BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14416
(1065 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q27|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli
pdb|2Q27|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli
pdb|2Q28|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With
Adenosine-5`-Diphosphate
pdb|2Q28|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With
Adenosine-5`-Diphosphate
pdb|2Q29|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With Acetyl Coenzyme A
pdb|2Q29|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With Acetyl Coenzyme A
Length = 564
Score = 220 bits (560), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 143/386 (37%), Positives = 218/386 (56%), Gaps = 46/386 (11%)
Query: 271 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKP 330
+I +ALK I+ ++G+VGIPV ++A Q EGI YIG R+EQ+A YAA A G+LT+KP
Sbjct: 12 HIIVEALKQNNIDTIYGVVGIPVTDMARHAQAEGIRYIGFRHEQSAGYAAAASGFLTQKP 71
Query: 331 GVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGI--GGFQECPQVELARPYC 388
G+CL VS PG L+ +ANA +N +PM++I GS + + G ++E Q+ A+PY
Sbjct: 72 GICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYA 131
Query: 389 KYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQS-ALVPTPKVLEPT 447
K + R +G + +A+R+S G+PG YLD PAN+LA + + AL KV P+
Sbjct: 132 KAAFRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPANVLAATMEKDEALTTIVKVENPS 191
Query: 448 ---LPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLV 504
LP P + A L+ +A+ PL +
Sbjct: 192 PALLPCP--KSVTSAISLLAKAERPL---------------------------------I 216
Query: 505 IIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLL 564
I+GKGAAYSQA+ +L F+ S +PFLP M KG++ D HP +AAR+ AL NAD+V+L
Sbjct: 217 ILGKGAAYSQADEQLREFIESAQIPFLPMSMAKGILEDTHPLSAAAARSFALANADVVML 276
Query: 565 LGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSH 624
+GARLNW+L G+ + ++ + IQ+D+ +E+ ++ AV + D+ ++Q ML+
Sbjct: 277 VGARLNWLLAHGKKG-WAADTQFIQLDIEPQEIDSNRPIAVPVVGDIASSMQ---GMLAE 332
Query: 625 TQRNWSFSATSPWWQELKLKCQTNRQ 650
++N +F+ W L + Q N Q
Sbjct: 333 LKQN-TFTTPLVWRDILNIHKQQNAQ 357
Score = 120 bits (301), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 103/164 (62%), Gaps = 4/164 (2%)
Query: 13 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKP 72
+I +ALK I+ ++G+VGIPV ++A Q EGI YIG R+EQ+A YAA A G+LT+KP
Sbjct: 12 HIIVEALKQNNIDTIYGVVGIPVTDMARHAQAEGIRYIGFRHEQSAGYAAAASGFLTQKP 71
Query: 73 GVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGI--GGFQECPQVELARPYC 130
G+CL VS PG L+ +ANA +N +PM++I GS + + G ++E Q+ A+PY
Sbjct: 72 GICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYA 131
Query: 131 KYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLPRHRLDA 174
K + R +G + +A+R+S G+PG L +LP + L A
Sbjct: 132 KAAFRVNQPQDLGIALARAIRVSVSGRPGGVYL--DLPANVLAA 173
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 168 PRHRLDAGTFGTMXXXXXXXXXXXXYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PR RLD GT+G M G VV ++GDSAFGFSGME+ET+ RY L
Sbjct: 411 PRRRLDCGTWGVMGIGMGYAIGASVTS-----GSPVVAIEGDSAFGFSGMEIETICRYNL 465
Query: 228 PVILVIVNNNGIYGG 242
PV +VI NN GIY G
Sbjct: 466 PVTIVIFNNGGIYRG 480
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 995 PTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSA 1049
PT L RY+K+M F GY TT +++ A+ +Q + +P++IN++I+P+A
Sbjct: 493 PTDLLHHARYDKLMDAFRGVGYNVTTTDELRHALTTGIQ-SRKPTIINVVIDPAA 546
>pdb|2C31|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase In Complex
With The Cofactor Derivative Thiamin-2-Thiazolone
Diphosphate And Adenosine Diphosphate
pdb|2C31|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase In Complex
With The Cofactor Derivative Thiamin-2-Thiazolone
Diphosphate And Adenosine Diphosphate
pdb|2JI6|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp And Oxalyl-Coa
pdb|2JI6|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp And Oxalyl-Coa
pdb|2JI7|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase With Covalent
Reaction Intermediate
pdb|2JI7|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase With Covalent
Reaction Intermediate
pdb|2JI8|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Formyl-Coa
pdb|2JI8|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Formyl-Coa
pdb|2JI9|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp
pdb|2JI9|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp
pdb|2JIB|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Coenzyme-A
pdb|2JIB|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Coenzyme-A
Length = 568
Score = 220 bits (560), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 132/396 (33%), Positives = 211/396 (53%), Gaps = 42/396 (10%)
Query: 259 MSEDYDEELSAN-QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAAC 317
MS D + EL+ V+ ALK I+ ++G+VGIP+ LA Q +G + R+EQ A
Sbjct: 1 MSNDDNVELTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAG 60
Query: 318 YAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGI--GGF 375
YAA GY+ KPGVCL VS PG L+ +A+A NC+PM+++ GS ++ + G +
Sbjct: 61 YAASIAGYIEGKPGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSEREIVDLQQGDY 120
Query: 376 QECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQS 435
+E Q+ +ARP+CK S R +I I + +AVR + G+PG Y+D PA L Q I+
Sbjct: 121 EEMDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAKLFGQTIS-- 178
Query: 436 ALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPT-LPWPGIAELKQASR 494
+++A++L+ K ++P P + +A+
Sbjct: 179 --------------------VEEANKLLF----------KPIDPAPAQIPAEDAIARAAD 208
Query: 495 LILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH 554
LI AK P++++GKGAAY+Q + E+ + V +PFLP M KG++PD HP +A R
Sbjct: 209 LIKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPFLPMGMAKGLLPDNHPQSAAATRAF 268
Query: 555 ALQNADLVLLLGARLNWILHFGRAPRFKSNV-KIIQVDLNAEELHNSVQAAVAIQSDVRL 613
AL D+ +L+GARLNW++ G+ + + K +Q+D+ A E+ ++ A + D++
Sbjct: 269 ALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMDSNQPIAAPVVGDIKS 328
Query: 614 TVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNR 649
V L++ L + A + W LK K N+
Sbjct: 329 AVSLLRKALKGAPK-----ADAEWTGALKAKVDGNK 359
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 97/162 (59%), Gaps = 3/162 (1%)
Query: 1 MSEDYDEELSAN-QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAAC 59
MS D + EL+ V+ ALK I+ ++G+VGIP+ LA Q +G + R+EQ A
Sbjct: 1 MSNDDNVELTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAG 60
Query: 60 YAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGI--GGF 117
YAA GY+ KPGVCL VS PG L+ +A+A NC+PM+++ GS ++ + G +
Sbjct: 61 YAASIAGYIEGKPGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSEREIVDLQQGDY 120
Query: 118 QECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
+E Q+ +ARP+CK S R +I I + +AVR + G+PG
Sbjct: 121 EEMDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGRPG 162
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 9/77 (11%)
Query: 168 PRHRLDAGTFGTMXXXXXXXXXXXXYCNHYAP--GKRVVCVQGDSAFGFSGMELETLVRY 225
PR RLD+GT+G M YC A GK V+ V+GDSAFGFSGMELET+ RY
Sbjct: 416 PRKRLDSGTWGVMGIGMG-------YCVAAAAVTGKPVIAVEGDSAFGFSGMELETICRY 468
Query: 226 RLPVILVIVNNNGIYGG 242
LPV ++I+NN GIY G
Sbjct: 469 NLPVTVIIMNNGGIYKG 485
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 1003 RYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSA 1049
RY+ MM FG GY+ T ++K A+++ + + +P LIN +I+P A
Sbjct: 504 RYDMMMEAFGGKGYVANTPAELKAALEEAV-ASGKPCLINAMIDPDA 549
>pdb|1YBH|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide
Chlorimuron Ethyl
pdb|1YHY|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Metsulfuron Methyl
pdb|1YHZ|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Chlorsulfuron
pdb|1YI0|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Sulfometuron Methyl
pdb|1YI1|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Tribenuron Methyl
pdb|1Z8N|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With An Imidazolinone Herbicide,
Imazaquin
Length = 590
Score = 130 bits (328), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 103/391 (26%), Positives = 178/391 (45%), Gaps = 43/391 (10%)
Query: 264 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMA-CQQEGIHYIGMRNEQAACYAAQA 322
D+ ++ +AL+ QG+E VF G +E+ A + I + R+EQ +AA+
Sbjct: 9 DQPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEG 68
Query: 323 IGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVE 382
+ KPG+C+ SGPG + G+A+A ++ P++ I G + G FQE P VE
Sbjct: 69 YARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVE 128
Query: 383 LARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPK 442
+ R K++ ++ I + +E+A L+T G+PG +D P + I Q +P
Sbjct: 129 VTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKD-----IQQQLAIPN-- 181
Query: 443 VLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAP 502
E + PG + ++ +P P + L+Q RLI E+K P
Sbjct: 182 -WEQAMRLPGY-------------------MSRMPKP----PEDSHLEQIVRLISESKKP 217
Query: 503 LVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH-------A 555
++ +G G S EL FV +P T MG G P + H A
Sbjct: 218 VLYVGGGCLNSS--DELGRFVELTGIPVASTLMGLGSYPXDDELSLHMLGMHGTVYANYA 275
Query: 556 LQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTV 615
++++DL+L G R + + G+ F S KI+ +D+++ E+ + V++ DV+L +
Sbjct: 276 VEHSDLLLAFGVRFDDRVT-GKLEAFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLAL 334
Query: 616 QQLKQMLSHTQRNWSFSATSPWWQELKLKCQ 646
Q + ++L + W EL ++ Q
Sbjct: 335 QGMNKVLENRAEELKLD-FGVWRNELNVQKQ 364
Score = 86.3 bits (212), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 84/159 (52%), Gaps = 1/159 (0%)
Query: 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMA-CQQEGIHYIGMRNEQAACYAAQA 64
D+ ++ +AL+ QG+E VF G +E+ A + I + R+EQ +AA+
Sbjct: 9 DQPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEG 68
Query: 65 IGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVE 124
+ KPG+C+ SGPG + G+A+A ++ P++ I G + G FQE P VE
Sbjct: 69 YARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVE 128
Query: 125 LARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLL 163
+ R K++ ++ I + +E+A L+T G+PG L+
Sbjct: 129 VTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLV 167
>pdb|3E9Y|A Chain A, Arabidopsis Thaliana Acetohydroxyacid Synthase In Complex
With Monosulfuron
pdb|3EA4|A Chain A, Arabidopsis Thaliana Acetohydroxyacid Synthase In Complex
With Monosulfuron-Ester
Length = 584
Score = 130 bits (328), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 103/391 (26%), Positives = 178/391 (45%), Gaps = 43/391 (10%)
Query: 264 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMA-CQQEGIHYIGMRNEQAACYAAQA 322
D+ ++ +AL+ QG+E VF G +E+ A + I + R+EQ +AA+
Sbjct: 8 DQPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEG 67
Query: 323 IGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVE 382
+ KPG+C+ SGPG + G+A+A ++ P++ I G + G FQE P VE
Sbjct: 68 YARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVE 127
Query: 383 LARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPK 442
+ R K++ ++ I + +E+A L+T G+PG +D P + I Q +P
Sbjct: 128 VTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKD-----IQQQLAIPN-- 180
Query: 443 VLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAP 502
E + PG + ++ +P P + L+Q RLI E+K P
Sbjct: 181 -WEQAMRLPGY-------------------MSRMPKP----PEDSHLEQIVRLISESKKP 216
Query: 503 LVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH-------A 555
++ +G G S EL FV +P T MG G P + H A
Sbjct: 217 VLYVGGGCLNSS--DELGRFVELTGIPVATTLMGLGSYPXDDELSLHMLGMHGTVYANYA 274
Query: 556 LQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTV 615
++++DL+L G R + + G+ F S KI+ +D+++ E+ + V++ DV+L +
Sbjct: 275 VEHSDLLLAFGVRFDDRVT-GKLEAFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLAL 333
Query: 616 QQLKQMLSHTQRNWSFSATSPWWQELKLKCQ 646
Q + ++L + W EL ++ Q
Sbjct: 334 QGMNKVLENRAEELKLD-FGVWRNELNVQKQ 363
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 84/159 (52%), Gaps = 1/159 (0%)
Query: 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMA-CQQEGIHYIGMRNEQAACYAAQA 64
D+ ++ +AL+ QG+E VF G +E+ A + I + R+EQ +AA+
Sbjct: 8 DQPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEG 67
Query: 65 IGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVE 124
+ KPG+C+ SGPG + G+A+A ++ P++ I G + G FQE P VE
Sbjct: 68 YARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVE 127
Query: 125 LARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLL 163
+ R K++ ++ I + +E+A L+T G+PG L+
Sbjct: 128 VTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLV 166
>pdb|1N0H|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl
pdb|1N0H|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl
pdb|1T9A|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Tribenuron Methyl
pdb|1T9A|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Tribenuron Methyl
pdb|1T9B|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorsulfuron
pdb|1T9B|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorsulfuron
pdb|1T9C|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Sulfometuron
Methyl
pdb|1T9C|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Sulfometuron
Methyl
pdb|1T9D|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|C Chain C, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|D Chain D, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
Length = 677
Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 93/410 (22%), Positives = 176/410 (42%), Gaps = 49/410 (11%)
Query: 253 IIKKSNMSEDYDEE---LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYI 308
+ KK D D L+ Q+ + + Q ++ VFG G ++ + A + +++
Sbjct: 65 LAKKLRAEPDMDTSFVGLTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFV 124
Query: 309 GMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQD 368
++EQ A + A+ + KPGV LV SGPG + MA+A + PM+V G
Sbjct: 125 LPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQVPTS 184
Query: 369 HEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLL 428
G FQE V ++R K++ ++ + + +A ++T G+PG +D P ++
Sbjct: 185 AIGTDAFQEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDLPKDVT 244
Query: 429 AQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAE 488
A A++ P + TLP + +QL A+ V +
Sbjct: 245 A------AILRNPIPTKTTLPSNAL------NQLTSRAQDEFV--------------MQS 278
Query: 489 LKQASRLILEAKAPLVIIGKGA-AYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNC 547
+ +A+ LI AK P++ +G G ++ L + +P T G G P
Sbjct: 279 INKAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKS 338
Query: 548 VSAARTH-------ALQNADLVLLLGARLNWILHFGRAPRFKSNVK---------IIQVD 591
+ H A+QNADL++ +GAR + + G +F + II +
Sbjct: 339 LDMLGMHGCATANLAVQNADLIIAVGARFDDRV-TGNISKFAPEARRAAAEGRGGIIHFE 397
Query: 592 LNAEELHNSVQAAVAIQSDVRLTV-QQLKQMLSHTQRNWSFSATSPWWQE 640
++ + ++ VQ +A++ D + + + ++ +R+ F+ + W +E
Sbjct: 398 VSPKNINKVVQTQIAVEGDATTNLGKMMSKIFPVKERSEWFAQINKWKKE 447
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 3/162 (1%)
Query: 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGY 67
L+ Q+ + + Q ++ VFG G ++ + A + +++ ++EQ A + A+
Sbjct: 82 LTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYAR 141
Query: 68 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 127
+ KPGV LV SGPG + MA+A + PM+V G G FQE V ++R
Sbjct: 142 ASGKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADVVGISR 201
Query: 128 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLPR 169
K++ ++ + + +A ++T G+PG L+ +LP+
Sbjct: 202 SCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLV--DLPK 241
>pdb|1JSC|A Chain A, Crystal Structure Of The Catalytic Subunit Of Yeast
Acetohydroxyacid Synthase: A Target For Herbicidal
Inhibitors
pdb|1JSC|B Chain B, Crystal Structure Of The Catalytic Subunit Of Yeast
Acetohydroxyacid Synthase: A Target For Herbicidal
Inhibitors
Length = 630
Score = 99.8 bits (247), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 93/410 (22%), Positives = 176/410 (42%), Gaps = 49/410 (11%)
Query: 253 IIKKSNMSEDYDEE---LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYI 308
+ KK D D L+ Q+ + + Q ++ VFG G ++ + A + +++
Sbjct: 18 LAKKLRAEPDMDTSFVGLTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFV 77
Query: 309 GMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQD 368
++EQ A + A+ + KPGV LV SGPG + MA+A + PM+V G
Sbjct: 78 LPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQVPTS 137
Query: 369 HEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLL 428
G FQE V ++R K++ ++ + + +A ++T G+PG +D P ++
Sbjct: 138 AIGTDAFQEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDLPKDVT 197
Query: 429 AQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAE 488
A A++ P + TLP + +QL A+ V +
Sbjct: 198 A------AILRNPIPTKTTLPSNAL------NQLTSRAQDEFV--------------MQS 231
Query: 489 LKQASRLILEAKAPLVIIGKGA-AYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNC 547
+ +A+ LI AK P++ +G G ++ L + +P T G G P
Sbjct: 232 INKAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKS 291
Query: 548 VSAARTH-------ALQNADLVLLLGARLNWILHFGRAPRFKSNVK---------IIQVD 591
+ H A+QNADL++ +GAR + + G +F + II +
Sbjct: 292 LDMLGMHGCATANLAVQNADLIIAVGARFDDRV-TGNISKFAPEARRAAAEGRGGIIHFE 350
Query: 592 LNAEELHNSVQAAVAIQSDVRLTV-QQLKQMLSHTQRNWSFSATSPWWQE 640
++ + ++ VQ +A++ D + + + ++ +R+ F+ + W +E
Sbjct: 351 VSPKNINKVVQTQIAVEGDATTNLGKMMSKIFPVKERSEWFAQINKWKKE 400
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 3/162 (1%)
Query: 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGY 67
L+ Q+ + + Q ++ VFG G ++ + A + +++ ++EQ A + A+
Sbjct: 35 LTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYAR 94
Query: 68 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 127
+ KPGV LV SGPG + MA+A + PM+V G G FQE V ++R
Sbjct: 95 ASGKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADVVGISR 154
Query: 128 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLPR 169
K++ ++ + + +A ++T G+PG L+ +LP+
Sbjct: 155 SCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLV--DLPK 194
>pdb|1POX|A Chain A, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
pdb|1POX|B Chain B, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
Length = 585
Score = 99.4 bits (246), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 91/382 (23%), Positives = 166/382 (43%), Gaps = 58/382 (15%)
Query: 269 ANQVIAQALKFQGIEYVFGIVG--IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL 326
A + + L+ G+++++GI G I I A++ +++ IHYI +R+E+ AA A L
Sbjct: 5 AGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKL 64
Query: 327 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARP 386
T K GVC +GPG H G+ +A+ + P+L + G + FQE + +
Sbjct: 65 TGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYAD 124
Query: 387 YCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLE- 445
Y+ N + +++A+R + GV+ + P +L Q+I+ + +
Sbjct: 125 VADYNVTAVNAATLPHVIDEAIR-RAYAHQGVAVVQIPVDLPWQQISAEDWYASANNYQT 183
Query: 446 PTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505
P LP P + + + +Q +L A + PL+
Sbjct: 184 PLLPEPDVQAVTRLTQTLLAA---------------------------------ERPLIY 210
Query: 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAAR-------THALQN 558
G GA + E E LS + +P + T KG+V D +P + +A AL
Sbjct: 211 YGIGARKAGKELEQLS--KTLKIPLMSTYPAKGIVADRYPAYLGSANRVAQKPANEALAQ 268
Query: 559 ADLVLLLGARLNWILHFGRAPR-FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQ 617
AD+VL +G F + FK+ +Q+D++ +L + +A+ +D + T+
Sbjct: 269 ADVVLFVGNN----YPFAEVSKAFKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTLAA 324
Query: 618 LKQMLSHTQRNWSFSATSPWWQ 639
+ +S + ++PWWQ
Sbjct: 325 ILAQVSERE-------STPWWQ 339
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 2/143 (1%)
Query: 11 ANQVIAQALKFQGIEYVFGIVG--IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL 68
A + + L+ G+++++GI G I I A++ +++ IHYI +R+E+ AA A L
Sbjct: 5 AGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKL 64
Query: 69 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARP 128
T K GVC +GPG H G+ +A+ + P+L + G + FQE + +
Sbjct: 65 TGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYAD 124
Query: 129 YCKYSARPPNIHLIGQHVEKAVR 151
Y+ N + +++A+R
Sbjct: 125 VADYNVTAVNAATLPHVIDEAIR 147
>pdb|1POW|A Chain A, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
pdb|1POW|B Chain B, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
Length = 585
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/382 (23%), Positives = 164/382 (42%), Gaps = 58/382 (15%)
Query: 269 ANQVIAQALKFQGIEYVFGIVG--IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL 326
A + + L+ G+++++GI G I I A++ +++ IHYI +R+E+ AA A L
Sbjct: 5 AGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKL 64
Query: 327 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARP 386
T K GVC +GPG H G+ +A+ + P+L + G + FQE + +
Sbjct: 65 TGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYAD 124
Query: 387 YCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLE- 445
Y+ N + +++A+R + GV+ + P +L Q+I + +
Sbjct: 125 VADYNVTAVNAATLPHVIDEAIR-RAYAHQGVAVVQIPVDLPWQQIPAEDWYASANSYQT 183
Query: 446 PTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505
P LP P + + + +Q +L A+ PL+ G
Sbjct: 184 PLLPEPDVQAVTRLTQTLLAAERPLIYYG------------------------------- 212
Query: 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAAR-------THALQN 558
IG +A EL + +P + T KG+V D +P + +A AL
Sbjct: 213 IGA----RKAGKELEQLSKTLKIPLMSTYPAKGIVADRYPAYLGSANRVAQKPANEALAQ 268
Query: 559 ADLVLLLGARLNWILHFGRAPR-FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQ 617
AD+VL +G F + FK+ +Q+D++ +L + +A+ +D + T+
Sbjct: 269 ADVVLFVGNN----YPFAEVSKAFKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTLAA 324
Query: 618 LKQMLSHTQRNWSFSATSPWWQ 639
+ +S + ++PWWQ
Sbjct: 325 ILAQVSERE-------STPWWQ 339
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 2/143 (1%)
Query: 11 ANQVIAQALKFQGIEYVFGIVG--IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL 68
A + + L+ G+++++GI G I I A++ +++ IHYI +R+E+ AA A L
Sbjct: 5 AGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKL 64
Query: 69 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARP 128
T K GVC +GPG H G+ +A+ + P+L + G + FQE + +
Sbjct: 65 TGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYAD 124
Query: 129 YCKYSARPPNIHLIGQHVEKAVR 151
Y+ N + +++A+R
Sbjct: 125 VADYNVTAVNAATLPHVIDEAIR 147
>pdb|4FEE|A Chain A, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal B
pdb|4FEE|B Chain B, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal B
pdb|4FEG|A Chain A, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal A
pdb|4FEG|B Chain B, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal A
Length = 603
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/392 (23%), Positives = 168/392 (42%), Gaps = 58/392 (14%)
Query: 259 MSEDYDEELSANQVIAQALKFQGIEYVFGIVG--IPVIELAMACQQEGIHYIGMRNEQAA 316
M + + A + + L+ G+++++GI G I I A++ +++ IHYI +R+E+
Sbjct: 3 MKQTKQTNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVG 62
Query: 317 CYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQ 376
AA A LT K GVC +GPG H G+ +A+ + P+L + G + FQ
Sbjct: 63 AMAAAADAKLTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQ 122
Query: 377 ECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSA 436
E + + Y+ N + +++A+R + GV+ + P +L Q+I
Sbjct: 123 EMNENPIYADVADYNVTAVNAATLPHVIDEAIR-RAYAHQGVAVVQIPVDLPWQQIPAED 181
Query: 437 LVPTPKVLE-PTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRL 495
+ + P LP P + + + +Q +L A
Sbjct: 182 WYASANSYQTPLLPEPDVQAVTRLTQTLLAA----------------------------- 212
Query: 496 ILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAAR--- 552
+ PL+ G GA + E E LS + +P + T KG+V D +P + +A
Sbjct: 213 ----ERPLIYYGIGARKAGKELEQLS--KTLKIPLMSTYPAKGIVADRYPAYLGSANRVA 266
Query: 553 ----THALQNADLVLLLGARLNWILHFGRAPR-FKSNVKIIQVDLNAEELHNSVQAAVAI 607
AL AD+VL +G F + FK+ +Q+D++ +L + +A+
Sbjct: 267 QKPANEALAQADVVLFVGNN----YPFAEVSKAFKNTRYFLQIDIDPAKLGKRHKTDIAV 322
Query: 608 QSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQ 639
+D + T+ + +S + ++PWWQ
Sbjct: 323 LADAQKTLAAILAQVSERE-------STPWWQ 347
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 2/153 (1%)
Query: 1 MSEDYDEELSANQVIAQALKFQGIEYVFGIVG--IPVIELAMACQQEGIHYIGMRNEQAA 58
M + + A + + L+ G+++++GI G I I A++ +++ IHYI +R+E+
Sbjct: 3 MKQTKQTNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVG 62
Query: 59 CYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQ 118
AA A LT K GVC +GPG H G+ +A+ + P+L + G + FQ
Sbjct: 63 AMAAAADAKLTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQ 122
Query: 119 ECPQVELARPYCKYSARPPNIHLIGQHVEKAVR 151
E + + Y+ N + +++A+R
Sbjct: 123 EMNENPIYADVADYNVTAVNAATLPHVIDEAIR 155
>pdb|2EZ4|A Chain A, Pyruvate Oxidase Variant F479w
pdb|2EZ4|B Chain B, Pyruvate Oxidase Variant F479w
pdb|2EZ8|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Lactyl-Thiamin Diphosphate
pdb|2EZ8|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Lactyl-Thiamin Diphosphate
pdb|2EZ9|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate Analogue 2-Phosphonolactyl-Thiamin
Diphosphate
pdb|2EZ9|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate Analogue 2-Phosphonolactyl-Thiamin
Diphosphate
pdb|2EZT|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Hydroxyethyl-Thiamin Diphosphate
pdb|2EZT|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Hydroxyethyl-Thiamin Diphosphate
pdb|2EZU|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Acetyl-Thiamin Diphosphate
pdb|2EZU|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Acetyl-Thiamin Diphosphate
Length = 603
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/392 (23%), Positives = 167/392 (42%), Gaps = 58/392 (14%)
Query: 259 MSEDYDEELSANQVIAQALKFQGIEYVFGIVG--IPVIELAMACQQEGIHYIGMRNEQAA 316
M + + A + + L+ G+++++GI G I I A++ +++ IHYI +R+E+
Sbjct: 3 MKQTKQTNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVG 62
Query: 317 CYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQ 376
AA A LT K GVC +GPG H G+ +A+ + P+L + G + FQ
Sbjct: 63 AMAAAADAKLTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQ 122
Query: 377 ECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSA 436
E + + Y+ N + +++A+R + GV+ + P +L Q+I
Sbjct: 123 EMNENPIYADVADYNVTAVNAATLPHVIDEAIR-RAYAHQGVAVVQIPVDLPWQQIPAED 181
Query: 437 LVPTPKVLE-PTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRL 495
+ + P LP P + + + +Q +L A+ PL+ G
Sbjct: 182 WYASANSYQTPLLPEPDVQAVTRLTQTLLAAERPLIYYG--------------------- 220
Query: 496 ILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAAR--- 552
IG +A EL + +P + T KG+V D +P + +A
Sbjct: 221 ----------IGA----RKAGKELEQLSKTLKIPLMSTYPAKGIVADRYPAYLGSANRVA 266
Query: 553 ----THALQNADLVLLLGARLNWILHFGRAPR-FKSNVKIIQVDLNAEELHNSVQAAVAI 607
AL AD+VL +G F + FK+ +Q+D++ +L + +A+
Sbjct: 267 QKPANEALAQADVVLFVGNN----YPFAEVSKAFKNTRYFLQIDIDPAKLGKRHKTDIAV 322
Query: 608 QSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQ 639
+D + T+ + +S + ++PWWQ
Sbjct: 323 LADAQKTLAAILAQVSERE-------STPWWQ 347
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 2/153 (1%)
Query: 1 MSEDYDEELSANQVIAQALKFQGIEYVFGIVG--IPVIELAMACQQEGIHYIGMRNEQAA 58
M + + A + + L+ G+++++GI G I I A++ +++ IHYI +R+E+
Sbjct: 3 MKQTKQTNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVG 62
Query: 59 CYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQ 118
AA A LT K GVC +GPG H G+ +A+ + P+L + G + FQ
Sbjct: 63 AMAAAADAKLTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQ 122
Query: 119 ECPQVELARPYCKYSARPPNIHLIGQHVEKAVR 151
E + + Y+ N + +++A+R
Sbjct: 123 EMNENPIYADVADYNVTAVNAATLPHVIDEAIR 155
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 17/93 (18%)
Query: 199 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWL-DIIKKS 257
P ++V + GD + +L T V+Y LPVI V+ F Y W+ D + +
Sbjct: 437 PERQVFNLAGDGGASMTMQDLATQVQYHLPVINVV---------FTNCQYGWIKDEQEDT 487
Query: 258 NMSE-------DYDEELSANQVIAQALKFQGIE 283
N ++ D D A+ V QA + IE
Sbjct: 488 NQNDFIGVEFNDIDFSKIADGVHMQAFRVNKIE 520
>pdb|1Y9D|A Chain A, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|B Chain B, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|C Chain C, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|D Chain D, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
Length = 603
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/392 (23%), Positives = 168/392 (42%), Gaps = 58/392 (14%)
Query: 259 MSEDYDEELSANQVIAQALKFQGIEYVFGIVG--IPVIELAMACQQEGIHYIGMRNEQAA 316
M + + A + + L+ G+++++GI G I I A++ +++ IHYI +R+E+
Sbjct: 3 MKQTKQTNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVG 62
Query: 317 CYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQ 376
AA A LT K GVC +GPG H G+ +A+ + P+L + G + FQ
Sbjct: 63 AMAAAADAKLTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQ 122
Query: 377 ECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSA 436
E + + Y+ N + +++A+R + GV+ + P +L Q+I
Sbjct: 123 EMNENPIYADVADYNVTAVNAATLPHVIDEAIR-RAYAHQGVAVVQIPVDLPWQQIPAED 181
Query: 437 LVPTPKVLE-PTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRL 495
+ + P LP P + + + +Q +L A
Sbjct: 182 WYASANSYQTPLLPEPDVQAVTRLTQTLLAA----------------------------- 212
Query: 496 ILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAAR--- 552
+ PL+ G GA + E E LS + +P + T KG+V D +P + +A
Sbjct: 213 ----ERPLIYYGIGARKAGKELEQLS--KTLKIPLMSTYPAKGIVADRYPAYLGSANRAA 266
Query: 553 ----THALQNADLVLLLGARLNWILHFGRAPR-FKSNVKIIQVDLNAEELHNSVQAAVAI 607
AL AD+VL +G F + FK+ +Q+D++ +L + +A+
Sbjct: 267 QKPANEALAQADVVLFVGNN----YPFAEVSKAFKNTRYFLQIDIDPAKLGKRHKTDIAV 322
Query: 608 QSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQ 639
+D + T+ + +S + ++PWWQ
Sbjct: 323 LADAQKTLAAILAQVSERE-------STPWWQ 347
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 2/153 (1%)
Query: 1 MSEDYDEELSANQVIAQALKFQGIEYVFGIVG--IPVIELAMACQQEGIHYIGMRNEQAA 58
M + + A + + L+ G+++++GI G I I A++ +++ IHYI +R+E+
Sbjct: 3 MKQTKQTNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVG 62
Query: 59 CYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQ 118
AA A LT K GVC +GPG H G+ +A+ + P+L + G + FQ
Sbjct: 63 AMAAAADAKLTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQ 122
Query: 119 ECPQVELARPYCKYSARPPNIHLIGQHVEKAVR 151
E + + Y+ N + +++A+R
Sbjct: 123 EMNENPIYADVADYNVTAVNAATLPHVIDEAIR 155
>pdb|3IAF|A Chain A, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
pdb|3IAF|B Chain B, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
pdb|3IAF|C Chain C, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
pdb|3IAF|D Chain D, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
Length = 570
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 98/355 (27%), Positives = 162/355 (45%), Gaps = 28/355 (7%)
Query: 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL 326
++ +++ + L G+E++FG+ G + + AC + I R+E AA +AA+
Sbjct: 4 ITGGELVVRTLIKAGVEHLFGLHGXHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYARA 63
Query: 327 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE-CPQVELAR 385
K GV LV +G G + +ANA ++ P+L + GS A + Q QV +A
Sbjct: 64 GAKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAA 123
Query: 386 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLE 445
P K++ R I + V +A+R + G LD P ++L +I++ +++ VL
Sbjct: 124 PITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWDILMNQIDEDSVIIPDLVLS 183
Query: 446 PTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505
P A+L QA L+ +A+ P++++G +ASR + +
Sbjct: 184 AHGARPDPADLDQALALLRKAERPVIVLG---------------SEASRTARKTALSAFV 228
Query: 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLL 565
G A+ E LS ++ LP M G+V N S A+ A DLVL+L
Sbjct: 229 AATGVPVF-ADYEGLSMLSG-----LPDAMRGGLV----QNLYSFAKADA--APDLVLML 276
Query: 566 GARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQ 620
GAR G + ++IQVD +A EL A+ I +DV T++ L Q
Sbjct: 277 GARFGLNTGHGSGQLIPHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALAQ 331
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 3/161 (1%)
Query: 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL 68
++ +++ + L G+E++FG+ G + + AC + I R+E AA +AA+
Sbjct: 4 ITGGELVVRTLIKAGVEHLFGLHGXHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYARA 63
Query: 69 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE-CPQVELAR 127
K GV LV +G G + +ANA ++ P+L + GS A + Q QV +A
Sbjct: 64 GAKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAA 123
Query: 128 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLP 168
P K++ R I + V +A+R + G LL +LP
Sbjct: 124 PITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLL--DLP 162
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 28/38 (73%)
Query: 200 GKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNN 237
G+R + V GD + G+S E +TLVR +LP+I++I+NN
Sbjct: 439 GRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVIIMNNQ 476
>pdb|3D7K|A Chain A, Crystal Structure Of Benzaldehyde Lyase In Complex With
The Inhibitor Mbp
pdb|3D7K|B Chain B, Crystal Structure Of Benzaldehyde Lyase In Complex With
The Inhibitor Mbp
Length = 570
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 98/355 (27%), Positives = 162/355 (45%), Gaps = 28/355 (7%)
Query: 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL 326
++ +++ + L G+E++FG+ G + + AC + I R+E AA +AA+
Sbjct: 4 ITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYARA 63
Query: 327 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE-CPQVELAR 385
K GV LV +G G + +ANA ++ P+L + GS A + Q QV +A
Sbjct: 64 GAKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAA 123
Query: 386 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLE 445
P K++ R I + V +A+R + G LD P ++L +I++ +++ VL
Sbjct: 124 PITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWDILMNQIDEDSVIIPDLVLS 183
Query: 446 PTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505
P A+L QA L+ +A+ P++++G +ASR + +
Sbjct: 184 AHGARPDPADLDQALALLRKAERPVIVLG---------------SEASRTARKTALSAFV 228
Query: 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLL 565
G A+ E LS ++ LP M G+V N S A+ A DLVL+L
Sbjct: 229 AATGVPVF-ADYEGLSMLSG-----LPDAMRGGLV----QNLYSFAKADA--APDLVLML 276
Query: 566 GARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQ 620
GAR G + ++IQVD +A EL A+ I +DV T++ L Q
Sbjct: 277 GARFGLNTGHGSGQLIPHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALAQ 331
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 3/161 (1%)
Query: 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL 68
++ +++ + L G+E++FG+ G + + AC + I R+E AA +AA+
Sbjct: 4 ITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYARA 63
Query: 69 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE-CPQVELAR 127
K GV LV +G G + +ANA ++ P+L + GS A + Q QV +A
Sbjct: 64 GAKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAA 123
Query: 128 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLP 168
P K++ R I + V +A+R + G LL +LP
Sbjct: 124 PITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLL--DLP 162
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 28/38 (73%)
Query: 200 GKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNN 237
G+R + V GD + G+S E +TLVR +LP+I++I+NN
Sbjct: 439 GRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVIIMNNQ 476
>pdb|2AG0|A Chain A, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2AG0|B Chain B, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2AG0|C Chain C, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2AG0|D Chain D, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2UZ1|A Chain A, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
pdb|2UZ1|D Chain D, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
Length = 563
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 98/355 (27%), Positives = 162/355 (45%), Gaps = 28/355 (7%)
Query: 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL 326
++ +++ + L G+E++FG+ G + + AC + I R+E AA +AA+
Sbjct: 4 ITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYARA 63
Query: 327 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE-CPQVELAR 385
K GV LV +G G + +ANA ++ P+L + GS A + Q QV +A
Sbjct: 64 GAKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAA 123
Query: 386 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLE 445
P K++ R I + V +A+R + G LD P ++L +I++ +++ VL
Sbjct: 124 PITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWDILMNQIDEDSVIIPDLVLS 183
Query: 446 PTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505
P A+L QA L+ +A+ P++++G +ASR + +
Sbjct: 184 AHGARPDPADLDQALALLRKAERPVIVLG---------------SEASRTARKTALSAFV 228
Query: 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLL 565
G A+ E LS ++ LP M G+V N S A+ A DLVL+L
Sbjct: 229 AATGVPVF-ADYEGLSMLSG-----LPDAMRGGLV----QNLYSFAKADA--APDLVLML 276
Query: 566 GARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQ 620
GAR G + ++IQVD +A EL A+ I +DV T++ L Q
Sbjct: 277 GARFGLNTGHGSGQLIPHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALAQ 331
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 3/161 (1%)
Query: 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL 68
++ +++ + L G+E++FG+ G + + AC + I R+E AA +AA+
Sbjct: 4 ITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYARA 63
Query: 69 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE-CPQVELAR 127
K GV LV +G G + +ANA ++ P+L + GS A + Q QV +A
Sbjct: 64 GAKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAA 123
Query: 128 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLP 168
P K++ R I + V +A+R + G LL +LP
Sbjct: 124 PITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLL--DLP 162
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 28/38 (73%)
Query: 200 GKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNN 237
G+R + V GD + G+S E +TLVR +LP+I++I+NN
Sbjct: 439 GRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVIIMNNQ 476
>pdb|2UZ1|B Chain B, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
pdb|2UZ1|C Chain C, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
Length = 563
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 98/355 (27%), Positives = 162/355 (45%), Gaps = 28/355 (7%)
Query: 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL 326
++ +++ + L G+E++FG+ G + + AC + I R+E AA +AA+
Sbjct: 4 ITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYARA 63
Query: 327 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE-CPQVELAR 385
K GV LV +G G + +ANA ++ P+L + GS A + Q QV +A
Sbjct: 64 GAKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAA 123
Query: 386 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLE 445
P K++ R I + V +A+R + G LD P ++L +I++ +++ VL
Sbjct: 124 PITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWDILMNQIDEDSVIIPDLVLS 183
Query: 446 PTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505
P A+L QA L+ +A+ P++++G +ASR + +
Sbjct: 184 AHGARPDPADLDQALALLRKAERPVIVLG---------------SEASRTARKTALSAFV 228
Query: 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLL 565
G A+ E LS ++ LP M G+V N S A+ A DLVL+L
Sbjct: 229 AATGVPVF-ADYEGLSMLSG-----LPDAMRGGLV----QNLYSFAKADA--APDLVLML 276
Query: 566 GARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQ 620
GAR G + ++IQVD +A EL A+ I +DV T++ L Q
Sbjct: 277 GARFGLNTGHGSGQLIPHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALAQ 331
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 3/161 (1%)
Query: 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL 68
++ +++ + L G+E++FG+ G + + AC + I R+E AA +AA+
Sbjct: 4 ITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYARA 63
Query: 69 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE-CPQVELAR 127
K GV LV +G G + +ANA ++ P+L + GS A + Q QV +A
Sbjct: 64 GAKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAA 123
Query: 128 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLP 168
P K++ R I + V +A+R + G LL +LP
Sbjct: 124 PITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLL--DLP 162
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 28/38 (73%)
Query: 200 GKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNN 237
G+R + V GD + G+S E +TLVR +LP+I++I+NN
Sbjct: 439 GRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVIIMNNQ 476
>pdb|3IAE|A Chain A, Structure Of Benzaldehyde Lyase A28s Mutant With
Benzoylphosphonate
pdb|3IAE|B Chain B, Structure Of Benzaldehyde Lyase A28s Mutant With
Benzoylphosphonate
Length = 570
Score = 93.2 bits (230), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 98/355 (27%), Positives = 162/355 (45%), Gaps = 28/355 (7%)
Query: 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL 326
++ +++ + L G+E++FG+ G + + AC + I R+E AA +AA+
Sbjct: 4 ITGGELVVRTLIKAGVEHLFGLHGSHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYARA 63
Query: 327 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE-CPQVELAR 385
K GV LV +G G + +ANA ++ P+L + GS A + Q QV +A
Sbjct: 64 GAKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAA 123
Query: 386 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLE 445
P K++ R I + V +A+R + G LD P ++L +I++ +++ VL
Sbjct: 124 PITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWDILMNQIDEDSVIIPDLVLS 183
Query: 446 PTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505
P A+L QA L+ +A+ P++++G +ASR + +
Sbjct: 184 AHGARPDPADLDQALALLRKAERPVIVLG---------------SEASRTARKTALSAFV 228
Query: 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLL 565
G A+ E LS ++ LP M G+V N S A+ A DLVL+L
Sbjct: 229 AATGVPVF-ADYEGLSMLSG-----LPDAMRGGLV----QNLYSFAKADA--APDLVLML 276
Query: 566 GARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQ 620
GAR G + ++IQVD +A EL A+ I +DV T++ L Q
Sbjct: 277 GARFGLNTGHGSGQLIPHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALAQ 331
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 3/161 (1%)
Query: 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL 68
++ +++ + L G+E++FG+ G + + AC + I R+E AA +AA+
Sbjct: 4 ITGGELVVRTLIKAGVEHLFGLHGSHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYARA 63
Query: 69 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE-CPQVELAR 127
K GV LV +G G + +ANA ++ P+L + GS A + Q QV +A
Sbjct: 64 GAKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAA 123
Query: 128 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLP 168
P K++ R I + V +A+R + G LL +LP
Sbjct: 124 PITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLL--DLP 162
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 28/38 (73%)
Query: 200 GKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNN 237
G+R + V GD + G+S E +TLVR +LP+I++I+NN
Sbjct: 439 GRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVIIMNNQ 476
>pdb|2AG1|A Chain A, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet
pdb|2AG1|B Chain B, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet
pdb|2AG1|C Chain C, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet
pdb|2AG1|D Chain D, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet
Length = 563
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 159/355 (44%), Gaps = 28/355 (7%)
Query: 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL 326
++ +++ + L G+E++FG+ G + + AC + I R+E AA +AA+
Sbjct: 4 ITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYARA 63
Query: 327 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE-CPQVELAR 385
K GV LV +G G + +ANA ++ P+L + GS A + Q QV A
Sbjct: 64 GAKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAXAA 123
Query: 386 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLE 445
P K++ R I + V +A+R + G LD P ++L +I++ +++ VL
Sbjct: 124 PITKWAHRVXATEHIPRLVXQAIRAALSAPRGPVLLDLPWDILXNQIDEDSVIIPDLVLS 183
Query: 446 PTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505
P A+L QA L+ +A+ P++++G +ASR + +
Sbjct: 184 AHGARPDPADLDQALALLRKAERPVIVLG---------------SEASRTARKTALSAFV 228
Query: 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLL 565
G A+ E LS ++ LP G+V N S A+ A DLVL L
Sbjct: 229 AATGVPVF-ADYEGLSXLSG-----LPDAXRGGLV----QNLYSFAKADAAP--DLVLXL 276
Query: 566 GARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQ 620
GAR G + ++IQVD +A EL A+ I +DV T++ L Q
Sbjct: 277 GARFGLNTGHGSGQLIPHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALAQ 331
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 3/161 (1%)
Query: 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL 68
++ +++ + L G+E++FG+ G + + AC + I R+E AA +AA+
Sbjct: 4 ITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYARA 63
Query: 69 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE-CPQVELAR 127
K GV LV +G G + +ANA ++ P+L + GS A + Q QV A
Sbjct: 64 GAKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAXAA 123
Query: 128 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLP 168
P K++ R I + V +A+R + G LL +LP
Sbjct: 124 PITKWAHRVXATEHIPRLVXQAIRAALSAPRGPVLL--DLP 162
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 200 GKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNN 237
G+R + V GD + G+S E +TLVR +LP+I++I NN
Sbjct: 439 GRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVIIXNNQ 476
>pdb|1OZG|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactor And
With An Unusual Intermediate
pdb|1OZG|B Chain B, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactor And
With An Unusual Intermediate
pdb|1OZH|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZH|B Chain B, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZH|C Chain C, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZH|D Chain D, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZF|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactors
pdb|1OZF|B Chain B, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactors
Length = 566
Score = 79.7 bits (195), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 101/206 (49%), Gaps = 4/206 (1%)
Query: 269 ANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTK 328
A+ V++Q L+ QG+ VFGI G + ++ + I I +R+E A + A A+G +T
Sbjct: 14 ADLVVSQ-LEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANAAFMAAAVGRITG 72
Query: 329 KPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYC 388
K GV LV SGPG + GMA A P++ +GG+ + + Q V + P
Sbjct: 73 KAGVALVTSGPGCSNLITGMATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAMFSPVT 132
Query: 389 KYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEPTL 448
KY+ + + V A R + G+PG +++ P +++ ++ L P P +
Sbjct: 133 KYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQDVVDGPVSGKVL---PASGAPQM 189
Query: 449 PWPGIAELKQASQLILEAKAPLVIIG 474
+ Q ++LI +AK P+ ++G
Sbjct: 190 GAAPDDAIDQVAKLIAQAKNPIFLLG 215
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 3/170 (1%)
Query: 11 ANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTK 70
A+ V++Q L+ QG+ VFGI G + ++ + I I +R+E A + A A+G +T
Sbjct: 14 ADLVVSQ-LEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANAAFMAAAVGRITG 72
Query: 71 KPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYC 130
K GV LV SGPG + GMA A P++ +GG+ + + Q V + P
Sbjct: 73 KAGVALVTSGPGCSNLITGMATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAMFSPVT 132
Query: 131 KYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLPRHRLDAGTFGTM 180
KY+ + + V A R + G+PG + + +LP+ +D G +
Sbjct: 133 KYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFV--SLPQDVVDGPVSGKV 180
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 199 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNG 238
P ++VV V GD F S MELET VR + V+ +I +NG
Sbjct: 437 PERKVVSVSGDGGFLQSSMELETAVRLKANVLHLIWVDNG 476
>pdb|2PAN|A Chain A, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|B Chain B, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|C Chain C, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|D Chain D, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|E Chain E, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|F Chain F, Crystal Structure Of E. Coli Glyoxylate Carboligase
Length = 616
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 81/381 (21%), Positives = 144/381 (37%), Gaps = 46/381 (12%)
Query: 277 LKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTK-KPGVCL 334
L+ +GI FG+ G + A ++ G I +I R+ + A + A+ T GVCL
Sbjct: 37 LEKEGITTAFGVPGAAINPFYSAXRKHGGIRHILARHVEGASHXAEGYTRATAGNIGVCL 96
Query: 335 VVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARP 394
SGP + +A + P+L I G + FQ +A+P K +
Sbjct: 97 GTSGPAGTDXITALYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKXAVTV 156
Query: 395 PNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIA 454
L+ + +++A L G+PG +D P ++ I P EP
Sbjct: 157 REAALVPRVLQQAFHLXRSGRPGPVLVDLPFDVQVAEIEFD-----PDXYEP-------- 203
Query: 455 ELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVIIGKGAAYSQ 514
L P ++++A +++A+ P+++ G G +
Sbjct: 204 ----------------------LPVYKPAASRXQIEKAVEXLIQAERPVIVAGGGVINAD 241
Query: 515 AETELLSFVNSFNLPFLPTPMGKGVVPDAH---PNCVSAARTHALQNA-----DLVLLLG 566
A L F ++P +PT G G +PD H V H NA D V +G
Sbjct: 242 AAALLQQFAELTSVPVIPTLXGWGCIPDDHELXAGXVGLQTAHRYGNATLLASDXVFGIG 301
Query: 567 ARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQ 626
R H G ++ KI+ +D+ ++ + + I SD + + L ++ Q
Sbjct: 302 NRFAN-RHTGSVEKYTEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVAQEXQ 360
Query: 627 RNWSFSATSPWWQELKLKCQT 647
+ W + + + +T
Sbjct: 361 KAGRLPCRKEWVADCQQRKRT 381
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 4/152 (2%)
Query: 19 LKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTK-KPGVCL 76
L+ +GI FG+ G + A ++ G I +I R+ + A + A+ T GVCL
Sbjct: 37 LEKEGITTAFGVPGAAINPFYSAXRKHGGIRHILARHVEGASHXAEGYTRATAGNIGVCL 96
Query: 77 VVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARP 136
SGP + +A + P+L I G + FQ +A+P K +
Sbjct: 97 GTSGPAGTDXITALYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKXAVTV 156
Query: 137 PNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLP 168
L+ + +++A L G+PG L+ +LP
Sbjct: 157 REAALVPRVLQQAFHLXRSGRPGPVLV--DLP 186
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 14/89 (15%)
Query: 199 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSN 258
P + VV + GD F F EL ++ +P I V+VNN A+L +I++S
Sbjct: 459 PKRNVVAISGDFDFQFLIEELAVGAQFNIPYIHVLVNN------------AYLGLIRQSQ 506
Query: 259 --MSEDYDEELSANQVIAQALKFQGIEYV 285
DY +L+ + + + G+++V
Sbjct: 507 RAFDXDYCVQLAFENINSSEVNGYGVDHV 535
>pdb|3EYA|A Chain A, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|B Chain B, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|C Chain C, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|D Chain D, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|E Chain E, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|F Chain F, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|G Chain G, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|H Chain H, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|I Chain I, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|J Chain J, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|K Chain K, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|L Chain L, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
Length = 549
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 92/357 (25%), Positives = 156/357 (43%), Gaps = 57/357 (15%)
Query: 273 IAQALKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTKKPG 331
IA+ L+ G++ ++G+ G + L+ + + G I ++ R+E+ A +AA A L+ +
Sbjct: 9 IAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSGELA 68
Query: 332 VCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARP---YC 388
VC GPG LH G+ + N P+L I G G FQE EL R YC
Sbjct: 69 VCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYC 128
Query: 389 KYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEPTL 448
+ + P I Q + A+R + + GVS + P ++ AL P P+ T+
Sbjct: 129 ELVSSPEQI---PQVLAIAMRKAVLNR-GVSVVVLPGDV--------ALKPAPE--GATM 174
Query: 449 PWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVIIGK 508
W A P+V P EL++ ++L+ + ++ G
Sbjct: 175 HW-------------YHAPQPVVT-----------PEEEELRKLAQLLRYSSNIALMCGS 210
Query: 509 GAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVS-------AARTHALQNADL 561
G A A EL+ F P + GK V +P V ++ H + NAD
Sbjct: 211 GCA--GAHKELVEFAGKIKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADT 268
Query: 562 VLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQL 618
++LLG + + RA + ++ KIIQ+D+N + + +A+ D++ T++ L
Sbjct: 269 LVLLGTQFPY-----RA-FYPTDAKIIQIDINPASIGAHSKVDMALVGDIKSTLRAL 319
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 4/129 (3%)
Query: 15 IAQALKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTKKPG 73
IA+ L+ G++ ++G+ G + L+ + + G I ++ R+E+ A +AA A L+ +
Sbjct: 9 IAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSGELA 68
Query: 74 VCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARP---YC 130
VC GPG LH G+ + N P+L I G G FQE EL R YC
Sbjct: 69 VCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYC 128
Query: 131 KYSARPPNI 139
+ + P I
Sbjct: 129 ELVSSPEQI 137
>pdb|3EY9|A Chain A, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EY9|B Chain B, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
Length = 572
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 92/357 (25%), Positives = 156/357 (43%), Gaps = 57/357 (15%)
Query: 273 IAQALKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTKKPG 331
IA+ L+ G++ ++G+ G + L+ + + G I ++ R+E+ A +AA A L+ +
Sbjct: 9 IAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSGELA 68
Query: 332 VCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARP---YC 388
VC GPG LH G+ + N P+L I G G FQE EL R YC
Sbjct: 69 VCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYC 128
Query: 389 KYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEPTL 448
+ + P I Q + A+R + + GVS + P ++ AL P P+ T+
Sbjct: 129 ELVSSPEQI---PQVLAIAMRKAVLNR-GVSVVVLPGDV--------ALKPAPE--GATM 174
Query: 449 PWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVIIGK 508
W A P+V P EL++ ++L+ + ++ G
Sbjct: 175 HW-------------YHAPQPVVT-----------PEEEELRKLAQLLRYSSNIALMCGS 210
Query: 509 GAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVS-------AARTHALQNADL 561
G A A EL+ F P + GK V +P V ++ H + NAD
Sbjct: 211 GCA--GAHKELVEFAGKIKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADT 268
Query: 562 VLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQL 618
++LLG + + RA + ++ KIIQ+D+N + + +A+ D++ T++ L
Sbjct: 269 LVLLGTQFPY-----RA-FYPTDAKIIQIDINPASIGAHSKVDMALVGDIKSTLRAL 319
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 4/129 (3%)
Query: 15 IAQALKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTKKPG 73
IA+ L+ G++ ++G+ G + L+ + + G I ++ R+E+ A +AA A L+ +
Sbjct: 9 IAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSGELA 68
Query: 74 VCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARP---YC 130
VC GPG LH G+ + N P+L I G G FQE EL R YC
Sbjct: 69 VCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYC 128
Query: 131 KYSARPPNI 139
+ + P I
Sbjct: 129 ELVSSPEQI 137
>pdb|1V5E|A Chain A, Crystal Structure Of Pyruvate Oxidase Containing Fad, From
Aerococcus Viridans
pdb|2DJI|A Chain A, Crystal Structure Of Pyruvate Oxidase From Aerococcus
Viridans Containing Fad
Length = 590
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 78/378 (20%), Positives = 152/378 (40%), Gaps = 42/378 (11%)
Query: 264 DEELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQ 321
D +++ + + L+ G + ++GI + L AM ++ + ++ +++E+ AA
Sbjct: 1 DNKINIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAV 60
Query: 322 AIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQV 381
GV + GPG H G+ +A ++ P++ I GS Q + FQE Q
Sbjct: 61 MQSKFGGNLGVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQN 120
Query: 382 ELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTP 441
+ Y+ R + + V++A R++ K GV+ L+ P + I+ +
Sbjct: 121 PMYDHIAVYNRRVAYAEQLPKLVDEAARMA-IAKRGVAVLEVPGDFAKVEIDNDQWYSSA 179
Query: 442 KVLEPTLP-WPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAK 500
L P P ++ A +L+ +K P++ G + P + EL + + K
Sbjct: 180 NSLRKYAPIAPAAQDIDAAVELLNNSKRPVIYAG--IGTMGHGPAVQELAR------KIK 231
Query: 501 APLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNAD 560
AP++ GK + + E L+ +++ + + P + AD
Sbjct: 232 APVITTGKNFETFEWDFEALTG-STYRVGWKPA-------------------NETILEAD 271
Query: 561 LVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQ 620
VL G+ + G F++ IQ+D++ L A VAI D L + ++
Sbjct: 272 TVLFAGSNFPFSEVEG---TFRNVDNFIQIDIDPAMLGKRHHADVAILGDAALAIDEILN 328
Query: 621 MLSHTQRNWSFSATSPWW 638
+ + S WW
Sbjct: 329 KVDAVEE-------SAWW 339
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 73/160 (45%), Gaps = 3/160 (1%)
Query: 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQ 63
D +++ + + L+ G + ++GI + L AM ++ + ++ +++E+ AA
Sbjct: 1 DNKINIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAV 60
Query: 64 AIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQV 123
GV + GPG H G+ +A ++ P++ I GS Q + FQE Q
Sbjct: 61 MQSKFGGNLGVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQN 120
Query: 124 ELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLL 163
+ Y+ R + + V++A R++ K G ++L
Sbjct: 121 PMYDHIAVYNRRVAYAEQLPKLVDEAARMA-IAKRGVAVL 159
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 199 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNN 236
P ++V + GD AF + ++ T VRY +PVI V+ +N
Sbjct: 430 PDRQVWNIIGDGAFSMTYPDVVTNVRYNMPVINVVFSN 467
>pdb|1V5F|A Chain A, Crystal Structure Of Pyruvate Oxidase Complexed With Fad
And Tpp, From Aerococcus Viridans
pdb|1V5G|A Chain A, Crystal Structure Of The Reaction Intermediate Between
Pyruvate Oxidase Containing Fad And Tpp, And Substrate
Pyruvate
Length = 589
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/369 (20%), Positives = 148/369 (40%), Gaps = 42/369 (11%)
Query: 273 IAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKP 330
+ + L+ G + ++GI + L AM ++ + ++ +++E+ AA
Sbjct: 9 VMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSKFGGNL 68
Query: 331 GVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKY 390
GV + GPG H G+ +A ++ P++ I GS Q + FQE Q + Y
Sbjct: 69 GVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQNPMYDHIAVY 128
Query: 391 SARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEPTLP- 449
+ R + + V++A R++ K GV+ L+ P + I+ + L P
Sbjct: 129 NRRVAYAEQLPKLVDEAARMA-IAKRGVAVLEVPGDFAKVEIDNDQWYSSANSLRKYAPI 187
Query: 450 WPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVIIGKG 509
P ++ A +L+ +K P++ G + P + EL + + KAP++ GK
Sbjct: 188 APAAQDIDAAVELLNNSKRPVIYAG--IGTMGHGPAVQELAR------KIKAPVITTGKN 239
Query: 510 AAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLLGARL 569
+ + E L+ +++ + + P + AD VL G+
Sbjct: 240 FETFEWDFEALTG-STYRVGWKPA-------------------NETILEADTVLFAGSNF 279
Query: 570 NWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNW 629
+ G F++ IQ+D++ L A VAI D L + ++ + +
Sbjct: 280 PFSEVEG---TFRNVDNFIQIDIDPAMLGKRHHADVAILGDAALAIDEILNKVDAVEE-- 334
Query: 630 SFSATSPWW 638
S WW
Sbjct: 335 -----SAWW 338
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 69/151 (45%), Gaps = 3/151 (1%)
Query: 15 IAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKP 72
+ + L+ G + ++GI + L AM ++ + ++ +++E+ AA
Sbjct: 9 VMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSKFGGNL 68
Query: 73 GVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKY 132
GV + GPG H G+ +A ++ P++ I GS Q + FQE Q + Y
Sbjct: 69 GVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQNPMYDHIAVY 128
Query: 133 SARPPNIHLIGQHVEKAVRLSTFGKPGRSLL 163
+ R + + V++A R++ K G ++L
Sbjct: 129 NRRVAYAEQLPKLVDEAARMA-IAKRGVAVL 158
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 199 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNN 236
P ++V + GD AF + ++ T VRY +PVI V+ +N
Sbjct: 429 PDRQVWNIIGDGAFSMTYPDVVTNVRYNMPVINVVFSN 466
>pdb|2PGN|A Chain A, The Crystal Structure Of Fad And Thdp-Dependent
Cyclohexane-1,2-Dione Hydrolase In Complex With
Cyclohexane-1,2-Dione
pdb|2PGN|B Chain B, The Crystal Structure Of Fad And Thdp-Dependent
Cyclohexane-1,2-Dione Hydrolase In Complex With
Cyclohexane-1,2-Dione
pdb|2PGO|A Chain A, The Crystal Structure Of Fad And Thdp Dependent
Cyclohexane-1,2-Dione Hydrolase (Cdh) From Azoarcus Sp.
Strain 22lin
pdb|2PGO|B Chain B, The Crystal Structure Of Fad And Thdp Dependent
Cyclohexane-1,2-Dione Hydrolase (Cdh) From Azoarcus Sp.
Strain 22lin
Length = 589
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 90/387 (23%), Positives = 146/387 (37%), Gaps = 90/387 (23%)
Query: 271 QVIAQALKFQGIEYVFGIVGI--------------------PVIELAMACQQEGIHYIGM 310
+I +AL+ G E V G +G P EL A G +Y+
Sbjct: 8 DLIVEALEEYGTEQVVGFIGHTSHFVADAFSKSHLGKRVINPATELGGAWMVNGYNYV-- 65
Query: 311 RNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIG----GSCA 366
++ AA A +G L LLH M A+ P + IG G A
Sbjct: 66 KDRSAAVGAWHCVGNL--------------LLHA--AMQEARTGRIPAVHIGLNSDGRLA 109
Query: 367 QDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426
E Q+ P P + + R + +G+ + +A R++ G +Y+D P +
Sbjct: 110 GRSEAA---QQVPWQSFT-PIARSTQRVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFD 165
Query: 427 LLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGI 486
L A +I+ ALVP ++ L ++ + EA A LV
Sbjct: 166 LTADQIDDKALVPRGATRAKSV-------LHAPNEDVREAAAQLV--------------- 203
Query: 487 AELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPN 546
AK P+++ G G A S LL +P + T G GV P+ H
Sbjct: 204 -----------AAKNPVILAGGGVARSGGSEALLKLAEMVGVPVVTTSTGAGVFPETHAL 252
Query: 547 CVSAA-------RTHALQNADLVLLLGARL-NWILHFGRAPRFKSNVKIIQVDLNAEELH 598
+ +A + AD VL+LG+RL +W + G + K + VD + L
Sbjct: 253 AMGSAGFCGWKSANDMMAAADFVLVLGSRLSDWGIAQGYITKMP---KFVHVDTDPAVLG 309
Query: 599 NSVQAAVAIQSDVRLTVQQLKQMLSHT 625
+++ +D + ++QL ++L T
Sbjct: 310 TFYFPLLSVVADAKTFMEQLIEVLPGT 336
>pdb|1UPB|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPB|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPB|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPB|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|E Chain E, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|F Chain F, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|2IHV|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHV|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHV|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHV|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHU|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
pdb|2IHU|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
pdb|2IHU|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
pdb|2IHU|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
Length = 573
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 96/243 (39%), Gaps = 29/243 (11%)
Query: 303 EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIG 362
EGI ++ R+E A AA + +T +P C GPG+ + G+A + ++ P++ +
Sbjct: 47 EGIDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGMTNLSTGIATSVLDRSPVIALA 106
Query: 363 GSCAQDHEGIGGFQEC-PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYL 421
+C V + P KY+ H I V+ AV + G S++
Sbjct: 107 AQSESHDIFPNDTHQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFI 166
Query: 422 DFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTL 481
P +LL VP P P P +G V +
Sbjct: 167 SLPVDLLGSSEGIDTTVPNPPANTPAKP-----------------------VGVVADG-- 201
Query: 482 PWPGIAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVP 541
W QA+ L+ EAK P++++G A S A + + N+P + T + KGV+P
Sbjct: 202 -W--QKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVLP 258
Query: 542 DAH 544
H
Sbjct: 259 VGH 261
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Query: 45 EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIG 104
EGI ++ R+E A AA + +T +P C GPG+ + G+A + ++ P++ +
Sbjct: 47 EGIDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGMTNLSTGIATSVLDRSPVIALA 106
Query: 105 GSCAQDHEGIGGFQEC-PQVELARPYCKYSARPPNIHLIGQHVEKAV 150
+C V + P KY+ H I V+ AV
Sbjct: 107 AQSESHDIFPNDTHQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAV 153
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 19/87 (21%)
Query: 199 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSN 258
P + + GD F + +LET+ R LP++ V+VNN+ T +++ +
Sbjct: 453 PDQPTFLIAGDGGFHSNSSDLETIARLNLPIVTVVVNND---------TNGLIELYQNIG 503
Query: 259 MSEDYDEELSANQVIAQALKFQGIEYV 285
+D A+KF G+++V
Sbjct: 504 HHRSHD----------PAVKFGGVDFV 520
>pdb|1UPA|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|1UPA|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|1UPA|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|1UPA|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|2IHT|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
pdb|2IHT|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
pdb|2IHT|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
pdb|2IHT|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
Length = 573
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 95/243 (39%), Gaps = 29/243 (11%)
Query: 303 EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIG 362
EGI ++ R+E A AA + +T +P C GPG + G+A + ++ P++ +
Sbjct: 47 EGIDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGXTNLSTGIATSVLDRSPVIALA 106
Query: 363 GSCAQDHEGIGGFQEC-PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYL 421
+C V + P KY+ H I V+ AV + G S++
Sbjct: 107 AQSESHDIFPNDTHQCLDSVAIVAPXSKYAVELQRPHEITDLVDSAVNAAXTEPVGPSFI 166
Query: 422 DFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTL 481
P +LL VP P P P +G V +
Sbjct: 167 SLPVDLLGSSEGIDTTVPNPPANTPAKP-----------------------VGVVADG-- 201
Query: 482 PWPGIAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVP 541
W QA+ L+ EAK P++++G A S A + + N+P + T + KGV+P
Sbjct: 202 -W--QKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVLP 258
Query: 542 DAH 544
H
Sbjct: 259 VGH 261
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 1/107 (0%)
Query: 45 EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIG 104
EGI ++ R+E A AA + +T +P C GPG + G+A + ++ P++ +
Sbjct: 47 EGIDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGXTNLSTGIATSVLDRSPVIALA 106
Query: 105 GSCAQDHEGIGGFQEC-PQVELARPYCKYSARPPNIHLIGQHVEKAV 150
+C V + P KY+ H I V+ AV
Sbjct: 107 AQSESHDIFPNDTHQCLDSVAIVAPXSKYAVELQRPHEITDLVDSAV 153
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 19/87 (21%)
Query: 199 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSN 258
P + + GD F + +LET+ R LP++ V+VNN+ T +++ +
Sbjct: 453 PDQPTFLIAGDGGFHSNSSDLETIARLNLPIVTVVVNND---------TNGLIELYQNIG 503
Query: 259 MSEDYDEELSANQVIAQALKFQGIEYV 285
+D A+KF G+++V
Sbjct: 504 HHRSHD----------PAVKFGGVDFV 520
>pdb|2VJY|A Chain A, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|B Chain B, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|C Chain C, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|D Chain D, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VK4|A Chain A, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|B Chain B, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|C Chain C, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|D Chain D, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
Length = 563
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 128/324 (39%), Gaps = 55/324 (16%)
Query: 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIG 324
E++ + + + LK ++ +FG+ G + L + G+ + G NE A YAA G
Sbjct: 3 EITLGRYLFERLKQVEVQTIFGLPGDFNLSLLDNIYEVPGMRWAGNANELNAAYAAD--G 60
Query: 325 YLTKKPGVCLVVS-GPGLLHTFGGMANA--------QINCWPMLVIGGSCAQDHEGIGGF 375
Y K C++ + G G L G+A + + P + H +G
Sbjct: 61 YARLKGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSVSSQAKQLLLHHTLGNG 120
Query: 376 QECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQS 435
++ + +A +I+ +++ +R + + V YL PANL+ + S
Sbjct: 121 DFTVFHRMSSNISETTAMITDINTAPAEIDRCIRTTYVSQRPV-YLGLPANLVDLTVPAS 179
Query: 436 AL-VPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASR 494
L P L+P P +A +I VL+
Sbjct: 180 LLDTPIDLSLKPNDP-----------------EAEEEVIENVLQ---------------- 206
Query: 495 LILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPN-------- 546
LI EAK P+++ + A+ E ++ P TPMGKG + + HP
Sbjct: 207 LIKEAKNPVILADACCSRHDAKAETKKLIDLTQFPAFVTPMGKGSIDEKHPRFGGVYVGT 266
Query: 547 CVSAARTHALQNADLVLLLGARLN 570
S A A+++ADLVL +GA L+
Sbjct: 267 LSSPAVKEAVESADLVLSVGALLS 290
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 199 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNG 238
P KRV+ GD + + E+ T++R+ L L ++NN+G
Sbjct: 434 PKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDG 473
>pdb|1PYD|A Chain A, Catalytic Centers In The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase At 2.4 Angstroms
Resolution
pdb|1PYD|B Chain B, Catalytic Centers In The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase At 2.4 Angstroms
Resolution
Length = 556
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/324 (20%), Positives = 123/324 (37%), Gaps = 55/324 (16%)
Query: 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIG 324
E++ + + + LK + VFG+ G + L + EG+ + G NE A YAA G
Sbjct: 3 EITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAAD--G 60
Query: 325 YLTKKPGVCLVVS-GPGLLHTFGGMANA--------QINCWPMLVIGGSCAQDHEGIGGF 375
Y K C++ + G G L G+A + + P + H +G
Sbjct: 61 YARIKGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNG 120
Query: 376 QECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQS 435
++ + +A +I +++ +R +T+ YL PANL+ +
Sbjct: 121 DFTVFHRMSANISETTAMITDIATAPAEIDRCIR-TTYVTQRPVYLGLPANLVDLNVPAK 179
Query: 436 AL-VPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASR 494
L P L+P +A++ +I +L
Sbjct: 180 LLQTPIDMSLKPN-----------------DAESEKEVIDTILA---------------- 206
Query: 495 LILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPN-------- 546
L+ +AK P+++ + + E ++ P TPMGKG + + HP
Sbjct: 207 LVKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPMGKGSISEQHPRYGGVYVGT 266
Query: 547 CVSAARTHALQNADLVLLLGARLN 570
A+++ADL+L +GA L+
Sbjct: 267 LSKPEVKEAVESADLILSVGALLS 290
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 199 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNG 238
P KRV+ GD + + E+ T++R+ L L ++NN+G
Sbjct: 434 PKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDG 473
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIG 66
E++ + + + LK + VFG+ G + L + EG+ + G NE A YAA G
Sbjct: 3 EITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAAD--G 60
Query: 67 YLTKKPGVCLVVS-GPGLLHTFGGMANA 93
Y K C++ + G G L G+A +
Sbjct: 61 YARIKGMSCIITTFGVGELSALNGIAGS 88
>pdb|1PO7|A Chain A, High Resolution Structure Of E28a Mutant Benzoylformate
Decarboxylase From Pseudomonas Putida
pdb|1Q6Z|A Chain A, High Resolution Structure Of E28a Mutant Benzoylformate
Decarboxylase From Pseudomonas Putida Complexed With
Thiamin Thiazolone Diphosphate
Length = 528
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 6/151 (3%)
Query: 277 LKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL--TKKPGVCL 334
L+ QGI+ VFG G + ++ + + + Q AC A GY ++KP
Sbjct: 12 LRRQGIDTVFGNPGSNALPFLKDFPEDFRYILAL---QEACVVGIADGYAQASRKPAFIN 68
Query: 335 VVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGF-QECPQVELARPYCKYSAR 393
+ S G + G ++NA + P++V G + G+ L RP K+S
Sbjct: 69 LHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYE 128
Query: 394 PPNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424
P + + + +A+ +++ G YL P
Sbjct: 129 PASAAEVPHAMSRAIHMASMAPQGPVYLSVP 159
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 6/144 (4%)
Query: 19 LKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL--TKKPGVCL 76
L+ QGI+ VFG G + ++ + + + Q AC A GY ++KP
Sbjct: 12 LRRQGIDTVFGNPGSNALPFLKDFPEDFRYILAL---QEACVVGIADGYAQASRKPAFIN 68
Query: 77 VVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGG-FQECPQVELARPYCKYSAR 135
+ S G + G ++NA + P++V G + G+ L RP K+S
Sbjct: 69 LHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYE 128
Query: 136 PPNIHLIGQHVEKAVRLSTFGKPG 159
P + + + +A+ +++ G
Sbjct: 129 PASAAEVPHAMSRAIHMASMAPQG 152
Score = 36.6 bits (83), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 199 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGF 243
P ++V+ V GD + +S L T +Y +P I VI+ NNG YG
Sbjct: 418 PERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIM-NNGTYGAL 461
>pdb|2VBF|A Chain A, The Holostructure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis
pdb|2VBF|B Chain B, The Holostructure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis
pdb|2VBG|A Chain A, The Complex Structure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis With 2r-1-
Hydroxyethyl-Deazathdp
pdb|2VBG|B Chain B, The Complex Structure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis With 2r-1-
Hydroxyethyl-Deazathdp
Length = 570
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 113/305 (37%), Gaps = 53/305 (17%)
Query: 281 GIEYVFGIVGIPVIE-LAMACQQEGIHYIGMRNEQAACYAAQAIGYL-TKKPGVCLVVSG 338
GIE +FG+ G ++ L +E + +IG NE A Y A GY TKK L G
Sbjct: 39 GIEEIFGVPGDYNLQFLDQIISREDMKWIGNANELNASYMAD--GYARTKKAAAFLTTFG 96
Query: 339 PGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIH 398
G L G+A + P++ I GS + G F LA K H
Sbjct: 97 VGELSAINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHT---LADGDFK--------H 145
Query: 399 LIGQH--VEKAVRLSTFGKPGVSYLDFPANLLAQR----INQSALVPTPKVLEPTLPWPG 452
+ H V A L T + LL +R IN V K +P L
Sbjct: 146 FMKMHEPVTAARTLLTAENATYEIDRVLSQLLKERKPVYINLPVDVAAAKAEKPALSLEK 205
Query: 453 IAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVIIGKGAAY 512
+ ++ VI+ K+ E LK A + P+VI G
Sbjct: 206 ESSTTNTTE--------QVILSKIEES---------LKNAQK-------PVVIAGHEVIS 241
Query: 513 SQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV--------SAARTHALQNADLVLL 564
E + FV+ LP GK V ++ P+ + + + +++AD +L+
Sbjct: 242 FGLEKTVTQFVSETKLPITTLNFGKSAVDESLPSFLGIYNGKLSEISLKNFVESADFILM 301
Query: 565 LGARL 569
LG +L
Sbjct: 302 LGVKL 306
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 23 GIEYVFGIVGIPVIE-LAMACQQEGIHYIGMRNEQAACYAAQAIGYL-TKKPGVCLVVSG 80
GIE +FG+ G ++ L +E + +IG NE A Y A GY TKK L G
Sbjct: 39 GIEEIFGVPGDYNLQFLDQIISREDMKWIGNANELNASYMAD--GYARTKKAAAFLTTFG 96
Query: 81 PGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGF 117
G L G+A + P++ I GS + G F
Sbjct: 97 VGELSAINGLAGSYAENLPVVEIVGSPTSKVQNDGKF 133
>pdb|1PVD|A Chain A, Crystal Structure Of The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase From The Yeast
Saccharomyces Cerevisiae At 2.3 Angstroms Resolution
pdb|1PVD|B Chain B, Crystal Structure Of The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase From The Yeast
Saccharomyces Cerevisiae At 2.3 Angstroms Resolution
Length = 555
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/324 (20%), Positives = 123/324 (37%), Gaps = 55/324 (16%)
Query: 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIG 324
E++ + + + LK + VFG+ G + L + EG+ + G NE A YAA G
Sbjct: 2 EITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAAD--G 59
Query: 325 YLTKKPGVCLVVS-GPGLLHTFGGMANA--------QINCWPMLVIGGSCAQDHEGIGGF 375
Y K C++ + G G L G+A + + P + H +G
Sbjct: 60 YARIKGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNG 119
Query: 376 QECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQS 435
++ + +A +I +++ +R +T+ YL PANL+ +
Sbjct: 120 DFTVFHRMSANISETTAMITDIATAPAEIDRCIR-TTYVTQRPVYLGLPANLVDLNVPAK 178
Query: 436 AL-VPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASR 494
L P L+P +A++ +I +L
Sbjct: 179 LLQTPIDMSLKPN-----------------DAESEKEVIDTILA---------------- 205
Query: 495 LILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPN-------- 546
L+ +AK P+++ + + E ++ P TPMGKG + + HP
Sbjct: 206 LVKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPMGKGSISEQHPRYGGVYVGT 265
Query: 547 CVSAARTHALQNADLVLLLGARLN 570
A+++ADL+L +GA L+
Sbjct: 266 LSKPEVKEAVESADLILSVGALLS 289
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 199 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNG 238
P KRV+ GD + + E+ T++R+ L L ++NN+G
Sbjct: 433 PKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDG 472
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIG 66
E++ + + + LK + VFG+ G + L + EG+ + G NE A YAA G
Sbjct: 2 EITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAAD--G 59
Query: 67 YLTKKPGVCLVVS-GPGLLHTFGGMANA 93
Y K C++ + G G L G+A +
Sbjct: 60 YARIKGMSCIITTFGVGELSALNGIAGS 87
>pdb|1QPB|A Chain A, Pyruvate Decarboyxlase From Yeast (Form B) Complexed With
Pyruvamide
pdb|1QPB|B Chain B, Pyruvate Decarboyxlase From Yeast (Form B) Complexed With
Pyruvamide
Length = 563
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/324 (21%), Positives = 123/324 (37%), Gaps = 55/324 (16%)
Query: 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIG 324
E++ + + + LK + VFG+ G + L + EG+ + G NE A YAA G
Sbjct: 3 EITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAAD--G 60
Query: 325 YLTKKPGVCLVVS-GPGLLHTFGGMANA--------QINCWPMLVIGGSCAQDHEGIGGF 375
Y K C++ + G G L G+A + + P + H +G
Sbjct: 61 YARIKGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNG 120
Query: 376 QECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQS 435
++ + +A +I +++ +R +T+ YL PANL+ +
Sbjct: 121 DFTVFHRMSANISETTAMITDIATAPAEIDRCIR-TTYVTQRPVYLGLPANLVDLNVPAK 179
Query: 436 AL-VPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASR 494
L P L+P +A++ +I +L
Sbjct: 180 LLQTPIDMSLKPN-----------------DAESEKEVIDTIL----------------V 206
Query: 495 LILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPN-------- 546
LI +AK P+++ + + E ++ P TPMGKG + + HP
Sbjct: 207 LIKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPMGKGSIDEQHPRYGGVYVGT 266
Query: 547 CVSAARTHALQNADLVLLLGARLN 570
A+++ADL+L +GA L+
Sbjct: 267 LSKPEVKEAVESADLILSVGALLS 290
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 199 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNG 238
P KRV+ GD + + E+ T++R+ L L ++NN+G
Sbjct: 434 PKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDG 473
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIG 66
E++ + + + LK + VFG+ G + L + EG+ + G NE A YAA G
Sbjct: 3 EITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAAD--G 60
Query: 67 YLTKKPGVCLVVS-GPGLLHTFGGMANA 93
Y K C++ + G G L G+A +
Sbjct: 61 YARIKGMSCIITTFGVGELSALNGIAGS 88
>pdb|2W93|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
Length = 563
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/324 (20%), Positives = 123/324 (37%), Gaps = 55/324 (16%)
Query: 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIG 324
E++ + + + LK + VFG+ G + L + EG+ + G NE A YAA G
Sbjct: 3 EITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAAD--G 60
Query: 325 YLTKKPGVCLVVS-GPGLLHTFGGMANA--------QINCWPMLVIGGSCAQDHEGIGGF 375
Y K C++ + G G L G+A + + P + H +G
Sbjct: 61 YARIKGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNG 120
Query: 376 QECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQS 435
++ + +A +I +++ +R +T+ YL PANL+ +
Sbjct: 121 DFTVFHRMSANISETTAMITDIATAPAEIDRCIR-TTYVTQRPVYLGLPANLVDLNVPAK 179
Query: 436 AL-VPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASR 494
L P L+P +A++ +I +L
Sbjct: 180 LLQTPIDMSLKPN-----------------DAESEKEVIDTILA---------------- 206
Query: 495 LILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPN-------- 546
L+ +AK P+++ + + E ++ P TPMGKG + + HP
Sbjct: 207 LVKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPMGKGSIDEQHPRYGGVYVGT 266
Query: 547 CVSAARTHALQNADLVLLLGARLN 570
A+++ADL+L +GA L+
Sbjct: 267 LSKPEVKEAVESADLILSVGALLS 290
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 199 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNG 238
P KRV+ GD + + E+ T++R+ L L ++NN+G
Sbjct: 434 PKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDG 473
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIG 66
E++ + + + LK + VFG+ G + L + EG+ + G NE A YAA G
Sbjct: 3 EITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAAD--G 60
Query: 67 YLTKKPGVCLVVS-GPGLLHTFGGMANA 93
Y K C++ + G G L G+A +
Sbjct: 61 YARIKGMSCIITTFGVGELSALNGIAGS 88
>pdb|2FWN|A Chain A, Phosphorylation Of An Active Site Serine In A Thdp-
Dependent Enzyme By Phosphonate Inactivation
Length = 528
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 6/151 (3%)
Query: 277 LKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL--TKKPGVCL 334
L+ QGI+ VFG G + ++ + + + Q AC A GY ++KP
Sbjct: 12 LRRQGIDTVFGNPGXNELPFLKDFPEDFRYILAL---QEACVVGIADGYAQASRKPAFIN 68
Query: 335 VVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGF-QECPQVELARPYCKYSAR 393
+ S G + G ++NA + P++V G + G+ L RP K+S
Sbjct: 69 LHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYE 128
Query: 394 PPNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424
P + + + +A+ +++ G YL P
Sbjct: 129 PASAAEVPHAMSRAIHMASMAPQGPVYLSVP 159
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 6/144 (4%)
Query: 19 LKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL--TKKPGVCL 76
L+ QGI+ VFG G + ++ + + + Q AC A GY ++KP
Sbjct: 12 LRRQGIDTVFGNPGXNELPFLKDFPEDFRYILAL---QEACVVGIADGYAQASRKPAFIN 68
Query: 77 VVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGG-FQECPQVELARPYCKYSAR 135
+ S G + G ++NA + P++V G + G+ L RP K+S
Sbjct: 69 LHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYE 128
Query: 136 PPNIHLIGQHVEKAVRLSTFGKPG 159
P + + + +A+ +++ G
Sbjct: 129 PASAAEVPHAMSRAIHMASMAPQG 152
Score = 36.6 bits (83), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 199 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGF 243
P ++V+ V GD + +S L T +Y +P I VI+ NNG YG
Sbjct: 418 PERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIM-NNGTYGAL 461
>pdb|2FN3|A Chain A, High Resolution Structure Of S26a Mutant Of Benzoylformate
Decarboxylase From Pseudomonas Putida Complexed With
Thiamine Thiazolone Diphosphate
Length = 528
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 6/151 (3%)
Query: 277 LKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL--TKKPGVCL 334
L+ QGI+ VFG G + ++ + + + Q AC A GY ++KP
Sbjct: 12 LRRQGIDTVFGNPGANELPFLKDFPEDFRYILAL---QEACVVGIADGYAQASRKPAFIN 68
Query: 335 VVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGF-QECPQVELARPYCKYSAR 393
+ S G + G ++NA + P++V G + G+ L RP K+S
Sbjct: 69 LHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYE 128
Query: 394 PPNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424
P + + + +A+ +++ G YL P
Sbjct: 129 PASAAEVPHAMSRAIHMASMAPQGPVYLSVP 159
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 6/144 (4%)
Query: 19 LKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL--TKKPGVCL 76
L+ QGI+ VFG G + ++ + + + Q AC A GY ++KP
Sbjct: 12 LRRQGIDTVFGNPGANELPFLKDFPEDFRYILAL---QEACVVGIADGYAQASRKPAFIN 68
Query: 77 VVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGG-FQECPQVELARPYCKYSAR 135
+ S G + G ++NA + P++V G + G+ L RP K+S
Sbjct: 69 LHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYE 128
Query: 136 PPNIHLIGQHVEKAVRLSTFGKPG 159
P + + + +A+ +++ G
Sbjct: 129 PASAAEVPHAMSRAIHMASMAPQG 152
Score = 36.6 bits (83), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 199 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGF 243
P ++V+ V GD + +S L T +Y +P I VI+ NNG YG
Sbjct: 418 PERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIM-NNGTYGAL 461
>pdb|1PI3|A Chain A, E28q Mutant Benzoylformate Decarboxylase From Pseudomonas
Putida
Length = 528
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 6/151 (3%)
Query: 277 LKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL--TKKPGVCL 334
L+ QGI+ VFG G + ++ + + + Q AC A GY ++KP
Sbjct: 12 LRRQGIDTVFGNPGSNQLPFLKDFPEDFRYILAL---QEACVVGIADGYAQASRKPAFIN 68
Query: 335 VVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGF-QECPQVELARPYCKYSAR 393
+ S G + G ++NA + P++V G + G+ L RP K+S
Sbjct: 69 LHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYE 128
Query: 394 PPNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424
P + + + +A+ +++ G YL P
Sbjct: 129 PASAAEVPHAMSRAIHMASMAPQGPVYLSVP 159
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 6/144 (4%)
Query: 19 LKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL--TKKPGVCL 76
L+ QGI+ VFG G + ++ + + + Q AC A GY ++KP
Sbjct: 12 LRRQGIDTVFGNPGSNQLPFLKDFPEDFRYILAL---QEACVVGIADGYAQASRKPAFIN 68
Query: 77 VVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGG-FQECPQVELARPYCKYSAR 135
+ S G + G ++NA + P++V G + G+ L RP K+S
Sbjct: 69 LHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYE 128
Query: 136 PPNIHLIGQHVEKAVRLSTFGKPG 159
P + + + +A+ +++ G
Sbjct: 129 PASAAEVPHAMSRAIHMASMAPQG 152
Score = 36.6 bits (83), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 199 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGF 243
P ++V+ V GD + +S L T +Y +P I VI+ NNG YG
Sbjct: 418 PERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIM-NNGTYGAL 461
>pdb|1YNO|A Chain A, High Resolution Structure Of Benzoylformate Decarboxylase
From Pseudomonas Putida Complexed With Thiamine
Thiazolone Diphosphate
Length = 527
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 6/151 (3%)
Query: 277 LKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL--TKKPGVCL 334
L+ QGI+ VFG G + ++ + + + Q AC A GY ++KP
Sbjct: 11 LRRQGIDTVFGNPGSNELPFLKDFPEDFRYILAL---QEACVVGIADGYAQASRKPAFIN 67
Query: 335 VVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGF-QECPQVELARPYCKYSAR 393
+ S G + G ++NA + P++V G + G+ L RP K+S
Sbjct: 68 LHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYE 127
Query: 394 PPNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424
P + + + +A+ +++ G YL P
Sbjct: 128 PASAAEVPHAMSRAIHMASMAPQGPVYLSVP 158
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 6/144 (4%)
Query: 19 LKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL--TKKPGVCL 76
L+ QGI+ VFG G + ++ + + + Q AC A GY ++KP
Sbjct: 11 LRRQGIDTVFGNPGSNELPFLKDFPEDFRYILAL---QEACVVGIADGYAQASRKPAFIN 67
Query: 77 VVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGG-FQECPQVELARPYCKYSAR 135
+ S G + G ++NA + P++V G + G+ L RP K+S
Sbjct: 68 LHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYE 127
Query: 136 PPNIHLIGQHVEKAVRLSTFGKPG 159
P + + + +A+ +++ G
Sbjct: 128 PASAAEVPHAMSRAIHMASMAPQG 151
Score = 36.6 bits (83), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 199 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGF 243
P ++V+ V GD + +S L T +Y +P I VI+ NNG YG
Sbjct: 417 PERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIM-NNGTYGAL 460
>pdb|3FZN|A Chain A, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|B Chain B, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|C Chain C, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|D Chain D, Intermediate Analogue In Benzoylformate Decarboxylase
Length = 534
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 6/151 (3%)
Query: 277 LKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL--TKKPGVCL 334
L+ QGI+ VFG G + ++ + + + Q AC A GY ++KP
Sbjct: 12 LRRQGIDTVFGNPGSNELPFLKDFPEDFRYILAL---QEACVVGIADGYAQASRKPAFIN 68
Query: 335 VVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGF-QECPQVELARPYCKYSAR 393
+ S G + G ++NA + P++V G + G+ L RP K+S
Sbjct: 69 LHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYE 128
Query: 394 PPNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424
P + + + +A+ +++ G YL P
Sbjct: 129 PASAAEVPHAMSRAIHMASMAPQGPVYLSVP 159
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 6/144 (4%)
Query: 19 LKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL--TKKPGVCL 76
L+ QGI+ VFG G + ++ + + + Q AC A GY ++KP
Sbjct: 12 LRRQGIDTVFGNPGSNELPFLKDFPEDFRYILAL---QEACVVGIADGYAQASRKPAFIN 68
Query: 77 VVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGG-FQECPQVELARPYCKYSAR 135
+ S G + G ++NA + P++V G + G+ L RP K+S
Sbjct: 69 LHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYE 128
Query: 136 PPNIHLIGQHVEKAVRLSTFGKPG 159
P + + + +A+ +++ G
Sbjct: 129 PASAAEVPHAMSRAIHMASMAPQG 152
Score = 36.6 bits (83), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 199 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGF 243
P ++V+ V GD + +S L T +Y +P I VI+ NNG YG
Sbjct: 418 PERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIM-NNGTYGAL 461
>pdb|1MCZ|A Chain A, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|B Chain B, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|C Chain C, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|D Chain D, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|E Chain E, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|F Chain F, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|G Chain G, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|H Chain H, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|I Chain I, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|J Chain J, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|K Chain K, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|L Chain L, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|M Chain M, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|N Chain N, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|O Chain O, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|P Chain P, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1BFD|A Chain A, Benzoylformate Decarboxylase From Pseudomonas Putida
pdb|3FSJ|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Inhibitor Mbp
Length = 528
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 6/151 (3%)
Query: 277 LKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL--TKKPGVCL 334
L+ QGI+ VFG G + ++ + + + Q AC A GY ++KP
Sbjct: 12 LRRQGIDTVFGNPGSNELPFLKDFPEDFRYILAL---QEACVVGIADGYAQASRKPAFIN 68
Query: 335 VVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGF-QECPQVELARPYCKYSAR 393
+ S G + G ++NA + P++V G + G+ L RP K+S
Sbjct: 69 LHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYE 128
Query: 394 PPNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424
P + + + +A+ +++ G YL P
Sbjct: 129 PASAAEVPHAMSRAIHMASMAPQGPVYLSVP 159
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 6/144 (4%)
Query: 19 LKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL--TKKPGVCL 76
L+ QGI+ VFG G + ++ + + + Q AC A GY ++KP
Sbjct: 12 LRRQGIDTVFGNPGSNELPFLKDFPEDFRYILAL---QEACVVGIADGYAQASRKPAFIN 68
Query: 77 VVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGG-FQECPQVELARPYCKYSAR 135
+ S G + G ++NA + P++V G + G+ L RP K+S
Sbjct: 69 LHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYE 128
Query: 136 PPNIHLIGQHVEKAVRLSTFGKPG 159
P + + + +A+ +++ G
Sbjct: 129 PASAAEVPHAMSRAIHMASMAPQG 152
Score = 36.6 bits (83), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 199 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGF 243
P ++V+ V GD + +S L T +Y +P I VI+ NNG YG
Sbjct: 418 PERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIM-NNGTYGAL 461
>pdb|2V3W|A Chain A, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|B Chain B, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|C Chain C, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|D Chain D, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
Length = 528
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 6/151 (3%)
Query: 277 LKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL--TKKPGVCL 334
L+ QGI+ VFG G + ++ + + + Q AC A GY ++KP
Sbjct: 12 LRRQGIDTVFGNPGSNELPFLKDFPEDFRYILAL---QEACVVGIADGYAQASRKPAFIN 68
Query: 335 VVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGF-QECPQVELARPYCKYSAR 393
+ S G + G ++NA + P++V G + G+ L RP K+S
Sbjct: 69 LHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYE 128
Query: 394 PPNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424
P + + + +A+ +++ G YL P
Sbjct: 129 PASAAEVPHAMSRAIHMASMAPQGPVYLSVP 159
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 6/144 (4%)
Query: 19 LKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL--TKKPGVCL 76
L+ QGI+ VFG G + ++ + + + Q AC A GY ++KP
Sbjct: 12 LRRQGIDTVFGNPGSNELPFLKDFPEDFRYILAL---QEACVVGIADGYAQASRKPAFIN 68
Query: 77 VVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGG-FQECPQVELARPYCKYSAR 135
+ S G + G ++NA + P++V G + G+ L RP K+S
Sbjct: 69 LHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYE 128
Query: 136 PPNIHLIGQHVEKAVRLSTFGKPG 159
P + + + +A+ +++ G
Sbjct: 129 PASAAEVPHAMSRAIHMASMAPQG 152
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 199 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGG 242
P ++V+ V GD + +S L T +Y +P I VI+ NNG YG
Sbjct: 418 PERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIM-NNGTYGA 460
>pdb|3F6B|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Pyridyl Inhibitor Paa
pdb|3F6E|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Pyridyl Inhibitor 3-Pkb
Length = 525
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 6/151 (3%)
Query: 277 LKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL--TKKPGVCL 334
L+ QGI+ VFG G + ++ + + + Q AC A GY ++KP
Sbjct: 11 LRRQGIDTVFGNPGSNELPFLKDFPEDFRYILAL---QEACVVGIADGYAQASRKPAFIN 67
Query: 335 VVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGF-QECPQVELARPYCKYSAR 393
+ S G + G ++NA + P++V G + G+ L RP K+S
Sbjct: 68 LHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYE 127
Query: 394 PPNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424
P + + + +A+ +++ G YL P
Sbjct: 128 PASAAEVPHAMSRAIHMASMAPQGPVYLSVP 158
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 6/144 (4%)
Query: 19 LKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL--TKKPGVCL 76
L+ QGI+ VFG G + ++ + + + Q AC A GY ++KP
Sbjct: 11 LRRQGIDTVFGNPGSNELPFLKDFPEDFRYILAL---QEACVVGIADGYAQASRKPAFIN 67
Query: 77 VVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGG-FQECPQVELARPYCKYSAR 135
+ S G + G ++NA + P++V G + G+ L RP K+S
Sbjct: 68 LHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYE 127
Query: 136 PPNIHLIGQHVEKAVRLSTFGKPG 159
P + + + +A+ +++ G
Sbjct: 128 PASAAEVPHAMSRAIHMASMAPQG 151
Score = 36.6 bits (83), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 199 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGF 243
P ++V+ V GD + +S L T +Y +P I VI+ NNG YG
Sbjct: 417 PERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIM-NNGTYGAL 460
>pdb|2VK1|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
Length = 563
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 68/324 (20%), Positives = 122/324 (37%), Gaps = 55/324 (16%)
Query: 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIG 324
E++ + + + LK + VFG+ G + L + EG+ + G NE A YAA G
Sbjct: 3 EITLGKYLFERLKQVNVNTVFGLPGAFNLSLLDKIYEVEGMRWAGNANELNAAYAAD--G 60
Query: 325 YLTKKPGVCLVVS-GPGLLHTFGGMANA--------QINCWPMLVIGGSCAQDHEGIGGF 375
Y K C++ + G G L G+A + + P + H +G
Sbjct: 61 YARIKGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNG 120
Query: 376 QECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQS 435
++ + +A +I +++ +R +T+ YL PANL+ +
Sbjct: 121 DFTVFHRMSANISETTAMITDIATAPAEIDRCIR-TTYVTQRPVYLGLPANLVDLNVPAK 179
Query: 436 AL-VPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASR 494
L P L+P +A++ +I +L
Sbjct: 180 LLQTPIDMSLKPN-----------------DAESEKEVIDTIL----------------V 206
Query: 495 LILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPN-------- 546
L +AK P+++ + + E ++ P TPMGKG + + HP
Sbjct: 207 LDKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPMGKGSIDEQHPRYGGVYVGT 266
Query: 547 CVSAARTHALQNADLVLLLGARLN 570
A+++ADL+L +GA L+
Sbjct: 267 LSKPEVKEAVESADLILSVGALLS 290
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 199 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNG 238
P KRV+ GD + + E+ T++R+ L L ++NN+G
Sbjct: 434 PKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDG 473
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIG 66
E++ + + + LK + VFG+ G + L + EG+ + G NE A YAA G
Sbjct: 3 EITLGKYLFERLKQVNVNTVFGLPGAFNLSLLDKIYEVEGMRWAGNANELNAAYAAD--G 60
Query: 67 YLTKKPGVCLVVS-GPGLLHTFGGMANA 93
Y K C++ + G G L G+A +
Sbjct: 61 YARIKGMSCIITTFGVGELSALNGIAGS 88
>pdb|2VK8|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
Length = 563
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 68/324 (20%), Positives = 122/324 (37%), Gaps = 55/324 (16%)
Query: 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIG 324
E++ + + + LK + VFG+ G + L + EG+ + G NE A YAA G
Sbjct: 3 EITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAAD--G 60
Query: 325 YLTKKPGVCLVVS-GPGLLHTFGGMANA--------QINCWPMLVIGGSCAQDHEGIGGF 375
Y K C++ + G G L G+A + + P + H +G
Sbjct: 61 YARIKGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNG 120
Query: 376 QECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQS 435
++ + +A +I +++ +R +T+ YL PANL+ +
Sbjct: 121 DFTVFHRMSANISETTAMITDIATAPAEIDRCIR-TTYVTQRPVYLGLPANLVDLNVPAK 179
Query: 436 AL-VPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASR 494
L P L+P +A++ +I +L
Sbjct: 180 LLQTPIDMSLKPN-----------------DAESEKEVIDTIL----------------V 206
Query: 495 LILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPN-------- 546
L +AK P+++ + + E ++ P TPMGKG + + HP
Sbjct: 207 LDKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPMGKGSIDEQHPRYGGVYVGT 266
Query: 547 CVSAARTHALQNADLVLLLGARLN 570
A+++ADL+L +GA L+
Sbjct: 267 LSKPEVKEAVESADLILSVGALLS 290
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 199 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNG 238
P KRV+ GD + + E+ T++R+ L L ++NN+G
Sbjct: 434 PKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDG 473
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIG 66
E++ + + + LK + VFG+ G + L + EG+ + G NE A YAA G
Sbjct: 3 EITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAAD--G 60
Query: 67 YLTKKPGVCLVVS-GPGLLHTFGGMANA 93
Y K C++ + G G L G+A +
Sbjct: 61 YARIKGMSCIITTFGVGELSALNGIAGS 88
>pdb|1ZPD|A Chain A, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|B Chain B, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|E Chain E, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|F Chain F, Pyruvate Decarboxylase From Zymomonas Mobilis
Length = 568
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 198 APGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNG 238
AP +R + + GD +F + E+ +VR +LPVI+ ++NN G
Sbjct: 429 APERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYG 469
>pdb|2WVA|A Chain A, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|B Chain B, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|E Chain E, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|F Chain F, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|V Chain V, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|X Chain X, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|Y Chain Y, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|Z Chain Z, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|A Chain A, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|B Chain B, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|E Chain E, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|F Chain F, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|A Chain A, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|B Chain B, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|E Chain E, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|F Chain F, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|V Chain V, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|X Chain X, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|Y Chain Y, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|Z Chain Z, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
Length = 568
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 198 APGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNG 238
AP +R + + GD +F + E+ +VR +LPVI+ ++NN G
Sbjct: 429 APERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYG 469
>pdb|3OE1|A Chain A, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
pdb|3OE1|B Chain B, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
pdb|3OE1|C Chain C, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
pdb|3OE1|D Chain D, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
Length = 568
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 198 APGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNG 238
AP +R + + GD +F + E+ +VR +LPVI+ ++NN G
Sbjct: 429 APERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYG 469
>pdb|2VBI|A Chain A, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|B Chain B, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|C Chain C, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|D Chain D, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|E Chain E, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|F Chain F, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|G Chain G, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|H Chain H, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
Length = 566
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 201 KRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNG 238
++ V + GD +F + E+ +VRY LPVI+ ++NN G
Sbjct: 428 RQHVVMVGDGSFQLTAQEVAQMVRYELPVIIFLINNRG 465
>pdb|3LQ1|A Chain A, Crystal Structure Of
2-Succinyl-6-Hydroxy-2,4-Cyclohexadiene 1-Carboxylic
Acid Synthase2-Oxoglutarate Decarboxylase From Listeria
Monocytogenes Str. 4b F2365
pdb|3LQ1|B Chain B, Crystal Structure Of
2-Succinyl-6-Hydroxy-2,4-Cyclohexadiene 1-Carboxylic
Acid Synthase2-Oxoglutarate Decarboxylase From Listeria
Monocytogenes Str. 4b F2365
Length = 578
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 18/143 (12%)
Query: 312 NEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEG 371
+E++A + A + +K+P V L SG + F +A A ++ P++V+ +
Sbjct: 57 DERSAGFFALGLAKASKRPVVLLCTSGTAAANYFPAVAEANLSQIPLIVLTADRPHELRN 116
Query: 372 IGGFQECPQVELARPYCK---YSARPPN----IHLIGQHVEKAVRLSTFGKPGVSYLDFP 424
+G Q Q+ L + K A P N + H +AV ++ G +L+FP
Sbjct: 117 VGAPQAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFP 176
Query: 425 ANLLAQRINQSALVPTPKVLEPT 447
+ LVP +LEP+
Sbjct: 177 L--------REPLVP---ILEPS 188
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%)
Query: 54 NEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEG 113
+E++A + A + +K+P V L SG + F +A A ++ P++V+ +
Sbjct: 57 DERSAGFFALGLAKASKRPVVLLCTSGTAAANYFPAVAEANLSQIPLIVLTADRPHELRN 116
Query: 114 IGGFQECPQVELARPYCK 131
+G Q Q+ L + K
Sbjct: 117 VGAPQAMDQLHLYGSHVK 134
>pdb|2NXW|A Chain A, Crystal Structure Of Phenylpyruvate Decarboxylase Of
Azospirillum Brasilense
pdb|2NXW|B Chain B, Crystal Structure Of Phenylpyruvate Decarboxylase Of
Azospirillum Brasilense
pdb|2Q5J|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp
pdb|2Q5J|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp
pdb|2Q5L|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 2-(1- Hydroxyethyl)-3-Deaza-Thdp
pdb|2Q5L|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 2-(1- Hydroxyethyl)-3-Deaza-Thdp
pdb|2Q5O|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And Phenylpyruvate
pdb|2Q5O|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And Phenylpyruvate
pdb|2Q5Q|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And 5-Phenyl-2-Oxo-Valeric Acid
pdb|2Q5Q|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And 5-Phenyl-2-Oxo-Valeric Acid
Length = 565
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 200 GKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNN 236
GKR++ V GD AF +G EL R + I+++ NN
Sbjct: 440 GKRILTVVGDGAFQMTGWELGNCRRLGIDPIVILFNN 476
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 13 QVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLT 69
+ + +ALK +G + +FGI G +P ++A Q +H + +E A +AA A +
Sbjct: 25 EALLRALKDRGAQAMFGIPGDFALPFFKVAEETQILPLHTLS--HEPAVGFAADAAARYS 82
Query: 70 KKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGS 106
GV V G G + +A A P++VI G+
Sbjct: 83 STLGVAAVTYGAGAFNMVNAVAGAYAEKSPVVVISGA 119
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 271 QVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLT 327
+ + +ALK +G + +FGI G +P ++A Q +H + +E A +AA A +
Sbjct: 25 EALLRALKDRGAQAMFGIPGDFALPFFKVAEETQILPLHTLS--HEPAVGFAADAAARYS 82
Query: 328 KKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGS 364
GV V G G + +A A P++VI G+
Sbjct: 83 STLGVAAVTYGAGAFNMVNAVAGAYAEKSPVVVISGA 119
>pdb|1OVM|A Chain A, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
pdb|1OVM|B Chain B, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
pdb|1OVM|C Chain C, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
pdb|1OVM|D Chain D, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
Length = 552
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 199 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNG 238
P +RV+ + GD A + EL +++R + I++++NN G
Sbjct: 425 PNRRVIVLTGDGAAQLTIQELGSMLRDKQHPIILVLNNEG 464
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,226,804
Number of Sequences: 62578
Number of extensions: 1050116
Number of successful extensions: 2052
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1770
Number of HSP's gapped (non-prelim): 209
length of query: 1065
length of database: 14,973,337
effective HSP length: 109
effective length of query: 956
effective length of database: 8,152,335
effective search space: 7793632260
effective search space used: 7793632260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)