RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14414
         (76 letters)



>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 335

 Score = 47.6 bits (112), Expect = 8e-09
 Identities = 32/56 (57%), Positives = 40/56 (71%), Gaps = 1/56 (1%)

Query: 20  VSWKPKTKPTG-DIEYPLKGHQKVAILRNIEKMVAEALQNQEEVSHLMRALVLGRY 74
           V++  K  PT   IEYPLK HQKVAI+RNIEKM+ EAL N +EV  L+  ++ GRY
Sbjct: 279 VNFWYKGAPTPKRIEYPLKAHQKVAIMRNIEKMLGEALGNPQEVGPLLNTMIKGRY 334


>d1o3ua_ a.24.16.3 (A:) Hypothetical protein TM0613 {Thermotoga
          maritima [TaxId: 2336]}
          Length = 126

 Score = 24.9 bits (54), Expect = 0.74
 Identities = 6/42 (14%), Positives = 13/42 (30%)

Query: 35 PLKGHQKVAILRNIEKMVAEALQNQEEVSHLMRALVLGRYTE 76
             G+     L  +        +  +    L +A +  RY +
Sbjct: 48 QAWGYSVPDFLGELSSRFEIPEELMDHALELDKACIPTRYPD 89


>d1ozba_ d.33.1.1 (A:) Bacterial protein-export protein SecB
          {Haemophilus influenzae [TaxId: 727]}
          Length = 144

 Score = 23.8 bits (51), Expect = 2.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 9  FENPDLQKVSQVSWKPKTK 27
          FE P+L  + Q  WKPK  
Sbjct: 15 FEAPNLPHIFQQEWKPKLG 33


>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923
           {Corynebacterium glutamicum [TaxId: 1718]}
          Length = 269

 Score = 23.5 bits (50), Expect = 3.0
 Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 31  DIEYPLKGHQKVAILRNIEKMVAEALQNQEEVSHLMRAL 69
           D+  PL   ++ A    + + + E  +   E+  ++ AL
Sbjct: 221 DLNLPLLALERDA--EKVHRQLMEQTEESSEIQRVVGAL 257


>d1qyna_ d.33.1.1 (A:) Bacterial protein-export protein SecB
          {Escherichia coli [TaxId: 562]}
          Length = 134

 Score = 23.3 bits (50), Expect = 3.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 9  FENPDLQKVSQVSWKPKTK 27
          FE P+   V Q  W+P+ K
Sbjct: 15 FEAPNAPHVFQKDWQPEVK 33


>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
          Length = 97

 Score = 22.4 bits (48), Expect = 7.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 48 IEKMVAEALQNQEE 61
          I+KMV +A  N E 
Sbjct: 6  IQKMVRDAEANAEA 19


>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
          (residues 410-1202) {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 760

 Score = 22.5 bits (47), Expect = 8.4
 Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 5/39 (12%)

Query: 34 YPLKGHQKVAILRNIEKMVAEALQNQEEVSHLMRALVLG 72
          YPL+G     +L N+ +  A+ +    E+  + + + L 
Sbjct: 54 YPLRG----KML-NVREASADQILKNAEIQAIKKIMGLQ 87


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.129    0.367 

Gapped
Lambda     K      H
   0.267   0.0544    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 272,445
Number of extensions: 9648
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 10
Length of query: 76
Length of database: 2,407,596
Length adjustment: 43
Effective length of query: 33
Effective length of database: 1,817,206
Effective search space: 59967798
Effective search space used: 59967798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.3 bits)