RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14414
(76 letters)
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH,
oxygenase, transcription, inhibitor oxoglutarate,
asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens}
PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A*
2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A*
3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A*
...
Length = 349
Score = 50.1 bits (119), Expect = 4e-09
Identities = 29/58 (50%), Positives = 37/58 (63%)
Query: 17 VSQVSWKPKTKPTGDIEYPLKGHQKVAILRNIEKMVAEALQNQEEVSHLMRALVLGRY 74
++ W IEYPLK HQKVAI+RNIEKM+ EAL N +EV L+ ++ GRY
Sbjct: 291 ITVNFWYKGAPTPKRIEYPLKAHQKVAIMRNIEKMLGEALGNPQEVGPLLNTMIKGRY 348
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT
structure initiative; HET: MSE; 1.80A {Pseudomonas
aeruginosa PAO1} SCOP: c.1.15.7
Length = 264
Score = 31.1 bits (70), Expect = 0.019
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 24 PKTKPTGDIEYPLKGHQKVAILRNIEKMVAEALQNQEEVSH 64
P+ IEYPL+G +++ R +A Q QEE H
Sbjct: 222 PEGVARA-IEYPLQGDDLLSLSRRHIAALARLGQPQEERQH 261
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 24.4 bits (54), Expect = 4.5
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 48 IEKMVAEALQNQEE 61
IE+MV EA + + E
Sbjct: 515 IERMVQEAEKYKAE 528
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly
luciferase family, acyl adenylase, amino acid conjug
ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB:
4epm_A* 4eq4_A* 4ewv_A*
Length = 581
Score = 24.2 bits (51), Expect = 5.2
Identities = 4/34 (11%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 43 AILRNIEKMVAEALQNQEEVSHLMRALVLGRYTE 76
+ ++ + + Q+ + L + TE
Sbjct: 16 TFEKQLKDLTSNVKSIQDNL--LEEIITPNTKTE 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 24.2 bits (52), Expect = 5.5
Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 22/61 (36%)
Query: 36 LKGHQKVAI-LRN--------------------IEKMVAEALQNQEEVSHLMRALVLG-R 73
L ++V I L N + K A + +Q + R L R
Sbjct: 360 LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR 419
Query: 74 Y 74
+
Sbjct: 420 F 420
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 23.7 bits (52), Expect = 6.5
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 48 IEKMVAEALQNQEE 61
I+KMV +A N E
Sbjct: 124 IQKMVRDAEANAEA 137
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 23.7 bits (52), Expect = 6.5
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 48 IEKMVAEALQNQEE 61
I+KMV +A N E
Sbjct: 512 IQKMVRDAEANAEA 525
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics,
APC89502.3, peptide binding, chaperone, BIP, PSI-2;
1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Length = 152
Score = 23.7 bits (52), Expect = 6.7
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 48 IEKMVAEALQNQEE 61
I++MV EA + E
Sbjct: 124 IDRMVEEAEKFASE 137
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain,
structural genomics, APC90014. 2, protein structure
initiative; 1.85A {Caenorhabditis elegans}
Length = 152
Score = 23.7 bits (52), Expect = 6.9
Identities = 4/14 (28%), Positives = 9/14 (64%)
Query: 48 IEKMVAEALQNQEE 61
IE+M+ +A + +
Sbjct: 124 IERMINDADKFAAD 137
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics,
APC90015.11, peptide-binding domain, HS 2, protein
structure initiative; 2.39A {Caenorhabditis elegans}
Length = 152
Score = 23.7 bits (52), Expect = 7.1
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 48 IEKMVAEALQNQEE 61
I++MV EA Q ++E
Sbjct: 124 IDRMVHEAKQFEKE 137
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate
binding domain, structural G consortium, SGC, chaperone;
2.80A {Homo sapiens}
Length = 182
Score = 23.7 bits (52), Expect = 7.3
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 48 IEKMVAEALQNQEE 61
IE MV A + EE
Sbjct: 143 IENMVKNAEKYAEE 156
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 23.7 bits (52), Expect = 7.4
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 48 IEKMVAEALQNQEE 61
I++M+ EA +N E
Sbjct: 481 IQRMIKEAEENAEA 494
>2rp4_A Transcription factor P53; DMP53, oligomerization domain,
tetramerizaiton domain, nucleus; NMR {Drosophila
melanogaster}
Length = 76
Score = 22.8 bits (48), Expect = 8.7
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 18 SQVSWKPKTKPTGDIEYPLKGHQKVAILRNIEKMVAEA 55
S W P GD + K +L++IE M+ EA
Sbjct: 8 SAAEWNVSRTPDGDYRLAITCPNKEWLLQSIEGMIKEA 45
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.129 0.367
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,130,511
Number of extensions: 51602
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 17
Length of query: 76
Length of database: 6,701,793
Length adjustment: 45
Effective length of query: 31
Effective length of database: 5,445,348
Effective search space: 168805788
Effective search space used: 168805788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.2 bits)