~~ 62 (126)
T 2ewc_A 39 ESQINGAFDEMERRLALVGLTLDA 62 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCGGG
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHH
Confidence 468888999999999998776554
No 38
>1xrg_A Putative translation initiation inhibitor, YJGF family; conserved hypothetical protein, protein structure initiative, PSI; 2.20A {Clostridium thermocellum} SCOP: d.79.1.1
Probab=37.36 E-value=17 Score=23.96 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=19.8
Q ss_pred chhhHHHHhHHHHHHHHhcChhHH
Q psy14414 39 HQKVAILRNIEKMVAEALQNQEEV 62 (76)
Q Consensus 39 ~QKVaImRNIEKML~eAL~D~~EV 62 (76)
.|=..+++||+..|.+|-++.+.|
T Consensus 80 ~Qt~~~l~ni~~iL~~aG~~l~~V 103 (156)
T 1xrg_A 80 EQAKQVLENLKNVLEAAGSSLNKV 103 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHE
Confidence 577889999999999997776543
No 39
>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}
Probab=37.27 E-value=5.1 Score=21.69 Aligned_cols=10 Identities=20% Similarity=0.484 Sum_probs=7.6
Q ss_pred HHHhHHHHHH
Q psy14414 44 ILRNIEKMVA 53 (76)
Q Consensus 44 ImRNIEKML~ 53 (76)
+.+||||+|.
T Consensus 25 M~~NIdkvLe 34 (38)
T 3fie_C 25 MRVNVDKVLE 34 (38)
T ss_dssp CTTTHHHHSC
T ss_pred HHHhHHHHHH
Confidence 4579999873
No 40
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=37.22 E-value=27 Score=27.33 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=38.4
Q ss_pred eeecCCCCCceeccCCcchh----hHHHHhHHHHHHHHh-----cChhHHHHHHHHHHh
Q psy14414 22 WKPKTKPTGDIEYPLKGHQK----VAILRNIEKMVAEAL-----QNQEEVSHLMRALVL 71 (76)
Q Consensus 22 fwyk~~P~p~I~yPL~~~QK----VaImRNIEKML~eAL-----~D~~EVg~Llr~lVl 71 (76)
=||-|.|+. + +||.+.+. |+.|--.+++|..|- ||...++.|+..+|.
T Consensus 421 Gw~dgnp~~-l-~~l~p~~~a~~~v~~~gg~~~~~~~a~~~~~~g~~~wa~~l~~~~~~ 477 (658)
T 2cfu_A 421 GYYDGNPAT-L-DPLSPEDSAGRYVEYMGGAERLLEQARASYARGEYRWVVEVVNRLVF 477 (658)
T ss_dssp CSCCSCGGG-T-SCCCHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcccCCccc-c-cCCChHHHHHHHHHHhcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 489999984 5 79999877 788888888876653 688899999988774
No 41
>1pf5_A Hypothetical protein YJGH; structural genomics, beta barrel, PSI, protein structure INI midwest center for structural genomics, MCSG; 2.50A {Escherichia coli} SCOP: d.79.1.1
Probab=36.54 E-value=15 Score=22.92 Aligned_cols=23 Identities=17% Similarity=0.133 Sum_probs=18.8
Q ss_pred chhhHHHHhHHHHHHHHhcChhH
Q psy14414 39 HQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 39 ~QKVaImRNIEKML~eAL~D~~E 61 (76)
.|=..+++||+..|.+|-++.+.
T Consensus 51 ~Q~~~~l~ni~~~L~~aG~~~~~ 73 (131)
T 1pf5_A 51 QQVRLAFDNLHATLAAAGCTFDD 73 (131)
T ss_dssp HHHHHHHHHHHHHHHTTTCCGGG
T ss_pred HHHHHHHHHHHHHHHHcCCCHHH
Confidence 57788999999999998766543
No 42
>3v4d_A Aminoacrylate peracid reductase RUTC; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 1.95A {Escherichia coli O6}
Probab=35.51 E-value=20 Score=22.52 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=19.7
Q ss_pred cchhhHHHHhHHHHHHHHhcChhH
Q psy14414 38 GHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 38 ~~QKVaImRNIEKML~eAL~D~~E 61 (76)
..|=..+++||+..|.+|-++.+.
T Consensus 55 ~~Q~~~~l~nl~~~L~~aG~~l~~ 78 (134)
T 3v4d_A 55 KAQTRHVLETIRKVIETAGGTMAD 78 (134)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHH
Confidence 368888999999999998776554
No 43
>3kjj_A NMB1025 protein; YJGF protein family, OPPF, structural genomics, oxford protein production facility, UN function; 1.90A {Neisseria meningitidis serogroup B} PDB: 3kjk_A
Probab=35.44 E-value=20 Score=22.79 Aligned_cols=39 Identities=13% Similarity=0.078 Sum_probs=27.4
Q ss_pred eeeecCCCCCceeccC-CcchhhHHHHhHHHHHHHHhcChhH
Q psy14414 21 SWKPKTKPTGDIEYPL-KGHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 21 nfwyk~~P~p~I~yPL-~~~QKVaImRNIEKML~eAL~D~~E 61 (76)
++-|-+|..| +. |- -..|=..+++||+..|.+|-++.+.
T Consensus 28 ~~lfvSGq~~-~d-~~d~~~Q~~~~l~nl~~~L~~aG~~l~~ 67 (128)
T 3kjj_A 28 GLIFLSGMVP-EN-GETAAEQTADVLAQIDRWLAECGSDKAH 67 (128)
T ss_dssp TEEEECCBCC-SS-CSSHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CEEEEeecCC-CC-CCCHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 5667777665 11 21 1367788999999999999776654
No 44
>3m1x_A Putative endoribonuclease L-PSP; structural genomics, seattle structural genomics center for infectious disease, ssgcid, unknown function; HET: FLC; 1.20A {Entamoeba histolytica} PDB: 3m4s_A 3mqw_A*
Probab=35.00 E-value=20 Score=23.31 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=20.4
Q ss_pred cchhhHHHHhHHHHHHHHhcChhH
Q psy14414 38 GHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 38 ~~QKVaImRNIEKML~eAL~D~~E 61 (76)
..|=..+++||+..|.+|-++.+.
T Consensus 71 ~~Q~~~~l~nl~aiL~~aG~~l~~ 94 (148)
T 3m1x_A 71 EEQSKQVMTNLKYVLEEAGSSMDK 94 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHH
Confidence 468889999999999999877654
No 45
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A
Probab=34.89 E-value=8.3 Score=24.55 Aligned_cols=16 Identities=19% Similarity=0.590 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhcccCC
Q psy14414 61 EVSHLMRALVLGRYTE 76 (76)
Q Consensus 61 EVg~Llr~lVlGRYte 76 (76)
.|...|++|.|+||++
T Consensus 20 ~V~~WL~sLrLhKY~~ 35 (88)
T 2d3d_A 20 NIPMWLKSLRLHKYSD 35 (88)
T ss_dssp CHHHHHHHTTCGGGHH
T ss_pred cHHHHHHHcccchhHH
Confidence 4889999999999973
No 46
>2lnz_A Ubiquitin-like protein MDY2; dimerization, homodimerization, protein binding; NMR {Saccharomyces cerevisiae}
Probab=34.50 E-value=41 Score=20.89 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=20.2
Q ss_pred HhHHHHHHHHhcChhHHH-HHHHHHHhc
Q psy14414 46 RNIEKMVAEALQNQEEVS-HLMRALVLG 72 (76)
Q Consensus 46 RNIEKML~eAL~D~~EVg-~Llr~lVlG 72 (76)
.-||+.|...|.|..++. -.|.-|-.|
T Consensus 32 d~Ie~lL~n~l~n~~~A~~~~LqRLQKG 59 (64)
T 2lnz_A 32 DDIEALLKNNFENDQAAVRQVMERLQKG 59 (64)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHhh
Confidence 458999999998888887 555554443
No 47
>3i3f_A Hypothetical protein; structural genomics, niaid, decode, infectious seattle structural genomics center for infectious disease, unknown function; 1.35A {Giardia lamblia}
Probab=34.26 E-value=21 Score=22.65 Aligned_cols=41 Identities=15% Similarity=-0.065 Sum_probs=26.5
Q ss_pred eeeecCCCCCce-e--cc-CCcchhhHHHHhHHHHHHHHhcChhH
Q psy14414 21 SWKPKTKPTGDI-E--YP-LKGHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 21 nfwyk~~P~p~I-~--yP-L~~~QKVaImRNIEKML~eAL~D~~E 61 (76)
++-|-+|..+.. . .+ =-..|=..+++||+..|.+|-++.+.
T Consensus 37 ~~vfvSGq~~~d~~g~~~~~~~~Q~~~~l~nl~~~L~~aG~~~~~ 81 (141)
T 3i3f_A 37 GMVYLGGSVGIDKSGTLHKGLEEQTRQTFDNIRKCLEYANSGLDY 81 (141)
T ss_dssp TEEEECCBCSBCTTSCBCSHHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CEEEEeeeCCcCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 566666665411 0 00 02367888999999999998776654
No 48
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=33.53 E-value=32 Score=20.50 Aligned_cols=28 Identities=32% Similarity=0.338 Sum_probs=24.6
Q ss_pred ccCCcchhhHHHHhHHHHHHHHhcChhH
Q psy14414 34 YPLKGHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 34 yPL~~~QKVaImRNIEKML~eAL~D~~E 61 (76)
-|+.+.|+-++...+-+.++++||-|++
T Consensus 9 v~~~~~~~~~l~~~ls~~~a~~lgKPe~ 36 (114)
T 4dh4_A 9 VAATPAQQDALLKDAEKAVADALGKPLS 36 (114)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHTCCGG
T ss_pred CCCchhhHHHHHHHHHHHHHHHHCCChH
Confidence 3566789999999999999999999886
No 49
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=32.71 E-value=48 Score=20.18 Aligned_cols=18 Identities=17% Similarity=0.290 Sum_probs=11.9
Q ss_pred hHHHHhHHHHHH--HHhcCh
Q psy14414 42 VAILRNIEKMVA--EALQNQ 59 (76)
Q Consensus 42 VaImRNIEKML~--eAL~D~ 59 (76)
.-++.||||+|. |-|.+-
T Consensus 19 ~iM~~NI~kvL~RgekL~~L 38 (91)
T 3hd7_A 19 DIMRVNVDKVLERDQKLSEL 38 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHH
Confidence 356789999993 444433
No 50
>2k7r_A Primosomal protein DNAI; DNAI N-terminal domain, helicase-loading protein, ATP- binding, DNA replication, nucleotide-binding, primosome; NMR {Bacillus subtilis}
Probab=32.32 E-value=60 Score=19.82 Aligned_cols=24 Identities=17% Similarity=0.502 Sum_probs=19.3
Q ss_pred HHHHhHHHHHHHHhcChhHHHHHHH
Q psy14414 43 AILRNIEKMVAEALQNQEEVSHLMR 67 (76)
Q Consensus 43 aImRNIEKML~eAL~D~~EVg~Llr 67 (76)
..-...|+|..+.|.||. |-.+|.
T Consensus 16 ~~~~~~~~~~~~vl~dP~-V~~Fl~ 39 (106)
T 2k7r_A 16 DFQKRLEQMKEKVMKDQD-VQAFLK 39 (106)
T ss_dssp HHHHHHHHHHHHHTTCHH-HHHHHH
T ss_pred cHHHHHHHHHHHHHcCHH-HHHHHH
Confidence 345677999999999997 777775
No 51
>3mf7_A CIS-3-chloroacrylic acid dehalogenase; beta-alpha-beta motif, tautomerase, CIS-3-CHLO acid dehalogenase, isomerase, hydrolase; HET: PR4; 1.65A {Coryneform bacterium} PDB: 3mf8_A 2flt_A 2flz_A
Probab=32.09 E-value=38 Score=22.18 Aligned_cols=30 Identities=13% Similarity=-0.008 Sum_probs=26.6
Q ss_pred eeccCCcchhhHHHHhHHHHHHHHhcChhH
Q psy14414 32 IEYPLKGHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 32 I~yPL~~~QKVaImRNIEKML~eAL~D~~E 61 (76)
+.-+.+..||-++.+-|...|.++||.+.+
T Consensus 69 ~~~GRt~eqK~~L~~~I~~~l~~~~g~~~e 98 (149)
T 3mf7_A 69 HREGRSADLKGQLAQRIVDDVSVAAEIDRK 98 (149)
T ss_dssp EESCCCHHHHHHHHHHHHHHHHHHTTCCGG
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHcCCChh
Confidence 355899999999999999999999998764
No 52
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=31.96 E-value=25 Score=20.66 Aligned_cols=11 Identities=9% Similarity=0.012 Sum_probs=9.0
Q ss_pred HHHHhHHHHHH
Q psy14414 43 AILRNIEKMVA 53 (76)
Q Consensus 43 aImRNIEKML~ 53 (76)
.+++||||+|.
T Consensus 19 iM~~ni~kvlE 29 (63)
T 1urq_A 19 ELARARLALDE 29 (63)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56789999984
No 53
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=31.05 E-value=29 Score=20.69 Aligned_cols=11 Identities=18% Similarity=0.416 Sum_probs=9.0
Q ss_pred HHHHhHHHHHH
Q psy14414 43 AILRNIEKMVA 53 (76)
Q Consensus 43 aImRNIEKML~ 53 (76)
-+.+|||++|.
T Consensus 30 iM~~NI~~vLe 40 (80)
T 1l4a_A 30 IMRVNVDKVLE 40 (80)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 46789999985
No 54
>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A
Probab=31.01 E-value=7.9 Score=25.45 Aligned_cols=16 Identities=19% Similarity=0.590 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcccCC
Q psy14414 61 EVSHLMRALVLGRYTE 76 (76)
Q Consensus 61 EVg~Llr~lVlGRYte 76 (76)
.|...|++|.|+||++
T Consensus 33 dV~~WLksLrLhKY~~ 48 (101)
T 2es6_A 33 NIPMWLKSLRLHKYSD 48 (101)
T ss_dssp CHHHHHHTTTCCCTHH
T ss_pred CHHHHHHHccCcchHH
Confidence 5889999999999974
No 55
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=30.40 E-value=37 Score=19.30 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=23.3
Q ss_pred cCCcchhhHHHHhHHHHHHHHhcChhH
Q psy14414 35 PLKGHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 35 PL~~~QKVaImRNIEKML~eAL~D~~E 61 (76)
.++..||-++.+-|=..+.++||=|.+
T Consensus 11 Grs~eqK~~L~~~it~~l~~~lg~p~~ 37 (76)
T 3ej9_A 11 GRTDEQKRALSAGLLRVISEATGEPRE 37 (76)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCcCcc
Confidence 468899999999999999999996543
No 56
>3quw_A Protein MMF1; chorismate mutase fold, intact mitochondria maintenance, mitochondrial protein, protein binding; 1.75A {Saccharomyces cerevisiae}
Probab=30.22 E-value=26 Score=23.10 Aligned_cols=24 Identities=13% Similarity=0.374 Sum_probs=20.3
Q ss_pred cchhhHHHHhHHHHHHHHhcChhH
Q psy14414 38 GHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 38 ~~QKVaImRNIEKML~eAL~D~~E 61 (76)
..|=-.+++||+..|.+|-+|.+.
T Consensus 74 ~~Qt~~~l~Ni~a~L~~aG~~l~d 97 (153)
T 3quw_A 74 SEKAEQVFQNVKNILAESNSSLDN 97 (153)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHH
Confidence 468889999999999999877654
No 57
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=30.12 E-value=31 Score=20.21 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=10.0
Q ss_pred hhHHHHhHHHHHH
Q psy14414 41 KVAILRNIEKMVA 53 (76)
Q Consensus 41 KVaImRNIEKML~ 53 (76)
|.-++.|||++|.
T Consensus 21 ~~iM~~NI~~vL~ 33 (74)
T 2nps_A 21 IDVMQENITKVIE 33 (74)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3456789999995
No 58
>3vcz_A Endoribonuclease L-PSP; virulence, pathogenesis, infectious diseases, center for STR genomics of infectious diseases, csgid, translation; HET: GOL; 1.80A {Vibrio vulnificus}
Probab=29.65 E-value=21 Score=23.33 Aligned_cols=24 Identities=17% Similarity=0.147 Sum_probs=19.8
Q ss_pred cchhhHHHHhHHHHHHHHhcChhH
Q psy14414 38 GHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 38 ~~QKVaImRNIEKML~eAL~D~~E 61 (76)
..|=..+++||+..|.+|-++.+.
T Consensus 71 ~~Qt~~~l~nl~a~L~~aG~~l~~ 94 (153)
T 3vcz_A 71 AAQARQSLDNVKAVVEASGLTVGD 94 (153)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCGGG
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHH
Confidence 367789999999999999776554
No 59
>3i7t_A RV2704, putative uncharacterized protein; siras, YJGF/YER057C/UK114, homotrimer, quick SOAK NAI deriva unknown function; 1.93A {Mycobacterium tuberculosis}
Probab=29.56 E-value=27 Score=22.91 Aligned_cols=39 Identities=21% Similarity=0.091 Sum_probs=25.8
Q ss_pred eeeecCCCCCceeccCCcchhhHHHHhHHHHHHHHhcChhH
Q psy14414 21 SWKPKTKPTGDIEYPLKGHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 21 nfwyk~~P~p~I~yPL~~~QKVaImRNIEKML~eAL~D~~E 61 (76)
++-|-+|..+ +. .=-..|=..+++||+..|.+|-++.+.
T Consensus 27 ~~lfvSGq~~-~~-~d~~~Qt~~~l~ni~aiL~~aG~~l~d 65 (149)
T 3i7t_A 27 PLVVVAGTTG-SG-DDIAAQTRDALRRIEIALGQAGATLAD 65 (149)
T ss_dssp TEEEEEEEEC-CS-SSHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CEEEEeccCC-CC-CCHHHHHHHHHHHHHHHHHHccCCHhH
Confidence 4555555554 11 112468889999999999998776543
No 60
>3o0g_D Cyclin-dependent kinase 5 activator 1; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: a.74.1.1 PDB: 1h4l_D
Probab=27.82 E-value=15 Score=26.09 Aligned_cols=16 Identities=38% Similarity=0.613 Sum_probs=11.6
Q ss_pred eeeecCCCCCceeccCCcc
Q psy14414 21 SWKPKTKPTGDIEYPLKGH 39 (76)
Q Consensus 21 nfwyk~~P~p~I~yPL~~~ 39 (76)
+|=|+|. +|.||||+-
T Consensus 89 sYSYmGN---EISYPLKPF 104 (149)
T 3o0g_D 89 SYSYMGN---EISYPLKPF 104 (149)
T ss_dssp HHHHHCS---SSCCCSGGG
T ss_pred HHHHhcc---cccccCcch
Confidence 4556654 799999984
No 61
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=27.41 E-value=25 Score=22.32 Aligned_cols=26 Identities=8% Similarity=0.029 Sum_probs=23.4
Q ss_pred cCCcchhhHHHHhHHHHHHHHhcChhH
Q psy14414 35 PLKGHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 35 PL~~~QKVaImRNIEKML~eAL~D~~E 61 (76)
+.+..||-++++-|-+.| +.||-+.+
T Consensus 75 gRt~EqK~~L~~~it~~l-~~lg~~~~ 100 (136)
T 3mlc_A 75 GRTIETKQRVFAAITESL-APIGVAGS 100 (136)
T ss_dssp TCCHHHHHHHHHHHHHHH-TTTTCCGG
T ss_pred CCCHHHHHHHHHHHHHHH-HHcCCCcc
Confidence 789999999999999999 99987654
No 62
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=27.13 E-value=30 Score=22.58 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=21.8
Q ss_pred cCCcchhhHHHHhHHHHHHHHhcC
Q psy14414 35 PLKGHQKVAILRNIEKMVAEALQN 58 (76)
Q Consensus 35 PL~~~QKVaImRNIEKML~eAL~D 58 (76)
.++++|.+.|+.|..|-+.+||.+
T Consensus 26 ~Isp~la~kVL~~FDksi~~aL~~ 49 (108)
T 1nvp_D 26 QITPQLALQVLLQFDKAINAALAQ 49 (108)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999975
No 63
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=26.94 E-value=36 Score=21.13 Aligned_cols=11 Identities=18% Similarity=0.416 Sum_probs=8.9
Q ss_pred HHHHhHHHHHH
Q psy14414 43 AILRNIEKMVA 53 (76)
Q Consensus 43 aImRNIEKML~ 53 (76)
-+++||||+|.
T Consensus 45 IM~~NI~kvLe 55 (96)
T 1sfc_A 45 IMRVNVDKVLE 55 (96)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 46789999985
No 64
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=26.68 E-value=37 Score=20.63 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=24.5
Q ss_pred ccCCcchhhHHHHhHHHHHHHHhcChhH
Q psy14414 34 YPLKGHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 34 yPL~~~QKVaImRNIEKML~eAL~D~~E 61 (76)
-+++..|+-++..-+-+.|+++||-|.+
T Consensus 9 ~~~s~~~~~~l~~~l~~ala~~lgkPe~ 36 (125)
T 2wkb_A 9 ISIPDDKAQNTLSEIEDAISNILGKPVA 36 (125)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHCSCCT
T ss_pred CCCchhhHHHHHHHHHHHHHHHhCCCHH
Confidence 3567788999999999999999998876
No 65
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=25.90 E-value=51 Score=19.84 Aligned_cols=27 Identities=7% Similarity=-0.029 Sum_probs=23.9
Q ss_pred cCCcchhhHHHHhHHHHHHHHhcChhH
Q psy14414 35 PLKGHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 35 PL~~~QKVaImRNIEKML~eAL~D~~E 61 (76)
.++..||-++.+-|=+.|.+.||-|.+
T Consensus 69 grt~eqK~~l~~~l~~~l~~~lg~~~~ 95 (128)
T 1mww_A 69 GRMEGTKKRLIKMLFSELEYKLGIRAH 95 (128)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCcChh
Confidence 588999999999999999999987654
No 66
>1b4u_A LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: a.88.1.1 PDB: 1bou_A
Probab=25.85 E-value=26 Score=24.04 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=16.3
Q ss_pred eccCCcchhhHHH-HhHHHHH
Q psy14414 33 EYPLKGHQKVAIL-RNIEKMV 52 (76)
Q Consensus 33 ~yPL~~~QKVaIm-RNIEKML 52 (76)
+|+|+..||-||+ |.+.+|+
T Consensus 63 ~~gLTeEEr~AV~~rD~~~L~ 83 (139)
T 1b4u_A 63 EWNLTPAAKAAVLARDYNAMI 83 (139)
T ss_dssp TTTCCHHHHHHHHHTCHHHHH
T ss_pred HcCCCHHHHHHHHcCCHHHHH
Confidence 5999999999997 4666664
No 67
>3ip0_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; alpha beta, ATP-binding, folate biosynthesis, nucleotide-binding; HET: APC HHR HHS; 0.89A {Escherichia coli} PDB: 1eq0_A 1dy3_A* 1ex8_A* 1hka_A 1eqm_A* 1rao_A* 1rb0_A* 2f63_A 2f65_A 1q0n_A* 3ud5_A* 3ude_A* 3udv_A* 4f7v_A* 3kue_A 3hd2_A* 1f9h_A* 1g4c_A 1kbr_A 1hq2_A* ...
Probab=25.40 E-value=36 Score=22.91 Aligned_cols=38 Identities=24% Similarity=0.218 Sum_probs=28.8
Q ss_pred cceeeeeecCCCCC------------ceeccCCcchhhHHHHhHHHHHHH
Q psy14414 17 VSQVSWKPKTKPTG------------DIEYPLKGHQKVAILRNIEKMVAE 54 (76)
Q Consensus 17 ~~sVnfwyk~~P~p------------~I~yPL~~~QKVaImRNIEKML~e 54 (76)
+-.+|-+|.+.|.+ .|+-.|++++=.+.+..||+-++.
T Consensus 33 v~~~S~~YeT~p~g~~~qp~FlN~vv~~~T~l~p~~LL~~l~~IE~~~GR 82 (158)
T 3ip0_A 33 ILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGR 82 (158)
T ss_dssp EEEECCCEEECCSSCSSSCCEEEEEEEEEECSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEeeEEEeCCCCCCcccchheeeeeeccCCCHHHHHHHHHHHHHHhCC
Confidence 34566677776654 367789999999999999987653
No 68
>3d01_A Uncharacterized protein; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; HET: PG5; 1.70A {Agrobacterium tumefaciens str}
Probab=24.88 E-value=39 Score=22.19 Aligned_cols=24 Identities=21% Similarity=0.080 Sum_probs=20.4
Q ss_pred cchhhHHHHhHHHHHHHHh-cChhH
Q psy14414 38 GHQKVAILRNIEKMVAEAL-QNQEE 61 (76)
Q Consensus 38 ~~QKVaImRNIEKML~eAL-~D~~E 61 (76)
..|=..+++||+..|.+|. +|.+.
T Consensus 74 ~~Qa~~~l~ni~~~L~~ag~~~l~~ 98 (165)
T 3d01_A 74 QRAAELCAVNILAQVKAALNGDLSK 98 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCGGG
T ss_pred HHHHHHHHHHHHHHHHHhCCCChhh
Confidence 3577889999999999999 88773
No 69
>2xes_A Protein PAT1 homolog 1; mRNA decapping, P-bodies, RNA binding protein; 2.10A {Homo sapiens} PDB: 2xer_A 2xeq_A
Probab=24.82 E-value=46 Score=23.93 Aligned_cols=21 Identities=24% Similarity=0.134 Sum_probs=15.4
Q ss_pred CCcchhhHHHHhHHHHHHHHh
Q psy14414 36 LKGHQKVAILRNIEKMVAEAL 56 (76)
Q Consensus 36 L~~~QKVaImRNIEKML~eAL 56 (76)
-.+.||-.|+++|||+....|
T Consensus 3 ~~~~~rr~iL~~IE~~Y~~LL 23 (248)
T 2xes_A 3 QDPDKRRKTLVIIEKTYSLLL 23 (248)
T ss_dssp ---CHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHH
Confidence 345688999999999976655
No 70
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=24.77 E-value=70 Score=17.75 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=19.6
Q ss_pred HHHHhcChhHHHHHHHHHHhccc
Q psy14414 52 VAEALQNQEEVSHLMRALVLGRY 74 (76)
Q Consensus 52 L~eAL~D~~EVg~Llr~lVlGRY 74 (76)
|+++|+-+..+..|+..+..||-
T Consensus 62 ia~~l~v~~~~~~l~~~~~~~~~ 84 (86)
T 3eus_A 62 WMAACEGLDVVSEIVATIAEGRA 84 (86)
T ss_dssp HHHHTTCGGGHHHHHHHHHHTCC
T ss_pred HHHHcCCCcHHHHHHHHHHhccc
Confidence 67899999999999998887764
No 71
>3lyb_A Putative endoribonuclease; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.66A {Klebsiella pneumoniae}
Probab=24.23 E-value=31 Score=22.91 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=19.3
Q ss_pred chhhHHHHhHHHHHHHHhcChhH
Q psy14414 39 HQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 39 ~QKVaImRNIEKML~eAL~D~~E 61 (76)
.|=..+++||+..|.+|-++.+.
T Consensus 71 ~Qt~~~l~Ni~aiL~~aG~~l~~ 93 (165)
T 3lyb_A 71 AQSWYVLESIRRTVASAGGQMSD 93 (165)
T ss_dssp HHHHHHHHHHHHHHHTTTCCGGG
T ss_pred HHHHHHHHHHHHHHHHhcCChhH
Confidence 58888999999999998777554
No 72
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=24.02 E-value=87 Score=23.78 Aligned_cols=32 Identities=16% Similarity=0.488 Sum_probs=24.0
Q ss_pred HHHhHHHHHHHHhc-----ChhHHHHHHHHHH-hcccC
Q psy14414 44 ILRNIEKMVAEALQ-----NQEEVSHLMRALV-LGRYT 75 (76)
Q Consensus 44 ImRNIEKML~eAL~-----D~~EVg~Llr~lV-lGRYt 75 (76)
+++-|++.|.++++ |.+|....+..|. .|||-
T Consensus 416 M~~~V~~~L~~i~~~~g~~~~~~A~~~~~~l~~~~RY~ 453 (458)
T 3qfs_A 416 MARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYS 453 (458)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeE
Confidence 56777777777775 4567778888887 88984
No 73
>2zqk_M Putative translocated intimin receptor protein (translocated intimin receptor TIR)...; protein-protein complex; 2.80A {Escherichia coli} PDB: 2zwk_B 1f02_T
Probab=23.61 E-value=16 Score=23.39 Aligned_cols=39 Identities=31% Similarity=0.382 Sum_probs=22.5
Q ss_pred CCCCCccccccceeeeeecCCCCCceeccCCcchhhHHHHhHHHHHHH
Q psy14414 7 SDFENPDLQKVSQVSWKPKTKPTGDIEYPLKGHQKVAILRNIEKMVAE 54 (76)
Q Consensus 7 ~~~~~~~~~~~~sVnfwyk~~P~p~I~yPL~~~QKVaImRNIEKML~e 54 (76)
.-|.|||-|||. .=--|...| ++-=|-.|..+||.--.+
T Consensus 19 eafqnpdnqkvn---ide~gnaip------sg~lkddvvaqi~eqak~ 57 (77)
T 2zqk_M 19 EAFQNPDNQKVN---IDELGNAIP------SGVLKDDVVANIEEQAKA 57 (77)
T ss_dssp HHHTSGGGEEEE---ECTTSCEEE------EEEECHHHHHHHHHHHHH
T ss_pred HHhcCcccceec---ccccCCcCC------cchhhHHHHHHHHHHHHH
Confidence 458999999974 222232222 233366777777765433
No 74
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=23.41 E-value=76 Score=18.62 Aligned_cols=28 Identities=11% Similarity=0.145 Sum_probs=24.1
Q ss_pred cc-CCcchhhHHHHhHHHHHHHHhcChhH
Q psy14414 34 YP-LKGHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 34 yP-L~~~QKVaImRNIEKML~eAL~D~~E 61 (76)
.+ ++..||-++.+-|=+.|.+.||=+.+
T Consensus 65 ~~g~t~eqk~~l~~~i~~~l~~~lgi~~~ 93 (115)
T 2xcz_A 65 IGALDGSRTQEVSELVCGHIEQNLGIPAD 93 (115)
T ss_dssp SSCCCTTHHHHHHHHHHHHHHHHHCCCGG
T ss_pred ecCCCHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 44 78899999999999999999987654
No 75
>2uwj_E Type III export protein PSCE; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=22.43 E-value=30 Score=21.65 Aligned_cols=23 Identities=9% Similarity=0.226 Sum_probs=16.8
Q ss_pred HHHhHHHHHHHHhcChhHHHHHHHH
Q psy14414 44 ILRNIEKMVAEALQNQEEVSHLMRA 68 (76)
Q Consensus 44 ImRNIEKML~eAL~D~~EVg~Llr~ 68 (76)
+|-|+|+.|.. .|+.++-.+-.-
T Consensus 4 mMTnLE~~L~~--~~~~~~~~i~~~ 26 (70)
T 2uwj_E 4 MMTALETRLSV--ADGTHAAALRQR 26 (70)
T ss_dssp CSSHHHHHHTS--SSTHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCHHHHHHHHHH
Confidence 68899998877 677777665443
No 76
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=22.35 E-value=96 Score=24.14 Aligned_cols=33 Identities=15% Similarity=0.471 Sum_probs=25.1
Q ss_pred HHHHhHHHHHHHHhcC-----hhHHHHHHHHHH-hcccC
Q psy14414 43 AILRNIEKMVAEALQN-----QEEVSHLMRALV-LGRYT 75 (76)
Q Consensus 43 aImRNIEKML~eAL~D-----~~EVg~Llr~lV-lGRYt 75 (76)
.+++-|++.|.++++. .++....+..|. .|||-
T Consensus 575 ~M~~~V~~~L~~i~~~~g~~~~~~a~~~~~~l~~~~RY~ 613 (618)
T 3qe2_A 575 NMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYS 613 (618)
T ss_dssp THHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeE
Confidence 4778888888888764 456677888887 89994
No 77
>2otm_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.85A {Shewanella oneidensis} SCOP: d.79.1.1
Probab=21.78 E-value=72 Score=20.66 Aligned_cols=23 Identities=9% Similarity=-0.135 Sum_probs=19.2
Q ss_pred chhhHHHHhHHHHHHHHhcChhH
Q psy14414 39 HQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 39 ~QKVaImRNIEKML~eAL~D~~E 61 (76)
.|=-..+.||+..|.+|.+|.+.
T Consensus 67 ~Qa~~~~~Ni~a~L~~ag~~l~~ 89 (154)
T 2otm_A 67 AACRLATLNAIAQLKQACGELSR 89 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHSSGGG
T ss_pred HHHHHHHHHHHHHHHHcCCCccc
Confidence 46667999999999999987654
No 78
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=21.63 E-value=62 Score=20.17 Aligned_cols=28 Identities=4% Similarity=-0.097 Sum_probs=18.4
Q ss_pred CCCCC-ceeccCCc---ch---hhHHHHhHHHHHH
Q psy14414 26 TKPTG-DIEYPLKG---HQ---KVAILRNIEKMVA 53 (76)
Q Consensus 26 ~~P~p-~I~yPL~~---~Q---KVaImRNIEKML~ 53 (76)
..+.| .|+-|-+. +. |-+|.++|+|.++
T Consensus 70 ~~~~P~Il~IPs~~~~~g~~~~~~~i~~~V~~aiG 104 (109)
T 2d00_A 70 GRDLPVLLPIAGLKEAFQGHDVEGYMRELVRKTIG 104 (109)
T ss_dssp CCCCCEEEEESCGGGGGSSSCHHHHHHHHHHHHHS
T ss_pred CCCCeEEEEECCCcccCCCcchHHHHHHHHHHHhC
Confidence 44455 78888877 44 4567777777654
No 79
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=21.63 E-value=43 Score=22.38 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=21.7
Q ss_pred cCCcchhhHHHHhHHHHHHHHhcC
Q psy14414 35 PLKGHQKVAILRNIEKMVAEALQN 58 (76)
Q Consensus 35 PL~~~QKVaImRNIEKML~eAL~D 58 (76)
.++++|.+.|+.|..|-+.+||.+
T Consensus 30 ~Isp~la~kVL~~FDksi~~aL~~ 53 (121)
T 1nh2_D 30 RIEASLAMRVLETFDKVVAETLKD 53 (121)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999975
No 80
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=21.12 E-value=49 Score=21.32 Aligned_cols=12 Identities=17% Similarity=0.301 Sum_probs=9.3
Q ss_pred hHHHHhHHHHHH
Q psy14414 42 VAILRNIEKMVA 53 (76)
Q Consensus 42 VaImRNIEKML~ 53 (76)
--+++||||+|.
T Consensus 47 ~IM~~NIdkvLe 58 (119)
T 2kog_A 47 DIMRVNVDKVLE 58 (119)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 357789999984
No 81
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=20.65 E-value=75 Score=18.51 Aligned_cols=28 Identities=4% Similarity=-0.033 Sum_probs=24.0
Q ss_pred cc-CCcchhhHHHHhHHHHHHHHhcChhH
Q psy14414 34 YP-LKGHQKVAILRNIEKMVAEALQNQEE 61 (76)
Q Consensus 34 yP-L~~~QKVaImRNIEKML~eAL~D~~E 61 (76)
.+ ++..||-++.+-|=+.|.+.||=+.+
T Consensus 64 ~~g~~~eqk~~l~~~i~~~l~~~lgi~~~ 92 (113)
T 1hfo_A 64 IGGIEPSRNRDHSAKLFDHLNTKLGIPKN 92 (113)
T ss_dssp SSSCSHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred ecCCCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 44 78899999999999999999997654
No 82
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=20.21 E-value=95 Score=18.49 Aligned_cols=26 Identities=15% Similarity=0.113 Sum_probs=16.1
Q ss_pred HHHhHHHHHHHHhcChhHHHHHHHHH
Q psy14414 44 ILRNIEKMVAEALQNQEEVSHLMRAL 69 (76)
Q Consensus 44 ImRNIEKML~eAL~D~~EVg~Llr~l 69 (76)
-+.|||++|..+=.|-..--..++.|
T Consensus 41 qL~rtE~~ld~i~~~~k~aek~l~~L 66 (70)
T 3b5n_C 41 QLNNVEGNLDLMKVQNKVADEKVAEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678888877766655555555444
Done!