Query psy14416
Match_columns 1065
No_of_seqs 426 out of 3894
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 19:17:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14416.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14416hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1185|consensus 100.0 1E-94 2.2E-99 800.3 44.3 560 260-1056 7-570 (571)
2 COG0028 IlvB Thiamine pyrophos 100.0 1.2E-83 2.7E-88 769.8 44.1 529 267-1053 2-538 (550)
3 PRK05858 hypothetical protein; 100.0 3.4E-78 7.3E-83 731.8 47.9 531 265-1049 3-533 (542)
4 PRK08978 acetolactate synthase 100.0 2.6E-78 5.6E-83 734.5 45.2 524 267-1052 1-531 (548)
5 PRK08979 acetolactate synthase 100.0 5.8E-78 1.3E-82 733.7 48.1 543 265-1052 2-552 (572)
6 TIGR01504 glyox_carbo_lig glyo 100.0 4.9E-78 1.1E-82 735.1 46.0 540 266-1051 2-560 (588)
7 PRK11269 glyoxylate carboligas 100.0 5E-78 1.1E-82 737.0 45.9 544 265-1052 2-562 (591)
8 PRK07979 acetolactate synthase 100.0 1.4E-77 3.1E-82 731.0 47.6 543 265-1052 2-554 (574)
9 PRK06466 acetolactate synthase 100.0 2.9E-77 6.4E-82 728.3 46.2 546 265-1053 2-555 (574)
10 TIGR03254 oxalate_oxc oxalyl-C 100.0 3.2E-77 6.9E-82 725.5 46.2 547 267-1061 3-553 (554)
11 PRK08322 acetolactate synthase 100.0 3.3E-77 7.1E-82 725.2 46.2 527 267-1052 1-534 (547)
12 PRK08617 acetolactate synthase 100.0 2.9E-77 6.3E-82 725.9 45.4 538 266-1059 4-549 (552)
13 PRK06965 acetolactate synthase 100.0 4.9E-77 1.1E-81 727.2 47.1 541 265-1052 19-568 (587)
14 PRK09107 acetolactate synthase 100.0 7.7E-77 1.7E-81 725.5 46.2 540 265-1051 9-559 (595)
15 PRK06048 acetolactate synthase 100.0 1.1E-76 2.4E-81 721.4 47.3 531 266-1052 7-544 (561)
16 PRK07789 acetolactate synthase 100.0 1.1E-76 2.4E-81 727.4 47.0 545 265-1051 29-581 (612)
17 PRK07710 acetolactate synthase 100.0 1.3E-76 2.9E-81 722.1 46.6 536 264-1053 13-555 (571)
18 PRK08155 acetolactate synthase 100.0 1.6E-76 3.4E-81 720.8 47.1 533 264-1053 10-550 (564)
19 PRK07282 acetolactate synthase 100.0 2E-76 4.3E-81 718.9 46.7 531 265-1051 8-546 (566)
20 PRK06456 acetolactate synthase 100.0 2.6E-76 5.5E-81 720.5 47.2 538 267-1051 2-550 (572)
21 PRK06725 acetolactate synthase 100.0 3.3E-76 7.2E-81 716.5 46.9 530 266-1051 14-550 (570)
22 PRK08199 thiamine pyrophosphat 100.0 2.6E-76 5.7E-81 717.8 45.9 536 265-1059 6-551 (557)
23 PRK09259 putative oxalyl-CoA d 100.0 3.1E-76 6.7E-81 718.6 46.1 544 265-1055 8-555 (569)
24 PLN02470 acetolactate synthase 100.0 4.2E-76 9.2E-81 719.2 46.9 542 265-1052 11-563 (585)
25 PRK06882 acetolactate synthase 100.0 6.9E-76 1.5E-80 717.0 47.9 543 265-1052 2-552 (574)
26 PRK08527 acetolactate synthase 100.0 6.4E-76 1.4E-80 715.0 47.0 535 266-1052 2-544 (563)
27 PRK07418 acetolactate synthase 100.0 5.2E-76 1.1E-80 721.9 45.3 540 263-1053 15-566 (616)
28 TIGR03457 sulphoacet_xsc sulfo 100.0 7.5E-76 1.6E-80 716.6 45.9 557 266-1059 1-569 (579)
29 TIGR02418 acolac_catab acetola 100.0 6.5E-76 1.4E-80 712.1 44.7 527 269-1051 1-535 (539)
30 PRK08611 pyruvate oxidase; Pro 100.0 1E-75 2.2E-80 714.1 46.4 527 265-1053 2-537 (576)
31 CHL00099 ilvB acetohydroxyacid 100.0 3.6E-75 7.7E-80 710.6 47.0 542 265-1051 8-560 (585)
32 PRK08273 thiamine pyrophosphat 100.0 3.6E-75 7.8E-80 712.1 45.8 533 266-1050 2-550 (597)
33 PRK06457 pyruvate dehydrogenas 100.0 3.2E-75 6.9E-80 706.9 44.3 522 267-1058 2-531 (549)
34 TIGR00118 acolac_lg acetolacta 100.0 6.9E-75 1.5E-79 705.9 47.1 534 267-1052 1-542 (558)
35 PRK09124 pyruvate dehydrogenas 100.0 6.2E-75 1.4E-79 708.2 45.8 527 266-1052 2-536 (574)
36 PRK06276 acetolactate synthase 100.0 1.2E-74 2.7E-79 706.4 46.8 534 267-1049 1-546 (586)
37 TIGR02720 pyruv_oxi_spxB pyruv 100.0 8.4E-75 1.8E-79 705.9 44.2 528 269-1053 1-539 (575)
38 PRK07525 sulfoacetaldehyde ace 100.0 2E-74 4.3E-79 704.9 45.6 551 266-1050 5-566 (588)
39 PRK06546 pyruvate dehydrogenas 100.0 2.3E-74 5E-79 702.0 45.2 533 266-1059 2-542 (578)
40 PRK07524 hypothetical protein; 100.0 3.4E-74 7.5E-79 696.5 43.1 520 268-1048 3-531 (535)
41 PRK08266 hypothetical protein; 100.0 8.2E-74 1.8E-78 694.5 44.9 525 265-1054 2-533 (542)
42 PRK06112 acetolactate synthase 100.0 1.6E-73 3.5E-78 696.3 46.6 545 264-1053 11-567 (578)
43 PRK06154 hypothetical protein; 100.0 2.3E-73 4.9E-78 691.1 46.8 532 264-1051 17-560 (565)
44 PRK07064 hypothetical protein; 100.0 1.6E-73 3.6E-78 692.4 44.9 517 266-1047 2-529 (544)
45 PRK08327 acetolactate synthase 100.0 1.9E-72 4E-77 684.6 43.1 538 266-1047 6-568 (569)
46 PRK07092 benzoylformate decarb 100.0 4.2E-71 9.1E-76 668.5 41.4 513 265-1046 10-530 (530)
47 PRK07586 hypothetical protein; 100.0 7.4E-71 1.6E-75 664.5 42.5 501 267-1045 1-514 (514)
48 PLN02573 pyruvate decarboxylas 100.0 1.6E-71 3.4E-76 676.1 36.2 532 263-1062 12-567 (578)
49 PRK12474 hypothetical protein; 100.0 1.2E-70 2.6E-75 662.5 42.5 503 266-1045 4-518 (518)
50 TIGR03394 indol_phenyl_DC indo 100.0 5.8E-71 1.2E-75 666.0 35.1 509 268-1051 1-526 (535)
51 PRK07449 2-succinyl-5-enolpyru 100.0 8.6E-71 1.9E-75 671.6 35.2 538 266-1060 8-561 (568)
52 TIGR03393 indolpyr_decarb indo 100.0 1.3E-69 2.9E-74 656.4 35.1 507 268-1050 2-531 (539)
53 COG1165 MenD 2-succinyl-6-hydr 100.0 3.3E-68 7.2E-73 605.4 32.0 538 266-1057 7-557 (566)
54 KOG4166|consensus 100.0 6.2E-67 1.3E-71 567.0 33.3 540 265-1051 89-652 (675)
55 PLN02980 2-oxoglutarate decarb 100.0 2.6E-67 5.7E-72 697.1 36.8 573 267-1059 301-902 (1655)
56 COG3961 Pyruvate decarboxylase 100.0 3.3E-62 7.2E-67 549.7 33.8 519 265-1053 2-542 (557)
57 TIGR00173 menD 2-succinyl-5-en 100.0 1.5E-59 3.3E-64 553.7 28.1 415 269-780 2-431 (432)
58 COG3962 Acetolactate synthase 100.0 4E-56 8.6E-61 489.2 35.1 550 265-1059 5-588 (617)
59 KOG1184|consensus 100.0 2.3E-56 5.1E-61 500.2 32.9 526 266-1060 3-552 (561)
60 COG3960 Glyoxylate carboligase 100.0 1.2E-55 2.6E-60 467.2 23.0 543 265-1051 2-561 (592)
61 COG0028 IlvB Thiamine pyrophos 100.0 1.1E-52 2.4E-57 503.1 26.6 296 8-340 1-533 (550)
62 KOG1185|consensus 100.0 1E-46 2.2E-51 418.7 26.9 308 3-341 8-563 (571)
63 PRK07979 acetolactate synthase 100.0 2.2E-46 4.7E-51 457.1 24.6 155 6-160 1-156 (574)
64 PRK08979 acetolactate synthase 100.0 3E-46 6.6E-51 455.4 24.8 155 6-160 1-156 (572)
65 PRK07282 acetolactate synthase 100.0 4.3E-46 9.4E-51 453.2 25.7 300 1-337 1-540 (566)
66 PRK06466 acetolactate synthase 100.0 7.5E-46 1.6E-50 452.4 26.1 155 6-160 1-156 (574)
67 TIGR01504 glyox_carbo_lig glyo 100.0 4.2E-46 9.2E-51 454.6 23.6 153 8-160 2-156 (588)
68 PRK06048 acetolactate synthase 100.0 1.9E-45 4.2E-50 447.6 29.1 156 5-160 4-159 (561)
69 PRK08978 acetolactate synthase 100.0 1E-45 2.2E-50 449.2 25.7 268 9-294 1-499 (548)
70 PRK12474 hypothetical protein; 100.0 2.3E-45 5E-50 442.9 27.6 154 7-160 3-157 (518)
71 PRK09107 acetolactate synthase 100.0 1.5E-45 3.2E-50 450.4 25.7 154 7-160 9-163 (595)
72 PRK06965 acetolactate synthase 100.0 1.8E-45 4E-50 449.6 26.4 154 7-160 19-173 (587)
73 PRK07586 hypothetical protein; 100.0 2.4E-45 5.2E-50 442.9 26.0 152 9-160 1-153 (514)
74 PRK06725 acetolactate synthase 100.0 4.8E-45 1E-49 443.9 28.2 267 8-293 14-518 (570)
75 PRK05858 hypothetical protein; 100.0 5.2E-45 1.1E-49 442.1 26.9 269 7-294 3-504 (542)
76 PRK11269 glyoxylate carboligas 100.0 2.6E-45 5.6E-50 448.9 24.3 155 6-160 1-157 (591)
77 PRK08322 acetolactate synthase 100.0 4.9E-45 1.1E-49 443.6 26.1 152 9-160 1-152 (547)
78 PRK07710 acetolactate synthase 100.0 7.1E-45 1.5E-49 443.6 27.3 156 5-160 12-167 (571)
79 PLN02470 acetolactate synthase 100.0 7.8E-45 1.7E-49 444.2 27.5 155 6-160 10-165 (585)
80 PRK08617 acetolactate synthase 100.0 5.3E-45 1.1E-49 443.4 25.0 154 7-160 3-156 (552)
81 PRK06456 acetolactate synthase 100.0 7.6E-45 1.6E-49 443.8 26.2 152 9-160 2-157 (572)
82 PRK07418 acetolactate synthase 100.0 1.1E-44 2.5E-49 444.9 27.8 157 4-160 14-174 (616)
83 PRK08155 acetolactate synthase 100.0 1.4E-44 3.1E-49 440.5 28.2 157 4-160 8-165 (564)
84 TIGR02418 acolac_catab acetola 100.0 1E-44 2.2E-49 439.8 25.3 150 11-160 1-150 (539)
85 PRK08527 acetolactate synthase 100.0 2.2E-44 4.7E-49 438.6 28.1 153 8-160 2-155 (563)
86 KOG4166|consensus 100.0 1.4E-45 3.1E-50 400.8 15.2 270 7-295 89-622 (675)
87 TIGR03457 sulphoacet_xsc sulfo 100.0 1.6E-44 3.5E-49 441.2 25.6 152 8-160 1-152 (579)
88 PRK06457 pyruvate dehydrogenas 100.0 2E-44 4.3E-49 437.7 26.1 151 9-160 2-152 (549)
89 PRK08611 pyruvate oxidase; Pro 100.0 3.3E-44 7E-49 437.7 26.1 154 6-160 1-156 (576)
90 PRK09124 pyruvate dehydrogenas 100.0 3.7E-44 8.1E-49 437.7 26.4 153 7-160 1-154 (574)
91 PRK07789 acetolactate synthase 100.0 2.5E-44 5.3E-49 441.7 24.1 154 7-160 29-183 (612)
92 PRK08273 thiamine pyrophosphat 100.0 4.2E-44 9.1E-49 438.5 25.2 150 7-156 1-153 (597)
93 PRK06882 acetolactate synthase 100.0 5.2E-44 1.1E-48 436.7 24.6 155 6-160 1-156 (574)
94 CHL00099 ilvB acetohydroxyacid 100.0 2.1E-43 4.5E-48 431.4 28.5 156 5-160 6-165 (585)
95 TIGR03254 oxalate_oxc oxalyl-C 100.0 1.4E-43 3.1E-48 430.8 26.4 153 8-160 2-156 (554)
96 PRK07524 hypothetical protein; 100.0 1.5E-43 3.2E-48 429.2 25.9 152 9-160 2-156 (535)
97 PRK06546 pyruvate dehydrogenas 100.0 1.8E-43 3.9E-48 431.1 26.7 153 7-160 1-154 (578)
98 PRK06276 acetolactate synthase 100.0 2.6E-43 5.6E-48 430.9 27.2 152 9-160 1-152 (586)
99 PRK08199 thiamine pyrophosphat 100.0 2.3E-43 5.1E-48 429.3 26.3 155 6-160 5-160 (557)
100 TIGR00118 acolac_lg acetolacta 100.0 2.9E-43 6.3E-48 428.7 26.8 152 9-160 1-153 (558)
101 PRK06154 hypothetical protein; 100.0 9.5E-43 2.1E-47 423.3 27.9 154 2-160 13-168 (565)
102 TIGR02720 pyruv_oxi_spxB pyruv 100.0 3.5E-43 7.5E-48 428.6 23.5 149 11-160 1-151 (575)
103 PRK08266 hypothetical protein; 100.0 1E-42 2.2E-47 422.7 27.3 155 6-160 1-160 (542)
104 PRK07525 sulfoacetaldehyde ace 100.0 1E-42 2.2E-47 425.8 27.4 153 7-160 4-156 (588)
105 PRK07064 hypothetical protein; 100.0 6.1E-43 1.3E-47 424.9 24.7 153 8-160 2-158 (544)
106 PRK09259 putative oxalyl-CoA d 100.0 1.2E-42 2.6E-47 423.8 26.7 154 7-160 8-163 (569)
107 PLN02573 pyruvate decarboxylas 100.0 1.2E-42 2.6E-47 423.2 22.0 157 2-160 9-174 (578)
108 PRK08327 acetolactate synthase 100.0 1.3E-41 2.9E-46 414.2 27.9 153 8-160 6-173 (569)
109 TIGR03394 indol_phenyl_DC indo 100.0 7.6E-42 1.7E-46 412.9 21.4 150 10-160 1-157 (535)
110 PRK07092 benzoylformate decarb 100.0 5.8E-41 1.3E-45 406.0 27.7 153 7-160 10-163 (530)
111 PRK06112 acetolactate synthase 100.0 6.5E-41 1.4E-45 409.5 24.7 156 3-160 8-163 (578)
112 TIGR03393 indolpyr_decarb indo 100.0 1.8E-40 3.9E-45 402.2 20.6 147 9-160 1-158 (539)
113 COG3961 Pyruvate decarboxylase 100.0 2.5E-39 5.5E-44 365.1 19.1 269 6-279 1-519 (557)
114 PRK07449 2-succinyl-5-enolpyru 100.0 9.5E-39 2E-43 390.1 22.5 132 8-139 8-140 (568)
115 cd07039 TPP_PYR_POX Pyrimidine 100.0 6.6E-37 1.4E-41 313.9 14.6 162 268-430 1-163 (164)
116 KOG1184|consensus 100.0 8.4E-36 1.8E-40 335.1 18.9 148 7-155 2-158 (561)
117 COG3960 Glyoxylate carboligase 100.0 9.7E-37 2.1E-41 323.7 10.1 274 6-293 1-520 (592)
118 cd07037 TPP_PYR_MenD Pyrimidin 100.0 7.5E-36 1.6E-40 304.2 12.9 154 272-425 2-162 (162)
119 PLN02980 2-oxoglutarate decarb 100.0 1.2E-34 2.5E-39 386.1 22.6 148 9-156 301-455 (1655)
120 PF02776 TPP_enzyme_N: Thiamin 100.0 1.1E-34 2.4E-39 300.4 13.7 169 267-435 1-171 (172)
121 cd07039 TPP_PYR_POX Pyrimidine 100.0 3.7E-34 8E-39 293.6 16.0 159 10-171 1-160 (164)
122 cd07037 TPP_PYR_MenD Pyrimidin 100.0 3.2E-34 6.9E-39 292.2 15.2 151 14-164 2-159 (162)
123 cd07038 TPP_PYR_PDC_IPDC_like 100.0 2E-32 4.3E-37 280.4 12.4 153 271-425 1-162 (162)
124 TIGR00173 menD 2-succinyl-5-en 100.0 1.5E-31 3.2E-36 315.9 19.2 218 11-232 2-244 (432)
125 PF02776 TPP_enzyme_N: Thiamin 100.0 9.7E-32 2.1E-36 278.5 15.3 156 9-164 1-158 (172)
126 cd07038 TPP_PYR_PDC_IPDC_like 100.0 4.5E-31 9.7E-36 270.4 14.8 150 13-164 1-159 (162)
127 cd07035 TPP_PYR_POX_like Pyrim 100.0 2.8E-30 6E-35 262.9 13.2 155 271-425 1-155 (155)
128 cd07035 TPP_PYR_POX_like Pyrim 100.0 2.5E-28 5.3E-33 248.6 15.1 152 13-164 1-152 (155)
129 COG3962 Acetolactate synthase 100.0 2.8E-27 6E-32 261.9 19.6 232 7-244 5-504 (617)
130 cd07034 TPP_PYR_PFOR_IOR-alpha 99.9 3.8E-26 8.1E-31 233.8 14.9 150 11-164 1-157 (160)
131 cd07034 TPP_PYR_PFOR_IOR-alpha 99.9 8E-26 1.7E-30 231.4 12.3 151 269-423 1-158 (160)
132 TIGR03297 Ppyr-DeCO2ase phosph 99.9 1.8E-24 3.9E-29 247.0 18.3 209 23-239 1-279 (361)
133 cd06586 TPP_enzyme_PYR Pyrimid 99.9 1.1E-24 2.5E-29 220.8 12.6 153 271-425 1-154 (154)
134 cd06586 TPP_enzyme_PYR Pyrimid 99.9 2.9E-23 6.3E-28 210.6 14.8 150 13-164 1-151 (154)
135 TIGR03845 sulfopyru_alph sulfo 99.9 5.3E-22 1.2E-26 201.7 12.2 140 13-164 2-151 (157)
136 TIGR03845 sulfopyru_alph sulfo 99.9 3.2E-22 6.9E-27 203.3 9.6 145 271-427 2-156 (157)
137 cd02006 TPP_Gcl Thiamine pyrop 99.9 4.9E-22 1.1E-26 211.3 11.5 135 867-1052 59-200 (202)
138 TIGR03297 Ppyr-DeCO2ase phosph 99.9 8.8E-21 1.9E-25 216.8 22.1 88 281-368 1-92 (361)
139 cd02013 TPP_Xsc_like Thiamine 99.9 1.2E-21 2.5E-26 207.3 11.6 132 866-1055 54-188 (196)
140 cd02003 TPP_IolD Thiamine pyro 99.9 2E-21 4.3E-26 207.0 11.7 144 866-1062 49-200 (205)
141 COG1165 MenD 2-succinyl-6-hydr 99.8 2.4E-20 5.2E-25 214.4 18.1 152 9-160 8-167 (566)
142 cd02010 TPP_ALS Thiamine pyrop 99.8 6E-21 1.3E-25 198.6 10.3 125 868-1051 51-175 (177)
143 cd02015 TPP_AHAS Thiamine pyro 99.8 1.9E-20 4.1E-25 196.6 12.8 130 867-1053 52-181 (186)
144 TIGR03336 IOR_alpha indolepyru 99.8 1.6E-18 3.4E-23 212.4 30.6 151 266-424 4-162 (595)
145 PF00205 TPP_enzyme_M: Thiamin 99.8 2.7E-20 5.8E-25 185.7 9.6 130 489-618 1-137 (137)
146 cd02004 TPP_BZL_OCoD_HPCL Thia 99.8 6.5E-20 1.4E-24 190.1 12.6 122 868-1046 51-172 (172)
147 cd02009 TPP_SHCHC_synthase Thi 99.8 1E-19 2.2E-24 189.2 9.9 122 868-1046 54-175 (175)
148 cd02014 TPP_POX Thiamine pyrop 99.8 1.5E-19 3.2E-24 188.5 10.2 123 868-1049 54-176 (178)
149 cd02005 TPP_PDC_IPDC Thiamine 99.8 2.4E-19 5.2E-24 187.6 11.4 125 866-1051 51-179 (183)
150 cd02002 TPP_BFDC Thiamine pyro 99.8 3.4E-18 7.3E-23 178.2 12.5 126 868-1045 52-178 (178)
151 PRK06163 hypothetical protein; 99.8 2.8E-18 6.2E-23 181.4 11.2 120 864-1050 56-177 (202)
152 cd02013 TPP_Xsc_like Thiamine 99.7 1.2E-17 2.5E-22 176.9 10.8 112 163-293 38-149 (196)
153 cd02006 TPP_Gcl Thiamine pyrop 99.7 9.6E-18 2.1E-22 178.4 10.1 82 163-253 42-123 (202)
154 cd03375 TPP_OGFOR Thiamine pyr 99.7 4.3E-17 9.3E-22 172.0 11.7 129 866-1046 52-184 (193)
155 cd02015 TPP_AHAS Thiamine pyro 99.7 6.5E-17 1.4E-21 169.8 11.3 77 163-245 35-111 (186)
156 cd02008 TPP_IOR_alpha Thiamine 99.7 6.9E-17 1.5E-21 168.4 11.2 122 865-1045 51-176 (178)
157 PF02775 TPP_enzyme_C: Thiamin 99.7 4.6E-17 1E-21 165.5 9.2 123 866-1043 29-153 (153)
158 cd02010 TPP_ALS Thiamine pyrop 99.7 5E-17 1.1E-21 169.2 8.6 77 163-245 33-109 (177)
159 cd02001 TPP_ComE_PpyrDC Thiami 99.7 1.2E-16 2.5E-21 163.1 10.5 116 864-1048 41-157 (157)
160 cd02004 TPP_BZL_OCoD_HPCL Thia 99.7 2.1E-16 4.5E-21 163.9 12.2 77 163-245 33-109 (172)
161 cd03371 TPP_PpyrDC Thiamine py 99.7 1.6E-16 3.5E-21 166.8 10.9 119 865-1051 48-168 (188)
162 cd02003 TPP_IolD Thiamine pyro 99.7 1.9E-16 4.1E-21 168.8 11.1 77 163-245 33-109 (205)
163 TIGR03336 IOR_alpha indolepyru 99.7 9.9E-15 2.2E-19 179.1 25.5 102 8-111 4-111 (595)
164 cd03376 TPP_PFOR_porB_like Thi 99.7 3.3E-16 7.1E-21 170.0 11.0 128 867-1046 64-200 (235)
165 cd02018 TPP_PFOR Thiamine pyro 99.6 6.3E-16 1.4E-20 168.1 11.6 136 867-1049 66-206 (237)
166 cd03372 TPP_ComE Thiamine pyro 99.6 9E-16 1.9E-20 160.1 11.3 119 865-1053 42-162 (179)
167 cd00568 TPP_enzymes Thiamine p 99.6 8.5E-16 1.8E-20 158.1 10.4 122 866-1045 47-168 (168)
168 TIGR03846 sulfopy_beta sulfopy 99.6 1.3E-15 2.8E-20 159.0 10.8 121 864-1053 41-163 (181)
169 cd02009 TPP_SHCHC_synthase Thi 99.6 5.4E-16 1.2E-20 161.3 7.0 76 162-244 34-110 (175)
170 PRK11867 2-oxoglutarate ferred 99.6 2.1E-15 4.6E-20 167.5 11.6 141 868-1060 72-216 (286)
171 PF02775 TPP_enzyme_C: Thiamin 99.6 1.3E-15 2.9E-20 154.8 9.1 77 163-245 13-89 (153)
172 PRK09628 oorB 2-oxoglutarate-a 99.6 2.1E-15 4.6E-20 166.4 9.9 134 866-1050 69-205 (277)
173 cd02005 TPP_PDC_IPDC Thiamine 99.6 2.1E-15 4.6E-20 157.9 8.0 77 163-245 35-111 (183)
174 cd02002 TPP_BFDC Thiamine pyro 99.6 8.2E-15 1.8E-19 152.7 11.9 76 163-245 35-110 (178)
175 PRK05778 2-oxoglutarate ferred 99.6 7.2E-15 1.6E-19 163.9 11.7 128 868-1046 73-203 (301)
176 PRK06163 hypothetical protein; 99.6 3.5E-15 7.5E-20 158.0 8.0 59 177-239 56-115 (202)
177 cd02014 TPP_POX Thiamine pyrop 99.5 6.9E-15 1.5E-19 153.4 7.8 77 163-245 36-112 (178)
178 cd02001 TPP_ComE_PpyrDC Thiami 99.5 1.3E-14 2.9E-19 148.0 7.2 68 167-244 34-102 (157)
179 PRK11869 2-oxoacid ferredoxin 99.5 4.5E-14 9.8E-19 155.7 11.3 127 868-1046 63-193 (280)
180 PRK11866 2-oxoacid ferredoxin 99.5 5.1E-14 1.1E-18 155.4 11.6 140 868-1059 62-205 (279)
181 TIGR03846 sulfopy_beta sulfopy 99.5 2.3E-14 5E-19 149.6 8.1 68 167-244 34-102 (181)
182 cd02008 TPP_IOR_alpha Thiamine 99.5 3.9E-14 8.5E-19 147.8 9.8 64 176-245 49-113 (178)
183 cd03375 TPP_OGFOR Thiamine pyr 99.5 4.7E-14 1E-18 149.0 9.0 63 177-245 50-113 (193)
184 cd03371 TPP_PpyrDC Thiamine py 99.5 6.5E-14 1.4E-18 147.2 8.3 66 167-239 40-106 (188)
185 TIGR02177 PorB_KorB 2-oxoacid: 99.5 1.6E-13 3.4E-18 152.0 10.5 143 868-1061 56-201 (287)
186 cd00568 TPP_enzymes Thiamine p 99.4 1E-12 2.2E-17 135.2 11.4 70 166-239 34-103 (168)
187 cd03372 TPP_ComE Thiamine pyro 99.4 6.1E-13 1.3E-17 138.9 7.6 58 177-239 41-99 (179)
188 cd03376 TPP_PFOR_porB_like Thi 99.4 9.6E-13 2.1E-17 143.0 8.1 60 178-243 62-122 (235)
189 PRK11867 2-oxoglutarate ferred 99.3 2.9E-12 6.3E-17 142.6 9.7 69 171-245 61-131 (286)
190 PRK05778 2-oxoglutarate ferred 99.3 4.8E-12 1E-16 141.5 10.7 69 171-245 62-132 (301)
191 cd02018 TPP_PFOR Thiamine pyro 99.3 3.3E-12 7.2E-17 139.0 7.2 66 177-244 63-130 (237)
192 TIGR02177 PorB_KorB 2-oxoacid: 99.3 1.3E-11 2.8E-16 136.9 11.8 70 170-245 44-115 (287)
193 PRK09628 oorB 2-oxoglutarate-a 99.3 5.2E-12 1.1E-16 139.7 7.8 63 177-245 67-130 (277)
194 PRK11869 2-oxoacid ferredoxin 99.2 1.6E-11 3.4E-16 135.7 8.8 63 177-245 59-122 (280)
195 PRK11866 2-oxoacid ferredoxin 99.2 1.7E-11 3.7E-16 135.5 8.7 63 177-245 58-121 (279)
196 cd02012 TPP_TK Thiamine pyroph 99.1 1.8E-10 3.9E-15 127.2 10.2 131 859-1052 99-233 (255)
197 TIGR03181 PDH_E1_alph_x pyruva 99.1 2.7E-10 5.9E-15 130.6 9.6 117 866-1047 123-247 (341)
198 cd02012 TPP_TK Thiamine pyroph 99.0 2.3E-09 4.9E-14 118.4 11.7 64 176-239 103-168 (255)
199 cd02000 TPP_E1_PDC_ADC_BCADC T 99.0 2.8E-09 6E-14 120.1 12.5 84 156-245 85-170 (293)
200 cd02000 TPP_E1_PDC_ADC_BCADC T 99.0 2E-09 4.3E-14 121.3 10.7 121 863-1047 102-229 (293)
201 TIGR03182 PDH_E1_alph_y pyruva 98.9 5.1E-09 1.1E-13 118.9 10.5 118 865-1047 110-235 (315)
202 TIGR03182 PDH_E1_alph_y pyruva 98.9 7.3E-09 1.6E-13 117.7 11.6 84 156-245 91-176 (315)
203 TIGR00315 cdhB CO dehydrogenas 98.9 9.2E-09 2E-13 104.5 10.3 99 490-591 18-133 (162)
204 PRK00945 acetyl-CoA decarbonyl 98.9 1.1E-08 2.5E-13 104.5 10.4 99 490-591 25-141 (171)
205 PRK05899 transketolase; Review 98.8 5.8E-08 1.3E-12 120.5 16.8 114 306-425 368-485 (624)
206 TIGR03181 PDH_E1_alph_x pyruva 98.8 1.2E-08 2.7E-13 117.0 10.0 61 177-237 121-183 (341)
207 CHL00149 odpA pyruvate dehydro 98.8 3.4E-08 7.3E-13 113.2 12.2 79 156-237 109-196 (341)
208 PRK05899 transketolase; Review 98.8 1.7E-08 3.6E-13 125.2 9.9 134 857-1051 110-253 (624)
209 PRK05444 1-deoxy-D-xylulose-5- 98.8 7.1E-08 1.5E-12 118.6 14.7 242 176-427 115-440 (580)
210 CHL00149 odpA pyruvate dehydro 98.7 2.8E-08 6E-13 113.9 8.6 120 864-1046 127-259 (341)
211 PRK12571 1-deoxy-D-xylulose-5- 98.6 8.9E-07 1.9E-11 109.7 18.1 111 310-426 367-479 (641)
212 PLN02374 pyruvate dehydrogenas 98.5 8.3E-07 1.8E-11 104.2 13.1 79 156-237 175-262 (433)
213 cd02007 TPP_DXS Thiamine pyrop 98.5 8.4E-07 1.8E-11 94.0 11.3 62 176-237 73-136 (195)
214 PLN02374 pyruvate dehydrogenas 98.3 1.2E-06 2.7E-11 102.9 9.7 90 931-1046 228-325 (433)
215 PRK05444 1-deoxy-D-xylulose-5- 98.3 1.4E-06 2.9E-11 107.4 9.6 133 858-1051 110-247 (580)
216 cd02007 TPP_DXS Thiamine pyrop 98.3 2.4E-06 5.1E-11 90.6 9.3 116 862-1048 72-192 (195)
217 PRK11865 pyruvate ferredoxin o 98.1 1.2E-05 2.6E-10 89.9 11.4 108 931-1046 96-211 (299)
218 TIGR00204 dxs 1-deoxy-D-xylulo 98.1 6.2E-05 1.3E-09 93.2 17.0 62 177-239 110-173 (617)
219 PLN02582 1-deoxy-D-xylulose-5- 98.1 8.1E-05 1.8E-09 92.2 17.2 61 177-237 143-205 (677)
220 PRK12753 transketolase; Review 98.0 7.9E-05 1.7E-09 92.9 17.1 113 309-426 407-521 (663)
221 COG4032 Predicted thiamine-pyr 98.0 8.7E-06 1.9E-10 78.7 6.6 147 6-155 1-152 (172)
222 PRK09627 oorA 2-oxoglutarate-a 98.0 7.9E-05 1.7E-09 86.6 14.9 152 8-163 5-166 (375)
223 PRK08659 2-oxoglutarate ferred 98.0 9E-05 1.9E-09 86.4 15.4 154 7-163 5-167 (376)
224 PRK08659 2-oxoglutarate ferred 98.0 3.8E-05 8.3E-10 89.4 12.2 157 265-425 5-171 (376)
225 COG4231 Indolepyruvate ferredo 98.0 0.0033 7.1E-08 75.4 27.6 155 267-427 16-177 (640)
226 PTZ00089 transketolase; Provis 97.9 0.00012 2.5E-09 91.5 15.6 116 306-426 404-522 (661)
227 PRK11864 2-ketoisovalerate fer 97.9 4.9E-05 1.1E-09 85.0 10.9 108 931-1046 97-207 (300)
228 PLN02234 1-deoxy-D-xylulose-5- 97.9 0.00019 4E-09 88.3 16.5 243 177-427 176-518 (641)
229 PRK12315 1-deoxy-D-xylulose-5- 97.9 0.00017 3.7E-09 88.8 15.8 241 177-426 112-437 (581)
230 TIGR00232 tktlase_bact transke 97.8 0.00031 6.7E-09 87.7 16.7 116 306-426 397-515 (653)
231 PRK09627 oorA 2-oxoglutarate-a 97.8 0.00016 3.5E-09 84.1 13.2 155 266-425 5-170 (375)
232 COG1013 PorB Pyruvate:ferredox 97.8 0.00011 2.3E-09 82.6 10.3 107 931-1046 93-204 (294)
233 PRK07119 2-ketoisovalerate fer 97.8 0.00038 8.3E-09 80.5 14.8 150 8-163 6-167 (352)
234 TIGR03710 OAFO_sf 2-oxoacid:ac 97.7 0.00028 6E-09 86.7 14.0 154 7-163 194-356 (562)
235 PRK08366 vorA 2-ketoisovalerat 97.7 0.00045 9.8E-09 80.7 15.1 151 7-163 4-162 (390)
236 TIGR03710 OAFO_sf 2-oxoacid:ac 97.7 0.00014 2.9E-09 89.3 11.1 158 265-426 194-361 (562)
237 PRK13030 2-oxoacid ferredoxin 97.7 0.014 3.1E-07 76.2 29.5 154 265-423 18-200 (1159)
238 PRK07119 2-ketoisovalerate fer 97.7 0.00029 6.3E-09 81.5 13.0 154 266-425 6-171 (352)
239 PRK08367 porA pyruvate ferredo 97.7 0.00058 1.3E-08 80.0 15.2 145 7-157 5-158 (394)
240 PLN02790 transketolase 97.6 0.00012 2.7E-09 91.2 9.0 97 931-1050 142-242 (654)
241 PRK09193 indolepyruvate ferred 97.6 0.035 7.7E-07 72.4 31.0 154 265-424 26-209 (1165)
242 PRK11865 pyruvate ferredoxin o 97.6 0.00024 5.2E-09 79.6 9.8 63 177-239 68-131 (299)
243 PRK12315 1-deoxy-D-xylulose-5- 97.6 0.00013 2.9E-09 89.8 8.4 107 931-1052 140-249 (581)
244 PRK09622 porA pyruvate flavodo 97.6 0.0007 1.5E-08 79.8 14.1 152 7-163 11-171 (407)
245 PRK12571 1-deoxy-D-xylulose-5- 97.6 0.00015 3.1E-09 90.3 8.5 137 864-1051 122-288 (641)
246 PF01855 POR_N: Pyruvate flavo 97.6 0.00041 8.8E-09 75.4 10.8 146 276-424 2-153 (230)
247 COG4231 Indolepyruvate ferredo 97.6 0.0034 7.4E-08 75.3 18.9 101 8-111 15-123 (640)
248 PLN02269 Pyruvate dehydrogenas 97.5 0.00081 1.7E-08 77.8 12.7 80 156-239 119-200 (362)
249 PF01855 POR_N: Pyruvate flavo 97.5 0.00058 1.3E-08 74.3 10.6 143 18-163 2-150 (230)
250 PRK08366 vorA 2-ketoisovalerat 97.5 0.00066 1.4E-08 79.4 11.6 152 266-423 5-164 (390)
251 COG4032 Predicted thiamine-pyr 97.5 0.00039 8.5E-09 67.6 7.7 160 265-428 2-166 (172)
252 PRK11864 2-ketoisovalerate fer 97.4 0.00069 1.5E-08 76.0 10.3 118 177-300 68-190 (300)
253 PTZ00089 transketolase; Provis 97.4 0.00035 7.6E-09 87.3 8.6 94 931-1047 153-250 (661)
254 TIGR00232 tktlase_bact transke 97.4 0.00047 1E-08 86.0 9.1 97 931-1050 147-246 (653)
255 cd03377 TPP_PFOR_PNO Thiamine 97.4 0.0008 1.7E-08 76.8 10.0 107 931-1046 156-267 (365)
256 PRK08367 porA pyruvate ferredo 97.3 0.0022 4.9E-08 75.1 14.0 154 266-424 6-168 (394)
257 PRK09622 porA pyruvate flavodo 97.3 0.0011 2.4E-08 78.2 11.5 155 266-425 12-175 (407)
258 PRK12754 transketolase; Review 97.3 0.00049 1.1E-08 85.5 8.5 98 931-1051 151-251 (663)
259 PF00456 Transketolase_N: Tran 97.3 0.00038 8.2E-09 79.6 6.7 119 177-336 110-241 (332)
260 PRK12753 transketolase; Review 97.3 0.00048 1E-08 86.0 7.9 98 931-1051 151-251 (663)
261 PLN02790 transketolase 97.3 0.0016 3.6E-08 81.3 12.2 120 176-336 103-236 (654)
262 COG1880 CdhB CO dehydrogenase/ 97.2 0.00063 1.4E-08 67.5 6.6 80 491-570 27-120 (170)
263 COG1154 Dxs Deoxyxylulose-5-ph 97.2 0.0075 1.6E-07 72.1 16.6 110 310-426 364-476 (627)
264 PRK12754 transketolase; Review 97.1 0.0021 4.5E-08 80.1 11.3 120 176-336 112-244 (663)
265 cd02017 TPP_E1_EcPDC_like Thia 97.1 0.0031 6.8E-08 72.7 11.6 64 176-239 116-188 (386)
266 PRK13029 2-oxoacid ferredoxin 97.0 0.97 2.1E-05 59.5 33.5 157 265-426 29-214 (1186)
267 COG0674 PorA Pyruvate:ferredox 97.0 0.011 2.3E-07 68.8 14.7 151 6-162 3-160 (365)
268 PLN02225 1-deoxy-D-xylulose-5- 96.9 0.013 2.9E-07 72.6 15.5 56 183-239 194-251 (701)
269 COG1071 AcoA Pyruvate/2-oxoglu 96.8 0.0033 7.3E-08 71.8 8.7 89 931-1047 164-262 (358)
270 COG3959 Transketolase, N-termi 96.8 0.0082 1.8E-07 63.5 10.3 105 177-301 118-224 (243)
271 cd02016 TPP_E1_OGDC_like Thiam 96.8 0.0078 1.7E-07 66.5 10.5 92 929-1047 143-247 (265)
272 PF00456 Transketolase_N: Tran 96.7 0.00086 1.9E-08 76.7 2.7 152 851-1060 96-259 (332)
273 PF00676 E1_dh: Dehydrogenase 96.5 0.003 6.4E-08 71.7 5.4 89 931-1046 128-225 (300)
274 cd02011 TPP_PK Thiamine pyroph 96.5 0.018 4E-07 62.1 10.8 100 177-299 61-165 (227)
275 KOG0523|consensus 96.5 0.063 1.4E-06 64.2 15.9 66 173-238 113-181 (632)
276 COG0674 PorA Pyruvate:ferredox 96.4 0.018 3.8E-07 67.1 11.2 154 265-424 4-164 (365)
277 TIGR03186 AKGDH_not_PDH alpha- 96.4 0.02 4.2E-07 72.8 12.0 64 176-239 187-259 (889)
278 PF00676 E1_dh: Dehydrogenase 96.4 0.0049 1.1E-07 69.9 6.0 61 177-237 100-162 (300)
279 PRK13012 2-oxoacid dehydrogena 96.3 0.018 3.9E-07 73.3 10.9 63 177-239 202-273 (896)
280 COG1071 AcoA Pyruvate/2-oxoglu 96.3 0.042 9E-07 63.0 12.7 79 156-237 117-198 (358)
281 cd02017 TPP_E1_EcPDC_like Thia 96.3 0.013 2.9E-07 67.7 8.7 33 1020-1052 291-323 (386)
282 COG1013 PorB Pyruvate:ferredox 96.2 0.014 3E-07 65.7 8.5 60 178-243 70-130 (294)
283 TIGR00759 aceE pyruvate dehydr 96.1 0.036 7.8E-07 69.7 11.8 64 176-239 187-259 (885)
284 PF13292 DXP_synthase_N: 1-deo 96.0 0.03 6.6E-07 61.2 9.6 60 178-237 111-172 (270)
285 PF13292 DXP_synthase_N: 1-deo 96.0 0.0057 1.2E-07 66.7 4.0 39 1006-1045 229-270 (270)
286 TIGR00204 dxs 1-deoxy-D-xylulo 96.0 0.022 4.7E-07 71.0 9.3 44 1008-1052 234-280 (617)
287 KOG0523|consensus 95.9 0.033 7.2E-07 66.4 10.1 138 850-1048 103-243 (632)
288 COG1154 Dxs Deoxyxylulose-5-ph 95.8 0.017 3.7E-07 69.2 7.2 45 1007-1052 238-285 (627)
289 TIGR02176 pyruv_ox_red pyruvat 95.8 0.11 2.3E-06 69.2 15.0 150 6-162 1-164 (1165)
290 COG0021 TktA Transketolase [Ca 95.8 0.14 3.1E-06 62.0 14.5 119 177-336 115-246 (663)
291 COG0021 TktA Transketolase [Ca 95.7 0.043 9.3E-07 66.3 9.7 93 931-1047 153-249 (663)
292 PLN02269 Pyruvate dehydrogenas 95.7 0.032 7E-07 64.8 8.5 87 931-1047 165-260 (362)
293 COG3959 Transketolase, N-termi 95.6 0.057 1.2E-06 57.3 9.0 133 850-1045 103-240 (243)
294 PRK09405 aceE pyruvate dehydro 95.5 0.07 1.5E-06 67.9 11.3 62 177-238 194-264 (891)
295 PRK05261 putative phosphoketol 95.3 0.21 4.5E-06 63.0 14.4 100 177-299 141-245 (785)
296 PF02552 CO_dh: CO dehydrogena 95.2 0.049 1.1E-06 56.1 7.0 105 488-594 23-141 (167)
297 PLN02225 1-deoxy-D-xylulose-5- 95.2 0.072 1.6E-06 66.3 9.8 46 1008-1053 322-371 (701)
298 cd02011 TPP_PK Thiamine pyroph 95.0 0.092 2E-06 56.8 8.7 33 1001-1033 137-171 (227)
299 PLN02234 1-deoxy-D-xylulose-5- 94.9 0.11 2.3E-06 64.6 10.1 49 1004-1052 275-327 (641)
300 TIGR00239 2oxo_dh_E1 2-oxoglut 94.7 0.083 1.8E-06 67.7 8.7 91 930-1046 347-449 (929)
301 cd02016 TPP_E1_OGDC_like Thiam 94.7 0.11 2.3E-06 57.7 8.3 60 178-237 113-183 (265)
302 COG1029 FwdB Formylmethanofura 94.5 0.32 6.9E-06 54.9 11.4 132 484-623 64-217 (429)
303 PRK13030 2-oxoacid ferredoxin 94.4 0.17 3.6E-06 66.5 10.4 103 6-109 17-148 (1159)
304 PLN02582 1-deoxy-D-xylulose-5- 93.8 0.26 5.7E-06 61.7 10.2 46 1007-1052 277-326 (677)
305 PRK09404 sucA 2-oxoglutarate d 93.7 0.2 4.4E-06 64.5 9.2 92 930-1047 346-449 (924)
306 TIGR02176 pyruv_ox_red pyruvat 93.7 0.51 1.1E-05 62.9 13.2 150 266-423 3-167 (1165)
307 PRK09193 indolepyruvate ferred 93.3 0.28 6E-06 64.4 9.6 102 7-109 26-156 (1165)
308 cd03377 TPP_PFOR_PNO Thiamine 92.7 0.37 7.9E-06 55.6 8.4 42 198-239 149-191 (365)
309 PRK13029 2-oxoacid ferredoxin 92.6 0.56 1.2E-05 61.6 10.8 91 178-289 495-586 (1186)
310 cd01408 SIRT1 SIRT1: Eukaryoti 92.2 0.14 3.1E-06 56.1 4.2 67 552-618 169-235 (235)
311 TIGR03186 AKGDH_not_PDH alpha- 92.0 0.47 1E-05 60.7 8.9 31 1020-1050 362-392 (889)
312 cd07033 TPP_PYR_DXS_TK_like Py 91.9 1.1 2.5E-05 45.7 10.2 112 306-424 40-155 (156)
313 PRK13012 2-oxoacid dehydrogena 91.9 0.58 1.3E-05 60.1 9.6 31 1020-1050 376-406 (896)
314 PRK11916 electron transfer fla 91.8 0.48 1E-05 53.9 8.0 116 498-623 193-311 (312)
315 PRK09404 sucA 2-oxoglutarate d 91.8 0.7 1.5E-05 59.7 10.2 59 179-237 315-385 (924)
316 PRK03363 fixB putative electro 91.6 0.5 1.1E-05 53.8 7.9 113 502-623 197-312 (313)
317 PRK05261 putative phosphoketol 91.3 0.86 1.9E-05 57.7 10.0 48 1001-1048 217-285 (785)
318 KOG0225|consensus 91.2 0.34 7.3E-06 54.2 5.7 72 175-249 162-235 (394)
319 TIGR00759 aceE pyruvate dehydr 91.0 0.76 1.7E-05 58.3 9.1 32 1020-1051 362-393 (885)
320 PRK09444 pntB pyridine nucleot 90.9 1 2.2E-05 53.0 9.5 133 487-621 294-461 (462)
321 TIGR00239 2oxo_dh_E1 2-oxoglut 90.9 0.86 1.9E-05 58.7 9.6 59 180-239 317-387 (929)
322 PLN00022 electron transfer fla 90.6 0.59 1.3E-05 54.1 7.2 112 503-623 239-353 (356)
323 COG2025 FixB Electron transfer 90.6 0.54 1.2E-05 53.2 6.7 116 498-623 194-311 (313)
324 PRK14138 NAD-dependent deacety 88.0 0.75 1.6E-05 50.7 5.4 69 552-622 172-241 (244)
325 PRK09405 aceE pyruvate dehydro 88.0 2 4.4E-05 55.1 9.8 32 1020-1051 368-399 (891)
326 cd02761 MopB_FmdB-FwdB The Mop 87.8 2.4 5.2E-05 50.2 10.0 113 484-598 55-182 (415)
327 smart00861 Transket_pyr Transk 86.7 4.1 8.8E-05 42.0 9.7 112 307-425 51-166 (168)
328 PF02779 Transket_pyr: Transke 86.7 1.4 3E-05 46.0 6.3 118 306-427 49-174 (178)
329 PF02233 PNTB: NAD(P) transhyd 85.0 1.7 3.6E-05 51.8 6.4 132 489-621 297-462 (463)
330 PRK00481 NAD-dependent deacety 84.1 1.7 3.6E-05 47.9 5.6 68 553-622 172-240 (242)
331 cd07033 TPP_PYR_DXS_TK_like Py 83.3 4.7 0.0001 41.2 8.2 145 12-164 4-153 (156)
332 TIGR00300 conserved hypothetic 83.0 5.8 0.00013 45.8 9.3 141 480-623 178-405 (407)
333 KOG3954|consensus 82.9 3.1 6.7E-05 45.3 6.7 123 492-623 203-334 (336)
334 PRK05333 NAD-dependent deacety 82.8 1.5 3.3E-05 49.4 4.8 69 553-623 209-278 (285)
335 cd01412 SIRT5_Af1_CobB SIRT5_A 82.0 1.8 3.9E-05 47.0 4.8 64 553-618 159-223 (224)
336 KOG0225|consensus 81.2 8.9 0.00019 43.4 9.7 32 931-969 192-226 (394)
337 COG1282 PntB NAD/NADP transhyd 80.7 6 0.00013 45.1 8.2 132 489-621 298-462 (463)
338 cd02768 MopB_NADH-Q-OR-NuoG2 M 79.3 6.6 0.00014 46.0 8.7 122 486-612 72-202 (386)
339 PTZ00408 NAD-dependent deacety 75.7 3.6 7.7E-05 45.4 4.7 67 554-622 168-235 (242)
340 KOG2882|consensus 74.6 21 0.00047 40.1 10.3 97 208-314 36-135 (306)
341 KOG1182|consensus 73.7 7 0.00015 43.7 6.1 59 179-237 194-255 (432)
342 cd01409 SIRT4 SIRT4: Eukaryoti 73.1 2.9 6.3E-05 46.5 3.3 62 552-615 198-260 (260)
343 PTZ00409 Sir2 (Silent Informat 70.4 5.8 0.00013 44.4 4.9 69 553-623 194-263 (271)
344 PTZ00182 3-methyl-2-oxobutanat 67.5 28 0.00061 40.6 9.9 157 264-429 32-209 (355)
345 PF09364 XFP_N: XFP N-terminal 66.5 9.8 0.00021 43.8 5.6 100 161-289 126-234 (379)
346 KOG2682|consensus 66.1 12 0.00027 40.2 5.9 84 556-652 210-295 (314)
347 PF13344 Hydrolase_6: Haloacid 64.0 48 0.001 31.2 9.0 80 216-305 20-100 (101)
348 TIGR03129 one_C_dehyd_B formyl 63.3 28 0.0006 41.2 9.1 111 485-598 62-188 (421)
349 cd02750 MopB_Nitrate-R-NarG-li 63.2 21 0.00045 43.2 8.1 113 486-598 88-213 (461)
350 cd07036 TPP_PYR_E1-PDHc-beta_l 63.1 52 0.0011 34.1 9.9 121 296-424 33-166 (167)
351 PRK11892 pyruvate dehydrogenas 62.7 14 0.0003 44.7 6.3 109 306-422 190-309 (464)
352 PRK10886 DnaA initiator-associ 62.3 56 0.0012 34.9 10.1 99 10-109 29-148 (196)
353 PTZ00410 NAD-dependent SIR2; P 62.3 13 0.00028 43.1 5.7 42 553-594 200-241 (349)
354 cd01410 SIRT7 SIRT7: Eukaryoti 61.8 7.4 0.00016 41.8 3.4 56 552-609 149-205 (206)
355 COG3957 Phosphoketolase [Carbo 61.5 15 0.00033 45.5 6.3 102 161-289 139-247 (793)
356 PF02779 Transket_pyr: Transke 61.2 31 0.00067 35.9 7.9 111 51-165 53-170 (178)
357 CHL00144 odpB pyruvate dehydro 59.4 40 0.00087 38.9 9.1 121 297-426 41-175 (327)
358 cd02752 MopB_Formate-Dh-Na-lik 58.2 29 0.00062 43.9 8.2 112 486-598 74-213 (649)
359 cd07036 TPP_PYR_E1-PDHc-beta_l 57.2 28 0.0006 36.2 6.6 41 1000-1041 122-163 (167)
360 KOG1182|consensus 56.8 21 0.00046 40.0 5.8 88 931-1045 221-317 (432)
361 smart00861 Transket_pyr Transk 55.8 62 0.0013 33.2 9.0 108 49-163 52-162 (168)
362 PTZ00182 3-methyl-2-oxobutanat 55.7 1.1E+02 0.0023 35.9 11.8 151 4-163 30-201 (355)
363 PRK00414 gmhA phosphoheptose i 55.4 60 0.0013 34.4 9.0 97 10-108 32-149 (192)
364 PRK00414 gmhA phosphoheptose i 54.6 39 0.00085 35.8 7.4 101 267-368 31-151 (192)
365 COG0846 SIR2 NAD-dependent pro 54.3 10 0.00022 41.9 3.0 70 552-623 176-246 (250)
366 cd01411 SIR2H SIR2H: Uncharact 53.6 8.5 0.00018 41.9 2.2 55 553-609 166-220 (225)
367 CHL00144 odpB pyruvate dehydro 52.6 2.5E+02 0.0054 32.5 14.1 148 8-164 3-171 (327)
368 PRK13936 phosphoheptose isomer 51.3 53 0.0011 34.9 7.8 101 268-368 31-151 (197)
369 PRK13936 phosphoheptose isomer 51.2 86 0.0019 33.3 9.4 99 10-108 31-149 (197)
370 cd01407 SIR2-fam SIR2 family o 51.2 14 0.00031 39.9 3.5 55 554-610 163-218 (218)
371 PRK09212 pyruvate dehydrogenas 51.0 1.4E+02 0.0031 34.4 11.8 148 6-164 1-171 (327)
372 PRK11892 pyruvate dehydrogenas 50.8 98 0.0021 37.6 10.8 148 6-163 139-308 (464)
373 KOG1905|consensus 50.7 27 0.00059 39.1 5.4 71 551-623 209-280 (353)
374 COG0541 Ffh Signal recognition 50.5 42 0.0009 39.9 7.2 51 484-534 112-162 (451)
375 TIGR03479 DMSO_red_II_alp DMSO 50.5 56 0.0012 43.2 9.4 114 486-599 142-268 (912)
376 PF13580 SIS_2: SIS domain; PD 50.4 42 0.00091 33.4 6.5 96 10-105 23-138 (138)
377 TIGR01973 NuoG NADH-quinone ox 49.6 44 0.00095 41.9 7.9 111 486-598 289-406 (603)
378 cd08769 DAP_dppA_2 Peptidase M 49.4 4.4 9.5E-05 45.2 -0.8 146 268-413 37-205 (270)
379 cd02766 MopB_3 The MopB_3 CD i 49.3 17 0.00038 44.4 4.2 113 486-598 76-200 (501)
380 PRK05579 bifunctional phosphop 48.5 50 0.0011 39.2 7.8 148 81-239 90-277 (399)
381 PRK09130 NADH dehydrogenase su 48.2 34 0.00073 43.6 6.7 107 486-594 290-404 (687)
382 TIGR00441 gmhA phosphoheptose 46.7 61 0.0013 32.9 7.1 98 271-368 2-119 (154)
383 COG2609 AceE Pyruvate dehydrog 46.4 37 0.0008 42.2 6.1 58 178-236 192-259 (887)
384 COG1609 PurR Transcriptional r 45.5 3.7E+02 0.0081 30.9 14.2 156 198-357 86-264 (333)
385 cd01413 SIR2_Af2 SIR2_Af2: Arc 45.4 20 0.00043 38.9 3.5 55 552-608 165-220 (222)
386 TIGR00441 gmhA phosphoheptose 44.2 1.1E+02 0.0025 30.9 8.6 95 13-107 2-116 (154)
387 cd02773 MopB_Res-Cmplx1_Nad11 44.2 70 0.0015 37.4 8.1 108 486-595 71-186 (375)
388 cd06294 PBP1_ycjW_transcriptio 43.8 3.3E+02 0.0071 29.3 13.0 89 265-353 105-207 (270)
389 PF00766 ETF_alpha: Electron t 43.2 15 0.00032 33.8 1.7 66 501-570 8-75 (86)
390 COG2897 SseA Rhodanese-related 43.1 40 0.00086 38.1 5.5 143 199-353 88-259 (285)
391 cd02772 MopB_NDH-1_NuoG2 MopB_ 42.9 43 0.00094 39.7 6.2 107 486-595 72-192 (414)
392 COG1915 Uncharacterized conser 41.7 28 0.00061 38.9 3.9 92 525-623 301-404 (415)
393 PRK10886 DnaA initiator-associ 41.6 58 0.0013 34.7 6.2 102 267-369 28-150 (196)
394 cd06298 PBP1_CcpA_like Ligand- 41.6 4.4E+02 0.0096 28.2 13.6 87 265-351 99-199 (268)
395 cd08663 DAP_dppA_1 Peptidase M 41.1 7.5 0.00016 43.3 -0.6 145 268-412 37-204 (266)
396 TIGR01591 Fdh-alpha formate de 41.0 57 0.0012 41.4 7.2 111 486-597 71-197 (671)
397 PRK13937 phosphoheptose isomer 40.3 1.3E+02 0.0029 31.6 8.7 99 10-108 26-144 (188)
398 cd00368 Molybdopterin-Binding 39.6 29 0.00063 40.2 4.0 111 486-597 74-198 (374)
399 PRK13937 phosphoheptose isomer 39.5 80 0.0017 33.2 6.9 102 268-369 26-147 (188)
400 TIGR00521 coaBC_dfp phosphopan 39.3 79 0.0017 37.4 7.5 149 81-239 86-275 (390)
401 PRK09129 NADH dehydrogenase su 39.3 74 0.0016 41.2 7.9 109 486-596 290-411 (776)
402 cd00296 SIR2 SIR2 superfamily 38.8 28 0.00061 37.4 3.4 45 554-598 165-210 (222)
403 PRK09212 pyruvate dehydrogenas 38.0 63 0.0014 37.3 6.3 112 305-426 51-175 (327)
404 cd02774 MopB_Res-Cmplx1_Nad11- 37.8 1.2E+02 0.0025 35.7 8.5 108 486-594 72-188 (366)
405 PF00289 CPSase_L_chain: Carba 37.1 41 0.00089 32.4 3.8 100 203-310 4-105 (110)
406 PRK09492 treR trehalose repres 36.9 3.1E+02 0.0067 30.6 11.7 91 265-356 158-259 (315)
407 COG1029 FwdB Formylmethanofura 36.9 1.3E+02 0.0029 34.8 8.2 111 484-595 230-370 (429)
408 cd06311 PBP1_ABC_sugar_binding 35.5 3E+02 0.0066 29.9 11.1 148 266-426 109-272 (274)
409 PRK15488 thiosulfate reductase 34.6 87 0.0019 40.4 7.5 109 486-598 120-241 (759)
410 cd02770 MopB_DmsA-EC This CD ( 34.4 76 0.0017 39.9 6.7 113 486-598 81-212 (617)
411 COG2204 AtoC Response regulato 34.4 3.1E+02 0.0067 33.3 11.3 149 329-535 48-200 (464)
412 PRK12270 kgd alpha-ketoglutara 33.9 1.9E+02 0.0042 37.9 9.8 95 925-1045 646-752 (1228)
413 PRK04020 rps2P 30S ribosomal p 33.7 1.8E+02 0.0039 31.3 8.4 73 488-571 54-127 (204)
414 PLN02683 pyruvate dehydrogenas 33.4 66 0.0014 37.6 5.5 110 304-424 73-196 (356)
415 PRK10444 UMP phosphatase; Prov 33.2 3.2E+02 0.007 30.1 10.7 94 203-306 3-103 (248)
416 PTZ00254 40S ribosomal protein 33.0 1.4E+02 0.003 33.1 7.5 61 500-571 71-131 (249)
417 cd02759 MopB_Acetylene-hydrata 32.5 61 0.0013 39.3 5.3 135 486-622 76-229 (477)
418 COG2247 LytB Putative cell wal 32.5 72 0.0016 36.3 5.3 57 502-569 30-86 (337)
419 TIGR01458 HAD-SF-IIA-hyp3 HAD- 32.4 4.7E+02 0.01 28.8 11.9 61 216-283 27-87 (257)
420 PRK13938 phosphoheptose isomer 32.4 2.8E+02 0.0061 29.5 9.6 98 10-108 33-151 (196)
421 PRK13982 bifunctional SbtC-lik 32.3 1.1E+02 0.0023 37.3 7.1 146 80-234 153-340 (475)
422 cd02767 MopB_ydeP The MopB_yde 32.1 62 0.0013 40.4 5.3 109 486-595 84-203 (574)
423 TIGR01012 Sa_S2_E_A ribosomal 31.9 2.2E+02 0.0048 30.4 8.6 73 488-571 48-121 (196)
424 PF02603 Hpr_kinase_N: HPr Ser 31.0 50 0.0011 32.6 3.4 50 484-536 65-114 (127)
425 PF00448 SRP54: SRP54-type pro 30.9 93 0.002 33.1 5.7 48 486-534 15-63 (196)
426 cd02755 MopB_Thiosulfate-R-lik 30.7 46 0.001 40.1 3.8 110 486-598 77-200 (454)
427 cd05569 PTS_IIB_fructose PTS_I 30.6 1.5E+02 0.0032 27.7 6.4 78 503-594 4-82 (96)
428 cd01537 PBP1_Repressors_Sugar_ 30.4 6.1E+02 0.013 26.6 12.3 87 266-353 102-202 (264)
429 COG0552 FtsY Signal recognitio 30.2 1.5E+02 0.0033 34.2 7.4 77 482-564 149-227 (340)
430 cd06278 PBP1_LacI_like_2 Ligan 30.2 6.9E+02 0.015 26.6 14.1 88 265-352 98-197 (266)
431 cd02771 MopB_NDH-1_NuoG2-N7 Mo 30.0 87 0.0019 37.8 6.1 85 486-571 72-158 (472)
432 COG1454 EutG Alcohol dehydroge 29.4 1.3E+02 0.0028 35.5 6.9 75 487-568 15-96 (377)
433 PLN02683 pyruvate dehydrogenas 29.4 1.7E+02 0.0038 34.1 8.1 36 1005-1041 157-193 (356)
434 PRK09939 putative oxidoreducta 29.4 46 0.001 42.9 3.6 110 486-595 128-248 (759)
435 cd06299 PBP1_LacI_like_13 Liga 28.6 4.9E+02 0.011 27.9 11.2 85 267-352 101-198 (265)
436 cd05006 SIS_GmhA Phosphoheptos 28.3 2E+02 0.0043 29.7 7.6 101 268-368 21-141 (177)
437 cd06333 PBP1_ABC-type_HAAT_lik 27.8 3.2E+02 0.0069 30.5 9.8 146 200-360 64-219 (312)
438 KOG0781|consensus 27.3 1.2E+02 0.0027 36.5 6.2 46 482-527 388-433 (587)
439 TIGR00162 conserved hypothetic 27.3 4.2E+02 0.0091 28.1 9.8 89 9-111 33-124 (188)
440 cd06267 PBP1_LacI_sugar_bindin 27.2 7.5E+02 0.016 26.0 13.7 88 266-353 100-201 (264)
441 TIGR01481 ccpA catabolite cont 27.1 8.5E+02 0.018 27.2 13.3 85 265-350 159-257 (329)
442 TIGR00853 pts-lac PTS system, 26.9 48 0.001 31.0 2.4 60 499-571 3-62 (95)
443 PF09364 XFP_N: XFP N-terminal 25.8 2.1E+02 0.0046 33.3 7.6 27 1001-1027 215-243 (379)
444 PRK13761 hypothetical protein; 25.6 89 0.0019 33.9 4.3 132 483-621 51-207 (248)
445 cd06271 PBP1_AglR_RafR_like Li 25.4 8.4E+02 0.018 26.0 12.6 87 265-351 103-203 (268)
446 cd02753 MopB_Formate-Dh-H Form 24.8 1.7E+02 0.0037 35.7 7.4 136 486-622 72-224 (512)
447 cd06283 PBP1_RegR_EndR_KdgR_li 24.5 8.5E+02 0.019 25.9 12.2 87 265-352 99-201 (267)
448 cd06273 PBP1_GntR_like_1 This 23.9 8.5E+02 0.018 26.0 12.1 129 202-351 57-200 (268)
449 cd02760 MopB_Phenylacetyl-CoA- 23.7 2.3E+02 0.0049 36.8 8.3 83 517-599 126-218 (760)
450 cd05006 SIS_GmhA Phosphoheptos 23.6 5.4E+02 0.012 26.5 9.8 37 72-108 102-139 (177)
451 cd00368 Molybdopterin-Binding 23.6 3.7E+02 0.008 31.0 9.5 84 485-571 229-319 (374)
452 cd02754 MopB_Nitrate-R-NapA-li 23.4 1.4E+02 0.003 37.1 6.2 163 486-654 73-254 (565)
453 PRK00771 signal recognition pa 23.2 2.6E+02 0.0055 33.8 8.1 50 485-534 108-157 (437)
454 cd06287 PBP1_LacI_like_8 Ligan 23.1 8.4E+02 0.018 26.6 11.9 178 217-427 70-264 (269)
455 PRK14071 6-phosphofructokinase 23.1 2.9E+02 0.0062 32.5 8.3 33 269-301 95-127 (360)
456 PRK11302 DNA-binding transcrip 23.0 2E+02 0.0044 31.9 7.0 69 485-565 114-182 (284)
457 PRK13938 phosphoheptose isomer 22.9 2.5E+02 0.0053 30.0 7.1 100 268-368 33-153 (196)
458 COG3958 Transketolase, C-termi 22.8 2.1E+02 0.0046 32.4 6.7 109 309-426 54-168 (312)
459 cd02751 MopB_DMSOR-like The Mo 22.8 77 0.0017 39.8 3.9 113 486-598 79-220 (609)
460 PRK03202 6-phosphofructokinase 22.5 2.9E+02 0.0062 31.9 8.1 34 268-301 80-113 (320)
461 PF13580 SIS_2: SIS domain; PD 22.3 1.7E+02 0.0037 29.0 5.5 97 267-363 22-138 (138)
462 KOG1223|consensus 21.8 19 0.00042 42.8 -1.6 103 314-424 309-417 (508)
463 PF00532 Peripla_BP_1: Peripla 21.7 3.3E+02 0.0072 30.3 8.3 95 265-360 101-211 (279)
464 cd00281 DAP_dppA Peptidase M55 21.7 46 0.00099 37.2 1.4 144 268-412 37-203 (265)
465 TIGR02417 fruct_sucro_rep D-fr 21.6 9.8E+02 0.021 26.7 12.4 91 265-357 161-264 (327)
466 TIGR01701 Fdhalpha-like oxidor 21.2 1.5E+02 0.0032 38.3 6.0 109 486-595 119-238 (743)
467 TIGR01553 formate-DH-alph form 20.9 1.4E+02 0.0031 39.9 5.8 112 486-597 126-263 (1009)
468 COG1701 Uncharacterized protei 20.8 1.3E+02 0.0028 32.3 4.3 135 482-623 52-212 (256)
469 PF13380 CoA_binding_2: CoA bi 20.6 1.3E+02 0.0029 29.0 4.2 42 268-309 66-107 (116)
470 PRK10014 DNA-binding transcrip 20.4 1.2E+03 0.027 26.0 13.8 87 265-351 165-265 (342)
471 cd00763 Bacterial_PFK Phosphof 20.4 3.4E+02 0.0073 31.3 8.0 34 268-301 79-112 (317)
472 cd06277 PBP1_LacI_like_1 Ligan 20.4 8.3E+02 0.018 26.2 11.1 87 265-351 101-199 (268)
473 KOG2684|consensus 20.0 1E+02 0.0022 36.2 3.7 64 556-622 278-341 (412)
474 TIGR01457 HAD-SF-IIA-hyp2 HAD- 20.0 4E+02 0.0087 29.2 8.4 80 216-305 23-103 (249)
No 1
>KOG1185|consensus
Probab=100.00 E-value=1e-94 Score=800.29 Aligned_cols=560 Identities=44% Similarity=0.740 Sum_probs=509.1
Q ss_pred CcccccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccc
Q psy14416 260 SEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGP 339 (1065)
Q Consensus 260 ~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGp 339 (1065)
+++..+.+.+++.+|+.|+++||+++||+-|.++.++..+.+..|||+|.||||++|+|+|++|+|+|||||||+++|||
T Consensus 7 ~~~~~~~~~g~~~vA~~Lk~~gVe~iFgiVGipV~el~~aaqalGIk~I~~RnEqaA~yAA~A~gyLt~kpGV~lVvsGP 86 (571)
T KOG1185|consen 7 KVDKASSRHGGELVAAVLKAQGVEYIFGIVGIPVIELAVAAQALGIKFIGTRNEQAAVYAASAYGYLTGKPGVLLVVSGP 86 (571)
T ss_pred cccccccccHHHHHHHHHHHcCceEEEEEeccchHHHHHHHHHcCCeEeecccHHHHHHHHHHhhhhcCCCeEEEEecCC
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEE
Q psy14416 340 GLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVS 419 (1065)
Q Consensus 340 G~~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV 419 (1065)
|++|+++|++||+.+++|||+|.|..++.+.++|+||++||+.+++++||++.+++++++|+..+++|++.|++++|||+
T Consensus 87 Gl~hal~gv~NA~~n~wPll~IgGsa~~~~~~rGafQe~dQvel~rp~~K~~~r~~~~~~I~~~i~kA~r~a~~G~PG~~ 166 (571)
T KOG1185|consen 87 GLTHALAGVANAQMNCWPLLLIGGSASTLLENRGAFQELDQVELFRPLCKFVARPTSVRDIPPTIRKAVRAAMSGRPGPV 166 (571)
T ss_pred hHHHHHHHhhhhhhccCcEEEEecccchhhhcccccccccHHhhhhhhhhhccCCCChhhccHHHHHHHHHHhcCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecChhhhhhcc-ccccCC-CCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHH
Q psy14416 420 YLDFPANLLAQRI-NQSALV-PTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLIL 497 (1065)
Q Consensus 420 ~L~iP~Dv~~~~~-~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~ 497 (1065)
|+++|.|+..... .+.+.. ..|.. ..+.+..+.|+++++++++++|+
T Consensus 167 yvD~P~d~v~~~~~~e~~~~~~~p~~-------------------------------~~p~P~i~~p~~s~i~~av~llk 215 (571)
T KOG1185|consen 167 YVDLPADVVLPSKMVEKEIDVSEPQP-------------------------------PIPLPPIPGPPPSQIQKAVQLLK 215 (571)
T ss_pred EEecccceeeeecccccccccCCCCC-------------------------------CCCCCCCCCCCHHHHHHHHHHHH
Confidence 9999999544332 222111 00000 01223367789999999999999
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHHHHhhhcCCCEEEEeCCccccccccCC
Q psy14416 498 EAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWILHFGR 577 (1065)
Q Consensus 498 ~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~~~~~g~ 577 (1065)
+||||+||+|.|+..+.+.++|++|.|++|+|++.++|+||++|++||++++.++..++++||+||++|++++|..++|.
T Consensus 216 ~AKrPLlvvGkgAa~~~ae~~l~~~Ve~~glPflptpMgKGll~d~hPl~v~~aRS~ALk~ADvvll~GarlnwiLhfG~ 295 (571)
T KOG1185|consen 216 SAKRPLLVVGKGAAYAPAEDQLRKFVETTGLPFLPTPMGKGLLPDNHPLNVSSARSLALKKADVVLLAGARLNWILHFGL 295 (571)
T ss_pred hcCCcEEEEecccccCccHHHHHHHHHhcCCCcccCcccccCCCCCCchhhhHHHHHHHhhCCEEEEecceeeEEEecCC
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCeEEEecCChhhcccc-cccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchh
Q psy14416 578 APRFKSNVKIIQVDLNAEELHNS-VQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVI 656 (1065)
Q Consensus 578 ~~~~~~~~~iI~Vd~d~~~~~~~-~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 656 (1065)
+++|.++.++||||.+++.++.+ ..+++.|++|+..++.+|.+.+.. .+|......+|.+.+++..+++++..++..
T Consensus 296 ~Pk~~kd~KfIqvd~n~Eel~~n~~k~~v~i~gDig~~~~~L~e~l~~--~~~~~~~s~~w~k~Lrek~~~ne~~~~~~~ 373 (571)
T KOG1185|consen 296 PPKWSKDVKFIQVDINPEELGNNFVKPDVAIQGDIGLFVLQLVEELQD--QPWTWGPSTDWVKELREKDKQNEAAVEEKA 373 (571)
T ss_pred CCccCCCceEEEEeCCHHHHhcccCCCCceeeecHHHHHHHHHHHhcC--CCcccCCchhHHHHHHHHHHhhHHHHHHHh
Confidence 99999999999999999999987 789999999999999999999973 234445556999999999999888877652
Q ss_pred hhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCC-CcEEEEECCCCcC
Q psy14416 657 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLP-VILVIVNNNGIYG 735 (1065)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP-~d~ilv~d~G~~~ 735 (1065)
. ..+.|+ | ++.+++ .|.+.|| .|.|+|+|+++
T Consensus 374 -------------------~-------~~~~pL-----N---~~~~~~-----------~vre~L~~~d~ilVsEGan-- 406 (571)
T KOG1185|consen 374 -------------------A-------KKSTPL-----N---YYQVLQ-----------TVRELLPNDDTILVSEGAN-- 406 (571)
T ss_pred -------------------h-------ccCCCC-----c---HHHHHH-----------HHHHhcCCCCcEEEecCCc--
Confidence 1 456788 9 999999 9999999 89999999944
Q ss_pred cccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccc
Q psy14416 736 GFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVE 815 (1065)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 815 (1065)
| |.+| |++++...| +.|.|.||
T Consensus 407 ---------------------------------------t----mdig--r~~l~~~~P-------r~rLDaGt------ 428 (571)
T KOG1185|consen 407 ---------------------------------------T----MDIG--RTLLPPRGP-------RRRLDAGT------ 428 (571)
T ss_pred ---------------------------------------c----hhhh--hhhccCCCc-------ccccCCcc------
Confidence 4 6666 777888888 99999999
Q ss_pred ccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEE
Q psy14416 816 SGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVIL 895 (1065)
Q Consensus 816 ~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 895 (1065)
+|+| |+++||++ ||+++. |+++
T Consensus 429 --------------------fgTM----------------------------GVG~Gfal--aaa~~~--------P~~~ 450 (571)
T KOG1185|consen 429 --------------------FGTM----------------------------GVGLGFAL--AAALAA--------PDRK 450 (571)
T ss_pred --------------------cccc----------------------------ccchhHHH--HHHhhC--------CCCe
Confidence 6677 99999999 999999 9999
Q ss_pred EEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCC
Q psy14416 896 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 975 (1065)
Q Consensus 896 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~ 975 (1065)
|+ +|-||++| +|+.||+.|+ +|++||+++||+|||||| |+
T Consensus 451 V~---------------------------------~veGDsaF-GfSaME~ET~-----vR~~Lpvv~vV~NN~Giy-g~ 490 (571)
T KOG1185|consen 451 VV---------------------------------CVEGDSAF-GFSAMELETF-----VRYKLPVVIVVGNNNGIY-GL 490 (571)
T ss_pred EE---------------------------------EEecCccc-CcchhhHHHH-----HHhcCCeEEEEecCCccc-cc
Confidence 99 99999999 9999999999 999999999999999999 88
Q ss_pred chhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCcch
Q psy14416 976 DEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKPQN 1055 (1065)
Q Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~ 1055 (1065)
+...++++. ++..+...|++++.++.||+++|++||.+|+.|+|++||+.+++++.+.+++|+||||.|+|.+.||++.
T Consensus 491 d~~~~~~I~-e~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~t~~el~~~l~~a~q~~~~psvINVlI~p~~~rk~~~ 569 (571)
T KOG1185|consen 491 DDDGWKQIS-EQDPTLDLPPTALLANTRYDKVAKAFGGKGYFVSTVEELLAALQQACQDTDKPSVINVLIGPTAFRKGQI 569 (571)
T ss_pred CcccHHHHh-hcCcccCCCcccccccccHHHHHHHcCCCceeeCCHHHHHHHHHHHHhcCCCCeEEEEEecccccccccc
Confidence 888899988 7777888899999999999999999999999999999999999999999789999999999999999864
Q ss_pred h
Q psy14416 1056 F 1056 (1065)
Q Consensus 1056 ~ 1056 (1065)
|
T Consensus 570 ~ 570 (571)
T KOG1185|consen 570 F 570 (571)
T ss_pred c
Confidence 4
No 2
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.2e-83 Score=769.75 Aligned_cols=529 Identities=28% Similarity=0.439 Sum_probs=443.6
Q ss_pred ccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccccc
Q psy14416 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 346 (1065)
Q Consensus 267 ~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~ 346 (1065)
+++++.+++.|+++||++|||+||..++++++++.+.+||+|.+|||++|+|||+||||+|||||||++|+|||++|+++
T Consensus 2 ~~ga~~lv~~L~~~GV~~VFGiPG~~i~~~~dal~~~~i~~I~~RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~~t 81 (550)
T COG0028 2 MTGAEALVEALEANGVDTVFGIPGGSILPLYDALYDSGIRHILVRHEQGAAFAADGYARATGKPGVCLVTSGPGATNLLT 81 (550)
T ss_pred CcHHHHHHHHHHHcCCcEEEeCCCccHHHHHHHHHhCCCcEEEeccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHH
Confidence 68999999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred ccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 347 GMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 347 av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
||++|+.|++|||+|||+.++.+++++++|++||.+++++++||++++.+++++++.+++||+.|.++|||||||+||.|
T Consensus 82 gla~A~~d~~Pll~itGqv~~~~~g~~afQe~D~~~l~~p~tk~~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~D 161 (550)
T COG0028 82 GLADAYMDSVPLLAITGQVPTSLIGTDAFQEVDQVGLFRPITKYNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKD 161 (550)
T ss_pred HHHHHHhcCCCEEEEeCCccccccCcchhhhcchhhHhhhhheeEEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCH-HHHHHHHHHHHhCCCcEEE
Q psy14416 427 LLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGI-AELKQASRLILEAKAPLVI 505 (1065)
Q Consensus 427 v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~v~~~ae~L~~AkrPvIl 505 (1065)
++.++.+..... +. ......+.+.. +++++++++|++||||+|+
T Consensus 162 v~~~~~~~~~~~--~~---------------------------------~~~~~~p~~~~~~~i~~aa~~L~~AkrPvIl 206 (550)
T COG0028 162 VLAAEAEEPGPE--PA---------------------------------ILPPYRPAPPPPEAIRKAAELLAEAKRPVIL 206 (550)
T ss_pred Hhhccccccccc--cc---------------------------------ccccCCCCCCcHHHHHHHHHHHHhCCCCEEE
Confidence 999886543210 00 00111112222 8999999999999999999
Q ss_pred EccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccCCC
Q psy14416 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFGRA 578 (1065)
Q Consensus 506 vG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g~~ 578 (1065)
+|.|+..+++.+++++|+|++++||++|+++||.+|++||+++|. ..+.++++||+||.+|++++++.+. +.
T Consensus 207 ~G~G~~~a~a~~~l~~lae~~~~Pv~~t~~gkg~~p~~hp~~lG~~g~~g~~~a~~~~~~aDlll~vG~rf~~~~~~-~~ 285 (550)
T COG0028 207 AGGGVRRAGASEELRELAEKLGAPVVTTLMGKGAVPEDHPLSLGMLGMHGTKAANEALEEADLLLAVGARFDDRVTG-YS 285 (550)
T ss_pred ECCCccccccHHHHHHHHHHHCCCEEEccCcCccCCCCCccccccccccccHHHHHHhhcCCEEEEecCCCcccccc-hh
Confidence 999999999899999999999999999999999999999999883 3567888999999999999987665 32
Q ss_pred ccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhh
Q psy14416 579 PRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILV 658 (1065)
Q Consensus 579 ~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~ 658 (1065)
.|.++..+||||+|+.++++.+++++.|++|+..+|++|.+.++. ....|.++..+..+++.....+..
T Consensus 286 -~f~~~~~ii~iDidp~ei~k~~~~~~~i~gD~~~~l~~L~~~l~~--------~~~~~~~~~~~~~~~~~~~~~~~~-- 354 (550)
T COG0028 286 -GFAPPAAIIHIDIDPAEIGKNYPVDVPIVGDAKATLEALLEELKP--------ERAAWLEELLEARAAYRDLALEEL-- 354 (550)
T ss_pred -hhCCcCCEEEEeCChHHhCCCCCCCeeEeccHHHHHHHHHHhhhh--------cchHHHHHHHHHHHhhhhhhhhcc--
Confidence 233332399999999999999999999999999999999998862 146788877776655544433220
Q ss_pred hhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCccc
Q psy14416 659 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 738 (1065)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~~ 738 (1065)
..... + +..++. .|.+.+|+|.+++.|.|++..|.
T Consensus 355 --------------------------~~~~~-----~---p~~v~~-----------~l~~~~~~daiv~~d~G~~~~w~ 389 (550)
T COG0028 355 --------------------------ADDGI-----K---PQYVIK-----------VLRELLPDDAIVVTDVGQHQMWA 389 (550)
T ss_pred --------------------------CCCcc-----C---HHHHHH-----------HHHHhCCCCeEEEeCCcHHHHHH
Confidence 01111 3 667888 99999999999999999988887
Q ss_pred ccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccccc
Q psy14416 739 ETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGE 818 (1065)
Q Consensus 739 ~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 818 (1065)
.+++.. ..| +.++.
T Consensus 390 a~~~~~-----------------------------------------------~~p-------~~~~~------------ 403 (550)
T COG0028 390 ARYFDF-----------------------------------------------YRP-------RRFLT------------ 403 (550)
T ss_pred HHhccc-----------------------------------------------CCC-------CcEEc------------
Confidence 655432 111 12222
Q ss_pred eeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEEE
Q psy14416 819 VTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 898 (1065)
Q Consensus 819 ~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 898 (1065)
||-.|+| |+++|+++ ||+++. |+++|+
T Consensus 404 --------------s~~~GtM----------------------------G~glPaAI--GAkla~--------P~r~Vv- 430 (550)
T COG0028 404 --------------SGGLGTM----------------------------GFGLPAAI--GAKLAA--------PDRKVV- 430 (550)
T ss_pred --------------CCCCccc----------------------------cchHHHHH--HHHhhC--------CCCcEE-
Confidence 3335666 99999999 999999 999999
Q ss_pred ccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchh
Q psy14416 899 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEA 978 (1065)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~ 978 (1065)
+++|||+| +|+.|||+|+ +|+++|+++||+||++ |+.+...
T Consensus 431 --------------------------------~i~GDG~F-~m~~qEL~Ta-----~r~~lpv~ivv~nN~~-~g~v~~~ 471 (550)
T COG0028 431 --------------------------------AIAGDGGF-MMNGQELETA-----VRYGLPVKIVVLNNGG-YGMVRQW 471 (550)
T ss_pred --------------------------------EEEcccHH-hccHHHHHHH-----HHhCCCEEEEEEECCc-cccchHH
Confidence 99999999 9999999999 9999999999999976 6666554
Q ss_pred hHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCc
Q psy14416 979 TYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKP 1053 (1065)
Q Consensus 979 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~ 1053 (1065)
.. . ...+. .....+.+.. |.|+|++||++++++++.+||+++|++++++ ++|+||||.||++....|
T Consensus 472 q~-~-~~~~~----~~~~~~~~~~-f~klAea~G~~g~~v~~~~el~~al~~al~~-~~p~lidv~id~~~~~~p 538 (550)
T COG0028 472 QE-L-FYGGR----YSGTDLGNPD-FVKLAEAYGAKGIRVETPEELEEALEEALAS-DGPVLIDVVVDPEEAVPP 538 (550)
T ss_pred HH-H-hcCCC----cceeecCCcc-HHHHHHHcCCeeEEeCCHHHHHHHHHHHHhC-CCCEEEEEEecCcccCCC
Confidence 22 1 11111 1112222333 9999999999999999999999999999997 999999999999944333
No 3
>PRK05858 hypothetical protein; Provisional
Probab=100.00 E-value=3.4e-78 Score=731.78 Aligned_cols=531 Identities=26% Similarity=0.444 Sum_probs=440.3
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
..++++++|++.|+++||+++||+||+++.++++++.+.+|++|.|+||++|+|||+||+|+||+|+||++|+|||++|+
T Consensus 3 ~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~i~~i~~rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~n~ 82 (542)
T PRK05858 3 QTGHAGRLAARRLKAHGVDTMFTLSGGHLFPLYDGAREEGIRLIDVRHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVTNG 82 (542)
T ss_pred ccCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCCEEeeccHHHHHHHHHHHHHhcCCCeEEEEcCCchHHHH
Confidence 35789999999999999999999999999999999987789999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecC
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP 424 (1065)
++|+++|+.+++|||+|+|+.+....+++.+|++||.++|+++|||+.++++++++++.+++|++.|.++|+|||||+||
T Consensus 83 ~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 162 (542)
T PRK05858 83 MSAMAAAQFNQSPLVVLGGRAPALRWGMGSLQEIDHVPFVAPVTKFAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFP 162 (542)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcccCCCCCCcccchhhhhhhhhceEEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEE
Q psy14416 425 ANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLV 504 (1065)
Q Consensus 425 ~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvI 504 (1065)
.|++.++.+....+ ... ........++++.+++++++|.+||||+|
T Consensus 163 ~dv~~~~~~~~~~~---~~~-------------------------------~~~~~~~~~~~~~i~~~~~~L~~AkrPvi 208 (542)
T PRK05858 163 MDHAFSMADDDGRP---GAL-------------------------------TELPAGPTPDPDALARAAGLLAEAQRPVI 208 (542)
T ss_pred hhhhhccccccccc---ccc-------------------------------ccCCCCCCCCHHHHHHHHHHHHhCCCcEE
Confidence 99998876532111 000 00111234678899999999999999999
Q ss_pred EEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHHHHhhhcCCCEEEEeCCccccccccCCCccccCC
Q psy14416 505 IIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWILHFGRAPRFKSN 584 (1065)
Q Consensus 505 lvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~~~~~g~~~~~~~~ 584 (1065)
++|.+++.+++.+++++|||++|+||++|+++||.+|++||++++....++++++|+||.+|+++++....++ +.++
T Consensus 209 l~G~g~~~~~a~~~l~~lae~lg~pV~tt~~~kg~~~~~hpl~~~~~~~~~l~~aD~vl~vG~~~~~~~~~~~---~~~~ 285 (542)
T PRK05858 209 MAGTDVWWGHAEAALLRLAEELGIPVLMNGMGRGVVPADHPLAFSRARGKALGEADVVLVVGVPMDFRLGFGV---FGGT 285 (542)
T ss_pred EECCCccccChHHHHHHHHHHhCCCEEEcCCcCCCCCCCCchhhhHHHHHHHHhCCEEEEECCCCcccccccc---cCCC
Confidence 9999998778889999999999999999999999999999999998888899999999999999876543333 3345
Q ss_pred CeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhhhhccCC
Q psy14416 585 VKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILVIVNNNG 664 (1065)
Q Consensus 585 ~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1065)
.++||||.|+..+++.+..++.+.+|+.++|++|.+.+..+ .....|.+.+++..+.+.....+..
T Consensus 286 ~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-------- 351 (542)
T PRK05858 286 AQLVHVDDAPPQRAHHRPVAAGLYGDLSAILSALAGAGGDR------TDHQGWIEELRTAETAARARDAAEL-------- 351 (542)
T ss_pred CEEEEECCCHHHhcCCCCCceEEeCCHHHHHHHHHHhcccc------cCcHHHHHHHHHHHHhhhhhhhhhc--------
Confidence 78999999999999999999999999999999999877521 1234677776655443322221110
Q ss_pred ccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCcccccchhh
Q psy14416 665 IYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYAS 744 (1065)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~~~~~~~~ 744 (1065)
. ....|+ + +..+++ .|.+.+|++.+++.|.|++..|...++..
T Consensus 352 ----------~--------~~~~~l-----~---~~~~~~-----------~l~~~l~~~~ivv~d~g~~~~~~~~~~~~ 394 (542)
T PRK05858 352 ----------A--------DDRDPI-----H---PMRVYG-----------ELAPLLDRDAIVIGDGGDFVSYAGRYIDP 394 (542)
T ss_pred ----------c--------CCCCCc-----C---HHHHHH-----------HHHHhcCCCeEEEECCcHHHHHHHHHccc
Confidence 0 112345 6 677888 99999999999999998766554322210
Q ss_pred hccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccccceeeccc
Q psy14416 745 IVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLP 824 (1065)
Q Consensus 745 ~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 824 (1065)
..| +.
T Consensus 395 -----------------------------------------------~~p-------~~--------------------- 399 (542)
T PRK05858 395 -----------------------------------------------YRP-------GC--------------------- 399 (542)
T ss_pred -----------------------------------------------cCC-------CC---------------------
Confidence 011 00
Q ss_pred eEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEEEccCccc
Q psy14416 825 VILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIY 904 (1065)
Q Consensus 825 ~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 904 (1065)
+.++|.+|+| |+++|+++ ||+++. |+++||
T Consensus 400 -----~~~~~~~gsm----------------------------G~~lp~ai--Ga~la~--------p~r~vv------- 429 (542)
T PRK05858 400 -----WLDPGPFGCL----------------------------GTGPGYAL--AARLAR--------PSRQVV------- 429 (542)
T ss_pred -----EEeCCCcccc----------------------------ccchhHHH--HHHHhC--------CCCcEE-------
Confidence 1123445666 99999998 999998 999999
Q ss_pred CCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHh
Q psy14416 905 GGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIV 984 (1065)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~ 984 (1065)
+++|||+| +|+.++++|+ +|+++|+++||+||++ |+.... .+...+
T Consensus 430 --------------------------~i~GDG~f-~~~~~eL~Ta-----~~~~lpi~ivV~NN~~-y~~~~~-~~~~~~ 475 (542)
T PRK05858 430 --------------------------LLQGDGAF-GFSLMDVDTL-----VRHNLPVVSVIGNNGI-WGLEKH-PMEALY 475 (542)
T ss_pred --------------------------EEEcCchh-cCcHHHHHHH-----HHcCCCEEEEEEeCCc-hhhHHH-HHHHhc
Confidence 99999999 9999999999 9999999999999976 554322 122211
Q ss_pred hcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCC
Q psy14416 985 ESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSA 1049 (1065)
Q Consensus 985 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~ 1049 (1065)
+. .......+++||.++|++||+++.+|+|.+||+++|+++++. ++|+||||.+++++
T Consensus 476 --~~----~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~-~~p~lIev~~~~~~ 533 (542)
T PRK05858 476 --GY----DVAADLRPGTRYDEVVRALGGHGELVTVPAELGPALERAFAS-GVPYLVNVLTDPSV 533 (542)
T ss_pred --CC----ccccccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhC-CCcEEEEEEECCCc
Confidence 11 111234478999999999999999999999999999999987 89999999999885
No 4
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=100.00 E-value=2.6e-78 Score=734.45 Aligned_cols=524 Identities=23% Similarity=0.308 Sum_probs=431.9
Q ss_pred ccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccccc
Q psy14416 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 346 (1065)
Q Consensus 267 ~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~ 346 (1065)
|+++++|++.|+++||++|||+||+++.+|++++.+.+|++|.|+||++|+|||+||+|+||+|+||++|+|||++|+++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~v~~~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~~ 80 (548)
T PRK08978 1 MNGAQWVVHALRAQGVDTVFGYPGGAIMPVYDALYDGGVEHLLCRHEQGAAMAAIGYARATGKVGVCIATSGPGATNLIT 80 (548)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHH
Confidence 47899999999999999999999999999999998778999999999999999999999999999999999999999999
Q ss_pred ccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 347 GMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 347 av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
|+++|+.+++|||+|+|+++.+..+++++|++||..+|+++|||++++++++++++.+++|++.|.+++||||||+||.|
T Consensus 81 ~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (548)
T PRK08978 81 GLADALLDSVPVVAITGQVSSPLIGTDAFQEIDVLGLSLACTKHSFLVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKD 160 (548)
T ss_pred HHHHHhhcCCCEEEEecCCCccccCCCCCcccchhccccCceeeEEEECCHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEEEE
Q psy14416 427 LLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVII 506 (1065)
Q Consensus 427 v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvIlv 506 (1065)
++.++++.+. . . ........++++.+++++++|++||||+|++
T Consensus 161 v~~~~~~~~~-~---~---------------------------------~~~~~~~~~~~~~l~~~~~~L~~AkrPvIl~ 203 (548)
T PRK08978 161 IQLAEGELEP-H---L---------------------------------TTVENEPAFPAAELEQARALLAQAKKPVLYV 203 (548)
T ss_pred hhhccccccc-c---c---------------------------------cccCCCCCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 9877754211 0 0 0011123467888999999999999999999
Q ss_pred ccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccCCCc
Q psy14416 507 GKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFGRAP 579 (1065)
Q Consensus 507 G~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g~~~ 579 (1065)
|.++...++.+++++|||++|+||++|+++||.+|++||+++|. ....++++||+||.+|+++++..+. +..
T Consensus 204 G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~~~~hp~~~G~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~-~~~ 282 (548)
T PRK08978 204 GGGVGMAGAVPALREFLAATGMPAVATLKGLGAVEADHPYYLGMLGMHGTKAANLAVQECDLLIAVGARFDDRVTG-KLN 282 (548)
T ss_pred CCCccccchHHHHHHHHHHHCCCEEEccccCCCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEEcCCCCccccC-Ccc
Confidence 99998788889999999999999999999999999999999973 3556788999999999999875443 333
Q ss_pred cccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhhh
Q psy14416 580 RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILVI 659 (1065)
Q Consensus 580 ~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 659 (1065)
.+.++.++||||.|+..+++.+..++.|++|++.+|++|.+.++ ...|.++++..++.......
T Consensus 283 ~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~l~~~~~----------~~~~~~~~~~~~~~~~~~~~------ 346 (548)
T PRK08978 283 TFAPHAKVIHLDIDPAEINKLRQAHVALQGDLNALLPALQQPLN----------IDAWRQHCAQLRAEHAWRYD------ 346 (548)
T ss_pred ccCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhcc----------chHHHHHHHHHHHhCchhcc------
Confidence 35566789999999999999999999999999999999987653 24577766554332211110
Q ss_pred hccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCcccc
Q psy14416 660 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 739 (1065)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~~~ 739 (1065)
....++ + +..+++ .|.+.+|++.+++.|.|++..|..
T Consensus 347 ------------------------~~~~~~-----~---~~~~~~-----------~l~~~~~~~~iiv~d~g~~~~~~~ 383 (548)
T PRK08978 347 ------------------------HPGEAI-----Y---APALLK-----------QLSDRKPADTVVTTDVGQHQMWVA 383 (548)
T ss_pred ------------------------CCCCCc-----C---HHHHHH-----------HHHHhCCCCcEEEecCcHHHHHHH
Confidence 011245 6 667888 999999999999999987555533
Q ss_pred cchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccccce
Q psy14416 740 TTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEV 819 (1065)
Q Consensus 740 ~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 819 (1065)
.++.. ..| +.++
T Consensus 384 ~~~~~-----------------------------------------------~~~-------~~~~-------------- 395 (548)
T PRK08978 384 QHMRF-----------------------------------------------TRP-------ENFI-------------- 395 (548)
T ss_pred Hhccc-----------------------------------------------CCC-------CeEE--------------
Confidence 22110 000 0000
Q ss_pred eeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEEEc
Q psy14416 820 TTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVN 899 (1065)
Q Consensus 820 ~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~ 899 (1065)
+++-+|+| |+++++++ ||+++. |+++|+
T Consensus 396 ------------~~~~~g~m----------------------------G~glpaAi--Ga~la~--------p~~~vv-- 423 (548)
T PRK08978 396 ------------TSSGLGTM----------------------------GFGLPAAI--GAQVAR--------PDDTVI-- 423 (548)
T ss_pred ------------eCCchhhh----------------------------hchHHHHH--HHHHhC--------CCCcEE--
Confidence 12224555 99999998 999998 999999
Q ss_pred cCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhh
Q psy14416 900 NNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEAT 979 (1065)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~ 979 (1065)
+++|||+| +|+.++|+|+ +++++|+++||+||+| |+.+...+
T Consensus 424 -------------------------------~i~GDG~f-~~~~~eL~ta-----~~~~l~v~ivV~NN~~-~~~~~~~~ 465 (548)
T PRK08978 424 -------------------------------CVSGDGSF-MMNVQELGTI-----KRKQLPVKIVLLDNQR-LGMVRQWQ 465 (548)
T ss_pred -------------------------------EEEccchh-hccHHHHHHH-----HHhCCCeEEEEEeCCc-cHHHHHHH
Confidence 99999999 9999999999 9999999999999988 44332221
Q ss_pred HhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 980 YASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 980 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
.....+. ...+.+.+++||.++|++||+++++|++.+||+++|+++++. ++|+||||.++++++..
T Consensus 466 --~~~~~~~----~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~-~~p~lIeV~id~~~~~~ 531 (548)
T PRK08978 466 --QLFFDER----YSETDLSDNPDFVMLASAFGIPGQTITRKDQVEAALDTLLNS-EGPYLLHVSIDELENVW 531 (548)
T ss_pred --HHHhCCc----ceecCCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhC-CCCEEEEEEecCccccc
Confidence 1111111 111333467999999999999999999999999999999986 89999999999887643
No 5
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=5.8e-78 Score=733.71 Aligned_cols=543 Identities=22% Similarity=0.341 Sum_probs=435.7
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
+.++++++|++.|+++||+||||+||+.+.++++++.+ .+|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus 2 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n 81 (572)
T PRK08979 2 EMLSGASMIVRSLIDEGVKHIFGYPGGSVLDIYDALHEKSGIEHILVRHEQAAVHMADGYARATGKVGVVLVTSGPGATN 81 (572)
T ss_pred CcccHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHhhcCCCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEECCCchHhH
Confidence 34689999999999999999999999999999999965 57999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
+++||++|+.+++|||+|+|+.+....+.+++|++||.++|+++|||+.++++++++++.+++|++.|+++++|||||+|
T Consensus 82 ~l~gia~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~i 161 (572)
T PRK08979 82 TITGIATAYMDSIPMVVLSGQVPSNLIGNDAFQECDMIGISRPVVKHSFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDL 161 (572)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCCCCcccchhHHhhhceeEEEecCCHHHHHHHHHHHHHHHhCCCCCcEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++.++++.....+.+... ....+...++++.+++++++|++||||+
T Consensus 162 P~Dv~~~~~~~~~~~~~~~~~-------------------------------~~~~p~~~~~~~~i~~~~~~L~~A~rPv 210 (572)
T PRK08979 162 PKDCLNPAILHPYEYPESIKM-------------------------------RSYNPTTSGHKGQIKRGLQALLAAKKPV 210 (572)
T ss_pred CHhHhhhhhcccccCCccccc-------------------------------ccCCCCCCCCHHHHHHHHHHHHhCCCCE
Confidence 999988776431100000000 0001112346788999999999999999
Q ss_pred EEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccC
Q psy14416 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFG 576 (1065)
Q Consensus 504 IlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g 576 (1065)
|++|.++.++++.++|++|+|++|+||++|+++||.+|++||+++|. ..++++++||+||.+|+++++..+..
T Consensus 211 il~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hp~~~G~~G~~~~~~~~~~~~~aD~vl~vG~~~~~~~~~~ 290 (572)
T PRK08979 211 LYVGGGAIISGADKQILQLAEKLNLPVVSTLMGLGAFPGTHKNSLGMLGMHGRYEANMAMHNADLIFGIGVRFDDRTTNN 290 (572)
T ss_pred EEECCCccccChHHHHHHHHHHhCCCEEEcccccccCCCCCcccccCCccCCCHHHHHHHHhCCEEEEEcCCCCccccCc
Confidence 99999998888889999999999999999999999999999999883 45678899999999999998765544
Q ss_pred CCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchh
Q psy14416 577 RAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVI 656 (1065)
Q Consensus 577 ~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 656 (1065)
+. .+.++.++||||.|+..+++++..++.|++|++.+|++|.+.+..+...........|.++++.......... .
T Consensus 291 ~~-~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~- 366 (572)
T PRK08979 291 LE-KYCPNATILHIDIDPSSISKTVRVDIPIVGSADKVLDSMLALLDESGETNDEAAIASWWNEIEVWRSRNCLAY--D- 366 (572)
T ss_pred hh-hcCCCCeEEEEECCHHHhCCccCCceEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhCchhc--c-
Confidence 42 2456678999999999999999999999999999999999877532111011112356665543322111000 0
Q ss_pred hhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCc
Q psy14416 657 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 736 (1065)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~ 736 (1065)
....++ + +..+++ .|.+.+|+|.+++.|+|++..
T Consensus 367 ---------------------------~~~~~i-----~---~~~~~~-----------~l~~~l~~d~ivv~d~G~~~~ 400 (572)
T PRK08979 367 ---------------------------KSSERI-----K---PQQVIE-----------TLYKLTNGDAYVASDVGQHQM 400 (572)
T ss_pred ---------------------------CCCCCc-----C---HHHHHH-----------HHHHhcCCCeEEEECCcHHHH
Confidence 011245 6 677888 999999999999999998666
Q ss_pred ccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccc
Q psy14416 737 FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVES 816 (1065)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 816 (1065)
|..+++.. ..| +.++
T Consensus 401 ~~~~~~~~-----------------------------------------------~~~-------~~~~----------- 415 (572)
T PRK08979 401 FAALYYPF-----------------------------------------------DKP-------RRWI----------- 415 (572)
T ss_pred HHHHhcCc-----------------------------------------------CCC-------CeEE-----------
Confidence 65433221 000 0011
Q ss_pred cceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEE
Q psy14416 817 GEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 896 (1065)
Q Consensus 817 ~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v 896 (1065)
++|.+|+| |+++|+++ ||+++. |+++|
T Consensus 416 ---------------~~~~~g~m----------------------------G~glpaai--Ga~la~--------p~~~v 442 (572)
T PRK08979 416 ---------------NSGGLGTM----------------------------GFGLPAAM--GVKFAM--------PDETV 442 (572)
T ss_pred ---------------ccCCcccc----------------------------cchhhHHH--hhhhhC--------CCCeE
Confidence 13335555 99999999 999998 99999
Q ss_pred EEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCc
Q psy14416 897 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 976 (1065)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~ 976 (1065)
| +++|||+| +|+.+||+|+ +|+++|+++||+||+| |+.+.
T Consensus 443 v---------------------------------~i~GDG~f-~m~~~EL~Ta-----~r~~lpv~~vV~NN~~-y~~i~ 482 (572)
T PRK08979 443 V---------------------------------CVTGDGSI-QMNIQELSTA-----LQYDIPVKIINLNNRF-LGMVK 482 (572)
T ss_pred E---------------------------------EEEcchHh-hccHHHHHHH-----HHcCCCeEEEEEeCCc-cHHHH
Confidence 9 99999999 9999999999 9999999999999987 44333
Q ss_pred hhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 977 EATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
.. ......+... .....+.+||.++|++||+++++|++.+||+++|+++++..++|.||||.+++++...
T Consensus 483 ~~--q~~~~~~~~~----~~~~~~~~d~~~~A~a~G~~~~~v~~~~eL~~al~~a~~~~~~p~lIev~i~~~~~~~ 552 (572)
T PRK08979 483 QW--QDMIYQGRHS----HSYMDSVPDFAKIAEAYGHVGIRISDPDELESGLEKALAMKDRLVFVDINVDETEHVY 552 (572)
T ss_pred HH--HHHHhCCccc----ccCCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhcCCCcEEEEEEeCCccccC
Confidence 21 1111122111 1112235799999999999999999999999999999974489999999999877543
No 6
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=100.00 E-value=4.9e-78 Score=735.08 Aligned_cols=540 Identities=19% Similarity=0.250 Sum_probs=434.4
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHh-CCCeEEEEeccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLT-KKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~t-gkpgv~~~tsGpG~~N 343 (1065)
.++++++|++.|+++||+|+||+||..+.+|++++.+ .+|++|.|+||++|+|||+||+|+| |+|+||++|+|||++|
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~V~~rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N 81 (588)
T TIGR01504 2 RMRAVDAAVYVLEKEGITTAFGVPGAAINPFYSALKAHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD 81 (588)
T ss_pred CccHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHhhcCCCcEEeeCCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHH
Confidence 4689999999999999999999999999999999965 4799999999999999999999999 9999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
+++||++|+.+++|||+|+|+.+....+++.+|++||.++|+++|||+.++.+++++.+.|++|++.|+++|||||||+|
T Consensus 82 ~~~gla~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~D~~~~~~~vtk~~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~i 161 (588)
T TIGR01504 82 MITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIAAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLIDL 161 (588)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCCcccccCHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEe
Confidence 99999999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++.++++..... .. ......+.++++.+++++++|++||||+
T Consensus 162 P~Dv~~~~~~~~~~~---~~--------------------------------~~~~~~~~~~~~~i~~~~~~L~~AkrPv 206 (588)
T TIGR01504 162 PFDVQVAEIEFDPDT---YE--------------------------------PLPVYKPAATRAQIEKAVEMLNAAERPL 206 (588)
T ss_pred CcchhhcccCCcccc---cc--------------------------------cccCCCCCCCHHHHHHHHHHHHhCCCcE
Confidence 999988776421100 00 0011122357889999999999999999
Q ss_pred EEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH--------HHHhhhcCCCEEEEeCCcccccccc
Q psy14416 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLGARLNWILHF 575 (1065)
Q Consensus 504 IlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~--------~~~~al~~aDlVI~iG~~~~~~~~~ 575 (1065)
||+|.++.++++.++|++|+|++|+||++|+++||++|++||+++|. ...+++++||+||.+|+++++..+.
T Consensus 207 Il~G~g~~~~~a~~~l~~lae~~g~PV~tt~~gkg~~p~~hpl~~G~~g~~~~~~~a~~~l~~aD~iL~lG~~l~~~~t~ 286 (588)
T TIGR01504 207 IVAGGGVINADAADLLQEFAELTGVPVIPTLMGWGCIPDDHELMAGMVGLQTSHRYGNATLLESDFVFGIGNRWANRHTG 286 (588)
T ss_pred EEECCCcchhhhHHHHHHHHHHhCCCeEEcCccCCCCCCCChhhCcCCCCCCCcHHHHHHHHhCCEEEEECCCCCccccC
Confidence 99999999888999999999999999999999999999999999872 3456789999999999999876554
Q ss_pred CCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccch
Q psy14416 576 GRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPV 655 (1065)
Q Consensus 576 g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 655 (1065)
++. .+.++.++||||.|+..+++++..++.|++|+..+|++|.+.+...........+..|.+.+.+.+....+.. .
T Consensus 287 ~~~-~~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 363 (588)
T TIGR01504 287 SVD-VYTEGRKFVHVDIEPTQIGRVFAPDLGIVSDAKAALKLLVEVAQELKKAGRLPDRSEWAADCQQRKRTLLRKT--H 363 (588)
T ss_pred ccc-ccCCCCeEEEeeCCHHHhcCcCCCCeEEEeCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhCcccc--c
Confidence 442 2456678999999999999999999999999999999998876421100001123456655544322211110 0
Q ss_pred hhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcC
Q psy14416 656 ILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG 735 (1065)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~ 735 (1065)
.+..++ + +..+++ .|.+.||+|.+|+.|+|++.
T Consensus 364 ----------------------------~~~~~l-----~---p~~~~~-----------~l~~~l~~d~ivv~D~G~~~ 396 (588)
T TIGR01504 364 ----------------------------FDNVPV-----K---PQRVYE-----------EMNKAFGRDVCYVTTIGLSQ 396 (588)
T ss_pred ----------------------------CCCCCc-----C---HHHHHH-----------HHHHhCCCCCEEEECCcHHH
Confidence 112245 6 778888 99999999999999999876
Q ss_pred cccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccc
Q psy14416 736 GFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVE 815 (1065)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 815 (1065)
.|..+++.. ..| +.++.
T Consensus 397 ~~~~~~~~~-----------------------------------------------~~p-------~~~~~--------- 413 (588)
T TIGR01504 397 IAGAQMLHV-----------------------------------------------YKP-------RHWIN--------- 413 (588)
T ss_pred HHHHHhccc-----------------------------------------------cCC-------CcEEe---------
Confidence 665433221 011 01111
Q ss_pred ccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEE
Q psy14416 816 SGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVIL 895 (1065)
Q Consensus 816 ~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 895 (1065)
+|-+|+| |+++|+++ ||+++. |+++
T Consensus 414 -----------------~~~~gsm----------------------------G~glpaai--Ga~lA~--------pdr~ 438 (588)
T TIGR01504 414 -----------------CGQAGPL----------------------------GWTIPAAL--GVCAAD--------PKRN 438 (588)
T ss_pred -----------------CCccccc----------------------------cchHhHHH--hhhhhC--------CCCc
Confidence 2224444 99999999 999998 9999
Q ss_pred EEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCC
Q psy14416 896 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 975 (1065)
Q Consensus 896 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~ 975 (1065)
|+ +++|||+| +|+.+||+|+ +|+++|+++||+||+| |+..
T Consensus 439 Vv---------------------------------~i~GDG~f-~m~~~EL~Ta-----~r~~lpvv~iV~NN~~-yg~i 478 (588)
T TIGR01504 439 VV---------------------------------ALSGDYDF-QFMIEELAVG-----AQHNIPYIHVLVNNAY-LGLI 478 (588)
T ss_pred EE---------------------------------EEEcchHh-hccHHHHHHH-----HHhCCCeEEEEEeCCc-hHHH
Confidence 99 99999999 9999999999 9999999999999987 4432
Q ss_pred chhhHhHHhhcCCc------ccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHh---cCCCCEEEEEEeC
Q psy14416 976 DEATYASIVESGEV------TTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQ---TTTRPSLINILIN 1046 (1065)
Q Consensus 976 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~---~~~~~~li~~~~~ 1046 (1065)
.... ... .+.. ....+.....+++||.++|++||+++.+|++.+||+++|+++++ ..++|.||||.++
T Consensus 479 ~~~q--~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~a~~~~~~~~~p~lIeV~i~ 555 (588)
T TIGR01504 479 RQAQ--RAF-DMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVFKPEEIAPAFEQAKALMAEHRVPVVVEVILE 555 (588)
T ss_pred HHHH--HHh-cccccceeeccccccccccCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhhcccCCCcEEEEEEec
Confidence 2211 110 0110 00011122234699999999999999999999999999999995 2389999999999
Q ss_pred CCCCC
Q psy14416 1047 PSADR 1051 (1065)
Q Consensus 1047 ~~~~~ 1051 (1065)
+++..
T Consensus 556 ~~~~~ 560 (588)
T TIGR01504 556 RVTNI 560 (588)
T ss_pred cccCC
Confidence 88873
No 7
>PRK11269 glyoxylate carboligase; Provisional
Probab=100.00 E-value=5e-78 Score=736.96 Aligned_cols=544 Identities=20% Similarity=0.248 Sum_probs=436.3
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHHh-CCCeEEEEecccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLT-KKPGVCLVVSGPGLL 342 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~t-gkpgv~~~tsGpG~~ 342 (1065)
.+++++++|++.|+++||+|+||+||+++.+|+++++++ +|++|.||||++|+|||+||+|+| |+|+||++|+|||++
T Consensus 2 ~~~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~ 81 (591)
T PRK11269 2 AKMRAVDAAVLVLEKEGVTTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGT 81 (591)
T ss_pred CcccHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhhcCCCcEEeeCCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHH
Confidence 357899999999999999999999999999999999764 799999999999999999999999 999999999999999
Q ss_pred ccccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEe
Q psy14416 343 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLD 422 (1065)
Q Consensus 343 N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~ 422 (1065)
|+++|+++|+.+++|||+|+|+++....+++.+|++||..+|+++|||+.++.+++++++.+++|++.|+++|+|||||+
T Consensus 82 N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~itk~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~ 161 (591)
T PRK11269 82 DMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIESIAKPVTKWAVTVREPALVPRVFQQAFHLMRSGRPGPVLID 161 (591)
T ss_pred HHHHHHHHHhhcCCCEEEEecCCCccccCCCcccccChhhHhhcceeEEEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCc
Q psy14416 423 FPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAP 502 (1065)
Q Consensus 423 iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrP 502 (1065)
||.|++.++++..... +. ......+.++++.+++++++|++||||
T Consensus 162 iP~Dv~~~~~~~~~~~--~~---------------------------------~~~~~~~~~~~~~i~~~~~~L~~AkrP 206 (591)
T PRK11269 162 LPFDVQVAEIEFDPDT--YE---------------------------------PLPVYKPAATRAQIEKALEMLNAAERP 206 (591)
T ss_pred eChhhhhccccccccc--cc---------------------------------ccccCCCCCCHHHHHHHHHHHHhCCCc
Confidence 9999988775421100 00 001112346788899999999999999
Q ss_pred EEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH--------HHHhhhcCCCEEEEeCCccccccc
Q psy14416 503 LVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLGARLNWILH 574 (1065)
Q Consensus 503 vIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~--------~~~~al~~aDlVI~iG~~~~~~~~ 574 (1065)
+||+|.++.++++.+++++|+|++|+||++|+++||++|++||+++|. ...+++++||+||.+|+++.+..+
T Consensus 207 vil~G~g~~~~~a~~~l~~lae~~g~PV~tt~~gkg~~p~~hpl~~G~~g~~~~~~~~~~~~~~aDlvl~lG~~~~~~~~ 286 (591)
T PRK11269 207 LIVAGGGVINADASDLLVEFAELTGVPVIPTLMGWGAIPDDHPLMAGMVGLQTSHRYGNATLLASDFVLGIGNRWANRHT 286 (591)
T ss_pred EEEECCCCcccCHHHHHHHHHHHhCCCeEecccccCcCCCCChhhccCCcCCCCcHHHHHHHHhCCEEEEeCCCCCcccc
Confidence 999999998888899999999999999999999999999999999872 235678899999999999988665
Q ss_pred cCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccc
Q psy14416 575 FGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLP 654 (1065)
Q Consensus 575 ~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 654 (1065)
.++. .+.++.++||||.|+..+++.+..++.+++|+..+|++|.+.+++.........+..|.+.++...+......+
T Consensus 287 ~~~~-~~~~~~~~i~Vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 364 (591)
T PRK11269 287 GSVE-VYTKGRKFVHVDIEPTQIGRVFGPDLGIVSDAKAALELLVEVAREWKAAGRLPDRSAWVADCQERKRTLLRKTH- 364 (591)
T ss_pred Cchh-hcCCCCeEEEeeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhchhhcc-
Confidence 4432 24556789999999999999999999999999999999998775211000012235677666554332211100
Q ss_pred hhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCc
Q psy14416 655 VILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIY 734 (1065)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~ 734 (1065)
....|+ + +..+++ .|.+.+|++++++.|.|++
T Consensus 365 -----------------------------~~~~~l-----~---~~~~~~-----------~l~~~l~~d~ivv~d~g~~ 396 (591)
T PRK11269 365 -----------------------------FDNVPI-----K---PQRVYE-----------EMNKAFGRDTCYVSTIGLS 396 (591)
T ss_pred -----------------------------CCCCCc-----C---HHHHHH-----------HHHHhcCCCcEEEECCcHH
Confidence 012245 6 777888 9999999999999999876
Q ss_pred CcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccc
Q psy14416 735 GGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIV 814 (1065)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 814 (1065)
..|...++.. ..| +.++
T Consensus 397 ~~~~~~~~~~-----------------------------------------------~~p-------~~~~--------- 413 (591)
T PRK11269 397 QIAAAQFLHV-----------------------------------------------YKP-------RHWI--------- 413 (591)
T ss_pred HHHHHHhccc-----------------------------------------------CCC-------CcEE---------
Confidence 5553322210 001 1111
Q ss_pred cccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccE
Q psy14416 815 ESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVI 894 (1065)
Q Consensus 815 ~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~ 894 (1065)
|+|-+|+| |+++++++ ||+++. |++
T Consensus 414 -----------------~~~~~G~m----------------------------G~glpaAi--Ga~la~--------p~r 438 (591)
T PRK11269 414 -----------------NCGQAGPL----------------------------GWTIPAAL--GVRAAD--------PDR 438 (591)
T ss_pred -----------------eCCccccc----------------------------cchhhhHH--hhhhhC--------CCC
Confidence 23335555 99999999 999998 999
Q ss_pred EEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCC
Q psy14416 895 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 974 (1065)
Q Consensus 895 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~ 974 (1065)
+|| +++|||+| +|+.++|+|+ +|+++|+++||+||+| |+.
T Consensus 439 ~Vv---------------------------------~i~GDG~f-~m~~~eL~Ta-----~~~~lpv~~vV~NN~~-~g~ 478 (591)
T PRK11269 439 NVV---------------------------------ALSGDYDF-QFLIEELAVG-----AQFNLPYIHVLVNNAY-LGL 478 (591)
T ss_pred cEE---------------------------------EEEccchh-hcCHHHHHHH-----HHhCCCeEEEEEeCCc-hhH
Confidence 999 99999999 9999999999 9999999999999987 443
Q ss_pred CchhhHhHHhhcCCc-ccC---CCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHh---cCCCCEEEEEEeCC
Q psy14416 975 FDEATYASIVESGEV-TTV---SPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQ---TTTRPSLINILINP 1047 (1065)
Q Consensus 975 ~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~---~~~~~~li~~~~~~ 1047 (1065)
+.... ....+.... ..+ ..+....+++||.++|++||+++++|+|.+||+++|+++++ ..++|.||||.+++
T Consensus 479 i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~~~~gp~lieV~v~~ 557 (591)
T PRK11269 479 IRQAQ-RAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVFKPEDIAPALEQAKALMAEFRVPVVVEVILER 557 (591)
T ss_pred HHHHH-HHhccCccceeeccccccccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 32211 110000000 000 11122346799999999999999999999999999999985 23899999999998
Q ss_pred CCCCC
Q psy14416 1048 SADRK 1052 (1065)
Q Consensus 1048 ~~~~~ 1052 (1065)
++..+
T Consensus 558 ~~~~~ 562 (591)
T PRK11269 558 VTNIS 562 (591)
T ss_pred ccCCC
Confidence 87543
No 8
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=1.4e-77 Score=731.01 Aligned_cols=543 Identities=22% Similarity=0.347 Sum_probs=435.2
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
+.++++++|++.|+++||++|||+||+.+.++++++.+ ++|++|.+|||++|+|||+||+|+||||+||++|+|||++|
T Consensus 2 ~~~~~a~~l~~~L~~~Gv~~vFgvpG~~~~~l~d~l~~~~~i~~i~~rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n 81 (574)
T PRK07979 2 EMLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLARATGEVGVVLVTSGPGATN 81 (574)
T ss_pred CcccHHHHHHHHHHHcCCCEEEEccCcchHHHHHHHHhcCCceEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCccHhh
Confidence 45789999999999999999999999999999999976 58999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
+++||++|+.+++|||+|+|+.+....+.+.+|++||..+++++|||+.++++++++.+.+++|++.|.++++|||||+|
T Consensus 82 ~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~i 161 (574)
T PRK07979 82 AITGIATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDL 161 (574)
T ss_pred hHHHHHHHhhcCCCEEEEECCCChhccCCCCCceecHHHHhhcccceEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++.++++.....+.+... ........++++.+++++++|++||||+
T Consensus 162 P~Dv~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~i~~a~~~L~~A~rPv 210 (574)
T PRK07979 162 PKDILNPANKLPYVWPESVSM-------------------------------RSYNPTTQGHKGQIKRALQTLVAAKKPV 210 (574)
T ss_pred ChhhhhhhhccccccCccccc-------------------------------ccCCCCCCCCHHHHHHHHHHHHcCCCCE
Confidence 999987654321000000000 0001122356888999999999999999
Q ss_pred EEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccC
Q psy14416 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFG 576 (1065)
Q Consensus 504 IlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g 576 (1065)
|++|.++.++++.++|++|+|++|+||++|+++||.+|++||+++|. ..++++++||+||.+|+++++..+..
T Consensus 211 i~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~p~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~vG~~~~~~~~~~ 290 (574)
T PRK07979 211 VYVGGGAINAACHQQLKELVEKLNLPVVSSLMGLGAFPATHRQSLGMLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNN 290 (574)
T ss_pred EEECCCccccchHHHHHHHHHHhCCCEEEccccCCCCCCCCcccccCCcCCCCHHHHHHHHhCCEEEEeCCCCcccccCC
Confidence 99999998888899999999999999999999999999999999873 45678899999999999998766544
Q ss_pred CCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchh
Q psy14416 577 RAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVI 656 (1065)
Q Consensus 577 ~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 656 (1065)
+. .+.++.++||||.|+..+++.+..++.|++|+..+|++|.+.+..............|.+.++..... .....
T Consensus 291 ~~-~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 365 (574)
T PRK07979 291 LA-KYCPNATVLHIDIDPTSISKTVTADIPIVGDARQVLEQMLELLSQESAHQPLDEIRDWWQQIEQWRAR----QCLKY 365 (574)
T ss_pred hh-hcCCCCeEEEEECCHHHhCCcccCCeEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHh----Chhhc
Confidence 42 24556789999999999999999999999999999999998775311111111224565544433221 10000
Q ss_pred hhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCc
Q psy14416 657 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 736 (1065)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~ 736 (1065)
. ....++ + +..+++ .|.+.+|+|.+++.|+|++..
T Consensus 366 ------------------~--------~~~~~i-----~---~~~~~~-----------~l~~~l~~d~ivv~d~G~~~~ 400 (574)
T PRK07979 366 ------------------D--------THSEKI-----K---PQAVIE-----------TLWRLTKGDAYVTSDVGQHQM 400 (574)
T ss_pred ------------------c--------CCCCCc-----C---HHHHHH-----------HHHhhcCCCEEEEeCCcHHHH
Confidence 0 011245 6 677888 999999999999999998766
Q ss_pred ccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccc
Q psy14416 737 FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVES 816 (1065)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 816 (1065)
|..+++.. ..| ..++
T Consensus 401 ~~~~~~~~-----------------------------------------------~~p-------~~~~----------- 415 (574)
T PRK07979 401 FAALYYPF-----------------------------------------------DKP-------RRWI----------- 415 (574)
T ss_pred HHHHhccc-----------------------------------------------CCC-------CeEE-----------
Confidence 65433221 001 0011
Q ss_pred cceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEE
Q psy14416 817 GEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 896 (1065)
Q Consensus 817 ~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v 896 (1065)
++|-+|+| |+++|+++ ||+++. |+++|
T Consensus 416 ---------------~~~~~g~m----------------------------G~glpaai--Ga~la~--------p~~~v 442 (574)
T PRK07979 416 ---------------NSGGLGTM----------------------------GFGLPAAL--GVKMAL--------PEETV 442 (574)
T ss_pred ---------------eCCCccch----------------------------hhHHHHHH--HHHHhC--------CCCeE
Confidence 13335555 99999999 999998 99999
Q ss_pred EEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCc
Q psy14416 897 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 976 (1065)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~ 976 (1065)
| +++|||+| +|+.++|+|+ +|+++|+++||+||+| |+.+.
T Consensus 443 v---------------------------------~i~GDG~f-~m~~~eL~Ta-----~r~~l~v~ivV~NN~~-yg~i~ 482 (574)
T PRK07979 443 V---------------------------------CVTGDGSI-QMNIQELSTA-----LQYELPVLVLNLNNRY-LGMVK 482 (574)
T ss_pred E---------------------------------EEEcchhh-hccHHHHHHH-----HHhCCCeEEEEEeCch-hhHHH
Confidence 9 99999999 9999999999 9999999999999987 55433
Q ss_pred hhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhc--CCCCEEEEEEeCCCCCCC
Q psy14416 977 EATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQT--TTRPSLINILINPSADRK 1052 (1065)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~--~~~~~li~~~~~~~~~~~ 1052 (1065)
... .....+.. ......+++||.++|++||+++++|+|.+||+++|+++++. .++|.||||.++++++..
T Consensus 483 ~~q--~~~~~~~~----~~~~~~~~~d~~~iA~a~G~~g~~v~~~~eL~~al~~a~~~~~~~~p~lIeV~i~~~~~~~ 554 (574)
T PRK07979 483 QWQ--DMIYSGRH----SQSYMQSLPDFVRLAEAYGHVGIQISHPDELESKLSEALEQVRNNRLVFVDVTVDGSEHVY 554 (574)
T ss_pred HHH--HHhcCCcc----ccccCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhccCCCCcEEEEEEECCccCcC
Confidence 221 11111111 11112245799999999999999999999999999999874 389999999999877543
No 9
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=2.9e-77 Score=728.25 Aligned_cols=546 Identities=23% Similarity=0.314 Sum_probs=433.5
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
+.++++++|++.|+++||+++||+||+.+.+|++++.+ .+|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus 2 ~~~~~a~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N 81 (574)
T PRK06466 2 ELLSGAEMLVRALRDEGVEYIYGYPGGAVLHIYDALFKQDKVEHILVRHEQAATHMADGYARATGKTGVVLVTSGPGATN 81 (574)
T ss_pred CcccHHHHHHHHHHHcCCCEEEECCCcchhHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCccHHH
Confidence 34689999999999999999999999999999999965 58999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
+++||++|+.+++|||+|+|+.+..+.+++++|++||..+|+++|||+.++.+++++.+.+++|++.|+++|||||||+|
T Consensus 82 ~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~itk~s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~i 161 (574)
T PRK06466 82 AITGIATAYMDSIPMVVLSGQVPSTLIGEDAFQETDMVGISRPIVKHSFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDI 161 (574)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCccccCCCcccccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++.+..+.....+.+... ........++.+.+++++++|.+||||+
T Consensus 162 P~Dv~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~i~~~~~~L~~A~rPv 210 (574)
T PRK06466 162 PKDMTNPAEKFEYEYPKKVKL-------------------------------RSYSPAVRGHSGQIRKAVEMLLAAKRPV 210 (574)
T ss_pred CHhHhhhhhccccccCccccc-------------------------------ccCCCCCCCCHHHHHHHHHHHHhCCCCE
Confidence 999975432211000000000 0001112346778999999999999999
Q ss_pred EEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCccccc-------HHHHhhhcCCCEEEEeCCccccccccC
Q psy14416 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVS-------AARTHALQNADLVLLLGARLNWILHFG 576 (1065)
Q Consensus 504 IlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg-------~~~~~al~~aDlVI~iG~~~~~~~~~g 576 (1065)
|++|.++.++++.++|++|+|++|+||++|+++||.+|++||+++| ....+++++||+||.+|+++++..+.+
T Consensus 211 il~G~g~~~~~a~~~l~~lae~~g~pv~tt~~~kg~~~~~hp~~~G~~G~~~~~~~~~~l~~aD~il~vG~~~~~~~~~~ 290 (574)
T PRK06466 211 IYSGGGVVLGNASALLTELAHLLNLPVTNTLMGLGGFPGTDRQFLGMLGMHGTYEANMAMHHADVILAVGARFDDRVTNG 290 (574)
T ss_pred EEECCCccccChHHHHHHHHHHhCCCEEEcCccCCCCCCCChhhcCCCccccCHHHHHHHHhCCEEEEECCCCCccccCc
Confidence 9999999888888999999999999999999999999999999987 245567899999999999998866544
Q ss_pred CCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchh
Q psy14416 577 RAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVI 656 (1065)
Q Consensus 577 ~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 656 (1065)
+. .+.++.++||||.|+..+++.+..++.+.+|+..+|++|.+.++............+|.+.++...........+.
T Consensus 291 ~~-~~~~~~~vi~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 368 (574)
T PRK06466 291 PA-KFCPNAKIIHIDIDPASISKTIKADIPIVGPVESVLTEMLAILKEIGEKPDKEALAAWWKQIDEWRGRHGLFPYDK- 368 (574)
T ss_pred hh-hcCCCCeEEEEECCHHHhCCccCCCeEEecCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhCcchhccc-
Confidence 43 2455678999999999999999999999999999999998877521110001122356555543332211000000
Q ss_pred hhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCc
Q psy14416 657 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 736 (1065)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~ 736 (1065)
.+..++ + +..+++ .|.+.+|+|.+++.|.|++..
T Consensus 369 ---------------------------~~~~~l-----~---~~~~~~-----------~l~~~l~~~~iv~~d~g~~~~ 402 (574)
T PRK06466 369 ---------------------------GDGGII-----K---PQQVVE-----------TLYEVTNGDAYVTSDVGQHQM 402 (574)
T ss_pred ---------------------------CCCCCc-----C---HHHHHH-----------HHHhhCCCCeEEEECCcHHHH
Confidence 012245 6 677888 999999999999999988666
Q ss_pred ccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccc
Q psy14416 737 FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVES 816 (1065)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 816 (1065)
|..+++.. ..| +.++
T Consensus 403 ~~~~~~~~-----------------------------------------------~~p-------~~~~----------- 417 (574)
T PRK06466 403 FAAQYYKF-----------------------------------------------NKP-------NRWI----------- 417 (574)
T ss_pred HHHHhccc-----------------------------------------------cCC-------CcEE-----------
Confidence 64432221 011 1111
Q ss_pred cceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEE
Q psy14416 817 GEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 896 (1065)
Q Consensus 817 ~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v 896 (1065)
++|-+|+| |+++|+++ ||+++. |+++|
T Consensus 418 ---------------~~~~~gsm----------------------------G~glpaAi--Ga~la~--------p~r~V 444 (574)
T PRK06466 418 ---------------NSGGLGTM----------------------------GFGLPAAM--GVKLAF--------PDQDV 444 (574)
T ss_pred ---------------cCCCcchh----------------------------hchHHHHH--HHHHhC--------CCCeE
Confidence 23335555 99999999 999998 99999
Q ss_pred EEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCc
Q psy14416 897 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 976 (1065)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~ 976 (1065)
| +++|||+| +|+.++|+|+ +|+++|+++||+||+| |+.+.
T Consensus 445 v---------------------------------~i~GDG~f-~m~~~eL~Ta-----~r~~lpv~ivV~NN~~-y~~i~ 484 (574)
T PRK06466 445 A---------------------------------CVTGEGSI-QMNIQELSTC-----LQYGLPVKIINLNNGA-LGMVR 484 (574)
T ss_pred E---------------------------------EEEcchhh-hccHHHHHHH-----HHhCCCeEEEEEeCCc-cHHHH
Confidence 9 99999999 9999999999 9999999999999988 44333
Q ss_pred hhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCc
Q psy14416 977 EATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKP 1053 (1065)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~ 1053 (1065)
.. ......+.. +.....+.+||.++|++||+++++++|.+||+++|+++++..++|+||||.+++++...+
T Consensus 485 ~~--q~~~~~~~~----~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~p~lIev~i~~~~~~~~ 555 (574)
T PRK06466 485 QW--QDMQYEGRH----SHSYMESLPDFVKLAEAYGHVGIRITDLKDLKPKLEEAFAMKDRLVFIDIYVDRSEHVYP 555 (574)
T ss_pred HH--HHHhcCCce----eecCCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhcCCCcEEEEEEeCCccccCC
Confidence 21 111111211 111122458999999999999999999999999999998733899999999998775543
No 10
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=100.00 E-value=3.2e-77 Score=725.46 Aligned_cols=547 Identities=35% Similarity=0.584 Sum_probs=442.4
Q ss_pred ccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccccc
Q psy14416 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 346 (1065)
Q Consensus 267 ~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~ 346 (1065)
++++++|++.|+++||++|||+||..+.++.+++.+.+|++|.||||++|+|||+||+|+||+|+||++|+|||++|+++
T Consensus 3 ~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~~~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~ 82 (554)
T TIGR03254 3 TDGFHLVIDALKLNGINTIYGVVGIPVTDLARLAQAKGMRYIGFRHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNGLT 82 (554)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchhHHHHHHhhcCCcEEEeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhHHH
Confidence 57899999999999999999999999999988887778999999999999999999999999999999999999999999
Q ss_pred ccccccccCcceEeecCCCccCC--CCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecC
Q psy14416 347 GMANAQINCWPMLVIGGSCAQDH--EGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424 (1065)
Q Consensus 347 av~eA~~~~vPLlvItg~~p~~~--~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP 424 (1065)
||++|+.+++|||+|+|+.+... .+++.+|++||.++|+++|||++++++++++++.+++|++.|+++|||||||+||
T Consensus 83 gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP 162 (554)
T TIGR03254 83 ALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAKAAYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLP 162 (554)
T ss_pred HHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhheeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 99999999999999999999874 3678899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEE
Q psy14416 425 ANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLV 504 (1065)
Q Consensus 425 ~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvI 504 (1065)
.|++.++++..... .+. |+ .........++.+.+++++++|++||||+|
T Consensus 163 ~Dv~~~~~~~~~~~-~~~-------~~-----------------------~~~~~~~~~~~~~~~~~~~~~L~~AkrPvi 211 (554)
T TIGR03254 163 AAVLGQTMEAEKAK-KTL-------VK-----------------------VVDPAPKQLPSPDSVDRAVELLKDAKRPLI 211 (554)
T ss_pred HHHhhccccccccc-ccc-------cc-----------------------ccCCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 99998887532110 000 00 000111234678899999999999999999
Q ss_pred EEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHHHHhhhcCCCEEEEeCCccccccccCCCccccCC
Q psy14416 505 IIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWILHFGRAPRFKSN 584 (1065)
Q Consensus 505 lvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~~~~~g~~~~~~~~ 584 (1065)
++|.++.++++.+++++|+|++|+||++|+++||.+|++||+++|....+++++||+||.+|+++++..+.++...|.++
T Consensus 212 ~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~p~~hp~~~g~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~ 291 (554)
T TIGR03254 212 LLGKGAAYAQADEEIREFVEKTGIPFLPMSMAKGLLPDTHPQSAAAARSFALAEADVVMLVGARLNWLLSHGKGKLWGED 291 (554)
T ss_pred EECCCccccChHHHHHHHHHHHCCCEEEcCCcceeCCCCCchhhhHHHHHHHhcCCEEEEECCCCchhhccCchhhcCCC
Confidence 99999988888999999999999999999999999999999999988888899999999999999887666554445567
Q ss_pred CeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhhhhccCC
Q psy14416 585 VKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILVIVNNNG 664 (1065)
Q Consensus 585 ~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1065)
+++||||.|+..++..++.+..|.+|++.+|++|.+.++... ......|.+++...++.......+..
T Consensus 292 ~~vI~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 359 (554)
T TIGR03254 292 AKFIQVDIEPTEMDSNRPIAAPVVGDIGSVVQALLSAAKNGG----VKPPADWRNAIKTKSEKNVAKMAERL-------- 359 (554)
T ss_pred CcEEEcCCCHHHhCCCcCCceEEecCHHHHHHHHHHHhhhcc----ccchHHHHHHHHHHHHhchhhhhhhc--------
Confidence 789999999999999999999999999999999999885210 11235677666544333221111110
Q ss_pred ccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCC--cEEEEECCCCcCcccccch
Q psy14416 665 IYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPV--ILVIVNNNGIYGGFDETTY 742 (1065)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~--d~ilv~d~G~~~~~~~~~~ 742 (1065)
. ....|+ + +..+++ .|.+.+|+ +.+++.|+|++..|...++
T Consensus 360 ----------~--------~~~~~l-----~---~~~~~~-----------~l~~~l~~~~~~ivv~d~~~~~~~~~~~~ 402 (554)
T TIGR03254 360 ----------S--------ASESPM-----N---YHGALE-----------AIRDVLKDNPDIYLVNEGANTLDLARNVI 402 (554)
T ss_pred ----------c--------cCCCCc-----C---HHHHHH-----------HHHHhcCCCCCEEEEeCCchHHHHHHHhc
Confidence 0 012356 6 777888 99999974 7888888876544433211
Q ss_pred hhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccccceeec
Q psy14416 743 ASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTV 822 (1065)
Q Consensus 743 ~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 822 (1065)
. ...| +.++
T Consensus 403 ~-----------------------------------------------~~~p-------~~~~----------------- 411 (554)
T TIGR03254 403 D-----------------------------------------------MYKP-------RHRL----------------- 411 (554)
T ss_pred c-----------------------------------------------cCCC-------CcEe-----------------
Confidence 1 0111 0111
Q ss_pred cceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEEEccCc
Q psy14416 823 LPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNG 902 (1065)
Q Consensus 823 ~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 902 (1065)
++|.+|+| |+++|+++ ||+++ ++++|+
T Consensus 412 ---------~~~~~gsm----------------------------G~~lpaai--Gaala---------~~~~vv----- 438 (554)
T TIGR03254 412 ---------DVGTWGVM----------------------------GIGMGYAI--AAAVE---------TGKPVV----- 438 (554)
T ss_pred ---------eCCCCCcC----------------------------CchHHHHH--HHHhc---------CCCcEE-----
Confidence 23335555 99999999 88886 357899
Q ss_pred ccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhH
Q psy14416 903 IYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYAS 982 (1065)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~ 982 (1065)
+++|||+| +|+.|||+|+ +|+++|+++||+||+|++....
T Consensus 439 ----------------------------~i~GDGsf-~m~~~EL~Ta-----~r~~l~v~~vV~NN~~~~~~~~------ 478 (554)
T TIGR03254 439 ----------------------------ALEGDSAF-GFSGMEVETI-----CRYNLPVCVVIFNNGGIYRGDD------ 478 (554)
T ss_pred ----------------------------EEEcCchh-cccHHHHHHH-----HHcCCCEEEEEEeChhhhhhhh------
Confidence 99999999 9999999999 9999999999999998522110
Q ss_pred HhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCcchhhhhHh
Q psy14416 983 IVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKPQNFSWLTN 1061 (1065)
Q Consensus 983 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~ 1061 (1065)
....+. ........+++||.++|++||+++++|++.+||+++++++++. ++|+||||.+++++..+..+..||+.
T Consensus 479 ~~~~~~---~~~~~~~~~~~df~~la~a~G~~~~~v~~~~el~~al~~a~~~-~~p~lIev~id~~~~~~~~~~~~~~~ 553 (554)
T TIGR03254 479 VNVVGA---DPAPTVLVHGARYDKMMKAFGGVGYNVTTPDELKAALNEALAS-GKPTLINAVIDPSAGTESGHIGNLNP 553 (554)
T ss_pred hhhcCC---CCCccccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhC-CCCEEEEEEECCCcCCccccccccCC
Confidence 000110 1122333467999999999999999999999999999999976 89999999999999999877788863
No 11
>PRK08322 acetolactate synthase; Reviewed
Probab=100.00 E-value=3.3e-77 Score=725.23 Aligned_cols=527 Identities=24% Similarity=0.365 Sum_probs=429.9
Q ss_pred ccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccccc
Q psy14416 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 346 (1065)
Q Consensus 267 ~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~ 346 (1065)
|+++++|++.|+++||+++||+||+++.+|++++.+.+|++|.++||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus 1 m~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~~ 80 (547)
T PRK08322 1 MKAADLFVKCLENEGVEYIFGIPGEENLDLLEALRDSSIKLILTRHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLVT 80 (547)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCcEEEeccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHHH
Confidence 57899999999999999999999999999999997788999999999999999999999999999999999999999999
Q ss_pred ccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 347 GMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 347 av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
||++|+.+++|||+|+|+++....+++.+|++||.++|+++|||+.++.+++++++.+++|++.|.++|+|||||+||.|
T Consensus 81 ~i~~A~~~~~Pll~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (547)
T PRK08322 81 GVAYAQLGGMPMVAITGQKPIKRSKQGSFQIVDVVAMMAPLTKWTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPED 160 (547)
T ss_pred HHHHHhhcCCCEEEEeccccccccCCCccccccHHHHhhhheeEEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEEEE
Q psy14416 427 LLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVII 506 (1065)
Q Consensus 427 v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvIlv 506 (1065)
++.++.+..... ........++.+.+++++++|++||||+|++
T Consensus 161 v~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~i~~~~~~l~~A~rPviv~ 203 (547)
T PRK08322 161 IAAEETDGKPLP-------------------------------------RSYSRRPYASPKAIERAAEAIQAAKNPLILI 203 (547)
T ss_pred hhhCcccccccc-------------------------------------ccCCCCCCCCHHHHHHHHHHHHhCCCcEEEE
Confidence 987654321110 0011123466788999999999999999999
Q ss_pred ccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccCCCc
Q psy14416 507 GKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFGRAP 579 (1065)
Q Consensus 507 G~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g~~~ 579 (1065)
|.++.++++.+++.+|||++++||++|+++||.+|++||+++|. ..+.++++||+||.+|+++.++....|.
T Consensus 204 G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlil~lG~~l~~~~~~~~~- 282 (547)
T PRK08322 204 GAGANRKTASKALTEFVDKTGIPFFTTQMGKGVIPETHPLSLGTAGLSQGDYVHCAIEHADLIINVGHDVIEKPPFFMN- 282 (547)
T ss_pred CCCcchhcHHHHHHHHHHHhCCCEEEccccCCcCCCCCchhccCCCCCCCHHHHHHHHhCCEEEEECCCCccccccccC-
Confidence 99998778899999999999999999999999999999999883 3467789999999999999876655543
Q ss_pred cccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhhh
Q psy14416 580 RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILVI 659 (1065)
Q Consensus 580 ~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 659 (1065)
+.++.++||||.|+..+++.+..++.+++|++.+|++|.+.++.. ..| ..+|...+++.... ...+.
T Consensus 283 -~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~-~~~----~~~~~~~~~~~~~~---~~~~~---- 349 (547)
T PRK08322 283 -PNGDKKVIHINFLPAEVDPVYFPQVEVVGDIANSLWQLKERLADQ-PHW----DFPRFLKIREAIEA---HLEEG---- 349 (547)
T ss_pred -CCCCCeEEEEeCCHHHcCCCcCCCeEEecCHHHHHHHHHHhcccc-ccc----cHHHHHHHHHHHHH---hhhhc----
Confidence 234578999999999999988899999999999999998877521 001 12344433322211 11100
Q ss_pred hccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCcccc
Q psy14416 660 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 739 (1065)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~~~ 739 (1065)
.. ....|+ + +..+++ .|.+.+|++.+++.|.|++..|..
T Consensus 350 ---------------~~-------~~~~~l-----~---~~~~~~-----------~l~~~l~~~~ii~~d~G~~~~~~~ 388 (547)
T PRK08322 350 ---------------AD-------DDRFPM-----K---PQRIVA-----------DLRKVMPDDDIVILDNGAYKIWFA 388 (547)
T ss_pred ---------------cc-------CCCCCc-----C---HHHHHH-----------HHHHHCCCCeEEEECCcHHHHHHH
Confidence 00 011245 6 667888 999999999999999998766644
Q ss_pred cchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccccce
Q psy14416 740 TTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEV 819 (1065)
Q Consensus 740 ~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 819 (1065)
+++.. ..| ..++.
T Consensus 389 ~~~~~-----------------------------------------------~~~-------~~~~~------------- 401 (547)
T PRK08322 389 RNYRA-----------------------------------------------YEP-------NTCLL------------- 401 (547)
T ss_pred Hhccc-----------------------------------------------CCC-------CCEEc-------------
Confidence 33211 000 00000
Q ss_pred eeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEEEc
Q psy14416 820 TTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVN 899 (1065)
Q Consensus 820 ~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~ 899 (1065)
++-+|+ ||+++|+++ ||+++. |+++|+
T Consensus 402 -------------~~~~g~----------------------------mG~~lpaai--Ga~la~--------p~~~vv-- 428 (547)
T PRK08322 402 -------------DNALAT----------------------------MGAGLPSAI--AAKLVH--------PDRKVL-- 428 (547)
T ss_pred -------------CCCccc----------------------------ccchhHHHH--HHHHhC--------CCCcEE--
Confidence 111334 499999998 999998 999999
Q ss_pred cCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhh
Q psy14416 900 NNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEAT 979 (1065)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~ 979 (1065)
+++|||+| +|+.++|+|+ +++++|+++||+||+| |+.+....
T Consensus 429 -------------------------------~i~GDGsf-~m~~~eL~Ta-----~~~~lpv~iiV~NN~~-~g~~~~~~ 470 (547)
T PRK08322 429 -------------------------------AVCGDGGF-MMNSQELETA-----VRLGLPLVVLILNDNA-YGMIRWKQ 470 (547)
T ss_pred -------------------------------EEEcchhH-hccHHHHHHH-----HHhCCCeEEEEEeCCC-cchHHHHH
Confidence 99999999 9999999999 9999999999999988 55333211
Q ss_pred HhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 980 YASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 980 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
.. .. + .......+++||.++|++||+++++|++.+||+++++++++. ++|.||||.++++++.+
T Consensus 471 -~~-~~-~-----~~~~~~~~~~df~~lA~a~G~~~~~v~~~~eL~~al~~a~~~-~~p~lIev~v~~~~~~~ 534 (547)
T PRK08322 471 -EN-MG-F-----EDFGLDFGNPDFVKYAESYGAKGYRVESADDLLPTLEEALAQ-PGVHVIDCPVDYSENDR 534 (547)
T ss_pred -Hh-hc-C-----CcccccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhC-CCCEEEEEEecCccCcc
Confidence 11 00 1 111223367999999999999999999999999999999986 89999999999887754
No 12
>PRK08617 acetolactate synthase; Reviewed
Probab=100.00 E-value=2.9e-77 Score=725.88 Aligned_cols=538 Identities=22% Similarity=0.287 Sum_probs=435.5
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 345 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~ 345 (1065)
+++++++|++.|+++||++|||+||+++.++++++++++|++|.++||++|+|||+||+|+||+|+||++|+|||++|++
T Consensus 4 ~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~vt~GpG~~N~l 83 (552)
T PRK08617 4 KKYGADLVVDSLINQGVKYVFGIPGAKIDRVFDALEDSGPELIVTRHEQNAAFMAAAIGRLTGKPGVVLVTSGPGVSNLA 83 (552)
T ss_pred cccHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhhCCCCEEEeccHHHHHHHHHhHhhhcCCCEEEEECCCCcHhHhH
Confidence 47899999999999999999999999999999999877899999999999999999999999999999999999999999
Q ss_pred cccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecCh
Q psy14416 346 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPA 425 (1065)
Q Consensus 346 ~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~ 425 (1065)
+|+++|+.+++|||+|+|+.+....+++.+|++||.++|+++|||++++++++++++.+++|++.|.+++||||||+||.
T Consensus 84 ~gl~~A~~~~~PvlvisG~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 163 (552)
T PRK08617 84 TGLVTATAEGDPVVAIGGQVKRADRLKRTHQSMDNVALFRPITKYSAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQ 163 (552)
T ss_pred HHHHHHhhcCCCEEEEecCCcccccCCCCccccchhhhhhhhcceEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q psy14416 426 NLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505 (1065)
Q Consensus 426 Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvIl 505 (1065)
|++.++++..... + ........++++.+++++++|++||||+|+
T Consensus 164 dv~~~~~~~~~~~--~----------------------------------~~~~~~~~~~~~~i~~~~~~L~~AkrPvi~ 207 (552)
T PRK08617 164 DVVDAPVTSKAIA--P----------------------------------LSKPKLGPASPEDINYLAELIKNAKLPVLL 207 (552)
T ss_pred hhhhccccccccc--c----------------------------------ccCCCCCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 9988776432110 0 001112235677899999999999999999
Q ss_pred EccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCc-ccccH-------HHHhhhcCCCEEEEeCCccccccccCC
Q psy14416 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHP-NCVSA-------ARTHALQNADLVLLLGARLNWILHFGR 577 (1065)
Q Consensus 506 vG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hp-l~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g~ 577 (1065)
+|.++.++++.+++++|+|++|+||++|+++||.+|++|| +++|. ..++++++||+||.+|+++.+.....|
T Consensus 208 ~G~g~~~~~a~~~l~~lae~~~~pV~tt~~gkg~~~~~hp~~~~G~~g~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~ 287 (552)
T PRK08617 208 LGMRASSPEVTAAIRRLLERTNLPVVETFQAAGVISRELEDHFFGRVGLFRNQPGDELLKKADLVITIGYDPIEYEPRNW 287 (552)
T ss_pred ECCCcchhhHHHHHHHHHHHhCCCEEeccccCccCCCCCchhhccCCcCCCcHHHHHHHHhCCEEEEecCcccccccccc
Confidence 9999987788999999999999999999999999999998 57773 345678999999999998865544333
Q ss_pred CccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhh
Q psy14416 578 APRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVIL 657 (1065)
Q Consensus 578 ~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ 657 (1065)
.. .++.++||||.|+..+++++..++.+.+|++.+|++|.+.++... ......+|.+.|++..+...+....
T Consensus 288 ~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--- 359 (552)
T PRK08617 288 NS--EGDATIIHIDVLPAEIDNYYQPERELIGDIAATLDLLAEKLDGLS---LSPQSLEILEELRAQLEELAERPAR--- 359 (552)
T ss_pred cc--CCCCcEEEEeCChHHhCCccCCCeEEeCCHHHHHHHHHHhhhccc---CccchHHHHHHHHHHHHHhhhhhcc---
Confidence 32 235689999999999999999999999999999999988775211 0112345776666544332211100
Q ss_pred hhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCcc
Q psy14416 658 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 737 (1065)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~ 737 (1065)
....++ + +..+++ .|.+.+|++.+++.|+|++..|
T Consensus 360 --------------------------~~~~~i-----~---~~~~~~-----------~l~~~l~~~~ii~~d~G~~~~~ 394 (552)
T PRK08617 360 --------------------------LEEGAV-----H---PLRIIR-----------ALQDIVTDDTTVTVDVGSHYIW 394 (552)
T ss_pred --------------------------cCCCCc-----C---HHHHHH-----------HHHHhcCCCcEEEeCCcHHHHH
Confidence 112345 6 667888 9999999999999999987666
Q ss_pred cccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccccc
Q psy14416 738 DETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESG 817 (1065)
Q Consensus 738 ~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 817 (1065)
...++.. ..| +.++.
T Consensus 395 ~~~~~~~-----------------------------------------------~~p-------~~~~~----------- 409 (552)
T PRK08617 395 MARYFRS-----------------------------------------------YEP-------RHLLF----------- 409 (552)
T ss_pred HHHhccc-----------------------------------------------cCC-------CeEEe-----------
Confidence 4432210 000 00000
Q ss_pred ceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEE
Q psy14416 818 EVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVI 897 (1065)
Q Consensus 818 ~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~ 897 (1065)
++-+|+ ||+++|+++ ||+++. |+++|+
T Consensus 410 ---------------~~~~g~----------------------------mG~~lpaai--Ga~la~--------p~~~vv 436 (552)
T PRK08617 410 ---------------SNGMQT----------------------------LGVALPWAI--AAALVR--------PGKKVV 436 (552)
T ss_pred ---------------cCcccc----------------------------ccccccHHH--hhHhhc--------CCCcEE
Confidence 011333 499999998 999998 999999
Q ss_pred EccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCch
Q psy14416 898 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 977 (1065)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~ 977 (1065)
+++|||+| +|+.++|+|+ +++++|+++||+||++ |+.+..
T Consensus 437 ---------------------------------~i~GDGsf-~m~~~eL~Ta-----~~~~lpv~~vV~NN~~-~~~~~~ 476 (552)
T PRK08617 437 ---------------------------------SVSGDGGF-LFSAMELETA-----VRLKLNIVHIIWNDGH-YNMVEF 476 (552)
T ss_pred ---------------------------------EEEechHH-hhhHHHHHHH-----HHhCCCeEEEEEECCc-cchHHH
Confidence 99999999 9999999999 9999999999999987 665432
Q ss_pred hhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCcchhh
Q psy14416 978 ATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKPQNFS 1057 (1065)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~ 1057 (1065)
.. ...+ +. ...+ ..+++||.++|++||+++++|++.+||+++|+++++. ++|+||||.+++++....+.-.
T Consensus 477 ~~-~~~~--~~----~~~~-~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~-~~p~liev~~~~~~~~~~~~~~ 547 (552)
T PRK08617 477 QE-EMKY--GR----SSGV-DFGPVDFVKYAESFGAKGLRVTSPDELEPVLREALAT-DGPVVIDIPVDYSDNIKLMEQL 547 (552)
T ss_pred HH-Hhhc--CC----cccC-CCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhC-CCcEEEEEEecccccchhhhhc
Confidence 21 1111 11 1111 2257999999999999999999999999999999976 8999999999988886554433
Q ss_pred hh
Q psy14416 1058 WL 1059 (1065)
Q Consensus 1058 ~~ 1059 (1065)
|-
T Consensus 548 ~~ 549 (552)
T PRK08617 548 LP 549 (552)
T ss_pred cc
Confidence 43
No 13
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=4.9e-77 Score=727.23 Aligned_cols=541 Identities=21% Similarity=0.307 Sum_probs=432.9
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
..++++++|++.|+++||++|||+||+.+.++++++.+ .+|++|.||||++|+|||+||+|+||||+||++|+|||++|
T Consensus 19 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~AdgYar~tg~~gv~~~t~GpG~~N 98 (587)
T PRK06965 19 ADSIGAEILMKALAAEGVEFIWGYPGGAVLYIYDELYKQDKIQHVLVRHEQAAVHAADGYARATGKVGVALVTSGPGVTN 98 (587)
T ss_pred hhccHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCeEEEECCCccHHH
Confidence 56799999999999999999999999999999999966 57999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
+++||++|+.+++|||+|+|+.+....+++.+|++||.++|+++|||+.++++++++.+.+++|++.|+++++|||||+|
T Consensus 99 ~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~i 178 (587)
T PRK06965 99 AVTGIATAYMDSIPMVVISGQVPTAAIGQDAFQECDTVGITRPIVKHNFLVKDVRDLAETVKKAFYIARTGRPGPVVVDI 178 (587)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCCCcccccHHHHhcCCcceeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++.++++..... +... ........++++.+++++++|++||||+
T Consensus 179 P~Dv~~~~~~~~~~~--~~~~-------------------------------~~~~~~~~~~~~~i~~~~~~L~~AkrPv 225 (587)
T PRK06965 179 PKDVSKTPCEYEYPK--SVEM-------------------------------RSYNPVTKGHSGQIRKAVSLLLSAKRPY 225 (587)
T ss_pred ChhhhhChhccccCc--cccc-------------------------------cCCCCCCCCCHHHHHHHHHHHHhcCCCE
Confidence 999988775421100 0000 0001112346789999999999999999
Q ss_pred EEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccC
Q psy14416 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFG 576 (1065)
Q Consensus 504 IlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g 576 (1065)
||+|.++.++++.+++++|+|++|+||++|+++||.+|++||+++|. ...+++++||+||.+|+++++..+..
T Consensus 226 il~G~g~~~~~a~~~l~~lae~~g~pv~tt~~gkg~~~~~hpl~~G~~G~~~~~~a~~~~~~aDlvl~lG~~~~~~~~~~ 305 (587)
T PRK06965 226 IYTGGGVILANASRELRQLADLLGYPVTNTLMGLGAYPASDKKFLGMLGMHGTYEANMAMQHCDVLIAIGARFDDRVIGN 305 (587)
T ss_pred EEECCCccccchHHHHHHHHHHhCCCEEEccccCCCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEECCCCcccccCC
Confidence 99999999888899999999999999999999999999999999883 35568899999999999988754422
Q ss_pred CCcccc-CCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccch
Q psy14416 577 RAPRFK-SNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPV 655 (1065)
Q Consensus 577 ~~~~~~-~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 655 (1065)
+. .+. ++.++||||.|+..+++.+..++.+++|+..+|++|.+.++.............|.+.++++.+...... .
T Consensus 306 ~~-~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 382 (587)
T PRK06965 306 PA-HFASRPRKIIHIDIDPSSISKRVKVDIPIVGDVKEVLKELIEQLQTAEHGPDADALAQWWKQIEGWRSRDCLKY--D 382 (587)
T ss_pred hh-hcCCCCceEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChhhc--c
Confidence 21 232 3478999999999999988999999999999999999877521100000112456554443222110000 0
Q ss_pred hhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcC
Q psy14416 656 ILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG 735 (1065)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~ 735 (1065)
....++ + +..+++ .|.+.+|+|++++.|+|++.
T Consensus 383 ----------------------------~~~~~i-----~---~~~~~~-----------~l~~~l~~d~ii~~d~G~~~ 415 (587)
T PRK06965 383 ----------------------------RESEII-----K---PQYVVE-----------KLWELTDGDAFVCSDVGQHQ 415 (587)
T ss_pred ----------------------------ccCCCc-----C---HHHHHH-----------HHHhhCCCCeEEEeCCcHHH
Confidence 011245 6 677888 99999999999999999866
Q ss_pred cccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccc
Q psy14416 736 GFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVE 815 (1065)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 815 (1065)
.|..+++.. ..| +.++
T Consensus 416 ~~~~~~~~~-----------------------------------------------~~p-------~~~~---------- 431 (587)
T PRK06965 416 MWAAQFYRF-----------------------------------------------NEP-------RRWI---------- 431 (587)
T ss_pred HHHHHhccc-----------------------------------------------CCC-------CeEE----------
Confidence 664433221 011 1111
Q ss_pred ccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEE
Q psy14416 816 SGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVIL 895 (1065)
Q Consensus 816 ~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 895 (1065)
++|-+|+| |+++|+++ ||+++. |+++
T Consensus 432 ----------------~~~~~gsm----------------------------G~glpaai--Ga~lA~--------p~r~ 457 (587)
T PRK06965 432 ----------------NSGGLGTM----------------------------GVGLPYAM--GIKMAH--------PDDD 457 (587)
T ss_pred ----------------cCCCcccc----------------------------cchHHHHH--HHHHhC--------CCCc
Confidence 23335555 99999998 999998 9999
Q ss_pred EEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCC
Q psy14416 896 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 975 (1065)
Q Consensus 896 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~ 975 (1065)
|+ +++|||+| +|+.++|+|+ +|+++|+++||+||++ |+.+
T Consensus 458 Vv---------------------------------~i~GDGsf-~m~~~eL~Ta-----~r~~lpviivV~NN~~-~~~i 497 (587)
T PRK06965 458 VV---------------------------------CITGEGSI-QMCIQELSTC-----LQYDTPVKIISLNNRY-LGMV 497 (587)
T ss_pred EE---------------------------------EEEcchhh-hcCHHHHHHH-----HHcCCCeEEEEEECCc-chHH
Confidence 99 99999999 9999999999 9999999999999987 4433
Q ss_pred chhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 976 DEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
... ......+.... ....+.+||.++|++||+++++|+|.+||+++|+++++..++|+||||.++++++..
T Consensus 498 ~~~--q~~~~~~~~~~----~~~~~~~d~~~iA~a~G~~~~~v~~~~eL~~al~~a~~~~~~p~lieV~i~~~~~~~ 568 (587)
T PRK06965 498 RQW--QEIEYSKRYSH----SYMDALPDFVKLAEAYGHVGMRIEKTSDVEPALREALRLKDRTVFLDFQTDPTENVW 568 (587)
T ss_pred HHH--HHHhcCCCccc----cCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhcCCCcEEEEEEeccccccC
Confidence 321 11111121111 111235799999999999999999999999999999974378999999999887643
No 14
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=7.7e-77 Score=725.47 Aligned_cols=540 Identities=21% Similarity=0.296 Sum_probs=431.4
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
..++++++|++.|+++||++|||+||+.+.+|++++.+ ++|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus 9 ~~~t~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~I~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N 88 (595)
T PRK09107 9 RQMTGAEMVVQALKDQGVEHIFGYPGGAVLPIYDEIFQQDDIQHILVRHEQGAGHAAEGYARSTGKPGVVLVTSGPGATN 88 (595)
T ss_pred hhhhHHHHHHHHHHHCCCCEEEEccCcchHHHHHHHhhcCCCeEEEECChHHHHHHHHHHHHHhCCCEEEEECCCccHhH
Confidence 35689999999999999999999999999999999965 58999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
+++||++|+.+++|||+|+|+.+....+.+.+|++||..+++++|||++++.+++++.+.+++|++.|+++++|||||+|
T Consensus 89 ~l~gia~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~i 168 (595)
T PRK09107 89 AVTPLQDALMDSIPLVCITGQVPTHLIGSDAFQECDTVGITRPCTKHNWLVKDVNDLARVIHEAFHVATSGRPGPVVVDI 168 (595)
T ss_pred HHHHHHHHhhcCCCEEEEEcCCChhhcCCCCCcccchhhhhhhheEEEEEeCCHHHHHHHHHHHHHHhcCCCCceEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++.++.+.......+.. ........++.+.+++++++|++||||+
T Consensus 169 P~Dv~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~l~~a~~~L~~A~rPv 216 (595)
T PRK09107 169 PKDVQFATGTYTPPQKAPVH--------------------------------VSYQPKVKGDAEAITEAVELLANAKRPV 216 (595)
T ss_pred CCChhhcccccccccccccc--------------------------------cCCCCCCCCCHHHHHHHHHHHHhCCCcE
Confidence 99998766432110000000 0001123457789999999999999999
Q ss_pred EEEccCCCchh--HHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccc
Q psy14416 504 VIIGKGAAYSQ--AETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILH 574 (1065)
Q Consensus 504 IlvG~g~~~~~--a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~ 574 (1065)
||+|.++.+++ +.+++++|+|++|+||++|+++||++|++||+++|. ....++++||+||.+|+++++..+
T Consensus 217 il~G~g~~~~~~~a~~~l~~lae~lg~pv~tt~~gkg~~p~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~ 296 (595)
T PRK09107 217 IYSGGGVINSGPEASRLLRELVELTGFPITSTLMGLGAYPASGKNWLGMLGMHGTYEANMAMHDCDVMLCVGARFDDRIT 296 (595)
T ss_pred EEECCcccccchhHHHHHHHHHHHHCCCEEECccccccCCCCCCcccCCCCCCccHHHHHHHHhCCEEEEECCCCCcccc
Confidence 99999997664 789999999999999999999999999999999883 345678899999999999987655
Q ss_pred cCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccc
Q psy14416 575 FGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLP 654 (1065)
Q Consensus 575 ~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 654 (1065)
..+. .+.++.++||||.|+..++++++.++.|++|+..+|++|.+.++.............|.+++.+.........
T Consensus 297 ~~~~-~~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 373 (595)
T PRK09107 297 GRLD-AFSPNSKKIHIDIDPSSINKNVRVDVPIIGDVGHVLEDMLRLWKARGKKPDKEALADWWGQIARWRARNSLAY-- 373 (595)
T ss_pred Cchh-hcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChhhc--
Confidence 4332 2456678999999999999999999999999999999999887532111111122456555443322110000
Q ss_pred hhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCC-CcEEEEECCCC
Q psy14416 655 VILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLP-VILVIVNNNGI 733 (1065)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP-~d~ilv~d~G~ 733 (1065)
. ....++ + +..+++ .|.+.++ +|.+++.|+|+
T Consensus 374 ~----------------------------~~~~~l-----~---~~~~~~-----------~l~~~l~~~d~iv~~d~G~ 406 (595)
T PRK09107 374 T----------------------------PSDDVI-----M---PQYAIQ-----------RLYELTKGRDTYITTEVGQ 406 (595)
T ss_pred c----------------------------CCCCCc-----C---HHHHHH-----------HHHHhCCCCCeEEEECCcH
Confidence 0 011245 6 677888 9999997 58999999987
Q ss_pred cCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccc
Q psy14416 734 YGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASI 813 (1065)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 813 (1065)
+..|...++.. ..| +.++
T Consensus 407 ~~~~~~~~~~~-----------------------------------------------~~p-------~~~~-------- 424 (595)
T PRK09107 407 HQMWAAQFFGF-----------------------------------------------EEP-------NRWM-------- 424 (595)
T ss_pred HHHHHHHhccc-----------------------------------------------CCC-------CeEE--------
Confidence 66664433221 011 0111
Q ss_pred ccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheecccccccccc
Q psy14416 814 VESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPV 893 (1065)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~ 893 (1065)
++|.+|+| |+++|+++ ||+++. |+
T Consensus 425 ------------------~~~~~gsm----------------------------G~glpaai--Ga~lA~--------p~ 448 (595)
T PRK09107 425 ------------------TSGGLGTM----------------------------GYGLPAAL--GVQIAH--------PD 448 (595)
T ss_pred ------------------cCCCchhh----------------------------hhhHHHHH--HHHHhC--------CC
Confidence 13335555 99999999 999998 99
Q ss_pred EEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccC
Q psy14416 894 ILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG 973 (1065)
Q Consensus 894 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~ 973 (1065)
++|| +++|||+| +|+.++|+|+ +|+++|+++||+||+| |+
T Consensus 449 r~Vv---------------------------------~i~GDG~f-~m~~~EL~Ta-----~r~~lpvi~vV~NN~~-y~ 488 (595)
T PRK09107 449 ALVI---------------------------------DIAGDASI-QMCIQEMSTA-----VQYNLPVKIFILNNQY-MG 488 (595)
T ss_pred CeEE---------------------------------EEEcCchh-hccHHHHHHH-----HHhCCCeEEEEEeCCc-cH
Confidence 9999 99999999 9999999999 9999999999999987 44
Q ss_pred CCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 974 GFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 974 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
.+... ......+.... ....+++||.++|++||+++++|+|.+||+++|+++++. ++|+||||.+++++..
T Consensus 489 ~i~~~--q~~~~~~~~~~----~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~-~~p~lIeV~i~~~~~~ 559 (595)
T PRK09107 489 MVRQW--QQLLHGNRLSH----SYTEAMPDFVKLAEAYGAVGIRCEKPGDLDDAIQEMIDV-DKPVIFDCRVANLENC 559 (595)
T ss_pred HHHHH--HHHHhCCcccc----ccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhC-CCCEEEEEEecCcccc
Confidence 33221 11111111111 111235899999999999999999999999999999986 8999999999987643
No 15
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=100.00 E-value=1.1e-76 Score=721.41 Aligned_cols=531 Identities=22% Similarity=0.329 Sum_probs=432.1
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 345 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~ 345 (1065)
+++++++|++.|+++||++|||+||+.+.++++++.+++|++|.|+||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 7 ~~~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~i~~v~~~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~n~~ 86 (561)
T PRK06048 7 KMTGARAIIKCLEKEGVEVIFGYPGGAIIPVYDELYDSDLRHILVRHEQAAAHAADGYARATGKVGVCVATSGPGATNLV 86 (561)
T ss_pred cccHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhhCCCeEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHH
Confidence 57899999999999999999999999999999999878899999999999999999999999999999999999999999
Q ss_pred cccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecCh
Q psy14416 346 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPA 425 (1065)
Q Consensus 346 ~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~ 425 (1065)
+||++|+.+++|||+|+|+.+..+.+.+++|++||..+|+++|||++++++++++++.+++|++.|.+++||||||+||.
T Consensus 87 ~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~ 166 (561)
T PRK06048 87 TGIATAYMDSVPIVALTGQVPRSMIGNDAFQEADITGITMPITKHNYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPK 166 (561)
T ss_pred HHHHHHhhcCCCEEEEeccCCccccCCCCccccchhhhccCcceEEEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q psy14416 426 NLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505 (1065)
Q Consensus 426 Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvIl 505 (1065)
|++.++++... + .+... ....+...++.+.+++++++|++||||+|+
T Consensus 167 dv~~~~~~~~~-~-~~~~~-------------------------------~~~~~~~~~~~~~i~~~a~~L~~AkrPvil 213 (561)
T PRK06048 167 DVTTAEIDFDY-P-DKVEL-------------------------------RGYKPTYKGNPQQIKRAAELIMKAERPIIY 213 (561)
T ss_pred hhhhccccccc-C-ccccc-------------------------------ccCCCCCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 99877654210 0 00000 000111235778999999999999999999
Q ss_pred EccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccCCC
Q psy14416 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFGRA 578 (1065)
Q Consensus 506 vG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g~~ 578 (1065)
+|.++.++++.+++++|+|++|+||++|+++||.+|++||+++|. ..++++++||+||.+|+++++..+..+.
T Consensus 214 ~G~g~~~~~a~~~l~~lae~lg~pV~tt~~~kg~~~~~hpl~~G~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~ 293 (561)
T PRK06048 214 AGGGVISSNASEELVELAETIPAPVTTTLMGIGAIPTEHPLSLGMLGMHGTKYANYAIQESDLIIAVGARFDDRVTGKLA 293 (561)
T ss_pred ECCCcccccHHHHHHHHHHHhCCCEEEccccCccCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEECCCCCccccCChh
Confidence 999999888899999999999999999999999999999999983 3466889999999999999876554332
Q ss_pred ccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhh
Q psy14416 579 PRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILV 658 (1065)
Q Consensus 579 ~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~ 658 (1065)
.+.++.++||||.|+..+++++..++.+++|+.++|++|.+.+.. ..+..|.+.++...+...... .
T Consensus 294 -~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~-------~~~~~~~~~~~~~~~~~~~~~--~--- 360 (561)
T PRK06048 294 -SFAPNAKIIHIDIDPAEISKNVKVDVPIVGDAKQVLKSLIKYVQY-------CDRKEWLDKINQWKKEYPLKY--K--- 360 (561)
T ss_pred -hcCCCCeEEEEECCHHHhCCCCCCCeEEEeCHHHHHHHHHHhccc-------cCcHHHHHHHHHHHHhChhhc--c---
Confidence 245667899999999999999999999999999999999987752 123457666554332211100 0
Q ss_pred hhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCccc
Q psy14416 659 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 738 (1065)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~~ 738 (1065)
....++ + +..+++ .|.+.+| +.+++.|.|++..|.
T Consensus 361 -------------------------~~~~~l-----~---~~~~~~-----------~l~~~~p-~~iiv~d~g~~~~~~ 395 (561)
T PRK06048 361 -------------------------EREDVI-----K---PQYVIE-----------QIYELCP-DAIIVTEVGQHQMWA 395 (561)
T ss_pred -------------------------CCCCCc-----C---HHHHHH-----------HHHhhCC-CcEEEEcCcHHHHHH
Confidence 012245 6 667888 9999998 789999998765554
Q ss_pred ccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccccc
Q psy14416 739 ETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGE 818 (1065)
Q Consensus 739 ~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 818 (1065)
..++.. ..| ..++
T Consensus 396 ~~~~~~-----------------------------------------------~~~-------~~~~------------- 408 (561)
T PRK06048 396 AQYFKY-----------------------------------------------KYP-------RTFI------------- 408 (561)
T ss_pred HHhccc-----------------------------------------------CCC-------CeEE-------------
Confidence 322211 000 0011
Q ss_pred eeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEEE
Q psy14416 819 VTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 898 (1065)
Q Consensus 819 ~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 898 (1065)
+++-+|+| |+++|+++ ||+++. |+++|+
T Consensus 409 -------------~~~~~g~m----------------------------G~glpaai--Ga~la~--------p~~~Vv- 436 (561)
T PRK06048 409 -------------TSGGLGTM----------------------------GYGFPAAI--GAKVGK--------PDKTVI- 436 (561)
T ss_pred -------------eCCCcccc----------------------------ccHHHHHH--HHHHhC--------CCCcEE-
Confidence 12334555 99999888 999998 999999
Q ss_pred ccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchh
Q psy14416 899 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEA 978 (1065)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~ 978 (1065)
+++|||+| +|+.++|+|+ +|+++|+++||+||+| |+.+...
T Consensus 437 --------------------------------~i~GDG~f-~m~~~eL~Ta-----~~~~l~i~~vV~NN~~-y~~i~~~ 477 (561)
T PRK06048 437 --------------------------------DIAGDGSF-QMNSQELATA-----VQNDIPVIVAILNNGY-LGMVRQW 477 (561)
T ss_pred --------------------------------EEEeCchh-hccHHHHHHH-----HHcCCCeEEEEEECCc-cHHHHHH
Confidence 99999999 9999999999 9999999999999987 4432221
Q ss_pred hHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 979 TYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 979 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
......+.. ......+++||.++|++||+++++|+|.+||+++|+++++. ++|+||||.++++++..
T Consensus 478 --~~~~~~~~~----~~~~~~~~~d~~~lA~a~G~~~~~v~t~~el~~al~~a~~~-~~p~liev~~~~~~~~~ 544 (561)
T PRK06048 478 --QELFYDKRY----SHTCIKGSVDFVKLAEAYGALGLRVEKPSEVRPAIEEAVAS-DRPVVIDFIVECEENVS 544 (561)
T ss_pred --HHHHcCCcc----cccCCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhC-CCCEEEEEEecCccccC
Confidence 111111111 11222367999999999999999999999999999999986 89999999999887653
No 16
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=100.00 E-value=1.1e-76 Score=727.44 Aligned_cols=545 Identities=21% Similarity=0.297 Sum_probs=435.0
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
.+++++++|++.|+++||+++||+||+.+.+|++++.++ +|++|.|+||++|+|||+||+|+||+|+||++|+|||++|
T Consensus 29 ~~~~~a~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N 108 (612)
T PRK07789 29 ERMTGAQAVVRSLEELGVDVVFGIPGGAILPVYDPLFDSTKVRHVLVRHEQGAGHAAEGYAQATGRVGVCMATSGPGATN 108 (612)
T ss_pred ccccHHHHHHHHHHHCCCCEEEEcCCcchHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHH
Confidence 357899999999999999999999999999999999654 7999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
+++||++|+.+++|||+|+|+.+....+.+++|++||..+|+++|||+.++++++++++.+++|++.|+++|+|||||+|
T Consensus 109 ~l~gl~~A~~~~~PllvI~G~~~~~~~~~~~~q~~d~~~l~~~~tk~s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~i 188 (612)
T PRK07789 109 LVTPIADANMDSVPVVAITGQVGRGLIGTDAFQEADIVGITMPITKHNFLVTDADDIPRVIAEAFHIASTGRPGPVLVDI 188 (612)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCCcCcccchhhhhhcceeEEEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++.++++..... ...+ ........++.+.+++++++|.+||||+
T Consensus 189 P~Dv~~~~~~~~~~~--~~~~-------------------------------~~~~~~~~p~~~~i~~~~~~L~~AkrPl 235 (612)
T PRK07789 189 PKDALQAQTTFSWPP--RMDL-------------------------------PGYRPVTKPHGKQIREAAKLIAAARRPV 235 (612)
T ss_pred ccchhhcccccccCc--cccc-------------------------------cCCCCCCCCCHHHHHHHHHHHHhCCCCE
Confidence 999988765321000 0000 0001122466788999999999999999
Q ss_pred EEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccC
Q psy14416 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFG 576 (1065)
Q Consensus 504 IlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g 576 (1065)
||+|.++.++++.+++++|+|++|+||++|+++||.+|++||+++|. ...+++++||+||.+|+++++..+..
T Consensus 236 Il~G~g~~~~~a~~~l~~lae~l~~PV~tt~~~kg~~p~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~l~~~~t~~ 315 (612)
T PRK07789 236 LYVGGGVIRAEASAELRELAELTGIPVVTTLMARGAFPDSHPQHLGMPGMHGTVAAVAALQRSDLLIALGARFDDRVTGK 315 (612)
T ss_pred EEECCCccccCHHHHHHHHHHHHCCCEEEcccccccCCCCChhhccCCcccCcHHHHHHHHhCCEEEEECCCCCccccCC
Confidence 99999998888899999999999999999999999999999999873 34578889999999999998754433
Q ss_pred CCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchh
Q psy14416 577 RAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVI 656 (1065)
Q Consensus 577 ~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 656 (1065)
+ ..+.++.++||||.|+..+++++..++.|++|+..+|++|.+.++.............|.+.+++.+........+
T Consensus 316 ~-~~~~~~~~~i~Id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-- 392 (612)
T PRK07789 316 L-DSFAPDAKVIHADIDPAEIGKNRHADVPIVGDVKEVIAELIAALRAEHAAGGKPDLTAWWAYLDGWRETYPLGYDE-- 392 (612)
T ss_pred h-hhcCCCCcEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhhhcccccccccHHHHHHHHHHHHHhCcccccc--
Confidence 2 2355667899999999999999999999999999999999988752110000012245665554432221111000
Q ss_pred hhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCc
Q psy14416 657 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 736 (1065)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~ 736 (1065)
....++ + +..+++ .|.+.+|++++++.|.|++..
T Consensus 393 ---------------------------~~~~~l-----~---~~~~~~-----------~l~~~l~~~~ivv~d~G~~~~ 426 (612)
T PRK07789 393 ---------------------------PSDGSL-----A---PQYVIE-----------RLGEIAGPDAIYVAGVGQHQM 426 (612)
T ss_pred ---------------------------ccCCCc-----C---HHHHHH-----------HHHhhCCCCeEEEECCcHHHH
Confidence 112245 6 677888 999999999999999998666
Q ss_pred ccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccc
Q psy14416 737 FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVES 816 (1065)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 816 (1065)
|...++.. ..| +.+
T Consensus 427 ~~~~~~~~-----------------------------------------------~~p-------~~~------------ 440 (612)
T PRK07789 427 WAAQFIDY-----------------------------------------------EKP-------RTW------------ 440 (612)
T ss_pred HHHHhccc-----------------------------------------------CCC-------CeE------------
Confidence 64433221 001 011
Q ss_pred cceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEE
Q psy14416 817 GEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 896 (1065)
Q Consensus 817 ~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v 896 (1065)
-|+|-+|+| |+++|+++ ||+++. |+++|
T Consensus 441 --------------~~~~~~G~m----------------------------G~glpaai--Ga~la~--------p~~~V 468 (612)
T PRK07789 441 --------------LNSGGLGTM----------------------------GYAVPAAM--GAKVGR--------PDKEV 468 (612)
T ss_pred --------------EcCCCcccc----------------------------cchhhhHH--hhhccC--------CCCcE
Confidence 133445666 99999998 999998 99999
Q ss_pred EEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCc
Q psy14416 897 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 976 (1065)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~ 976 (1065)
+ +++|||+| +|+.++|+|+ +|+++|+++||+||+| |+.+.
T Consensus 469 v---------------------------------~i~GDG~f-~m~~~eL~Ta-----~~~~lpv~ivV~NN~~-~g~i~ 508 (612)
T PRK07789 469 W---------------------------------AIDGDGCF-QMTNQELATC-----AIEGIPIKVALINNGN-LGMVR 508 (612)
T ss_pred E---------------------------------EEEcchhh-hccHHHHHHH-----HHcCCCeEEEEEECCc-hHHHH
Confidence 9 99999999 9999999999 9999999999999988 44332
Q ss_pred hhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 977 EATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
... .....+............+.+||.++|++||++|++|++.+||+++|+++++..++|+||||.++++++.
T Consensus 509 ~~q--~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~a~~~~~~p~lIev~i~~~~~~ 581 (612)
T PRK07789 509 QWQ--TLFYEERYSNTDLHTHSHRIPDFVKLAEAYGCVGLRCEREEDVDAVIEKARAINDRPVVIDFVVGKDAMV 581 (612)
T ss_pred HHH--HHhhCCCcceeecCcCCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhcCCCcEEEEEEECCcccc
Confidence 211 1111111111000111224589999999999999999999999999999997437999999999987653
No 17
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=1.3e-76 Score=722.12 Aligned_cols=536 Identities=21% Similarity=0.295 Sum_probs=435.2
Q ss_pred ccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 264 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 264 ~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
++.++++++|++.|+++||++|||+||+++.+|++++.+++|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus 13 ~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~~N 92 (571)
T PRK07710 13 EKLMTGAQMLIEALEKEGVEVIFGYPGGAVLPLYDALYDCGIPHILTRHEQGAIHAAEGYARISGKPGVVIATSGPGATN 92 (571)
T ss_pred cccchHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCcEEEeCCHHHHHHHHHHHHHHhCCCeEEEECCCccHHH
Confidence 34578999999999999999999999999999999998789999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
+++||++|+.+++|||+|||+++....+++++|++||..+|+++|||++++.+++++++.+++|++.|.++|||||||+|
T Consensus 93 ~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~i 172 (571)
T PRK07710 93 VVTGLADAMIDSLPLVVFTGQVATSVIGSDAFQEADIMGITMPVTKHNYQVRKASDLPRIIKEAFHIATTGRPGPVLIDI 172 (571)
T ss_pred HHHHHHHHhhcCCCEEEEeccCCccccCCCCccccchhhhhhcccceEEecCCHHHHHHHHHHHHHHHhcCCCCcEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++.++++..... +.. + ........++...+++++++|++||||+
T Consensus 173 P~Dv~~~~~~~~~~~--~~~------~-------------------------~~~~~~~~~~~~~i~~~~~~L~~A~rPv 219 (571)
T PRK07710 173 PKDMVVEEGEFCYDV--QMD------L-------------------------PGYQPNYEPNLLQIRKLVQAVSVAKKPV 219 (571)
T ss_pred ChhHhhccccccccc--ccc------c-------------------------cCCCCCCCCCHHHHHHHHHHHHhCCCCE
Confidence 999987765321100 000 0 0001112357788999999999999999
Q ss_pred EEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccC
Q psy14416 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFG 576 (1065)
Q Consensus 504 IlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g 576 (1065)
|++|.++.+.++.++|++|+|++|+||++|+++||.+|++||+++|. ...+++++||+||.+|+++++..+.
T Consensus 220 Il~G~g~~~~~a~~~l~~lae~~~~pv~tt~~~kg~i~~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~~- 298 (571)
T PRK07710 220 ILAGAGVLHAKASKELTSYAEQQEIPVVHTLLGLGGFPADHPLFLGMAGMHGTYTANMALYECDLLINIGARFDDRVTG- 298 (571)
T ss_pred EEECCCcCccchHHHHHHHHHHhCCCEEEcCccCccCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEeCCCCCccccC-
Confidence 99999998777889999999999999999999999999999999883 3567788999999999999875443
Q ss_pred CCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchh
Q psy14416 577 RAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVI 656 (1065)
Q Consensus 577 ~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 656 (1065)
+...+.++.++||||.|+..+++.+..++.+++|+..+|++|.+.++.. .....|.+.++...++..... .
T Consensus 299 ~~~~~~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--~- 369 (571)
T PRK07710 299 NLAYFAKEATVAHIDIDPAEIGKNVPTEIPIVADAKQALQVLLQQEGKK------ENHHEWLSLLKNWKEKYPLSY--K- 369 (571)
T ss_pred chhhcCCCCeEEEEECCHHHhcCcCCCCeEEecCHHHHHHHHHHhhhcc------CCcHHHHHHHHHHHHhChhhh--c-
Confidence 3223556678999999999999999999999999999999998876421 123567766655433221110 0
Q ss_pred hhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCc
Q psy14416 657 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 736 (1065)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~ 736 (1065)
....++ + +..+++ .|.+.+|++++++.|.|++..
T Consensus 370 ---------------------------~~~~~~-----~---~~~~~~-----------~l~~~l~~~~iv~~d~g~~~~ 403 (571)
T PRK07710 370 ---------------------------RNSESI-----K---PQKAIE-----------MLYEITKGEAIVTTDVGQHQM 403 (571)
T ss_pred ---------------------------CCCCCc-----C---HHHHHH-----------HHHhhCCCCeEEEECCcHHHH
Confidence 011245 5 667888 999999999999999987655
Q ss_pred ccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccc
Q psy14416 737 FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVES 816 (1065)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 816 (1065)
|...++.. ..| +.++
T Consensus 404 ~~~~~~~~-----------------------------------------------~~~-------~~~~----------- 418 (571)
T PRK07710 404 WAAQYYPF-----------------------------------------------KTP-------DKWV----------- 418 (571)
T ss_pred HHHHhccc-----------------------------------------------CCC-------CeEE-----------
Confidence 53321110 001 0011
Q ss_pred cceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEE
Q psy14416 817 GEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 896 (1065)
Q Consensus 817 ~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v 896 (1065)
++|-+|+| |+++|+++ ||+++. |+++|
T Consensus 419 ---------------~~~~~g~m----------------------------G~glpaAi--Gaala~--------p~~~v 445 (571)
T PRK07710 419 ---------------TSGGLGTM----------------------------GFGLPAAI--GAQLAK--------PDETV 445 (571)
T ss_pred ---------------cCCCcccc----------------------------cchHHHHH--HHHHhC--------CCCcE
Confidence 23345666 99999888 999998 99999
Q ss_pred EEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCc
Q psy14416 897 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 976 (1065)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~ 976 (1065)
+ +++|||+| +|+.++|+|+ +|+++|+++||+||+| |+.+.
T Consensus 446 v---------------------------------~i~GDGsf-~m~~~eL~ta-----~r~~lpi~ivV~NN~~-~~~i~ 485 (571)
T PRK07710 446 V---------------------------------AIVGDGGF-QMTLQELSVI-----KELSLPVKVVILNNEA-LGMVR 485 (571)
T ss_pred E---------------------------------EEEcchHH-hhhHHHHHHH-----HHhCCCeEEEEEECch-HHHHH
Confidence 9 99999999 9999999999 9999999999999988 44333
Q ss_pred hhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCc
Q psy14416 977 EATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKP 1053 (1065)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~ 1053 (1065)
... ....... .......+++||.++|++||++++++++.+||+++++++++. ++|+||||.++++++..+
T Consensus 486 ~~~--~~~~~~~----~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~-~~p~lieV~vd~~~~~~~ 555 (571)
T PRK07710 486 QWQ--EEFYNQR----YSHSLLSCQPDFVKLAEAYGIKGVRIDDELEAKEQLQHAIEL-QEPVVIDCRVLQSEKVMP 555 (571)
T ss_pred HHH--HHHhCCc----ceeccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhC-CCCEEEEEEecCcccccc
Confidence 221 1111111 011222356999999999999999999999999999999986 899999999998876543
No 18
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=1.6e-76 Score=720.84 Aligned_cols=533 Identities=24% Similarity=0.335 Sum_probs=435.6
Q ss_pred ccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccc
Q psy14416 264 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 342 (1065)
Q Consensus 264 ~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~ 342 (1065)
+..++++++|++.|+++||+++||+||+++.+|++++.++ +|++|.++||++|+|||+||+|+||+|+||++|+|||++
T Consensus 10 ~~~~~~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~ 89 (564)
T PRK08155 10 RKRFTGAELIVRLLERQGIRIVTGIPGGAILPLYDALSQSTQIRHILARHEQGAGFIAQGMARTTGKPAVCMACSGPGAT 89 (564)
T ss_pred CCcccHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHcCCCeEEEECCCCcHH
Confidence 3456899999999999999999999999999999999764 799999999999999999999999999999999999999
Q ss_pred ccccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEe
Q psy14416 343 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLD 422 (1065)
Q Consensus 343 N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~ 422 (1065)
|+++||++|+.+++|||+|+|+++....+.+++|++||.++|+++|||+.++++++++++.+++|++.|.++|+|||||+
T Consensus 90 N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~i~ 169 (564)
T PRK08155 90 NLVTAIADARLDSIPLVCITGQVPASMIGTDAFQEVDTYGISIPITKHNYLVRDIEELPQVISDAFRIAQSGRPGPVWID 169 (564)
T ss_pred HHHHHHHHHHhcCCCEEEEeccCCcccccCCCccccchhhhhhccceEEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCc
Q psy14416 423 FPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAP 502 (1065)
Q Consensus 423 iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrP 502 (1065)
||.|++.++++....+ .. ........++++.+++++++|++||||
T Consensus 170 iP~Dv~~~~~~~~~~~---~~--------------------------------~~~~~~~~~~~~~i~~~~~~L~~AkrP 214 (564)
T PRK08155 170 IPKDVQTAVIELEALP---AP--------------------------------AEKDAAPAFDEESIRDAAAMINAAKRP 214 (564)
T ss_pred cCHhHHhhhcccccCC---Cc--------------------------------cccCCCCCCCHHHHHHHHHHHHhCCCC
Confidence 9999988776532111 00 000112345677899999999999999
Q ss_pred EEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCcccccccc
Q psy14416 503 LVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHF 575 (1065)
Q Consensus 503 vIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~ 575 (1065)
+|++|.++.++++.+++++|+|++|+||++|+++||.+|++||+++|. ..++.+++||+||.+|++++++.+.
T Consensus 215 vIl~G~g~~~~~a~~~l~~lae~~~~pv~tt~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~ 294 (564)
T PRK08155 215 VLYLGGGVINSGAPARARELAEKAQLPTTMTLMALGMLPKAHPLSLGMLGMHGARSTNYILQEADLLIVLGARFDDRAIG 294 (564)
T ss_pred EEEECCCccccchHHHHHHHHHHHCCCEEEcccccccCCCCChhhccCCCCCCCHHHHHHHHhCCEEEEECCCCCccccC
Confidence 999999998878889999999999999999999999999999999873 3556789999999999999887654
Q ss_pred CCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccch
Q psy14416 576 GRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPV 655 (1065)
Q Consensus 576 g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 655 (1065)
.+. .+.++.++||||.|+..+++.+..++.+.+|+.++|++|.+.+.. ..+..|.++++...+......+
T Consensus 295 ~~~-~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~-- 364 (564)
T PRK08155 295 KTE-QFCPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQLLPLVEA-------QPRAEWHQLVADLQREFPCPIP-- 364 (564)
T ss_pred CHh-hcCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhcc-------cchHHHHHHHHHHHHhChhhcc--
Confidence 332 245667899999999999999999999999999999999887752 1235677665543332111110
Q ss_pred hhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcC
Q psy14416 656 ILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG 735 (1065)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~ 735 (1065)
....|+ + +..+++ .|.+.+|++.+++.|+|++.
T Consensus 365 ----------------------------~~~~~l-----~---~~~v~~-----------~l~~~l~~~~iv~~D~G~~~ 397 (564)
T PRK08155 365 ----------------------------KADDPL-----S---HYGLIN-----------AVAACVDDNAIITTDVGQHQ 397 (564)
T ss_pred ----------------------------cCCCCc-----C---HHHHHH-----------HHHHhCCCCeEEEECCchHH
Confidence 011246 6 777888 99999999999999998755
Q ss_pred cccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccc
Q psy14416 736 GFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVE 815 (1065)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 815 (1065)
.|...++.. ..| ..++
T Consensus 398 ~~~~~~~~~-----------------------------------------------~~~-------~~~~---------- 413 (564)
T PRK08155 398 MWTAQAYPL-----------------------------------------------NRP-------RQWL---------- 413 (564)
T ss_pred HHHHHhccc-----------------------------------------------cCC-------CeEE----------
Confidence 553322110 000 0001
Q ss_pred ccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEE
Q psy14416 816 SGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVIL 895 (1065)
Q Consensus 816 ~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 895 (1065)
++|-+|+| |+++++++ ||+++. |+++
T Consensus 414 ----------------~~~~~g~m----------------------------G~~lpaai--Ga~la~--------~~~~ 439 (564)
T PRK08155 414 ----------------TSGGLGTM----------------------------GFGLPAAI--GAALAN--------PERK 439 (564)
T ss_pred ----------------eCCCcccc----------------------------cchhHHHH--HHHHhC--------CCCc
Confidence 12334445 99999888 999998 8999
Q ss_pred EEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCC
Q psy14416 896 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 975 (1065)
Q Consensus 896 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~ 975 (1065)
|+ +++|||+| +|+.++++|+ +++++|+++||+||+| |+.+
T Consensus 440 vv---------------------------------~i~GDGsf-~~~~~eL~ta-----~~~~lpvi~vV~NN~~-~g~~ 479 (564)
T PRK08155 440 VL---------------------------------CFSGDGSL-MMNIQEMATA-----AENQLDVKIILMNNEA-LGLV 479 (564)
T ss_pred EE---------------------------------EEEccchh-hccHHHHHHH-----HHhCCCeEEEEEeCCc-cccc
Confidence 99 99999999 9999999999 9999999999999987 5544
Q ss_pred chhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCc
Q psy14416 976 DEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKP 1053 (1065)
Q Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~ 1053 (1065)
.... ...+ ..... .....+++||.++|++||+++.++++.+||+++|+++++. ++|+||||.++++++..+
T Consensus 480 ~~~q-~~~~-~~~~~----~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~-~~p~lIeV~~~~~~~~~~ 550 (564)
T PRK08155 480 HQQQ-SLFY-GQRVF----AATYPGKINFMQIAAGFGLETCDLNNEADPQAALQEAINR-PGPALIHVRIDAEEKVYP 550 (564)
T ss_pred HHHH-HHhc-CCCee----eccCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhC-CCCEEEEEEeCCCcccCC
Confidence 4321 1111 11111 1112356999999999999999999999999999999986 899999999998876543
No 19
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=2e-76 Score=718.93 Aligned_cols=531 Identities=22% Similarity=0.322 Sum_probs=432.6
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
+.++++++|++.|+++||+++||+||+.+.+|++++.+ .+|++|.||||++|+|||+||+|+||||+||++|+|||++|
T Consensus 8 ~~~~~~~~i~~~L~~~Gv~~vFgipG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n 87 (566)
T PRK07282 8 SPKSGSDLVLETLRDLGVDTIFGYPGGAVLPLYDAIYNFEGIRHILARHEQGALHEAEGYAKSTGKLGVAVVTSGPGATN 87 (566)
T ss_pred ccCcHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHhhcCCceEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHH
Confidence 35689999999999999999999999999999999965 58999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
+++||++|+.+++|||+|+|+.+....+.+.+|++||.++|+++|||+.++++++++++.+++|++.|+++|||||||+|
T Consensus 88 ~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~i 167 (566)
T PRK07282 88 AITGIADAMSDSVPLLVFTGQVARAGIGKDAFQEADIVGITMPITKYNYQIRETADIPRIITEAVHIATTGRPGPVVIDL 167 (566)
T ss_pred HHHHHHHHhhcCCCEEEEecccccccCCCCCccccChhchhcCCCceeEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++.++++....+ .. +. ........+++..+++++++|++||||+
T Consensus 168 P~Dv~~~~~~~~~~~---~~-----~~-------------------------~~~~~~~~~~~~~i~~~~~~L~~A~rPv 214 (566)
T PRK07282 168 PKDVSALETDFIYDP---EV-----NL-------------------------PSYQPTLEPNDMQIKKILKQLSKAKKPV 214 (566)
T ss_pred Chhhhhhhhcccccc---cc-----cc-------------------------cCCCCCCCCCHHHHHHHHHHHHcCCCcE
Confidence 999998776421100 00 00 0001122456788999999999999999
Q ss_pred EEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccC
Q psy14416 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFG 576 (1065)
Q Consensus 504 IlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g 576 (1065)
|++|.++.++++.+++++|+|++|+||++|+++||.+|++||+++|. ...+++++||+||.+|+++++..+..
T Consensus 215 il~G~g~~~~~a~~~l~~lae~l~~pv~tt~~gkg~ip~~hpl~~G~~G~~~~~~~~~~~~~aD~vl~lG~~l~~~~~~~ 294 (566)
T PRK07282 215 ILAGGGINYAEAATELNAFAERYQIPVVTTLLGQGTIATSHPLFLGMGGMHGSYAANIAMTEADFMINIGSRFDDRLTGN 294 (566)
T ss_pred EEECCCcCcccHHHHHHHHHHHhCCCEEeccccCCCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEECCCCCccccCC
Confidence 99999998888899999999999999999999999999999999872 45678899999999999998765433
Q ss_pred CCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchh
Q psy14416 577 RAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVI 656 (1065)
Q Consensus 577 ~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 656 (1065)
+. .+.++.++||||.|+..+++++..++.+++|+..+|++|.+.++.+ .....|.+++.+........ .
T Consensus 295 ~~-~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~------~~~~~~~~~~~~~~~~~~~~---~- 363 (566)
T PRK07282 295 PK-TFAKNAKVAHIDIDPAEIGKIIKTDIPVVGDAKKALQMLLAEPTVH------NNTEKWIEKVTKDKNRVRSY---D- 363 (566)
T ss_pred hh-hcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhccc------CChHHHHHHHHHHHHhchhc---c-
Confidence 32 3456678999999999999999899999999999999999877521 12356766654433221100 0
Q ss_pred hhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCc
Q psy14416 657 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 736 (1065)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~ 736 (1065)
....++ + +..+++ .|++.+|++++++.|+|++..
T Consensus 364 ---------------------------~~~~~l-----~---~~~~~~-----------~l~~~~~~~~ivv~d~G~~~~ 397 (566)
T PRK07282 364 ---------------------------KKERVV-----Q---PQAVIE-----------RIGELTNGDAIVVTDVGQHQM 397 (566)
T ss_pred ---------------------------CcCCCc-----C---HHHHHH-----------HHHhhcCCCeEEEECCcHHHH
Confidence 011245 6 777888 999999999999999987665
Q ss_pred ccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccc
Q psy14416 737 FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVES 816 (1065)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 816 (1065)
|...++.. ..| ..++
T Consensus 398 ~~~~~~~~-----------------------------------------------~~~-------~~~~----------- 412 (566)
T PRK07282 398 WAAQYYPY-----------------------------------------------QNE-------RQLV----------- 412 (566)
T ss_pred HHHHhccc-----------------------------------------------CCC-------CcEe-----------
Confidence 54322210 001 0111
Q ss_pred cceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEE
Q psy14416 817 GEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 896 (1065)
Q Consensus 817 ~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v 896 (1065)
++|-+|+| |+++|+++ ||+++. |+++|
T Consensus 413 ---------------~~~~~g~m----------------------------G~glpaai--Ga~lA~--------p~~~V 439 (566)
T PRK07282 413 ---------------TSGGLGTM----------------------------GFGIPAAI--GAKIAN--------PDKEV 439 (566)
T ss_pred ---------------cCCccccc----------------------------cchhhHhh--eeheec--------CCCcE
Confidence 23335555 99999999 999998 99999
Q ss_pred EEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCc
Q psy14416 897 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 976 (1065)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~ 976 (1065)
| +++|||+| +|+.++|+|+ +|+++|+++||+||+| |+.+.
T Consensus 440 v---------------------------------~i~GDG~f-~m~~~eL~Ta-----~~~~l~i~~vV~NN~~-y~~i~ 479 (566)
T PRK07282 440 I---------------------------------LFVGDGGF-QMTNQELAIL-----NIYKVPIKVVMLNNHS-LGMVR 479 (566)
T ss_pred E---------------------------------EEEcchhh-hccHHHHHHH-----HHhCCCeEEEEEeCCC-chHHH
Confidence 9 99999999 9999999999 9999999999999988 44333
Q ss_pred hhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 977 EATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
... .....+.. ......+++||.++|++||+++++++|.+||+++++ ++.. ++|+||||.++++++.
T Consensus 480 ~~q--~~~~~~~~----~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~-~~~~-~~p~lIeV~v~~~~~~ 546 (566)
T PRK07282 480 QWQ--ESFYEGRT----SESVFDTLPDFQLMAQAYGIKHYKFDNPETLAQDLE-VITE-DVPMLIEVDISRKEHV 546 (566)
T ss_pred HHH--HHHhCCCc----ccccCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHH-HhcC-CCCEEEEEEeCCcccc
Confidence 221 11111111 112223568999999999999999999999999997 4555 8999999999987764
No 20
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=2.6e-76 Score=720.47 Aligned_cols=538 Identities=21% Similarity=0.341 Sum_probs=432.7
Q ss_pred ccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc----CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccc
Q psy14416 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 342 (1065)
Q Consensus 267 ~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~----~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~ 342 (1065)
++++++|++.|+++||++|||+||+.+.+|++++.+ .+|++|.|+||++|+|||+||+|+||+|+||++|+|||++
T Consensus 2 ~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~ 81 (572)
T PRK06456 2 PTGARILVDSLKREGVKVIFGIPGLSNMQIYDAFVEDLANGELRHVLMRHEQAAAHAADGYARASGVPGVCTATSGPGTT 81 (572)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhhccCCCCeEEEeCcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHH
Confidence 368999999999999999999999999999999953 3699999999999999999999999999999999999999
Q ss_pred ccccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEe
Q psy14416 343 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLD 422 (1065)
Q Consensus 343 N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~ 422 (1065)
|+++||++|+.+++|||+|+|+.+....+++.+|++||..+|+++|||+.++++++++++.+++|++.|+++++|||||+
T Consensus 82 N~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~i~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~ 161 (572)
T PRK06456 82 NLVTGLITAYWDSSPVIAITGQVPRSVMGKMAFQEADAMGVFENVTKYVIGIKRIDEIPQWIKNAFYIATTGRPGPVVID 161 (572)
T ss_pred HHHHHHHHHHhhCCCEEEEecCCCccccCCCCccccchhhhhhccceeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCc
Q psy14416 423 FPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAP 502 (1065)
Q Consensus 423 iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrP 502 (1065)
||.|++.++++.......+.. + ...+....++++.+++++++|++||||
T Consensus 162 iP~Dv~~~~~~~~~~~~~~~~-------~------------------------~~~~~~~~~~~~~~~~~~~~L~~A~rP 210 (572)
T PRK06456 162 IPRDIFYEKMEEIKWPEKPLV-------K------------------------GYRDFPTRIDRLALKKAAEILINAERP 210 (572)
T ss_pred cChhHhhcccccccccccccc-------c------------------------CCCCCCCCCCHHHHHHHHHHHHhCCCc
Confidence 999998877643111000000 0 001112336778899999999999999
Q ss_pred EEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCcccccccc
Q psy14416 503 LVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHF 575 (1065)
Q Consensus 503 vIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~ 575 (1065)
+|++|.++.++++.+++++|+|++|+||++|+++||++|++||+++|. ....++++||+||.+|+++.+..+.
T Consensus 211 vil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~i~~~hp~~~G~~g~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~ 290 (572)
T PRK06456 211 IILVGTGVVWSNATPEVLELAELLHIPIVSTFPGKTAIPHDHPLYFGPMGYYGRAEASMAALESDAMLVVGARFSDRTFT 290 (572)
T ss_pred EEEECCCCcccchHHHHHHHHHHhCCCEEEcCccCcCCCCCCccccccCCCCCCHHHHHHHHhCCEEEEECCCCchhhcc
Confidence 999999998888899999999999999999999999999999999873 3556788999999999999876554
Q ss_pred CCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccch
Q psy14416 576 GRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPV 655 (1065)
Q Consensus 576 g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 655 (1065)
.+.....++.++||||.|+..+++++..+..+++|+..+|++|.+.+..... ......|.+.++...+...+...+
T Consensus 291 ~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~- 366 (572)
T PRK06456 291 SYDEMVETRKKFIMVNIDPTDGEKAIKVDVGIYGNAKIILRELIKAITELGQ---KRDRSAWLKRVKEYKEYYSQFYYT- 366 (572)
T ss_pred ccccccCCCCeEEEEeCChHHhCCccCCCeEEecCHHHHHHHHHHHhhhccc---ccccHHHHHHHHHHHHhchhhccc-
Confidence 4432122356899999999999999999999999999999999988752110 012245766655443322111100
Q ss_pred hhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcC
Q psy14416 656 ILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG 735 (1065)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~ 735 (1065)
....++ + +..+++ .|.+.+|++++|+.|+|++.
T Consensus 367 ----------------------------~~~~~i-----~---~~~~~~-----------~l~~~l~~~~ii~~d~g~~~ 399 (572)
T PRK06456 367 ----------------------------EENGKL-----K---PWKIMK-----------TIRQALPRDAIVTTGVGQHQ 399 (572)
T ss_pred ----------------------------ccCCCc-----C---HHHHHH-----------HHHHhCCCCEEEEECCcHHH
Confidence 011245 6 777888 99999999999999999876
Q ss_pred cccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccc
Q psy14416 736 GFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVE 815 (1065)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 815 (1065)
.|..+++.. ..| ..++
T Consensus 400 ~~~~~~~~~-----------------------------------------------~~p-------~~~~---------- 415 (572)
T PRK06456 400 MWAEVFWEV-----------------------------------------------LEP-------RTFL---------- 415 (572)
T ss_pred HHHHHhcCc-----------------------------------------------CCC-------CcEE----------
Confidence 665433221 000 0000
Q ss_pred ccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEE
Q psy14416 816 SGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVIL 895 (1065)
Q Consensus 816 ~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 895 (1065)
+++-+|+| |+++++++ ||+++. |+++
T Consensus 416 ----------------~~~~~g~m----------------------------G~glpaAi--Ga~la~--------p~~~ 441 (572)
T PRK06456 416 ----------------TSSGMGTM----------------------------GFGLPAAM--GAKLAR--------PDKV 441 (572)
T ss_pred ----------------cCCCcccc----------------------------cchhHHHH--HHHHhC--------CCCe
Confidence 12224555 99999998 999998 9999
Q ss_pred EEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCC
Q psy14416 896 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 975 (1065)
Q Consensus 896 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~ 975 (1065)
|+ +++|||+| +|+.++|+|+ +|+++|+++||+||+| |+.+
T Consensus 442 vv---------------------------------~i~GDG~f-~m~~~eL~Ta-----~~~~l~i~ivV~NN~~-yg~i 481 (572)
T PRK06456 442 VV---------------------------------DLDGDGSF-LMTGTNLATA-----VDEHIPVISVIFDNRT-LGLV 481 (572)
T ss_pred EE---------------------------------EEEccchH-hcchHHHHHH-----HHhCCCeEEEEEECCc-hHHH
Confidence 99 99999999 9999999999 9999999999999988 4433
Q ss_pred chhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 976 DEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
.... .....+. .......+++||.++|++||+++++|+|.+||+++|+++++. ++|+||||.+++++..
T Consensus 482 ~~~q--~~~~~~~----~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~eL~~al~~a~~~-~~p~lIev~v~~~~~~ 550 (572)
T PRK06456 482 RQVQ--DLFFGKR----IVGVDYGPSPDFVKLAEAFGALGFNVTTYEDIEKSLKSAIKE-DIPAVIRVPVDKEELA 550 (572)
T ss_pred HHHH--HHhhCCC----cccccCCCCCCHHHHHHHCCCeeEEeCCHHHHHHHHHHHHhC-CCCEEEEEEeCccccc
Confidence 2211 1111111 111222356999999999999999999999999999999976 8999999999987644
No 21
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=3.3e-76 Score=716.53 Aligned_cols=530 Identities=23% Similarity=0.319 Sum_probs=433.7
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 345 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~ 345 (1065)
.++++++|++.|+++||++|||+||+.+.++++++.+++|++|.++||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 14 ~~~~a~~l~~~L~~~GV~~vFGipG~~~~~l~dal~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~~ 93 (570)
T PRK06725 14 EVTGAGHVIQCLKKLGVTTVFGYPGGAILPVYDALYESGLKHILTRHEQAAIHAAEGYARASGKVGVVFATSGPGATNLV 93 (570)
T ss_pred cccHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHhcCCcEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHH
Confidence 57899999999999999999999999999999999878899999999999999999999999999999999999999999
Q ss_pred cccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecCh
Q psy14416 346 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPA 425 (1065)
Q Consensus 346 ~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~ 425 (1065)
+||++|+.+++|||+|+|+.+....+.+.+|++||..+++++|||++++.+++++.+.+++|++.|.++|+|||||+||.
T Consensus 94 ~gla~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 173 (570)
T PRK06725 94 TGLADAYMDSIPLVVITGQVATPLIGKDGFQEADVVGITVPVTKHNYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPK 173 (570)
T ss_pred HHHHHHhhcCcCEEEEecCCCcccccCCCCcccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q psy14416 426 NLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505 (1065)
Q Consensus 426 Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvIl 505 (1065)
|++.++++.. .. .+... ........++++.+++++++|++||||+|+
T Consensus 174 Dv~~~~~~~~-~~-~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~L~~A~rPvIl 220 (570)
T PRK06725 174 DVQNEKVTSF-YN-EVVEI-------------------------------PGYKPEPRPDSMKLREVAKAISKAKRPLLY 220 (570)
T ss_pred chhhcccccc-cC-ccccc-------------------------------ccCCCCCCCCHHHHHHHHHHHHcCCCcEEE
Confidence 9987766421 10 00000 000112346788899999999999999999
Q ss_pred EccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccCCC
Q psy14416 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFGRA 578 (1065)
Q Consensus 506 vG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g~~ 578 (1065)
+|.++.++++.++|.+|||++++||++|+++||.+|++||+++|. ...+++++|||||.+|+++++..+..+.
T Consensus 221 ~G~g~~~~~a~~~l~~lae~~~~PV~tt~~~kg~~p~~hp~~~G~~G~~~~~~~~~~l~~aDlil~vG~~~~~~~~~~~~ 300 (570)
T PRK06725 221 IGGGVIHSGGSEELIEFARENRIPVVSTLMGLGAYPPGDPLFLGMLGMHGTYAANMAVTECDLLLALGVRFDDRVTGKLE 300 (570)
T ss_pred ECCCccccchHHHHHHHHHHhCCCEEECCccCcCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEeCCCCCccccCccc
Confidence 999998888899999999999999999999999999999999873 3567889999999999999876554332
Q ss_pred ccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhh
Q psy14416 579 PRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILV 658 (1065)
Q Consensus 579 ~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~ 658 (1065)
.+.++.++||||.|+..+++++..++.+.+|+..+|++|.+.++. .....|.++++...+.......
T Consensus 301 -~~~~~~~~i~id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~----- 367 (570)
T PRK06725 301 -LFSPHSKKVHIDIDPSEFHKNVAVEYPVVGDVKKALHMLLHMSIH-------TQTDEWLQKVKTWKEEYPLSYK----- 367 (570)
T ss_pred -ccCCCCeEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhccc-------cCcHHHHHHHHHHHHhChhhhc-----
Confidence 245667899999999999999999999999999999999887752 1234576655543332111100
Q ss_pred hhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCccc
Q psy14416 659 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 738 (1065)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~~ 738 (1065)
....++ + +..+++ .|.+.+|+|.+++.|+|++..|.
T Consensus 368 -------------------------~~~~~l-----~---~~~~~~-----------~l~~~l~~d~iiv~d~g~~~~~~ 403 (570)
T PRK06725 368 -------------------------QKESEL-----K---PQHVIN-----------LVSELTNGEAIVTTEVGQHQMWA 403 (570)
T ss_pred -------------------------ccCCCc-----C---HHHHHH-----------HHHhhCCCCcEEEeCCcHHHHHH
Confidence 011245 6 677888 99999999999999998766554
Q ss_pred ccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccccc
Q psy14416 739 ETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGE 818 (1065)
Q Consensus 739 ~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 818 (1065)
..++.. ..| +.++
T Consensus 404 ~~~~~~-----------------------------------------------~~p-------~~~~------------- 416 (570)
T PRK06725 404 AHFYKA-----------------------------------------------KNP-------RTFL------------- 416 (570)
T ss_pred HHhccc-----------------------------------------------cCC-------CeEE-------------
Confidence 432211 001 0011
Q ss_pred eeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEEE
Q psy14416 819 VTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 898 (1065)
Q Consensus 819 ~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 898 (1065)
.+|-+|+| |+++|+++ ||+++. |+++|+
T Consensus 417 -------------~~~~~gsm----------------------------G~~lp~ai--Ga~lA~--------p~~~vv- 444 (570)
T PRK06725 417 -------------TSGGLGTM----------------------------GFGFPAAI--GAQLAK--------EEELVI- 444 (570)
T ss_pred -------------ccCCcccc----------------------------cchhhHHH--hhHhhc--------CCCeEE-
Confidence 12224444 99999998 999998 999999
Q ss_pred ccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchh
Q psy14416 899 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEA 978 (1065)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~ 978 (1065)
+++|||+| +|+.++++|+ +++++|+++||+||++ |+.....
T Consensus 445 --------------------------------~i~GDG~f-~~~~~el~Ta-----~~~~lpi~~vV~NN~~-~~~~~~~ 485 (570)
T PRK06725 445 --------------------------------CIAGDASF-QMNIQELQTI-----AENNIPVKVFIINNKF-LGMVRQW 485 (570)
T ss_pred --------------------------------EEEecchh-hccHHHHHHH-----HHhCCCeEEEEEECCc-cHHHHHH
Confidence 99999999 9999999999 9999999999999977 4433221
Q ss_pred hHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 979 TYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 979 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
......+. ......+++||.++|++||+++++|+|.+||+++++++++. ++|+||||.+++++..
T Consensus 486 --q~~~~~~~-----~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~-~~p~liev~id~~~~~ 550 (570)
T PRK06725 486 --QEMFYENR-----LSESKIGSPDFVKVAEAYGVKGLRATNSTEAKQVMLEAFAH-EGPVVVDFCVEEGENV 550 (570)
T ss_pred --HHHhcCCc-----cccCcCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhC-CCCEEEEEEeCCcccc
Confidence 11111111 11122346999999999999999999999999999999987 8999999999987754
No 22
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=100.00 E-value=2.6e-76 Score=717.85 Aligned_cols=536 Identities=24% Similarity=0.327 Sum_probs=432.9
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
.+++++++|++.|+++||++|||+||+++.+|++++.++ +|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus 6 ~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N 85 (557)
T PRK08199 6 RARTGGQILVDALRANGVERVFCVPGESYLAVLDALHDETDIRVIVCRQEGGAAMMAEAYGKLTGRPGICFVTRGPGATN 85 (557)
T ss_pred ccCcHHHHHHHHHHHcCCCEEEeCCCcchhHHHHHhhccCCCcEEEeccHHHHHHHHHHHHHhcCCCEEEEeCCCccHHH
Confidence 457899999999999999999999999999999999765 5999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
+++||++|+.+++|||+|+|+++.++.+++.+|++||..+|+++|||+.++.+++++++.++||++.|.++|+|||||+|
T Consensus 86 ~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~i 165 (557)
T PRK08199 86 ASIGVHTAFQDSTPMILFVGQVARDFREREAFQEIDYRRMFGPMAKWVAEIDDAARIPELVSRAFHVATSGRPGPVVLAL 165 (557)
T ss_pred HHHHHHHHhhcCCCEEEEecCCccccCCCCcccccCHHHhhhhhhceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++.++.+..... ........++++.+++++++|++||||+
T Consensus 166 P~dl~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~i~~~~~~L~~A~rPv 208 (557)
T PRK08199 166 PEDVLSETAEVPDAP-------------------------------------PYRRVAAAPGAADLARLAELLARAERPL 208 (557)
T ss_pred CHhHhhCcccccccC-------------------------------------CcCCCCCCCCHHHHHHHHHHHHhCCCCE
Confidence 999987765322110 0011223467788999999999999999
Q ss_pred EEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccC
Q psy14416 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFG 576 (1065)
Q Consensus 504 IlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g 576 (1065)
|++|.++.++++.+++++|+|++|+||++|+++||.+|++||+++|. ...+.+++||+||.+|+++++..+..
T Consensus 209 i~~G~g~~~~~a~~~l~~lae~~~~pV~tt~~~kg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~ 288 (557)
T PRK08199 209 VILGGSGWTEAAVADLRAFAERWGLPVACAFRRQDLFDNRHPNYAGDLGLGINPALAARIREADLVLAVGTRLGEVTTQG 288 (557)
T ss_pred EEECCCcCchhHHHHHHHHHHHhCCCEEEcCCcCCCCCCCChhhccCCcCcCCHHHHHHHHhCCEEEEeCCCCccccccc
Confidence 99999998888889999999999999999999999999999999872 35567889999999999998765543
Q ss_pred CCcc--ccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccc
Q psy14416 577 RAPR--FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLP 654 (1065)
Q Consensus 577 ~~~~--~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 654 (1065)
+... ..++.++||||.|+..+++.+..++.|++|+..+|++|.+.++. ....|...++..++.+.+..+.
T Consensus 289 ~~~~~~~~~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 360 (557)
T PRK08199 289 YTLLDIPVPRQTLVHVHPDAEELGRVYRPDLAIVADPAAFAAALAALEPP--------ASPAWAEWTAAAHADYLAWSAP 360 (557)
T ss_pred cccccccCCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHhcccc--------cchhHHHHHHHHHHHHHhhccc
Confidence 3211 12456899999999999999999999999999999999875431 1245665544433332222111
Q ss_pred hhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCc
Q psy14416 655 VILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIY 734 (1065)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~ 734 (1065)
. ....++ + +..+++ .|.+.+|++.+++.|+|++
T Consensus 361 ~----------------------------~~~~~~-----~---~~~~~~-----------~l~~~l~~~~ii~~d~g~~ 393 (557)
T PRK08199 361 L----------------------------PGPGAV-----Q---LGEVMA-----------WLRERLPADAIITNGAGNY 393 (557)
T ss_pred c----------------------------CCCCCc-----C---HHHHHH-----------HHHHhCCCCeEEEECChHH
Confidence 1 011245 6 667888 9999999999999999876
Q ss_pred CcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccc
Q psy14416 735 GGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIV 814 (1065)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 814 (1065)
..|..+++.. ..| +.++
T Consensus 394 ~~~~~~~~~~-----------------------------------------------~~~-------~~~~--------- 410 (557)
T PRK08199 394 ATWLHRFFRF-----------------------------------------------RRY-------RTQL--------- 410 (557)
T ss_pred HHHHHHhcCc-----------------------------------------------CCC-------CeEE---------
Confidence 6664432211 000 0000
Q ss_pred cccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccE
Q psy14416 815 ESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVI 894 (1065)
Q Consensus 815 ~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~ 894 (1065)
. + .+ +++|+++|+++ |++++. |++
T Consensus 411 ----------------~-~-~~----------------------------g~mG~glpaai--Ga~la~--------p~~ 434 (557)
T PRK08199 411 ----------------A-P-TS----------------------------GSMGYGLPAAI--AAKLLF--------PER 434 (557)
T ss_pred ----------------C-C-CC----------------------------ccccchHHHHH--HHHHhC--------CCC
Confidence 0 0 02 34499999988 999998 999
Q ss_pred EEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCC
Q psy14416 895 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 974 (1065)
Q Consensus 895 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~ 974 (1065)
+|+ +++|||+| +|+.++++|+ +++++|+++||+||++ |+.
T Consensus 435 ~vv---------------------------------~i~GDGsf-~~~~~el~ta-----~~~~l~i~~vv~nN~~-~~~ 474 (557)
T PRK08199 435 TVV---------------------------------AFAGDGCF-LMNGQELATA-----VQYGLPIIVIVVNNGM-YGT 474 (557)
T ss_pred cEE---------------------------------EEEcchHh-hccHHHHHHH-----HHhCCCeEEEEEeCCc-chH
Confidence 999 99999999 9999999999 9999999999999976 554
Q ss_pred CchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCcc
Q psy14416 975 FDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKPQ 1054 (1065)
Q Consensus 975 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~~ 1054 (1065)
+.... .....+... ....+.+||.++|++||+.+++|++.+||+++++++++. ++|+||||.+++++.....
T Consensus 475 ~~~~~--~~~~~~~~~-----~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~-~gp~li~v~~~~~~~~~~~ 546 (557)
T PRK08199 475 IRMHQ--EREYPGRVS-----GTDLTNPDFAALARAYGGHGETVERTEDFAPAFERALAS-GKPALIEIRIDPEAITPTA 546 (557)
T ss_pred HHHHH--HHhcCCccc-----cccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhC-CCCEEEEEEeCHHHcCCCC
Confidence 43321 111112111 112245899999999999999999999999999999976 8999999999987654333
Q ss_pred hhhhh
Q psy14416 1055 NFSWL 1059 (1065)
Q Consensus 1055 ~~~~~ 1059 (1065)
.+.++
T Consensus 547 ~~~~~ 551 (557)
T PRK08199 547 TLSQI 551 (557)
T ss_pred CHHHH
Confidence 34443
No 23
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=100.00 E-value=3.1e-76 Score=718.60 Aligned_cols=544 Identities=35% Similarity=0.614 Sum_probs=434.4
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
..++++++|++.|+++||++|||+||..+.++.+++++++|++|.|+||++|+|||+||+|+||+|+||++|+|||++|+
T Consensus 8 ~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~~~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~ 87 (569)
T PRK09259 8 QLTDGFHLVIDALKLNGIDTIYGVVGIPITDLARLAQAEGIRYIGFRHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNG 87 (569)
T ss_pred CCCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhCCCCEEeeCCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHH
Confidence 35689999999999999999999999999999988887889999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCC--CCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEe
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDH--EGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLD 422 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~--~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~ 422 (1065)
++||++|+.+++|||+|+|+.+.+. .+++.+|++||.++|+++|||++++.+++++++.+++|++.|+++|||||||+
T Consensus 88 l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~~tk~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~ 167 (569)
T PRK09259 88 LTALANATTNCFPMIMISGSSEREIVDLQQGDYEELDQLNAAKPFCKAAFRVNRAEDIGIGVARAIRTAVSGRPGGVYLD 167 (569)
T ss_pred HHHHHHHHhcCCCEEEEEccCCcccccccCCCccccchhhhhhhheeeeEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEE
Confidence 9999999999999999999998764 35788999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCc
Q psy14416 423 FPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAP 502 (1065)
Q Consensus 423 iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrP 502 (1065)
||.|++.++++..... .+. |+ .........++++.+++++++|++||||
T Consensus 168 iP~Dv~~~~~~~~~~~-~~~-------~~-----------------------~~~~~~~~~~~~~~l~~~~~~L~~AkrP 216 (569)
T PRK09259 168 LPAKVLAQTMDADEAL-TSL-------VK-----------------------VVDPAPAQLPAPEAVDRALDLLKKAKRP 216 (569)
T ss_pred eCHHHhhCcccccccc-ccc-------cc-----------------------ccCCCCCCCCCHHHHHHHHHHHHhCCCC
Confidence 9999998876532110 000 00 0001122346788999999999999999
Q ss_pred EEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHHHHhhhcCCCEEEEeCCccccccccCCCcccc
Q psy14416 503 LVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWILHFGRAPRFK 582 (1065)
Q Consensus 503 vIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~~~~~g~~~~~~ 582 (1065)
+|++|.++.++++.+++.+|||++++||++|+++||++|++||+++|...+.++++||+||.+|+++++....++...+.
T Consensus 217 vIi~G~g~~~~~a~~~l~~lae~l~iPV~tt~~gkg~~~e~hpl~~G~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~ 296 (569)
T PRK09259 217 LIILGKGAAYAQADEQIREFVEKTGIPFLPMSMAKGLLPDTHPQSAAAARSLALANADVVLLVGARLNWLLSHGKGKTWG 296 (569)
T ss_pred EEEECcCccccChHHHHHHHHHHHCCCEEecccccccCCCCChhhhhHHHHHHHhcCCEEEEeCCCCchhcccCchhccC
Confidence 99999999888889999999999999999999999999999999999888888999999999999998765544433355
Q ss_pred CCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhhhhcc
Q psy14416 583 SNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILVIVNN 662 (1065)
Q Consensus 583 ~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (1065)
++.++||||.|+..++..++.+..+.+|+..+|++|.+.++.. .......|.++++...........+..
T Consensus 297 ~~~~ii~Id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~~----~~~~~~~w~~~~~~~~~~~~~~~~~~~------ 366 (569)
T PRK09259 297 ADKKFIQIDIEPQEIDSNRPIAAPVVGDIGSVMQALLAGLKQN----TFKAPAEWLDALAERKEKNAAKMAEKL------ 366 (569)
T ss_pred CCCcEEEecCChHHhcCCccCceeEecCHHHHHHHHHHHhhhc----cccchHHHHHHHHHHHHhChhhhhhhh------
Confidence 6678999999999999999999999999999999999987521 012235677666544333222211110
Q ss_pred CCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCC--CcEEEEECCCCcCccccc
Q psy14416 663 NGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLP--VILVIVNNNGIYGGFDET 740 (1065)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP--~d~ilv~d~G~~~~~~~~ 740 (1065)
. ....|+ + +..+++ .|++.++ +|.+++.|+|++..|...
T Consensus 367 ------------~--------~~~~~l-----~---~~~~~~-----------~l~~~l~~~~d~iv~~~~~~~~~~~~~ 407 (569)
T PRK09259 367 ------------S--------TDTQPM-----N---FYNALG-----------AIRDVLKENPDIYLVNEGANTLDLARN 407 (569)
T ss_pred ------------c--------CCCCCc-----C---HHHHHH-----------HHHHHhCCCCCEEEEeCchHHHHHHHH
Confidence 0 012346 6 677888 9999994 588888887654333221
Q ss_pred chhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccccccee
Q psy14416 741 TYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVT 820 (1065)
Q Consensus 741 ~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 820 (1065)
++. ...| +.++
T Consensus 408 ~~~-----------------------------------------------~~~p-------~~~~--------------- 418 (569)
T PRK09259 408 IID-----------------------------------------------MYKP-------RHRL--------------- 418 (569)
T ss_pred hcc-----------------------------------------------cCCC-------CceE---------------
Confidence 111 0011 0000
Q ss_pred eccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEEEcc
Q psy14416 821 TVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNN 900 (1065)
Q Consensus 821 ~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 900 (1065)
++|.+|+| |+++|+++ ||+++ ++++||
T Consensus 419 -----------~~~~~gsm----------------------------G~glpaai--Ga~la---------~~~~vv--- 445 (569)
T PRK09259 419 -----------DCGTWGVM----------------------------GIGMGYAI--AAAVE---------TGKPVV--- 445 (569)
T ss_pred -----------eCCCCccc----------------------------cccHHHHH--HHHhc---------CCCcEE---
Confidence 12334555 99999998 88887 357799
Q ss_pred CcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhH
Q psy14416 901 NGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATY 980 (1065)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~ 980 (1065)
+++|||+| +|+.+|++|+ +|+++|+++||+||+|++... .
T Consensus 446 ------------------------------~i~GDG~f-~m~~~EL~Ta-----~r~~lpi~~vV~NN~~~~~~~----~ 485 (569)
T PRK09259 446 ------------------------------AIEGDSAF-GFSGMEVETI-----CRYNLPVTVVIFNNGGIYRGD----D 485 (569)
T ss_pred ------------------------------EEecCccc-cccHHHHHHH-----HHcCCCEEEEEEeChhHHHHH----H
Confidence 99999999 9999999999 999999999999999852211 1
Q ss_pred hHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCcch
Q psy14416 981 ASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKPQN 1055 (1065)
Q Consensus 981 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~ 1055 (1065)
........ .......+++||.++|++||+++++|++.+||+++|+++++. ++|+||||.+++++.++..+
T Consensus 486 ~~~~~~~~----~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~-~~p~lIev~id~~~~~~~~~ 555 (569)
T PRK09259 486 VNLSGAGD----PSPTVLVHHARYDKMMEAFGGVGYNVTTPDELRHALTEAIAS-GKPTLINVVIDPAAGTESGH 555 (569)
T ss_pred HHhhcCCC----ccccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhC-CCCEEEEEEECCCCCCCccc
Confidence 11101011 112334467999999999999999999999999999999986 89999999999988877633
No 24
>PLN02470 acetolactate synthase
Probab=100.00 E-value=4.2e-76 Score=719.17 Aligned_cols=542 Identities=23% Similarity=0.312 Sum_probs=429.4
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
..++++++|++.|+++||++|||+||+.+.+|++++.++ +|++|.+|||++|+|||+||+|+||||+||++|+|||++|
T Consensus 11 ~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N 90 (585)
T PLN02470 11 EPRKGADILVEALEREGVDTVFAYPGGASMEIHQALTRSNCIRNVLCRHEQGEVFAAEGYAKASGKVGVCIATSGPGATN 90 (585)
T ss_pred ccccHHHHHHHHHHHcCCCEEEEcCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHH
Confidence 357899999999999999999999999999999999654 7999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
+++||++|+.+++|||+|+|+.+....+.+.+|++||..+|+++|||++++.+++++++.+++|++.|.++|+|||||+|
T Consensus 91 ~l~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~i 170 (585)
T PLN02470 91 LVTGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRVIREAFFLASSGRPGPVLVDI 170 (585)
T ss_pred HHHHHHHHHhcCCcEEEEecCCChhhcCCCcCcccchhhhhhhheEEEEEcCCHHHHHHHHHHHHHHhcCCCCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++.+++...... +... . + ........++.+.+++++++|.+||||+
T Consensus 171 P~Dv~~~~~~~~~~~--~~~~-~--~--------------------------~~~~~~~~~~~~~i~~~~~~L~~A~rPv 219 (585)
T PLN02470 171 PKDIQQQLAVPNWNQ--PMKL-P--G--------------------------YLSRLPKPPEKSQLEQIVRLISESKRPV 219 (585)
T ss_pred cCchhhhhccccccc--cccc-c--c--------------------------cCCCCCCCCCHHHHHHHHHHHHcCCCCE
Confidence 999987764321000 0000 0 0 0011122456788999999999999999
Q ss_pred EEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccC
Q psy14416 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFG 576 (1065)
Q Consensus 504 IlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g 576 (1065)
|++|.++. ++.++|++|+|++++||++|+++||.+|++||+++|. ..++++++||+||.+|+++++..+..
T Consensus 220 I~~G~g~~--~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hpl~~G~~G~~~~~~~~~~~~~aDlvl~lG~~l~~~~~~~ 297 (585)
T PLN02470 220 VYVGGGCL--NSSEELREFVELTGIPVASTLMGLGAFPASDELSLQMLGMHGTVYANYAVDSADLLLAFGVRFDDRVTGK 297 (585)
T ss_pred EEECCChh--hhHHHHHHHHHHhCCCEEEccCccccCCCCCcccccCCCCCCCHHHHHHHHhCCEEEEECCCCcccccCC
Confidence 99999886 5578999999999999999999999999999999873 34578899999999999988765433
Q ss_pred CCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchh
Q psy14416 577 RAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVI 656 (1065)
Q Consensus 577 ~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 656 (1065)
+. .+.++.++||||.|+..+++.+..++.|++|+..+|++|.+.+...... ......|.+.+.+..++.....+
T Consensus 298 ~~-~~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--- 371 (585)
T PLN02470 298 LE-AFASRASIVHIDIDPAEIGKNKQPHVSVCADVKLALQGLNKLLEERKAK--RPDFSAWRAELDEQKEKFPLSYP--- 371 (585)
T ss_pred hh-hcCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhhhcccc--ccchHHHHHHHHHHHHhChhccc---
Confidence 32 2445678999999999999999999999999999999999887531100 01224566555443322111100
Q ss_pred hhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCc
Q psy14416 657 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 736 (1065)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~ 736 (1065)
....++ + +..+++ .|.+.+|+|.+++.|.|++..
T Consensus 372 ---------------------------~~~~~l-----~---~~~~~~-----------~l~~~~~~d~iv~~d~G~~~~ 405 (585)
T PLN02470 372 ---------------------------TFGDAI-----P---PQYAIQ-----------VLDELTDGNAIISTGVGQHQM 405 (585)
T ss_pred ---------------------------CCCCCc-----C---HHHHHH-----------HHHhhCCCCEEEEECCcHHHH
Confidence 011245 6 667888 999999999999999987666
Q ss_pred ccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccc
Q psy14416 737 FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVES 816 (1065)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 816 (1065)
|..+++.. ..| ..++.
T Consensus 406 ~~~~~~~~-----------------------------------------------~~p-------~~~~~---------- 421 (585)
T PLN02470 406 WAAQWYKY-----------------------------------------------KEP-------RRWLT---------- 421 (585)
T ss_pred HHHHhccc-----------------------------------------------CCC-------CeEEc----------
Confidence 64433221 001 00111
Q ss_pred cceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEE
Q psy14416 817 GEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 896 (1065)
Q Consensus 817 ~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v 896 (1065)
++-+|+| |+++++++ ||+++. |+++|
T Consensus 422 ----------------~~~~g~m----------------------------G~glpaai--Ga~la~--------p~~~V 447 (585)
T PLN02470 422 ----------------SGGLGAM----------------------------GFGLPAAI--GAAAAN--------PDAIV 447 (585)
T ss_pred ----------------CCccccc----------------------------cchHHHHH--HHHHhC--------CCCcE
Confidence 2224444 99999998 999998 99999
Q ss_pred EEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCc
Q psy14416 897 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 976 (1065)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~ 976 (1065)
+ +++|||+| +|+.++|+|+ +|+++|+++||+||+| |+.+.
T Consensus 448 v---------------------------------~i~GDG~f-~m~~~eL~Ta-----~~~~l~v~ivV~NN~~-yg~i~ 487 (585)
T PLN02470 448 V---------------------------------DIDGDGSF-IMNIQELATI-----HVENLPVKIMVLNNQH-LGMVV 487 (585)
T ss_pred E---------------------------------EEEccchh-hccHHHHHHH-----HHhCCCeEEEEEeCCc-chHHH
Confidence 9 99999999 9999999999 9999999999999987 44333
Q ss_pred hhhHhHHhhcCCcc-cC--CCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 977 EATYASIVESGEVT-TV--SPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 977 ~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
+.+ .....+... .. .+.....+.+||.++|++||+++++|+|.+||+++|+++++. ++|.||||.++++++..
T Consensus 488 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~~~~el~~al~~a~~~-~~p~lieV~i~~~~~~~ 563 (585)
T PLN02470 488 QWE--DRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVTRKSDLREAIQKMLDT-PGPYLLDVIVPHQEHVL 563 (585)
T ss_pred HHH--HHHhCCceeeeecCccccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhC-CCCEEEEEEeCCccCcC
Confidence 221 111111100 00 011111123799999999999999999999999999999986 89999999999877553
No 25
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=6.9e-76 Score=716.96 Aligned_cols=543 Identities=21% Similarity=0.325 Sum_probs=433.5
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
++++++++|++.|+++||+++||+||+++++|++++.+ .+|++|.++||++|+|||+||+|+||+|+||++|+|||++|
T Consensus 2 ~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N 81 (574)
T PRK06882 2 KKLSGAEMVVQSLRDEGVEYVFGYPGGSVLDIYDAIHTLGGIEHVLVRHEQAAVHMADGYARSTGKVGCVLVTSGPGATN 81 (574)
T ss_pred CcccHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhcCCCeEEEeccHHHHHHHHHHHHHhhCCCeEEEECCCccHHH
Confidence 34789999999999999999999999999999999976 47999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
++++|++|+.+++|||+|+|+++....+++++|++||..+|+++|||+.++.+++++.+.+++|++.|.++++|||||+|
T Consensus 82 ~l~~i~~A~~~~~Pvlvi~G~~~~~~~~~~~~q~~d~~~l~~~vtk~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~i 161 (574)
T PRK06882 82 AITGIATAYTDSVPLVILSGQVPSNLIGTDAFQECDMLGISRPVVKHSFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDI 161 (574)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCCcccccchhhhhhcccceEEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++.++.+.....+.+.. + ........++++.+++++++|.+||||+
T Consensus 162 P~Dv~~~~~~~~~~~~~~~~------~-------------------------~~~~~~~~~~~~~i~~~~~~l~~A~rPv 210 (574)
T PRK06882 162 PKDMVNPANKFTYEYPEEVS------L-------------------------RSYNPTVQGHKGQIKKALKALLVAKKPV 210 (574)
T ss_pred CHHHhhhhcccccccCcccc------c-------------------------ccCCCCCCCCHHHHHHHHHHHHhCCCCE
Confidence 99998655431100000000 0 0001112346788999999999999999
Q ss_pred EEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccC
Q psy14416 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFG 576 (1065)
Q Consensus 504 IlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g 576 (1065)
|++|.++.++++.++|++|+|++|+||++|+++||.+|++||+++|. ...+++++|||||.+|+++++..+..
T Consensus 211 i~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~ 290 (574)
T PRK06882 211 LFVGGGVITAECSEQLTQFAQKLNLPVTSSLMGLGAYPSTDKQFLGMLGMHGTYEANNAMHESDLILGIGVRFDDRTTNN 290 (574)
T ss_pred EEECCCccccchHHHHHHHHHHhCCCEEEcCccCcCCCCCChhhcCCCcccccHHHHHHHHhCCEEEEECCCCCccccCc
Confidence 99999998888889999999999999999999999999999999873 34568889999999999998876544
Q ss_pred CCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchh
Q psy14416 577 RAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVI 656 (1065)
Q Consensus 577 ~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 656 (1065)
+.. +.++.++||||.|+..+++.++.++.|.+|+..+|++|.+.+..+...........|.+.++++........ .
T Consensus 291 ~~~-~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~- 366 (574)
T PRK06882 291 LAK-YCPNAKVIHIDIDPTSISKNVPAYIPIVGSAKNVLEEFLSLLEEENLAKSQTDLTAWWQQINEWKAKKCLEF--D- 366 (574)
T ss_pred hhh-cCCCCeEEEEECCHHHhcCccCCceEEecCHHHHHHHHHHHhhhhcccccccccHHHHHHHHHHHHhChhhh--c-
Confidence 432 456678999999999999999999999999999999999877521100001123456665543322111000 0
Q ss_pred hhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCc
Q psy14416 657 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 736 (1065)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~ 736 (1065)
....++ + +..+++ .|.+.+|++.+++.|+|++..
T Consensus 367 ---------------------------~~~~~i-----~---~~~~~~-----------~l~~~l~~~~ii~~d~g~~~~ 400 (574)
T PRK06882 367 ---------------------------RTSDVI-----K---PQQVVE-----------AIYRLTNGDAYVASDVGQHQM 400 (574)
T ss_pred ---------------------------cCCCCc-----C---HHHHHH-----------HHHhhcCCCeEEEecCchhHH
Confidence 001235 5 667888 999999999999999987666
Q ss_pred ccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccc
Q psy14416 737 FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVES 816 (1065)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 816 (1065)
|..+++.. ..| +.++
T Consensus 401 ~~~~~~~~-----------------------------------------------~~p-------~~~~----------- 415 (574)
T PRK06882 401 FAALHYPF-----------------------------------------------DKP-------RRWI----------- 415 (574)
T ss_pred HHHHhccc-----------------------------------------------cCC-------CcEE-----------
Confidence 64432211 001 1111
Q ss_pred cceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEE
Q psy14416 817 GEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 896 (1065)
Q Consensus 817 ~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v 896 (1065)
|+|-+|+| |+++|+++ |++++. |+++|
T Consensus 416 ---------------~~~~~g~m----------------------------G~~lp~ai--Ga~la~--------p~~~v 442 (574)
T PRK06882 416 ---------------NSGGAGTM----------------------------GFGLPAAI--GVKFAH--------PEATV 442 (574)
T ss_pred ---------------eCCCcccc----------------------------cchhHHHH--HHHhhc--------CCCcE
Confidence 23445666 99999988 999998 89999
Q ss_pred EEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCc
Q psy14416 897 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 976 (1065)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~ 976 (1065)
| +++|||+| +|+.++|+|+ +++++|+++||+||+| |+.+.
T Consensus 443 v---------------------------------~i~GDG~f-~~~~~eL~ta-----~~~~lpv~~vV~NN~~-~~~i~ 482 (574)
T PRK06882 443 V---------------------------------CVTGDGSI-QMNIQELSTA-----KQYDIPVVIVSLNNRF-LGMVK 482 (574)
T ss_pred E---------------------------------EEEcchhh-hccHHHHHHH-----HHhCCCeEEEEEECch-hHHHH
Confidence 9 99999999 9999999999 9999999999999987 54433
Q ss_pred hhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 977 EATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
... .....+... .....+..||.++|++||+++++|+|.+||+++|+++++..++|+||||.++++++..
T Consensus 483 ~~q--~~~~~~~~~----~~~~~~~~d~~~la~a~G~~~~~v~~~~eL~~al~~a~~~~~~p~liev~i~~~~~~~ 552 (574)
T PRK06882 483 QWQ--DLIYSGRHS----QVYMNSLPDFAKLAEAYGHVGIQIDTPDELEEKLTQAFSIKDKLVFVDVNVDETEHVY 552 (574)
T ss_pred HHH--HHhcCCccc----ccCCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhcCCCcEEEEEEecCccccC
Confidence 221 111111111 1111245799999999999999999999999999999975478999999999887653
No 26
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=6.4e-76 Score=714.96 Aligned_cols=535 Identities=24% Similarity=0.299 Sum_probs=432.7
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
+++++++|++.|+++||++|||+||+.+.++++++.+ ++|++|.++||++|+|||+||+|+||+|+||++|+|||++|+
T Consensus 2 ~~~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~~l~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~ 81 (563)
T PRK08527 2 KLSGSQMVCEALKEEGVKVVFGYPGGAILNIYDEIYKQNYFKHILTRHEQAAVHAADGYARASGKVGVAIVTSGPGFTNA 81 (563)
T ss_pred CCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHH
Confidence 3678999999999999999999999999999999965 489999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecC
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP 424 (1065)
++||++|+.+++|||+|+|+.+....+.+.+|++||.++++++|||+.++++++++.+.+++|++.|++++||||||+||
T Consensus 82 ~~gla~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~~tk~s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP 161 (563)
T PRK08527 82 VTGLATAYMDSIPLVLISGQVPNSLIGTDAFQEIDAVGISRPCVKHNYLVKSIEELPRILKEAFYIARSGRPGPVHIDIP 161 (563)
T ss_pred HHHHHHHhhcCCCEEEEecCCCccccCCCCCcccchhhhhhcccceEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEE
Q psy14416 425 ANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLV 504 (1065)
Q Consensus 425 ~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvI 504 (1065)
.|++.++++..... +... ........++++.+++++++|++||||+|
T Consensus 162 ~Dv~~~~~~~~~~~--~~~~-------------------------------~~~~~~~~~~~~~i~~~~~~L~~A~rPvi 208 (563)
T PRK08527 162 KDVTATLGEFEYPK--EISL-------------------------------KTYKPTYKGNSRQIKKAAEAIKEAKKPLF 208 (563)
T ss_pred HhHhhhhhcccccc--cccc-------------------------------ccCCCCCCCCHHHHHHHHHHHHcCCCCEE
Confidence 99987664321000 0000 00011123567889999999999999999
Q ss_pred EEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccCC
Q psy14416 505 IIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFGR 577 (1065)
Q Consensus 505 lvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g~ 577 (1065)
++|.++.++++.++|++|+|++++||++|+++||.+|++||+++|. ..++++++||+||.+|+++++..+..+
T Consensus 209 v~G~g~~~~~a~~~l~~lae~~~~pV~tt~~~kg~~~~~hpl~~G~~g~~~~~~~~~~l~~aD~vl~lG~~l~~~~~~~~ 288 (563)
T PRK08527 209 YLGGGAILSNASEEIRELVKKTGIPAVETLMARGVLRSDDPLLLGMLGMHGSYAANMAMSECDLLISLGARFDDRVTGKL 288 (563)
T ss_pred EECCCccccchHHHHHHHHHHHCCCEEEccccCCCCCCCChhhcCCCcccCCHHHHHHHHhCCEEEEeCCCCCccccCCh
Confidence 9999998888899999999999999999999999999999999873 356788999999999999987655433
Q ss_pred CccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhh
Q psy14416 578 APRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVIL 657 (1065)
Q Consensus 578 ~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ 657 (1065)
..+.++.++||||.|+..+++.+..++.+++|+..+|++|.+.++... ......|.+.+.+..+...... .
T Consensus 289 -~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~--~-- 359 (563)
T PRK08527 289 -SEFAKHAKIIHVDIDPSSISKIVNADYPIVGDLKNVLKEMLEELKEEN----PTTYKEWREILKRYNELHPLSY--E-- 359 (563)
T ss_pred -hhcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhhhcc----ccchHHHHHHHHHHHHhCcccc--c--
Confidence 234566789999999999999888999999999999999999875211 0122457665543322111000 0
Q ss_pred hhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCcc
Q psy14416 658 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 737 (1065)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~ 737 (1065)
....|+ + +..+++ .|.+.+|+|.+++.|+|++..|
T Consensus 360 --------------------------~~~~~i-----~---~~~~~~-----------~l~~~l~~d~iv~~d~g~~~~~ 394 (563)
T PRK08527 360 --------------------------DSDEVL-----K---PQWVIE-----------RVGELLGDDAIISTDVGQHQMW 394 (563)
T ss_pred --------------------------CCCCCc-----C---HHHHHH-----------HHHhhCCCCeEEEECCcHHHHH
Confidence 012245 6 777888 9999999999999999875555
Q ss_pred cccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccccc
Q psy14416 738 DETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESG 817 (1065)
Q Consensus 738 ~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 817 (1065)
...++.. ..| +.++.
T Consensus 395 ~~~~~~~-----------------------------------------------~~~-------~~~~~----------- 409 (563)
T PRK08527 395 VAQFYPF-----------------------------------------------NYP-------RQLAT----------- 409 (563)
T ss_pred HHHhccc-----------------------------------------------CCC-------CeEEc-----------
Confidence 3322110 001 11111
Q ss_pred ceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEE
Q psy14416 818 EVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVI 897 (1065)
Q Consensus 818 ~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~ 897 (1065)
+|-+|+| |+++|+++ ||+++. |+++|+
T Consensus 410 ---------------~~~~g~m----------------------------G~~l~~ai--Ga~la~--------p~~~vv 436 (563)
T PRK08527 410 ---------------SGGLGTM----------------------------GYGLPAAL--GAKLAV--------PDKVVI 436 (563)
T ss_pred ---------------CCCcccc----------------------------cchHHHHH--HHHHhC--------CCCcEE
Confidence 2224555 99999988 999998 899999
Q ss_pred EccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCch
Q psy14416 898 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 977 (1065)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~ 977 (1065)
+++|||+| +|+.++|+|+ +++++|+++||+||++ |+.+..
T Consensus 437 ---------------------------------~i~GDG~f-~m~~~eL~Ta-----~~~~lpvi~vV~NN~~-~~~i~~ 476 (563)
T PRK08527 437 ---------------------------------NFTGDGSI-LMNIQELMTA-----VEYKIPVINIILNNNF-LGMVRQ 476 (563)
T ss_pred ---------------------------------EEecCchh-cccHHHHHHH-----HHhCCCeEEEEEECCc-chhHHH
Confidence 99999999 9999999999 9999999999999987 443332
Q ss_pred hhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 978 ATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
. ......+. .......+.+||.++|++||+++++|++.+||+++|+++++. ++|+||||.+++.++..
T Consensus 477 ~--~~~~~~~~----~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~-~~p~lieV~v~~~~~~~ 544 (563)
T PRK08527 477 W--QTFFYEER----YSETDLSTQPDFVKLAESFGGIGFRVTTKEEFDKALKEALES-DKVALIDVKIDRFENVL 544 (563)
T ss_pred H--HHhhcCCc----eeeccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhC-CCCEEEEEEECCccccc
Confidence 1 11111111 111222346899999999999999999999999999999986 89999999999877553
No 27
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=100.00 E-value=5.2e-76 Score=721.94 Aligned_cols=540 Identities=22% Similarity=0.279 Sum_probs=435.2
Q ss_pred cccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc----CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecc
Q psy14416 263 YDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSG 338 (1065)
Q Consensus 263 ~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~----~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsG 338 (1065)
...+++++++|++.|+++||+||||+||+.+.++++++.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|
T Consensus 15 ~~~~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~~~i~~i~~rhE~~Aa~aA~gyar~tgk~gv~~~t~G 94 (616)
T PRK07418 15 TPQRATGAYALMDSLKRHGVKHIFGYPGGAILPIYDELYKAEAEGWLKHILVRHEQGAAHAADGYARATGKVGVCFGTSG 94 (616)
T ss_pred CCccccHHHHHHHHHHHcCCCEEEeCcCcchHHHHHHHHhcccCCCceEEEeccHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 3457899999999999999999999999999999999953 369999999999999999999999999999999999
Q ss_pred ccccccccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCE
Q psy14416 339 PGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGV 418 (1065)
Q Consensus 339 pG~~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GP 418 (1065)
||++|+++||++|+.+++|||+|+|+.+....+++.+|++||..+|+++|||+.++.+++++++.+++|++.|.++||||
T Consensus 95 PG~~n~l~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~~Qe~d~~~~~~~vtk~~~~v~~~~~i~~~l~~A~~~A~~~~~GP 174 (616)
T PRK07418 95 PGATNLVTGIATAQMDSVPMVVITGQVPRPAIGTDAFQETDIFGITLPIVKHSYVVRDPSDMARIVAEAFHIASSGRPGP 174 (616)
T ss_pred ccHHHHHHHHHHHHhcCCCEEEEecCCCccccCCCCcccccHHHHhhhcceeEEEeCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHh
Q psy14416 419 SYLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILE 498 (1065)
Q Consensus 419 V~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~ 498 (1065)
|||+||.|++.++++..... +... +. ......+.++++++++++++|++
T Consensus 175 v~l~iP~Dv~~~~~~~~~~~--~~~~----~~-------------------------~~~~~~~~~~~~~v~~~~~~L~~ 223 (616)
T PRK07418 175 VLIDIPKDVGQEEFDYVPVE--PGSV----KP-------------------------PGYRPTVKGNPRQINAALKLIEE 223 (616)
T ss_pred EEEecchhhhhchhcccccC--cccc----cc-------------------------CCCCCCCCCCHHHHHHHHHHHHh
Confidence 99999999988775421100 0000 00 00011234678899999999999
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCcccc
Q psy14416 499 AKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNW 571 (1065)
Q Consensus 499 AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~ 571 (1065)
||||+|++|.++.++++.++|++|||++|+||++|+++||++|++||+++|. ..++++++||+||.+|+++++
T Consensus 224 AkrPvI~~G~g~~~~~a~~~l~~lae~l~~pV~tt~~gkg~~p~~hpl~~G~~G~~g~~~~~~~l~~aDlvL~vG~~~~~ 303 (616)
T PRK07418 224 AERPLLYVGGGAISAGAHAELKELAERFQIPVTTTLMGKGAFDEHHPLSVGMLGMHGTAYANFAVTECDLLIAVGARFDD 303 (616)
T ss_pred CCCCEEEECCCcCcccHHHHHHHHHHHHCCCEEEccCCCcCCCCCCcccccCCCCCCCHHHHHHHHhCCEEEEEcCCCCc
Confidence 9999999999998888899999999999999999999999999999999883 356788999999999999987
Q ss_pred ccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhc
Q psy14416 572 ILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQV 651 (1065)
Q Consensus 572 ~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~ 651 (1065)
..+..+ ..+.++.++||||.|+..+++.+..++.|++|+..+|++|.+.++.... ......|.+.++++++.....
T Consensus 304 ~~~~~~-~~~~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~ 379 (616)
T PRK07418 304 RVTGKL-DEFASRAKVIHIDIDPAEVGKNRRPDVPIVGDVRKVLVKLLERSLEPTT---PPRTQAWLERINRWKQDYPLV 379 (616)
T ss_pred cccCCh-hhcCCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHHhhhcccc---ccchHHHHHHHHHHHHhCccc
Confidence 655333 2355667899999999999999999999999999999999988752110 012356766555433321110
Q ss_pred ccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECC
Q psy14416 652 KLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNN 731 (1065)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~ 731 (1065)
. . ....++ + +..+++ +|.+.+| +.+++.|.
T Consensus 380 ~--~----------------------------~~~~~l-----~---~~~v~~-----------~l~~~~~-d~i~~~D~ 409 (616)
T PRK07418 380 V--P----------------------------PYEGEI-----Y---PQEVLL-----------AVRDLAP-DAYYTTDV 409 (616)
T ss_pred c--c----------------------------CCCCCc-----C---HHHHHH-----------HHHhhCC-CcEEEECC
Confidence 0 0 112346 6 777888 9999998 69999999
Q ss_pred CCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccc
Q psy14416 732 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYA 811 (1065)
Q Consensus 732 G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 811 (1065)
|++..|..+++.. .| ..++.
T Consensus 410 G~~~~~~~~~~~~------------------------------------------------~p-------~~~~~----- 429 (616)
T PRK07418 410 GQHQMWAAQFLRN------------------------------------------------GP-------RRWIS----- 429 (616)
T ss_pred hHHHHHHHHhhhc------------------------------------------------CC-------CeEEc-----
Confidence 8766664432210 00 00111
Q ss_pred ccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheecccccccc
Q psy14416 812 SIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVL 891 (1065)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~ 891 (1065)
++-+|+| |+++|+++ ||+++.
T Consensus 430 ---------------------s~~~g~m----------------------------G~glpaAi--GA~lA~-------- 450 (616)
T PRK07418 430 ---------------------SAGLGTM----------------------------GFGMPAAM--GVKVAL-------- 450 (616)
T ss_pred ---------------------CCCcccc----------------------------ccHHHHHH--HHHHhC--------
Confidence 2224455 99999998 999998
Q ss_pred ccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcc
Q psy14416 892 PVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGI 971 (1065)
Q Consensus 892 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~ 971 (1065)
|+++|+ +++|||+| +|+.++|+|+ +|+++|+++||+||++
T Consensus 451 p~r~Vv---------------------------------~i~GDG~f-~m~~~eL~Ta-----~r~~lpvi~vV~NN~~- 490 (616)
T PRK07418 451 PDEEVI---------------------------------CIAGDASF-LMNIQELGTL-----AQYGINVKTVIINNGW- 490 (616)
T ss_pred CCCcEE---------------------------------EEEcchHh-hhhHHHHHHH-----HHhCCCeEEEEEECCc-
Confidence 999999 99999999 9999999999 9999999999999987
Q ss_pred cCCCchhhHhHHhhcCCcccCCCCCCC-CCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q psy14416 972 YGGFDEATYASIVESGEVTTVSPPTSL-GPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSAD 1050 (1065)
Q Consensus 972 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 1050 (1065)
|+.+.... ...+ ... +. ...+ .+.+||.++|++||++|++|+|.+||+++|+++++. ++|+||||.++++++
T Consensus 491 ~g~i~~~q-~~~~-~~~---~~-~~~~~~~~~d~~~~A~a~G~~g~~V~~~~el~~al~~a~~~-~~p~lIeV~i~~~~~ 563 (616)
T PRK07418 491 QGMVRQWQ-ESFY-GER---YS-ASNMEPGMPDFVKLAEAFGVKGMVISERDQLKDAIAEALAH-DGPVLIDVHVRRDEN 563 (616)
T ss_pred chHHHHHH-HHhc-CCC---ce-eecCCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhC-CCCEEEEEEecCccc
Confidence 44333221 1111 111 11 1111 246899999999999999999999999999999986 899999999998886
Q ss_pred CCc
Q psy14416 1051 RKP 1053 (1065)
Q Consensus 1051 ~~~ 1053 (1065)
.++
T Consensus 564 ~~~ 566 (616)
T PRK07418 564 CYP 566 (616)
T ss_pred cCC
Confidence 543
No 28
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=100.00 E-value=7.5e-76 Score=716.59 Aligned_cols=557 Identities=19% Similarity=0.253 Sum_probs=431.2
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 345 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~ 345 (1065)
+++++++|++.|+++||++|||+||+.+.++++++.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 1 ~~~~~~~l~~~L~~~GV~~vFGipG~~~~~l~dal~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~~ 80 (579)
T TIGR03457 1 KMTPSEAFVEVLVANGVTHAFGIMGSAFMDAMDLFPPAGIRFIPVVHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNCV 80 (579)
T ss_pred CCcHHHHHHHHHHHCCCCEEEEccCcchHHHHHHHhhcCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHH
Confidence 36899999999999999999999999999999999878899999999999999999999999999999999999999999
Q ss_pred cccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecCh
Q psy14416 346 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPA 425 (1065)
Q Consensus 346 ~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~ 425 (1065)
+||++|+.+++|||+|+|+.+....+.+.+|++||..+|+++|||+.++.+++++++.+++|++.|.+++ |||||+||.
T Consensus 81 ~gla~A~~~~~Pvl~I~g~~~~~~~~~~~~Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~-GPV~l~iP~ 159 (579)
T TIGR03457 81 TAIAAAYWAHTPVVIVTPEAGTKTIGLGGFQEADQLPMFQEFTKYQGHVRHPSRMAEVLNRCFERAWREM-GPAQLNIPR 159 (579)
T ss_pred HHHHHHhhcCCCEEEEeCCCccccCCCCCCcccchhhhhhcceeEEEecCCHHHHHHHHHHHHHHHhcCC-CCEEEEeCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999875 999999999
Q ss_pred hhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q psy14416 426 NLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505 (1065)
Q Consensus 426 Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvIl 505 (1065)
|++.++++..... +. . .....++++.+++++++|++||||+|+
T Consensus 160 Dv~~~~~~~~~~~--~~---------------------------------~--~~~~~~~~~~i~~~~~~L~~A~rP~i~ 202 (579)
T TIGR03457 160 DYFYGEIDVEIPR--PV---------------------------------R--LDRGAGGATSLAQAARLLAEAKFPVII 202 (579)
T ss_pred chhhhhcccccCc--cc---------------------------------c--cCCCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 9988776421100 00 0 012235778899999999999999999
Q ss_pred EccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCcccccccc-CC
Q psy14416 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHF-GR 577 (1065)
Q Consensus 506 vG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~-g~ 577 (1065)
+|.++.++++.++|++|||++|+||++|+++||.+|++||+++|. ...+++++|||||.+|+++++..+. ++
T Consensus 203 ~G~g~~~~~a~~~l~~lae~~~~PV~tt~~gkg~~p~~hp~~~G~~g~~g~~~~~~~l~~aDlil~lG~~~~~~~~~~~~ 282 (579)
T TIGR03457 203 SGGGVVMGDAVEECKALAERLGAPVVNSYLHNDSFPASHPLWVGPLGYQGSKAAMKLISDADVVLALGTRLGPFGTLPQY 282 (579)
T ss_pred ECcCccccChHHHHHHHHHHhCCCEEEcccccccCCCCCchhccCCcCcchHHHHHHHHhCCEEEEECCCCccccccccc
Confidence 999998888899999999999999999999999999999999983 3567889999999999998754332 11
Q ss_pred C-ccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchh
Q psy14416 578 A-PRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVI 656 (1065)
Q Consensus 578 ~-~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 656 (1065)
. ..+.+++++||||.|+..+++++..++.|++|++.+|++|.+.+..+... ..+..|.+.+.+....+.+...+.-
T Consensus 283 ~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (579)
T TIGR03457 283 GIDYWPKNAKIIQVDANAKMIGLVKKVTVGICGDAKAAAAEILQRLAGKAGD---ANRAERKAKIQAERSAWEQELSEMT 359 (579)
T ss_pred ccccCCCCCeEEEEeCCHHHhCCCCCCCeeEecCHHHHHHHHHHhhhhcccc---cchhhhhhhhhhhHHHHHHHHHHHH
Confidence 1 12345678999999999999999999999999999999999987521000 0111222111111111111110000
Q ss_pred hhhhccCCccCCC-CccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcC
Q psy14416 657 LVIVNNNGIYGGF-DETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG 735 (1065)
Q Consensus 657 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~ 735 (1065)
.......... ++ .......++ + +..+++ .|.+.+|++++++.|.|++.
T Consensus 360 ---~~~~~~~~~~~~~---------~~~~~~~~l-----~---~~~~~~-----------~l~~~l~~~~iv~~d~G~~~ 408 (579)
T TIGR03457 360 ---HERDPFSLDMIVE---------QRQEEGNWL-----H---PRQVLR-----------ELEKAMPEDAIVSTDIGNIN 408 (579)
T ss_pred ---hhccccccccccc---------cccCCCCCc-----C---HHHHHH-----------HHHHhCCCCeEEEECCchhH
Confidence 0000000000 00 000112345 6 777888 99999999999999999877
Q ss_pred cccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccc
Q psy14416 736 GFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVE 815 (1065)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 815 (1065)
.|..+++.. ..| +.++.
T Consensus 409 ~~~~~~~~~-----------------------------------------------~~p-------~~~~~--------- 425 (579)
T TIGR03457 409 SVANSYLRF-----------------------------------------------EKP-------RKFLA--------- 425 (579)
T ss_pred HHHHHhcCc-----------------------------------------------CCC-------CeEEc---------
Confidence 665433221 001 01111
Q ss_pred ccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEE
Q psy14416 816 SGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVIL 895 (1065)
Q Consensus 816 ~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 895 (1065)
+|-+|+| |+++|+++ ||+++. |+++
T Consensus 426 -----------------~~~~g~m----------------------------G~~lpaai--Ga~la~--------p~~~ 450 (579)
T TIGR03457 426 -----------------PMSFGNC----------------------------GYAFPTII--GAKIAA--------PDRP 450 (579)
T ss_pred -----------------CCccccc----------------------------cchHHHHH--hhhhhC--------CCCc
Confidence 2224455 99999998 999998 9999
Q ss_pred EEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCC
Q psy14416 896 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 975 (1065)
Q Consensus 896 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~ 975 (1065)
|| +++|||+| +|+.++|+|+ +|+++|+++||+||+| |+..
T Consensus 451 Vv---------------------------------~i~GDG~f-~m~~~eL~Ta-----vr~~lpvi~vV~NN~~-yg~i 490 (579)
T TIGR03457 451 VV---------------------------------AYAGDGAW-GMSMNEIMTA-----VRHDIPVTAVVFRNRQ-WGAE 490 (579)
T ss_pred EE---------------------------------EEEcchHH-hccHHHHHHH-----HHhCCCeEEEEEECcc-hHHH
Confidence 99 99999999 9999999999 9999999999999988 4433
Q ss_pred chhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhc--CCCCEEEEEEeCCCCCCCc
Q psy14416 976 DEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQT--TTRPSLINILINPSADRKP 1053 (1065)
Q Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~--~~~~~li~~~~~~~~~~~~ 1053 (1065)
... ... ...+. .......+.+||.++|++||+++++|++.+||+.+|+++++. .++|+||||.+++++...-
T Consensus 491 ~~~-~~~-~~~~~----~~~~~~~~~~d~~~lA~a~G~~g~~v~~~~el~~al~~a~~~~~~~~p~lieV~v~~~~~~~~ 564 (579)
T TIGR03457 491 KKN-QVD-FYNNR----FVGTELESELSFAGIADAMGAKGVVVDKPEDVGPALKKAIAAQAEGKTTVIEIVCTRELGDPF 564 (579)
T ss_pred HHH-HHH-hhCCc----ceeccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhhCCCCCcEEEEEEeCCCcCCch
Confidence 221 111 11111 111222344899999999999999999999999999999872 3789999999998886433
Q ss_pred chhhhh
Q psy14416 1054 QNFSWL 1059 (1065)
Q Consensus 1054 ~~~~~~ 1059 (1065)
...|+
T Consensus 565 -~~~~~ 569 (579)
T TIGR03457 565 -RRDAL 569 (579)
T ss_pred -hhhhc
Confidence 33454
No 29
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=100.00 E-value=6.5e-76 Score=712.07 Aligned_cols=527 Identities=21% Similarity=0.309 Sum_probs=426.9
Q ss_pred HHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccccccc
Q psy14416 269 ANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGM 348 (1065)
Q Consensus 269 ~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av 348 (1065)
++++|++.|+++||+++||+||+.+.++++++.+++|++|.++||++|+|||+||+|+||||+||++|+|||++|+++||
T Consensus 1 ~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~gl 80 (539)
T TIGR02418 1 GADLVVDQLENQGVRYVFGIPGAKIDRVFDALEDKGIELIVVRHEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTGL 80 (539)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhCCCCEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHHH
Confidence 36899999999999999999999999999999878899999999999999999999999999999999999999999999
Q ss_pred ccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChhhh
Q psy14416 349 ANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLL 428 (1065)
Q Consensus 349 ~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~Dv~ 428 (1065)
++|+.+++|||+|+|+.+....+.+.+|++||..+|+++|||+.++.+++++++.+++|++.|.++|||||||+||.|++
T Consensus 81 ~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~dv~ 160 (539)
T TIGR02418 81 ATANSEGDPVVAIGGQVKRADLLKLTHQSMDNVALFRPITKYSAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDVV 160 (539)
T ss_pred HHHhhcCCCEEEEeCCCcccccccCcccccchhhhhhcceeeeeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChhHh
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcc
Q psy14416 429 AQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVIIGK 508 (1065)
Q Consensus 429 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvIlvG~ 508 (1065)
.++++..... . ........++.+.+++++++|++||||+|++|.
T Consensus 161 ~~~~~~~~~~---~---------------------------------~~~~~~~~~~~~~i~~~~~~l~~A~rPvi~~G~ 204 (539)
T TIGR02418 161 DSPVSVKAIP---A---------------------------------SYAPKLGAAPDDAIDEVAEAIQNAKLPVLLLGL 204 (539)
T ss_pred hCcccccccC---c---------------------------------ccCCCCCCCCHHHHHHHHHHHHcCCCCEEEECC
Confidence 8876532111 0 001111234667899999999999999999999
Q ss_pred CCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCC-cccccH-------HHHhhhcCCCEEEEeCCccccccccCCCcc
Q psy14416 509 GAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAH-PNCVSA-------ARTHALQNADLVLLLGARLNWILHFGRAPR 580 (1065)
Q Consensus 509 g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~h-pl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g~~~~ 580 (1065)
++.++++.+++++|+|++|+||++|+++||.+|++| |+++|. ...+++++||+||.+|+++.+.....|..
T Consensus 205 g~~~~~a~~~l~~lae~~g~pv~tt~~gkg~i~~~~~~~~~G~~G~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~- 283 (539)
T TIGR02418 205 RASSPETTEAVRRLLKKTQLPVVETFQGAGAVSRELEDHFFGRVGLFRNQPGDRLLKQADLVITIGYDPIEYEPRNWNS- 283 (539)
T ss_pred CcCcccHHHHHHHHHHHhCCCEEEccccCcCCCCCCChhhcccCcCCCcHHHHHHHHhCCEEEEecCcccccCccccCc-
Confidence 998888899999999999999999999999999997 777762 44578899999999999987655444432
Q ss_pred ccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhhhh
Q psy14416 581 FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILVIV 660 (1065)
Q Consensus 581 ~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 660 (1065)
.++.++||||.|+..+++.+..++.|++|++.+|++|.+.++... . .....+|.+.++...+...+...+
T Consensus 284 -~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~------ 353 (539)
T TIGR02418 284 -ENDATIVHIDVEPAQIDNNYQPDLELVGDIASTLDLLAERIPGYE--L-PPDALAILEDLKQQREALDRVPAT------ 353 (539)
T ss_pred -CCCCeEEEEeCChHHcCCccCCCeEEecCHHHHHHHHHHhhcccc--C-ccchHHHHHHHHHHHHHhhhcccc------
Confidence 234689999999999999999999999999999999998775211 0 011234555544433222111000
Q ss_pred ccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCccccc
Q psy14416 661 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDET 740 (1065)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~~~~ 740 (1065)
....++ + +..+++ .|.+.+|++.+++.|+|++..|...
T Consensus 354 -----------------------~~~~~i-----~---~~~~~~-----------~l~~~l~~~~ii~~d~G~~~~~~~~ 391 (539)
T TIGR02418 354 -----------------------LKQAHL-----H---PLEIIK-----------AMQAIVTDDVTVTVDMGSHYIWMAR 391 (539)
T ss_pred -----------------------CCCCCc-----C---HHHHHH-----------HHHhhCCCCCEEEECCcHHHHHHHH
Confidence 011245 6 677888 9999999999999999987777553
Q ss_pred chhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccccccee
Q psy14416 741 TYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVT 820 (1065)
Q Consensus 741 ~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 820 (1065)
++.. ..| +.++.
T Consensus 392 ~~~~-----------------------------------------------~~~-------~~~~~-------------- 403 (539)
T TIGR02418 392 YFRS-----------------------------------------------YRA-------RHLLI-------------- 403 (539)
T ss_pred hccc-----------------------------------------------CCC-------Cceec--------------
Confidence 3221 000 00000
Q ss_pred eccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEEEcc
Q psy14416 821 TVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNN 900 (1065)
Q Consensus 821 ~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 900 (1065)
++-+|+ ||+++++++ ||+++. |+++|+
T Consensus 404 ------------~~~~g~----------------------------mG~~lpaai--Ga~la~--------~~~~vv--- 430 (539)
T TIGR02418 404 ------------SNGMQT----------------------------LGVALPWAI--GAALVR--------PNTKVV--- 430 (539)
T ss_pred ------------CCCccc----------------------------cccHHHHHH--HHHHhC--------CCCcEE---
Confidence 111334 499999999 999998 899999
Q ss_pred CcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhH
Q psy14416 901 NGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATY 980 (1065)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~ 980 (1065)
+++|||+| +|+.++|+|+ +|+++|+++||+||+| |+.+...+
T Consensus 431 ------------------------------~i~GDGsf-~m~~~eL~Ta-----~~~~lpi~ivV~NN~~-y~~~~~~~- 472 (539)
T TIGR02418 431 ------------------------------SVSGDGGF-LFSSMELETA-----VRLKLNIVHIIWNDNG-YNMVEFQE- 472 (539)
T ss_pred ------------------------------EEEcchhh-hchHHHHHHH-----HHhCCCeEEEEEECCc-chHHHHHH-
Confidence 99999999 9999999999 9999999999999976 55443211
Q ss_pred hHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 981 ASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 981 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
...+ +. .. ....+++||.++|++||+++.+|++.+||+++|+++++. ++|+||||.+++++..
T Consensus 473 ~~~~--~~----~~-~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~a~~~-~~p~lIev~v~~~~~~ 535 (539)
T TIGR02418 473 EMKY--QR----SS-GVDFGPIDFVKYAESFGAKGLRVESPDQLEPTLRQAMEV-EGPVVVDIPVDYSDNP 535 (539)
T ss_pred HHhc--CC----cc-cccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhC-CCCEEEEEEecCcccc
Confidence 1111 11 11 112257999999999999999999999999999999986 8999999999988774
No 30
>PRK08611 pyruvate oxidase; Provisional
Probab=100.00 E-value=1e-75 Score=714.08 Aligned_cols=527 Identities=23% Similarity=0.360 Sum_probs=427.1
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc--CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ--EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 342 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~--~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~ 342 (1065)
..++++++|++.|+++||+++||+||+++.+|++++.+ .+|++|.++||++|+|||+||+|+||+|+||++|+|||++
T Consensus 2 ~~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~ 81 (576)
T PRK08611 2 AKIKAGEALVKLLQDWGIDHVYGIPGDSIDAVVDALRKEQDKIKFIQVRHEEVAALAAAAYAKLTGKIGVCLSIGGPGAI 81 (576)
T ss_pred CCCcHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCcHH
Confidence 45789999999999999999999999999999999964 4799999999999999999999999999999999999999
Q ss_pred ccccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEe
Q psy14416 343 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLD 422 (1065)
Q Consensus 343 N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~ 422 (1065)
|+++|+++|+.+++|||+|+|+++....+++++|++||.++|+++|||++++.+++++++.+++|++.|.++ +|||||+
T Consensus 82 N~l~gla~A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~-~GPV~l~ 160 (576)
T PRK08611 82 HLLNGLYDAKMDHVPVLALAGQVTSDLLGTDFFQEVNLEKMFEDVAVYNHQIMSAENLPEIVNQAIRTAYEK-KGVAVLT 160 (576)
T ss_pred HHHHHHHHHhhcCCCEEEEecCCcccccCCCCccccCHHHHhhcccceeEEeCCHHHHHHHHHHHHHHHhhC-CCCEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999875 5999999
Q ss_pred cChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCc
Q psy14416 423 FPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAP 502 (1065)
Q Consensus 423 iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrP 502 (1065)
||.|++.++++.....+.+ ........++++.+++++++|++||||
T Consensus 161 iP~Dv~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~i~~~~~~L~~AkrP 206 (576)
T PRK08611 161 IPDDLPAQKIKDTTNKTVD----------------------------------TFRPTVPSPKPKDIKKAAKLINKAKKP 206 (576)
T ss_pred eChhhhhcccccccccccc----------------------------------cCCCCCCCCCHHHHHHHHHHHHcCCCc
Confidence 9999988776432110000 001122346778899999999999999
Q ss_pred EEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCcccccccc
Q psy14416 503 LVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHF 575 (1065)
Q Consensus 503 vIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~ 575 (1065)
+|++|.++. .+.+++++|+|++|+||++|+++||.+|++||+++|. ...++++++|+||.+|+++.+..
T Consensus 207 vil~G~g~~--~a~~~l~~lae~~~~PV~tt~~gkg~~~~~hp~~~G~~g~~~~~~a~~~l~~aDlvl~iG~~~~~~~-- 282 (576)
T PRK08611 207 VILAGLGAK--HAKEELLAFAEKAKIPIIHTLPAKGIIPDDHPYSLGNLGKIGTKPAYEAMQEADLLIMVGTNYPYVD-- 282 (576)
T ss_pred EEEECcCcc--hHHHHHHHHHHHhCCCEEEccccccccCCCCccccccCCCCCcHHHHHHHHhCCEEEEeCCCCCccc--
Confidence 999999986 4568999999999999999999999999999999873 34567889999999999876431
Q ss_pred CCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccch
Q psy14416 576 GRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPV 655 (1065)
Q Consensus 576 g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 655 (1065)
+ ++++.++||||.|+..+++.+..++.|++|+..+|++|.+.++. .....|.+.+++..+.+++..++.
T Consensus 283 -~---~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 351 (576)
T PRK08611 283 -Y---LPKKAKAIQIDTDPANIGKRYPVNVGLVGDAKKALHQLTENIKH-------VEDRRFLEACQENMAKWWKWMEED 351 (576)
T ss_pred -c---CCCCCcEEEEeCCHHHcCCccCCCeeEecCHHHHHHHHHHhccc-------ccchHHHHHHHHHHHHHHHHhhhh
Confidence 2 22346899999999999999999999999999999999988752 123457776655544433322111
Q ss_pred hhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcC
Q psy14416 656 ILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG 735 (1065)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~ 735 (1065)
. . ....++ + +..+++ .|.+.+|++.+++.|.|.+.
T Consensus 352 ~------------------~--------~~~~~i-----~---p~~~~~-----------~l~~~l~~~~ivv~d~G~~~ 386 (576)
T PRK08611 352 E------------------N--------NASTPI-----K---PERVMA-----------AIQKIADDDAVLSVDVGTVT 386 (576)
T ss_pred c------------------c--------CCCCCc-----C---HHHHHH-----------HHhhhcCCCeEEEEcChHHH
Confidence 0 0 112245 5 667888 99999999999999998766
Q ss_pred cccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccc
Q psy14416 736 GFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVE 815 (1065)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 815 (1065)
.|..+++.. ..| ..++
T Consensus 387 ~~~~~~~~~-----------------------------------------------~~~-------~~~~---------- 402 (576)
T PRK08611 387 VWSARYLNL-----------------------------------------------GTN-------QKFI---------- 402 (576)
T ss_pred HHHHhcCCc-----------------------------------------------CCC-------CeEE----------
Confidence 654332211 000 0000
Q ss_pred ccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEE
Q psy14416 816 SGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVIL 895 (1065)
Q Consensus 816 ~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 895 (1065)
+++-+|+ ||+++++++ |++++. |+++
T Consensus 403 ----------------~~~~~g~----------------------------mG~glpaai--Ga~la~--------p~~~ 428 (576)
T PRK08611 403 ----------------ISSWLGT----------------------------MGCGLPGAI--AAKIAF--------PDRQ 428 (576)
T ss_pred ----------------eCCCchh----------------------------hhhhHHHHH--HHHHhC--------CCCc
Confidence 0111344 499999988 999998 9999
Q ss_pred EEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCC
Q psy14416 896 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 975 (1065)
Q Consensus 896 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~ 975 (1065)
|| +++|||+| +|+.++|+|+ +|+++|+++||+||+| |+.+
T Consensus 429 Vv---------------------------------~i~GDGsf-~m~~~eL~Ta-----~r~~l~~iivV~NN~~-~g~i 468 (576)
T PRK08611 429 AI---------------------------------AICGDGGF-SMVMQDFVTA-----VKYKLPIVVVVLNNQQ-LAFI 468 (576)
T ss_pred EE---------------------------------EEEcccHH-hhhHHHHHHH-----HHhCCCeEEEEEeCCc-chHH
Confidence 99 99999999 9999999999 9999999999999987 4433
Q ss_pred chhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCc
Q psy14416 976 DEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKP 1053 (1065)
Q Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~ 1053 (1065)
.... ... +. .......+++||.++|++||+++++|++.+||+++|+++++. ++|+||||.+++++...+
T Consensus 469 ~~~q--~~~--~~----~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~-~~p~lIeV~vd~~~~~~~ 537 (576)
T PRK08611 469 KYEQ--QAA--GE----LEYAIDLSDMDYAKFAEACGGKGYRVEKAEELDPAFEEALAQ-DKPVIIDVYVDPNAAPLP 537 (576)
T ss_pred HHHH--HHh--cC----CcccccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhC-CCCEEEEEEeCCcccCCC
Confidence 2211 111 11 111223456999999999999999999999999999999987 999999999998876544
No 31
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=100.00 E-value=3.6e-75 Score=710.56 Aligned_cols=542 Identities=22% Similarity=0.326 Sum_probs=431.8
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc---C-CceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ---E-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPG 340 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~---~-~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG 340 (1065)
.+++++++|++.|+++||++|||+||+.+.++++++.+ . +|++|.+|||++|+|||+||+|+||||+||++|+|||
T Consensus 8 ~~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~d~l~~~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG 87 (585)
T CHL00099 8 REKTGAFALIDSLVRHGVKHIFGYPGGAILPIYDELYAWEKKGLIKHILVRHEQGAAHAADGYARSTGKVGVCFATSGPG 87 (585)
T ss_pred ccccHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCcCCCceEEEecCHHHHHHHHHHHHHhcCCcEEEEECCCCc
Confidence 45789999999999999999999999999999999853 3 4999999999999999999999999999999999999
Q ss_pred ccccccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEE
Q psy14416 341 LLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSY 420 (1065)
Q Consensus 341 ~~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~ 420 (1065)
++|+++||++|+.+++|||+|+|+.++.+.+.+++|++||..+++++|||+.++.+++++++.+++|++.|.++||||||
T Consensus 88 ~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~ 167 (585)
T CHL00099 88 ATNLVTGIATAQMDSVPLLVITGQVGRAFIGTDAFQEVDIFGITLPIVKHSYVVRDARDISRIVAEAFYIAKHGRPGPVL 167 (585)
T ss_pred HHHHHHHHHHHhhcCCCEEEEecCCCccccCCCCccccchhhhhcCceeEEEEeCCHHHHHHHHHHHHHHHccCCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCC
Q psy14416 421 LDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAK 500 (1065)
Q Consensus 421 L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~Ak 500 (1065)
|+||.|++.++++..... +.. .. ++ .........++++.+++++++|++||
T Consensus 168 l~iP~Dv~~~~~~~~~~~--~~~--~~--~~-----------------------~~~~~~~~~~~~~~v~~a~~~L~~Ak 218 (585)
T CHL00099 168 IDIPKDVGLEKFDYYPPE--PGN--TI--IK-----------------------ILGCRPIYKPTIKRIEQAAKLILQSS 218 (585)
T ss_pred EecChhhhhhhccccccc--ccc--cc--cc-----------------------cccCCCCCCCCHHHHHHHHHHHHcCC
Confidence 999999987776421110 000 00 00 00011123467889999999999999
Q ss_pred CcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCcccccc
Q psy14416 501 APLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWIL 573 (1065)
Q Consensus 501 rPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~ 573 (1065)
||+||+|.++.++++.++|++|+|++|+||++|+++||++|++||+++|. ..+.++++|||||.+|+++++..
T Consensus 219 rPvil~G~g~~~~~a~~~l~~lae~lg~PV~tt~~~kg~~~~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~~~~~~ 298 (585)
T CHL00099 219 QPLLYVGGGAIISDAHQEITELAELYKIPVTTTLMGKGIFDEDHPLCLGMLGMHGTAYANFAVSECDLLIALGARFDDRV 298 (585)
T ss_pred CcEEEECCCCchhchHHHHHHHHHHHCCCEEEccccCcCCCCCCCcccCCCCCCCCHHHHHHHHhCCEEEEECCCCcccc
Confidence 99999999998888899999999999999999999999999999999883 34567899999999999998765
Q ss_pred ccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhccc
Q psy14416 574 HFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKL 653 (1065)
Q Consensus 574 ~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~ 653 (1065)
+..+ ..+.++.++||||.|+..+++++..++.+.+|+..+|++|.+.++.............|.+.++...+......
T Consensus 299 ~~~~-~~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 376 (585)
T CHL00099 299 TGKL-DEFACNAQVIHIDIDPAEIGKNRIPQVAIVGDVKKVLQELLELLKNSPNLLESEQTQAWRERINRWRKEYPLLI- 376 (585)
T ss_pred cCCH-hHcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHhChhhc-
Confidence 4333 22455678999999999999999899999999999999999877521110000112456555543322111000
Q ss_pred chhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCC
Q psy14416 654 PVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGI 733 (1065)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~ 733 (1065)
. ....|+ + +..+++ +|.+.+| |.+++.|+|+
T Consensus 377 -~----------------------------~~~~~l-----~---~~~~~~-----------~l~~~~~-d~iv~~d~G~ 407 (585)
T CHL00099 377 -P----------------------------KPSTSL-----S---PQEVIN-----------EISQLAP-DAYFTTDVGQ 407 (585)
T ss_pred -c----------------------------ccCCCc-----C---HHHHHH-----------HHHhhCC-CeEEEECCcH
Confidence 0 012356 7 778888 9999999 9999999987
Q ss_pred cCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccc
Q psy14416 734 YGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASI 813 (1065)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 813 (1065)
+..|...++.. .| ..++.
T Consensus 408 ~~~~~~~~~~~------------------------------------------------~~-------~~~~~------- 425 (585)
T CHL00099 408 HQMWAAQFLKC------------------------------------------------KP-------RKWLS------- 425 (585)
T ss_pred HHHHHHHhccC------------------------------------------------CC-------CcEEc-------
Confidence 66664432210 00 01111
Q ss_pred ccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheecccccccccc
Q psy14416 814 VESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPV 893 (1065)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~ 893 (1065)
++-+|+| |+++|+++ ||+++. |+
T Consensus 426 -------------------~~~~g~m----------------------------G~glpaai--Gaala~--------p~ 448 (585)
T CHL00099 426 -------------------SAGLGTM----------------------------GYGLPAAI--GAQIAH--------PN 448 (585)
T ss_pred -------------------Cccccch----------------------------hhhHHHHH--HHHHhC--------CC
Confidence 2224444 99999988 999998 99
Q ss_pred EEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccC
Q psy14416 894 ILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG 973 (1065)
Q Consensus 894 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~ 973 (1065)
++|+ +++|||+| +|+.++|+|+ +++++|+++||+||++ |+
T Consensus 449 ~~vv---------------------------------~i~GDG~f-~m~~~eL~Ta-----~~~~l~~~~vV~NN~~-y~ 488 (585)
T CHL00099 449 ELVI---------------------------------CISGDASF-QMNLQELGTI-----AQYNLPIKIIIINNKW-QG 488 (585)
T ss_pred CeEE---------------------------------EEEcchhh-hhhHHHHHHH-----HHhCCCeEEEEEECCc-ch
Confidence 9999 99999999 9999999999 9999999999999987 44
Q ss_pred CCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 974 GFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 974 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
.+.... .....+... ......+.+||.++|++||+.+++|++.+||+++|+++++. ++|.||||.++++++.
T Consensus 489 ~i~~~q--~~~~~~~~~---~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~-~~p~liev~v~~~~~~ 560 (585)
T CHL00099 489 MVRQWQ--QAFYGERYS---HSNMEEGAPDFVKLAEAYGIKGLRIKSRKDLKSSLKEALDY-DGPVLIDCQVIEDENC 560 (585)
T ss_pred HHHHHH--HHhcCCCcc---cccCCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhC-CCCEEEEEEECCCccc
Confidence 333221 111111111 11111246899999999999999999999999999999986 8999999999987764
No 32
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=100.00 E-value=3.6e-75 Score=712.12 Aligned_cols=533 Identities=18% Similarity=0.262 Sum_probs=430.5
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc--CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ--EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~--~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
+++++++|++.|+++||+||||+||+.+.+|++++.+ .+|++|.+|||++|+|||+||+|+||+|+||++|+|||++|
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n 81 (597)
T PRK08273 2 SQTVADFILERLREWGVRRVFGYPGDGINGLLGALGRADDKPEFVQARHEEMAAFMAVAHAKFTGEVGVCLATSGPGAIH 81 (597)
T ss_pred CccHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHH
Confidence 3689999999999999999999999999999999965 36999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccc-cEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEe
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYC-KYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLD 422 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~-k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~ 422 (1065)
+++||++|+.+++|||+|+|+.+....+++.+|++||.++|+++| ||+.++.+++++++.+++|++.|++++ |||||+
T Consensus 82 ~~~gi~~A~~d~vPvl~I~G~~~~~~~~~~~~q~~d~~~l~~~vt~k~~~~v~~~~~~~~~l~~A~~~A~~~~-gPV~i~ 160 (597)
T PRK08273 82 LLNGLYDAKLDHVPVVAIVGQQARAALGGHYQQEVDLQSLFKDVAGAFVQMVTVPEQLRHLVDRAVRTALAER-TVTAVI 160 (597)
T ss_pred HHHHHHHHHhcCCCEEEEecCCchhhcCCCCCCccCHHHHHHHHHHHHeeEeCCHHHHHHHHHHHHHHHhhCC-CCEEEE
Confidence 999999999999999999999999999999999999999999999 999999999999999999999999865 999999
Q ss_pred cChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCc
Q psy14416 423 FPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAP 502 (1065)
Q Consensus 423 iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrP 502 (1065)
||.|++.++++.+.....+.. .. + ........++++.+++++++|++||||
T Consensus 161 iP~Dv~~~~~~~~~~~~~~~~--~~---------------------~------~~~~~~~~~~~~~i~~a~~~L~~AkrP 211 (597)
T PRK08273 161 LPNDVQELEYEPPPHAHGTVH--SG---------------------V------GYTRPRVVPYDEDLRRAAEVLNAGRKV 211 (597)
T ss_pred eCcchhhCcccCccccccccc--cc---------------------c------CCCCCCCCCCHHHHHHHHHHHhcCCCE
Confidence 999998766532211000000 00 0 001122346788999999999999999
Q ss_pred EEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCcccccccc
Q psy14416 503 LVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHF 575 (1065)
Q Consensus 503 vIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~ 575 (1065)
+|++|.++. ++.+++.+|||++|+||++|++|||.+|++||+++|. ..++.+++|||||.+|+++++..
T Consensus 212 vi~~G~g~~--~a~~~l~~lae~~~~PV~tt~~gkg~~~e~hp~~~G~~G~~g~~~a~~~~~~aDlvl~lG~~~~~~~-- 287 (597)
T PRK08273 212 AILVGAGAL--GATDEVIAVAERLGAGVAKALLGKAALPDDLPWVTGSIGLLGTKPSYELMRECDTLLMVGSSFPYSE-- 287 (597)
T ss_pred EEEECcchH--hHHHHHHHHHHHhCCceeecccCcccCCCCCccceecCCCCccHHHHHHHHhCCEEEEeCCCCCHHh--
Confidence 999999986 6788999999999999999999999999999999973 45677899999999999986431
Q ss_pred CCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccch
Q psy14416 576 GRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPV 655 (1065)
Q Consensus 576 g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 655 (1065)
+... .++.++||||.|+..+++.++.++.|++|+..+|++|.+.++. .....|.+.+.+..+.+.+...+.
T Consensus 288 -~~~~-~~~~~~i~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 358 (597)
T PRK08273 288 -FLPK-EGQARGVQIDIDGRMLGLRYPMEVNLVGDAAETLRALLPLLER-------KKDRSWRERIEKWVARWWETLEAR 358 (597)
T ss_pred -cCCC-CCCCeEEEEeCCHHHcCCCCCCCceEecCHHHHHHHHHHhhhc-------cCCHHHHHHHHHHHHHhHhhhhhh
Confidence 2211 2356899999999999999999999999999999999988762 123467776665555443332111
Q ss_pred hhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcC
Q psy14416 656 ILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG 735 (1065)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~ 735 (1065)
.. .+..|+ + +..+++ .|.+.+|++.+++.|.|++.
T Consensus 359 -------------------~~-------~~~~~l-----~---p~~~~~-----------~l~~~l~~~~ivv~d~G~~~ 393 (597)
T PRK08273 359 -------------------AM-------VPADPV-----N---PQRVFW-----------ELSPRLPDNAILTADSGSCA 393 (597)
T ss_pred -------------------hc-------CCCCCc-----C---HHHHHH-----------HHHhhCCCCeEEEECCcHHH
Confidence 00 112356 7 778899 99999999999999999866
Q ss_pred cccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccc
Q psy14416 736 GFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVE 815 (1065)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 815 (1065)
.|..+++.. . .+ ..
T Consensus 394 ~~~~~~~~~-----~------------------------------------------~~-------~~------------ 407 (597)
T PRK08273 394 NWYARDLRM-----R------------------------------------------RG-------MM------------ 407 (597)
T ss_pred HHHHHhCCC-----C------------------------------------------CC-------Ce------------
Confidence 665433221 0 00 00
Q ss_pred ccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEE
Q psy14416 816 SGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVIL 895 (1065)
Q Consensus 816 ~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 895 (1065)
+-++|.+|+| |+++|+++ ||+++. |+++
T Consensus 408 --------------~~~s~~~g~m----------------------------G~glpaai--Ga~la~--------p~~~ 435 (597)
T PRK08273 408 --------------ASLSGTLATM----------------------------GPAVPYAI--AAKFAH--------PDRP 435 (597)
T ss_pred --------------EEecCccccc----------------------------cchHHHHH--HHHHhC--------CCCc
Confidence 0123446666 99999999 999998 9999
Q ss_pred EEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcc-hhhHHHhhccCcccc-----CCCEEEEEEcCC
Q psy14416 896 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD-ETTYASIVESGEVTT-----VLPVILVIVNNN 969 (1065)
Q Consensus 896 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~v~nn~ 969 (1065)
|+ +++|||+| +|+ .+|++|+ +|+ ++|+++||+||+
T Consensus 436 Vv---------------------------------~i~GDG~f-~m~~~~EL~Ta-----~r~~~~~~~lpviivV~NN~ 476 (597)
T PRK08273 436 VI---------------------------------ALVGDGAM-QMNGMAELITV-----AKYWRQWSDPRLIVLVLNNR 476 (597)
T ss_pred EE---------------------------------EEEcchhH-hccchHHHHHH-----HHHhhcccCCCEEEEEEeCC
Confidence 99 99999999 999 5999999 999 899999999998
Q ss_pred cccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCC
Q psy14416 970 GIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSA 1049 (1065)
Q Consensus 970 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~ 1049 (1065)
| |+.+.... ... .+. . ........+++||.++|++||+++++|++.+||+++|+++++. ++|+||||.+++++
T Consensus 477 ~-~~~i~~~q-~~~--~~~-~-~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~-~~p~lIeV~~~~~~ 549 (597)
T PRK08273 477 D-LNQVTWEQ-RVM--EGD-P-KFEASQDLPDVPYARFAELLGLKGIRVDDPEQLGAAWDEALAA-DRPVVLEVKTDPNV 549 (597)
T ss_pred c-chHHHHHH-HHh--cCC-C-cccccccCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhC-CCCEEEEEEeCCCC
Confidence 8 44333221 111 111 0 1111233467999999999999999999999999999999986 99999999999887
Q ss_pred C
Q psy14416 1050 D 1050 (1065)
Q Consensus 1050 ~ 1050 (1065)
.
T Consensus 550 ~ 550 (597)
T PRK08273 550 P 550 (597)
T ss_pred C
Confidence 3
No 33
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=3.2e-75 Score=706.85 Aligned_cols=522 Identities=21% Similarity=0.295 Sum_probs=416.0
Q ss_pred ccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccccc
Q psy14416 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 346 (1065)
Q Consensus 267 ~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~ 346 (1065)
++++++|++.|+++||+++||+||+++.+|++++++++|++|.++||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus 2 ~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~i~~v~~~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l~ 81 (549)
T PRK06457 2 PSVAEVIIRVLEDNGIQRIYGIPGDSIDPLVDAIRKSKVKYVQVRHEEGAALAASVEAKITGKPSACMGTSGPGSIHLLN 81 (549)
T ss_pred CcHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHhcCCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhHH
Confidence 47899999999999999999999999999999998778999999999999999999999999999999999999999999
Q ss_pred ccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 347 GMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 347 av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
|+++|+.+++|||+|+|+++....+++++|++||.++|+++|||+.++++++++++.+++|++.|+++ +|||||+||.|
T Consensus 82 ~l~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~-~GPV~l~iP~D 160 (549)
T PRK06457 82 GLYDAKMDHAPVIALTGQVESDMIGHDYFQEVNLTKLFDDVAVFNQILINPENAEYIIRRAIREAISK-RGVAHINLPVD 160 (549)
T ss_pred HHHHHHhcCCCEEEEecCCCccccCCCcccccchhhhhccceeEEEEeCCHHHHHHHHHHHHHHHhcC-CCCEEEEeCHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999985 69999999999
Q ss_pred hhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEEEE
Q psy14416 427 LLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVII 506 (1065)
Q Consensus 427 v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvIlv 506 (1065)
++.++.+... . .. . ... ......++++++++|++||||+|++
T Consensus 161 v~~~~~~~~~-~---~~--------------------------------~-~~~-~~~~~~~i~~~~~~L~~AkrPvii~ 202 (549)
T PRK06457 161 ILRKSSEYKG-S---KN--------------------------------T-EVG-KVKYSIDFSRAKELIKESEKPVLLI 202 (549)
T ss_pred Hhhccccccc-c---cc--------------------------------c-CCC-CCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 9876543210 0 00 0 000 1112357899999999999999999
Q ss_pred ccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccCCCc
Q psy14416 507 GKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFGRAP 579 (1065)
Q Consensus 507 G~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g~~~ 579 (1065)
|.++. ++.+++++|||++|+||++|+++||.+|++||+++|. ..++++++||+||.+|+++++.. +
T Consensus 203 G~g~~--~a~~~l~~lAe~~~~PV~tt~~gkg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~~~~~---~-- 275 (549)
T PRK06457 203 GGGTR--GLGKEINRFAEKIGAPIIYTLNGKGILPDLDPKVMGGIGLLGTKPSIEAMDKADLLIMLGTSFPYVN---F-- 275 (549)
T ss_pred Ccchh--hHHHHHHHHHHHHCCCEEEcccccccCCCCChhhccCCCCCCCHHHHHHHHhCCEEEEECCCCChhh---c--
Confidence 99886 5568999999999999999999999999999999873 34567889999999999886532 2
Q ss_pred cccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhhh
Q psy14416 580 RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILVI 659 (1065)
Q Consensus 580 ~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 659 (1065)
+.++.++||||.|+..+++.+..++.+++|++.+|+.+.... ...|.+.+++....+.+...+..
T Consensus 276 -~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~--- 340 (549)
T PRK06457 276 -LNKSAKVIQVDIDNSNIGKRLDVDLSYPIPVAEFLNIDIEEK-----------SDKFYEELKGKKEDWLDSISKQE--- 340 (549)
T ss_pred -CCCCCcEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHhhcc-----------cchhHHHHHHHHHHHHHHHHHhh---
Confidence 233568999999999999999999999999999995432211 12233333222222222221110
Q ss_pred hccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCcccc
Q psy14416 660 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 739 (1065)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~~~ 739 (1065)
. ....|+ + +..+++ .|.+.+|++.+++.|.|.+..|..
T Consensus 341 ----------------~-------~~~~~i-----~---~~~~~~-----------~l~~~l~~~~iiv~d~g~~~~~~~ 378 (549)
T PRK06457 341 ----------------N-------SLDKPM-----K---PQRVAY-----------IVSQKCKKDAVIVTDTGNVTMWTA 378 (549)
T ss_pred ----------------c-------CCCCCc-----C---HHHHHH-----------HHHhhCCCCeEEEECCcHHHHHHH
Confidence 0 012245 6 777888 999999999999999987665644
Q ss_pred cchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccccce
Q psy14416 740 TTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEV 819 (1065)
Q Consensus 740 ~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 819 (1065)
.++.. ..| +.+
T Consensus 379 ~~~~~-----------------------------------------------~~~-------~~~--------------- 389 (549)
T PRK06457 379 RHFRA-----------------------------------------------SGE-------QTF--------------- 389 (549)
T ss_pred HhCCC-----------------------------------------------CCC-------CeE---------------
Confidence 32211 000 000
Q ss_pred eeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccc-cEEEEE
Q psy14416 820 TTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLP-VILVIV 898 (1065)
Q Consensus 820 ~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~-~~~v~~ 898 (1065)
.+++-+|+| |+++++++ ||+++. | +++|+
T Consensus 390 -----------~~~~~~g~m----------------------------G~glpaai--Ga~la~--------p~~~~Vv- 419 (549)
T PRK06457 390 -----------IFSAWLGSM----------------------------GIGVPGSV--GASFAV--------ENKRQVI- 419 (549)
T ss_pred -----------EeCCCcchh----------------------------hhhHHHHH--HHHhcC--------CCCCeEE-
Confidence 011224444 99999988 999998 8 89999
Q ss_pred ccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchh
Q psy14416 899 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEA 978 (1065)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~ 978 (1065)
+++|||+| +|+.++|+|+ +++++|+++||+||+| |+.+...
T Consensus 420 --------------------------------~i~GDGsf-~~~~~eL~Ta-----~~~~lpi~ivV~NN~~-~g~i~~~ 460 (549)
T PRK06457 420 --------------------------------SFVGDGGF-TMTMMELITA-----KKYDLPVKIIIYNNSK-LGMIKFE 460 (549)
T ss_pred --------------------------------EEEcccHH-hhhHHHHHHH-----HHHCCCeEEEEEECCc-cchHHHH
Confidence 99999999 9999999999 9999999999999988 4544321
Q ss_pred hHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCcchhhh
Q psy14416 979 TYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKPQNFSW 1058 (1065)
Q Consensus 979 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~ 1058 (1065)
.+.. +. .......+++||.++|++||+++++|++.+||+++++++++. ++|+||||.+++++...+...+|
T Consensus 461 --q~~~--~~----~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~-~~p~lIeV~i~~~~~~~~~~~~~ 531 (549)
T PRK06457 461 --QEVM--GY----PEWGVDLYNPDFTKIAESIGFKGFRLEEPKEAEEIIEEFLNT-KGPAVLDAIVDPNERPMPPKLTF 531 (549)
T ss_pred --HHHh--cC----CcccccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhC-CCCEEEEEEeCccccCCCCeech
Confidence 1111 10 111223356899999999999999999999999999999986 89999999999888665544443
No 34
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=100.00 E-value=6.9e-75 Score=705.89 Aligned_cols=534 Identities=23% Similarity=0.331 Sum_probs=431.3
Q ss_pred ccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccccc
Q psy14416 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 345 (1065)
Q Consensus 267 ~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~ 345 (1065)
++++++|++.|+++||++|||+||+.+.+|++++.+ .+|++|.|+||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~~l~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l 80 (558)
T TIGR00118 1 MSGAEAIIESLKDEGVKTVFGYPGGAILPIYDALYNDSGIEHILVRHEQGAAHAADGYARASGKVGVVLVTSGPGATNLV 80 (558)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHH
Confidence 468999999999999999999999999999999974 6899999999999999999999999999999999999999999
Q ss_pred cccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecCh
Q psy14416 346 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPA 425 (1065)
Q Consensus 346 ~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~ 425 (1065)
+|+++|+.+++|||+|+|+++....+.+++|++||.++|+++|||+.++++++++.+.+++|++.|++.|+|||||+||.
T Consensus 81 ~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~ 160 (558)
T TIGR00118 81 TGIATAYMDSIPMVVFTGQVPTSLIGSDAFQEADILGITMPITKHSFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPK 160 (558)
T ss_pred HHHHHHHhcCCCEEEEecCCCccccCCCCCcccChhhhhcCccceeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q psy14416 426 NLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505 (1065)
Q Consensus 426 Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvIl 505 (1065)
|++.++++..... .... ........++++.+++++++|.+||||+|+
T Consensus 161 dv~~~~~~~~~~~--~~~~-------------------------------~~~~~~~~~~~~~i~~~~~~L~~AkrPvi~ 207 (558)
T TIGR00118 161 DVTTAEIEYPYPE--KVNL-------------------------------PGYRPTVKGHPLQIKKAAELINLAKKPVIL 207 (558)
T ss_pred hhhhhhccccccc--cccc-------------------------------cCCCCCCCCCHHHHHHHHHHHHhCCCcEEE
Confidence 9988776421100 0000 000111235677899999999999999999
Q ss_pred EccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccCCC
Q psy14416 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFGRA 578 (1065)
Q Consensus 506 vG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g~~ 578 (1065)
+|.++.++++.++|++|+|++|+||++|+++||.+|++||+++|. ....++++||+||.+|+++++..+..+.
T Consensus 208 ~G~g~~~~~a~~~l~~lae~l~~pv~tt~~~kg~~~e~hp~~~G~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~ 287 (558)
T TIGR00118 208 VGGGVIIAGASEELKELAERIQIPVTTTLMGLGSFPEDHPLSLGMLGMHGTKTANLAVHECDLIIAVGARFDDRVTGNLA 287 (558)
T ss_pred ECCCccccchHHHHHHHHHHhCCCEEEccccCCCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEECCCCCccccCchh
Confidence 999998888889999999999999999999999999999999883 3467789999999999999876544332
Q ss_pred ccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhh
Q psy14416 579 PRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILV 658 (1065)
Q Consensus 579 ~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~ 658 (1065)
.+.++.++||||.|+..+++.+..++.+.+|+..+|++|.+.+.... ......|.++++...++..... .
T Consensus 288 -~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~--~--- 357 (558)
T TIGR00118 288 -KFAPNAKIIHIDIDPAEIGKNVRVDIPIVGDARNVLEELLKKLFELK----ERKESAWLEQINKWKKEYPLKM--D--- 357 (558)
T ss_pred -hcCCCCcEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhhhhcc----ccCcHHHHHHHHHHHHhChhhc--c---
Confidence 24456789999999999998888999999999999999998875211 0123457665544332211110 0
Q ss_pred hhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCccc
Q psy14416 659 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 738 (1065)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~~ 738 (1065)
....++ + +..+++ .|.+.+|++++++.|+|++..|.
T Consensus 358 -------------------------~~~~~~-----~---~~~~~~-----------~l~~~l~~~~iv~~d~g~~~~~~ 393 (558)
T TIGR00118 358 -------------------------YTEEGI-----K---PQQVIE-----------ELSRVTKDEAIVTTDVGQHQMWA 393 (558)
T ss_pred -------------------------CCCCCc-----C---HHHHHH-----------HHHhhCCCCeEEEeCCcHHHHHH
Confidence 012245 6 667888 99999999999999998754443
Q ss_pred ccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccccc
Q psy14416 739 ETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGE 818 (1065)
Q Consensus 739 ~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 818 (1065)
..++.. ..| ..++
T Consensus 394 ~~~~~~-----------------------------------------------~~p-------~~~~------------- 406 (558)
T TIGR00118 394 AQFYPF-----------------------------------------------RKP-------RRFI------------- 406 (558)
T ss_pred HHhccc-----------------------------------------------CCC-------CeEE-------------
Confidence 322110 001 1111
Q ss_pred eeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEEE
Q psy14416 819 VTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 898 (1065)
Q Consensus 819 ~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 898 (1065)
++|-+|+| |+++++++ |++++. |+++|+
T Consensus 407 -------------~~~~~g~m----------------------------G~~l~aai--Ga~la~--------~~~~vv- 434 (558)
T TIGR00118 407 -------------TSGGLGTM----------------------------GFGLPAAI--GAKVAK--------PESTVI- 434 (558)
T ss_pred -------------eCCccccc----------------------------cchhhHHH--hhhhhC--------CCCcEE-
Confidence 23335555 99999988 999998 899999
Q ss_pred ccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchh
Q psy14416 899 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEA 978 (1065)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~ 978 (1065)
+++|||+| +|+.++++|+ +++++|+++||+||++ |+.+...
T Consensus 435 --------------------------------~~~GDG~f-~~~~~eL~ta-----~~~~l~~~~vv~NN~~-~~~~~~~ 475 (558)
T TIGR00118 435 --------------------------------CITGDGSF-QMNLQELSTA-----VQYDIPVKILILNNRY-LGMVRQW 475 (558)
T ss_pred --------------------------------EEEcchHH-hccHHHHHHH-----HHhCCCeEEEEEeCCc-hHHHHHH
Confidence 99999999 9999999999 9999999999999976 4433321
Q ss_pred hHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 979 TYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 979 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
. .....+... .....+.+||.++|++||+++++|++.+||+++++++++. ++|+||||.++++++..
T Consensus 476 q--~~~~~~~~~----~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~-~~p~liev~~~~~~~~~ 542 (558)
T TIGR00118 476 Q--ELFYEERYS----HTHMGSLPDFVKLAEAYGIKGIRIEKPEELDEKLKEALSS-NEPVLLDVVVDKPENVL 542 (558)
T ss_pred H--HHhcCCcee----eccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhC-CCCEEEEEEeCCccccc
Confidence 1 111111111 1222346999999999999999999999999999999987 89999999999877653
No 35
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=6.2e-75 Score=708.20 Aligned_cols=527 Identities=20% Similarity=0.261 Sum_probs=426.0
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
+++++++|++.|+++||+++||+||+++.+|++++++ ++|++|.++||++|+|||+||+|+||+|+||++|+|||++|+
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~ 81 (574)
T PRK09124 2 KQTVADYIAKTLEQAGVKRIWGVTGDSLNGLSDSLRRMGTIEWMHTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHL 81 (574)
T ss_pred CccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhccCCCcEEEeCcHHHHHHHHHHHHHhhCCcEEEEECCCCCHHHH
Confidence 4689999999999999999999999999999999976 479999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecC
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP 424 (1065)
++||++|+.+++|||+|+|++|.+..+++++|++||.++|+++|||+.++.+++++++.+++|++.|.+ ++|||||+||
T Consensus 82 ~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~Q~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~-~~gPV~l~iP 160 (574)
T PRK09124 82 INGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSNPEQLPRVLAIAMRKAIL-NRGVAVVVLP 160 (574)
T ss_pred HHHHHHHhhcCCCEEEEecCCccccCCCCCccccChhhhcccceeeeEEeCCHHHHHHHHHHHHHHHhc-CCCCEEEEeC
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 5699999999
Q ss_pred hhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEE
Q psy14416 425 ANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLV 504 (1065)
Q Consensus 425 ~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvI 504 (1065)
.|++..+++..... .. + ........++.+.+++++++|++||||+|
T Consensus 161 ~Dv~~~~~~~~~~~---~~-------~------------------------~~~~~~~~~~~~~i~~~~~~L~~AkrPvi 206 (574)
T PRK09124 161 GDVALKPAPERATP---HW-------Y------------------------HAPQPVVTPAEEELRKLAALLNGSSNITL 206 (574)
T ss_pred hhhhhCcccccccc---cc-------c------------------------cCCCCCCCCCHHHHHHHHHHHHcCCCCEE
Confidence 99988876532100 00 0 00111223567889999999999999999
Q ss_pred EEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccCC
Q psy14416 505 IIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFGR 577 (1065)
Q Consensus 505 lvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g~ 577 (1065)
|+|.++. ++.+++++|+|++|+||++|+++||.+|++||+++|. ....++++||+||.+|+++.+. .+
T Consensus 207 i~G~g~~--~a~~~l~~lae~l~~PV~tt~~gkg~~~~~hp~~~G~~G~~~~~~~~~~~~~aDlvl~lG~~~~~~---~~ 281 (574)
T PRK09124 207 LCGSGCA--GAHDELVALAETLKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGYHAMMNCDTLLMLGTDFPYR---QF 281 (574)
T ss_pred EECcChH--hHHHHHHHHHHHhCCceEEcccccccCCCCCcccccCCccCCCHHHHHHHHhCCEEEEECCCCCcc---cc
Confidence 9999874 5678999999999999999999999999999999873 3456788999999999987642 12
Q ss_pred CccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhh
Q psy14416 578 APRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVIL 657 (1065)
Q Consensus 578 ~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ 657 (1065)
+.++.++||||.|+..+++.+..++.|.+|++.+|++|.+.+.. .....|.+.+.+..+++++...+..
T Consensus 282 ---~~~~~~ii~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~- 350 (574)
T PRK09124 282 ---YPTDAKIIQIDINPGSLGRRSPVDLGLVGDVKATLAALLPLLEE-------KTDRKFLDKALEHYRKARKGLDDLA- 350 (574)
T ss_pred ---cCCCCcEEEeeCCHHHhCCCCCCCeEEEccHHHHHHHHHHhhhc-------cCChHHHHHHHHHHHHHHHhhhhhh-
Confidence 23456899999999999999999999999999999999887752 1123576666544333332221110
Q ss_pred hhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCcc
Q psy14416 658 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 737 (1065)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~ 737 (1065)
. ......|+ + +..+++ .|.+.+|++.+++.|+|++..|
T Consensus 351 -----------------~------~~~~~~~i-----~---~~~~~~-----------~l~~~l~~~~ivv~d~g~~~~~ 388 (574)
T PRK09124 351 -----------------V------PSDGGKPI-----H---PQYLAR-----------QISEFAADDAIFTCDVGTPTVW 388 (574)
T ss_pred -----------------c------ccCCCCcC-----C---HHHHHH-----------HHHhhcCCCcEEEEcCCHHHHH
Confidence 0 00112345 6 667888 9999999999999999887666
Q ss_pred cccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccccc
Q psy14416 738 DETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESG 817 (1065)
Q Consensus 738 ~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 817 (1065)
..+++.. . -|.+. +
T Consensus 389 ~~~~~~~-----~----~~~~~---------------------------------------------~------------ 402 (574)
T PRK09124 389 AARYLKM-----N----GKRRL---------------------------------------------L------------ 402 (574)
T ss_pred HHHhccc-----C----CCCeE---------------------------------------------E------------
Confidence 5433221 0 00000 0
Q ss_pred ceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEE
Q psy14416 818 EVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVI 897 (1065)
Q Consensus 818 ~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~ 897 (1065)
+++-+|+| |+++++++ ||+++. |+++|+
T Consensus 403 --------------~~~~~G~m----------------------------G~~lpaAi--Ga~la~--------p~r~vv 430 (574)
T PRK09124 403 --------------GSFNHGSM----------------------------ANAMPQAL--GAQAAH--------PGRQVV 430 (574)
T ss_pred --------------ecCCcccc----------------------------cchHHHHH--HHHHhC--------CCCeEE
Confidence 12224445 99999988 999998 999999
Q ss_pred EccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCch
Q psy14416 898 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 977 (1065)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~ 977 (1065)
+++|||+| +|+.++|+|+ +|+++|+++||+||+| |+.+..
T Consensus 431 ---------------------------------~i~GDGsf-~m~~~eL~Ta-----~~~~lpv~ivV~NN~~-~g~i~~ 470 (574)
T PRK09124 431 ---------------------------------ALSGDGGF-SMLMGDFLSL-----VQLKLPVKIVVFNNSV-LGFVAM 470 (574)
T ss_pred ---------------------------------EEecCcHH-hccHHHHHHH-----HHhCCCeEEEEEeCCc-cccHHH
Confidence 99999999 9999999999 9999999999999987 444322
Q ss_pred hhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 978 ATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
.. . ..+ . .......+++||.++|++||+++++|+|.+||+++|+++++. ++|+||||.++++++..
T Consensus 471 ~~--~--~~~-~---~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~-~~p~lIev~i~~~~~~~ 536 (574)
T PRK09124 471 EM--K--AGG-Y---LTDGTDLHNPDFAAIAEACGITGIRVEKASELDGALQRAFAH-DGPALVDVVTAKQELAM 536 (574)
T ss_pred HH--H--hcC-C---ccccCcCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhC-CCCEEEEEEecCcccCC
Confidence 11 1 111 1 011122366899999999999999999999999999999986 89999999999888653
No 36
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=1.2e-74 Score=706.37 Aligned_cols=534 Identities=22% Similarity=0.337 Sum_probs=430.5
Q ss_pred ccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccccc
Q psy14416 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 346 (1065)
Q Consensus 267 ~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~ 346 (1065)
++++++|++.|+++||++|||+||+.+.++++++.+.+|++|.|+||++|+|||+||+|+||+|+||++|+|||++|+++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l~ 80 (586)
T PRK06276 1 MKGAEAIIKALEAEGVKIIFGYPGGALLPFYDALYDSDLIHILTRHEQAAAHAADGYARASGKVGVCVATSGPGATNLVT 80 (586)
T ss_pred CcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHH
Confidence 47899999999999999999999999999999998778999999999999999999999999999999999999999999
Q ss_pred ccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 347 GMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 347 av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
||++|+.+++|||+|+|+.+..+.+.+++|++||.++|+++|||++++++++++++.+++|++.|+++|+|||||+||.|
T Consensus 81 ~i~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 160 (586)
T PRK06276 81 GIATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGIFMPITKHNFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKD 160 (586)
T ss_pred HHHHHHhcCCCEEEEeCCCCccccCCCCCccccHhhHHhhhcceEEecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEEEE
Q psy14416 427 LLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVII 506 (1065)
Q Consensus 427 v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvIlv 506 (1065)
++.++++....+ .+... .+ ....+...++.+.+++++++|++||||+|++
T Consensus 161 v~~~~~~~~~~~-~~~~~----~~-------------------------~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~ 210 (586)
T PRK06276 161 VQEGELDLEKYP-IPAKI----DL-------------------------PGYKPTTFGHPLQIKKAAELIAEAERPVILA 210 (586)
T ss_pred HHhhhhcccccc-ccccc----cc-------------------------cCCCCCCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 988776532111 00000 00 0001112356788999999999999999999
Q ss_pred ccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccCCCc
Q psy14416 507 GKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFGRAP 579 (1065)
Q Consensus 507 G~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g~~~ 579 (1065)
|.++.++++.+++++|+|++|+||++|+++||.+|++||+++|. ...+++++||+||.+|+++++..+.++ .
T Consensus 211 G~g~~~~~a~~~l~~lae~~~~pv~tt~~~kg~~p~~hp~~~G~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~-~ 289 (586)
T PRK06276 211 GGGVIISGASEELIELSELVKIPVCTTLMGKGAFPEDHPLALGMVGMHGTKAANYSVTESDVLIAIGCRFSDRTTGDI-S 289 (586)
T ss_pred CCCcCcccHHHHHHHHHHHHCCCEEEcCCCCccCCCCCcccccCCCCCCCHHHHHHHHcCCEEEEECCCCCccccCCc-c
Confidence 99998888899999999999999999999999999999999873 345788999999999999987654333 2
Q ss_pred cccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhhh
Q psy14416 580 RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILVI 659 (1065)
Q Consensus 580 ~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 659 (1065)
.+.++.++||||.|+..+++++..++.|.+|+..+|++|.+.+.... ......|.+.++...........
T Consensus 290 ~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~------ 359 (586)
T PRK06276 290 SFAPNAKIIHIDIDPAEIGKNVRVDVPIVGDAKNVLRDLLAELMKKE----IKNKSEWLERVKKLKKESIPRMD------ 359 (586)
T ss_pred ccCCCCeEEEEECCHHHhCCcCCCceEEecCHHHHHHHHHHhhhhhc----ccchHHHHHHHHHHHHhcccccc------
Confidence 34566789999999999998888999999999999999998775210 11234576555433322211100
Q ss_pred hccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCC-----cEEEEECCCCc
Q psy14416 660 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPV-----ILVIVNNNGIY 734 (1065)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~-----d~ilv~d~G~~ 734 (1065)
....++ + +..+++ .|.+.||+ +++|+.|+|++
T Consensus 360 ------------------------~~~~~l-----~---~~~~~~-----------~l~~~l~~~~~~~~~iv~~d~G~~ 396 (586)
T PRK06276 360 ------------------------FDDKPI-----K---PQRVIK-----------ELMEVLREIDPSKNTIITTDVGQN 396 (586)
T ss_pred ------------------------CCCCCc-----C---HHHHHH-----------HHHHhccccCCCCCeEEEeCCcHH
Confidence 011235 6 667888 99999998 99999999875
Q ss_pred CcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccc
Q psy14416 735 GGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIV 814 (1065)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 814 (1065)
..|...++.. ..| ..++
T Consensus 397 ~~~~~~~~~~-----------------------------------------------~~p-------~~~~--------- 413 (586)
T PRK06276 397 QMWMAHFFKT-----------------------------------------------SAP-------RSFI--------- 413 (586)
T ss_pred HHHHHHhccc-----------------------------------------------CCC-------CeEE---------
Confidence 5553322210 001 0111
Q ss_pred cccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccE
Q psy14416 815 ESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVI 894 (1065)
Q Consensus 815 ~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~ 894 (1065)
++|-+|+| |+++|+++ |++++. |++
T Consensus 414 -----------------~~~~~gsm----------------------------G~~lpaai--Ga~la~--------p~~ 438 (586)
T PRK06276 414 -----------------SSGGLGTM----------------------------GFGFPAAI--GAKVAK--------PDA 438 (586)
T ss_pred -----------------cCCCcccc----------------------------ccchhHHH--hhhhhc--------CCC
Confidence 12335555 99999988 999998 899
Q ss_pred EEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCC
Q psy14416 895 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 974 (1065)
Q Consensus 895 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~ 974 (1065)
+|+ +++|||+| +|+.++|+|+ +|+++|+++||+||+| |+.
T Consensus 439 ~Vv---------------------------------~i~GDGsf-~m~~~eL~Ta-----~~~~lpv~~vV~NN~~-~g~ 478 (586)
T PRK06276 439 NVI---------------------------------AITGDGGF-LMNSQELATI-----AEYDIPVVICIFDNRT-LGM 478 (586)
T ss_pred cEE---------------------------------EEEcchHh-hccHHHHHHH-----HHhCCCeEEEEEeCCc-hHH
Confidence 999 99999999 9999999999 9999999999999987 332
Q ss_pred CchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCC
Q psy14416 975 FDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSA 1049 (1065)
Q Consensus 975 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~ 1049 (1065)
.... ........ .......+.+||.++|++||+++++|+|.+||+++|+++++. ++|+||||.+++++
T Consensus 479 ~~~~--~~~~~~~~----~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~-~~p~lIeV~i~~~~ 546 (586)
T PRK06276 479 VYQW--QNLYYGKR----QSEVHLGETPDFVKLAESYGVKADRVEKPDEIKEALKEAIKS-GEPYLLDIIIDPAE 546 (586)
T ss_pred HHHH--HHHHhCCC----cccccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhC-CCCEEEEEEecccc
Confidence 2211 11111111 111223356999999999999999999999999999999976 89999999998765
No 37
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=100.00 E-value=8.4e-75 Score=705.94 Aligned_cols=528 Identities=20% Similarity=0.317 Sum_probs=425.6
Q ss_pred HHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC--CceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccccc
Q psy14416 269 ANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE--GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 346 (1065)
Q Consensus 269 ~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~--~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~ 346 (1065)
++++|++.|+++||++|||+||+.+.++++++.++ +|++|.+|||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus 1 ~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~~i~~v~~rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~ 80 (575)
T TIGR02720 1 ASAAVLKVLEAWGVDHIYGIPGGSFNSTMDALSAERDRIHYIQVRHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLN 80 (575)
T ss_pred CHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhcCCCCcEEEeccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHH
Confidence 36899999999999999999999999999999653 6999999999999999999999999999999999999999999
Q ss_pred ccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 347 GMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 347 av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
|+++|+.+++|||+|+|+.+....+.+.+|++||..+|+++|||+.++.+++++++.+++|++.|.+ ++|||||+||.|
T Consensus 81 ~i~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~id~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~iP~D 159 (575)
T TIGR02720 81 GLYDAKEDHVPVLALVGQVPTTGMNMDTFQEMNENPIYADVAVYNRTAMTAESLPHVIDEAIRRAYA-HNGVAVVTIPVD 159 (575)
T ss_pred HHHHHhhcCCCEEEEecCCccccCCCCCcceechhhhhhhcceEEEEeCCHHHHHHHHHHHHHHHhh-CCCCEEEEECcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 679999999999
Q ss_pred hhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEEEE
Q psy14416 427 LLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVII 506 (1065)
Q Consensus 427 v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvIlv 506 (1065)
++.++++.....+.+.. ........++++.+++++++|++||||+|++
T Consensus 160 v~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~v~~~~~~L~~AkrPvil~ 207 (575)
T TIGR02720 160 FGWQEIPDNDYYASSVS--------------------------------YQTPLLPAPDVEAVTRAVQTLKAAERPVIYY 207 (575)
T ss_pred hhhcccccccccccccc--------------------------------ccCCCCCCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 98777653221100000 0111234578889999999999999999999
Q ss_pred ccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccCCCc
Q psy14416 507 GKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFGRAP 579 (1065)
Q Consensus 507 G~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g~~~ 579 (1065)
|.+++ ++.++|.+|||++++||++|+++||.+|++||+++|. ...+.+++||+||.+|+++++... ..
T Consensus 208 G~g~~--~a~~~l~~lae~l~~PV~tt~~gkg~~~~~hpl~~G~~g~~~~~~~~~~l~~aDlvl~vG~~~~~~~~---~~ 282 (575)
T TIGR02720 208 GIGAR--KAGEELEALSEKLKIPLISTGLAKGIIEDRYPAYLGSAYRVAQKPANEALFQADLVLFVGNNYPFAEV---SK 282 (575)
T ss_pred Ccchh--hHHHHHHHHHHHhCCCEEEcccccccCCCCCcccccCCcCCCcHHHHHHHHhCCEEEEeCCCCCcccc---cc
Confidence 99987 5678999999999999999999999999999999883 345678999999999999865322 11
Q ss_pred cccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhhh
Q psy14416 580 RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILVI 659 (1065)
Q Consensus 580 ~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 659 (1065)
.+.+++.+||||.|+..+++++..++.|.+|+..+|++|.+.++.+ ....|...+....+++++..+..
T Consensus 283 ~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~---- 351 (575)
T TIGR02720 283 AFKNTKYFIQIDIDPAKLGKRHHTDIAVLADAKKALAAILAQVEPR-------ESTPWWQANVANVKNWRAYLASL---- 351 (575)
T ss_pred ccCCCceEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhcccc-------CChHHHHHHHHHHHHHHHHhhhh----
Confidence 2334455699999999999999999999999999999999887621 12346555443333333322111
Q ss_pred hccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCcccc
Q psy14416 660 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 739 (1065)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~~~ 739 (1065)
.. ....|+ + +..+++ .|.+.+|+|.+++.|.|++..|..
T Consensus 352 ---------------~~-------~~~~~i-----~---~~~~~~-----------~l~~~l~~d~ii~~D~g~~~~~~~ 390 (575)
T TIGR02720 352 ---------------ED-------KTEGPL-----Q---AYQVYR-----------AINKIAEDDAIYSIDVGDININSN 390 (575)
T ss_pred ---------------hc-------cCCCCc-----C---HHHHHH-----------HHHHhCCCCcEEEeCCcHHHHHHH
Confidence 00 112245 6 777888 999999999999999997666644
Q ss_pred cchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccccce
Q psy14416 740 TTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEV 819 (1065)
Q Consensus 740 ~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 819 (1065)
+++.. ..| +.++
T Consensus 391 ~~~~~-----------------------------------------------~~~-------~~~~-------------- 402 (575)
T TIGR02720 391 RHLKM-----------------------------------------------TPK-------NKWI-------------- 402 (575)
T ss_pred HhCCc-----------------------------------------------CCC-------CeEE--------------
Confidence 33221 000 0011
Q ss_pred eeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEEEc
Q psy14416 820 TTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVN 899 (1065)
Q Consensus 820 ~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~ 899 (1065)
.+|.+|+| |+++|+++ ||+++. |+++||
T Consensus 403 ------------~~~~~gsm----------------------------G~glpaAi--Ga~la~--------p~r~Vv-- 430 (575)
T TIGR02720 403 ------------TSNLFATM----------------------------GVGVPGAI--AAKLNY--------PDRQVF-- 430 (575)
T ss_pred ------------cCCCcchh----------------------------hchHHHHH--HHHHhC--------CCCcEE--
Confidence 12335555 99999999 999998 999999
Q ss_pred cCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhh
Q psy14416 900 NNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEAT 979 (1065)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~ 979 (1065)
+++|||+| +|+.++|+|+ +|+++|+++||+||+| |+.+...
T Consensus 431 -------------------------------~i~GDGsf-~m~~~eL~Ta-----vr~~lpi~~VV~NN~~-yg~i~~~- 471 (575)
T TIGR02720 431 -------------------------------NLAGDGAF-SMTMQDLLTQ-----VQYHLPVINIVFSNCT-YGFIKDE- 471 (575)
T ss_pred -------------------------------EEEcccHH-HhhHHHHHHH-----HHhCCCeEEEEEeCCc-cHHHHHH-
Confidence 99999999 9999999999 9999999999999988 5533322
Q ss_pred HhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHH--hcCCCCEEEEEEeCCCCCCCc
Q psy14416 980 YASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCL--QTTTRPSLINILINPSADRKP 1053 (1065)
Q Consensus 980 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~--~~~~~~~li~~~~~~~~~~~~ 1053 (1065)
+.. . .+. ......+++||.++|++||+++++|++.+||++++++++ +. ++|.||||.+++++-.++
T Consensus 472 ~~~-~-~~~-----~~~~~~~~~df~~iA~a~G~~~~~v~~~~el~~al~~a~~~~~-~~p~liev~i~~~~~~~~ 539 (575)
T TIGR02720 472 QED-T-NQP-----LIGVDFNDADFAKIAEGVGAVGFRVNKIEQLPAVFEQAKAIKQ-GKPVLIDAKITGDRPLPV 539 (575)
T ss_pred HHH-h-CCC-----cccccCCCCCHHHHHHHCCCEEEEeCCHHHHHHHHHHHHhhCC-CCcEEEEEEeCCCCCCCC
Confidence 111 1 111 111123569999999999999999999999999999999 65 899999999999875553
No 38
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=100.00 E-value=2e-74 Score=704.86 Aligned_cols=551 Identities=19% Similarity=0.259 Sum_probs=430.5
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 345 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~ 345 (1065)
+++++++|++.|+++||++|||+||+.+.+|++++.+.+|++|.|+||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 5 ~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~ 84 (588)
T PRK07525 5 KMTPSEAFVETLQAHGITHAFGIIGSAFMDASDLFPPAGIRFIDVAHEQNAGHMADGYTRVTGRMGMVIGQNGPGITNFV 84 (588)
T ss_pred cccHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhccCCCEEEecCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHH
Confidence 47999999999999999999999999999999999877899999999999999999999999999999999999999999
Q ss_pred cccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecCh
Q psy14416 346 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPA 425 (1065)
Q Consensus 346 ~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~ 425 (1065)
+|+++|+.+++|||+|+|+.+...++.+.+|++||.++|+++|||+.++++++++++.+++|++.|+++ +|||||+||.
T Consensus 85 ~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~i~~~~~~~~~i~rA~~~A~~~-~GPV~i~iP~ 163 (588)
T PRK07525 85 TAVATAYWAHTPVVLVTPQAGTKTIGQGGFQEAEQMPMFEDMTKYQEEVRDPSRMAEVLNRVFDKAKRE-SGPAQINIPR 163 (588)
T ss_pred HHHHHHhhcCCCEEEEeCCCCcccCCCCCCcccchhhhhhhheeEEEECCCHHHHHHHHHHHHHHHhcC-CCCEEEEcCh
Confidence 999999999999999999999999999999999999999999999999999999999999999999987 6999999999
Q ss_pred hhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q psy14416 426 NLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505 (1065)
Q Consensus 426 Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvIl 505 (1065)
|++.++++..... + .......+++..+++++++|.+||||+|+
T Consensus 164 Dv~~~~~~~~~~~--~-----------------------------------~~~~~~~~~~~~i~~a~~~L~~A~rPvil 206 (588)
T PRK07525 164 DYFYGVIDVEIPQ--P-----------------------------------VRLERGAGGEQSLAEAAELLSEAKFPVIL 206 (588)
T ss_pred hHhhhhcccccCc--c-----------------------------------ccCCCCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 9998776532100 0 00112235678899999999999999999
Q ss_pred EccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCccccc-------HHHHhhhcCCCEEEEeCCccccccccCCC
Q psy14416 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVS-------AARTHALQNADLVLLLGARLNWILHFGRA 578 (1065)
Q Consensus 506 vG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg-------~~~~~al~~aDlVI~iG~~~~~~~~~g~~ 578 (1065)
+|.++.++++.++|++|+|++|+||++|+++||.+|++||+++| ....+.+++||+||.+|+++++..+..+.
T Consensus 207 ~G~g~~~~~a~~~l~~lae~~~~pv~tT~~gkg~~p~~hpl~~G~~g~~g~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~ 286 (588)
T PRK07525 207 SGAGVVLSDAIEECKALAERLDAPVACGYLHNDAFPGSHPLWVGPLGYNGSKAAMELIAKADVVLALGTRLNPFGTLPQY 286 (588)
T ss_pred ECCCccccChHHHHHHHHHHhCCCeEEcccccccCCCCCccccccCcccCcHHHHHHHHhCCEEEEECCCCchhhccccc
Confidence 99999888889999999999999999999999999999999988 24556789999999999999875442211
Q ss_pred --ccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchh
Q psy14416 579 --PRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVI 656 (1065)
Q Consensus 579 --~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 656 (1065)
..+.++.++||||.|+..+++++..++.|++|+..+|++|.+.+.... .....+.+|.+.+......+.....+.-
T Consensus 287 ~~~~~~~~~~iI~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (588)
T PRK07525 287 GIDYWPKDAKIIQVDINPDRIGLTKKVSVGICGDAKAVARELLARLAERL--AGDAGREERKALIAAEKSAWEQELSSWD 364 (588)
T ss_pred ccccCCCCCeEEEEECCHHHhCCCCCCCceEecCHHHHHHHHHHhhhhhc--cccccchhhhhhhhhhHHHHHHHHHHHH
Confidence 124456899999999999999999999999999999999999885310 0111122233222211111111111000
Q ss_pred hhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCc
Q psy14416 657 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 736 (1065)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~ 736 (1065)
. ........-.++.+ .....++ + +..++. .|.+.+|+|.+++.|.|++..
T Consensus 365 ~--~~~~~~~~~~~~~~---------~~~~~~i-----~---~~~~~~-----------~l~~~l~~d~ivv~d~G~~~~ 414 (588)
T PRK07525 365 H--EDDDPGTDWNEEAR---------ARKPDYM-----H---PRQALR-----------EIQKALPEDAIVSTDIGNNCS 414 (588)
T ss_pred h--cccccccccccccc---------ccCCCCc-----C---HHHHHH-----------HHHHhCCCCcEEEECCcccHH
Confidence 0 00000000000000 0012246 7 778888 999999999999999998777
Q ss_pred ccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccc
Q psy14416 737 FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVES 816 (1065)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 816 (1065)
|..+++.. ..| +.++
T Consensus 415 ~~~~~~~~-----------------------------------------------~~p-------~~~~----------- 429 (588)
T PRK07525 415 IANSYLRF-----------------------------------------------EKG-------RKYL----------- 429 (588)
T ss_pred HHHHhccc-----------------------------------------------CCC-------CeEE-----------
Confidence 75543321 001 0111
Q ss_pred cceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEE
Q psy14416 817 GEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 896 (1065)
Q Consensus 817 ~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v 896 (1065)
+++-+|+| |+++|+++ |++++. |+++|
T Consensus 430 ---------------~~~~~g~m----------------------------G~glp~ai--Ga~la~--------p~r~v 456 (588)
T PRK07525 430 ---------------APGSFGNC----------------------------GYAFPAII--GAKIAC--------PDRPV 456 (588)
T ss_pred ---------------cccccccc----------------------------ccHHHHHH--HHHHhC--------CCCcE
Confidence 12224455 99999998 999998 99999
Q ss_pred EEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCc
Q psy14416 897 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 976 (1065)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~ 976 (1065)
+ +++|||+| +|+.++++|+ +++++|+++||+||+| |+...
T Consensus 457 v---------------------------------~i~GDG~f-~~~~~el~Ta-----~~~~lpv~ivV~NN~~-y~~~~ 496 (588)
T PRK07525 457 V---------------------------------GFAGDGAW-GISMNEVMTA-----VRHNWPVTAVVFRNYQ-WGAEK 496 (588)
T ss_pred E---------------------------------EEEcCchH-hccHHHHHHH-----HHhCCCeEEEEEeCch-hHHHH
Confidence 9 99999999 9999999999 9999999999999987 44322
Q ss_pred hhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhc--CCCCEEEEEEeCCCCC
Q psy14416 977 EATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQT--TTRPSLINILINPSAD 1050 (1065)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~--~~~~~li~~~~~~~~~ 1050 (1065)
... ... ..+. .......+.+||.++|++||+++++|++.+||+++|+++++. .++|+||||.++++..
T Consensus 497 ~~~-~~~-~~~~----~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~~p~lIev~~~~~~~ 566 (588)
T PRK07525 497 KNQ-VDF-YNNR----FVGTELDNNVSYAGIAEAMGAEGVVVDTQEELGPALKRAIDAQNEGKTTVIEIMCNQELG 566 (588)
T ss_pred HHH-HHH-hCCC----cccccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhcCCCCCcEEEEEEeccccC
Confidence 211 111 1111 111233456999999999999999999999999999999975 2589999999997764
No 39
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=2.3e-74 Score=701.99 Aligned_cols=533 Identities=21% Similarity=0.260 Sum_probs=428.9
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
.++++++|++.|+++||+++||+||+++.+++++++++ +|++|.||||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 2 ~~t~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~ 81 (578)
T PRK06546 2 AKTVAEQLVEQLVAAGVKRIYGIVGDSLNPIVDAVRRTGGIEWVHVRHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHL 81 (578)
T ss_pred CccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhccCCCeEEEeCcHHHHHHHHHhHHHhhCCceEEEECCCCcHHHH
Confidence 36899999999999999999999999999999999775 79999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecC
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP 424 (1065)
++|+++|+.+++|||+|+|+.|....+++++|++||.++|+++|||++++++++++++.+++|++.|.+ +||||||+||
T Consensus 82 ~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~Qe~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~lP 160 (578)
T PRK06546 82 INGLYDAHRSGAPVLAIASHIPSAQIGSGFFQETHPDRLFVECSGYCEMVSSAEQAPRVLHSAIQHAVA-GGGVSVVTLP 160 (578)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCccccCCCCccccChhhhcccceeeEeEeCCHHHHHHHHHHHHHHHhc-CCCCEEEEcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999995 6799999999
Q ss_pred hhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEE
Q psy14416 425 ANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLV 504 (1065)
Q Consensus 425 ~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvI 504 (1065)
.|++.++++..... .. + ........++++.+++++++|++||||+|
T Consensus 161 ~Dv~~~~~~~~~~~---~~------~-------------------------~~~~~~~~~~~~~i~~a~~~L~~A~rPvi 206 (578)
T PRK06546 161 GDIADEPAPEGFAP---SV------I-------------------------SPRRPTVVPDPAEVRALADAINEAKKVTL 206 (578)
T ss_pred hhhhhccccccccc---cc------c-------------------------ccCCCCCCCCHHHHHHHHHHHHcCCCcEE
Confidence 99988776532110 00 0 01111234678899999999999999999
Q ss_pred EEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccCC
Q psy14416 505 IIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFGR 577 (1065)
Q Consensus 505 lvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g~ 577 (1065)
++|.++. ++.+++++|+|++|+||++++++||.+|++||+++|. ..+.++++|||||.+|+++++. .|
T Consensus 207 i~G~g~~--~a~~~l~~lae~~g~Pv~~t~~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~lG~~~~~~---~~ 281 (578)
T PRK06546 207 FAGAGVR--GAHAEVLALAEKIKAPVGHSLRGKEWIQYDNPFDVGMSGLLGYGAAHEAMHEADLLILLGTDFPYD---QF 281 (578)
T ss_pred EECcchH--HHHHHHHHHHHHhCcceEECcccccCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEEcCCCChh---hc
Confidence 9999986 5678999999999999999999999999999999872 4567889999999999987642 12
Q ss_pred CccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhh
Q psy14416 578 APRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVIL 657 (1065)
Q Consensus 578 ~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ 657 (1065)
.++.++||||.|+..+++++..++.|.+|+..+|++|.+.+... ....|.+.+++..+.+.....+..
T Consensus 282 ----~~~~~~I~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~L~~~-------~~~~~~~~~~~~~~~~~~~~~~~~- 349 (578)
T PRK06546 282 ----LPDVRTAQVDIDPEHLGRRTRVDLAVHGDVAETIRALLPLVKEK-------TDRRFLDRMLKKHARKLEKVVGAY- 349 (578)
T ss_pred ----CCCCcEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHhhccc-------CChHHHHHHHHHHHHHHhhhhhhh-
Confidence 34467999999999999988899999999999999999988621 124576655443332221111000
Q ss_pred hhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCcc
Q psy14416 658 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 737 (1065)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~ 737 (1065)
.. ......|+ + +..+++ .|.+.+|++.+++.|.|++..|
T Consensus 350 -----------------~~-----~~~~~~~l-----~---~~~~~~-----------~l~~~l~~~~ivv~d~G~~~~~ 388 (578)
T PRK06546 350 -----------------TR-----KVEKHTPI-----H---PEYVAS-----------ILDELAADDAVFTVDTGMCNVW 388 (578)
T ss_pred -----------------cc-----ccCCCCCc-----C---HHHHHH-----------HHHHhccCCcEEEECCcHHHHH
Confidence 00 00112345 6 667888 9999999999999999986666
Q ss_pred cccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccccc
Q psy14416 738 DETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESG 817 (1065)
Q Consensus 738 ~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 817 (1065)
...++.. . .+ +.++
T Consensus 389 ~~~~~~~------~-----------------------------------------~~-------~~~~------------ 402 (578)
T PRK06546 389 AARYITP------N-----------------------------------------GR-------RRVI------------ 402 (578)
T ss_pred HHHhcCC------C-----------------------------------------CC-------ceEE------------
Confidence 4432210 0 00 0000
Q ss_pred ceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEE
Q psy14416 818 EVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVI 897 (1065)
Q Consensus 818 ~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~ 897 (1065)
+++-+|+| |+++++++ ||+++. |+++||
T Consensus 403 --------------~s~~~gsm----------------------------G~~~paAi--Ga~la~--------p~~~vv 430 (578)
T PRK06546 403 --------------GSFRHGSM----------------------------ANALPHAI--GAQLAD--------PGRQVI 430 (578)
T ss_pred --------------ccCCcccc----------------------------cchhHHHH--HHHHhC--------CCCcEE
Confidence 12224444 99999988 999998 999999
Q ss_pred EccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCch
Q psy14416 898 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 977 (1065)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~ 977 (1065)
+++|||+| +|+.++++|+ +++++|+++||+||+| |+.+..
T Consensus 431 ---------------------------------~i~GDGsf-~~~~~el~Ta-----~~~~lpv~~vV~NN~~-~g~i~~ 470 (578)
T PRK06546 431 ---------------------------------SMSGDGGL-SMLLGELLTV-----KLYDLPVKVVVFNNST-LGMVKL 470 (578)
T ss_pred ---------------------------------EEEcCchH-hhhHHHHHHH-----HHhCCCeEEEEEECCc-cccHHH
Confidence 99999999 9999999999 9999999999999987 554432
Q ss_pred hhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCcchhh
Q psy14416 978 ATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKPQNFS 1057 (1065)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~ 1057 (1065)
... . .+. .......+++||.++|++||+++.+|++.+||+++++++++. ++|+||||.+++++...+ -+.
T Consensus 471 ~q~---~-~~~----~~~~~~~~~~df~~lA~a~G~~~~~v~~~~el~~al~~a~~~-~gp~lIev~~~~~~~~~~-~~~ 540 (578)
T PRK06546 471 EML---V-DGL----PDFGTDHPPVDYAAIAAALGIHAVRVEDPKDVRGALREAFAH-PGPALVDVVTDPNALSIP-PTI 540 (578)
T ss_pred HHH---h-cCC----CcccccCCCCCHHHHHHHCCCeeEEeCCHHHHHHHHHHHHhC-CCCEEEEEEeCCCcccCC-Ccc
Confidence 211 1 111 111223467999999999999999999999999999999986 999999999998875433 244
Q ss_pred hh
Q psy14416 1058 WL 1059 (1065)
Q Consensus 1058 ~~ 1059 (1065)
|.
T Consensus 541 ~~ 542 (578)
T PRK06546 541 TG 542 (578)
T ss_pred cH
Confidence 44
No 40
>PRK07524 hypothetical protein; Provisional
Probab=100.00 E-value=3.4e-74 Score=696.45 Aligned_cols=520 Identities=23% Similarity=0.311 Sum_probs=415.4
Q ss_pred cHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccccccc
Q psy14416 268 SANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGG 347 (1065)
Q Consensus 268 ~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~a 347 (1065)
+++++|++.|+++||+++||+||+.++++++++.+++|++|.|+||++|+|||+||+|+||||+||++|+|||++|+++|
T Consensus 3 ~~a~~l~~~L~~~Gv~~vFg~pG~~~~~~~dal~~~~i~~i~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~~~g 82 (535)
T PRK07524 3 TCGEALVRLLEAYGVETVFGIPGVHTVELYRGLAGSGIRHVTPRHEQGAGFMADGYARVSGKPGVCFIITGPGMTNIATA 82 (535)
T ss_pred cHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhcCCcEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHH
Confidence 78999999999999999999999999999999987799999999999999999999999999999999999999999999
Q ss_pred cccccccCcceEeecCCCccCCCCCC--CCCc-cChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecC
Q psy14416 348 MANAQINCWPMLVIGGSCAQDHEGIG--GFQE-CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424 (1065)
Q Consensus 348 v~eA~~~~vPLlvItg~~p~~~~g~g--a~Q~-idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP 424 (1065)
|++|+.+++|||+|+|+.+.+..+++ .+|+ +||.++|+++|||+.++.+++++++.+++|++.|+++|+|||||+||
T Consensus 83 i~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (535)
T PRK07524 83 MGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGVAAFSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIP 162 (535)
T ss_pred HHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhhceeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 99999999999999999998877753 6676 59999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEE
Q psy14416 425 ANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLV 504 (1065)
Q Consensus 425 ~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvI 504 (1065)
.|++.++++..... + ........++++.+++++++|++||||+|
T Consensus 163 ~Dv~~~~~~~~~~~--~----------------------------------~~~~~~~~~~~~~i~~~~~~L~~AkrPvi 206 (535)
T PRK07524 163 LDVLAAPADHLLPA--P----------------------------------PTRPARPGPAPAALAQAAERLAAARRPLI 206 (535)
T ss_pred HhHHhcccccccCc--c----------------------------------cccCCCCCCCHHHHHHHHHHHHhCCCcEE
Confidence 99998887532110 0 00111234678899999999999999999
Q ss_pred EEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-----HHHhhhcCCCEEEEeCCccccccccC-CC
Q psy14416 505 IIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-----ARTHALQNADLVLLLGARLNWILHFG-RA 578 (1065)
Q Consensus 505 lvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-----~~~~al~~aDlVI~iG~~~~~~~~~g-~~ 578 (1065)
++|.++. ++.++|.+|||++++||++|+++||.+|++||+++|. ...++++++|+||.+|+++....... +.
T Consensus 207 l~G~g~~--~a~~~l~~lae~l~~pV~tt~~~kg~~p~~hp~~~G~~~~~~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~ 284 (535)
T PRK07524 207 LAGGGAL--AAAAALRALAERLDAPVALTINAKGLLPAGHPLLLGASQSLPAVRALIAEADVVLAVGTELGETDYDVYFD 284 (535)
T ss_pred EECCChH--HHHHHHHHHHHHHCCCEEEcccccccCCCCChhhccCCCCCHHHHHHHHhCCEEEEeCCCcCccccccccc
Confidence 9999986 5678999999999999999999999999999999973 45677899999999999986543211 22
Q ss_pred ccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhh
Q psy14416 579 PRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILV 658 (1065)
Q Consensus 579 ~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~ 658 (1065)
..+.++.++||||.|+..+++.+..++.|.+|++.+|++|.+.++.+ .....|.....+ ++++...+..
T Consensus 285 ~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~~------~~~~~~~~~~~~---~~~~~~~~~~-- 353 (535)
T PRK07524 285 GGFPLPGELIRIDIDPDQLARNYPPALALVGDARAALEALLARLPGQ------AAAADWGAARVA---ALRQALRAEW-- 353 (535)
T ss_pred cccCCCCCEEEEECCHHHhCCCcCCCceEecCHHHHHHHHHHhcccc------CCchhhHHHHHH---HHHHhchhhc--
Confidence 23455678999999999999998999999999999999999987631 112346432111 1111111110
Q ss_pred hhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCccc
Q psy14416 659 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 738 (1065)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~~ 738 (1065)
. ..+. . +..+++ .|.+.+| +.+++.|.|++..|.
T Consensus 354 -------------------------~-~~~~-----~---~~~~~~-----------~l~~~l~-~~~i~~d~g~~~~~~ 387 (535)
T PRK07524 354 -------------------------D-PLTA-----A---QVALLD-----------TILAALP-DAIFVGDSTQPVYAG 387 (535)
T ss_pred -------------------------c-cccc-----C---HHHHHH-----------HHHHhCC-CCEEEeCCcHHHHHH
Confidence 0 0112 3 445778 8999998 577888887654443
Q ss_pred ccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccccc
Q psy14416 739 ETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGE 818 (1065)
Q Consensus 739 ~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 818 (1065)
.+++.. ..| +.+
T Consensus 388 ~~~~~~-----------------------------------------------~~p-------~~~-------------- 399 (535)
T PRK07524 388 NLYFDA-----------------------------------------------DAP-------RRW-------------- 399 (535)
T ss_pred HHhccc-----------------------------------------------CCC-------Cce--------------
Confidence 322110 001 011
Q ss_pred eeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEEE
Q psy14416 819 VTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 898 (1065)
Q Consensus 819 ~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 898 (1065)
+++++-+|+| |+++++++ ||+++. |+++||
T Consensus 400 -----------~~~~~~~g~m----------------------------G~~lp~ai--Ga~lA~--------p~~~vv- 429 (535)
T PRK07524 400 -----------FNASTGYGTL----------------------------GYGLPAAI--GAALGA--------PERPVV- 429 (535)
T ss_pred -----------EeCCCCcccc----------------------------cchHHHHH--HHHHhC--------CCCcEE-
Confidence 1112335555 99999888 999998 999999
Q ss_pred ccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchh
Q psy14416 899 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEA 978 (1065)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~ 978 (1065)
+++|||+| +|+.++++|+ +++++|+++||+||++ |+.+...
T Consensus 430 --------------------------------~i~GDG~f-~~~~~el~ta-----~~~~lpi~~vV~NN~~-~g~i~~~ 470 (535)
T PRK07524 430 --------------------------------CLVGDGGL-QFTLPELASA-----VEADLPLIVLLWNNDG-YGEIRRY 470 (535)
T ss_pred --------------------------------EEEcchHH-hhhHHHHHHH-----HHhCCCeEEEEEECCc-hHHHHHH
Confidence 99999999 9999999999 9999999999999987 4322221
Q ss_pred hHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCC
Q psy14416 979 TYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPS 1048 (1065)
Q Consensus 979 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~ 1048 (1065)
. ... +. .+.....+++||.++|++||+++++|++.+||+++|+++++. ++|+||||.+++-
T Consensus 471 ~--~~~--~~----~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~-~~p~liev~~~~~ 531 (535)
T PRK07524 471 M--VAR--DI----EPVGVDPYTPDFIALARAFGCAAERVADLEQLQAALRAAFAR-PGPTLIEVDQACW 531 (535)
T ss_pred H--HHh--cC----CccccCCCCCCHHHHHHHCCCcEEEeCCHHHHHHHHHHHHhC-CCCEEEEEECCcc
Confidence 1 100 11 122233467999999999999999999999999999999986 9999999999863
No 41
>PRK08266 hypothetical protein; Provisional
Probab=100.00 E-value=8.2e-74 Score=694.50 Aligned_cols=525 Identities=24% Similarity=0.320 Sum_probs=422.3
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC--CceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE--GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 342 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~--~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~ 342 (1065)
+.++++++|++.|+++||+++||+||+++.+|++++.+. +|++|.++||++|+|||+||+|+||||+||++|+|||++
T Consensus 2 ~~~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~ 81 (542)
T PRK08266 2 TTMTGGEAIVAGLVAHGVDTVFGLPGAQLYWLFDALYKAGDRIRVIHTRHEQAAGYMAFGYARSTGRPGVCSVVPGPGVL 81 (542)
T ss_pred CCCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhcCCCCeEEeeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHH
Confidence 357999999999999999999999999999999999653 799999999999999999999999999999999999999
Q ss_pred ccccccccccccCcceEeecCCCccCCCCCCC--CCc-cChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEE
Q psy14416 343 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGG--FQE-CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVS 419 (1065)
Q Consensus 343 N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga--~Q~-idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV 419 (1065)
|+++|+++|+.+++|||+|+|+++....+++. +|+ +||.++|+++|||+.++.+++++++.+++|++.|+++++|||
T Consensus 82 N~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV 161 (542)
T PRK08266 82 NAGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPDQLATLRSFTKWAERIEHPSEAPALVAEAFQQMLSGRPRPV 161 (542)
T ss_pred HHHHHHHHHHhhCCCEEEEecCCChhhccCCCCcceecccHhhHHhhhcceEEEeCCHHHHHHHHHHHHHHHhhCCCCcE
Confidence 99999999999999999999999988877654 566 599999999999999999999999999999999999999999
Q ss_pred EEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhC
Q psy14416 420 YLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEA 499 (1065)
Q Consensus 420 ~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~A 499 (1065)
||+||.|++.++++..... . ........++.+.+++++++|++|
T Consensus 162 ~l~iP~dv~~~~~~~~~~~---~---------------------------------~~~~~~~~~~~~~i~~~~~~L~~A 205 (542)
T PRK08266 162 ALEMPWDVFGQRAPVAAAP---P---------------------------------LRPAPPPAPDPDAIAAAAALIAAA 205 (542)
T ss_pred EEEeCHhHhhCcccccccc---c---------------------------------ccCCCCCCCCHHHHHHHHHHHHhC
Confidence 9999999988776432110 0 001123356788899999999999
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-HHHhhhcCCCEEEEeCCccccccccCCC
Q psy14416 500 KAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-ARTHALQNADLVLLLGARLNWILHFGRA 578 (1065)
Q Consensus 500 krPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-~~~~al~~aDlVI~iG~~~~~~~~~g~~ 578 (1065)
|||+|++|.++. ++.++|.+|+|++|+||++|+++||.++++||+++|. ....++++||+||.+|+++.+. ...|.
T Consensus 206 krPvIv~G~g~~--~a~~~l~~lae~~g~pv~tt~~~kg~~~~~hp~~~g~~~~~~~~~~aDlvl~lG~~~~~~-~~~~~ 282 (542)
T PRK08266 206 KNPMIFVGGGAA--GAGEEIRELAEMLQAPVVAFRSGRGIVSDRHPLGLNFAAAYELWPQTDVVIGIGSRLELP-TFRWP 282 (542)
T ss_pred CCCEEEECCChh--hHHHHHHHHHHHHCCCEEEeccccccCCCCCccccCCHHHHHHHHhCCEEEEeCCCcCcc-ccccc
Confidence 999999999864 6788999999999999999999999999999999985 3456788999999999999876 44443
Q ss_pred ccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhh
Q psy14416 579 PRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILV 658 (1065)
Q Consensus 579 ~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~ 658 (1065)
. +.++.++||||.|+..+++ +..++.|.+|++.+|++|.+.+++.. .....|...+...+..+.....
T Consensus 283 ~-~~~~~~~i~id~d~~~~~~-~~~~~~i~~D~~~~l~~L~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~----- 350 (542)
T PRK08266 283 W-RPDGLKVIRIDIDPTEMRR-LKPDVAIVADAKAGTAALLDALSKAG-----SKRPSRRAELRELKAAARQRIQ----- 350 (542)
T ss_pred c-cCCCCcEEEEECCHHHhCC-cCCCceEecCHHHHHHHHHHhhhhcc-----cCchHHHHHHHHHHHhhhhccc-----
Confidence 2 3445789999999999998 88899999999999999998876210 1224566655443322111100
Q ss_pred hhccCCccCCCCccccccccccCccccccceEEeeccccccc-ccccccccccccchhhhhhcCCCcEEEEECCCCcCcc
Q psy14416 659 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIY-GGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 737 (1065)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~-~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~ 737 (1065)
++ + +. .+++ .|.+.+|++.+++.|+|++..|
T Consensus 351 -----------------------------~~-----~---~~~~~~~-----------~l~~~lp~d~ivv~d~g~~~~~ 382 (542)
T PRK08266 351 -----------------------------AV-----Q---PQASYLR-----------AIREALPDDGIFVDELSQVGFA 382 (542)
T ss_pred -----------------------------cC-----C---HHHHHHH-----------HHHHhcCCCcEEEeCCcHHHHH
Confidence 11 2 22 3577 8999999999999998765444
Q ss_pred cccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccccc
Q psy14416 738 DETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESG 817 (1065)
Q Consensus 738 ~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 817 (1065)
..+++.. ..| ++ +
T Consensus 383 ~~~~~~~-----------------------------------------------~~~----~~---~------------- 395 (542)
T PRK08266 383 SWFAFPV-----------------------------------------------YAP----RT---F------------- 395 (542)
T ss_pred HHHhccc-----------------------------------------------CCC----Cc---E-------------
Confidence 3321110 000 00 0
Q ss_pred ceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEE
Q psy14416 818 EVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVI 897 (1065)
Q Consensus 818 ~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~ 897 (1065)
-++|.+|+| |+++++++ |++++. |+++|+
T Consensus 396 -------------~~~~~~Gsm----------------------------G~~lp~ai--Ga~la~--------p~~~vv 424 (542)
T PRK08266 396 -------------VTCGYQGTL----------------------------GYGFPTAL--GAKVAN--------PDRPVV 424 (542)
T ss_pred -------------EeCCCCccc----------------------------ccHHHHHH--HHHHhC--------CCCcEE
Confidence 023445555 99999988 999998 999999
Q ss_pred EccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCch
Q psy14416 898 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 977 (1065)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~ 977 (1065)
+++|||+| +|+.++++|+ +++++|+++||+||+| |+....
T Consensus 425 ---------------------------------~v~GDG~f-~~~~~eL~ta-----~~~~lpv~ivv~NN~~-y~~~~~ 464 (542)
T PRK08266 425 ---------------------------------SITGDGGF-MFGVQELATA-----VQHNIGVVTVVFNNNA-YGNVRR 464 (542)
T ss_pred ---------------------------------EEEcchhh-hccHHHHHHH-----HHhCCCeEEEEEeCCc-chHHHH
Confidence 99999999 9999999999 9999999999999988 442221
Q ss_pred hhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCcc
Q psy14416 978 ATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKPQ 1054 (1065)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~~ 1054 (1065)
. ... ...+.. .....+.+||.++|++||+++++|++.+||+++++++++. ++|+||||.|++++..+++
T Consensus 465 ~-~~~-~~~~~~-----~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~-~~p~liev~i~~~~~~~~~ 533 (542)
T PRK08266 465 D-QKR-RFGGRV-----VASDLVNPDFVKLAESFGVAAFRVDSPEELRAALEAALAH-GGPVLIEVPVPRGSEASPW 533 (542)
T ss_pred H-HHH-hcCCCc-----ccCCCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhC-CCcEEEEEEecCCCCcccc
Confidence 1 111 111111 1122246899999999999999999999999999999976 8999999999998887653
No 42
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=1.6e-73 Score=696.30 Aligned_cols=545 Identities=23% Similarity=0.278 Sum_probs=426.4
Q ss_pred ccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 264 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 264 ~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
+..++++++|++.|+++||+++||+|+... +.+++.+++|++|.||||++|+|||+||+|+||+|+||++|+|||++|
T Consensus 11 ~~~~~~a~~i~~~L~~~GV~~vFG~~~~~~--~~~~~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N 88 (578)
T PRK06112 11 TLNGTVAHAIARALKRHGVEQIFGQSLPSA--LFLAAEAIGIRQIAYRTENAGGAMADGYARVSGKVAVVTAQNGPAATL 88 (578)
T ss_pred ccCcCHHHHHHHHHHHCCCCEEeecccchH--hHHHHhhcCCcEEEeccHHHHHHHHHHHHHHhCCCEEEEeCCCCcHHH
Confidence 357899999999999999999999985532 345566678999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
+++||++|+.+++|||+|+|+++....+++.+|++||..+|+++|||+.++.+++++++.+++|++.|+++++|||||+|
T Consensus 89 ~~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~i 168 (578)
T PRK06112 89 LVAPLAEALKASVPIVALVQDVNRDQTDRNAFQELDHIALFQSCTKWVRRVTVAERIDDYVDQAFTAATSGRPGPVVLLL 168 (578)
T ss_pred HHHHHHHHhhcCCCEEEEecCCccccCCCCCccccChhhhhccccceEEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++.++++.+... .+... .........+++..+++++++|++||||+
T Consensus 169 P~Dv~~~~~~~~~~~-~~~~~------------------------------~~~~~~~~~~~~~~i~~~~~~L~~AkrPv 217 (578)
T PRK06112 169 PADLLTAAAAAPAAP-RSNSL------------------------------GHFPLDRTVPAPQRLAEAASLLAQAQRPV 217 (578)
T ss_pred CHhHhhCccccccCc-ccccc------------------------------cCCCCCCCCCCHHHHHHHHHHHHcCCCcE
Confidence 999998876532111 00000 00111123467888999999999999999
Q ss_pred EEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH------------HHHhhhcCCCEEEEeCCcccc
Q psy14416 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA------------ARTHALQNADLVLLLGARLNW 571 (1065)
Q Consensus 504 IlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~------------~~~~al~~aDlVI~iG~~~~~ 571 (1065)
|++|.++.++++.+++.+|+|++|+||++|+++||.+|++||+++|. ...+++++||+||.+|+++++
T Consensus 218 il~G~g~~~~~a~~~l~~lae~lg~pV~~t~~~kg~~p~~hp~~~G~~g~~~~~~~~~~~~~~~l~~aDlvl~lG~~~~~ 297 (578)
T PRK06112 218 VVAGGGVHISGASAALAALQSLAGLPVATTNMGKGAVDETHPLSLGVVGSLMGPRSPGRHLRDLVREADVVLLVGTRTNQ 297 (578)
T ss_pred EEECCCccccchHHHHHHHHHHhCCCEEEcccccccCCCCCccccccccccCCCccchHHHHHHHHhCCEEEEECCCCCc
Confidence 99999998888889999999999999999999999999999998873 345678899999999999988
Q ss_pred ccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhc
Q psy14416 572 ILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQV 651 (1065)
Q Consensus 572 ~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~ 651 (1065)
+.+.+|. .+.++.++||||.|+..+++.+. ++.|++|+..+|++|.+.+...........+..|...+.+..+...+.
T Consensus 298 ~~~~~~~-~~~~~~~~i~id~d~~~~~~~~~-~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (578)
T PRK06112 298 NGTDSWS-LYPEQAQYIHIDVDGEEVGRNYE-ALRLVGDARLTLAALTDALRGRDLAARAGRRAALEPAIAAGREAHRED 375 (578)
T ss_pred ccccccc-ccCCCCeEEEEECChHHhCcccc-ceEEEeCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhhhhh
Confidence 7665553 24456789999999999888776 799999999999999987753211111112344554444332222111
Q ss_pred ccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECC
Q psy14416 652 KLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNN 731 (1065)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~ 731 (1065)
..+. .. ....++ + +..+++ .|.+.+|++++++.|+
T Consensus 376 ~~~~-------------------~~-------~~~~~i-----~---~~~v~~-----------~l~~~l~~~~ivv~d~ 410 (578)
T PRK06112 376 SAPV-------------------AL-------SDASPI-----R---PERIMA-----------ELQAVLTGDTIVVADA 410 (578)
T ss_pred hhhh-------------------hc-------CCCCCc-----C---HHHHHH-----------HHHHhCCCCCEEEEcc
Confidence 1111 00 112245 6 777888 9999999999999999
Q ss_pred CCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccc
Q psy14416 732 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYA 811 (1065)
Q Consensus 732 G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 811 (1065)
|++..|...++.. ..| + ..+
T Consensus 411 g~~~~~~~~~~~~-----------------------------------------------~~~-----~-~~~------- 430 (578)
T PRK06112 411 SYSSIWVANFLTA-----------------------------------------------RRA-----G-MRF------- 430 (578)
T ss_pred cHHHHHHHHhcCc-----------------------------------------------cCC-----C-ceE-------
Confidence 8765553322210 000 0 000
Q ss_pred ccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheecccccccc
Q psy14416 812 SIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVL 891 (1065)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~ 891 (1065)
+ +++-+|+| |+++++++ |++++.
T Consensus 431 ------------------~-~~~g~gsm----------------------------G~~l~~ai--Ga~la~-------- 453 (578)
T PRK06112 431 ------------------L-TPRGLAGL----------------------------GWGVPMAI--GAKVAR-------- 453 (578)
T ss_pred ------------------E-CCCCcccc----------------------------ccHHHHHH--HHHhhC--------
Confidence 0 01113444 88888888 999998
Q ss_pred ccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcc
Q psy14416 892 PVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGI 971 (1065)
Q Consensus 892 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~ 971 (1065)
|+++|| +++|||+| +|+.++++|+ +++++|+++||+||++
T Consensus 454 ~~~~vv---------------------------------~i~GDGsf-~~~~~el~ta-----~~~~l~~~~vv~NN~~- 493 (578)
T PRK06112 454 PGAPVI---------------------------------CLVGDGGF-AHVWAELETA-----RRMGVPVTIVVLNNGI- 493 (578)
T ss_pred CCCcEE---------------------------------EEEcchHH-HhHHHHHHHH-----HHhCCCeEEEEEeCCc-
Confidence 899999 99999999 9999999999 9999999999999975
Q ss_pred cCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 972 YGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 972 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
|+...... .... +. .......+++||.++|++||+++++|++.+||+++|+++++. ++|+||||++++++..
T Consensus 494 ~g~~~~~~--~~~~-~~----~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~-~gp~lIev~~~~~~~p 565 (578)
T PRK06112 494 LGFQKHAE--TVKF-GT----HTDACHFAAVDHAAIARACGCDGVRVEDPAELAQALAAAMAA-PGPTLIEVITDPSAFP 565 (578)
T ss_pred cCCEEecc--cccc-CC----ccccCcCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhC-CCCEEEEEEcCcccCC
Confidence 55433211 0000 10 011222357999999999999999999999999999999986 8999999999988776
Q ss_pred Cc
Q psy14416 1052 KP 1053 (1065)
Q Consensus 1052 ~~ 1053 (1065)
+.
T Consensus 566 ~~ 567 (578)
T PRK06112 566 PI 567 (578)
T ss_pred Cc
Confidence 43
No 43
>PRK06154 hypothetical protein; Provisional
Probab=100.00 E-value=2.3e-73 Score=691.09 Aligned_cols=532 Identities=21% Similarity=0.313 Sum_probs=425.4
Q ss_pred ccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHh--CCCeEEEEeccccc
Q psy14416 264 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLT--KKPGVCLVVSGPGL 341 (1065)
Q Consensus 264 ~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~t--gkpgv~~~tsGpG~ 341 (1065)
+..++++++|++.|+++||+++||+|| .++++++.+.+|++|.||||++|+|||+||+|+| |+|+||++|+|||+
T Consensus 17 ~~~~~~a~~l~~~L~~~GV~~vFGip~---~~l~dal~~~~i~~i~~rhE~~A~~mAdgyar~t~g~~~gv~~~t~GPG~ 93 (565)
T PRK06154 17 AKTMKVAEAVAEILKEEGVELLFGFPV---NELFDAAAAAGIRPVIARTERVAVHMADGYARATSGERVGVFAVQYGPGA 93 (565)
T ss_pred cCcccHHHHHHHHHHHcCCCEEEeCcC---HHHHHHHHhcCCeEEeeCcHHHHHHHHHHHHHhcCCCCCEEEEECCCccH
Confidence 456799999999999999999999995 4889999878899999999999999999999999 49999999999999
Q ss_pred cccccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEE
Q psy14416 342 LHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYL 421 (1065)
Q Consensus 342 ~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L 421 (1065)
+|+++||++|+.+++|||+|+|+.+....+.+ +.+||.++|+++|||+.++.+++++++.+++|++.|+++|+|||||
T Consensus 94 ~N~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~--~~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~s~~~GPV~l 171 (565)
T PRK06154 94 ENAFGGVAQAYGDSVPVLFLPTGYPRGSTDVA--PNFESLRNYRHITKWCEQVTLPDEVPELMRRAFTRLRNGRPGPVVL 171 (565)
T ss_pred HHHHHHHHHHhhcCCCEEEEeCCCCcccccCC--CCcchhhhHhhcceeEEECCCHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 99999999999999999999999998765544 3578999999999999999999999999999999999999999999
Q ss_pred ecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCC
Q psy14416 422 DFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKA 501 (1065)
Q Consensus 422 ~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~Akr 501 (1065)
+||.|++.++++..... .. ........++.+.+++++++|.+|||
T Consensus 172 ~iP~Dv~~~~~~~~~~~---~~--------------------------------~~~~~~~~~~~~~i~~aa~~L~~A~r 216 (565)
T PRK06154 172 ELPVDVLAEELDELPLD---HR--------------------------------PSRRSRPGADPVEVVEAAALLLAAER 216 (565)
T ss_pred ecchHHhhhhccccccc---cc--------------------------------CCCCCCCCCCHHHHHHHHHHHHhCCC
Confidence 99999988776421110 00 00112235678899999999999999
Q ss_pred cEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccc
Q psy14416 502 PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILH 574 (1065)
Q Consensus 502 PvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~ 574 (1065)
|+|++|.++.++++.+++++|||++|+||++|+++||.+|++||+++|. ..++++++||+||.+|++++...
T Consensus 217 Pvil~G~g~~~~~a~~~l~~lae~l~~PV~tt~~gkg~~~~~hpl~~G~~g~~~~~~~~~~~~~aDlvL~lG~~l~~~~- 295 (565)
T PRK06154 217 PVIYAGQGVLYAQATPELKELAELLEIPVMTTLNGKSAFPEDHPLALGSGGRARPATVAHFLREADVLFGIGCSLTRSY- 295 (565)
T ss_pred CEEEECCCccccChHHHHHHHHHHhCCCEEECCCcccCCCCCCccccCCCCCCCcHHHHHHHHhCCEEEEECCCCcccc-
Confidence 9999999999888899999999999999999999999999999999872 34577899999999999998642
Q ss_pred cCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccc
Q psy14416 575 FGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLP 654 (1065)
Q Consensus 575 ~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 654 (1065)
.++ .++++.++||||.|+..+++++..++.|.+|+..+|++|.+.+..+... ......+|.+.+...++.+++...+
T Consensus 296 ~~~--~~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (565)
T PRK06154 296 YGL--PMPEGKTIIHSTLDDADLNKDYPIDHGLVGDAALVLKQMIEELRRRVGP-DRGRAQQVAAEIEAVRAAWLAKWMP 372 (565)
T ss_pred cCc--cCCCCCeEEEEECCHHHhccccCCCeeEEcCHHHHHHHHHHHhhhcccc-cccchHHHHHHHHHHHHHhHHhhhh
Confidence 222 2556789999999999999999999999999999999999987632100 0011346766655444333222111
Q ss_pred hhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCC-CcEEEEECCCC
Q psy14416 655 VILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLP-VILVIVNNNGI 733 (1065)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP-~d~ilv~d~G~ 733 (1065)
.. . ....|+ + +..+++ .|++.+| +|.+++.|.|+
T Consensus 373 ~~------------------~--------~~~~~l-----~---p~~~~~-----------~l~~~l~~~d~iv~~D~G~ 407 (565)
T PRK06154 373 KL------------------T--------SDSTPI-----N---PYRVVW-----------ELQHAVDIKTVIITHDAGS 407 (565)
T ss_pred hc------------------c--------CCCCCc-----C---HHHHHH-----------HHHHhcCCCCEEEEECCcc
Confidence 10 0 112356 7 778888 9999997 58999999998
Q ss_pred cCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccc
Q psy14416 734 YGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASI 813 (1065)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 813 (1065)
+..|..+++.. ..| +.++.
T Consensus 408 ~~~~~~~~~~~-----------------------------------------------~~p-------~~~~~------- 426 (565)
T PRK06154 408 PRDQLSPFYVA-----------------------------------------------SRP-------GSYLG------- 426 (565)
T ss_pred cHHHHHHhCCC-----------------------------------------------CCC-------CeEEc-------
Confidence 77765433321 001 01111
Q ss_pred ccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheecccccccccc
Q psy14416 814 VESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPV 893 (1065)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~ 893 (1065)
+|-+|+| |+++|+++ ||+++. |+
T Consensus 427 -------------------~~~~gsm----------------------------G~glpaai--Ga~la~--------p~ 449 (565)
T PRK06154 427 -------------------WGKTTQL----------------------------GYGLGLAM--GAKLAR--------PD 449 (565)
T ss_pred -------------------cCCCccc----------------------------ccHHHHHH--HHHHhC--------CC
Confidence 1224444 99999999 999998 99
Q ss_pred EEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccC
Q psy14416 894 ILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG 973 (1065)
Q Consensus 894 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~ 973 (1065)
++|| +++|||+| +|+.+||+|+ +|+++|+++||+||++ |+
T Consensus 450 r~Vv---------------------------------~i~GDG~f-~m~~~EL~Ta-----~r~~lpi~~vV~NN~~-yg 489 (565)
T PRK06154 450 ALVI---------------------------------NLWGDAAF-GMTGMDFETA-----VRERIPILTILLNNFS-MG 489 (565)
T ss_pred CcEE---------------------------------EEEcchHH-hccHHHHHHH-----HHhCCCeEEEEEECCc-cc
Confidence 9999 99999999 9999999999 9999999999999987 55
Q ss_pred CCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHh--cCCCCEEEEEEeCCCCCC
Q psy14416 974 GFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQ--TTTRPSLINILINPSADR 1051 (1065)
Q Consensus 974 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~--~~~~~~li~~~~~~~~~~ 1051 (1065)
.+.... .. . +. .......++||.++|++||+++++|++.+||+++|+++++ ..++|+||||.++++...
T Consensus 490 ~~~~~~-~~-~--~~-----~~~~~~~~~df~~lA~a~G~~g~~V~~~~el~~al~~a~~~~~~~~p~lIev~v~~~~~~ 560 (565)
T PRK06154 490 GYDKVM-PV-S--TT-----KYRATDISGDYAAIARALGGYGERVEDPEMLVPALLRALRKVKEGTPALLEVITSEETAL 560 (565)
T ss_pred eeehhh-hh-h--cC-----cccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhhccCCCeEEEEEEeChHHhc
Confidence 443321 10 0 10 1111112479999999999999999999999999999996 238899999999887654
No 44
>PRK07064 hypothetical protein; Provisional
Probab=100.00 E-value=1.6e-73 Score=692.38 Aligned_cols=517 Identities=19% Similarity=0.252 Sum_probs=416.0
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
+++++++|++.|+++||+++||+||+++.++++++.+ ++|++|.++||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 2 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~ 81 (544)
T PRK07064 2 KVTVGELIAAFLEQCGVKTAFGVISIHNMPILDAIGRRGKIRFVPARGEAGAVNMADAHARVSGGLGVALTSTGTGAGNA 81 (544)
T ss_pred CccHHHHHHHHHHHcCCCEEEeCCCCcchHHHHHHhccCCccEEeeccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHH
Confidence 3689999999999999999999999999999999965 479999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCC--CCc-cChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEE
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGG--FQE-CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYL 421 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga--~Q~-idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L 421 (1065)
++||++|+.+++|||+|+|+.+..+.+++. +|+ +||.++|+++|||++++++++++++.+++|++.|+++++|||||
T Consensus 82 ~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l 161 (544)
T PRK07064 82 AGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAVSKAAFRVRSAETALATIREAVRVALTAPTGPVSV 161 (544)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhhcceEEEeCCHHHHHHHHHHHHHHhccCCCCcEEE
Confidence 999999999999999999999988777664 455 69999999999999999999999999999999999999999999
Q ss_pred ecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCC
Q psy14416 422 DFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKA 501 (1065)
Q Consensus 422 ~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~Akr 501 (1065)
+||.|++.++++.+... . ........++++.+++++++|.+|||
T Consensus 162 ~iP~dv~~~~~~~~~~~---~---------------------------------~~~~~~~~~~~~~i~~~~~~l~~Akr 205 (544)
T PRK07064 162 EIPIDIQAAEIELPDDL---A---------------------------------PVHVAVPEPDAAAVAELAERLAAARR 205 (544)
T ss_pred EeCHhHhhccccccccc---c---------------------------------cccCCCCCCCHHHHHHHHHHHHhCCC
Confidence 99999988776432100 0 00112234678899999999999999
Q ss_pred cEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-----HHHhhhcCCCEEEEeCCccccccccC
Q psy14416 502 PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-----ARTHALQNADLVLLLGARLNWILHFG 576 (1065)
Q Consensus 502 PvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-----~~~~al~~aDlVI~iG~~~~~~~~~g 576 (1065)
|+|++|.++. ++.++|.+|+| +++||++|+++||.+|++||+++|. ....++++|||||.+|+++++..+..
T Consensus 206 Pvi~~G~g~~--~a~~~l~~lae-~~~pv~~t~~~kg~~~~~hp~~~G~~~~~~~~~~~~~~aDlvl~iG~~~~~~~~~~ 282 (544)
T PRK07064 206 PLLWLGGGAR--HAGAEVKRLVD-LGFGVVTSTQGRGVVPEDHPASLGAFNNSAAVEALYKTCDLLLVVGSRLRGNETLK 282 (544)
T ss_pred CEEEECCChH--hHHHHHHHHHH-cCCCEEEccCccccCCCCChhhcccCCCCHHHHHHHHhCCEEEEecCCCCcccccc
Confidence 9999999886 55688999999 9999999999999999999999983 45677889999999999998876655
Q ss_pred CCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchh
Q psy14416 577 RAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVI 656 (1065)
Q Consensus 577 ~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 656 (1065)
|. +..+.++||||.|+..+++.++.+..+.+|++++|++|.+.++... .....|.+.+.....+..+...
T Consensus 283 ~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~--- 352 (544)
T PRK07064 283 YS--LALPRPLIRVDADAAADGRGYPNDLFVHGDAARVLARLADRLEGRL-----SVDPAFAADLRAAREAAVADLR--- 352 (544)
T ss_pred cc--cCCCCceEEEeCCHHHhCCcCCCCceEecCHHHHHHHHHHhhhhcc-----ccchHHHHHHHHHHHhhhhhcc---
Confidence 53 2234589999999999999999999999999999999998775210 1234677666554433222110
Q ss_pred hhhhccCCccCCCCccccccccccCccccccceEEeecccccc-cccccccccccccchhhhhhcCCCcEEEEECCCCc-
Q psy14416 657 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGI-YGGFDETTYASIVESGEVTTVLPVILVIVNNNGIY- 734 (1065)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~-~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~- 734 (1065)
.++ . + ..+++ .|.+.+|++++++.|.|..
T Consensus 353 ------------------------------~~~-----~---~~~~~~~-----------~l~~~l~~~~ii~~d~~~~~ 383 (544)
T PRK07064 353 ------------------------------KGL-----G---PYAKLVD-----------ALRAALPRDGNWVRDVTISN 383 (544)
T ss_pred ------------------------------ccc-----C---cHHHHHH-----------HHHHhCCCCCEEEeCCccch
Confidence 012 2 2 24677 9999999999999998642
Q ss_pred CcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccc
Q psy14416 735 GGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIV 814 (1065)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 814 (1065)
..|...++.. ..| +. +
T Consensus 384 ~~~~~~~~~~-----------------------------------------------~~p----~~---~---------- 399 (544)
T PRK07064 384 STWGNRLLPI-----------------------------------------------FEP----RA---N---------- 399 (544)
T ss_pred HHHHHHhcCc-----------------------------------------------cCC----Cc---e----------
Confidence 2232211110 000 00 0
Q ss_pred cccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccE
Q psy14416 815 ESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVI 894 (1065)
Q Consensus 815 ~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~ 894 (1065)
+ ..+| | +||+++++++ ||+++. |++
T Consensus 400 --------------~-~~~~--g----------------------------~mG~~lpaAi--Ga~lA~--------p~~ 424 (544)
T PRK07064 400 --------------V-HALG--G----------------------------GIGQGLAMAI--GAALAG--------PGR 424 (544)
T ss_pred --------------e-ccCC--C----------------------------ccccccchhh--hhhhhC--------cCC
Confidence 0 0011 3 3499999998 999998 999
Q ss_pred EEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCC
Q psy14416 895 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 974 (1065)
Q Consensus 895 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~ 974 (1065)
+|+ +++|||+| +|+.++|+|+ +|+++|+++||+||+| |+.
T Consensus 425 ~vv---------------------------------~i~GDGsf-~m~~~eL~Ta-----~~~~lpv~ivV~NN~~-yg~ 464 (544)
T PRK07064 425 KTV---------------------------------GLVGDGGL-MLNLGELATA-----VQENANMVIVLMNDGG-YGV 464 (544)
T ss_pred cEE---------------------------------EEEcchHh-hhhHHHHHHH-----HHhCCCeEEEEEeCCh-hHH
Confidence 999 99999999 9999999999 9999999999999988 443
Q ss_pred CchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCC
Q psy14416 975 FDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINP 1047 (1065)
Q Consensus 975 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~ 1047 (1065)
+.... .....+ ...+...+++||.++|++||+++++|+|.+||+++++++++. ++|+||||.+++
T Consensus 465 ~~~~~--~~~~~~-----~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~-~~p~lIeV~~~~ 529 (544)
T PRK07064 465 IRNIQ--DAQYGG-----RRYYVELHTPDFALLAASLGLPHWRVTSADDFEAVLREALAK-EGPVLVEVDMLS 529 (544)
T ss_pred HHHHH--HHhcCC-----ccccccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHcC-CCCEEEEEEccc
Confidence 32211 111011 122344567999999999999999999999999999999986 899999999974
No 45
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=1.9e-72 Score=684.58 Aligned_cols=538 Identities=21% Similarity=0.273 Sum_probs=416.4
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC------CceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE------GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGP 339 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~------~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGp 339 (1065)
.++++++|++.|+++||+++||+||..+.++++++.+. +|++|.||||++|+|||+||+|+||||+||++|+||
T Consensus 6 ~~~~a~~l~~~L~~~GV~~iFgvpG~~~~~l~dal~~~~~~g~~~i~~V~~rhE~~A~~~Adgyar~tgk~gv~~~t~GP 85 (569)
T PRK08327 6 MYTAAELFLELLKELGVDYIFINSGTDYPPIIEAKARARAAGRPLPEFVICPHEIVAISMAHGYALVTGKPQAVMVHVDV 85 (569)
T ss_pred cccHHHHHHHHHHHCCCCEEEEcCCCCcHHHHHHHHhhhhcCCCCCcEEecCCHHHHHHHHHHHHHhhCCCeEEEEecCH
Confidence 46899999999999999999999999999999999642 399999999999999999999999999999999999
Q ss_pred cccccccccccccccCcceEeecCCCccCCCCC--------CCCCc-cChhhhhcccccEEeeCCChhhHHHHHHHHHHH
Q psy14416 340 GLLHTFGGMANAQINCWPMLVIGGSCAQDHEGI--------GGFQE-CPQVELARPYCKYSARPPNIHLIGQHVEKAVRL 410 (1065)
Q Consensus 340 G~~N~~~av~eA~~~~vPLlvItg~~p~~~~g~--------ga~Q~-idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~ 410 (1065)
|++|+++||++|+.+++|||+|+|+.+....++ +.+|+ +||..+|+++|||+.++.+++++.+.+++|++.
T Consensus 86 G~~N~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~~~~vtk~~~~v~~~~~~~~~l~~A~~~ 165 (569)
T PRK08327 86 GTANALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGLVREYVKWDYEIRRGDQIGEVVARAIQI 165 (569)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHHHHhhhhhhhcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999998776543 46899 699999999999999999999999999999999
Q ss_pred hhcCCCCEEEEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHH
Q psy14416 411 STFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELK 490 (1065)
Q Consensus 411 A~~~~~GPV~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~ 490 (1065)
|.++|||||||+||.|++.++++.....+ + . ........++++.++
T Consensus 166 a~~~~~GPV~i~iP~Dv~~~~~~~~~~~~-~-~--------------------------------~~~~~~~~~~~~~~~ 211 (569)
T PRK08327 166 AMSEPKGPVYLTLPREVLAEEVPEVKADA-G-R--------------------------------QMAPAPPAPDPEDIA 211 (569)
T ss_pred HhcCCCCCEEEECcHHHHhhhccccccCc-c-c--------------------------------cCCCCCCCCCHHHHH
Confidence 99999999999999999988875321110 0 0 011123356788999
Q ss_pred HHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHHHHhhhcCCCEEEEeCCccc
Q psy14416 491 QASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLN 570 (1065)
Q Consensus 491 ~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~ 570 (1065)
+++++|++||||+|++|.++.++++.+++.+|||++++||++|+++||.+|++||+++|...+++++++||||.+|+++.
T Consensus 212 ~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~~~~hp~~~G~~~~~~~~~aDlvl~lG~~l~ 291 (569)
T PRK08327 212 RAAEMLAAAERPVIITWRAGRTAEGFASLRRLAEELAIPVVEYAGEVVNYPSDHPLHLGPDPRADLAEADLVLVVDSDVP 291 (569)
T ss_pred HHHHHHHhCCCCEEEEecccCCcccHHHHHHHHHHhCCCEEecCCCceeCCCCCccccccccchhhhhCCEEEEeCCCCC
Confidence 99999999999999999999988889999999999999999999999999999999999877788899999999999987
Q ss_pred cccccCCCccccCCCeEEEecCChhhcc---cccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHh
Q psy14416 571 WILHFGRAPRFKSNVKIIQVDLNAEELH---NSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQT 647 (1065)
Q Consensus 571 ~~~~~g~~~~~~~~~~iI~Vd~d~~~~~---~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~ 647 (1065)
+.....+ +.++.++||||.|+..++ ++++.++.|++|+..+|++|.+.++....... .....|.+.|.+...+
T Consensus 292 ~~~~~~~---~~~~~~vi~Id~d~~~~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~-~~~~~~~~~~~~~~~~ 367 (569)
T PRK08327 292 WIPKKIR---PDADARVIQIDVDPLKSRIPLWGFPCDLCIQADTSTALDQLEERLKSLASAER-RRARRRRAAVRELRIR 367 (569)
T ss_pred Ccccccc---CCCCCeEEEEeCChhhhcccccCcceeEEEecCHHHHHHHHHHHHhhcccchh-hhhhhhHHHHHHHHHH
Confidence 6433221 345678999999998775 47788999999999999999998863110000 0000112222222222
Q ss_pred hhhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEE
Q psy14416 648 NRQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVI 727 (1065)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~il 727 (1065)
.++...... . . .....++ + +..+++ .|.+.+|++.++
T Consensus 368 ~~~~~~~~~---------~--------~-------~~~~~~i-----~---~~~~~~-----------~l~~~l~~~~~v 404 (569)
T PRK08327 368 QEAAKRAEI---------E--------R-------LKDRGPI-----T---PAYLSY-----------CLGEVADEYDAI 404 (569)
T ss_pred hhhhhhhhh---------h--------c-------cCCCCCc-----C---HHHHHH-----------HHHHhcCccceE
Confidence 111110000 0 0 0012345 6 778889 999999998888
Q ss_pred EECCCCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCc
Q psy14416 728 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 807 (1065)
Q Consensus 728 v~d~G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 (1065)
+.+.+ |..+++.. ..| ..++
T Consensus 405 v~~~~----~~~~~~~~-----------------------------------------------~~~-------~~~~-- 424 (569)
T PRK08327 405 VTEYP----FVPRQARL-----------------------------------------------NKP-------GSYF-- 424 (569)
T ss_pred EeccH----HHHHhcCc-----------------------------------------------cCC-------CCee--
Confidence 86542 22211110 001 0011
Q ss_pred ccccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheecccc
Q psy14416 808 TTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEV 887 (1065)
Q Consensus 808 g~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ 887 (1065)
++|.+|+| |+++|+++ |++++.
T Consensus 425 ------------------------~~~~~gsm----------------------------G~~lp~ai--Ga~la~---- 446 (569)
T PRK08327 425 ------------------------GDGSAGGL----------------------------GWALGAAL--GAKLAT---- 446 (569)
T ss_pred ------------------------eCCCCCCC----------------------------CcchHHHH--HHhhcC----
Confidence 12334444 99999998 999998
Q ss_pred ccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhh--HHHhhccCccccCCCEEEEE
Q psy14416 888 TTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETT--YASIVESGEVTTVLPVILVI 965 (1065)
Q Consensus 888 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v 965 (1065)
|+++|+ +++|||+| +|+.++ ++|+ +|+++|+++||
T Consensus 447 ----p~~~vv---------------------------------~i~GDG~f-~~~~~e~~l~ta-----~~~~l~~~ivv 483 (569)
T PRK08327 447 ----PDRLVI---------------------------------ATVGDGSF-IFGVPEAAHWVA-----ERYGLPVLVVV 483 (569)
T ss_pred ----CCCeEE---------------------------------EEecCcce-eecCcHHHHHHH-----HHhCCCEEEEE
Confidence 999999 99999999 888765 8999 99999999999
Q ss_pred EcCCcccCCCchhhHhHHhhcCCc--ccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhc---CCCCEE
Q psy14416 966 VNNNGIYGGFDEATYASIVESGEV--TTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQT---TTRPSL 1040 (1065)
Q Consensus 966 ~nn~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~---~~~~~l 1040 (1065)
+||+| |+.+... ...++..+.. ....+.....+.+||.++|++||+.+++|++.+||+++++++++. .++|+|
T Consensus 484 ~NN~~-yg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~~~~gp~l 561 (569)
T PRK08327 484 FNNGG-WLAVKEA-VLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAFGGYGERVEDPEELKGALRRALAAVRKGRRSAV 561 (569)
T ss_pred EeCcc-cccchhH-HhhhCcccccccccccccccCCCCCCHHHHHHhCCCCceEeCCHHHHHHHHHHHHHHHhcCCCcEE
Confidence 99977 5544432 1222211100 011112233367999999999999999999999999999999864 267999
Q ss_pred EEEEeCC
Q psy14416 1041 INILINP 1047 (1065)
Q Consensus 1041 i~~~~~~ 1047 (1065)
|||.++|
T Consensus 562 iev~v~~ 568 (569)
T PRK08327 562 LDVIVDR 568 (569)
T ss_pred EEEEccC
Confidence 9999976
No 46
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=100.00 E-value=4.2e-71 Score=668.50 Aligned_cols=513 Identities=18% Similarity=0.231 Sum_probs=413.9
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
..++++++|++.|+++||+++||+||+++.+|++++.+ +|++|.++||++|+|||+||+|+||+|+||++|+|||++|+
T Consensus 10 ~~~~~a~~l~~~L~~~GV~~vFgiPG~~~~~l~dal~~-~i~~i~~~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~N~ 88 (530)
T PRK07092 10 AMTTVRDATIDLLRRFGITTVFGNPGSTELPFLRDFPD-DFRYVLGLQEAVVVGMADGYAQATGNAAFVNLHSAAGVGNA 88 (530)
T ss_pred ccCcHHHHHHHHHHHcCCCEEEeCCCCcchHHHHHHhh-cCCEEEEccHHHHHHHHHHHHHHhCCceEEEeccCchHHHH
Confidence 35789999999999999999999999999999999964 69999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCCCC-ccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQ-ECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q-~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
++||++|+.+++|||+|+|+.+.+..+++.+| .+||..+|+++|||+.++.+++++++.+++|++.|+++|+|||||+|
T Consensus 89 ~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~i 168 (530)
T PRK07092 89 MGNLFTAFKNHTPLVITAGQQARSILPFEPFLAAVQAAELPKPYVKWSIEPARAEDVPAAIARAYHIAMQPPRGPVFVSI 168 (530)
T ss_pred HHHHHHHhhcCCCEEEEecCCcccccCccchhcccCHHHhhcccccceeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEc
Confidence 99999999999999999999999998888874 48999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++.++.+. .. + ........++++.+++++++|.+||||+
T Consensus 169 P~d~~~~~~~~--~~--~----------------------------------~~~~~~~~~~~~~~~~~~~~L~~AkrPv 210 (530)
T PRK07092 169 PYDDWDQPAEP--LP--A----------------------------------RTVSSAVRPDPAALARLGDALDAARRPA 210 (530)
T ss_pred cHHHhhCcccc--cc--c----------------------------------CCCCCCCCCCHHHHHHHHHHHHcCCCcE
Confidence 99998776542 10 0 0011123467888999999999999999
Q ss_pred EEEccCCCchhHHHHHHHHHhhcCCCEEecCC-CCCCCCCCCcccccH------HHHhhhcCCCEEEEeCCccccccccC
Q psy14416 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPM-GKGVVPDAHPNCVSA------ARTHALQNADLVLLLGARLNWILHFG 576 (1065)
Q Consensus 504 IlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~-gkg~v~~~hpl~lg~------~~~~al~~aDlVI~iG~~~~~~~~~g 576 (1065)
|++|.++.++++.++|++|+|++|+||+++++ +||.+|++||+++|. ...+++++||+||.+|+++.+....+
T Consensus 211 Il~G~g~~~~~a~~~l~~lae~lg~pV~~t~~~~kg~~~~~hp~~~G~~g~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~ 290 (530)
T PRK07092 211 LVVGPAVDRAGAWDDAVRLAERHRAPVWVAPMSGRCSFPEDHPLFAGFLPASREKISALLDGHDLVLVIGAPVFTYHVEG 290 (530)
T ss_pred EEECCCcchhhhHHHHHHHHHHHCCcEEEecCCCcCcCCCCCccccCcCCccHHHHHHHHhhCCEEEEECCcccccccCC
Confidence 99999998888889999999999999999987 799999999999883 34567889999999999765444444
Q ss_pred CCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchh
Q psy14416 577 RAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVI 656 (1065)
Q Consensus 577 ~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 656 (1065)
+...++++.++||||.|+..++. +..+..+.+|+..+|++|.+.++.. .+..|.. + +.....
T Consensus 291 ~~~~~~~~~~~i~id~d~~~~~~-~~~~~~i~~d~~~~l~~L~~~l~~~-------~~~~~~~--~-------~~~~~~- 352 (530)
T PRK07092 291 PGPHLPEGAELVQLTDDPGEAAW-APMGDAIVGDIRLALRDLLALLPPS-------ARPAPPA--R-------PMPPPA- 352 (530)
T ss_pred ccccCCCCCeEEEEeCChHHhcC-CCCCCcccCCHHHHHHHHHHhhccc-------cccchhh--h-------hccccc-
Confidence 44445556789999999988766 4578999999999999999987521 0111110 0 000000
Q ss_pred hhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCc
Q psy14416 657 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 736 (1065)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~ 736 (1065)
. ....|+ + +..+++ .|.+.+|++.+++.|.|++..
T Consensus 353 ------------------~--------~~~~~l-----~---~~~~~~-----------~l~~~l~~~~ivv~d~g~~~~ 387 (530)
T PRK07092 353 ------------------P--------APGEPL-----S---VAFVLQ-----------TLAALRPADAIVVEEAPSTRP 387 (530)
T ss_pred ------------------c--------CCCCCc-----C---HHHHHH-----------HHHHhCCCCeEEEeCCCccHH
Confidence 0 012245 6 777888 999999999999999998777
Q ss_pred ccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccc
Q psy14416 737 FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVES 816 (1065)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 816 (1065)
|...++.. ..| ..++
T Consensus 388 ~~~~~~~~-----------------------------------------------~~~-------~~~~----------- 402 (530)
T PRK07092 388 AMQEHLPM-----------------------------------------------RRQ-------GSFY----------- 402 (530)
T ss_pred HHHHhcCc-----------------------------------------------CCC-------CceE-----------
Confidence 65432211 000 0000
Q ss_pred cceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEE
Q psy14416 817 GEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 896 (1065)
Q Consensus 817 ~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v 896 (1065)
+ + .+ +++|+++++++ |++++. |+++|
T Consensus 403 --------------~-~-~~----------------------------g~mG~~lp~ai--Ga~la~--------p~~~v 428 (530)
T PRK07092 403 --------------T-M-AS----------------------------GGLGYGLPAAV--GVALAQ--------PGRRV 428 (530)
T ss_pred --------------c-c-CC----------------------------CcccchHHHHH--HHHHhC--------CCCeE
Confidence 0 0 01 33488888887 999988 89999
Q ss_pred EEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCc
Q psy14416 897 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 976 (1065)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~ 976 (1065)
+ +++|||+| +|+.++|+++ +++++|+++||+||+| |+.+.
T Consensus 429 v---------------------------------~i~GDG~f-~~~~~eL~ta-----~~~~lp~~~vv~NN~~-~~~~~ 468 (530)
T PRK07092 429 I---------------------------------GLIGDGSA-MYSIQALWSA-----AQLKLPVTFVILNNGR-YGALR 468 (530)
T ss_pred E---------------------------------EEEeCchH-hhhHHHHHHH-----HHhCCCcEEEEEeChH-HHHHH
Confidence 9 99999999 9999999999 9999999999999987 33222
Q ss_pred hhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeC
Q psy14416 977 EATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILIN 1046 (1065)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~ 1046 (1065)
.. ......+ .......+++||.++|++||+++++|++.+||+++++++++. ++|+||||.+|
T Consensus 469 ~~--~~~~~~~-----~~~~~~~~~~d~~~~a~~~G~~~~~v~~~~~l~~al~~a~~~-~~p~liev~~d 530 (530)
T PRK07092 469 WF--APVFGVR-----DVPGLDLPGLDFVALARGYGCEAVRVSDAAELADALARALAA-DGPVLVEVEVA 530 (530)
T ss_pred HH--HHhhCCC-----CCCCCCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhC-CCCEEEEEEcC
Confidence 11 1110001 122333478999999999999999999999999999999976 89999999985
No 47
>PRK07586 hypothetical protein; Validated
Probab=100.00 E-value=7.4e-71 Score=664.54 Aligned_cols=501 Identities=17% Similarity=0.177 Sum_probs=393.1
Q ss_pred ccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccccc
Q psy14416 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 345 (1065)
Q Consensus 267 ~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~ 345 (1065)
|+++++|++.|+++||+++||+||+.+.++++++.+ ++|++|.+|||++|+|||+||||+||+|+||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFG~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~ 80 (514)
T PRK07586 1 MNGAESLVRTLVDGGVDVCFANPGTSEMHFVAALDRVPGMRCVLGLFEGVATGAADGYARMAGKPAATLLHLGPGLANGL 80 (514)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCCchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHH
Confidence 478999999999999999999999999999999976 5899999999999999999999999999999999999999999
Q ss_pred cccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecCh
Q psy14416 346 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPA 425 (1065)
Q Consensus 346 ~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~ 425 (1065)
+||++|+.+++|||+|+|+.+..+.+.+.+|++||.++|+++|||+.++++++++++.+++|++.|+++|||||||+||.
T Consensus 81 ~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 160 (514)
T PRK07586 81 ANLHNARRARTPIVNIVGDHATYHRKYDAPLTSDIEALARPVSGWVRRSESAADVAADAAAAVAAARGAPGQVATLILPA 160 (514)
T ss_pred HHHHHHHhcCCCEEEEecCCchhccCCCcccccchhhhhccccceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q psy14416 426 NLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505 (1065)
Q Consensus 426 Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvIl 505 (1065)
|++.++++.+... ........++++.+++++++|++||||+|+
T Consensus 161 Dv~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~v~~~~~~L~~A~rPvi~ 203 (514)
T PRK07586 161 DVAWSEGGPPAPP-------------------------------------PPAPAPAAVDPAAVEAAAAALRSGEPTVLL 203 (514)
T ss_pred chhcccccccccc-------------------------------------CCCCCCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 9987765422110 000122346788999999999999999999
Q ss_pred EccCCCchhHHHHHHHHHhhcCCCEEecC------CCCCCCCCCCcccccHHHHhhhcCCCEEEEeCCccccccccCCC-
Q psy14416 506 IGKGAAYSQAETELLSFVNSFNLPFLPTP------MGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWILHFGRA- 578 (1065)
Q Consensus 506 vG~g~~~~~a~~~L~~LAe~lg~PV~tt~------~gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~~~~~g~~- 578 (1065)
+|.++.++++.+++++|||++|+||+++. ++||.++++|+.+.+.....++++|||||.+|+++... ...+.
T Consensus 204 ~G~g~~~~~a~~~l~~lae~l~~pV~t~~~~~~~~~gkg~~~~~~~~~~~~~~~~~~~~aDlvl~vG~~~~~~-~~~~~~ 282 (514)
T PRK07586 204 LGGRALRERGLAAAARIAAATGARLLAETFPARMERGAGRPAVERLPYFAEQALAQLAGVRHLVLVGAKAPVA-FFAYPG 282 (514)
T ss_pred eCCcccchhHHHHHHHHHHHHCCCEEecccccccccCCCCCCcccccchHHHHHHHHhcCCEEEEECCCCccc-ccccCC
Confidence 99999988889999999999999999865 59999999998887877777899999999999986321 11110
Q ss_pred --cc-ccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccch
Q psy14416 579 --PR-FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPV 655 (1065)
Q Consensus 579 --~~-~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 655 (1065)
.. +..+.++++++. ..+|++.+|++|.+.++... . .. .+.. . ....
T Consensus 283 ~~~~~~~~~~~~~~~~~--------------~~~d~~~~l~~L~~~l~~~~------~-~~---~~~~----~---~~~~ 331 (514)
T PRK07586 283 KPSRLVPEGCEVHTLAG--------------PGEDAAAALEALADALGAKP------A-AP---PLAA----P---ARPP 331 (514)
T ss_pred CccccCCCCceEEEECC--------------CcccHHHHHHHHHHhhcccc------c-ch---hhhh----c---cccC
Confidence 01 111223332221 13799999999988775210 0 00 0000 0 0000
Q ss_pred hhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcC
Q psy14416 656 ILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG 735 (1065)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~ 735 (1065)
....|+ + +..+++ .|.+.||++++++.|+|++.
T Consensus 332 ----------------------------~~~~~i-----~---~~~~~~-----------~l~~~l~~~~ivv~d~g~~~ 364 (514)
T PRK07586 332 ----------------------------LPTGAL-----T---PEAIAQ-----------VIAALLPENAIVVDESITSG 364 (514)
T ss_pred ----------------------------CCCCCc-----C---HHHHHH-----------HHHHhCCCCeEEEeCCCcCH
Confidence 012245 6 677888 99999999999999998866
Q ss_pred cccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccc
Q psy14416 736 GFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVE 815 (1065)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 815 (1065)
.|...++.. ..| +.
T Consensus 365 ~~~~~~~~~-----------------------------------------------~~~-------~~------------ 378 (514)
T PRK07586 365 RGFFPATAG-----------------------------------------------AAP-------HD------------ 378 (514)
T ss_pred HHHHHhccc-----------------------------------------------cCC-------CC------------
Confidence 664422211 000 00
Q ss_pred ccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEE
Q psy14416 816 SGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVIL 895 (1065)
Q Consensus 816 ~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 895 (1065)
.+.+.| |+| |+++|+++ ||+++. |+++
T Consensus 379 -------------~~~~~~--g~m----------------------------G~~lpaai--Ga~lA~--------p~r~ 405 (514)
T PRK07586 379 -------------WLTLTG--GAI----------------------------GQGLPLAT--GAAVAC--------PDRK 405 (514)
T ss_pred -------------EEccCC--ccc----------------------------ccHHHHHH--HHHHhC--------CCCe
Confidence 001111 344 99999988 999998 9999
Q ss_pred EEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCC
Q psy14416 896 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 975 (1065)
Q Consensus 896 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~ 975 (1065)
|+ +++|||+| +|+.+||+|+ +|+++|+++||+||+| |+.+
T Consensus 406 Vv---------------------------------~i~GDGsf-~m~~~EL~Ta-----~~~~lpv~ivV~NN~~-y~~~ 445 (514)
T PRK07586 406 VL---------------------------------ALQGDGSA-MYTIQALWTQ-----ARENLDVTTVIFANRA-YAIL 445 (514)
T ss_pred EE---------------------------------EEEechHH-HhHHHHHHHH-----HHcCCCCEEEEEeCch-hHHH
Confidence 99 99999999 9999999999 9999999999999988 4433
Q ss_pred chhhHhHHhhcCCcccC-CCCCC-CCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEe
Q psy14416 976 DEATYASIVESGEVTTV-SPPTS-LGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILI 1045 (1065)
Q Consensus 976 ~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~ 1045 (1065)
... + ........... ..... ..+++||.++|++||+++++|++.+||+++|+++++. ++|.||||.+
T Consensus 446 ~~~-~-~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~~~~el~~al~~a~~~-~~p~liev~~ 514 (514)
T PRK07586 446 RGE-L-ARVGAGNPGPRALDMLDLDDPDLDWVALAEGMGVPARRVTTAEEFADALAAALAE-PGPHLIEAVV 514 (514)
T ss_pred HHH-H-HHhcCCCCCccccccccCCCCCCCHHHHHHHCCCcEEEeCCHHHHHHHHHHHHcC-CCCEEEEEEC
Confidence 221 1 11100000000 01112 2357999999999999999999999999999999986 8999999975
No 48
>PLN02573 pyruvate decarboxylase
Probab=100.00 E-value=1.6e-71 Score=676.14 Aligned_cols=532 Identities=18% Similarity=0.202 Sum_probs=413.4
Q ss_pred cccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccc
Q psy14416 263 YDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGL 341 (1065)
Q Consensus 263 ~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~ 341 (1065)
+++.++++++|++.|+++||+||||+||+.+.++++++.+ .+|++|.||||++|+|||+||+|+|| |+||++|+|||+
T Consensus 12 ~~~~~~~a~~l~~~L~~~Gv~~vFGvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyaR~tg-~gv~~~t~GpG~ 90 (578)
T PLN02573 12 SSSDATLGRHLARRLVEIGVTDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARARG-VGACVVTFTVGG 90 (578)
T ss_pred ccccccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHhC-CCeEEEecCccH
Confidence 4567899999999999999999999999999999999965 57999999999999999999999999 999999999999
Q ss_pred cccccccccccccCcceEeecCCCccCCCCCCCCCc--------cChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhc
Q psy14416 342 LHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE--------CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTF 413 (1065)
Q Consensus 342 ~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~--------idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~ 413 (1065)
+|+++++++|+.+++|||+|+|+.+...++++.+|+ .++.++|+++|||+.++.+++++++.+++|++.|++
T Consensus 91 ~n~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~A~~ 170 (578)
T PLN02573 91 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVINNLEDAHELIDTAISTALK 170 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHhhceEEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999988777766432 234689999999999999999999999999999998
Q ss_pred CCCCEEEEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHH
Q psy14416 414 GKPGVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQAS 493 (1065)
Q Consensus 414 ~~~GPV~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~a 493 (1065)
+| |||||+||.|++.++.+.....+.+.. + ........++++.+++++
T Consensus 171 ~~-gPV~l~iP~Dv~~~~~~~~~~~~~~~~------~-------------------------~~~~~~~~~~~~~~~~a~ 218 (578)
T PLN02573 171 ES-KPVYISVSCNLAAIPHPTFSREPVPFF------L-------------------------TPRLSNKMSLEAAVEAAA 218 (578)
T ss_pred cC-CCEEEEeehhhhcCccccccCCCCCcc------c-------------------------ccCCCChHHHHHHHHHHH
Confidence 75 899999999998766432110000000 0 000111224567899999
Q ss_pred HHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH--------HHHhhhcCCCEEEEe
Q psy14416 494 RLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------ARTHALQNADLVLLL 565 (1065)
Q Consensus 494 e~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~--------~~~~al~~aDlVI~i 565 (1065)
++|++||||+||+|.++.++++.+++++|||++|+||++|+++||++|++||+++|. ...+++++||+||.+
T Consensus 219 ~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~~PV~tt~~gkg~~pe~hpl~~G~~~G~~~~~~~~~~~~~aDlvl~l 298 (578)
T PLN02573 219 EFLNKAVKPVLVGGPKLRVAKACKAFVELADASGYPVAVMPSAKGLVPEHHPHFIGTYWGAVSTPFCAEIVESADAYLFA 298 (578)
T ss_pred HHHHhCCCCEEEEChhhcccchHHHHHHHHHHhCCCEEECcccCCCCCCcCCCceEEeeCCCCCHHHHHHHHhCCEEEEE
Confidence 999999999999999998888899999999999999999999999999999999873 345678899999999
Q ss_pred CCccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHH
Q psy14416 566 GARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKC 645 (1065)
Q Consensus 566 G~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~ 645 (1065)
|+++++..+.+|.. +.+++++||||.|+..+++.+ +..+. |+..+|++|.+.++.. ...|. .|+..
T Consensus 299 G~~l~~~~~~~~~~-~~~~~~~I~id~d~~~i~~~~--~~~~~-~~~~~l~~L~~~l~~~--------~~~~~-~~~~~- 364 (578)
T PLN02573 299 GPIFNDYSSVGYSL-LLKKEKAIIVQPDRVTIGNGP--AFGCV-LMKDFLEALAKRVKKN--------TTAYE-NYKRI- 364 (578)
T ss_pred CCccCCcccccccc-cCCCCcEEEEeCCEEEECCcc--eECCc-CHHHHHHHHHHHhhcc--------ccccc-ccccc-
Confidence 99998766554432 345678999999999988754 34444 7999999998887521 11221 11100
Q ss_pred HhhhhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcE
Q psy14416 646 QTNRQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVIL 725 (1065)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ 725 (1065)
.... ... . .. ....|+ + +..+++ .|++.+|+|+
T Consensus 365 --~~~~-~~~----------~--------~~-------~~~~~i-----~---~~~~~~-----------~l~~~l~~d~ 397 (578)
T PLN02573 365 --FVPE-GEP----------L--------KS-------EPGEPL-----R---VNVLFK-----------HIQKMLSGDT 397 (578)
T ss_pred --ccCc-ccC----------C--------CC-------CCCCcc-----C---HHHHHH-----------HHHHhcCCCC
Confidence 0000 000 0 00 112346 6 777888 9999999999
Q ss_pred EEEECCCCcCcccc-cchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccc
Q psy14416 726 VIVNNNGIYGGFDE-TTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 804 (1065)
Q Consensus 726 ilv~d~G~~~~~~~-~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1065)
+++.|+|++ |.. +++. .|. + ..
T Consensus 398 iiv~D~G~~--~~~~~~~~-----------~~~------------------------------------~-------~~- 420 (578)
T PLN02573 398 AVIAETGDS--WFNCQKLK-----------LPE------------------------------------G-------CG- 420 (578)
T ss_pred EEEEecccc--hhhHHhcc-----------CCC------------------------------------C-------Ce-
Confidence 999999874 211 0000 000 0 00
Q ss_pred cCcccccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheec
Q psy14416 805 FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVES 884 (1065)
Q Consensus 805 ~~~g~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~ 884 (1065)
+-+++.+|+| |+++|+++ ||+++.
T Consensus 421 -------------------------~~~~~~~gsm----------------------------G~glpaai--Ga~lA~- 444 (578)
T PLN02573 421 -------------------------YEFQMQYGSI----------------------------GWSVGATL--GYAQAA- 444 (578)
T ss_pred -------------------------EEeecchhhh----------------------------hhhhhHHH--HHHHhC-
Confidence 0002224444 99999999 999999
Q ss_pred cccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEE
Q psy14416 885 GEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 964 (1065)
Q Consensus 885 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 964 (1065)
|+++|| +++|||+| +|+.+||+|+ +|+++|+++|
T Consensus 445 -------p~r~vv---------------------------------~i~GDG~f-~m~~~EL~Ta-----~r~~lpvv~v 478 (578)
T PLN02573 445 -------PDKRVI---------------------------------ACIGDGSF-QVTAQDVSTM-----IRCGQKSIIF 478 (578)
T ss_pred -------CCCceE---------------------------------EEEeccHH-HhHHHHHHHH-----HHcCCCCEEE
Confidence 999999 99999999 9999999999 9999999999
Q ss_pred EEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcC-----CCeEeeCCHHHHHHHHHHHHh-cCCCC
Q psy14416 965 IVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFG-----HDGYLCTTVPQIKQAMKKCLQ-TTTRP 1038 (1065)
Q Consensus 965 v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~l~~~~~~~~~-~~~~~ 1038 (1065)
|+||++ |+..... + + ..+...+++||.++|++|| +++.+|++.+||+++|+++++ ..++|
T Consensus 479 V~NN~~-yg~~~~~-~------~------~~~~~~~~~d~~~lA~a~G~~~g~~~~~~V~~~~eL~~al~~a~~~~~~~p 544 (578)
T PLN02573 479 LINNGG-YTIEVEI-H------D------GPYNVIKNWNYTGLVDAIHNGEGKCWTAKVRTEEELIEAIATATGEKKDCL 544 (578)
T ss_pred EEeCCc-eeEEEee-c------c------cCccccCCCCHHHHHHHhcCcCCceeEEEecCHHHHHHHHHHHHhhCCCCc
Confidence 999987 4432211 0 0 0123346799999999996 889999999999999999985 24899
Q ss_pred EEEEEEeCCCCCCCcchhhhhHhh
Q psy14416 1039 SLINILINPSADRKPQNFSWLTNL 1062 (1065)
Q Consensus 1039 ~li~~~~~~~~~~~~~~~~~~~~~ 1062 (1065)
.||||.+++++...+ ...|...+
T Consensus 545 ~lieV~v~~~~~~~~-~~~~~~~~ 567 (578)
T PLN02573 545 CFIEVIVHKDDTSKE-LLEWGSRV 567 (578)
T ss_pred EEEEEEcCcCCCCHH-HHHHHHHH
Confidence 999999998876655 56666554
No 49
>PRK12474 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-70 Score=662.46 Aligned_cols=503 Identities=17% Similarity=0.166 Sum_probs=392.9
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
.++++++|++.|+++||+++||+||+.+.++++++.+ .+|++|.+|||++|+|||+||+|+||+|+||++|+|||++|+
T Consensus 4 ~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgYaR~tg~~gv~~~t~GpG~~N~ 83 (518)
T PRK12474 4 TMNGADSVVDTLLNCGVEVCFANPGTSEMHFVAALDRVPRMRPVLCLFEGVVTGAADGYGRIAGKPAVTLLHLGPGLANG 83 (518)
T ss_pred CccHHHHHHHHHHHCCCCEEEECCCcchHHHHHHhhccCCceEEEecchHHHHHHHHHHHHHhCCCEEEEEccchhHhHh
Confidence 5689999999999999999999999999999999965 589999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecC
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP 424 (1065)
++||++|+.+++|||+|+|+.+..+.+.+.+|+.||..+++++|||+.++.+++++++.|+||++.|.++|||||||+||
T Consensus 84 ~~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP 163 (518)
T PRK12474 84 LANLHNARRAASPIVNIVGDHAVEHLQYDAPLTSDIDGFARPVSRWVHRSASAGAVDSDVARAVQAAQSAPGGIATLIMP 163 (518)
T ss_pred HHHHHHHhhcCCCEEEEeccCchhhcCCCCccccCHHHhhhcccceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEE
Q psy14416 425 ANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLV 504 (1065)
Q Consensus 425 ~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvI 504 (1065)
.|++.++++.+... .. . .....++.+.+++++++|++||||+|
T Consensus 164 ~Dv~~~~~~~~~~~---~~--------------------------------~--~~~~~~~~~~i~~~~~~L~~A~rPvi 206 (518)
T PRK12474 164 ADVAWNEAAYAAQP---LR--------------------------------G--IGPAPVAAETVERIAALLRNGKKSAL 206 (518)
T ss_pred hhhhcccccCCcCC---CC--------------------------------C--CCCCCCCHHHHHHHHHHHHcCCCcEE
Confidence 99987665321000 00 0 01123678899999999999999999
Q ss_pred EEccCCCchhHHHHHHHHHhhcCCCEEec------CCCCCCCCC-CCcccccHHHHhhhcCCCEEEEeCCccccc--ccc
Q psy14416 505 IIGKGAAYSQAETELLSFVNSFNLPFLPT------PMGKGVVPD-AHPNCVSAARTHALQNADLVLLLGARLNWI--LHF 575 (1065)
Q Consensus 505 lvG~g~~~~~a~~~L~~LAe~lg~PV~tt------~~gkg~v~~-~hpl~lg~~~~~al~~aDlVI~iG~~~~~~--~~~ 575 (1065)
++|.++.++++.+++++|+|++|+||+++ +++||.+|+ +||++ ......++++||+||.+|+++++. ...
T Consensus 207 l~G~g~~~~~a~~~l~~lae~~g~PV~~t~~~~~~~~gkg~~~~~~~~~~-~~~~~~~~~~aDlvl~lG~~~~~~~~~~~ 285 (518)
T PRK12474 207 LLRGSALRGAPLEAAGRIQAKTGVRLYCDTFAPRIERGAGRVPIERIPYF-HEQITAFLKDVEQLVLVGAKPPVSFFAYP 285 (518)
T ss_pred EECCccchhhHHHHHHHHHHHHCCCEEEecCcccccCCCCCCCCcccccc-hHHHHHHHhhCCEEEEECCCCCccccccC
Confidence 99999988888999999999999999975 468999995 55665 444556889999999999996431 111
Q ss_pred C-CCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccc
Q psy14416 576 G-RAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLP 654 (1065)
Q Consensus 576 g-~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 654 (1065)
. +...+.+..++++++.. .+|+..+|++|.+.++.. ..|... ......
T Consensus 286 ~~~~~~~~~~~~i~~~~~~--------------~~d~~~~l~~L~~~l~~~---------~~~~~~-------~~~~~~- 334 (518)
T PRK12474 286 GKPSWGAPPGCEIVYLAQP--------------DEDLAQALQDLADAVDAP---------AEPAAR-------TPLALP- 334 (518)
T ss_pred CCccccCCCCCEEEEECCC--------------CcCHHHHHHHHHHhcccc---------cccccc-------cccccc-
Confidence 1 11112334667776632 169999999998876410 001000 000000
Q ss_pred hhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCc
Q psy14416 655 VILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIY 734 (1065)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~ 734 (1065)
. ....|+ + +..+++ .|.+.+|+|++++.|+|++
T Consensus 335 ~----------------------------~~~~~i-----~---~~~~~~-----------~l~~~l~~d~iv~~d~g~~ 367 (518)
T PRK12474 335 A----------------------------LPKGAL-----N---SLGVAQ-----------LIAHRTPDQAIYADEALTS 367 (518)
T ss_pred C----------------------------CCCCCc-----C---HHHHHH-----------HHHHHCCCCeEEEECCCcC
Confidence 0 012245 6 667888 9999999999999999987
Q ss_pred CcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccc
Q psy14416 735 GGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIV 814 (1065)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 814 (1065)
..|..+++.. ..| +.+
T Consensus 368 ~~~~~~~~~~-----------------------------------------------~~p-------~~~---------- 383 (518)
T PRK12474 368 GLFFDMSYDR-----------------------------------------------ARP-------HTH---------- 383 (518)
T ss_pred HHHHHHhhcc-----------------------------------------------cCC-------CCE----------
Confidence 7764433221 001 000
Q ss_pred cccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccE
Q psy14416 815 ESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVI 894 (1065)
Q Consensus 815 ~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~ 894 (1065)
+. ++ +++||+++|+++ ||+++. |++
T Consensus 384 ---------------~~-~~-----------------------------~gsmG~glpaAi--Ga~lA~--------p~r 408 (518)
T PRK12474 384 ---------------LP-LT-----------------------------GGSIGQGLPLAA--GAAVAA--------PDR 408 (518)
T ss_pred ---------------Ec-cC-----------------------------CCccCccHHHHH--HHHHHC--------CCC
Confidence 00 11 134499999999 999998 999
Q ss_pred EEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCC
Q psy14416 895 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 974 (1065)
Q Consensus 895 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~ 974 (1065)
+|| +++|||+| +|+.|||+|+ +|+++|+++||+||+| |+.
T Consensus 409 ~vv---------------------------------~i~GDG~f-~m~~qEL~Ta-----~r~~lpv~iiV~NN~~-y~~ 448 (518)
T PRK12474 409 KVV---------------------------------CPQGDGGA-AYTMQALWTM-----ARENLDVTVVIFANRS-YAI 448 (518)
T ss_pred cEE---------------------------------EEEcCchh-cchHHHHHHH-----HHHCCCcEEEEEcCCc-chH
Confidence 999 99999999 9999999999 9999999999999988 554
Q ss_pred CchhhHhHHhhcCCcccCCCCCC-CCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEe
Q psy14416 975 FDEATYASIVESGEVTTVSPPTS-LGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILI 1045 (1065)
Q Consensus 975 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~ 1045 (1065)
.... .................. ..+++||.++|++||+++++|++.+||+++|+++++. ++|.||||.+
T Consensus 449 i~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv~~~~eL~~al~~a~~~-~~p~liev~~ 518 (518)
T PRK12474 449 LNGE-LQRVGAQGAGRNALSMLDLHNPELNWMKIAEGLGVEASRATTAEEFSAQYAAAMAQ-RGPRLIEAMI 518 (518)
T ss_pred HHHH-HHhhcCCCCCccccccccCCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHcC-CCCEEEEEEC
Confidence 3321 111000000000001111 2356999999999999999999999999999999986 8999999975
No 50
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=100.00 E-value=5.8e-71 Score=665.99 Aligned_cols=509 Identities=17% Similarity=0.156 Sum_probs=400.6
Q ss_pred cHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCC-ceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccccc
Q psy14416 268 SANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 346 (1065)
Q Consensus 268 ~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~-i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~ 346 (1065)
+.+++|++.|+++||+++||+||+.+.++++++.+.+ |++|.++||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus 1 ~~~~~l~~~L~~~Gv~~vFGvpG~~~~~l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~ 80 (535)
T TIGR03394 1 KLAEALLRALKDRGAQEMFGIPGDFALPFFKVIEETGILPLHTLSHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNMVN 80 (535)
T ss_pred CHHHHHHHHHHHcCCCEEEECCCcccHHHHHHHhhCCCCeEEcccCcchHHHHHhHHHHhhCCceEEEEecchHHHhhhh
Confidence 4689999999999999999999999999999997766 999999999999999999999999999999999999999999
Q ss_pred ccccccccCcceEeecCCCccCCCCCCCCCc-----cC-hhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEE
Q psy14416 347 GMANAQINCWPMLVIGGSCAQDHEGIGGFQE-----CP-QVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSY 420 (1065)
Q Consensus 347 av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~-----id-Q~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~ 420 (1065)
|+++|+.+++|||+|+|+.++...+++.+|+ +| |.++|+++|||+.++.+++++++.+++|++.|++ +|||||
T Consensus 81 gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtk~~~~v~~~~~~~~~~~~A~~~a~~-~~gPv~ 159 (535)
T TIGR03394 81 AIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKEVTCDQAVLDDPATAPAEIARVLGSARE-LSRPVY 159 (535)
T ss_pred HHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhhheEEEEEeCChHHhHHHHHHHHHHHHH-CCCCEE
Confidence 9999999999999999999998888877543 64 8899999999999999999999999999999997 669999
Q ss_pred EecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCC
Q psy14416 421 LDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAK 500 (1065)
Q Consensus 421 L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~Ak 500 (1065)
|+||.|++.++++..... ...+....+..+.+++++++|++||
T Consensus 160 i~iP~Dv~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~v~~~~~~l~~Ak 202 (535)
T TIGR03394 160 LEIPRDMVNAEVEPVPDD-------------------------------------PAWPVDRDALDACADEVLARMRSAT 202 (535)
T ss_pred EEechhhccCccCCCCCC-------------------------------------CCCCCChHHHHHHHHHHHHHHHhCC
Confidence 999999988776421100 0001111223567899999999999
Q ss_pred CcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH--------HHHhhhcCCCEEEEeCCccccc
Q psy14416 501 APLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLGARLNWI 572 (1065)
Q Consensus 501 rPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~--------~~~~al~~aDlVI~iG~~~~~~ 572 (1065)
||+|++|.++.++++.+++++|||++|+||++|++|||.+|++||+++|. ..++++++|||||.+|+++++.
T Consensus 203 rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tT~~gkg~~pe~hpl~~G~~~G~~~~~~~~~~l~~aDliL~iG~~l~~~ 282 (535)
T TIGR03394 203 SPVMMVCVEVRRYGLEAKVAELAQRLGVPVVTTFMGRGLLADAPTPPLGTYLGVAGDAELSRLVEESDGLLLLGVILSDT 282 (535)
T ss_pred CCEEEEChhhcccCcHHHHHHHHHHhCCCEEEccccCcCCCCCCccccccccCCCCCHHHHHHHHhCCEEEEECCccccc
Confidence 99999999998888899999999999999999999999999999999882 3567889999999999999875
Q ss_pred cccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcc
Q psy14416 573 LHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVK 652 (1065)
Q Consensus 573 ~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~ 652 (1065)
...... .+.++.++||||.|+..+++++..++.+ .|+...|++|.+.+... .+..|...+. ...
T Consensus 283 ~~~~~~-~~~~~~~~I~id~~~~~~~~~~~~~~~i-~d~~~~L~~l~~~~~~~-------~~~~~~~~~~-------~~~ 346 (535)
T TIGR03394 283 NFAVSQ-RKIDLRRTIHAFDRAVTLGYHVYADIPL-AGLVDALLALLCGLPPS-------DRTTRGKGPH-------AYP 346 (535)
T ss_pred cccccc-ccCCCCcEEEEeCCEEEECCeeECCccH-HHHHHHHHHhhhccccc-------cccccccccc-------ccc
Confidence 432221 1234578999999999999888888888 78888888877654310 0000111000 000
Q ss_pred cchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCc--EEEEEC
Q psy14416 653 LPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVI--LVIVNN 730 (1065)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d--~ilv~d 730 (1065)
... . .+..++ + +..+++ .|.+.||++ .+++.|
T Consensus 347 ~~~-------------------~--------~~~~~i-----~---p~~~~~-----------~l~~~l~~~~~~ii~~D 380 (535)
T TIGR03394 347 RGL-------------------Q--------ADAEPI-----A---PMDIAR-----------AVNDRFARHGQMPLAAD 380 (535)
T ss_pred ccc-------------------C--------CCCCCc-----C---HHHHHH-----------HHHHHhCCCCCEEEEEc
Confidence 000 0 012245 5 667888 999999875 578999
Q ss_pred CCCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccc
Q psy14416 731 NGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTY 810 (1065)
Q Consensus 731 ~G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 810 (1065)
+|++.-|... + . + ..
T Consensus 381 ~G~~~~~~~~-~--------------------------------------~------------~-------~~------- 395 (535)
T TIGR03394 381 IGDCLFTAMD-M--------------------------------------D------------D-------AG------- 395 (535)
T ss_pred cCHHHHHHHh-c--------------------------------------C------------C-------Cc-------
Confidence 8863222100 0 0 0 00
Q ss_pred cccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccc
Q psy14416 811 ASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTV 890 (1065)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~ 890 (1065)
+-++|-+|+| |+++|+++ ||+++.
T Consensus 396 -------------------~~~~~~~g~m----------------------------G~glpaai--Ga~lA~------- 419 (535)
T TIGR03394 396 -------------------LMAPGYYAGM----------------------------GFGVPAGI--GAQCTS------- 419 (535)
T ss_pred -------------------EECcCccchh----------------------------hhHHHHHH--HHHhCC-------
Confidence 0112335555 99999999 999986
Q ss_pred cccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCc
Q psy14416 891 LPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNG 970 (1065)
Q Consensus 891 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g 970 (1065)
|. +++ +++|||+| +|+.|||+|+ +|+++|+++||+||+|
T Consensus 420 -~~-r~v---------------------------------~i~GDG~f-~m~~~EL~Ta-----~r~~lpv~~vV~NN~~ 458 (535)
T TIGR03394 420 -GK-RIL---------------------------------TLVGDGAF-QMTGWELGNC-----RRLGIDPIVILFNNAS 458 (535)
T ss_pred -CC-CeE---------------------------------EEEeChHH-HhHHHHHHHH-----HHcCCCcEEEEEECCc
Confidence 53 447 78999999 9999999999 9999999999999988
Q ss_pred ccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q psy14416 971 IYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSAD 1050 (1065)
Q Consensus 971 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 1050 (1065)
|+...... . . . .+...+++||.++|++||+++.+|++.+||+++++++++..++|.||||.++|.+-
T Consensus 459 -y~~~~~~~--~----~-----~-~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~~p~lIev~i~~~~~ 525 (535)
T TIGR03394 459 -WEMLRVFQ--P----E-----S-AFNDLDDWRFADMAAGMGGDGVRVRTRAELAAALDKAFATRGRFQLIEAMLPRGVL 525 (535)
T ss_pred -cceeehhc--c----C-----C-CcccCCCCCHHHHHHHcCCCceEeCCHHHHHHHHHHHHhcCCCeEEEEEECCcccC
Confidence 44332211 0 0 0 11223469999999999999999999999999999999764568999999987776
Q ss_pred C
Q psy14416 1051 R 1051 (1065)
Q Consensus 1051 ~ 1051 (1065)
.
T Consensus 526 ~ 526 (535)
T TIGR03394 526 S 526 (535)
T ss_pred C
Confidence 5
No 51
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=100.00 E-value=8.6e-71 Score=671.63 Aligned_cols=538 Identities=15% Similarity=0.132 Sum_probs=405.3
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
+++.+++|++.|+++||+++||+||+++.++++++.+ .+|++|.++||++|+|||+||+|+||+|+||++|+|||++|+
T Consensus 8 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~~l~~~~~i~~v~~~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~~N~ 87 (568)
T PRK07449 8 NTLWAAVILEELTRLGVRHVVIAPGSRSTPLTLAAAEHPRLRLHTHFDERSAGFLALGLAKASKRPVAVIVTSGTAVANL 87 (568)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCcEEEeecCcccHHHHHHHHHHhhCCCEEEEECCccHHHhh
Confidence 4789999999999999999999999999999999965 479999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCCh--hhHHHHHHHHHH---HhhcCCCCEE
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNI--HLIGQHVEKAVR---LSTFGKPGVS 419 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~--~~i~~~i~~A~~---~A~~~~~GPV 419 (1065)
++||++|+.+++|||+|+|+++...++++.+|++||.++|+++|+++.+..+. +.+...++++++ .|.++++|||
T Consensus 88 l~~i~~A~~~~~Pvl~IsG~~~~~~~~~~~~q~~d~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~~~~GPV 167 (568)
T PRK07449 88 YPAVIEAGLTGVPLIVLTADRPPELRDCGANQAIDQLGLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQTLQAGPV 167 (568)
T ss_pred hHHHHHHhhcCCcEEEEECCCCHHHhcCCCCceecHhhHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCE
Confidence 99999999999999999999999999999999999999999999887776544 233443444444 4777899999
Q ss_pred EEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhC
Q psy14416 420 YLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEA 499 (1065)
Q Consensus 420 ~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~A 499 (1065)
||+||.|++..+....... .+........|+ ........+++..+++++++|++
T Consensus 168 ~i~iP~Dv~~~~~~~~~~~-~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~l~~- 221 (568)
T PRK07449 168 HINCPFREPLYPDDDDDTG-SPWLAPLGDWWQ------------------------DDWLRQTVQPEVTSQRDWDIWRQ- 221 (568)
T ss_pred EEeCCCCCCCCCCCccccc-cccccccccccc------------------------ccccccccCccccchhhhhhhcc-
Confidence 9999999865443211000 000000000000 00000123456678999999998
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHH--------HHhhhcCCCEEEEeCCcccc
Q psy14416 500 KAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAA--------RTHALQNADLVLLLGARLNW 571 (1065)
Q Consensus 500 krPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~--------~~~al~~aDlVI~iG~~~~~ 571 (1065)
|||+|++|.++.+. .++|.+|+|++|+||++++++|+.+|++||+++|.. ..+++++||+||.+|+++.+
T Consensus 222 krPvii~G~g~~~~--~~~l~~lae~~g~PV~tt~~~~~~~~~~hp~~~G~~g~~~~~~~~~~~l~~aD~vl~vG~~l~~ 299 (568)
T PRK07449 222 KRGVVIAGRLSAEE--GQAIAALAQLLGWPLLADPLSPRNYAPLHPQPIPCYDLWLRNPKAAEELLQPDIVIQFGSPPTS 299 (568)
T ss_pred CCeEEEECCCChHH--HHHHHHHHHHCCCeEEEecCCCCCCCCCCccccchHHHHhcCchhhhhcCCCCEEEEeCCCCCc
Confidence 99999999999743 389999999999999999999999999999998832 34567899999999999876
Q ss_pred ccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhc
Q psy14416 572 ILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQV 651 (1065)
Q Consensus 572 ~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~ 651 (1065)
..+..|... .+.++||||.|+..+++.+..++.+.+|++.+|++ ... .....|.++++...+++...
T Consensus 300 ~~~~~~~~~--~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~-~~~----------~~~~~~~~~~~~~~~~~~~~ 366 (568)
T PRK07449 300 KRLLQWLAD--CEPEYWVVDPGPGRLDPAHHATRRLTASVATWLEA-HPA----------EKRKPWLQEWQALNEKAREA 366 (568)
T ss_pred hhHHHHHhc--CCCCEEEECCCCCcCCCCCCceEEEEEcHHHHHHh-ccc----------ccchHHHHHHHHHHHHHHHH
Confidence 555445322 23489999999999999999999999999999998 221 11346777666544433322
Q ss_pred ccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECC
Q psy14416 652 KLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNN 731 (1065)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~ 731 (1065)
.++. ....++ + +..+++ .|.+.+|++.+|+.|+
T Consensus 367 ~~~~----------------------------~~~~~i-----~---~~~~~~-----------~l~~~l~~~~iv~~~~ 399 (568)
T PRK07449 367 VREQ----------------------------LAEDTF-----T---EAKVAA-----------ALADLLPEGGQLFVGN 399 (568)
T ss_pred HHHH----------------------------hccCCc-----c---HHHHHH-----------HHHHhCCCCCeEEEEC
Confidence 2111 011235 6 677888 9999999999999999
Q ss_pred CCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccc
Q psy14416 732 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYA 811 (1065)
Q Consensus 732 G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 811 (1065)
|++..|..+++.. .. |.
T Consensus 400 g~~~~~~~~~~~~-----~~----~~------------------------------------------------------ 416 (568)
T PRK07449 400 SLPVRDVDAFGQL-----PD----GY------------------------------------------------------ 416 (568)
T ss_pred cHHHHHHHHccCc-----CC----Cc------------------------------------------------------
Confidence 8755553322211 00 00
Q ss_pred ccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheecccccccc
Q psy14416 812 SIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVL 891 (1065)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~ 891 (1065)
.++.|.| +|+ +|+++|+++ ||+++
T Consensus 417 ----------------~~~~~~g-~~~----------------------------~G~~lpaai--Gaala--------- 440 (568)
T PRK07449 417 ----------------PVYSNRG-ASG----------------------------IDGLLSTAA--GVARA--------- 440 (568)
T ss_pred ----------------eEEecCC-ccc----------------------------hhhHHHHHH--HHHhc---------
Confidence 0111111 122 388888877 88886
Q ss_pred ccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCc-
Q psy14416 892 PVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNG- 970 (1065)
Q Consensus 892 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g- 970 (1065)
|+++|+ +++|||+| +|+.++++|+ +|+++|+++||+||+|
T Consensus 441 ~~~~vv---------------------------------~i~GDGsf-~~~~~eL~Ta-----~r~~l~i~ivVlNN~g~ 481 (568)
T PRK07449 441 SAKPTV---------------------------------ALIGDLSF-LHDLNGLLLL-----KQVPAPLTIVVVNNNGG 481 (568)
T ss_pred CCCCEE---------------------------------EEechHHh-hcCcHHHHhh-----cccCCCeEEEEEECCCC
Confidence 467899 99999999 9999999999 9999999999999998
Q ss_pred -ccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCC
Q psy14416 971 -IYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSA 1049 (1065)
Q Consensus 971 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~ 1049 (1065)
+|+.+...+ + +.. ....+...+++||.++|++||+++++|+|.+||+++|+++++. ++|+||||.+++++
T Consensus 482 ~~~~~~~~~~--~----~~~--~~~~~~~~~~~df~~lA~a~G~~~~~V~~~~eL~~al~~a~~~-~~p~lIev~id~~~ 552 (568)
T PRK07449 482 GIFSLLPQPE--E----EPV--FERFFGTPHGVDFAHAAAMYGLEYHRPETWAELEEALADALPT-PGLTVIEVKTNRSQ 552 (568)
T ss_pred ccccCCCCCC--C----cch--hhHhhcCCCCCCHHHHHHHcCCCccCCCCHHHHHHHHHHHhcC-CCCEEEEEeCChhh
Confidence 333322110 0 000 0112233467999999999999999999999999999999976 89999999999877
Q ss_pred CCCcchhhhhH
Q psy14416 1050 DRKPQNFSWLT 1060 (1065)
Q Consensus 1050 ~~~~~~~~~~~ 1060 (1065)
..+ .+.|..
T Consensus 553 ~~~--~~~~~~ 561 (568)
T PRK07449 553 GAQ--LLQALL 561 (568)
T ss_pred hHH--HHHHHH
Confidence 643 445543
No 52
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=100.00 E-value=1.3e-69 Score=656.38 Aligned_cols=507 Identities=17% Similarity=0.187 Sum_probs=399.5
Q ss_pred cHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccccc
Q psy14416 268 SANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 346 (1065)
Q Consensus 268 ~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~ 346 (1065)
+++++|++.|+++||+++||+||+.+.++++++.+ ++|++|.+|||++|+|||+||+|+|| ++||++|+|||++|+++
T Consensus 2 t~~~~l~~~L~~~Gv~~vFG~pG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mAdgyar~tg-~gv~~~t~GPG~~n~~~ 80 (539)
T TIGR03393 2 TVGDYLLDRLTDIGIDHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNAAYAADGYARCKG-AAALLTTFGVGELSAIN 80 (539)
T ss_pred cHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhCCCCcEeccCCcccHHHHhhhhhhhcC-ceEEEEecCccHHHHhh
Confidence 68999999999999999999999999999999965 58999999999999999999999999 79999999999999999
Q ss_pred ccccccccCcceEeecCCCccCC----------CCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCC
Q psy14416 347 GMANAQINCWPMLVIGGSCAQDH----------EGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKP 416 (1065)
Q Consensus 347 av~eA~~~~vPLlvItg~~p~~~----------~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~ 416 (1065)
||++|+.+++|||+|+|+.+... .+.+.+|++ .++++++|||+..+ +++++++.+++|++.|... +
T Consensus 81 gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~q~~--~~~~~~itk~~~~~-~~~~~~~~i~~a~~~A~~~-~ 156 (539)
T TIGR03393 81 GIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHF--YRMAAEVTVAQAVL-TEQNATAEIDRVITTALRE-R 156 (539)
T ss_pred HHHHHhhccCCEEEEECCCCcchhhcCceeeeecCCCchHHH--HHHhhceEEEEEEe-ChhhhHHHHHHHHHHHHhc-C
Confidence 99999999999999999988742 244456653 68999999999866 7889999999999999875 4
Q ss_pred CEEEEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHH
Q psy14416 417 GVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLI 496 (1065)
Q Consensus 417 GPV~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L 496 (1065)
|||||+||.|++.++++.+... .. . ..+......+++.+++++++|
T Consensus 157 gPv~l~iP~Dv~~~~~~~~~~~---~~--~-----------------------------~~~~~~~~~~~~~i~~a~~~L 202 (539)
T TIGR03393 157 RPGYLMLPVDVAAKAVTPPVNP---LV--T-----------------------------HKPAHADSALRAFRDAAENKL 202 (539)
T ss_pred CCEEEEecccccCCccCCCCcc---cC--c-----------------------------CCCCCChHHHHHHHHHHHHHH
Confidence 8999999999988876532100 00 0 000000011134589999999
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH--------HHHhhhcCCCEEEEeCCc
Q psy14416 497 LEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLGAR 568 (1065)
Q Consensus 497 ~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~--------~~~~al~~aDlVI~iG~~ 568 (1065)
++||||+|++|.++.++++.+++.+|+|++++||++|+++||.+|++||+++|. ..++++++||+||.+|++
T Consensus 203 ~~AkrPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hpl~lG~~~g~~~~~~~~~~~~~aDlvl~lG~~ 282 (539)
T TIGR03393 203 AMAKRVSLLADFLALRHGLKHALQKWVKEVPMPHATLLMGKGILDEQQAGFYGTYSGSASTGAVKEAIEGADAVICVGVR 282 (539)
T ss_pred HhCCCCEEEeChhhcccChHHHHHHHHHHhCCCEEECcccCccccCcCCCeEEEEeCCCCCHHHHHHHhhCCEEEEECCc
Confidence 999999999999998888899999999999999999999999999999999872 456788999999999999
Q ss_pred cccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhh
Q psy14416 569 LNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 648 (1065)
Q Consensus 569 ~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~ 648 (1065)
+++..+.+|...+.+ .++|+||+|+..+++++..++.+ +|+..+|++|.+.+.. .|... . ..
T Consensus 283 l~~~~~~~~~~~~~~-~~~I~id~~~~~~~~~~~~~~~i-~D~~~~l~~l~~~l~~-----------~~~~~-~----~~ 344 (539)
T TIGR03393 283 FTDTITAGFTHQLTP-EQTIDVQPHAARVGNVWFTGIPM-NDAIETLVELCEHAGL-----------MWSSS-G----AI 344 (539)
T ss_pred ccccccceeeccCCc-ccEEEEcCCeEEECceEeCCcCH-HHHHHHHHHHhhhccc-----------ccccc-c----cc
Confidence 987665555333433 57899999999998888888887 9999999999876641 12210 0 00
Q ss_pred hhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEE
Q psy14416 649 RQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 728 (1065)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv 728 (1065)
+... .. .+..|+ + +..+++ .|.+.+|++.+++
T Consensus 345 ----~~~~------------------~~-------~~~~~l-----~---~~~~~~-----------~l~~~l~~~~iiv 376 (539)
T TIGR03393 345 ----PFPQ------------------PD-------ESRSAL-----S---QENFWQ-----------TLQTFLRPGDIIL 376 (539)
T ss_pred ----CcCC------------------CC-------CCCCcc-----C---HHHHHH-----------HHHHhcCCCCEEE
Confidence 0000 00 011245 6 667888 9999999999999
Q ss_pred ECCCCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcc
Q psy14416 729 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDET 808 (1065)
Q Consensus 729 ~d~G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 808 (1065)
.|.|++. |..+++.. + .+ +.++
T Consensus 377 ~d~G~~~-~~~~~~~~-----------~------------------------------------~~-------~~~~--- 398 (539)
T TIGR03393 377 ADQGTSA-FGAADLRL-----------P------------------------------------AD-------VNFI--- 398 (539)
T ss_pred EccCchh-hhhhhccC-----------C------------------------------------CC-------CeEE---
Confidence 9998764 43322110 0 00 0000
Q ss_pred cccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccc
Q psy14416 809 TYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVT 888 (1065)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~ 888 (1065)
+++-+|+| |+++++++ ||+++.
T Consensus 399 -----------------------~~~~~g~m----------------------------G~glpaai--Ga~la~----- 420 (539)
T TIGR03393 399 -----------------------VQPLWGSI----------------------------GYTLPAAF--GAQTAC----- 420 (539)
T ss_pred -----------------------echhhhhh----------------------------hhHHHHHH--HHHhcC-----
Confidence 12224445 99999999 999998
Q ss_pred cccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcC
Q psy14416 889 TVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNN 968 (1065)
Q Consensus 889 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn 968 (1065)
|+++|| +++|||+| +|+.+||+|+ +|+++|+++||+||
T Consensus 421 ---p~~~vv---------------------------------~i~GDG~f-~m~~~EL~Ta-----~~~~lpi~~vV~NN 458 (539)
T TIGR03393 421 ---PNRRVI---------------------------------LLIGDGSA-QLTIQELGSM-----LRDKQHPIILVLNN 458 (539)
T ss_pred ---CCCCeE---------------------------------EEEcCcHH-HhHHHHHHHH-----HHcCCCCEEEEEeC
Confidence 999999 99999999 9999999999 99999999999999
Q ss_pred CcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCC----eEeeCCHHHHHHHHHHHHhcCCCCEEEEEE
Q psy14416 969 NGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHD----GYLCTTVPQIKQAMKKCLQTTTRPSLINIL 1044 (1065)
Q Consensus 969 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~~l~~~~~~~~~~~~~~~li~~~ 1044 (1065)
+| |+..... .. .+ ..+...+++||.++|++||++ +++|++.+||+++++++++. ++|+||||.
T Consensus 459 ~~-y~~i~~~-----~~-~~-----~~~~~~~~~df~~la~a~G~~~~~~~~~v~~~~el~~al~~a~~~-~~p~liev~ 525 (539)
T TIGR03393 459 EG-YTVERAI-----HG-AE-----QRYNDIALWNWTHLPQALSLDPQSECWRVSEAEQLADVLEKVAAH-ERLSLIEVV 525 (539)
T ss_pred Cc-eEEEEee-----cC-CC-----CCcCcCCCCCHHHHHHHcCCCCccceEEeccHHHHHHHHHHHhcc-CCeEEEEEE
Confidence 88 3322210 00 00 112233569999999999996 89999999999999999986 999999999
Q ss_pred eCCCCC
Q psy14416 1045 INPSAD 1050 (1065)
Q Consensus 1045 ~~~~~~ 1050 (1065)
+++++.
T Consensus 526 i~~~~~ 531 (539)
T TIGR03393 526 LPKADI 531 (539)
T ss_pred cCcccC
Confidence 987654
No 53
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=100.00 E-value=3.3e-68 Score=605.37 Aligned_cols=538 Identities=17% Similarity=0.167 Sum_probs=417.1
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
+..-+..+++.|.++||++++.|||||++||..++.++ .|++++..|||+|+|+|+|+||++++|++++||||++++|+
T Consensus 7 nt~~a~v~~eeL~r~GV~~vvicPGSRSTPLala~~~~~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA~ANl 86 (566)
T COG1165 7 NTLWARVFLEELARLGVRDVVICPGSRSTPLALAAAAHDAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTAVANL 86 (566)
T ss_pred hHHHHHHHHHHHHHcCCcEEEECCCCCCcHHHHHHHhcCCeEEEEecccchHHHHHHhhhhhcCCCEEEEEcCcchhhhc
Confidence 34567889999999999999999999999999998765 79999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhh-------HHHHHHHHHHHhhcCCCC
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHL-------IGQHVEKAVRLSTFGKPG 417 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~-------i~~~i~~A~~~A~~~~~G 417 (1065)
+|||+||..+++||||||+|||.|++++|++|+|||.+||+++++|+.++..|+. +.....++.+.|+...+|
T Consensus 87 ~PAViEA~~srvpLIVLTADRP~EL~~~GAnQaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~~~~~~~~~a~~~~~G 166 (566)
T COG1165 87 YPAVIEANLSRVPLIVLTADRPPELRGCGANQAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTIASAAAQQARTPHAG 166 (566)
T ss_pred cHHHHhhhhcCCceEEEeCCCCHHHhcCCCchhhhhhhhhcccchhhccCCCCCCCHHHHHHHHHHHHHHHHhccCCCCC
Confidence 9999999999999999999999999999999999999999999999999987763 556666777778788999
Q ss_pred EEEEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHH
Q psy14416 418 VSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLIL 497 (1065)
Q Consensus 418 PV~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~ 497 (1065)
|||||||++.+..+...+.....+ ..++..+| ++. ..+...... .+.+.. .+.+
T Consensus 167 pVHiN~PfrePL~p~~~~~~~~~~-~~~~~~~~------------~~~----------~~~~~~~~~-~~~~~~-~~~~- 220 (566)
T COG1165 167 PVHINVPFREPLVPDLEPEGAGTP-WGRPLGHW------------WFY----------TGPWTVDQG-PDLLSE-WFFW- 220 (566)
T ss_pred ceEecCCCCccCCCCCCccccccc-cccccCch------------hhc----------CCceeeecc-cccccc-hhhh-
Confidence 999999998877665544211001 00011111 000 000000110 111222 3333
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCC--CCCCCcccccH-HHHhhhcCCCEEEEeCCccccccc
Q psy14416 498 EAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGV--VPDAHPNCVSA-ARTHALQNADLVLLLGARLNWILH 574 (1065)
Q Consensus 498 ~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~--v~~~hpl~lg~-~~~~al~~aDlVI~iG~~~~~~~~ 574 (1065)
.+||++||+|.... ...+.+.++++.+|||+++++.+.-. ++.. ..++.. ...+-+ .+|+||+||.++.+|..
T Consensus 221 ~~~rgviv~G~~~~--~e~~~i~~~a~~lg~PilaDplS~lr~~i~~y-D~~L~~~~~~~~L-~~d~VI~fG~~~~SK~l 296 (566)
T COG1165 221 RQKRGVIVAGRMSA--QEGKGILALANTLGWPILADPLSPLRNYIPCY-DLWLANPKAAEKL-RPDIVIQFGSPPTSKRL 296 (566)
T ss_pred cccCceEEEecCch--hhhHHHHHHHHHhCCceecccccccCCCcccc-hhhhcCchhhhhc-CccEEEEeCCCcccHHH
Confidence 46899999998665 44566999999999999999987422 2222 233332 233333 55999999999999999
Q ss_pred cCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccc
Q psy14416 575 FGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLP 654 (1065)
Q Consensus 575 ~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 654 (1065)
.+|+..+. ..+.|.||+.+.+.|+.+..+..+.+++..+++.+..... .+.+|+++|....++.++.+.+
T Consensus 297 ~qwl~~~~-~~~~~vvd~~~~~~Dp~~~~~~~~~~~v~~~~~~~~~~~~---------~~~~Wl~~~~~~~~~~~~~v~~ 366 (566)
T COG1165 297 LQWLADTE-PIEYWVVDPGGGWLDPSHHATTRLSADVATWARSIHPAGR---------IRKPWLDEWLALNEKARQAVRD 366 (566)
T ss_pred HHHHhccC-CCcEEEEcCCCCcCCcccccceEEEeehhHhHHHhccccc---------cccHHHHHHHHHHHHHHHHHHH
Confidence 99987543 3678889999999999999999999999999976644322 1578999999999988888765
Q ss_pred hhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCc
Q psy14416 655 VILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIY 734 (1065)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~ 734 (1065)
.+ ... .+ + +..++. +|.+.||+++.++.+||+
T Consensus 367 ~~---------------------------~~~-~~-----~---e~~~a~-----------~l~~~lp~~~~LFvgNSm- 398 (566)
T COG1165 367 QL---------------------------AAE-AL-----T---EAHLAA-----------ALADLLPPQDQLFVGNSM- 398 (566)
T ss_pred Hh---------------------------ccc-Cc-----h---hhHHHH-----------HHHHhCCCCCeEEEecCc-
Confidence 52 111 34 5 778888 999999999999998844
Q ss_pred CcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccc
Q psy14416 735 GGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIV 814 (1065)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 814 (1065)
|+|+++ . +.. .+.|++.+.|||+
T Consensus 399 ---------------------pVRdvd-------------~---------------~~~---~~~~~~v~sNRGA----- 421 (566)
T COG1165 399 ---------------------PVRDVD-------------A---------------LGQ---LPAGYRVYSNRGA----- 421 (566)
T ss_pred ---------------------hhhhHH-------------H---------------hcc---CccCceeecCCCc-----
Confidence 555544 1 001 1255666777777
Q ss_pred cccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccE
Q psy14416 815 ESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVI 894 (1065)
Q Consensus 815 ~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~ 894 (1065)
|||||+. +||++++.. ..+
T Consensus 422 ------------------~GIDG~v------------------------------------STA~Gi~~a-------~~~ 440 (566)
T COG1165 422 ------------------SGIDGTV------------------------------------STALGIARA-------TQK 440 (566)
T ss_pred ------------------cccchhH------------------------------------HHHhhhhhh-------cCC
Confidence 9999999 344444432 245
Q ss_pred EEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCc--cc
Q psy14416 895 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNG--IY 972 (1065)
Q Consensus 895 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g--~~ 972 (1065)
+++ +++||+|| .+|.+.|+.. .+...|++|||+|||| ||
T Consensus 441 ptv---------------------------------~liGDLS~-lhD~NgLl~~-----k~~~~~ltIvv~NNnGGgIF 481 (566)
T COG1165 441 PTV---------------------------------ALIGDLSF-LHDLNGLLLL-----KKVPQPLTIVVVNNNGGGIF 481 (566)
T ss_pred ceE---------------------------------EEEechhh-hhccchHhhc-----CCCCCCeEEEEEeCCCceee
Confidence 677 99999999 8888888877 8889999999999998 99
Q ss_pred CCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 973 GGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 973 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
+.++++.. .+.++..|.++|++||+.+|+.||.+|.++.+++||+++++.+... .+.+||||++|++..++
T Consensus 482 ~~Lp~~~~--------~~~fe~~F~tPh~ldF~~la~~y~l~y~~~~s~~~l~~~~~~~~~~-~g~~viEvkt~r~~~~~ 552 (566)
T COG1165 482 SLLPQAQS--------EPVFERLFGTPHGLDFAHLAATYGLEYHRPQSWDELGEALDQAWRR-SGTTVIEVKTDRSDGAQ 552 (566)
T ss_pred eeccCCCC--------cchHHHhcCCCCCCCHHHHHHHhCccccccCcHHHHHHHHhhhccC-CCcEEEEEecChhHHHH
Confidence 99998632 2235667999999999999999999999999999999999999865 67899999999877665
Q ss_pred cchhh
Q psy14416 1053 PQNFS 1057 (1065)
Q Consensus 1053 ~~~~~ 1057 (1065)
.|+..
T Consensus 553 ~~q~l 557 (566)
T COG1165 553 LHQAL 557 (566)
T ss_pred HHHHH
Confidence 54433
No 54
>KOG4166|consensus
Probab=100.00 E-value=6.2e-67 Score=567.02 Aligned_cols=540 Identities=22% Similarity=0.324 Sum_probs=433.2
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
...++++.+.+.+.+++|++|||.||..++|+.+|+.++ .+++|.-|||++|++||.||+|.|||||||++|||||++|
T Consensus 89 vg~tGg~If~emm~rqnV~tVFgYPGGAilpv~dAi~rS~~f~fvLPrHEQgaghaAegYaR~sgKPGvvlvTSGPGATN 168 (675)
T KOG4166|consen 89 VGRTGGDIFVEMMERQNVETVFGYPGGAILPVHDAITRSSSFRFVLPRHEQGAGHAAEGYARSSGKPGVVLVTSGPGATN 168 (675)
T ss_pred cCCchhHHHHHHHHhcCCceEeecCCcceeehHhhhhcCccccccccccccccchhhhhhhhhcCCCcEEEEecCCCccc
Confidence 367999999999999999999999999999999999775 6999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
.++.+++|..|++||+++||+.|+..+|.++||+.|.+.+-|+++||.+.+.+.+++++.|++||.+|.++|||||.+++
T Consensus 169 vvtp~ADAlaDg~PlVvftGQVptsaIGtDAFQEadiVgisRScTKwNvmVkdVedlPrrI~EAFeiATSGRPGPVLVDl 248 (675)
T KOG4166|consen 169 VVTPLADALADGVPLVVFTGQVPTSAIGTDAFQEADIVGISRSCTKWNVMVKDVEDLPRRIEEAFEIATSGRPGPVLVDL 248 (675)
T ss_pred ccchhhHHhhcCCcEEEEecccchhhcccchhccCCeeeeeeccceeheeeecHHHhhHHHHHHhhhhccCCCCCeEeeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCC---HHHHHHHHHHHHhCC
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPG---IAELKQASRLILEAK 500 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~v~~~ae~L~~Ak 500 (1065)
|.|+..+-.-.+ . |.. .+.|+-.+ .......++ ...+++++++|+.||
T Consensus 249 PKDvta~~l~~p-i---p~~----~~lPsn~~---------------------m~~~~~~~~~~v~~~i~~~a~Li~laK 299 (675)
T KOG4166|consen 249 PKDVTAQLLIPP-I---PQA----MRLPSNAY---------------------MSRMPKPPEDFVMSHIEQIARLISLAK 299 (675)
T ss_pred cHHHHHHHhcCC-c---hhh----hcCCchhh---------------------HhhCCCCchhhHHHHHHHHHHHHHhcc
Confidence 999876644221 0 000 01111000 001111223 367999999999999
Q ss_pred CcEEEEccCCCch-hHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccc---c----HHHHhhhcCCCEEEEeCCccccc
Q psy14416 501 APLVIIGKGAAYS-QAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV---S----AARTHALQNADLVLLLGARLNWI 572 (1065)
Q Consensus 501 rPvIlvG~g~~~~-~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~l---g----~~~~~al~~aDlVI~iG~~~~~~ 572 (1065)
||||.+|.|+..+ +....|.+|.|++++||.++.+|-|.++.++++.+ | ..++.+++++||||.+|.+++++
T Consensus 300 KPVlyvG~G~Ln~~d~p~lL~~fser~qIPVtttL~GLGs~d~~d~lSLhMLGMHG~~yAN~Avq~aDLilA~GvRFDDR 379 (675)
T KOG4166|consen 300 KPVLYVGGGCLNSSDGPRLLGRFSERTQIPVTTTLMGLGSYDCDDELSLHMLGMHGTVYANYAVQHADLILAFGVRFDDR 379 (675)
T ss_pred CceEEeCcccccCCcchHHHHHHHHhhcCcceehhhcccCcCCCCchhhhhhcccccceehhhhhccceeEEecceeccc
Confidence 9999999999765 55679999999999999999999999999998754 3 25788999999999999999986
Q ss_pred cccCCCccccCCCe---------EEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHH
Q psy14416 573 LHFGRAPRFKSNVK---------IIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKL 643 (1065)
Q Consensus 573 ~~~g~~~~~~~~~~---------iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~ 643 (1065)
.+ |.+..|.+.++ +||+|.+|..+++...+++.+++|+...|+.+...++.. ..+.+.+|+.++..
T Consensus 380 VT-Gn~s~FAp~Ar~aaae~rggIiHfdispknIgKvvqp~~aveGDv~~~L~~m~s~~kn~----~~~~r~dW~~qin~ 454 (675)
T KOG4166|consen 380 VT-GNLSAFAPRARRAAAEGRGGIIHFDISPKNIGKVVQPHVAVEGDVKLALQGMNSVLKNR----AEELRLDWRNQINV 454 (675)
T ss_pred cc-cchhhhChhhhhhhhcccCceEEEecCHHHhCcccCcceeeeccHHHHHHHHHhHhhcc----cchhhhhHHHHHHH
Confidence 54 44455666666 999999999999999999999999999999988877632 12345668777665
Q ss_pred HHHhhhhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCC-
Q psy14416 644 KCQTNRQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLP- 722 (1065)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP- 722 (1065)
++++..-...+. .....+ . ++.++. .|.+...
T Consensus 455 wK~~fP~sf~~~----------------------------tpGe~i-----k---PQ~vIk-----------~Ldk~t~d 487 (675)
T KOG4166|consen 455 WKQKFPLSFKEE----------------------------TPGEAI-----K---PQYVIK-----------VLDKLTDD 487 (675)
T ss_pred HHHhCCeeeecc----------------------------CCcccc-----C---hHHHHH-----------HHHHhccC
Confidence 544322111111 011112 4 556666 5555544
Q ss_pred --CcEEEEECCCCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCC
Q psy14416 723 --VILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNG 800 (1065)
Q Consensus 723 --~d~ilv~d~G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1065)
...||..+.|.+..|++++|.- . .|
T Consensus 488 ~~~kviitTGVGqHQMWAAqfy~w-----~------------------------------------------kP------ 514 (675)
T KOG4166|consen 488 TGRKVIITTGVGQHQMWAAQFYNW-----K------------------------------------------KP------ 514 (675)
T ss_pred cCceEEEeccccHHHHHHHHHhcc-----c------------------------------------------Cc------
Confidence 4789999999999998866541 0 11
Q ss_pred cccccCcccccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhh
Q psy14416 801 IYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYAS 880 (1065)
Q Consensus 801 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 880 (1065)
+.|..+|. .|+| |+++++|+ +|+
T Consensus 515 -~~~~tSGG--------------------------LGtM----------------------------GfGLPAAI--GAs 537 (675)
T KOG4166|consen 515 -RQWLTSGG--------------------------LGTM----------------------------GFGLPAAI--GAS 537 (675)
T ss_pred -cceeecCC--------------------------cccc----------------------------ccCcchhh--ccc
Confidence 22222333 4555 99999999 999
Q ss_pred heeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCC
Q psy14416 881 IVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLP 960 (1065)
Q Consensus 881 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~ 960 (1065)
+|. |+..|| =+-||+|| .|+.+||+|+ ++.++|
T Consensus 538 VA~--------P~~iVi---------------------------------DIDGDaSF-~Mt~~ELat~-----rq~~~P 570 (675)
T KOG4166|consen 538 VAN--------PDAIVI---------------------------------DIDGDASF-IMTVQELATI-----RQENLP 570 (675)
T ss_pred ccC--------cccEEE---------------------------------eccCCcee-eeehHhhhhh-----hhcCCc
Confidence 999 999999 89999999 9999999999 999999
Q ss_pred EEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEE
Q psy14416 961 VILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSL 1040 (1065)
Q Consensus 961 ~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~l 1040 (1065)
|.|+|+||.- .|+-. +++.+++.....+. .-.+.||-++|+++|+++.||+..++|++.|++++.+ .+|+|
T Consensus 571 VKiLiLNNee--qGMVt-QWq~lFYe~rysHT-----hQ~nPnf~klA~AmGikalRV~K~edL~~k~keflsT-kGPvL 641 (675)
T KOG4166|consen 571 VKILILNNEE--QGMVT-QWQDLFYEARYSHT-----HQENPNFLKLAAAMGIKALRVTKKEDLREKIKEFLST-KGPVL 641 (675)
T ss_pred eEEEEecchh--hhhHH-HHHHHHHHhhhccc-----cccCccHHHHHHhcCCchheeehHHHHHHHHHHHhCC-CCCeE
Confidence 9999999963 12222 23444333332221 1235899999999999999999999999999999987 99999
Q ss_pred EEEEeCCCCCC
Q psy14416 1041 INILINPSADR 1051 (1065)
Q Consensus 1041 i~~~~~~~~~~ 1051 (1065)
+||.++..+-.
T Consensus 642 leV~v~~kehV 652 (675)
T KOG4166|consen 642 LEVIVPHKEHV 652 (675)
T ss_pred EEEEccCccce
Confidence 99999876654
No 55
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=100.00 E-value=2.6e-67 Score=697.11 Aligned_cols=573 Identities=14% Similarity=0.082 Sum_probs=412.5
Q ss_pred ccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccccc
Q psy14416 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 345 (1065)
Q Consensus 267 ~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~ 345 (1065)
..-+++|++.|+++||+++||+||+++++|++++.+ ++|++|.++||++|+|||+||||+||||+||+||+|||++|++
T Consensus 301 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~pL~dAl~~~~~i~~i~~rhErsAafmAdGyAR~TgkpgV~i~TsGPG~tN~l 380 (1655)
T PLN02980 301 AVWASLIIEECTRLGLTYFCVAPGSRSSPLAIAASNHPLTTCIACFDERSLAFHALGYARGSLKPAVVITSSGTAVSNLL 380 (1655)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHhCCCCeEEeccCcchHHHHHHHHHHHhCCCEEEEEeCcHHHHHHH
Confidence 567899999999999999999999999999999965 4799999999999999999999999999999999999999999
Q ss_pred cccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhH------HHHHHHHHHHhhcCCCCEE
Q psy14416 346 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLI------GQHVEKAVRLSTFGKPGVS 419 (1065)
Q Consensus 346 ~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i------~~~i~~A~~~A~~~~~GPV 419 (1065)
|||+||+.+++|||+||||+|.+.++++++|++||.++|+++|||++++++++++ ++.+++|++.|+++|||||
T Consensus 381 ~av~eA~~d~vPlLvItgd~p~~~~~~ga~Q~iDq~~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~rpGPV 460 (1655)
T PLN02980 381 PAVVEASQDFVPLLLLTADRPPELQDAGANQAINQVNHFGSFVRFFFNLPPPTDLIPARMVLTTLDSAVHWATSSPCGPV 460 (1655)
T ss_pred HHHHHHhhcCCCEEEEeCCCCHHHhcCCCCcccchhhHHHhhhheeecCCCccchhhHHHHHHHHHHHHHHHhCCCCCCE
Confidence 9999999999999999999999999999999999999999999999999999883 5899999999999999999
Q ss_pred EEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhC
Q psy14416 420 YLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEA 499 (1065)
Q Consensus 420 ~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~A 499 (1065)
||+||+|.+..+............+ ..|+. ...|............+.++.+.+++++++|++|
T Consensus 461 hL~iP~~~pld~~~~~~~~~~~~~~---~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~A 524 (1655)
T PLN02980 461 HINCPFREPLDGSPTNWMSSCLKGL---DMWMS-------------NAEPFTKYIQMQSSKADGDTTGQITEVLEVIQEA 524 (1655)
T ss_pred EEECccCCccccccccccccccccc---hhccc-------------CCCccccccccccccccccchhhHHHHHHHHHhC
Confidence 9999976533322110000000000 00000 0000000000000111235677899999999999
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCC-C------CCCCC--CCcccccHHH-------HhhhcCCCEEE
Q psy14416 500 KAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMG-K------GVVPD--AHPNCVSAAR-------THALQNADLVL 563 (1065)
Q Consensus 500 krPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~g-k------g~v~~--~hpl~lg~~~-------~~al~~aDlVI 563 (1065)
|||+||+|.++..+.+. ++.+|||++|+||++++++ + |.+|+ +||+++|... ...+.++|+||
T Consensus 525 kRPvIvaG~G~~~~~a~-~~~~LAe~l~~PV~tt~~sg~~~~~~~g~ipe~~~~pl~~g~~g~~~~~~~~~~~~~aDlVl 603 (1655)
T PLN02980 525 KRGLLLIGAIHTEDDIW-AALLLAKHLMWPVVADILSGLRLRKLFKSFPEFELNILFVDHLDHALLSDSVRNWIQFDVVI 603 (1655)
T ss_pred CCcEEEEcCCCchHHHH-HHHHHHHhCCCeEEEeCCCCCCCCccccccccccccccccchHHHHhCchhhhccCCCCEEE
Confidence 99999999998655544 5689999999999999985 4 89999 8888888432 24467999999
Q ss_pred EeCCccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHH
Q psy14416 564 LLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKL 643 (1065)
Q Consensus 564 ~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~ 643 (1065)
++|++++++...++...+.+ .++||||.|+..+++.+..+..|++|+..++++|.+.... .....|.+.++.
T Consensus 604 ~iG~rl~s~~~t~~~~~~~~-~~~I~ID~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~~~~-------~~~~~w~~~~~~ 675 (1655)
T PLN02980 604 QIGSRITSKRVSQMLEKCFP-FSYILVDKHPCRHDPSHLVTHRVQSNIVQFADCLLKAQFP-------RRRSKWHGHLQA 675 (1655)
T ss_pred EeCCccccHHHHHHHHhCCC-CeEEEECCCCCccCCcccceEEEEeCHHHHHHHhhhccCc-------chhHHHHHHHHH
Confidence 99999986544333322223 3599999999999999999999999999999988764321 112468777765
Q ss_pred HHHhhhhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCC
Q psy14416 644 KCQTNRQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPV 723 (1065)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~ 723 (1065)
............. ....++ + +..+++ .|.+.||+
T Consensus 676 ~~~~~~~~~~~~~---------------------------~~~~~l-----~---~~~v~~-----------~L~~~Lp~ 709 (1655)
T PLN02980 676 LDGMVAQEISFQI---------------------------HAESSL-----T---EPYVAH-----------VISEALTS 709 (1655)
T ss_pred HHHHHHHHHHhhh---------------------------hcCCCc-----c---hHHHHH-----------HHHHhCCC
Confidence 5443322211000 001134 5 667888 99999999
Q ss_pred cEEEEECCCCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCccc
Q psy14416 724 ILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG 803 (1065)
Q Consensus 724 d~ilv~d~G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 803 (1065)
|.+|+.|+|+.++....+......+.. ..+ ..+++...| +.
T Consensus 710 d~ivv~d~g~~ird~~~~~~~~~~~~~------------------------------~~~--~~~~~~~~p-------~~ 750 (1655)
T PLN02980 710 DSALFIGNSMAIRDADMYGCSSENYSS------------------------------RIV--DMMLSAELP-------CQ 750 (1655)
T ss_pred CCeEEEECcHHHHHHHHcCCccccccc------------------------------ccc--ccccccccc-------cc
Confidence 999999998654321111000000000 000 000011111 00
Q ss_pred ccCcccccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEecccccc--ccccchhhhhh
Q psy14416 804 GFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIY--GGFDETTYASI 881 (1065)
Q Consensus 804 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~ 881 (1065)
+.. + .+-.|.+|++ +++++ ||++
T Consensus 751 ~i~----------------------~-------------------------------~~~~G~mG~~G~lpaAI--Gaal 775 (1655)
T PLN02980 751 WIQ----------------------V-------------------------------AGNRGASGIDGLLSTAI--GFAV 775 (1655)
T ss_pred cce----------------------E-------------------------------EecCCccchhhhHHHHH--HHhh
Confidence 000 0 0111233664 34444 7776
Q ss_pred eeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccc--cCC
Q psy14416 882 VESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVT--TVL 959 (1065)
Q Consensus 882 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~--~~~ 959 (1065)
+. +++|+ +++|||+| +|+.++|+|+ ++ +++
T Consensus 776 a~---------~r~Vv---------------------------------~i~GDGsF-~m~~~EL~Ta-----~r~~~~l 807 (1655)
T PLN02980 776 GC---------NKRVL---------------------------------CVVGDISF-LHDTNGLSIL-----SQRIARK 807 (1655)
T ss_pred cC---------CCCEE---------------------------------EEEehHHH-HhhhhHHHHh-----hcccCCC
Confidence 64 46788 99999999 9999999999 87 499
Q ss_pred CEEEEEEcCCc--ccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCC
Q psy14416 960 PVILVIVNNNG--IYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTR 1037 (1065)
Q Consensus 960 ~~~~~v~nn~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~ 1037 (1065)
|++|||+||+| ||+.++...... . ..+...+.+.+++||.++|++||++|.+|++.+||+++|+++++. ++
T Consensus 808 pi~iVV~NN~gggi~~~l~~~~~~~-----~-~~~~~~~~~~~~~df~~lA~a~G~~~~rV~~~~eL~~aL~~a~~~-~~ 880 (1655)
T PLN02980 808 PMTILVINNHGGAIFSLLPIAKRTE-----P-RVLNQYFYTSHDISIENLCLAHGVRHLHVGTKSELEDALFTSQVE-QM 880 (1655)
T ss_pred CEEEEEEeCCCcHhhhcCccCCCCc-----c-hhHHHHhcCCCCCCHHHHHHHcCCceeecCCHHHHHHHHHHhhcc-CC
Confidence 99999999998 455443221000 0 000112334467999999999999999999999999999999976 89
Q ss_pred CEEEEEEeCCCCCCCcchhhhh
Q psy14416 1038 PSLINILINPSADRKPQNFSWL 1059 (1065)
Q Consensus 1038 ~~li~~~~~~~~~~~~~~~~~~ 1059 (1065)
|+||||.++++++.+.+...|.
T Consensus 881 p~lIEV~t~~~~~~~~~~~~~~ 902 (1655)
T PLN02980 881 DCVVEVESSIDANAAFHSTLRK 902 (1655)
T ss_pred CEEEEEecChhhhHHHHHHHHH
Confidence 9999999999888776555443
No 56
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=3.3e-62 Score=549.74 Aligned_cols=519 Identities=19% Similarity=0.264 Sum_probs=416.7
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
+.++.+++|+++|++.||+++||+||+.+++|++.+.. +++||+.|.||.+|+||||||||.+| .+++++|.|.|.+.
T Consensus 2 ~~~tvG~YL~~RL~qlgi~~iFGVPGDyNL~lLD~i~~~~~lrWvGn~NELNaaYAADGYaR~~G-i~alvTTfGVGELS 80 (557)
T COG3961 2 SPITVGDYLFDRLAQLGIKSIFGVPGDYNLSLLDKIYSVPGLRWVGNANELNAAYAADGYARLNG-ISALVTTFGVGELS 80 (557)
T ss_pred CceeHHHHHHHHHHhcCCceeeeCCCcccHHHHHHhhcCCCceeecccchhhhhhhhcchhhhcC-ceEEEEecccchhh
Confidence 45789999999999999999999999999999999966 57999999999999999999999999 79999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCC-------Ccc-ChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCC
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGF-------QEC-PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGK 415 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~-------Q~i-dQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~ 415 (1065)
+++||+.+|++++|||+|+|-+++..+..+.+ -++ .+.+|+++++.....+++.+.+++.|+|+++.+...+
T Consensus 81 A~NGIAGSYAE~vpVvhIvG~P~~~~q~~~~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~~A~~eIDrvi~~~~~~~ 160 (557)
T COG3961 81 ALNGIAGSYAEHVPVVHIVGVPTTSAQASGLLLHHTLGDGDFKVFHRMSKEITCAQAMLTDINTAPREIDRVIRTALKQR 160 (557)
T ss_pred hhcccchhhhhcCCEEEEEcCCCcchhhccchheeeccCCchHHHHHHhhhhhhHhhhcCCcchhHHHHHHHHHHHHHhc
Confidence 99999999999999999999998764332211 122 3679999999999999999999999999999998665
Q ss_pred CCEEEEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHH
Q psy14416 416 PGVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRL 495 (1065)
Q Consensus 416 ~GPV~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~ 495 (1065)
.||||.+|.|+...+++.+ .. |... ......+....+.++.++++
T Consensus 161 -RPvYI~lP~dva~~~~~~p-~~--Pl~~-------------------------------~~~~sd~e~~~e~i~~i~~l 205 (557)
T COG3961 161 -RPVYIGLPADVADLPIEAP-LT--PLDL-------------------------------QLKTSDPEALSEVIDTIAEL 205 (557)
T ss_pred -CCeEEEcchHHhcCcCCCC-CC--cccc-------------------------------ccCCCCHHHHHHHHHHHHHH
Confidence 5999999999998887654 12 2211 11112222335678888999
Q ss_pred HHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCccccc--------HHHHhhhcCCCEEEEeCC
Q psy14416 496 ILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVS--------AARTHALQNADLVLLLGA 567 (1065)
Q Consensus 496 L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg--------~~~~~al~~aDlVI~iG~ 567 (1065)
|+++|||+|++|..+.+.+..+++++|++++++|+++++||||.++|.||.|+| ...+++++.||+||.+|+
T Consensus 206 I~~ak~p~ILad~~~~r~~~~~~~~~l~~~t~~p~~~~pmGKg~idEs~P~y~GvY~G~~s~~~vre~vE~aD~il~iG~ 285 (557)
T COG3961 206 INKAKKPVILADALVSRFGLEKELKKLINATGFPVATLPMGKGVIDESHPNYLGVYNGKLSEPEVREAVESADLILTIGV 285 (557)
T ss_pred HhccCCcEEecchhhhhhhhHHHHHHHHHhcCCCeEEeecccccccccCCCeeeEEecccCCHHHHHHhhcCCEEEEece
Confidence 999999999999999988999999999999999999999999999999999998 245778899999999999
Q ss_pred ccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHh
Q psy14416 568 RLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQT 647 (1065)
Q Consensus 568 ~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~ 647 (1065)
.+++..+.+|..++++ .++|+++++...+.......+ ..+++|++|.+.+..+.....
T Consensus 286 ~ltD~~Tg~Ft~~~~~-~~~i~~~~~~v~I~~~~f~~l----~m~~~L~~L~~~i~~~~~~~~----------------- 343 (557)
T COG3961 286 LLTDFNTGGFTYQYKP-ANIIEIHPDSVKIKDAVFTNL----SMKDALQELAKKIDKRNLSAP----------------- 343 (557)
T ss_pred EEeeccccceeeecCc-ccEEEeccCeeEecccccCCe----eHHHHHHHHHHHhhhcccCCC-----------------
Confidence 9999999999877655 688999999877754443333 348899999888763211000
Q ss_pred hhhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEE
Q psy14416 648 NRQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVI 727 (1065)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~il 727 (1065)
..+..... ++........|+ + +..+++ ++...|.++.+|
T Consensus 344 ~~~~~~~~----------------------p~~~~~~~~~pL-----t---q~~~w~-----------~~~~fl~p~dvi 382 (557)
T COG3961 344 PVAYPART----------------------PPTPYPPANEPL-----T---QEWLWN-----------TVQNFLKPGDVI 382 (557)
T ss_pred CccCCCCC----------------------CCCCCCCCCCcc-----c---HHHHHH-----------HHHhhCCCCCEE
Confidence 00000000 001111345678 8 888999 999999999999
Q ss_pred EECCCC-cCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccC
Q psy14416 728 VNNNGI-YGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 806 (1065)
Q Consensus 728 v~d~G~-~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (1065)
++|.|. +++- .+..+|
T Consensus 383 iaetGtS~FG~---------------------------------------------------~~~~lP------------ 399 (557)
T COG3961 383 IAETGTSFFGA---------------------------------------------------LDIRLP------------ 399 (557)
T ss_pred EEccccccccc---------------------------------------------------eeeecC------------
Confidence 999984 1111 122233
Q ss_pred cccccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccc
Q psy14416 807 ETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGE 886 (1065)
Q Consensus 807 ~g~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~ 886 (1065)
.|+ . -+++..||++||++|+++ ||++|.
T Consensus 400 ~~~--------------------------~---------------------~i~Q~lWGSIG~t~pAal--Ga~~A~--- 427 (557)
T COG3961 400 KGA--------------------------T---------------------FISQPLWGSIGYTLPAAL--GAALAA--- 427 (557)
T ss_pred CCC--------------------------e---------------------EEcccchhhcccccHhhh--hhhhcC---
Confidence 111 1 146788999999999999 999999
Q ss_pred cccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEE
Q psy14416 887 VTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 966 (1065)
Q Consensus 887 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 966 (1065)
|+++|| +++||||| |++.||+.++ .|.+++.+|+|+
T Consensus 428 -----~drR~I---------------------------------L~iGDGs~-QlTvQEiStm-----iR~gl~p~ifvl 463 (557)
T COG3961 428 -----PDRRVI---------------------------------LFIGDGSL-QLTVQEISTM-----IRWGLKPIIFVL 463 (557)
T ss_pred -----CCccEE---------------------------------EEEcCchh-hhhHHHHHHH-----HHcCCCcEEEEE
Confidence 999999 99999999 9999999999 999999999999
Q ss_pred cCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCe----EeeCCHHHHHHHHHHHHhcCCCCEEEE
Q psy14416 967 NNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDG----YLCTTVPQIKQAMKKCLQTTTRPSLIN 1042 (1065)
Q Consensus 967 nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~l~~~~~~~~~~~~~~~li~ 1042 (1065)
||+|+ . .+. .+.....+++..++|||.++.++||++. .++++.++|+.+++.+.+..+++.+||
T Consensus 464 NN~GY-T------IEr-----~IHg~~~~YNdI~~Wd~~~l~~afg~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~lIE 531 (557)
T COG3961 464 NNDGY-T------IER-----AIHGPTAPYNDIQSWDYTALPEAFGAKNGEAKFRATTGEELALALDVAFANNDRIRLIE 531 (557)
T ss_pred cCCCc-E------EEe-----hhcCCCcCcccccccchhhhhhhcCCCCceEEEeecChHHHHHHHHHHhcCCCceEEEE
Confidence 99993 2 111 0122345688889999999999999973 578999999999999998878999999
Q ss_pred EEeCCCCCCCc
Q psy14416 1043 ILINPSADRKP 1053 (1065)
Q Consensus 1043 ~~~~~~~~~~~ 1053 (1065)
|.+++.+..+.
T Consensus 532 v~lp~~D~P~~ 542 (557)
T COG3961 532 VMLPVLDAPEL 542 (557)
T ss_pred EecCcccCCHH
Confidence 99977666543
No 57
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=100.00 E-value=1.5e-59 Score=553.71 Aligned_cols=415 Identities=16% Similarity=0.149 Sum_probs=340.0
Q ss_pred HHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccccccc
Q psy14416 269 ANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGG 347 (1065)
Q Consensus 269 ~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~a 347 (1065)
.+++|++.|+++||+|+||+||+++.+|++++.+ ++|++|.++||++|+|||+||+|+||||+||++|+|||++|+++|
T Consensus 2 ~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~g 81 (432)
T TIGR00173 2 WASVLVEELVRLGVRHVVISPGSRSTPLALAAAEHPRLRVHVHIDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPA 81 (432)
T ss_pred hHHHHHHHHHHcCCCEEEECCCcccHHHHHHHHhCCCcEEEEecCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHH
Confidence 3689999999999999999999999999999954 589999999999999999999999999999999999999999999
Q ss_pred cccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhh------HHHHHHHHHHHhhcCCCCEEEE
Q psy14416 348 MANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHL------IGQHVEKAVRLSTFGKPGVSYL 421 (1065)
Q Consensus 348 v~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~------i~~~i~~A~~~A~~~~~GPV~L 421 (1065)
+++|+.+++|||+|+|+++....+++++|++||.++|+++|||+.+++++++ +++.+++|++.|++++||||||
T Consensus 82 l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l 161 (432)
T TIGR00173 82 VIEASYSGVPLIVLTADRPPELRGCGANQTIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHI 161 (432)
T ss_pred HHHhcccCCcEEEEeCCCCHHHhCCCCCcccchhhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEE
Confidence 9999999999999999999999999999999999999999999999999988 9999999999999999999999
Q ss_pred ecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCC
Q psy14416 422 DFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKA 501 (1065)
Q Consensus 422 ~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~Akr 501 (1065)
+||.|++..+.+..... + .|+.. + ..........++++.+++++++|++|||
T Consensus 162 ~iP~dv~~~~~~~~~~~--~-------~~~~~---------------~----~~~~~~~~~~~~~~~i~~~~~~l~~Akr 213 (432)
T TIGR00173 162 NVPFREPLYPDPLLQPL--Q-------PWLRS---------------G----VPTVTTGPPVLDPESLDELWDRLNQAKR 213 (432)
T ss_pred eCCCCCCCCCCCccccc--c-------ccccc---------------c----cccccCCCCCCChhhHHHHHHHHhhcCC
Confidence 99999965543211000 0 00000 0 0000111223567789999999999999
Q ss_pred cEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHH--------HHhhhcCCCEEEEeCCcccccc
Q psy14416 502 PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAA--------RTHALQNADLVLLLGARLNWIL 573 (1065)
Q Consensus 502 PvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~--------~~~al~~aDlVI~iG~~~~~~~ 573 (1065)
|+|++|.++..+ +.++|.+|+|++++||++++++|+.+ ++| +++|.. ..+++ ++|+||.+|+++.++.
T Consensus 214 Pvi~~G~g~~~~-a~~~l~~lae~~~~PV~tt~~~~~~~-~~~-~~~G~~~~~~~~~~~~~~~-~aDlvl~lG~~~~~~~ 289 (432)
T TIGR00173 214 GVIVAGPLPPAE-DAEALAALAEALGWPLLADPLSGLRG-GPH-LVIDHYDLLLANPELREEL-QPDLVIRFGGPPVSKR 289 (432)
T ss_pred cEEEEcCCCcHH-HHHHHHHHHHhCCCeEEEeCCCCCCC-CCC-CCcCHHHHHhcCCchhhhC-CCCEEEEeCCCcchhH
Confidence 999999999865 78999999999999999999999999 778 888732 23456 9999999999998776
Q ss_pred ccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhccc
Q psy14416 574 HFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKL 653 (1065)
Q Consensus 574 ~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~ 653 (1065)
+.+|. +.++.++||||.|+..+++++..++.|++|++.+|++|.+.++. ....|.+.|.+..+++....+
T Consensus 290 ~~~~~--~~~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 359 (432)
T TIGR00173 290 LRQWL--ARQPAEYWVVDPDPGWLDPSHHATTRLEASPAEFAEALAGLLKN--------PDAAWLDRWLEAEAKAREALR 359 (432)
T ss_pred HHHHH--hCCCCcEEEECCCCCccCCCCCceEEEEECHHHHHHHhhhccCC--------CChHHHHHHHHHHHHHHHHHH
Confidence 66553 23457899999999999999999999999999999999888752 234687777776655444332
Q ss_pred chhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCC
Q psy14416 654 PVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGI 733 (1065)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~ 733 (1065)
+.. ...|+ + +..+++ .|.+.+|+|.+|+.|+|+
T Consensus 360 ~~~----------------------------~~~~i-----~---p~~~~~-----------~l~~~lp~d~ivv~d~g~ 392 (432)
T TIGR00173 360 EVL----------------------------AEEPL-----S---ELSLAR-----------ALSQLLPEGAALFVGNSM 392 (432)
T ss_pred HHh----------------------------ccCCc-----c---HHHHHH-----------HHHHhCCCCCeEEEECCH
Confidence 220 12345 6 778889 999999999999999999
Q ss_pred cCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccc
Q psy14416 734 YGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIV 780 (1065)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~ 780 (1065)
+.+|...|+.. ..-|.+.+.-.+.|.+|.++++++|+++
T Consensus 393 ~~~~~~~~~~~--------~~~~~~~~~~~g~g~mG~glp~aiGa~~ 431 (432)
T TIGR00173 393 PIRDLDTFAQP--------PDKPIRVFANRGASGIDGTLSTALGIAL 431 (432)
T ss_pred HHHHHHhcCCc--------CCCCceEEecCchhhHHHHHHHHHHhhc
Confidence 99997755432 1135666666666888888888877654
No 58
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-56 Score=489.23 Aligned_cols=550 Identities=22% Similarity=0.263 Sum_probs=433.0
Q ss_pred cCccHHHHHHHHHHhcCc---------eEEEeecC-CchhhhHHHhhcC--CceEEEccCCchHHHHHHHHHHHhCCCeE
Q psy14416 265 EELSANQVIAQALKFQGI---------EYVFGIVG-IPVIELAMACQQE--GIHYIGMRNEQAACYAAQAIGYLTKKPGV 332 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV---------~~vfg~pG-~~~~~l~~al~~~--~i~~i~~~~E~~A~~~A~g~ar~tgkpgv 332 (1065)
..++.+++|++.|.+.=+ .-+|.+-| ..+..+-+||++. -+.++..+||++-+.+|.+|+|+..|-.+
T Consensus 5 vRlT~aQAlvrfL~~Q~~~~ge~~p~~~GvfaIFGHGNVaGiGeAL~~~~~~l~~yqg~NEQgMAhaAiayaKq~~Rrr~ 84 (617)
T COG3962 5 VRLTMAQALVRFLAQQMTEIGEIVPFVGGVFAIFGHGNVAGIGEALYQVRDHLPTYQGHNEQGMAHAAIAYAKQHRRRRI 84 (617)
T ss_pred ehhHHHHHHHHHHHhhhhhhcccccccceeeEEecCcchhhhHHHHHhCccccchhhcccHhHHHHHHHHHHHHHhhcee
Confidence 467899999999987522 23445555 4456788899653 49999999999999999999998877666
Q ss_pred EEEe--ccccccccccccccccccCcceEeecCCCccCCCCCCCCCccC--------hhhhhcccccEEeeCCChhhHHH
Q psy14416 333 CLVV--SGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECP--------QVELARPYCKYSARPPNIHLIGQ 402 (1065)
Q Consensus 333 ~~~t--sGpG~~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~id--------Q~~l~~~~~k~s~~l~~~~~i~~ 402 (1065)
+.|| .|||++|++++.+-|..+|+|+|+|-||.-...+...-+|.+. -.+.|+|++||.-+++.||++..
T Consensus 85 ~A~tsSiGPGA~NmvTaAalA~~NrlPvLllPgDvfA~R~PDPVLQQ~E~~~d~~it~NDcfrPVSRYfDRItRPEQl~s 164 (617)
T COG3962 85 YAVTSSIGPGAANMVTAAALAHVNRLPVLLLPGDVFATRQPDPVLQQLEQFGDGTITTNDCFRPVSRYFDRITRPEQLMS 164 (617)
T ss_pred eEEecccCCcHHHHHHHHHHHHhhcCceEeeccchhcccCCChHHHhhhccccCceecccccccHHHHhhhcCCHHHHHH
Confidence 6665 4999999999999999999999999999876554433344433 34789999999999999999999
Q ss_pred HHHHHHHHhhcC-CCCEEEEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCC
Q psy14416 403 HVEKAVRLSTFG-KPGVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTL 481 (1065)
Q Consensus 403 ~i~~A~~~A~~~-~~GPV~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1065)
.+.||++....+ ..|||.|.+|.|++.+.++.++ + ||.+ +.....+
T Consensus 165 al~rA~~VmTDPA~~GpvTl~l~QDVq~eA~Dyp~----------------~---------FF~~--------rv~~~rR 211 (617)
T COG3962 165 ALPRAMRVMTDPADCGPVTLALCQDVQAEAYDYPE----------------S---------FFEK--------RVWRIRR 211 (617)
T ss_pred HHHHHHHHhCChhhcCceEEEechhhhhhhcCCcH----------------H---------hhhh--------hhhhccC
Confidence 999999998754 6899999999999887765322 1 1111 1223456
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCccccc-------HHHHh
Q psy14416 482 PWPGIAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVS-------AARTH 554 (1065)
Q Consensus 482 ~~p~~~~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg-------~~~~~ 554 (1065)
+.|++.+++.++++|+.+|||+||+|+|+..+++.++|++|+|..|+||+.|--||+.++.+||+.+| .+.+.
T Consensus 212 ~~Pd~~eL~~A~~lik~ak~PlIvaGGGv~YS~A~~~L~af~E~~~iPv~ETQaGKsal~~dhplNlG~vGvTGt~AAN~ 291 (617)
T COG3962 212 PPPDERELADAAALIKSAKKPLIVAGGGVLYSGAREALRAFAETHGIPVVETQAGKSALAWDHPLNLGGVGVTGTLAANR 291 (617)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEecCceeechHHHHHHHHHHhcCCceEeccCCcccccccCccccccccccchHHHHh
Confidence 78999999999999999999999999999999999999999999999999999999999999999998 35677
Q ss_pred hhcCCCEEEEeCCccccccccCCCcccc-CCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCC
Q psy14416 555 ALQNADLVLLLGARLNWILHFGRAPRFK-SNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSA 633 (1065)
Q Consensus 555 al~~aDlVI~iG~~~~~~~~~g~~~~~~-~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~ 633 (1065)
+..+|||||.+|+++.++.+..|.. |. ++.+++.++..+ +|....-...+++|++..|++|.+.|.. +..
T Consensus 292 ~A~~ADlVigiGTR~~DFTTgS~al-F~~~~~k~l~lNV~~--~da~K~~a~~lvaDAr~~L~~L~~~L~g------~~~ 362 (617)
T COG3962 292 AAEEADLVIGIGTRLQDFTTGSKAL-FKNPGVKFLNLNVQP--FDAYKHDALPLVADARAGLEALSEALGG------YRT 362 (617)
T ss_pred hhhhcCEEEEecccccccccccHHH-hcCCCceEEEeeccc--ccccccccceehhHHHHHHHHHHHHhcc------ccc
Confidence 8899999999999999877766643 43 667888887766 4444446788999999999999999983 344
Q ss_pred CchHHHHHHHHHHhhhhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccc
Q psy14416 634 TSPWWQELKLKCQTNRQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVE 713 (1065)
Q Consensus 634 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1065)
...|.++..+..+.|.....+.. ++..+ ....| + +..++.
T Consensus 363 ~~~w~~~~~~~~~~w~~~~~~~~--------a~~~~--------------lnt~p------t---q~~vig--------- 402 (617)
T COG3962 363 AAGWTDERERLKAAWDAEADAPT--------AKNHF--------------LNTLP------T---QTQVIG--------- 402 (617)
T ss_pred chhHHHHHHHhhhhhhhhccccc--------ccccc--------------cccCc------c---chhHHH---------
Confidence 56688888777666665544330 00000 01222 3 567777
Q ss_pred hhhhhhcCCCcEEEEECCCCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceee
Q psy14416 714 SGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVIL 793 (1065)
Q Consensus 714 ~g~L~~~LP~d~ilv~d~G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1065)
.+++..+++++|+...|++++..+++|.. . ....++|++|
T Consensus 403 --av~~~~~~~svvvcAAGsLPGdLhkLW~~-----~-----------------------~p~~YH~EYg---------- 442 (617)
T COG3962 403 --AVQRTISDDSVVVCAAGSLPGDLHKLWRA-----G-----------------------VPGTYHLEYG---------- 442 (617)
T ss_pred --HHHhhcCCCcEEEEeCCCCcHHHHHHhcc-----C-----------------------CCCceeeeec----------
Confidence 99999999999999999999988887774 1 1445778888
Q ss_pred eeecCCCcccccCcccccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccc
Q psy14416 794 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 873 (1065)
Q Consensus 794 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 873 (1065)
|.|| |+-...
T Consensus 443 ------------------------------------------fSCM----------------------------GYEiaG 452 (617)
T COG3962 443 ------------------------------------------FSCM----------------------------GYEIAG 452 (617)
T ss_pred ------------------------------------------cccc----------------------------cccccc
Confidence 6777 555555
Q ss_pred cchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccC
Q psy14416 874 DETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESG 953 (1065)
Q Consensus 874 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~ 953 (1065)
++ +++++. |++.|+ .++||||| +|..+||.|.
T Consensus 453 ~l--G~K~a~--------pdreV~---------------------------------vmVGDGSy-mMlnSEL~Ts---- 484 (617)
T COG3962 453 GL--GAKAAE--------PDREVY---------------------------------VMVGDGSY-MMLNSELATS---- 484 (617)
T ss_pred cc--ccccCC--------CCCeEE---------------------------------EEEcccch-hhhhHHHHHH----
Confidence 55 777777 999999 99999999 9999999999
Q ss_pred ccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCC---CCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHH
Q psy14416 954 EVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPT---SLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKK 1030 (1065)
Q Consensus 954 ~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~ 1030 (1065)
+.+++++++++++|.| |+.+..-. .-...+.+.+..... ...+.+||.+.|+.||++.++|.|.+||+.||++
T Consensus 485 -v~~g~Ki~Vvl~DN~G-yGCIn~LQ--m~~Gg~sf~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~~i~eL~aAL~~ 560 (617)
T COG3962 485 -VMLGKKIIVVLLDNRG-YGCINRLQ--MATGGASFNNLLRDTDHEEEILQVDFAAHAESYGAKAYKVGTIEELEAALAD 560 (617)
T ss_pred -HHcCCeEEEEEECCCC-cchhhhhh--hhcCcchhhhhhhhhcccCCCCcccHHHHHhhcCceeEecCCHHHHHHHHHH
Confidence 9999999999999999 55433311 111112221111111 3367899999999999999999999999999999
Q ss_pred HHhcCCCCEEEEEEeCCCCCCCcchhhhh
Q psy14416 1031 CLQTTTRPSLINILINPSADRKPQNFSWL 1059 (1065)
Q Consensus 1031 ~~~~~~~~~li~~~~~~~~~~~~~~~~~~ 1059 (1065)
+.++ ++++||+|.++|........-||-
T Consensus 561 Ak~~-~~ttvi~I~t~P~~~t~~g~~WWd 588 (617)
T COG3962 561 AKAS-DRTTVIVIDTDPKTTTDDGGSWWD 588 (617)
T ss_pred HHhC-CCCEEEEEecCCccccCCCCceee
Confidence 9987 999999999999999887777774
No 59
>KOG1184|consensus
Probab=100.00 E-value=2.3e-56 Score=500.19 Aligned_cols=526 Identities=19% Similarity=0.267 Sum_probs=411.5
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
.++.+++|+++|.+.||+++||+||+.++.|++-++. +++|++.|.+|.+|+|+||||||.+| .++|++|.|.|.+.+
T Consensus 3 ~i~~G~YLf~RL~q~gvksvfgVPGDFNL~LLD~l~~~~~lrwvGn~NELNaAYAADGYAR~~G-i~a~VtTfgVGeLSA 81 (561)
T KOG1184|consen 3 PITLGEYLFRRLVQAGVKTVFGVPGDFNLSLLDKLYAVPGLRWVGNCNELNAAYAADGYARSKG-IGACVTTFGVGELSA 81 (561)
T ss_pred ceeHHHHHHHHHHHcCCceeEECCCcccHHHHHHhhhcCCceeecccchhhhhhhhcchhhhcC-ceEEEEEeccchhhh
Confidence 5789999999999999999999999999999999976 57999999999999999999999999 899999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCCC--C-----cc-ChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCC
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGGF--Q-----EC-PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKP 416 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga~--Q-----~i-dQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~ 416 (1065)
++||+.||.+++|||+|+|-+++...+.+.+ + ++ -+.+|++.++.++..+.+.+++++.||+|++.|....
T Consensus 82 lNGIAGsYAE~vpVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~~~e~A~~~ID~aI~~~~~~~- 160 (561)
T KOG1184|consen 82 LNGIAGAYAENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMINDIEDAPEQIDKAIRTALKES- 160 (561)
T ss_pred hcccchhhhhcCCEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhcCHhhhHHHHHHHHHHHHHhc-
Confidence 9999999999999999999999865443321 1 11 2679999999999999999999999999999997543
Q ss_pred CEEEEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHH
Q psy14416 417 GVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLI 496 (1065)
Q Consensus 417 GPV~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L 496 (1065)
.||||.+|.|+...+++...+.+.|..+ .+.+.......+.++.+++++
T Consensus 161 rPVYi~iP~n~~~~~~~~~~l~~~p~~~-------------------------------~~~~s~~e~~~~~v~~i~e~i 209 (561)
T KOG1184|consen 161 KPVYIGVPANLADLPVPAFGLLPVPLDL-------------------------------SPKPSNKEGLEEAVDAILELI 209 (561)
T ss_pred CCeEEEeecccccCcCCcccCCCCCccc-------------------------------CCCCCcHHHHHHHHHHHHHHh
Confidence 5899999999998888766433333221 222333344467888999999
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH--------HHHhhhcCCCEEEEeCCc
Q psy14416 497 LEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLGAR 568 (1065)
Q Consensus 497 ~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~--------~~~~al~~aDlVI~iG~~ 568 (1065)
.++++|+|++|...++....++..+|++++++|++.++|+||.++++||.|.|. ...+.++.+|+||.+|+.
T Consensus 210 ~~~~~Pvil~~~~~~r~~~~~~~~~l~~~~~~p~~vtp~gKg~i~E~hp~y~Gvy~G~vs~~~~~e~vesaDlil~~G~~ 289 (561)
T KOG1184|consen 210 NKAKKPVILGDPKLRRAKAESAFVELADATGFPVFVTPMGKGFIPESHPHYGGVYWGAVSTPFVKEIVESADLIIFAGPL 289 (561)
T ss_pred hhccCCeeeccccccHHHHHHHHHHHHHhhCCCeeEeecccccccCcCCceeeEEecccccHhHHHHHhhcCeEEEeccc
Confidence 999999999999888888899999999999999999999999999999999883 456788999999999999
Q ss_pred cccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhh
Q psy14416 569 LNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 648 (1065)
Q Consensus 569 ~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~ 648 (1065)
+++..+.+|.... ++.++++++.|...+.......+ +.+.+|+.|+++++....++. . ..
T Consensus 290 ~sd~ss~~~~~~~-k~~~~i~~~~d~v~i~~~~f~~v----~mk~~l~~Lak~I~~~~~~~~--------~-------y~ 349 (561)
T KOG1184|consen 290 FNDYSSGGFSYLY-KKKNAIEFHSDRVKIRNATFGGV----LMKDFLQELAKRIKKNKTSYE--------N-------YV 349 (561)
T ss_pred ccccccceeEeec-CccceEEEecceEEeccccccce----eHHHHHHHHHHhhcccccchh--------c-------cc
Confidence 9998888886544 46788989988765543211122 568999999998863211110 0 00
Q ss_pred hhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEE
Q psy14416 649 RQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 728 (1065)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv 728 (1065)
+...... .+ -+.....++ + .-.+++ +++..+.+.++++
T Consensus 350 ~~~~~~~----------------~~-------~~~~~~~~l-----~---~~~~~~-----------~~~~~l~~~d~v~ 387 (561)
T KOG1184|consen 350 RIPVPEP----------------KP-------LACPPNAPL-----R---QEWMWN-----------HIQKFLSSGDVVI 387 (561)
T ss_pred ccCCCCC----------------CC-------CCCCCcchh-----h---HHHHHH-----------HHHhhcCCCceEE
Confidence 0011000 00 000123344 4 555677 8999999999999
Q ss_pred ECCCC-cCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCc
Q psy14416 729 NNNGI-YGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 807 (1065)
Q Consensus 729 ~d~G~-~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 (1065)
.+.|. -++|. +..+| .
T Consensus 388 ~ETG~S~F~~~---------------------------------------------------~~~fP------------~ 404 (561)
T KOG1184|consen 388 AETGDSWFGIN---------------------------------------------------QTKFP------------K 404 (561)
T ss_pred Eecccceecce---------------------------------------------------eeccc------------c
Confidence 99874 11111 11122 1
Q ss_pred ccccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheecccc
Q psy14416 808 TTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEV 887 (1065)
Q Consensus 808 g~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ 887 (1065)
|+ . -.+++.|+++||+.|+++ +++++.
T Consensus 405 g~--------------------------~---------------------~~~q~~wgsIG~svga~l--G~a~a~---- 431 (561)
T KOG1184|consen 405 GC--------------------------G---------------------YESQMQWGSIGWSVGATL--GYAQAA---- 431 (561)
T ss_pred cc--------------------------c---------------------eEEEEEEeeccccchhhh--hhhhcc----
Confidence 11 1 135788999999999999 888888
Q ss_pred ccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEc
Q psy14416 888 TTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVN 967 (1065)
Q Consensus 888 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~n 967 (1065)
|+++|| +++||||| |++.|+++++ .|.++|.+|+++|
T Consensus 432 ----~e~rvi---------------------------------lfiGDGs~-qlTvQeiStm-----ir~gl~~~if~~N 468 (561)
T KOG1184|consen 432 ----PEKRVI---------------------------------LFIGDGSF-QLTVQEISTM-----IRWGLKPIIFLIN 468 (561)
T ss_pred ----CCceEE---------------------------------EEecCccc-eeeHHHHHHH-----HhcCCCcEEEEEe
Confidence 889999 99999999 9999999999 9999999999999
Q ss_pred CCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCC-----eEeeCCHHHHHHHHHHHH-hcCCCCEEE
Q psy14416 968 NNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHD-----GYLCTTVPQIKQAMKKCL-QTTTRPSLI 1041 (1065)
Q Consensus 968 n~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~l~~~~~~~~-~~~~~~~li 1041 (1065)
|+|+.. + . +..+ .+ +....+|||.++.++||.. .+++.+.+|+.++.+..+ +..+++.||
T Consensus 469 N~GYTI---E----~-----~IH~-~~-Yn~I~~Wd~~~l~~afg~~~gk~~~~~v~~~~e~~~~~~~~~~~~~~~i~li 534 (561)
T KOG1184|consen 469 NGGYTI---E----V-----EIHD-GP-YNDIQNWDYTALLEAFGAGEGKYETHKVRTEEELVEAIKDATFEKNDKIRLI 534 (561)
T ss_pred CCceEE---E----E-----eecC-CC-ccccccchHHHHHHhhcCccceeEEeeeccchHHHHHHhhhhhcccCceEEE
Confidence 999422 0 0 1122 23 7777889999999999986 478999999999999887 555889999
Q ss_pred EEEeCCCCCCCcchhhhhH
Q psy14416 1042 NILINPSADRKPQNFSWLT 1060 (1065)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~~~ 1060 (1065)
||.++..+..+. -..|-.
T Consensus 535 Ev~l~~~D~p~~-L~~~~~ 552 (561)
T KOG1184|consen 535 EVILPVDDAPKE-LLEWGS 552 (561)
T ss_pred EEecCcccChHH-HHHHHH
Confidence 999987776544 444543
No 60
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=100.00 E-value=1.2e-55 Score=467.20 Aligned_cols=543 Identities=19% Similarity=0.265 Sum_probs=440.1
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHH-hCCCeEEEEecccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYL-TKKPGVCLVVSGPGLL 342 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~-tgkpgv~~~tsGpG~~ 342 (1065)
.+|...++-+..|++.||+..||+||..+.|++.+|++. +|+.+..||-..|++||.||.|+ .|..|+|+-||||+-+
T Consensus 2 akmravdaav~vlekegi~~afgvpgaainp~ysalr~~g~i~hvlarhvegashmaegytra~~gnigvcigtsgpagt 81 (592)
T COG3960 2 AKMRAVDAAVYVLEKEGITTAFGVPGAAINPFYSALRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGT 81 (592)
T ss_pred cchhhhhHHHHHHHhcCcceecCCCccccCHHHHHHHhcCcHHHHHHHHhcchhhhhcccccccCCceEEEecCCCCCcc
Confidence 356777888889999999999999999999999999876 59999999999999999999997 5899999999999999
Q ss_pred ccccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEe
Q psy14416 343 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLD 422 (1065)
Q Consensus 343 N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~ 422 (1065)
..++|++.|..|.+|+++|||+.|+.......||..|...+.+|++||...+..|..++.++++||....++|||||.|+
T Consensus 82 dmitglysa~adsipilcitgqaprarl~kedfqavdi~~ia~pv~kwavtv~epalvp~v~qkafhlmrs~rpgpvlid 161 (592)
T COG3960 82 DMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKWAVTVREPALVPRVLQQAFHLMRSGRPGPVLID 161 (592)
T ss_pred chhhhhhhcccccccEEEecCCCchhhhchhhhhhhhHHHhhhhhhhhhhhhcchhhhHHHHHHHHHHHhcCCCCCeEEe
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCc
Q psy14416 423 FPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAP 502 (1065)
Q Consensus 423 iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrP 502 (1065)
+|+|++..+++-+... + . +.+...+.......++++.+|..++||
T Consensus 162 lp~dvq~aeiefd~d~---y-------------------------e-------pl~~~kpaatr~qaekalaml~~aerp 206 (592)
T COG3960 162 LPFDVQVAEIEFDPDM---Y-------------------------E-------PLPVYKPAATRVQAEKALAMLIQAERP 206 (592)
T ss_pred cccceEEEEEecCccc---c-------------------------C-------cCCcCCchhHHHHHHHHHHHHhhccCc
Confidence 9999998877533211 0 0 112222333456778899999999999
Q ss_pred EEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH--------HHHhhhcCCCEEEEeCCccccccc
Q psy14416 503 LVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLGARLNWILH 574 (1065)
Q Consensus 503 vIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~--------~~~~al~~aDlVI~iG~~~~~~~~ 574 (1065)
+|++|+|....++.+.+.+|||.+|+||+.|.||-|++|++||+..|+ +.+..+..+|+|+-+|.+...+.
T Consensus 207 livagggiinadaa~l~~efael~gvpviptlmgwg~ipddhplmagm~glqtshrygnatll~sd~vfgignrwanrh- 285 (592)
T COG3960 207 LIVAGGGVINADAAALLQEFAELTGVPVIPTLMGWGCIPDDHPLMAGMVGLQTSHRYGNATLLASDMVFGIGNRWANRH- 285 (592)
T ss_pred EEEecCceecccHHHHHHHHHHHcCCcccchhccccccCCcchhhcccccceecccccchhhhhhhheeeccchhhhcc-
Confidence 999999999889999999999999999999999999999999998884 34556779999999999987654
Q ss_pred cCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccc
Q psy14416 575 FGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLP 654 (1065)
Q Consensus 575 ~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 654 (1065)
.+....+.+..+.||||+.|..+++.+.+|+.|+.|+.+.|+.+++...+.+.....+.+..|.+.++++++...+.. .
T Consensus 286 tgsv~vyt~gr~fihvdieptqigrvf~pdlgivsda~aal~~~ldva~ewk~agkl~~~~aw~~~cq~rkrtl~rkt-h 364 (592)
T COG3960 286 TGSVEVYTEGRKFIHVDIEPTQIGRVFCPDLGIVSDAKAALTLLLDVAQEWKKAGKLPCRKAWVADCQQRKRTLLRKT-H 364 (592)
T ss_pred cCceeeeecCceEEEEeccccccceeecCccceeechHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhhc-c
Confidence 344445567789999999999999999999999999999999988765433333344567788887776543322211 1
Q ss_pred hhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCc
Q psy14416 655 VILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIY 734 (1065)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~ 734 (1065)
-+..|+ . ++.+++ ++++..+.|...++-.|.+
T Consensus 365 -----------------------------fd~vp~-----k---pqrvye-----------emn~~fgrd~~yvstigls 396 (592)
T COG3960 365 -----------------------------FDNVPV-----K---PQRVYE-----------EMNKAFGRDVCYVTTIGLS 396 (592)
T ss_pred -----------------------------cccCCC-----C---HHHHHH-----------HHHhhcCCceeEEEeccHH
Confidence 234567 7 889999 9999999999888876532
Q ss_pred CcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccc
Q psy14416 735 GGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIV 814 (1065)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 814 (1065)
..- + -+++.+..| ++|.|+|.
T Consensus 397 qia---------------------------------------------~--aqflhv~~p-------r~wincgq----- 417 (592)
T COG3960 397 QIA---------------------------------------------A--AQFLHVFKP-------RHWINCGQ----- 417 (592)
T ss_pred HHh---------------------------------------------h--hhhhhhcCC-------cceeecCc-----
Confidence 111 1 234556677 88999988
Q ss_pred cccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccE
Q psy14416 815 ESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVI 894 (1065)
Q Consensus 815 ~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~ 894 (1065)
-|.+ ||.+++++ +...+. |.+
T Consensus 418 ---------------------agpl----------------------------gwtipaal--gv~~ad--------p~r 438 (592)
T COG3960 418 ---------------------AGPL----------------------------GWTIPAAL--GVCAAD--------PKR 438 (592)
T ss_pred ---------------------cCCc----------------------------ccccchhh--ceeecC--------CCC
Confidence 5555 88888777 666666 999
Q ss_pred EEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCC
Q psy14416 895 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 974 (1065)
Q Consensus 895 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~ 974 (1065)
.|+ .+.||--| +|..-+|+-- .+.++|-+-|++||. |-|
T Consensus 439 ~vv---------------------------------alsgdydf-qfmieelavg-----aq~k~pyihv~vnna--ylg 477 (592)
T COG3960 439 NVV---------------------------------AISGDYDF-QFLIEELAVG-----AQFKIPYIHVLVNNA--YLG 477 (592)
T ss_pred ceE---------------------------------EeecCchH-HHHHHHHhhh-----hcccCceEEEEecch--HHH
Confidence 999 99999999 9999999998 999999999999994 333
Q ss_pred CchhhHhHHhh----cCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHH---HhcCCCCEEEEEEeCC
Q psy14416 975 FDEATYASIVE----SGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKC---LQTTTRPSLINILINP 1047 (1065)
Q Consensus 975 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~---~~~~~~~~li~~~~~~ 1047 (1065)
+.....+.+-. +..++....+...+-++|.-++++.+||+..+|.+++|+..|++++ ++....|+++|+++++
T Consensus 478 lirqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv~~p~e~a~af~~a~~lm~eh~vpvvve~iler 557 (592)
T COG3960 478 LIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQHRVPVVVEVILER 557 (592)
T ss_pred HHHHHHhcCCccceeeehhhccCCccccccCccceeehhccCceeEEecChHHhhHHHHHHHHHHHhcCCCeeeehHHHH
Confidence 33221221111 1112222333455678999999999999999999999999999876 3444789999999876
Q ss_pred CCCC
Q psy14416 1048 SADR 1051 (1065)
Q Consensus 1048 ~~~~ 1051 (1065)
-.+.
T Consensus 558 vtni 561 (592)
T COG3960 558 VTNI 561 (592)
T ss_pred hhcc
Confidence 5543
No 61
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.1e-52 Score=503.13 Aligned_cols=296 Identities=36% Similarity=0.537 Sum_probs=263.6
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 87 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l 87 (1065)
+||++|+|++.|+++||++|||+||+.+++++++|.+.+|++|.+|||++|+|||+||+|+|||||||++|+|||++|++
T Consensus 1 ~~~ga~~lv~~L~~~GV~~VFGiPG~~i~~~~dal~~~~i~~I~~RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~~ 80 (550)
T COG0028 1 MMTGAEALVEALEANGVDTVFGIPGGSILPLYDALYDSGIRHILVRHEQGAAFAADGYARATGKPGVCLVTSGPGATNLL 80 (550)
T ss_pred CCcHHHHHHHHHHHcCCcEEEeCCCccHHHHHHHHHhCCCcEEEeccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHH
Confidence 47999999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc-------
Q psy14416 88 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR------- 160 (1065)
Q Consensus 88 ~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP------- 160 (1065)
+||++|+.|++|||+||||.++...+++.|||.|+..|+++++||++++.+++++++.+++|++.|.++||||
T Consensus 81 tgla~A~~d~~Pll~itGqv~~~~~g~~afQe~D~~~l~~p~tk~~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~ 160 (550)
T COG0028 81 TGLADAYMDSVPLLAITGQVPTSLIGTDAFQEVDQVGLFRPITKYNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPK 160 (550)
T ss_pred HHHHHHHhcCCCEEEEeCCccccccCcchhhhcchhhHhhhhheeEEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcCh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 161 Dv~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~aa~~L~~AkrPvIl~G~G~~~a~a~~~l~~lae~~~~Pv~~t~~gkg~ 240 (550)
T COG0028 161 DVLAAEAEEPGPEPAILPPYRPAPPPPEAIRKAAELLAEAKRPVILAGGGVRRAGASEELRELAEKLGAPVVTTLMGKGA 240 (550)
T ss_pred hHhhcccccccccccccccCCCCCCcHHHHHHHHHHHHhCCCCEEEECCCccccccHHHHHHHHHHHCCCEEEccCcCcc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 241 ~p~~hp~~lG~~g~~g~~~a~~~~~~aDlll~vG~rf~~~~~~~~~f~~~~~ii~iDidp~ei~k~~~~~~~i~gD~~~~ 320 (550)
T COG0028 241 VPEDHPLSLGMLGMHGTKAANEALEEADLLLAVGARFDDRVTGYSGFAPPAAIIHIDIDPAEIGKNYPVDVPIVGDAKAT 320 (550)
T ss_pred CCCCCccccccccccccHHHHHHhhcCCEEEEecCCCcccccchhhhCCcCCEEEEeCChHHhCCCCCCCeeEeccHHHH
Confidence
Q ss_pred ----------------------------------------------------------------------cccccCCCcc
Q psy14416 161 ----------------------------------------------------------------------SLLLNNLPRH 170 (1065)
Q Consensus 161 ----------------------------------------------------------------------~~l~~~~p~~ 170 (1065)
.++....|++
T Consensus 321 l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~l~~~~~~daiv~~d~G~~~~w~a~~~~~~~p~~ 400 (550)
T COG0028 321 LEALLEELKPERAAWLEELLEARAAYRDLALEELADDGIKPQYVIKVLRELLPDDAIVVTDVGQHQMWAARYFDFYRPRR 400 (550)
T ss_pred HHHHHHhhhhcchHHHHHHHHHHHhhhhhhhhccCCCccCHHHHHHHHHHhCCCCeEEEeCCcHHHHHHHHhcccCCCCc
Confidence 4455678999
Q ss_pred ccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeeccccchhhh
Q psy14416 171 RLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAW 250 (1065)
Q Consensus 171 ~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~~ 250 (1065)
++.++.+|+||+|+|+|+||+++ .|+|+||+++|||||+|++|||+|++||++|+++||+||++| ||.+ +|
T Consensus 401 ~~~s~~~GtMG~glPaAIGAkla----~P~r~Vv~i~GDG~F~m~~qEL~Ta~r~~lpv~ivv~nN~~~--g~v~---~~ 471 (550)
T COG0028 401 FLTSGGLGTMGFGLPAAIGAKLA----APDRKVVAIAGDGGFMMNGQELETAVRYGLPVKIVVLNNGGY--GMVR---QW 471 (550)
T ss_pred EEcCCCCccccchHHHHHHHHhh----CCCCcEEEEEcccHHhccHHHHHHHHHhCCCEEEEEEECCcc--ccch---HH
Confidence 99999999999999999999999 699999999999999999999999999999999999999976 9988 88
Q ss_pred hhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCC
Q psy14416 251 LDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKP 330 (1065)
Q Consensus 251 ~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkp 330 (1065)
|+..+..+.......+.+ ...++++ ||+.|-++...- |.. .|+--+..+++|
T Consensus 472 q~~~~~~~~~~~~~~~~~-f~klAea---------~G~~g~~v~~~~---------------el~---~al~~al~~~~p 523 (550)
T COG0028 472 QELFYGGRYSGTDLGNPD-FVKLAEA---------YGAKGIRVETPE---------------ELE---EALEEALASDGP 523 (550)
T ss_pred HHHhcCCCcceeecCCcc-HHHHHHH---------cCCeeEEeCCHH---------------HHH---HHHHHHHhCCCC
Confidence 888877653333334444 8888988 999997765321 111 122344557777
Q ss_pred eEEEEecccc
Q psy14416 331 GVCLVVSGPG 340 (1065)
Q Consensus 331 gv~~~tsGpG 340 (1065)
.++-+.--|-
T Consensus 524 ~lidv~id~~ 533 (550)
T COG0028 524 VLIDVVVDPE 533 (550)
T ss_pred EEEEEEecCc
Confidence 7766654443
No 62
>KOG1185|consensus
Probab=100.00 E-value=1e-46 Score=418.71 Aligned_cols=308 Identities=54% Similarity=0.833 Sum_probs=264.3
Q ss_pred CcccccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcc
Q psy14416 3 EDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPG 82 (1065)
Q Consensus 3 ~~~~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG 82 (1065)
++.++++++++.+++.|+++||+++||+.|.++.+|..+....||+||.+|||++|+|||++|+++|||||||++++|||
T Consensus 8 ~~~~~~~~g~~~vA~~Lk~~gVe~iFgiVGipV~el~~aaqalGIk~I~~RnEqaA~yAA~A~gyLt~kpGV~lVvsGPG 87 (571)
T KOG1185|consen 8 VDKASSRHGGELVAAVLKAQGVEYIFGIVGIPVIELAVAAQALGIKFIGTRNEQAAVYAASAYGYLTGKPGVLLVVSGPG 87 (571)
T ss_pred ccccccccHHHHHHHHHHHcCceEEEEEeccchHHHHHHHHHcCCeEeecccHHHHHHHHHHhhhhcCCCeEEEEecCCh
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc--
Q psy14416 83 LLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR-- 160 (1065)
Q Consensus 83 ~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP-- 160 (1065)
++|+++|+++|+.+++|||+|.|..+....++++|||+||.++++++||++.+++++++|+..+++|++.|++|+|||
T Consensus 88 l~hal~gv~NA~~n~wPll~IgGsa~~~~~~rGafQe~dQvel~rp~~K~~~r~~~~~~I~~~i~kA~r~a~~G~PG~~y 167 (571)
T KOG1185|consen 88 LTHALAGVANAQMNCWPLLLIGGSASTLLENRGAFQELDQVELFRPLCKFVARPTSVRDIPPTIRKAVRAAMSGRPGPVY 167 (571)
T ss_pred HHHHHHHhhhhhhccCcEEEEecccchhhhcccccccccHHhhhhhhhhhccCCCChhhccHHHHHHHHHHhcCCCCceE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 168 vD~P~d~v~~~~~~e~~~~~~~p~~~~p~P~i~~p~~s~i~~av~llk~AKrPLlvvGkgAa~~~ae~~l~~~Ve~~glP 247 (571)
T KOG1185|consen 168 VDLPADVVLPSKMVEKEIDVSEPQPPIPLPPIPGPPPSQIQKAVQLLKSAKRPLLVVGKGAAYAPAEDQLRKFVETTGLP 247 (571)
T ss_pred EecccceeeeecccccccccCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecccccCccHHHHHHHHHhcCCC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 248 flptpMgKGll~d~hPl~v~~aRS~ALk~ADvvll~GarlnwiLhfG~~Pk~~kd~KfIqvd~n~Eel~~n~~k~~v~i~ 327 (571)
T KOG1185|consen 248 FLPTPMGKGLLPDNHPLNVSSARSLALKKADVVLLAGARLNWILHFGLPPKWSKDVKFIQVDINPEELGNNFVKPDVAIQ 327 (571)
T ss_pred cccCcccccCCCCCCchhhhHHHHHHHhhCCEEEEecceeeEEEecCCCCccCCCceEEEEeCCHHHHhcccCCCCceee
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 328 gDig~~~~~L~e~l~~~~~~~~~s~~w~k~Lrek~~~ne~~~~~~~~~~~~pLN~~~~~~~vre~L~~~d~ilVsEGant 407 (571)
T KOG1185|consen 328 GDIGLFVLQLVEELQDQPWTWGPSTDWVKELREKDKQNEAAVEEKAAKKSTPLNYYQVLQTVRELLPNDDTILVSEGANT 407 (571)
T ss_pred ecHHHHHHHHHHHhcCCCcccCCchhHHHHHHHHHHhhHHHHHHHhhccCCCCcHHHHHHHHHHhcCCCCcEEEecCCcc
Confidence
Q ss_pred -----cccccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEc
Q psy14416 161 -----SLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVN 235 (1065)
Q Consensus 161 -----~~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~N 235 (1065)
.+++...|++++..++||+||-|+|+|++|+++ .|+++|+|+-||++|.|+.+|++|++||+||+++||+|
T Consensus 408 mdigr~~l~~~~Pr~rLDaGtfgTMGVG~Gfalaaa~~----~P~~~V~~veGDsaFGfSaME~ET~vR~~Lpvv~vV~N 483 (571)
T KOG1185|consen 408 MDIGRTLLPPRGPRRRLDAGTFGTMGVGLGFALAAALA----APDRKVVCVEGDSAFGFSAMELETFVRYKLPVVIVVGN 483 (571)
T ss_pred hhhhhhhccCCCcccccCCccccccccchhHHHHHHhh----CCCCeEEEEecCcccCcchhhHHHHHHhcCCeEEEEec
Confidence 335567899999999999999999999999999 59999999999999999999999999999999999998
Q ss_pred CCeeeeccccchhhhhh-hhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCc
Q psy14416 236 NNGIYGGFDEATYAWLD-IIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQ 314 (1065)
Q Consensus 236 N~gy~~g~~~~~~~~~~-l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~ 314 (1065)
|+|-| |+|.+.|.-.. .......+.......+..+.++++ ||--|-.+. +..|.
T Consensus 484 N~Giy-g~d~~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka---------~G~kG~~v~---------------t~~el 538 (571)
T KOG1185|consen 484 NNGIY-GLDDDGWKQISEQDPTLDLPPTALLANTRYDKVAKA---------FGGKGYFVS---------------TVEEL 538 (571)
T ss_pred CCccc-ccCcccHHHHhhcCcccCCCcccccccccHHHHHHH---------cCCCceeeC---------------CHHHH
Confidence 88866 99887776443 111222222223345677888887 666664332 22222
Q ss_pred hHHHHHHHHHHHhCCCeEEEEeccccc
Q psy14416 315 AACYAAQAIGYLTKKPGVCLVVSGPGL 341 (1065)
Q Consensus 315 ~A~~~A~g~ar~tgkpgv~~~tsGpG~ 341 (1065)
-+++- .--+.+.+|.++.+--+|..
T Consensus 539 ~~~l~--~a~q~~~~psvINVlI~p~~ 563 (571)
T KOG1185|consen 539 LAALQ--QACQDTDKPSVINVLIGPTA 563 (571)
T ss_pred HHHHH--HHHhcCCCCeEEEEEecccc
Confidence 22221 12234558888888777643
No 63
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=2.2e-46 Score=457.10 Aligned_cols=155 Identities=35% Similarity=0.498 Sum_probs=150.5
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchh
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 84 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~ 84 (1065)
|+++|++|+|++.|+++||++|||+||+++++|+++|.+ .+|++|.+|||++|+|||+||+|+|||||||++|+|||++
T Consensus 1 ~~~~~~a~~l~~~L~~~Gv~~vFgvpG~~~~~l~d~l~~~~~i~~i~~rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~ 80 (574)
T PRK07979 1 MEMLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLARATGEVGVVLVTSGPGAT 80 (574)
T ss_pred CCcccHHHHHHHHHHHcCCCEEEEccCcchHHHHHHHHhcCCceEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCccHh
Confidence 566899999999999999999999999999999999976 5799999999999999999999999999999999999999
Q ss_pred hhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 85 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 85 N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
|+++||++|+.+++|||+|+|+.+....+++.+|++|+..+++++|||+.++++++++++.+++|++.|.++++||
T Consensus 81 n~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GP 156 (574)
T PRK07979 81 NAITGIATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGP 156 (574)
T ss_pred hhHHHHHHHhhcCCCEEEEECCCChhccCCCCCceecHHHHhhcccceEEEeCCHHHHHHHHHHHHHHHccCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998888
No 64
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=3e-46 Score=455.43 Aligned_cols=155 Identities=34% Similarity=0.503 Sum_probs=149.4
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchh
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 84 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~ 84 (1065)
|+++|++|+|++.|+++||++|||+||+++++|+++|.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++
T Consensus 1 ~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~ 80 (572)
T PRK08979 1 MEMLSGASMIVRSLIDEGVKHIFGYPGGSVLDIYDALHEKSGIEHILVRHEQAAVHMADGYARATGKVGVVLVTSGPGAT 80 (572)
T ss_pred CCcccHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHhhcCCCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEECCCchHh
Confidence 456899999999999999999999999999999999975 4799999999999999999999999999999999999999
Q ss_pred hhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 85 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 85 N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
|+++|+++|+.+++|||+|+|++++...+++.+|++||..+++++|||+.++++++++++.+++|++.|++++|||
T Consensus 81 n~l~gia~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~~GP 156 (572)
T PRK08979 81 NTITGIATAYMDSIPMVVLSGQVPSNLIGNDAFQECDMIGISRPVVKHSFLVKDAEDIPEIIKKAFYIASTGRPGP 156 (572)
T ss_pred HHHHHHHHHhhcCCCEEEEecCCCccccCCCCCcccchhHHhhhceeEEEecCCHHHHHHHHHHHHHHHhCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988777
No 65
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=4.3e-46 Score=453.24 Aligned_cols=300 Identities=30% Similarity=0.420 Sum_probs=250.4
Q ss_pred CCCcccc-cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEe
Q psy14416 1 MSEDYDE-ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVV 78 (1065)
Q Consensus 1 ~~~~~~~-~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t 78 (1065)
|++..|+ +++++++|++.|+++||++|||+||+++++|+++|.+ .+|++|.+|||++|+|||+||+|+|||++||++|
T Consensus 1 ~~~~~~~~~~~~~~~i~~~L~~~Gv~~vFgipG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t 80 (566)
T PRK07282 1 MEKISLESPKSGSDLVLETLRDLGVDTIFGYPGGAVLPLYDAIYNFEGIRHILARHEQGALHEAEGYAKSTGKLGVAVVT 80 (566)
T ss_pred CCCccccccCcHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHhhcCCceEEEecCHHHHHHHHHHHHHHhCCCeEEEEC
Confidence 4555554 4699999999999999999999999999999999965 5799999999999999999999999999999999
Q ss_pred CCcchhhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCC
Q psy14416 79 SGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKP 158 (1065)
Q Consensus 79 ~GPG~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rp 158 (1065)
+|||++|+++||++|+.+++|||+|+|+.++...+++.+|++||.++++++|||++++++++++++.+++|++.|+++||
T Consensus 81 ~GPG~~n~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~A~~~~~ 160 (566)
T PRK07282 81 SGPGATNAITGIADAMSDSVPLLVFTGQVARAGIGKDAFQEADIVGITMPITKYNYQIRETADIPRIITEAVHIATTGRP 160 (566)
T ss_pred CCccHHHHHHHHHHHhhcCCCEEEEecccccccCCCCCccccChhchhcCCCceeEEcCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cc------------------------------------------------------------------------------
Q psy14416 159 GR------------------------------------------------------------------------------ 160 (1065)
Q Consensus 159 GP------------------------------------------------------------------------------ 160 (1065)
||
T Consensus 161 GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~l~~p 240 (566)
T PRK07282 161 GPVVIDLPKDVSALETDFIYDPEVNLPSYQPTLEPNDMQIKKILKQLSKAKKPVILAGGGINYAEAATELNAFAERYQIP 240 (566)
T ss_pred CeEEEeCChhhhhhhhcccccccccccCCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHhCCC
Confidence 88
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 241 v~tt~~gkg~ip~~hpl~~G~~G~~~~~~~~~~~~~aD~vl~lG~~l~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~ 320 (566)
T PRK07282 241 VVTTLLGQGTIATSHPLFLGMGGMHGSYAANIAMTEADFMINIGSRFDDRLTGNPKTFAKNAKVAHIDIDPAEIGKIIKT 320 (566)
T ss_pred EEeccccCCCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEECCCCCccccCChhhcCCCCeEEEEECCHHHhCCCCCC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 321 ~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~ivv~d~G~~~~~~~ 400 (566)
T PRK07282 321 DIPVVGDAKKALQMLLAEPTVHNNTEKWIEKVTKDKNRVRSYDKKERVVQPQAVIERIGELTNGDAIVVTDVGQHQMWAA 400 (566)
T ss_pred CeEEecCHHHHHHHHHHhhcccCChHHHHHHHHHHHHhchhccCcCCCcCHHHHHHHHHhhcCCCeEEEECCcHHHHHHH
Confidence
Q ss_pred cccccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeee
Q psy14416 161 SLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIY 240 (1065)
Q Consensus 161 ~~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~ 240 (1065)
.+++...|.+++.++.||+|||++|+|+||+++ .|+|+||+++|||||||+.|||+|++||++|+++||+||++|
T Consensus 401 ~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~lA----~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~i~~vV~NN~~y- 475 (566)
T PRK07282 401 QYYPYQNERQLVTSGGLGTMGFGIPAAIGAKIA----NPDKEVILFVGDGGFQMTNQELAILNIYKVPIKVVMLNNHSL- 475 (566)
T ss_pred HhcccCCCCcEecCCccccccchhhHhheehee----cCCCcEEEEEcchhhhccHHHHHHHHHhCCCeEEEEEeCCCc-
Confidence 113334566677777899999999999999999 799999999999999999999999999999999999999988
Q ss_pred eccccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHH
Q psy14416 241 GGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAA 320 (1065)
Q Consensus 241 ~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A 320 (1065)
++.+ ++|+..+.................+++. ||+.|.++.. .+|..+++.+
T Consensus 476 -~~i~---~~q~~~~~~~~~~~~~~~~~d~~~lA~a---------~G~~~~~v~~---------------~~el~~al~~ 527 (566)
T PRK07282 476 -GMVR---QWQESFYEGRTSESVFDTLPDFQLMAQA---------YGIKHYKFDN---------------PETLAQDLEV 527 (566)
T ss_pred -hHHH---HHHHHHhCCCcccccCCCCCCHHHHHHH---------CCCEEEEECC---------------HHHHHHHHHH
Confidence 7655 5555443322211111122346677776 6665543322 2344444432
Q ss_pred HHHHHHhCCCeEEEEec
Q psy14416 321 QAIGYLTKKPGVCLVVS 337 (1065)
Q Consensus 321 ~g~ar~tgkpgv~~~ts 337 (1065)
..+++|.++-+..
T Consensus 528 ----~~~~~p~lIeV~v 540 (566)
T PRK07282 528 ----ITEDVPMLIEVDI 540 (566)
T ss_pred ----hcCCCCEEEEEEe
Confidence 1357888877653
No 66
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=7.5e-46 Score=452.38 Aligned_cols=155 Identities=33% Similarity=0.476 Sum_probs=150.1
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchh
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 84 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~ 84 (1065)
|+.|+++|+|++.|+++||++|||+||+++++|+++|.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++
T Consensus 1 ~~~~~~a~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~ 80 (574)
T PRK06466 1 MELLSGAEMLVRALRDEGVEYIYGYPGGAVLHIYDALFKQDKVEHILVRHEQAATHMADGYARATGKTGVVLVTSGPGAT 80 (574)
T ss_pred CCcccHHHHHHHHHHHcCCCEEEECCCcchhHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCccHH
Confidence 566799999999999999999999999999999999965 5799999999999999999999999999999999999999
Q ss_pred hhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 85 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 85 N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
|+++||++|+.+++|||+|+|+.++...+++.+|++||..+++++|||++++.+++++++.+++|++.|+++||||
T Consensus 81 N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~itk~s~~v~~~~~~~~~~~rA~~~A~~~~~GP 156 (574)
T PRK06466 81 NAITGIATAYMDSIPMVVLSGQVPSTLIGEDAFQETDMVGISRPIVKHSFMVKHASEIPEIIKKAFYIAQSGRPGP 156 (574)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCCccccCCCcccccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988887
No 67
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=100.00 E-value=4.2e-46 Score=454.63 Aligned_cols=153 Identities=25% Similarity=0.366 Sum_probs=148.8
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhc-CCcEEEEEeCCcchhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLT-KKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~t-g~~gv~~~t~GPG~~N 85 (1065)
+|+++|+|++.|+++||++|||+||+++++|+++|.+ .+|++|.+|||++|+|||+||+|+| ||+|||++|+|||++|
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~V~~rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N 81 (588)
T TIGR01504 2 RMRAVDAAVYVLEKEGITTAFGVPGAAINPFYSALKAHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD 81 (588)
T ss_pred CccHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHhhcCCCcEEeeCCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHH
Confidence 5789999999999999999999999999999999965 4799999999999999999999999 9999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+++||++|+.+++|||+|+|+.++...+++.+|++||.++++++|||++++.+++++++.+++|++.|.++||||
T Consensus 82 ~~~gla~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~D~~~~~~~vtk~~~~v~~~~~i~~~i~~A~~~A~~~~~GP 156 (588)
T TIGR01504 82 MITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIAAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGP 156 (588)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCCcccccCHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHccCCCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
No 68
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=100.00 E-value=1.9e-45 Score=447.61 Aligned_cols=156 Identities=26% Similarity=0.426 Sum_probs=151.0
Q ss_pred ccccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchh
Q psy14416 5 YDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 84 (1065)
Q Consensus 5 ~~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~ 84 (1065)
+..+|+++++|++.|+++||++|||+||+++++|+++|.+.+|++|.||||++|+|||+||+|+||||+||++|+|||++
T Consensus 4 ~~~~~~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~i~~v~~~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~ 83 (561)
T PRK06048 4 STEKMTGARAIIKCLEKEGVEVIFGYPGGAIIPVYDELYDSDLRHILVRHEQAAAHAADGYARATGKVGVCVATSGPGAT 83 (561)
T ss_pred ccccccHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhhCCCeEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHH
Confidence 33458999999999999999999999999999999999878899999999999999999999999999999999999999
Q ss_pred hhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 85 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 85 N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
|+++||++|+.+++|||+|+|+.+....+++.+|++||..+++++|||++++++++++++.+++|++.|++++|||
T Consensus 84 n~~~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~s~~v~~~~~i~~~i~~A~~~A~~~~~GP 159 (561)
T PRK06048 84 NLVTGIATAYMDSVPIVALTGQVPRSMIGNDAFQEADITGITMPITKHNYLVQDAKDLPRIIKEAFHIASTGRPGP 159 (561)
T ss_pred HHHHHHHHHhhcCCCEEEEeccCCccccCCCCccccchhhhccCcceEEEEeCCHHHHHHHHHHHHHHHhcCCCCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988888
No 69
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=100.00 E-value=1e-45 Score=449.23 Aligned_cols=268 Identities=29% Similarity=0.468 Sum_probs=236.0
Q ss_pred ccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhH
Q psy14416 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 88 (1065)
Q Consensus 9 ~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~ 88 (1065)
||++++|++.|+++||++|||+||+++++|+++|.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~v~~~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~~ 80 (548)
T PRK08978 1 MNGAQWVVHALRAQGVDTVFGYPGGAIMPVYDALYDGGVEHLLCRHEQGAAMAAIGYARATGKVGVCIATSGPGATNLIT 80 (548)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHH
Confidence 68999999999999999999999999999999998778999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc--------
Q psy14416 89 GMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR-------- 160 (1065)
Q Consensus 89 gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP-------- 160 (1065)
|+++|+.+++|||+|+|+.++...+++.+|++||..+++++|||++++++++++++.+++|++.|.+++|||
T Consensus 81 ~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (548)
T PRK08978 81 GLADALLDSVPVVAITGQVSSPLIGTDAFQEIDVLGLSLACTKHSFLVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKD 160 (548)
T ss_pred HHHHHhhcCCCEEEEecCCCccccCCCCCcccchhccccCceeeEEEECCHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 161 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~~~~ 240 (548)
T PRK08978 161 IQLAEGELEPHLTTVENEPAFPAAELEQARALLAQAKKPVLYVGGGVGMAGAVPALREFLAATGMPAVATLKGLGAVEAD 240 (548)
T ss_pred hhhccccccccccccCCCCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHHCCCEEEccccCCCCCCC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 241 hp~~~G~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~ 320 (548)
T PRK08978 241 HPYYLGMLGMHGTKAANLAVQECDLLIAVGARFDDRVTGKLNTFAPHAKVIHLDIDPAEINKLRQAHVALQGDLNALLPA 320 (548)
T ss_pred CccccCCCCCCCCHHHHHHHHhCCEEEEEcCCCCccccCCccccCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHH
Confidence
Q ss_pred ---------------------------------------------------------------cccccCCCccccccccc
Q psy14416 161 ---------------------------------------------------------------SLLLNNLPRHRLDAGTF 177 (1065)
Q Consensus 161 ---------------------------------------------------------------~~l~~~~p~~~l~~~~~ 177 (1065)
.+++...|++++.++++
T Consensus 321 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~ 400 (548)
T PRK08978 321 LQQPLNIDAWRQHCAQLRAEHAWRYDHPGEAIYAPALLKQLSDRKPADTVVTTDVGQHQMWVAQHMRFTRPENFITSSGL 400 (548)
T ss_pred HHHhccchHHHHHHHHHHHhCchhccCCCCCcCHHHHHHHHHHhCCCCcEEEecCcHHHHHHHHhcccCCCCeEEeCCch
Confidence 11223456777777788
Q ss_pred cCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeeccccchhhhhhhhhcc
Q psy14416 178 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKS 257 (1065)
Q Consensus 178 gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~~~~l~~~~ 257 (1065)
|+|||++|+|+|++++ .|+|+||+++|||||+|+.|||+|++|+++|+++||+||++| |+.+ ++|+..+..
T Consensus 401 g~mG~glpaAiGa~la----~p~~~vv~i~GDG~f~~~~~eL~ta~~~~l~v~ivV~NN~~~--~~~~---~~~~~~~~~ 471 (548)
T PRK08978 401 GTMGFGLPAAIGAQVA----RPDDTVICVSGDGSFMMNVQELGTIKRKQLPVKIVLLDNQRL--GMVR---QWQQLFFDE 471 (548)
T ss_pred hhhhchHHHHHHHHHh----CCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEEEEeCCcc--HHHH---HHHHHHhCC
Confidence 9999999999999999 799999999999999999999999999999999999999988 6655 455443332
Q ss_pred CCCcccccCccHHHHHHHHHHhcCceEEEeecCCchh
Q psy14416 258 NMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVI 294 (1065)
Q Consensus 258 g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~ 294 (1065)
+..............++++ ||++|.++.
T Consensus 472 ~~~~~~~~~~~d~~~la~a---------~G~~~~~v~ 499 (548)
T PRK08978 472 RYSETDLSDNPDFVMLASA---------FGIPGQTIT 499 (548)
T ss_pred cceecCCCCCCCHHHHHHH---------CCCeEEEEC
Confidence 2211111122456778887 777775543
No 70
>PRK12474 hypothetical protein; Provisional
Probab=100.00 E-value=2.3e-45 Score=442.93 Aligned_cols=154 Identities=21% Similarity=0.289 Sum_probs=149.1
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
.+||++|+|++.|+++||++|||+||+++++|++++.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|
T Consensus 3 ~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgYaR~tg~~gv~~~t~GpG~~N 82 (518)
T PRK12474 3 QTMNGADSVVDTLLNCGVEVCFANPGTSEMHFVAALDRVPRMRPVLCLFEGVVTGAADGYGRIAGKPAVTLLHLGPGLAN 82 (518)
T ss_pred cCccHHHHHHHHHHHCCCCEEEECCCcchHHHHHHhhccCCceEEEecchHHHHHHHHHHHHHhCCCEEEEEccchhHhH
Confidence 35799999999999999999999999999999999965 47999999999999999999999999999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+++||++|+.+++|||+|+|+.++...+.+.+|+.|+.++++++|||++++++++++++.+++|++.|.++||||
T Consensus 83 ~~~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~~GP 157 (518)
T PRK12474 83 GLANLHNARRAASPIVNIVGDHAVEHLQYDAPLTSDIDGFARPVSRWVHRSASAGAVDSDVARAVQAAQSAPGGI 157 (518)
T ss_pred hHHHHHHHhhcCCCEEEEeccCchhhcCCCCccccCHHHhhhcccceeeecCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997
No 71
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=1.5e-45 Score=450.45 Aligned_cols=154 Identities=32% Similarity=0.497 Sum_probs=149.0
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
++||++|+|++.|+++||++|||+||+++++|+++|.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|
T Consensus 9 ~~~t~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~I~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N 88 (595)
T PRK09107 9 RQMTGAEMVVQALKDQGVEHIFGYPGGAVLPIYDEIFQQDDIQHILVRHEQGAGHAAEGYARSTGKPGVVLVTSGPGATN 88 (595)
T ss_pred hhhhHHHHHHHHHHHCCCCEEEEccCcchHHHHHHHhhcCCCeEEEECChHHHHHHHHHHHHHhCCCEEEEECCCccHhH
Confidence 45799999999999999999999999999999999965 47999999999999999999999999999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+++||++|+.+++|||+|+|+.++...+++.+|++||..+++++|||++++++++++++.+++|++.|+++||||
T Consensus 89 ~l~gia~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~i~~~l~~A~~~A~s~~~GP 163 (595)
T PRK09107 89 AVTPLQDALMDSIPLVCITGQVPTHLIGSDAFQECDTVGITRPCTKHNWLVKDVNDLARVIHEAFHVATSGRPGP 163 (595)
T ss_pred HHHHHHHHhhcCCCEEEEEcCCChhhcCCCCCcccchhhhhhhheEEEEEeCCHHHHHHHHHHHHHHhcCCCCce
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988777
No 72
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=1.8e-45 Score=449.55 Aligned_cols=154 Identities=31% Similarity=0.506 Sum_probs=150.0
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
..||++++|++.|+++||++|||+||+++.+|+++|.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|
T Consensus 19 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~AdgYar~tg~~gv~~~t~GpG~~N 98 (587)
T PRK06965 19 ADSIGAEILMKALAAEGVEFIWGYPGGAVLYIYDELYKQDKIQHVLVRHEQAAVHAADGYARATGKVGVALVTSGPGVTN 98 (587)
T ss_pred hhccHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCeEEEECCCccHHH
Confidence 56899999999999999999999999999999999976 47999999999999999999999999999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+++||++|+.+++|||+|+|+.+....+++.+|++||..+++++|||+.++++++++++.+++|++.|+++++||
T Consensus 99 ~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~~~GP 173 (587)
T PRK06965 99 AVTGIATAYMDSIPMVVISGQVPTAAIGQDAFQECDTVGITRPIVKHNFLVKDVRDLAETVKKAFYIARTGRPGP 173 (587)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCCCcccccHHHHhcCCcceeEEeCCHHHHHHHHHHHHHHHhcCCCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998888
No 73
>PRK07586 hypothetical protein; Validated
Probab=100.00 E-value=2.4e-45 Score=442.93 Aligned_cols=152 Identities=20% Similarity=0.237 Sum_probs=148.5
Q ss_pred ccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhh
Q psy14416 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 87 (1065)
Q Consensus 9 ~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l 87 (1065)
||++|+|++.|+++||++|||+||+++++|++++.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFG~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~ 80 (514)
T PRK07586 1 MNGAESLVRTLVDGGVDVCFANPGTSEMHFVAALDRVPGMRCVLGLFEGVATGAADGYARMAGKPAATLLHLGPGLANGL 80 (514)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCCchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHH
Confidence 689999999999999999999999999999999976 4799999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 88 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 88 ~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+||++|+.+++|||+|+|+.++...+++.+|+.||.++++++|||++++++++++++.+++|++.|+++||||
T Consensus 81 ~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~~~GP 153 (514)
T PRK07586 81 ANLHNARRARTPIVNIVGDHATYHRKYDAPLTSDIEALARPVSGWVRRSESAADVAADAAAAVAAARGAPGQV 153 (514)
T ss_pred HHHHHHHhcCCCEEEEecCCchhccCCCcccccchhhhhccccceeeecCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
No 74
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=4.8e-45 Score=443.85 Aligned_cols=267 Identities=30% Similarity=0.483 Sum_probs=235.1
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 87 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l 87 (1065)
.||++|+|++.|+++||++|||+||+++++|+++|.+.+|++|.+|||++|+|||+||+|+|||||||++|+|||++|++
T Consensus 14 ~~~~a~~l~~~L~~~GV~~vFGipG~~~~~l~dal~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~~ 93 (570)
T PRK06725 14 EVTGAGHVIQCLKKLGVTTVFGYPGGAILPVYDALYESGLKHILTRHEQAAIHAAEGYARASGKVGVVFATSGPGATNLV 93 (570)
T ss_pred cccHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHhcCCcEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHH
Confidence 58999999999999999999999999999999999877899999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc-------
Q psy14416 88 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR------- 160 (1065)
Q Consensus 88 ~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP------- 160 (1065)
+||++|+.+++|||+|+|+.++...+++.+|++||..+++++|||++++.+++++++.+++|++.|+++||||
T Consensus 94 ~gla~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 173 (570)
T PRK06725 94 TGLADAYMDSIPLVVITGQVATPLIGKDGFQEADVVGITVPVTKHNYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPK 173 (570)
T ss_pred HHHHHHhhcCcCEEEEecCCCcccccCCCCcccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 174 Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~rPvIl~G~g~~~~~a~~~l~~lae~~~~PV~tt~~~kg 253 (570)
T PRK06725 174 DVQNEKVTSFYNEVVEIPGYKPEPRPDSMKLREVAKAISKAKRPLLYIGGGVIHSGGSEELIEFARENRIPVVSTLMGLG 253 (570)
T ss_pred chhhcccccccCcccccccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCccccchHHHHHHHHHHhCCCEEECCccCc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 254 ~~p~~hp~~~G~~G~~~~~~~~~~l~~aDlil~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~gD~~ 333 (570)
T PRK06725 254 AYPPGDPLFLGMLGMHGTYAANMAVTECDLLLALGVRFDDRVTGKLELFSPHSKKVHIDIDPSEFHKNVAVEYPVVGDVK 333 (570)
T ss_pred CCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEeCCCCCccccCcccccCCCCeEEEEeCCHHHhCCCCCCCeEEecCHH
Confidence
Q ss_pred -----------------------------------------------------------------------cccccCCCc
Q psy14416 161 -----------------------------------------------------------------------SLLLNNLPR 169 (1065)
Q Consensus 161 -----------------------------------------------------------------------~~l~~~~p~ 169 (1065)
.+++...|.
T Consensus 334 ~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~d~iiv~d~g~~~~~~~~~~~~~~p~ 413 (570)
T PRK06725 334 KALHMLLHMSIHTQTDEWLQKVKTWKEEYPLSYKQKESELKPQHVINLVSELTNGEAIVTTEVGQHQMWAAHFYKAKNPR 413 (570)
T ss_pred HHHHHHHHhccccCcHHHHHHHHHHHHhChhhhcccCCCcCHHHHHHHHHhhCCCCcEEEeCCcHHHHHHHHhccccCCC
Confidence 112234566
Q ss_pred cccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeeccccchhh
Q psy14416 170 HRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYA 249 (1065)
Q Consensus 170 ~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~ 249 (1065)
+++.++.+|+|||++|+|+|++++ .|+|+||+++|||||+|+.|||+|++||++|+++||+||++| ++.+ +
T Consensus 414 ~~~~~~~~gsmG~~lp~aiGa~lA----~p~~~vv~i~GDG~f~~~~~el~Ta~~~~lpi~~vV~NN~~~--~~~~---~ 484 (570)
T PRK06725 414 TFLTSGGLGTMGFGFPAAIGAQLA----KEEELVICIAGDASFQMNIQELQTIAENNIPVKVFIINNKFL--GMVR---Q 484 (570)
T ss_pred eEEccCCcccccchhhHHHhhHhh----cCCCeEEEEEecchhhccHHHHHHHHHhCCCeEEEEEECCcc--HHHH---H
Confidence 677777789999999999999999 799999999999999999999999999999999999999977 6654 5
Q ss_pred hhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCch
Q psy14416 250 WLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPV 293 (1065)
Q Consensus 250 ~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~ 293 (1065)
+|...+...... ..........++++ ||++|.++
T Consensus 485 ~q~~~~~~~~~~-~~~~~~d~~~~a~a---------~G~~~~~v 518 (570)
T PRK06725 485 WQEMFYENRLSE-SKIGSPDFVKVAEA---------YGVKGLRA 518 (570)
T ss_pred HHHHhcCCcccc-CcCCCCCHHHHHHH---------CCCeEEEe
Confidence 554443322111 11112456677877 77777554
No 75
>PRK05858 hypothetical protein; Provisional
Probab=100.00 E-value=5.2e-45 Score=442.11 Aligned_cols=269 Identities=33% Similarity=0.517 Sum_probs=235.7
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 86 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~ 86 (1065)
.+|+++|+|++.|+++||++|||+||+++.+|++++.+.+|++|.||||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 3 ~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~i~~i~~rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~n~ 82 (542)
T PRK05858 3 QTGHAGRLAARRLKAHGVDTMFTLSGGHLFPLYDGAREEGIRLIDVRHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVTNG 82 (542)
T ss_pred ccCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCCEEeeccHHHHHHHHHHHHHhcCCCeEEEEcCCchHHHH
Confidence 46899999999999999999999999999999999987789999999999999999999999999999999999999999
Q ss_pred hHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc------
Q psy14416 87 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR------ 160 (1065)
Q Consensus 87 l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP------ 160 (1065)
++||++|+.+++|||+|+|+.+....+++.+|++||..++++++||++++++++++++.+++|++.|+++|+||
T Consensus 83 ~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 162 (542)
T PRK05858 83 MSAMAAAQFNQSPLVVLGGRAPALRWGMGSLQEIDHVPFVAPVTKFAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFP 162 (542)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcccCCCCCCcccchhhhhhhhhceEEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 163 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~tt~~~kg 242 (542)
T PRK05858 163 MDHAFSMADDDGRPGALTELPAGPTPDPDALARAAGLLAEAQRPVIMAGTDVWWGHAEAALLRLAEELGIPVLMNGMGRG 242 (542)
T ss_pred hhhhhccccccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCccccChHHHHHHHHHHhCCCEEEcCCcCC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 243 ~~~~~hpl~~~~~~~~~l~~aD~vl~vG~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~ 322 (542)
T PRK05858 243 VVPADHPLAFSRARGKALGEADVVLVVGVPMDFRLGFGVFGGTAQLVHVDDAPPQRAHHRPVAAGLYGDLSAILSALAGA 322 (542)
T ss_pred CCCCCCchhhhHHHHHHHHhCCEEEEECCCCcccccccccCCCCEEEEECCCHHHhcCCCCCceEEeCCHHHHHHHHHHh
Confidence
Q ss_pred -------------------------------------------------------------------cccccCCCccccc
Q psy14416 161 -------------------------------------------------------------------SLLLNNLPRHRLD 173 (1065)
Q Consensus 161 -------------------------------------------------------------------~~l~~~~p~~~l~ 173 (1065)
.+++...|++++.
T Consensus 323 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~p~~~~~ 402 (542)
T PRK05858 323 GGDRTDHQGWIEELRTAETAARARDAAELADDRDPIHPMRVYGELAPLLDRDAIVIGDGGDFVSYAGRYIDPYRPGCWLD 402 (542)
T ss_pred cccccCcHHHHHHHHHHHHhhhhhhhhhccCCCCCcCHHHHHHHHHHhcCCCeEEEECCcHHHHHHHHHccccCCCCEEe
Confidence 1122344566666
Q ss_pred cccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeeccccchhhhhhh
Q psy14416 174 AGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDI 253 (1065)
Q Consensus 174 ~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~~~~l 253 (1065)
++.+|+|||++|+|+|++++ .|+|+||+++|||||||+.|||+|++||++|+++||+||++| |+.+ ..++.
T Consensus 403 ~~~~gsmG~~lp~aiGa~la----~p~r~vv~i~GDG~f~~~~~eL~Ta~~~~lpi~ivV~NN~~y--~~~~---~~~~~ 473 (542)
T PRK05858 403 PGPFGCLGTGPGYALAARLA----RPSRQVVLLQGDGAFGFSLMDVDTLVRHNLPVVSVIGNNGIW--GLEK---HPMEA 473 (542)
T ss_pred CCCccccccchhHHHHHHHh----CCCCcEEEEEcCchhcCcHHHHHHHHHcCCCEEEEEEeCCch--hhHH---HHHHH
Confidence 66789999999999999999 699999999999999999999999999999999999999987 7654 44444
Q ss_pred hhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchh
Q psy14416 254 IKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVI 294 (1065)
Q Consensus 254 ~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~ 294 (1065)
.+...... ....-.....++++ ||+.|.++.
T Consensus 474 ~~~~~~~~-~~~~~~d~~~lA~a---------~G~~~~~v~ 504 (542)
T PRK05858 474 LYGYDVAA-DLRPGTRYDEVVRA---------LGGHGELVT 504 (542)
T ss_pred hcCCcccc-ccCCCCCHHHHHHH---------CCCeEEEeC
Confidence 33222111 11122466778887 777775553
No 76
>PRK11269 glyoxylate carboligase; Provisional
Probab=100.00 E-value=2.6e-45 Score=448.86 Aligned_cols=155 Identities=24% Similarity=0.359 Sum_probs=150.6
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhc-CCcEEEEEeCCcch
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLT-KKPGVCLVVSGPGL 83 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~t-g~~gv~~~t~GPG~ 83 (1065)
|.+||++++|++.|+++||++|||+||+++++|+++|.+. +|++|.||||++|+|||+||+|+| |||+||++|+|||+
T Consensus 1 ~~~~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~ 80 (591)
T PRK11269 1 MAKMRAVDAAVLVLEKEGVTTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAG 80 (591)
T ss_pred CCcccHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhhcCCCcEEeeCCHHHHHHHHHHHHHHcCCCcEEEEECCCCcH
Confidence 4568999999999999999999999999999999999754 799999999999999999999999 99999999999999
Q ss_pred hhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 84 LHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 84 ~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+|+++|+++|+.+++|||+|+|++++...+++.+|++||.++++++|||+.++++++++++.+++|++.|+++||||
T Consensus 81 ~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~itk~s~~v~~~~~~~~~i~~A~~~A~~~~~GP 157 (591)
T PRK11269 81 TDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIESIAKPVTKWAVTVREPALVPRVFQQAFHLMRSGRPGP 157 (591)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCCCccccCCCcccccChhhHhhcceeEEEEcCCHHHHHHHHHHHHHHHhhCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
No 77
>PRK08322 acetolactate synthase; Reviewed
Probab=100.00 E-value=4.9e-45 Score=443.55 Aligned_cols=152 Identities=33% Similarity=0.511 Sum_probs=149.3
Q ss_pred ccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhH
Q psy14416 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 88 (1065)
Q Consensus 9 ~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~ 88 (1065)
|+++++|++.|+++||++|||+||+++.+|+++|.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus 1 m~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~~ 80 (547)
T PRK08322 1 MKAADLFVKCLENEGVEYIFGIPGEENLDLLEALRDSSIKLILTRHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLVT 80 (547)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCcEEEeccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHHH
Confidence 68999999999999999999999999999999998778999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 89 GMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 89 gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
|+++|+.+++|||+|+|+++....+++.+|++||.++++++|||++++++++++++.+++|++.|+++||||
T Consensus 81 ~i~~A~~~~~Pll~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GP 152 (547)
T PRK08322 81 GVAYAQLGGMPMVAITGQKPIKRSKQGSFQIVDVVAMMAPLTKWTRQIVSPDNIPEVVREAFRLAEEERPGA 152 (547)
T ss_pred HHHHHhhcCCCEEEEeccccccccCCCccccccHHHHhhhheeEEEEeCCHHHHHHHHHHHHHHHccCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
No 78
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=7.1e-45 Score=443.55 Aligned_cols=156 Identities=30% Similarity=0.460 Sum_probs=151.3
Q ss_pred ccccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchh
Q psy14416 5 YDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 84 (1065)
Q Consensus 5 ~~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~ 84 (1065)
.++++|++|+|++.|+++||++|||+||+++++|++++.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++
T Consensus 12 ~~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~~ 91 (571)
T PRK07710 12 EEKLMTGAQMLIEALEKEGVEVIFGYPGGAVLPLYDALYDCGIPHILTRHEQGAIHAAEGYARISGKPGVVIATSGPGAT 91 (571)
T ss_pred ccccchHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCcEEEeCCHHHHHHHHHHHHHHhCCCeEEEECCCccHH
Confidence 35568999999999999999999999999999999999878899999999999999999999999999999999999999
Q ss_pred hhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 85 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 85 N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
|+++||++|+.+++|||+|+|++++...+++.+|++||..+++++|||++++.+++++++.+++|++.|+++||||
T Consensus 92 N~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GP 167 (571)
T PRK07710 92 NVVTGLADAMIDSLPLVVFTGQVATSVIGSDAFQEADIMGITMPVTKHNYQVRKASDLPRIIKEAFHIATTGRPGP 167 (571)
T ss_pred HHHHHHHHHhhcCCCEEEEeccCCccccCCCCccccchhhhhhcccceEEecCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988887
No 79
>PLN02470 acetolactate synthase
Probab=100.00 E-value=7.8e-45 Score=444.16 Aligned_cols=155 Identities=29% Similarity=0.472 Sum_probs=149.6
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchh
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 84 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~ 84 (1065)
...|+++++|++.|+++||++|||+||+++++|+++|.+. +|++|.+|||++|+|||+||+|+|||++||++|+|||++
T Consensus 10 ~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~ 89 (585)
T PLN02470 10 DEPRKGADILVEALEREGVDTVFAYPGGASMEIHQALTRSNCIRNVLCRHEQGEVFAAEGYAKASGKVGVCIATSGPGAT 89 (585)
T ss_pred CccccHHHHHHHHHHHcCCCEEEEcCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHH
Confidence 4568999999999999999999999999999999999654 799999999999999999999999999999999999999
Q ss_pred hhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 85 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 85 N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
|+++||++|+.+++|||+|+|+.++...+++.+|++||..++++++||++++++++++++.+++|++.|.++||||
T Consensus 90 N~l~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GP 165 (585)
T PLN02470 90 NLVTGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRVIREAFFLASSGRPGP 165 (585)
T ss_pred HHHHHHHHHHhcCCcEEEEecCCChhhcCCCcCcccchhhhhhhheEEEEEcCCHHHHHHHHHHHHHHhcCCCCCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988887
No 80
>PRK08617 acetolactate synthase; Reviewed
Probab=100.00 E-value=5.3e-45 Score=443.42 Aligned_cols=154 Identities=34% Similarity=0.497 Sum_probs=150.3
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 86 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~ 86 (1065)
.+||++++|++.|+++||++|||+||+++++|+++|.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 3 ~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~vt~GpG~~N~ 82 (552)
T PRK08617 3 KKKYGADLVVDSLINQGVKYVFGIPGAKIDRVFDALEDSGPELIVTRHEQNAAFMAAAIGRLTGKPGVVLVTSGPGVSNL 82 (552)
T ss_pred ccccHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhhCCCCEEEeccHHHHHHHHHhHhhhcCCCEEEEECCCCcHhHh
Confidence 34799999999999999999999999999999999987789999999999999999999999999999999999999999
Q ss_pred hHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 87 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 87 l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
++|+++|+.+++|||+|+|++++...+++.+|++||.++++++|||++++++++++++.+++|++.|+++||||
T Consensus 83 l~gl~~A~~~~~PvlvisG~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GP 156 (552)
T PRK08617 83 ATGLVTATAEGDPVVAIGGQVKRADRLKRTHQSMDNVALFRPITKYSAEVQDPDNLSEVLANAFRAAESGRPGA 156 (552)
T ss_pred HHHHHHHhhcCCCEEEEecCCcccccCCCCccccchhhhhhhhcceEEEeCCHHHHHHHHHHHHHHHccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998
No 81
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=7.6e-45 Score=443.84 Aligned_cols=152 Identities=28% Similarity=0.450 Sum_probs=147.1
Q ss_pred ccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh----CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchh
Q psy14416 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 84 (1065)
Q Consensus 9 ~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~----~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~ 84 (1065)
++++|+|++.|+++||++|||+||+++++|+++|.+ .+|++|.+|||++|+|||+||+|+|||++||++|+|||++
T Consensus 2 ~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~ 81 (572)
T PRK06456 2 PTGARILVDSLKREGVKVIFGIPGLSNMQIYDAFVEDLANGELRHVLMRHEQAAAHAADGYARASGVPGVCTATSGPGTT 81 (572)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhhccCCCCeEEEeCcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHH
Confidence 589999999999999999999999999999999963 3699999999999999999999999999999999999999
Q ss_pred hhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 85 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 85 N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
|+++|+++|+.+++|||+|+|++++...+++.+|++||.++++++|||+.++++++++++.+++|++.|++++|||
T Consensus 82 N~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~i~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GP 157 (572)
T PRK06456 82 NLVTGLITAYWDSSPVIAITGQVPRSVMGKMAFQEADAMGVFENVTKYVIGIKRIDEIPQWIKNAFYIATTGRPGP 157 (572)
T ss_pred HHHHHHHHHHhhCCCEEEEecCCCccccCCCCccccchhhhhhccceeEEEeCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988888
No 82
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=100.00 E-value=1.1e-44 Score=444.93 Aligned_cols=157 Identities=27% Similarity=0.389 Sum_probs=150.7
Q ss_pred cccccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh----CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeC
Q psy14416 4 DYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVS 79 (1065)
Q Consensus 4 ~~~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~----~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~ 79 (1065)
..+++|+++++|++.|+++||++|||+||+.+.+++++|.+ .+|++|.+|||++|+|||+||+|+|||||||++|+
T Consensus 14 ~~~~~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~~~i~~i~~rhE~~Aa~aA~gyar~tgk~gv~~~t~ 93 (616)
T PRK07418 14 VTPQRATGAYALMDSLKRHGVKHIFGYPGGAILPIYDELYKAEAEGWLKHILVRHEQGAAHAADGYARATGKVGVCFGTS 93 (616)
T ss_pred cCCccccHHHHHHHHHHHcCCCEEEeCcCcchHHHHHHHHhcccCCCceEEEeccHHHHHHHHHHHHHHhCCCeEEEECC
Confidence 34577999999999999999999999999999999999964 26999999999999999999999999999999999
Q ss_pred CcchhhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCc
Q psy14416 80 GPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159 (1065)
Q Consensus 80 GPG~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpG 159 (1065)
|||++|+++||++|+.+++|||+|+|+.++...+++.||++||..++++++||++++++++++++.+++|++.|.++|||
T Consensus 94 GPG~~n~l~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~~Qe~d~~~~~~~vtk~~~~v~~~~~i~~~l~~A~~~A~~~~~G 173 (616)
T PRK07418 94 GPGATNLVTGIATAQMDSVPMVVITGQVPRPAIGTDAFQETDIFGITLPIVKHSYVVRDPSDMARIVAEAFHIASSGRPG 173 (616)
T ss_pred CccHHHHHHHHHHHHhcCCCEEEEecCCCccccCCCCcccccHHHHhhhcceeEEEeCCHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred c
Q psy14416 160 R 160 (1065)
Q Consensus 160 P 160 (1065)
|
T Consensus 174 P 174 (616)
T PRK07418 174 P 174 (616)
T ss_pred c
Confidence 7
No 83
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=1.4e-44 Score=440.47 Aligned_cols=157 Identities=30% Similarity=0.455 Sum_probs=151.1
Q ss_pred cccccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcc
Q psy14416 4 DYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPG 82 (1065)
Q Consensus 4 ~~~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG 82 (1065)
..|+++|++++|++.|+++||++|||+||+++++|+++|.+. +|++|.+|||++|+|||+||+|+||||+||++|+|||
T Consensus 8 ~~~~~~~~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG 87 (564)
T PRK08155 8 STRKRFTGAELIVRLLERQGIRIVTGIPGGAILPLYDALSQSTQIRHILARHEQGAGFIAQGMARTTGKPAVCMACSGPG 87 (564)
T ss_pred ccCCcccHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHcCCCeEEEECCCCc
Confidence 345567999999999999999999999999999999999754 7999999999999999999999999999999999999
Q ss_pred hhhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 83 LLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 83 ~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
++|+++||++|+.+++|||+|+|+++....+++.+|++||.++++++|||++++++++++++.+++|++.|+++||||
T Consensus 88 ~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GP 165 (564)
T PRK08155 88 ATNLVTAIADARLDSIPLVCITGQVPASMIGTDAFQEVDTYGISIPITKHNYLVRDIEELPQVISDAFRIAQSGRPGP 165 (564)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccCCcccccCCCccccchhhhhhccceEEEEcCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998898
No 84
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=100.00 E-value=1e-44 Score=439.77 Aligned_cols=150 Identities=37% Similarity=0.538 Sum_probs=146.6
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhHHH
Q psy14416 11 ANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGM 90 (1065)
Q Consensus 11 ~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~gl 90 (1065)
++++|++.|+++||++|||+||+++++|++++.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+++||
T Consensus 1 ~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~gl 80 (539)
T TIGR02418 1 GADLVVDQLENQGVRYVFGIPGAKIDRVFDALEDKGIELIVVRHEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTGL 80 (539)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhCCCCEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHHH
Confidence 47999999999999999999999999999999877899999999999999999999999999999999999999999999
Q ss_pred hhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 91 ANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 91 a~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
++|+.+++|||+|+|+.++...+++.||++||.++++++|||++++++++++++.+++|++.|+++||||
T Consensus 81 ~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~i~~~~~~~~~~~~A~~~a~~~~~GP 150 (539)
T TIGR02418 81 ATANSEGDPVVAIGGQVKRADLLKLTHQSMDNVALFRPITKYSAEVQDPDALSEVVANAFRAAESGKPGA 150 (539)
T ss_pred HHHhhcCCCEEEEeCCCcccccccCcccccchhhhhhcceeeeeecCCHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999988999999999999999999999999999999999999999999999999
No 85
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=2.2e-44 Score=438.63 Aligned_cols=153 Identities=30% Similarity=0.464 Sum_probs=148.6
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 86 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~ 86 (1065)
+|+++++|++.|+++||++|||+||+++++|+++|.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 2 ~~~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~~l~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~ 81 (563)
T PRK08527 2 KLSGSQMVCEALKEEGVKVVFGYPGGAILNIYDEIYKQNYFKHILTRHEQAAVHAADGYARASGKVGVAIVTSGPGFTNA 81 (563)
T ss_pred CCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHH
Confidence 4789999999999999999999999999999999975 479999999999999999999999999999999999999999
Q ss_pred hHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 87 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 87 l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
++|+++|+.+++|||+|+|++++...+++.+|++||.++++++|||+.++++++++++.+++|++.|++++|||
T Consensus 82 ~~gla~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~~tk~s~~v~~~~~i~~~l~~A~~~a~s~~~GP 155 (563)
T PRK08527 82 VTGLATAYMDSIPLVLISGQVPNSLIGTDAFQEIDAVGISRPCVKHNYLVKSIEELPRILKEAFYIARSGRPGP 155 (563)
T ss_pred HHHHHHHhhcCCCEEEEecCCCccccCCCCCcccchhhhhhcccceEEEcCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999988999999999999999999999999999999999999999999998888
No 86
>KOG4166|consensus
Probab=100.00 E-value=1.4e-45 Score=400.76 Aligned_cols=270 Identities=29% Similarity=0.457 Sum_probs=251.5
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
...|++|.+.+.+.+++|++|||.||+.++++++|+.++ .+++|..|||++|+|||.||+|.+||||||++|+|||++|
T Consensus 89 vg~tGg~If~emm~rqnV~tVFgYPGGAilpv~dAi~rS~~f~fvLPrHEQgaghaAegYaR~sgKPGvvlvTSGPGATN 168 (675)
T KOG4166|consen 89 VGRTGGDIFVEMMERQNVETVFGYPGGAILPVHDAITRSSSFRFVLPRHEQGAGHAAEGYARSSGKPGVVLVTSGPGATN 168 (675)
T ss_pred cCCchhHHHHHHHHhcCCceEeecCCcceeehHhhhhcCccccccccccccccchhhhhhhhhcCCCcEEEEecCCCccc
Confidence 468999999999999999999999999999999999864 6999999999999999999999999999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc-----
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR----- 160 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP----- 160 (1065)
.+++|++|+.|++||+++|||.|++..|.++|||.|.+.+.+.||||.+.+.+.+++|+.+++||..|.++||||
T Consensus 169 vvtp~ADAlaDg~PlVvftGQVptsaIGtDAFQEadiVgisRScTKwNvmVkdVedlPrrI~EAFeiATSGRPGPVLVDl 248 (675)
T KOG4166|consen 169 VVTPLADALADGVPLVVFTGQVPTSAIGTDAFQEADIVGISRSCTKWNVMVKDVEDLPRRIEEAFEIATSGRPGPVLVDL 248 (675)
T ss_pred ccchhhHHhhcCCcEEEEecccchhhcccchhccCCeeeeeeccceeheeeecHHHhhHHHHHHhhhhccCCCCCeEeeC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 249 PKDvta~~l~~pip~~~~lPsn~~m~~~~~~~~~~v~~~i~~~a~Li~laKKPVlyvG~G~Ln~~d~p~lL~~fser~qI 328 (675)
T KOG4166|consen 249 PKDVTAQLLIPPIPQAMRLPSNAYMSRMPKPPEDFVMSHIEQIARLISLAKKPVLYVGGGCLNSSDGPRLLGRFSERTQI 328 (675)
T ss_pred cHHHHHHHhcCCchhhhcCCchhhHhhCCCCchhhHHHHHHHHHHHHHhccCceEEeCcccccCCcchHHHHHHHHhhcC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 329 PVtttL~GLGs~d~~d~lSLhMLGMHG~~yAN~Avq~aDLilA~GvRFDDRVTGn~s~FAp~Ar~aaae~rggIiHfdis 408 (675)
T KOG4166|consen 329 PVTTTLMGLGSYDCDDELSLHMLGMHGTVYANYAVQHADLILAFGVRFDDRVTGNLSAFAPRARRAAAEGRGGIIHFDIS 408 (675)
T ss_pred cceehhhcccCcCCCCchhhhhhcccccceehhhhhccceeEEecceeccccccchhhhChhhhhhhhcccCceEEEecC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 409 pknIgKvvqp~~aveGDv~~~L~~m~s~~kn~~~~~r~dW~~qin~wK~~fP~sf~~~tpGe~ikPQ~vIk~Ldk~t~d~ 488 (675)
T KOG4166|consen 409 PKNIGKVVQPHVAVEGDVKLALQGMNSVLKNRAEELRLDWRNQINVWKQKFPLSFKEETPGEAIKPQYVIKVLDKLTDDT 488 (675)
T ss_pred HHHhCcccCcceeeeccHHHHHHHHHhHhhcccchhhhhHHHHHHHHHHhCCeeeeccCCccccChHHHHHHHHHhccCc
Confidence
Q ss_pred ------------------cccccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHh
Q psy14416 161 ------------------SLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL 222 (1065)
Q Consensus 161 ------------------~~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~ 222 (1065)
.++.-..|.+|+.+++.|+||||+|+|+||++| +|+.-||=+.||+||.|+.|||+|+
T Consensus 489 ~~kviitTGVGqHQMWAAqfy~w~kP~~~~tSGGLGtMGfGLPAAIGAsVA----~P~~iViDIDGDaSF~Mt~~ELat~ 564 (675)
T KOG4166|consen 489 GRKVIITTGVGQHQMWAAQFYNWKKPRQWLTSGGLGTMGFGLPAAIGASVA----NPDAIVIDIDGDASFIMTVQELATI 564 (675)
T ss_pred CceEEEeccccHHHHHHHHHhcccCccceeecCCccccccCcchhhccccc----CcccEEEeccCCceeeeehHhhhhh
Confidence 334447899999999999999999999999999 8999999999999999999999999
Q ss_pred hhcCCCEEEEEEcCCeeeeccccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchhh
Q psy14416 223 VRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIE 295 (1065)
Q Consensus 223 vr~~lpivivV~NN~gy~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~ 295 (1065)
++.++|+.|+++||. ..||.. +||.++|..+++-+-..+ +..-.++++ +|+++-++..
T Consensus 565 rq~~~PVKiLiLNNe--eqGMVt---QWq~lFYe~rysHThQ~n-Pnf~klA~A---------mGikalRV~K 622 (675)
T KOG4166|consen 565 RQENLPVKILILNNE--EQGMVT---QWQDLFYEARYSHTHQEN-PNFLKLAAA---------MGIKALRVTK 622 (675)
T ss_pred hhcCCceEEEEecch--hhhhHH---HHHHHHHHhhhccccccC-ccHHHHHHh---------cCCchheeeh
Confidence 999999999999999 669987 999999988775443333 566778887 8999987754
No 87
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=100.00 E-value=1.6e-44 Score=441.16 Aligned_cols=152 Identities=20% Similarity=0.359 Sum_probs=148.4
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 87 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l 87 (1065)
+||++++|++.|+++||++|||+||+++.+|++++.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 1 ~~~~~~~l~~~L~~~GV~~vFGipG~~~~~l~dal~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~~ 80 (579)
T TIGR03457 1 KMTPSEAFVEVLVANGVTHAFGIMGSAFMDAMDLFPPAGIRFIPVVHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNCV 80 (579)
T ss_pred CCcHHHHHHHHHHHCCCCEEEEccCcchHHHHHHHhhcCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHH
Confidence 57999999999999999999999999999999999878899999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 88 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 88 ~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+||++|+.+++|||+|+|+.++...+++.+|++||.++++++|||++++++++++++.+++|++.|.+++ ||
T Consensus 81 ~gla~A~~~~~Pvl~I~g~~~~~~~~~~~~Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~-GP 152 (579)
T TIGR03457 81 TAIAAAYWAHTPVVIVTPEAGTKTIGLGGFQEADQLPMFQEFTKYQGHVRHPSRMAEVLNRCFERAWREM-GP 152 (579)
T ss_pred HHHHHHhhcCCCEEEEeCCCccccCCCCCCcccchhhhhhcceeEEEecCCHHHHHHHHHHHHHHHhcCC-CC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999885 88
No 88
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=2e-44 Score=437.67 Aligned_cols=151 Identities=26% Similarity=0.407 Sum_probs=147.2
Q ss_pred ccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhH
Q psy14416 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 88 (1065)
Q Consensus 9 ~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~ 88 (1065)
+|++++|++.|+++||++|||+||+++++|++++.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus 2 ~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~i~~v~~~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l~ 81 (549)
T PRK06457 2 PSVAEVIIRVLEDNGIQRIYGIPGDSIDPLVDAIRKSKVKYVQVRHEEGAALAASVEAKITGKPSACMGTSGPGSIHLLN 81 (549)
T ss_pred CcHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHhcCCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhHH
Confidence 69999999999999999999999999999999998778999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 89 GMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 89 gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
|+++|+.+++|||+|+|+.+....+++.+|++||.++++++|||++++++++++++.+++|++.|+++ +||
T Consensus 82 ~l~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~-~GP 152 (549)
T PRK06457 82 GLYDAKMDHAPVIALTGQVESDMIGHDYFQEVNLTKLFDDVAVFNQILINPENAEYIIRRAIREAISK-RGV 152 (549)
T ss_pred HHHHHHhcCCCEEEEecCCCccccCCCcccccchhhhhccceeEEEEeCCHHHHHHHHHHHHHHHhcC-CCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999885 488
No 89
>PRK08611 pyruvate oxidase; Provisional
Probab=100.00 E-value=3.3e-44 Score=437.69 Aligned_cols=154 Identities=29% Similarity=0.446 Sum_probs=148.2
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh--CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcch
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ--EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGL 83 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~--~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~ 83 (1065)
|..+|++++|++.|+++||++|||+||+++.+|+++|.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||+
T Consensus 1 ~~~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~ 80 (576)
T PRK08611 1 MAKIKAGEALVKLLQDWGIDHVYGIPGDSIDAVVDALRKEQDKIKFIQVRHEEVAALAAAAYAKLTGKIGVCLSIGGPGA 80 (576)
T ss_pred CCCCcHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCcH
Confidence 556899999999999999999999999999999999964 479999999999999999999999999999999999999
Q ss_pred hhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 84 LHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 84 ~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+|+++||++|+.+++|||+|+|++++...+++.+|++||.++++++|||++++++++++++.+++|++.|++++ ||
T Consensus 81 ~N~l~gla~A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~-GP 156 (576)
T PRK08611 81 IHLLNGLYDAKMDHVPVLALAGQVTSDLLGTDFFQEVNLEKMFEDVAVYNHQIMSAENLPEIVNQAIRTAYEKK-GV 156 (576)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCCcccccCCCCccccCHHHHhhcccceeEEeCCHHHHHHHHHHHHHHHhhCC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998864 88
No 90
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=3.7e-44 Score=437.71 Aligned_cols=153 Identities=27% Similarity=0.394 Sum_probs=146.9
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
|+||++++|++.|+++||++|||+||+++++|+++|.+. +|++|.+|||++|+|||+||+|+||||+||++|+|||.+|
T Consensus 1 ~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n 80 (574)
T PRK09124 1 MKQTVADYIAKTLEQAGVKRIWGVTGDSLNGLSDSLRRMGTIEWMHTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLH 80 (574)
T ss_pred CCccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhccCCCcEEEeCcHHHHHHHHHHHHHhhCCcEEEEECCCCCHHH
Confidence 458999999999999999999999999999999999764 7999999999999999999999999999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+++|+++|+.+++|||+|+|+.+....+++.+|++||.+++++++||++++++++++++.+++|++.|++. +||
T Consensus 81 ~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~Q~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~-~gP 154 (574)
T PRK09124 81 LINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSNPEQLPRVLAIAMRKAILN-RGV 154 (574)
T ss_pred HHHHHHHHhhcCCCEEEEecCCccccCCCCCccccChhhhcccceeeeEEeCCHHHHHHHHHHHHHHHhcC-CCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999874 466
No 91
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=100.00 E-value=2.5e-44 Score=441.69 Aligned_cols=154 Identities=26% Similarity=0.427 Sum_probs=149.3
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
.+||++|+|++.|+++||++|||+||+++.+|+++|.+. +|++|.||||++|+|||+||+|+||||+||++|+|||++|
T Consensus 29 ~~~~~a~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N 108 (612)
T PRK07789 29 ERMTGAQAVVRSLEELGVDVVFGIPGGAILPVYDPLFDSTKVRHVLVRHEQGAGHAAEGYAQATGRVGVCMATSGPGATN 108 (612)
T ss_pred ccccHHHHHHHHHHHCCCCEEEEcCCcchHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHH
Confidence 357999999999999999999999999999999999654 7999999999999999999999999999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+++||++|+.+++|||+|+|+.+....+++.+|++||..+++++|||++++++++++++.+++|++.|+++|+||
T Consensus 109 ~l~gl~~A~~~~~PllvI~G~~~~~~~~~~~~q~~d~~~l~~~~tk~s~~v~~~~~i~~~l~~A~~~A~~~~~GP 183 (612)
T PRK07789 109 LVTPIADANMDSVPVVAITGQVGRGLIGTDAFQEADIVGITMPITKHNFLVTDADDIPRVIAEAFHIASTGRPGP 183 (612)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCCcCcccchhhhhhcceeEEEEcCCHHHHHHHHHHHHHHHhcCCCce
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998888
No 92
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=100.00 E-value=4.2e-44 Score=438.46 Aligned_cols=150 Identities=25% Similarity=0.337 Sum_probs=144.6
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh--CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ--EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 84 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~--~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~ 84 (1065)
|+||++|+|++.|+++||++|||+||+++++|+++|.+ .+|++|.+|||++|+|||+||+|+|||||||++|+|||++
T Consensus 1 ~~~~~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~ 80 (597)
T PRK08273 1 MSQTVADFILERLREWGVRRVFGYPGDGINGLLGALGRADDKPEFVQARHEEMAAFMAVAHAKFTGEVGVCLATSGPGAI 80 (597)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHH
Confidence 45899999999999999999999999999999999965 3699999999999999999999999999999999999999
Q ss_pred hhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhccccc-ceeccCCCcccHHHHHHHHHHHhhcC
Q psy14416 85 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYC-KYSARPPNIHLIGQHVEKAVRLSTFG 156 (1065)
Q Consensus 85 N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~it-k~~~~v~~~~~i~~~l~~A~~~A~~~ 156 (1065)
|+++||++|+.+++|||+|+|++++...+++.+|++||.++++++| ||+.++++++++++.+++|++.|+++
T Consensus 81 n~~~gi~~A~~d~vPvl~I~G~~~~~~~~~~~~q~~d~~~l~~~vt~k~~~~v~~~~~~~~~l~~A~~~A~~~ 153 (597)
T PRK08273 81 HLLNGLYDAKLDHVPVVAIVGQQARAALGGHYQQEVDLQSLFKDVAGAFVQMVTVPEQLRHLVDRAVRTALAE 153 (597)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCchhhcCCCCCCccCHHHHHHHHHHHHeeEeCCHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999775
No 93
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=5.2e-44 Score=436.69 Aligned_cols=155 Identities=33% Similarity=0.519 Sum_probs=149.7
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchh
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 84 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~ 84 (1065)
|.+||++++|++.|+++||++|||+||+++++|++++.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++
T Consensus 1 ~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~ 80 (574)
T PRK06882 1 MKKLSGAEMVVQSLRDEGVEYVFGYPGGSVLDIYDAIHTLGGIEHVLVRHEQAAVHMADGYARSTGKVGCVLVTSGPGAT 80 (574)
T ss_pred CCcccHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhcCCCeEEEeccHHHHHHHHHHHHHhhCCCeEEEECCCccHH
Confidence 456899999999999999999999999999999999976 4799999999999999999999999999999999999999
Q ss_pred hhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 85 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 85 N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
|+++||++|+.+++|||+|+|++++...+++.+|++||..+++++|||+.++++++++++.+++|++.|.+++|||
T Consensus 81 N~l~~i~~A~~~~~Pvlvi~G~~~~~~~~~~~~q~~d~~~l~~~vtk~s~~v~~~~~~~~~l~~A~~~A~~~~~GP 156 (574)
T PRK06882 81 NAITGIATAYTDSVPLVILSGQVPSNLIGTDAFQECDMLGISRPVVKHSFIVKNAEDIPSTIKKAFYIASTGRPGP 156 (574)
T ss_pred HHHHHHHHHhhcCCCEEEEecCCCccccCCCcccccchhhhhhcccceEEEeCCHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888777
No 94
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=100.00 E-value=2.1e-43 Score=431.38 Aligned_cols=156 Identities=29% Similarity=0.399 Sum_probs=148.9
Q ss_pred ccccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh---C-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCC
Q psy14416 5 YDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ---E-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSG 80 (1065)
Q Consensus 5 ~~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~---~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~G 80 (1065)
.-+.|+++++|++.|+++||++|||+||+++++|+++|.+ . +|++|.+|||++|+|||+||+|+||||+||++|+|
T Consensus 6 ~~~~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~d~l~~~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~G 85 (585)
T CHL00099 6 TLREKTGAFALIDSLVRHGVKHIFGYPGGAILPIYDELYAWEKKGLIKHILVRHEQGAAHAADGYARSTGKVGVCFATSG 85 (585)
T ss_pred ccccccHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCcCCCceEEEecCHHHHHHHHHHHHHhcCCcEEEEECCC
Confidence 3456899999999999999999999999999999999964 2 49999999999999999999999999999999999
Q ss_pred cchhhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 81 PGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 81 PG~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
||++|+++||++|+.+++|||+|+|+.++...+++.+|++||..+++++|||+.++++++++++.+++|++.|.++||||
T Consensus 86 PG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~~~GP 165 (585)
T CHL00099 86 PGATNLVTGIATAQMDSVPLLVITGQVGRAFIGTDAFQEVDIFGITLPIVKHSYVVRDARDISRIVAEAFYIAKHGRPGP 165 (585)
T ss_pred CcHHHHHHHHHHHhhcCCCEEEEecCCCccccCCCCccccchhhhhcCceeEEEEeCCHHHHHHHHHHHHHHHccCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888777
No 95
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=100.00 E-value=1.4e-43 Score=430.83 Aligned_cols=153 Identities=42% Similarity=0.752 Sum_probs=146.4
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 87 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l 87 (1065)
.++++|+|++.|+++||++|||+||+++.++++++.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 2 ~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~~~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~ 81 (554)
T TIGR03254 2 LTDGFHLVIDALKLNGINTIYGVVGIPVTDLARLAQAKGMRYIGFRHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNGL 81 (554)
T ss_pred CCcHHHHHHHHHHHcCCCEEEeCCCcchhHHHHHHhhcCCcEEEeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhHH
Confidence 46899999999999999999999999999999999877899999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCcEEEEecCCCCCc--CccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 88 GGMANAQINCWPMLVIGGSCAQDH--EGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 88 ~gla~A~~~~~Pll~Isg~~~~~~--~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+|+++|+.+++|||+|+|+.+... .+++.+|++||..+++++|||++++++++++++.+++|++.|+++||||
T Consensus 82 ~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~pGP 156 (554)
T TIGR03254 82 TALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAKAAYRVLRAEDIGIGIARAIRTAVSGRPGG 156 (554)
T ss_pred HHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhheeEEEcCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 999999999999999999999774 3667899999999999999999999999999999999999999999888
No 96
>PRK07524 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-43 Score=429.20 Aligned_cols=152 Identities=26% Similarity=0.422 Sum_probs=145.7
Q ss_pred ccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhH
Q psy14416 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 88 (1065)
Q Consensus 9 ~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~ 88 (1065)
.|++|+|++.|+++||++|||+||+++++++++|.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus 2 ~~~a~~l~~~L~~~Gv~~vFg~pG~~~~~~~dal~~~~i~~i~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~~~ 81 (535)
T PRK07524 2 TTCGEALVRLLEAYGVETVFGIPGVHTVELYRGLAGSGIRHVTPRHEQGAGFMADGYARVSGKPGVCFIITGPGMTNIAT 81 (535)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhcCCcEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHH
Confidence 48999999999999999999999999999999998778999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCcEEEEecCCCCCcCccC--CCcc-cchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 89 GMANAQINCWPMLVIGGSCAQDHEGIG--GFQE-CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 89 gla~A~~~~~Pll~Isg~~~~~~~g~~--~~Q~-~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
||++|+.+++|||+|+|+.+....+++ .+|+ .||.++++++|||++++.+++++++.+++|++.|.++||||
T Consensus 82 gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GP 156 (535)
T PRK07524 82 AMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGVAAFSHTLMSAEDLPEVLARAFAVFDSARPRP 156 (535)
T ss_pred HHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhhceeEEEeCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 999999999999999999998877753 6676 59999999999999999999999999999999999999999
No 97
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-43 Score=431.07 Aligned_cols=153 Identities=26% Similarity=0.373 Sum_probs=147.7
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
|.||++++|++.|+++||+++||+||+++++|+++|.+. +|++|.||||++|+|||+||+|+||||+||++|+|||++|
T Consensus 1 ~~~t~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N 80 (578)
T PRK06546 1 MAKTVAEQLVEQLVAAGVKRIYGIVGDSLNPIVDAVRRTGGIEWVHVRHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLH 80 (578)
T ss_pred CCccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhccCCCeEEEeCcHHHHHHHHHhHHHhhCCceEEEECCCCcHHH
Confidence 348999999999999999999999999999999999875 7999999999999999999999999999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+++|+++|+.+++|||+|+|+.+....+++.+|++||.++++++|||++++++++++++.+++|++.|++ +|||
T Consensus 81 ~~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~Qe~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~-~~GP 154 (578)
T PRK06546 81 LINGLYDAHRSGAPVLAIASHIPSAQIGSGFFQETHPDRLFVECSGYCEMVSSAEQAPRVLHSAIQHAVA-GGGV 154 (578)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCccccCCCCccccChhhhcccceeeEeEeCCHHHHHHHHHHHHHHHhc-CCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999985 5688
No 98
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=2.6e-43 Score=430.86 Aligned_cols=152 Identities=26% Similarity=0.391 Sum_probs=148.2
Q ss_pred ccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhH
Q psy14416 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 88 (1065)
Q Consensus 9 ~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~ 88 (1065)
|+++|+|++.|+++||++|||+||+++.+|+++|.+.+|++|.||||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l~ 80 (586)
T PRK06276 1 MKGAEAIIKALEAEGVKIIFGYPGGALLPFYDALYDSDLIHILTRHEQAAAHAADGYARASGKVGVCVATSGPGATNLVT 80 (586)
T ss_pred CcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHH
Confidence 68999999999999999999999999999999998778999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 89 GMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 89 gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
|+++|+.+++|||+|+|+.++...+++.+|++||.++++++|||++++++++++++.+++|++.|+++||||
T Consensus 81 ~i~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk~s~~v~~~~~i~~~i~~A~~~A~~~~~GP 152 (586)
T PRK06276 81 GIATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGIFMPITKHNFQIKKPEEIPEIFRAAFEIAKTGRPGP 152 (586)
T ss_pred HHHHHHhcCCCEEEEeCCCCccccCCCCCccccHhhHHhhhcceEEecCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999988777
No 99
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=100.00 E-value=2.3e-43 Score=429.27 Aligned_cols=155 Identities=30% Similarity=0.464 Sum_probs=150.3
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchh
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 84 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~ 84 (1065)
.+.++++++|++.|+++||++|||+||+++++|+++|.+. +|++|.+|||++|+|||+||+|+||||+||++|+|||++
T Consensus 5 ~~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~ 84 (557)
T PRK08199 5 PRARTGGQILVDALRANGVERVFCVPGESYLAVLDALHDETDIRVIVCRQEGGAAMMAEAYGKLTGRPGICFVTRGPGAT 84 (557)
T ss_pred cccCcHHHHHHHHHHHcCCCEEEeCCCcchhHHHHHhhccCCCcEEEeccHHHHHHHHHHHHHhcCCCEEEEeCCCccHH
Confidence 3457999999999999999999999999999999999765 599999999999999999999999999999999999999
Q ss_pred hhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 85 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 85 N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
|+++||++|+.+++|||+|+|+++....+++.+|++||.++++++|||++++++++++++.+++|++.|+++||||
T Consensus 85 N~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~~~~A~~~A~~~~~GP 160 (557)
T PRK08199 85 NASIGVHTAFQDSTPMILFVGQVARDFREREAFQEIDYRRMFGPMAKWVAEIDDAARIPELVSRAFHVATSGRPGP 160 (557)
T ss_pred HHHHHHHHHhhcCCCEEEEecCCccccCCCCcccccCHHHhhhhhhceeeecCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998
No 100
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=100.00 E-value=2.9e-43 Score=428.68 Aligned_cols=152 Identities=32% Similarity=0.454 Sum_probs=148.2
Q ss_pred ccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHH-hCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhh
Q psy14416 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQ-QEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 87 (1065)
Q Consensus 9 ~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~-~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l 87 (1065)
||++++|++.|+++||++|||+||+++++|+++|. +.+|++|.||||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~~l~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l 80 (558)
T TIGR00118 1 MSGAEAIIESLKDEGVKTVFGYPGGAILPIYDALYNDSGIEHILVRHEQGAAHAADGYARASGKVGVVLVTSGPGATNLV 80 (558)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHH
Confidence 68999999999999999999999999999999997 46799999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 88 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 88 ~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+||++|+.+++|||+|+|++++...+++.+|++||..+++++|||++++++++++++.+++|++.|+++++||
T Consensus 81 ~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~v~~A~~~A~~~~~GP 153 (558)
T TIGR00118 81 TGIATAYMDSIPMVVFTGQVPTSLIGSDAFQEADILGITMPITKHSFQVKSAEDIPRIIKEAFHIATTGRPGP 153 (558)
T ss_pred HHHHHHHhcCCCEEEEecCCCccccCCCCCcccChhhhhcCccceeEEeCCHHHHHHHHHHHHHHHhcCCCCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998888
No 101
>PRK06154 hypothetical protein; Provisional
Probab=100.00 E-value=9.5e-43 Score=423.34 Aligned_cols=154 Identities=23% Similarity=0.318 Sum_probs=142.8
Q ss_pred CCcccccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhc--CCcEEEEEeC
Q psy14416 2 SEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLT--KKPGVCLVVS 79 (1065)
Q Consensus 2 ~~~~~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~t--g~~gv~~~t~ 79 (1065)
.+..+++||++++|++.|+++||++|||+|| .+++++|.+.+|++|.||||++|+|||+||+|+| ||++||++|+
T Consensus 13 ~~~~~~~~~~a~~l~~~L~~~GV~~vFGip~---~~l~dal~~~~i~~i~~rhE~~A~~mAdgyar~t~g~~~gv~~~t~ 89 (565)
T PRK06154 13 LPAEAKTMKVAEAVAEILKEEGVELLFGFPV---NELFDAAAAAGIRPVIARTERVAVHMADGYARATSGERVGVFAVQY 89 (565)
T ss_pred CCCCcCcccHHHHHHHHHHHcCCCEEEeCcC---HHHHHHHHhcCCeEEeeCcHHHHHHHHHHHHHhcCCCCCEEEEECC
Confidence 4466788999999999999999999999994 4899999878899999999999999999999999 4999999999
Q ss_pred CcchhhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCc
Q psy14416 80 GPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159 (1065)
Q Consensus 80 GPG~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpG 159 (1065)
|||++|+++||++|+.+++|||+|+|+.+....+.+ +++|+.++++++|||+.++.+++++++.+++|++.|+++|||
T Consensus 90 GPG~~N~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~--~~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~s~~~G 167 (565)
T PRK06154 90 GPGAENAFGGVAQAYGDSVPVLFLPTGYPRGSTDVA--PNFESLRNYRHITKWCEQVTLPDEVPELMRRAFTRLRNGRPG 167 (565)
T ss_pred CccHHHHHHHHHHHhhcCCCEEEEeCCCCcccccCC--CCcchhhhHhhcceeEEECCCHHHHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999988765443 357889999999999999999999999999999999999988
Q ss_pred c
Q psy14416 160 R 160 (1065)
Q Consensus 160 P 160 (1065)
|
T Consensus 168 P 168 (565)
T PRK06154 168 P 168 (565)
T ss_pred e
Confidence 8
No 102
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=100.00 E-value=3.5e-43 Score=428.60 Aligned_cols=149 Identities=26% Similarity=0.394 Sum_probs=143.5
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC--CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhH
Q psy14416 11 ANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE--GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 88 (1065)
Q Consensus 11 ~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~--~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~ 88 (1065)
++++|++.|+++||++|||+||+++++|+++|.+. +|++|.+|||++|+|||+||+|+|||||||++|+|||++|+++
T Consensus 1 ~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~~i~~v~~rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~ 80 (575)
T TIGR02720 1 ASAAVLKVLEAWGVDHIYGIPGGSFNSTMDALSAERDRIHYIQVRHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLN 80 (575)
T ss_pred CHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhcCCCCcEEEeccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHH
Confidence 47899999999999999999999999999999653 5999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 89 GMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 89 gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
|+++|+.+++|||+|+|+.++...+++.+|++||.++++++|||+.++.+++++++.+++|++.|++ ++||
T Consensus 81 ~i~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~id~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~-~~GP 151 (575)
T TIGR02720 81 GLYDAKEDHVPVLALVGQVPTTGMNMDTFQEMNENPIYADVAVYNRTAMTAESLPHVIDEAIRRAYA-HNGV 151 (575)
T ss_pred HHHHHhhcCCCEEEEecCCccccCCCCCcceechhhhhhhcceEEEEeCCHHHHHHHHHHHHHHHhh-CCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 5688
No 103
>PRK08266 hypothetical protein; Provisional
Probab=100.00 E-value=1e-42 Score=422.71 Aligned_cols=155 Identities=28% Similarity=0.377 Sum_probs=146.6
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC--CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcch
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE--GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGL 83 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~--~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~ 83 (1065)
|.+||++++|++.|+++||++|||+||+++++|+++|.+. +|++|.++||++|+|||+||+|+||||+||++|+|||+
T Consensus 1 ~~~~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~ 80 (542)
T PRK08266 1 MTTMTGGEAIVAGLVAHGVDTVFGLPGAQLYWLFDALYKAGDRIRVIHTRHEQAAGYMAFGYARSTGRPGVCSVVPGPGV 80 (542)
T ss_pred CCCCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhcCCCCeEEeeccHHHHHHHHHHHHHHhCCCeEEEECCCCcH
Confidence 4568999999999999999999999999999999999764 79999999999999999999999999999999999999
Q ss_pred hhhhHHHhhcccCCCcEEEEecCCCCCcCccC--CCcc-cchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 84 LHTFGGMANAQINCWPMLVIGGSCAQDHEGIG--GFQE-CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 84 ~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~--~~Q~-~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+|+++|+++|+.+++|||+|+|+++....+++ .+|+ .||.++++++|||+.++++++++++.+++|++.|+++||||
T Consensus 81 ~N~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GP 160 (542)
T PRK08266 81 LNAGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPDQLATLRSFTKWAERIEHPSEAPALVAEAFQQMLSGRPRP 160 (542)
T ss_pred HHHHHHHHHHHhhCCCEEEEecCCChhhccCCCCcceecccHhhHHhhhcceEEEeCCHHHHHHHHHHHHHHHhhCCCCc
Confidence 99999999999999999999999998876664 4566 59999999999999999999999999999999999999999
No 104
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=100.00 E-value=1e-42 Score=425.76 Aligned_cols=153 Identities=21% Similarity=0.363 Sum_probs=148.5
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 86 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~ 86 (1065)
++||++++|++.|+++||++|||+||+++.+|++++.+.+|++|.||||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 4 ~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~ 83 (588)
T PRK07525 4 MKMTPSEAFVETLQAHGITHAFGIIGSAFMDASDLFPPAGIRFIDVAHEQNAGHMADGYTRVTGRMGMVIGQNGPGITNF 83 (588)
T ss_pred ccccHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhccCCCEEEecCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHH
Confidence 45899999999999999999999999999999999987789999999999999999999999999999999999999999
Q ss_pred hHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 87 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 87 l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
++||++|+.+++|||+|+|+.+....+++.+|++||.+++++++||++++++++++++.+++|++.|+++ +||
T Consensus 84 ~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~i~~~~~~~~~i~rA~~~A~~~-~GP 156 (588)
T PRK07525 84 VTAVATAYWAHTPVVLVTPQAGTKTIGQGGFQEAEQMPMFEDMTKYQEEVRDPSRMAEVLNRVFDKAKRE-SGP 156 (588)
T ss_pred HHHHHHHhhcCCCEEEEeCCCCcccCCCCCCcccchhhhhhhheeEEEECCCHHHHHHHHHHHHHHHhcC-CCC
Confidence 9999999999999999999999998899999999999999999999999999999999999999999987 588
No 105
>PRK07064 hypothetical protein; Provisional
Probab=100.00 E-value=6.1e-43 Score=424.92 Aligned_cols=153 Identities=22% Similarity=0.281 Sum_probs=145.2
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 86 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~ 86 (1065)
++|++++|++.|+++||++|||+||+++++|++++.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 2 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~ 81 (544)
T PRK07064 2 KVTVGELIAAFLEQCGVKTAFGVISIHNMPILDAIGRRGKIRFVPARGEAGAVNMADAHARVSGGLGVALTSTGTGAGNA 81 (544)
T ss_pred CccHHHHHHHHHHHcCCCEEEeCCCCcchHHHHHHhccCCccEEeeccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHH
Confidence 5799999999999999999999999999999999965 479999999999999999999999999999999999999999
Q ss_pred hHHHhhcccCCCcEEEEecCCCCCcCccCC--Ccc-cchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 87 FGGMANAQINCWPMLVIGGSCAQDHEGIGG--FQE-CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 87 l~gla~A~~~~~Pll~Isg~~~~~~~g~~~--~Q~-~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
++||++|+.+++|||+|+|+.++...+++. +|+ +||.++++++|||++++++++++++.+++|++.|++++|||
T Consensus 82 ~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GP 158 (544)
T PRK07064 82 AGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAVSKAAFRVRSAETALATIREAVRVALTAPTGP 158 (544)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhhcceEEEeCCHHHHHHHHHHHHHHhccCCCCc
Confidence 999999999999999999999988777763 555 69999999999999999999999999999999999998888
No 106
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=100.00 E-value=1.2e-42 Score=423.83 Aligned_cols=154 Identities=43% Similarity=0.776 Sum_probs=147.2
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 86 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~ 86 (1065)
-.|+++++|++.|+++||++|||+||+.++++++++.+.+|++|.||||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 8 ~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~~~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~ 87 (569)
T PRK09259 8 QLTDGFHLVIDALKLNGIDTIYGVVGIPITDLARLAQAEGIRYIGFRHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNG 87 (569)
T ss_pred CCCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhCCCCEEeeCCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHH
Confidence 35799999999999999999999999999999999987789999999999999999999999999999999999999999
Q ss_pred hHHHhhcccCCCcEEEEecCCCCCc--CccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 87 FGGMANAQINCWPMLVIGGSCAQDH--EGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 87 l~gla~A~~~~~Pll~Isg~~~~~~--~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
++||++|+.+++|||+|+|+.++.. .+++.+|++||..+++++|||++++++++++++.+++|++.|+++||||
T Consensus 88 l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~~tk~s~~v~~~~~~~~~i~~A~~~A~~~~~GP 163 (569)
T PRK09259 88 LTALANATTNCFPMIMISGSSEREIVDLQQGDYEELDQLNAAKPFCKAAFRVNRAEDIGIGVARAIRTAVSGRPGG 163 (569)
T ss_pred HHHHHHHHhcCCCEEEEEccCCcccccccCCCccccchhhhhhhheeeeEEcCCHHHHHHHHHHHHHHhhhCCCCc
Confidence 9999999999999999999998764 3567899999999999999999999999999999999999999999988
No 107
>PLN02573 pyruvate decarboxylase
Probab=100.00 E-value=1.2e-42 Score=423.18 Aligned_cols=157 Identities=20% Similarity=0.221 Sum_probs=143.7
Q ss_pred CCcccccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCC
Q psy14416 2 SEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSG 80 (1065)
Q Consensus 2 ~~~~~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~G 80 (1065)
|+-+|+.++++++|++.|+++||++|||+||+++++|+++|.+ .+|++|.||||++|+|||+||+|+|| +|||++|+|
T Consensus 9 ~~~~~~~~~~a~~l~~~L~~~Gv~~vFGvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyaR~tg-~gv~~~t~G 87 (578)
T PLN02573 9 TPVSSSDATLGRHLARRLVEIGVTDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARARG-VGACVVTFT 87 (578)
T ss_pred CccccccccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHhC-CCeEEEecC
Confidence 4567888999999999999999999999999999999999965 47999999999999999999999999 999999999
Q ss_pred cchhhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcc--------cchhhhcccccceeccCCCcccHHHHHHHHHHH
Q psy14416 81 PGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE--------CPQVELARPYCKYSARPPNIHLIGQHVEKAVRL 152 (1065)
Q Consensus 81 PG~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~--------~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~ 152 (1065)
||++|+++|+++|+.+++|||+|+|+.++...+++.+|+ .++.++++++|||+.++.+++++++.+++|++.
T Consensus 88 pG~~n~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~ 167 (578)
T PLN02573 88 VGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVINNLEDAHELIDTAIST 167 (578)
T ss_pred ccHHHHHHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHhhceEEEEEEeCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988777766432 234589999999999999999999999999999
Q ss_pred hhcCCCcc
Q psy14416 153 STFGKPGR 160 (1065)
Q Consensus 153 A~~~rpGP 160 (1065)
|+++| ||
T Consensus 168 A~~~~-gP 174 (578)
T PLN02573 168 ALKES-KP 174 (578)
T ss_pred HHhcC-CC
Confidence 98864 66
No 108
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=1.3e-41 Score=414.24 Aligned_cols=153 Identities=25% Similarity=0.296 Sum_probs=144.4
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC------CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCc
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE------GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGP 81 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~------~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GP 81 (1065)
+++++|+|++.|+++||+++||+||+++++|++++.+. +|++|.||||++|+|||+||+|+||||+||++|+||
T Consensus 6 ~~~~a~~l~~~L~~~GV~~iFgvpG~~~~~l~dal~~~~~~g~~~i~~V~~rhE~~A~~~Adgyar~tgk~gv~~~t~GP 85 (569)
T PRK08327 6 MYTAAELFLELLKELGVDYIFINSGTDYPPIIEAKARARAAGRPLPEFVICPHEIVAISMAHGYALVTGKPQAVMVHVDV 85 (569)
T ss_pred cccHHHHHHHHHHHCCCCEEEEcCCCCcHHHHHHHHhhhhcCCCCCcEEecCCHHHHHHHHHHHHHhhCCCeEEEEecCH
Confidence 46899999999999999999999999999999999643 399999999999999999999999999999999999
Q ss_pred chhhhhHHHhhcccCCCcEEEEecCCCCCcCcc--------CCCcc-cchhhhcccccceeccCCCcccHHHHHHHHHHH
Q psy14416 82 GLLHTFGGMANAQINCWPMLVIGGSCAQDHEGI--------GGFQE-CPQVELARPYCKYSARPPNIHLIGQHVEKAVRL 152 (1065)
Q Consensus 82 G~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~--------~~~Q~-~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~ 152 (1065)
|++|+++||++|+.+++|||+|+|+.+....++ +.+|+ +||..++++++||++++++++++++.+++|++.
T Consensus 86 G~~N~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~~~~vtk~~~~v~~~~~~~~~l~~A~~~ 165 (569)
T PRK08327 86 GTANALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGLVREYVKWDYEIRRGDQIGEVVARAIQI 165 (569)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHHHHhhhhhhhcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999998776544 45899 699999999999999999999999999999999
Q ss_pred hhcCCCcc
Q psy14416 153 STFGKPGR 160 (1065)
Q Consensus 153 A~~~rpGP 160 (1065)
|.++||||
T Consensus 166 a~~~~~GP 173 (569)
T PRK08327 166 AMSEPKGP 173 (569)
T ss_pred HhcCCCCC
Confidence 99999888
No 109
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=100.00 E-value=7.6e-42 Score=412.90 Aligned_cols=150 Identities=19% Similarity=0.213 Sum_probs=141.4
Q ss_pred cHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCC-CeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhH
Q psy14416 10 SANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 88 (1065)
Q Consensus 10 t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~-i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~ 88 (1065)
+.+++|++.|+++||++|||+||+++++|++++.+.+ |++|.+|||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus 1 ~~~~~l~~~L~~~Gv~~vFGvpG~~~~~l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~ 80 (535)
T TIGR03394 1 KLAEALLRALKDRGAQEMFGIPGDFALPFFKVIEETGILPLHTLSHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNMVN 80 (535)
T ss_pred CHHHHHHHHHHHcCCCEEEECCCcccHHHHHHHhhCCCCeEEcccCcchHHHHHhHHHHhhCCceEEEEecchHHHhhhh
Confidence 5789999999999999999999999999999998776 999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCcEEEEecCCCCCcCccCCCcc-----cc-hhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 89 GMANAQINCWPMLVIGGSCAQDHEGIGGFQE-----CP-QVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 89 gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~-----~d-q~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
||++|+.+++|||+|+|+.++...+++.+|+ +| |.++++++|||+.++.+++++++.+++|++.|++ +|||
T Consensus 81 gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtk~~~~v~~~~~~~~~~~~A~~~a~~-~~gP 157 (535)
T TIGR03394 81 AIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKEVTCDQAVLDDPATAPAEIARVLGSARE-LSRP 157 (535)
T ss_pred HHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhhheEEEEEeCChHHhHHHHHHHHHHHHH-CCCC
Confidence 9999999999999999999998888877443 64 7899999999999999999999999999999987 5688
No 110
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=100.00 E-value=5.8e-41 Score=405.96 Aligned_cols=153 Identities=19% Similarity=0.248 Sum_probs=147.0
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 86 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~ 86 (1065)
..+|++++|++.|+++||+++||+||+++++|++++.+ +|++|.+|||++|+|||+||+|+|||++||++|+|||++|+
T Consensus 10 ~~~~~a~~l~~~L~~~GV~~vFgiPG~~~~~l~dal~~-~i~~i~~~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~N~ 88 (530)
T PRK07092 10 AMTTVRDATIDLLRRFGITTVFGNPGSTELPFLRDFPD-DFRYVLGLQEAVVVGMADGYAQATGNAAFVNLHSAAGVGNA 88 (530)
T ss_pred ccCcHHHHHHHHHHHcCCCEEEeCCCCcchHHHHHHhh-cCCEEEEccHHHHHHHHHHHHHHhCCceEEEeccCchHHHH
Confidence 45799999999999999999999999999999999964 69999999999999999999999999999999999999999
Q ss_pred hHHHhhcccCCCcEEEEecCCCCCcCccCCCcc-cchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 87 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE-CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 87 l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~-~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
++||++|+.+++|||+|+|+.+....+++.+|+ .||.+++++++||+.++++++++++.+++|++.|+++||||
T Consensus 89 ~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GP 163 (530)
T PRK07092 89 MGNLFTAFKNHTPLVITAGQQARSILPFEPFLAAVQAAELPKPYVKWSIEPARAEDVPAAIARAYHIAMQPPRGP 163 (530)
T ss_pred HHHHHHHhhcCCCEEEEecCCcccccCccchhcccCHHHhhcccccceeecCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 999999999999999999999999888888754 79999999999999999999999999999999999999999
No 111
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=6.5e-41 Score=409.55 Aligned_cols=156 Identities=25% Similarity=0.330 Sum_probs=146.8
Q ss_pred CcccccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcc
Q psy14416 3 EDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPG 82 (1065)
Q Consensus 3 ~~~~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG 82 (1065)
++.++.|+++++|++.|+++||++|||+++... +.+++.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||
T Consensus 8 ~~~~~~~~~a~~i~~~L~~~GV~~vFG~~~~~~--~~~~~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG 85 (578)
T PRK06112 8 PGFTLNGTVAHAIARALKRHGVEQIFGQSLPSA--LFLAAEAIGIRQIAYRTENAGGAMADGYARVSGKVAVVTAQNGPA 85 (578)
T ss_pred CCCccCcCHHHHHHHHHHHCCCCEEeecccchH--hHHHHhhcCCcEEEeccHHHHHHHHHHHHHHhCCCEEEEeCCCCc
Confidence 456788999999999999999999999986543 456676678999999999999999999999999999999999999
Q ss_pred hhhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 83 LLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 83 ~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
++|+++||++|+.+++|||+|+|+.+....+++.+|++||.++++++|||+.++++++++++.+++|++.|+++||||
T Consensus 86 ~~N~~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~~GP 163 (578)
T PRK06112 86 ATLLVAPLAEALKASVPIVALVQDVNRDQTDRNAFQELDHIALFQSCTKWVRRVTVAERIDDYVDQAFTAATSGRPGP 163 (578)
T ss_pred HHHHHHHHHHHhhcCCCEEEEecCCccccCCCCCccccChhhhhccccceEEEeCCHHHHHHHHHHHHHHHhhCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998888
No 112
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=100.00 E-value=1.8e-40 Score=402.22 Aligned_cols=147 Identities=19% Similarity=0.253 Sum_probs=132.3
Q ss_pred ccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhh
Q psy14416 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 87 (1065)
Q Consensus 9 ~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l 87 (1065)
.|++++|++.|+++||++|||+||+++++|++++.+ .+|++|.+|||++|+|||+||+|+|| ++||++|+|||++|++
T Consensus 1 ~t~~~~l~~~L~~~Gv~~vFG~pG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mAdgyar~tg-~gv~~~t~GPG~~n~~ 79 (539)
T TIGR03393 1 YTVGDYLLDRLTDIGIDHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNAAYAADGYARCKG-AAALLTTFGVGELSAI 79 (539)
T ss_pred CcHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhCCCCcEeccCCcccHHHHhhhhhhhcC-ceEEEEecCccHHHHh
Confidence 378999999999999999999999999999999965 58999999999999999999999999 7999999999999999
Q ss_pred HHHhhcccCCCcEEEEecCCCCCc----------CccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCC
Q psy14416 88 GGMANAQINCWPMLVIGGSCAQDH----------EGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGK 157 (1065)
Q Consensus 88 ~gla~A~~~~~Pll~Isg~~~~~~----------~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~r 157 (1065)
+||++|+.+++|||+|+|++++.. .+.+.||++ .++++++|||+.++ +++++++.+++|++.|++++
T Consensus 80 ~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~q~~--~~~~~~itk~~~~~-~~~~~~~~i~~a~~~A~~~~ 156 (539)
T TIGR03393 80 NGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHF--YRMAAEVTVAQAVL-TEQNATAEIDRVITTALRER 156 (539)
T ss_pred hHHHHHhhccCCEEEEECCCCcchhhcCceeeeecCCCchHHH--HHHhhceEEEEEEe-ChhhhHHHHHHHHHHHHhcC
Confidence 999999999999999999988742 234456654 57999999998866 78889999999999998754
Q ss_pred Ccc
Q psy14416 158 PGR 160 (1065)
Q Consensus 158 pGP 160 (1065)
||
T Consensus 157 -gP 158 (539)
T TIGR03393 157 -RP 158 (539)
T ss_pred -CC
Confidence 67
No 113
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=2.5e-39 Score=365.09 Aligned_cols=269 Identities=22% Similarity=0.338 Sum_probs=226.8
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchh
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 84 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~ 84 (1065)
++.+|++++|+++|++.||+++||+||+.+++|+|.+.+ .++++|.|.||.+|+||||||||++| ++++++|.|.|..
T Consensus 1 ~~~~tvG~YL~~RL~qlgi~~iFGVPGDyNL~lLD~i~~~~~lrWvGn~NELNaaYAADGYaR~~G-i~alvTTfGVGEL 79 (557)
T COG3961 1 SSPITVGDYLFDRLAQLGIKSIFGVPGDYNLSLLDKIYSVPGLRWVGNANELNAAYAADGYARLNG-ISALVTTFGVGEL 79 (557)
T ss_pred CCceeHHHHHHHHHHhcCCceeeeCCCcccHHHHHHhhcCCCceeecccchhhhhhhhcchhhhcC-ceEEEEecccchh
Confidence 467899999999999999999999999999999999976 46999999999999999999999999 9999999999999
Q ss_pred hhhHHHhhcccCCCcEEEEecCCCCCcCccCC--Cc-----ccc-hhhhcccccceeccCCCcccHHHHHHHHHHHhhcC
Q psy14416 85 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGG--FQ-----ECP-QVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFG 156 (1065)
Q Consensus 85 N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~--~Q-----~~d-q~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~ 156 (1065)
.+++|++.+|.+++|||.|+|.+++....++. |+ +++ +.+|+++++.....+++.++++..++++++.+...
T Consensus 80 SA~NGIAGSYAE~vpVvhIvG~P~~~~q~~~~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~~A~~eIDrvi~~~~~~ 159 (557)
T COG3961 80 SALNGIAGSYAEHVPVVHIVGVPTTSAQASGLLLHHTLGDGDFKVFHRMSKEITCAQAMLTDINTAPREIDRVIRTALKQ 159 (557)
T ss_pred hhhcccchhhhhcCCEEEEEcCCCcchhhccchheeeccCCchHHHHHHhhhhhhHhhhcCCcchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999887655432 22 222 67999999999999999998999999999988753
Q ss_pred -CC------------------cc---------------------------------------------------------
Q psy14416 157 -KP------------------GR--------------------------------------------------------- 160 (1065)
Q Consensus 157 -rp------------------GP--------------------------------------------------------- 160 (1065)
|| +|
T Consensus 160 ~RPvYI~lP~dva~~~~~~p~~Pl~~~~~~sd~e~~~e~i~~i~~lI~~ak~p~ILad~~~~r~~~~~~~~~l~~~t~~p 239 (557)
T COG3961 160 RRPVYIGLPADVADLPIEAPLTPLDLQLKTSDPEALSEVIDTIAELINKAKKPVILADALVSRFGLEKELKKLINATGFP 239 (557)
T ss_pred cCCeEEEcchHHhcCcCCCCCCccccccCCCCHHHHHHHHHHHHHHHhccCCcEEecchhhhhhhhHHHHHHHHHhcCCC
Confidence 22 22
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 240 ~~~~pmGKg~idEs~P~y~GvY~G~~s~~~vre~vE~aD~il~iG~~ltD~~Tg~Ft~~~~~~~~i~~~~~~v~I~~~~f 319 (557)
T COG3961 240 VATLPMGKGVIDESHPNYLGVYNGKLSEPEVREAVESADLILTIGVLLTDFNTGGFTYQYKPANIIEIHPDSVKIKDAVF 319 (557)
T ss_pred eEEeecccccccccCCCeeeEEecccCCHHHHHHhhcCCEEEEeceEEeeccccceeeecCcccEEEeccCeeEeccccc
Confidence
Q ss_pred -------------------------------------------------------------cc-----------cccCCC
Q psy14416 161 -------------------------------------------------------------SL-----------LLNNLP 168 (1065)
Q Consensus 161 -------------------------------------------------------------~~-----------l~~~~p 168 (1065)
++ .....|
T Consensus 320 ~~l~m~~~L~~L~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~pLtq~~~w~~~~~fl~p~dviiaetGtS~FG~~~~~lP 399 (557)
T COG3961 320 TNLSMKDALQELAKKIDKRNLSAPPVAYPARTPPTPYPPANEPLTQEWLWNTVQNFLKPGDVIIAETGTSFFGALDIRLP 399 (557)
T ss_pred CCeeHHHHHHHHHHHhhhcccCCCCccCCCCCCCCCCCCCCCcccHHHHHHHHHhhCCCCCEEEEccccccccceeeecC
Confidence 00 111223
Q ss_pred c--cccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCee-----ee
Q psy14416 169 R--HRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGI-----YG 241 (1065)
Q Consensus 169 ~--~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy-----~~ 241 (1065)
. .++.+..||++||.+|+|+|+++| .|+||+|+++||||||||.||++|++|++++++++|+||+|| ..
T Consensus 400 ~~~~~i~Q~lWGSIG~t~pAalGa~~A----~~drR~IL~iGDGs~QlTvQEiStmiR~gl~p~ifvlNN~GYTIEr~IH 475 (557)
T COG3961 400 KGATFISQPLWGSIGYTLPAALGAALA----APDRRVILFIGDGSLQLTVQEISTMIRWGLKPIIFVLNNDGYTIERAIH 475 (557)
T ss_pred CCCeEEcccchhhcccccHhhhhhhhc----CCCccEEEEEcCchhhhhHHHHHHHHHcCCCcEEEEEcCCCcEEEehhc
Confidence 2 255566699999999999999999 599999999999999999999999999999999999999999 12
Q ss_pred cc-----ccchhhhhhhhhccCCCcccc-cCccHHHHHHHHHHh
Q psy14416 242 GF-----DEATYAWLDIIKKSNMSEDYD-EELSANQVIAQALKF 279 (1065)
Q Consensus 242 g~-----~~~~~~~~~l~~~~g~~~~~~-~~~~~~~~l~~~L~~ 279 (1065)
|+ +++.|||..+...++.+.... ...+.++.+..++..
T Consensus 476 g~~~~YNdI~~Wd~~~l~~afg~~~~~~~~~~~~~~~l~~~~~~ 519 (557)
T COG3961 476 GPTAPYNDIQSWDYTALPEAFGAKNGEAKFRATTGEELALALDV 519 (557)
T ss_pred CCCcCcccccccchhhhhhhcCCCCceEEEeecChHHHHHHHHH
Confidence 22 678999999999999876554 345566666665443
No 114
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=100.00 E-value=9.5e-39 Score=390.09 Aligned_cols=132 Identities=20% Similarity=0.231 Sum_probs=124.5
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 86 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~ 86 (1065)
.++++++|++.|+++||++|||+||+++.+|++++.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 8 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~~l~~~~~i~~v~~~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~~N~ 87 (568)
T PRK07449 8 NTLWAAVILEELTRLGVRHVVIAPGSRSTPLTLAAAEHPRLRLHTHFDERSAGFLALGLAKASKRPVAVIVTSGTAVANL 87 (568)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCcEEEeecCcccHHHHHHHHHHhhCCCEEEEECCccHHHhh
Confidence 3789999999999999999999999999999999965 479999999999999999999999999999999999999999
Q ss_pred hHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCc
Q psy14416 87 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNI 139 (1065)
Q Consensus 87 l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~ 139 (1065)
++||++|+.+++|||+|+|+++....+++.+|++||.+++++++++..+..+.
T Consensus 88 l~~i~~A~~~~~Pvl~IsG~~~~~~~~~~~~q~~d~~~~~~~~t~~~v~~~~~ 140 (568)
T PRK07449 88 YPAVIEAGLTGVPLIVLTADRPPELRDCGANQAIDQLGLFGSYPFTSLALPEP 140 (568)
T ss_pred hHHHHHHhhcCCcEEEEECCCCHHHhcCCCCceecHhhHhhhhhhhccCCCCC
Confidence 99999999999999999999999999999999999999999999776665443
No 115
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=100.00 E-value=6.6e-37 Score=313.92 Aligned_cols=162 Identities=31% Similarity=0.485 Sum_probs=156.3
Q ss_pred cHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccccc
Q psy14416 268 SANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 346 (1065)
Q Consensus 268 ~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~ 346 (1065)
+++++|++.|+++||+++||+||+.+.+|++++.+ .+|++|.++||++|+|||+||+|++|||++|++|+|||++|+++
T Consensus 1 ~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~ 80 (164)
T cd07039 1 TVADVIVETLENWGVKRVYGIPGDSINGLMDALRREGKIEFIQVRHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLN 80 (164)
T ss_pred CHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHH
Confidence 47899999999999999999999999999999976 68999999999999999999999999999999999999999999
Q ss_pred ccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 347 GMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 347 av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
|+++|+.+++|||+|+|+.+....+.+.+|++||.++++++|||+.++++++++++.+++|++.|++ ++|||||+||.|
T Consensus 81 ~l~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~-~~GPV~l~iP~d 159 (164)
T cd07039 81 GLYDAKRDRAPVLAIAGQVPTDELGTDYFQEVDLLALFKDVAVYNETVTSPEQLPELLDRAIRTAIA-KRGVAVLILPGD 159 (164)
T ss_pred HHHHHHhcCCCEEEEecCCcccccCCCCCcccCHHHHHHHhhcEEEEeCCHHHHHHHHHHHHHHHhc-CCCCEEEEeChH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988 569999999999
Q ss_pred hhhh
Q psy14416 427 LLAQ 430 (1065)
Q Consensus 427 v~~~ 430 (1065)
++.+
T Consensus 160 v~~~ 163 (164)
T cd07039 160 VQDA 163 (164)
T ss_pred Hhcc
Confidence 9764
No 116
>KOG1184|consensus
Probab=100.00 E-value=8.4e-36 Score=335.12 Aligned_cols=148 Identities=22% Similarity=0.317 Sum_probs=135.9
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
..++.+++|+++|.+.||+++||+||++++.|+|-|.. .++|++.|.||.+|+||||||||..| +++|++|.|.|...
T Consensus 2 ~~i~~G~YLf~RL~q~gvksvfgVPGDFNL~LLD~l~~~~~lrwvGn~NELNaAYAADGYAR~~G-i~a~VtTfgVGeLS 80 (561)
T KOG1184|consen 2 SPITLGEYLFRRLVQAGVKTVFGVPGDFNLSLLDKLYAVPGLRWVGNCNELNAAYAADGYARSKG-IGACVTTFGVGELS 80 (561)
T ss_pred CceeHHHHHHHHHHHcCCceeEECCCcccHHHHHHhhhcCCceeecccchhhhhhhhcchhhhcC-ceEEEEEeccchhh
Confidence 46789999999999999999999999999999999986 46999999999999999999999999 99999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCccCC--Cccc---c---hhhhcccccceeccCCCcccHHHHHHHHHHHhhc
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEGIGG--FQEC---P---QVELARPYCKYSARPPNIHLIGQHVEKAVRLSTF 155 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~--~Q~~---d---q~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~ 155 (1065)
+++|++.||.+++|||+|+|.+++...+.+. |+.+ | +.+|++.++.++..+++.+++++.+++|++.+..
T Consensus 81 AlNGIAGsYAE~vpVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~~~e~A~~~ID~aI~~~~~ 158 (561)
T KOG1184|consen 81 ALNGIAGAYAENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMINDIEDAPEQIDKAIRTALK 158 (561)
T ss_pred hhcccchhhhhcCCEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhcCHhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999988766543 2211 2 6799999999999999999999999999999875
No 117
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=100.00 E-value=9.7e-37 Score=323.70 Aligned_cols=274 Identities=26% Similarity=0.374 Sum_probs=245.9
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCC-CeEEEecChhhHHHHHHHHHHhc-CCcEEEEEeCCcch
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLT-KKPGVCLVVSGPGL 83 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~-i~~v~~rhE~~A~~mA~gyar~t-g~~gv~~~t~GPG~ 83 (1065)
|.+|..-|+-+-.|++.|++..||+||..+.|++.+|++.| |++|..||-.+|.+||.||.|.+ |.+|||+.||||.-
T Consensus 1 makmravdaav~vlekegi~~afgvpgaainp~ysalr~~g~i~hvlarhvegashmaegytra~~gnigvcigtsgpag 80 (592)
T COG3960 1 MAKMRAVDAAVYVLEKEGITTAFGVPGAAINPFYSALRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAG 80 (592)
T ss_pred CcchhhhhHHHHHHHhcCcceecCCCccccCHHHHHHHhcCcHHHHHHHHhcchhhhhcccccccCCceEEEecCCCCCc
Confidence 56788899999999999999999999999999999998765 99999999999999999999985 99999999999999
Q ss_pred hhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc---
Q psy14416 84 LHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR--- 160 (1065)
Q Consensus 84 ~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP--- 160 (1065)
++++|||++|..|++|+|+||||.|+....+..||..|..++.+|++||+..+..|..+|..+++||..+.++||||
T Consensus 81 tdmitglysa~adsipilcitgqaprarl~kedfqavdi~~ia~pv~kwavtv~epalvp~v~qkafhlmrs~rpgpvli 160 (592)
T COG3960 81 TDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKWAVTVREPALVPRVLQQAFHLMRSGRPGPVLI 160 (592)
T ss_pred cchhhhhhhcccccccEEEecCCCchhhhchhhhhhhhHHHhhhhhhhhhhhhcchhhhHHHHHHHHHHHhcCCCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 161 dlp~dvq~aeiefd~d~yepl~~~kpaatr~qaekalaml~~aerplivagggiinadaa~l~~efael~gvpviptlmg 240 (592)
T COG3960 161 DLPFDVQVAEIEFDPDMYEPLPVYKPAATRVQAEKALAMLIQAERPLIVAGGGVINADAAALLQEFAELTGVPVIPTLMG 240 (592)
T ss_pred ecccceEEEEEecCccccCcCCcCCchhHHHHHHHHHHHHhhccCcEEEecCceecccHHHHHHHHHHHcCCcccchhcc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 241 wg~ipddhplmagm~glqtshrygnatll~sd~vfgignrwanrhtgsv~vyt~gr~fihvdieptqigrvf~pdlgivs 320 (592)
T COG3960 241 WGCIPDDHPLMAGMVGLQTSHRYGNATLLASDMVFGIGNRWANRHTGSVEVYTEGRKFIHVDIEPTQIGRVFCPDLGIVS 320 (592)
T ss_pred ccccCCcchhhcccccceecccccchhhhhhhheeeccchhhhcccCceeeeecCceEEEEeccccccceeecCccceee
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 321 da~aal~~~ldva~ewk~agkl~~~~aw~~~cq~rkrtl~rkthfd~vp~kpqrvyeemn~~fgrd~~yvstiglsqia~ 400 (592)
T COG3960 321 DAKAALTLLLDVAQEWKKAGKLPCRKAWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGRDVCYVTTIGLSQIAA 400 (592)
T ss_pred chHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHhhcCCceeEEEeccHHHHhh
Confidence
Q ss_pred -cccccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCee
Q psy14416 161 -SLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGI 239 (1065)
Q Consensus 161 -~~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy 239 (1065)
.++....|++|+.|+..|++||.+|+|+|...+ .|+|.+|++.||-.|||.+.||+...++++|.++|++||.
T Consensus 401 aqflhv~~pr~wincgqagplgwtipaalgv~~a----dp~r~vvalsgdydfqfmieelavgaq~k~pyihv~vnna-- 474 (592)
T COG3960 401 AQFLHVFKPRHWINCGQAGPLGWTIPAALGVCAA----DPKRNVVAISGDYDFQFLIEELAVGAQFKIPYIHVLVNNA-- 474 (592)
T ss_pred hhhhhhcCCcceeecCccCCcccccchhhceeec----CCCCceEEeecCchHHHHHHHHhhhhcccCceEEEEecch--
Confidence 345557899999999999999999999999988 8999999999999999999999999999999999999999
Q ss_pred eeccccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCch
Q psy14416 240 YGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPV 293 (1065)
Q Consensus 240 ~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~ 293 (1065)
|.|++| +-|+. ...+++...-.-..-+..+.-+||+|+-.+.|-..
T Consensus 475 ylglir---qaqr~-----f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgc 520 (592)
T COG3960 475 YLGLIR---QAQRA-----FDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGC 520 (592)
T ss_pred HHHHHH---HHHhc-----CCccceeeehhhccCCccccccCccceeehhccCc
Confidence 899987 43332 22334333322233344588899999988777543
No 118
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=100.00 E-value=7.5e-36 Score=304.15 Aligned_cols=154 Identities=21% Similarity=0.268 Sum_probs=149.6
Q ss_pred HHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccccccccc
Q psy14416 272 VIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMAN 350 (1065)
Q Consensus 272 ~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~e 350 (1065)
+|++.|+++||+++||+||+.+.+|++++.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+++|+++
T Consensus 2 ~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl~~ 81 (162)
T cd07037 2 ALVEELKRLGVRDVVISPGSRSAPLALAAAEHPEFRLHVRVDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVVE 81 (162)
T ss_pred hHHHHHHHCCCCEEEECCCcchHHHHHHHHhCCCceEEeccChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHHHH
Confidence 6899999999999999999999999999955 589999999999999999999999999999999999999999999999
Q ss_pred ccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhh------HHHHHHHHHHHhhcCCCCEEEEecC
Q psy14416 351 AQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHL------IGQHVEKAVRLSTFGKPGVSYLDFP 424 (1065)
Q Consensus 351 A~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~------i~~~i~~A~~~A~~~~~GPV~L~iP 424 (1065)
|+.+++|||+|+|+.+...++++.+|++||..+|+++|||+.+++++++ +++.+++|++.|+++|||||||+||
T Consensus 82 A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 82 AYYSGVPLLVLTADRPPELRGTGANQTIDQVGLFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred HHhcCCCEEEEECCCCHHhcCCCCCcccchhhhccceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 9999999999999999999899999999999999999999999999999 9999999999999999999999999
Q ss_pred h
Q psy14416 425 A 425 (1065)
Q Consensus 425 ~ 425 (1065)
.
T Consensus 162 ~ 162 (162)
T cd07037 162 F 162 (162)
T ss_pred C
Confidence 4
No 119
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=100.00 E-value=1.2e-34 Score=386.10 Aligned_cols=148 Identities=18% Similarity=0.200 Sum_probs=139.7
Q ss_pred ccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhh
Q psy14416 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 87 (1065)
Q Consensus 9 ~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l 87 (1065)
+.-+++|++.|+++||+++||+||+++++|++++.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 301 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~pL~dAl~~~~~i~~i~~rhErsAafmAdGyAR~TgkpgV~i~TsGPG~tN~l 380 (1655)
T PLN02980 301 AVWASLIIEECTRLGLTYFCVAPGSRSSPLAIAASNHPLTTCIACFDERSLAFHALGYARGSLKPAVVITSSGTAVSNLL 380 (1655)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHhCCCCeEEeccCcchHHHHHHHHHHHhCCCEEEEEeCcHHHHHHH
Confidence 346899999999999999999999999999999965 4699999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccH------HHHHHHHHHHhhcC
Q psy14416 88 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLI------GQHVEKAVRLSTFG 156 (1065)
Q Consensus 88 ~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i------~~~l~~A~~~A~~~ 156 (1065)
+|+++|+.+++|||+|||+++....+++.+|++||.+++++++||++++.+++++ ++.+++|++.|+++
T Consensus 381 ~av~eA~~d~vPlLvItgd~p~~~~~~ga~Q~iDq~~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~ 455 (1655)
T PLN02980 381 PAVVEASQDFVPLLLLTADRPPELQDAGANQAINQVNHFGSFVRFFFNLPPPTDLIPARMVLTTLDSAVHWATSS 455 (1655)
T ss_pred HHHHHHhhcCCCEEEEeCCCCHHHhcCCCCcccchhhHHHhhhheeecCCCccchhhHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999983 58889888887664
No 120
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=100.00 E-value=1.1e-34 Score=300.43 Aligned_cols=169 Identities=35% Similarity=0.588 Sum_probs=158.9
Q ss_pred ccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccccc
Q psy14416 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 345 (1065)
Q Consensus 267 ~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~ 345 (1065)
|+++++|++.|+++||+++||+||+.+.+|+++++++ ++++|.++||++|+|||+||+|++|||+||++|+|||++|++
T Consensus 1 mt~~~~l~~~L~~~Gv~~vfgvpG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~ 80 (172)
T PF02776_consen 1 MTGAEALAEALKANGVTHVFGVPGSGNLPLLDALEKSPGIRFIPVRHEQGAAFMADGYARATGRPGVVIVTSGPGATNAL 80 (172)
T ss_dssp EEHHHHHHHHHHHTT-SEEEEE--GGGHHHHHHHHHTTTSEEEE-SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTH
T ss_pred CcHHHHHHHHHHHCCCeEEEEEeChhHhHHHHHhhhhcceeeecccCcchhHHHHHHHHHhhccceEEEeecccchHHHH
Confidence 5799999999999999999999999999999999887 799999999999999999999999999999999999999999
Q ss_pred cccccccccCcceEeecCCCccCCCCCCCCC-ccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecC
Q psy14416 346 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQ-ECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424 (1065)
Q Consensus 346 ~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q-~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP 424 (1065)
+++++|+.+++|||+|+|+++....+++.+| ++||.++|++++||+.++.+++++++.+++|++.|.++++|||||+||
T Consensus 81 ~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~~d~~~~~~~~~k~~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip 160 (172)
T PF02776_consen 81 TGLANAYADRIPVLVITGQRPSAGEGRGAFQQEIDQQSLFRPVTKWSYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIP 160 (172)
T ss_dssp HHHHHHHHTT-EEEEEEEESSGGGTTTTSTTSSTHHHHHHGGGSSEEEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEE
T ss_pred HHHhhcccceeeEEEEecccchhhhcccccccchhhcchhccccchhcccCCHHHHHHHHHHHHHHhccCCCccEEEEcC
Confidence 9999999999999999999999999999999 899999999999999999999999999999999998899999999999
Q ss_pred hhhhhhccccc
Q psy14416 425 ANLLAQRINQS 435 (1065)
Q Consensus 425 ~Dv~~~~~~~~ 435 (1065)
.|++.++++.+
T Consensus 161 ~dv~~~~~~~~ 171 (172)
T PF02776_consen 161 QDVQEAEVDEP 171 (172)
T ss_dssp HHHHTSEEECT
T ss_pred hhHhhCccCCC
Confidence 99999988653
No 121
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=100.00 E-value=3.7e-34 Score=293.59 Aligned_cols=159 Identities=32% Similarity=0.485 Sum_probs=151.4
Q ss_pred cHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhH
Q psy14416 10 SANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 88 (1065)
Q Consensus 10 t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~ 88 (1065)
|++|+|++.|+++||+++||+||+++++|++++.+ .+|++|.+|||++|+|||+||+|++|||+||++|+|||++|+++
T Consensus 1 ~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~ 80 (164)
T cd07039 1 TVADVIVETLENWGVKRVYGIPGDSINGLMDALRREGKIEFIQVRHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLN 80 (164)
T ss_pred CHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHH
Confidence 57999999999999999999999999999999976 68999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcccccccCCC
Q psy14416 89 GMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLP 168 (1065)
Q Consensus 89 gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP~~l~~~~p 168 (1065)
|+++|+.|++|||+|+|+.++...+++.+|++||.++++++|||+.++++++++++.+++|++.|.+ ++||+++ ..|
T Consensus 81 ~l~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~-~~GPV~l--~iP 157 (164)
T cd07039 81 GLYDAKRDRAPVLAIAGQVPTDELGTDYFQEVDLLALFKDVAVYNETVTSPEQLPELLDRAIRTAIA-KRGVAVL--ILP 157 (164)
T ss_pred HHHHHHhcCCCEEEEecCCcccccCCCCCcccCHHHHHHHhhcEEEEeCCHHHHHHHHHHHHHHHhc-CCCCEEE--EeC
Confidence 9999999999999999999999989999999999999999999999999999999999999999998 5699998 445
Q ss_pred ccc
Q psy14416 169 RHR 171 (1065)
Q Consensus 169 ~~~ 171 (1065)
.+.
T Consensus 158 ~dv 160 (164)
T cd07039 158 GDV 160 (164)
T ss_pred hHH
Confidence 443
No 122
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=100.00 E-value=3.2e-34 Score=292.20 Aligned_cols=151 Identities=21% Similarity=0.249 Sum_probs=146.5
Q ss_pred HHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhHHHhh
Q psy14416 14 VIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMAN 92 (1065)
Q Consensus 14 ~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~gla~ 92 (1065)
+|++.|+++||+++||+||+++.+|++++.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+++|+++
T Consensus 2 ~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl~~ 81 (162)
T cd07037 2 ALVEELKRLGVRDVVISPGSRSAPLALAAAEHPEFRLHVRVDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVVE 81 (162)
T ss_pred hHHHHHHHCCCCEEEECCCcchHHHHHHHHhCCCceEEeccChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHHHH
Confidence 6899999999999999999999999999965 589999999999999999999999999999999999999999999999
Q ss_pred cccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCccc------HHHHHHHHHHHhhcCCCcccccc
Q psy14416 93 AQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHL------IGQHVEKAVRLSTFGKPGRSLLL 164 (1065)
Q Consensus 93 A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~------i~~~l~~A~~~A~~~rpGP~~l~ 164 (1065)
|+.+++|||+|+|+.+....+++.+|++||.+++++++||+.+++++++ +++.+++|++.|.++||||+++.
T Consensus 82 A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~ 159 (162)
T cd07037 82 AYYSGVPLLVLTADRPPELRGTGANQTIDQVGLFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLN 159 (162)
T ss_pred HHhcCCCEEEEECCCCHHhcCCCCCcccchhhhccceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEe
Confidence 9999999999999999998899999999999999999999999999999 99999999999999999999974
No 123
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=99.98 E-value=2e-32 Score=280.40 Aligned_cols=153 Identities=22% Similarity=0.326 Sum_probs=142.6
Q ss_pred HHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccccccccc
Q psy14416 271 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMA 349 (1065)
Q Consensus 271 ~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~ 349 (1065)
++|++.|+++||+++||+||+.+.+|.+++.+. +|++|.++||++|+|||+||+|+| +|+||++|+|||++|+++||+
T Consensus 1 ~~l~~~L~~~Gi~~vFg~pG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mA~gyar~t-~~gv~~~t~GpG~~n~~~gl~ 79 (162)
T cd07038 1 EYLLERLKQLGVKHVFGVPGDYNLPLLDAIEENPGLRWVGNCNELNAGYAADGYARVK-GLGALVTTYGVGELSALNGIA 79 (162)
T ss_pred CHHHHHHHHcCCCEEEEeCCccHHHHHHHHhhcCCceEEeeCCHHHHHHHHHHHHHhh-CCEEEEEcCCccHHHHHHHHH
Confidence 478999999999999999999999999999654 899999999999999999999999 899999999999999999999
Q ss_pred cccccCcceEeecCCCccCCCCCCCC-------Ccc-ChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEE
Q psy14416 350 NAQINCWPMLVIGGSCAQDHEGIGGF-------QEC-PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYL 421 (1065)
Q Consensus 350 eA~~~~vPLlvItg~~p~~~~g~ga~-------Q~i-dQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L 421 (1065)
+|+.+++|||+|+|+.+....+++.. |++ ||.++++++|||+.++++++++++.+++|++.|.+++ |||||
T Consensus 80 ~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~i~~~v~~A~~~a~s~~-gPV~l 158 (162)
T cd07038 80 GAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLKMFEEITCAAARLTDPENAAEEIDRVLRTALRES-RPVYI 158 (162)
T ss_pred HHHHcCCCEEEEecCCCccccccccceeecccccchHHHHHHHHhheeEEEEeCCHHHHHHHHHHHHHHHHHCC-CCEEE
Confidence 99999999999999999887766552 334 6899999999999999999999999999999999986 99999
Q ss_pred ecCh
Q psy14416 422 DFPA 425 (1065)
Q Consensus 422 ~iP~ 425 (1065)
+||.
T Consensus 159 ~iP~ 162 (162)
T cd07038 159 EIPR 162 (162)
T ss_pred EccC
Confidence 9994
No 124
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=99.97 E-value=1.5e-31 Score=315.92 Aligned_cols=218 Identities=19% Similarity=0.186 Sum_probs=176.3
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhHH
Q psy14416 11 ANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGG 89 (1065)
Q Consensus 11 ~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~g 89 (1065)
.+++|++.|+++||++|||+||+.+.+|++++.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+++|
T Consensus 2 ~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~g 81 (432)
T TIGR00173 2 WASVLVEELVRLGVRHVVISPGSRSTPLALAAAEHPRLRVHVHIDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPA 81 (432)
T ss_pred hHHHHHHHHHHcCCCEEEECCCcccHHHHHHHHhCCCcEEEEecCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHH
Confidence 3789999999999999999999999999999964 579999999999999999999999999999999999999999999
Q ss_pred HhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCccc------HHHHHHHHHHHhhcCCCccccc
Q psy14416 90 MANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHL------IGQHVEKAVRLSTFGKPGRSLL 163 (1065)
Q Consensus 90 la~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~------i~~~l~~A~~~A~~~rpGP~~l 163 (1065)
|++|+.+++|||+|+|++++...+++.+|++||.+++++++||+.+++++++ +++.+++|++.|+++||||+++
T Consensus 82 l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l 161 (432)
T TIGR00173 82 VIEASYSGVPLIVLTADRPPELRGCGANQTIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHI 161 (432)
T ss_pred HHHhcccCCcEEEEeCCCCHHHhCCCCCcccchhhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEE
Confidence 9999999999999999999999999999999999999999999999999998 8999999999999999999886
Q ss_pred ccCCCccccc-c-------c--------cc-cCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhh-hc
Q psy14416 164 LNNLPRHRLD-A-------G--------TF-GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLV-RY 225 (1065)
Q Consensus 164 ~~~~p~~~l~-~-------~--------~~-gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~v-r~ 225 (1065)
.. |.+... . . .. .......+..+... + .....-||+++++|.|...-...+|..++ ++
T Consensus 162 ~i--P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~-~~l~~AkrPvi~~G~g~~~~a~~~l~~lae~~ 237 (432)
T TIGR00173 162 NV--PFREPLYPDPLLQPLQPWLRSGVPTVTTGPPVLDPESLDEL-W-DRLNQAKRGVIVAGPLPPAEDAEALAALAEAL 237 (432)
T ss_pred eC--CCCCCCCCCCcccccccccccccccccCCCCCCChhhHHHH-H-HHHhhcCCcEEEEcCCCcHHHHHHHHHHHHhC
Confidence 43 222210 0 0 00 00001111222211 1 12235578888899998642345555444 68
Q ss_pred CCCEEEE
Q psy14416 226 RLPVILV 232 (1065)
Q Consensus 226 ~lpiviv 232 (1065)
++|++.-
T Consensus 238 ~~PV~tt 244 (432)
T TIGR00173 238 GWPLLAD 244 (432)
T ss_pred CCeEEEe
Confidence 8886653
No 125
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=99.97 E-value=9.7e-32 Score=278.46 Aligned_cols=156 Identities=37% Similarity=0.571 Sum_probs=147.2
Q ss_pred ccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhh
Q psy14416 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 87 (1065)
Q Consensus 9 ~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l 87 (1065)
||++|+|++.|+++||+++||+||+.+.+|+++|.+. ++++|.+|||++|++||+||+|++|||+||++|+|||++|++
T Consensus 1 mt~~~~l~~~L~~~Gv~~vfgvpG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~ 80 (172)
T PF02776_consen 1 MTGAEALAEALKANGVTHVFGVPGSGNLPLLDALEKSPGIRFIPVRHEQGAAFMADGYARATGRPGVVIVTSGPGATNAL 80 (172)
T ss_dssp EEHHHHHHHHHHHTT-SEEEEE--GGGHHHHHHHHHTTTSEEEE-SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTH
T ss_pred CcHHHHHHHHHHHCCCeEEEEEeChhHhHHHHHhhhhcceeeecccCcchhHHHHHHHHHhhccceEEEeecccchHHHH
Confidence 7999999999999999999999999999999999987 799999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCcEEEEecCCCCCcCccCCCc-ccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcccccc
Q psy14416 88 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQ-ECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLL 164 (1065)
Q Consensus 88 ~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q-~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP~~l~ 164 (1065)
++|++|+.+++|||+|+|+.+....+++.+| +.||.+++++++||++++++++++++.+++|++.|..+++||+++.
T Consensus 81 ~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~~d~~~~~~~~~k~~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ 158 (172)
T PF02776_consen 81 TGLANAYADRIPVLVITGQRPSAGEGRGAFQQEIDQQSLFRPVTKWSYRVTSPDDLPEALDRAFRAATSGRPGPVYLE 158 (172)
T ss_dssp HHHHHHHHTT-EEEEEEEESSGGGTTTTSTTSSTHHHHHHGGGSSEEEEECSGGGHHHHHHHHHHHHHHCSTSEEEEE
T ss_pred HHHhhcccceeeEEEEecccchhhhcccccccchhhcchhccccchhcccCCHHHHHHHHHHHHHHhccCCCccEEEE
Confidence 9999999999999999999999999999999 8999999999999999999999999999999999999999999873
No 126
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=99.97 E-value=4.5e-31 Score=270.39 Aligned_cols=150 Identities=21% Similarity=0.287 Sum_probs=139.7
Q ss_pred HHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhHHHh
Q psy14416 13 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMA 91 (1065)
Q Consensus 13 e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~gla 91 (1065)
|+|++.|+++||++|||+||+.+++|+++|.+. +|++|.+|||++|++||+||+|+| ||+||++|+|||++|+++||+
T Consensus 1 ~~l~~~L~~~Gi~~vFg~pG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mA~gyar~t-~~gv~~~t~GpG~~n~~~gl~ 79 (162)
T cd07038 1 EYLLERLKQLGVKHVFGVPGDYNLPLLDAIEENPGLRWVGNCNELNAGYAADGYARVK-GLGALVTTYGVGELSALNGIA 79 (162)
T ss_pred CHHHHHHHHcCCCEEEEeCCccHHHHHHHHhhcCCceEEeeCCHHHHHHHHHHHHHhh-CCEEEEEcCCccHHHHHHHHH
Confidence 579999999999999999999999999999654 799999999999999999999999 899999999999999999999
Q ss_pred hcccCCCcEEEEecCCCCCcCccCCC-------ccc-chhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCccccc
Q psy14416 92 NAQINCWPMLVIGGSCAQDHEGIGGF-------QEC-PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLL 163 (1065)
Q Consensus 92 ~A~~~~~Pll~Isg~~~~~~~g~~~~-------Q~~-dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP~~l 163 (1065)
+|+.+++|||+|+|+.+....+++.. |++ ||.+++++++||++++++++++++.+++|++.|.++| ||+++
T Consensus 80 ~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~i~~~v~~A~~~a~s~~-gPV~l 158 (162)
T cd07038 80 GAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLKMFEEITCAAARLTDPENAAEEIDRVLRTALRES-RPVYI 158 (162)
T ss_pred HHHHcCCCEEEEecCCCccccccccceeecccccchHHHHHHHHhheeEEEEeCCHHHHHHHHHHHHHHHHHCC-CCEEE
Confidence 99999999999999999887776542 334 5899999999999999999999999999999999987 99998
Q ss_pred c
Q psy14416 164 L 164 (1065)
Q Consensus 164 ~ 164 (1065)
.
T Consensus 159 ~ 159 (162)
T cd07038 159 E 159 (162)
T ss_pred E
Confidence 4
No 127
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=99.97 E-value=2.8e-30 Score=262.90 Aligned_cols=155 Identities=40% Similarity=0.615 Sum_probs=150.5
Q ss_pred HHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccccccccc
Q psy14416 271 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMAN 350 (1065)
Q Consensus 271 ~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~e 350 (1065)
++|++.|+++||+++||+||+.+.++.+++.++++++|.++||++|++||+||+|++|||++|++|+|||++|+++++.+
T Consensus 1 ~~i~~~L~~~Gv~~vfg~pg~~~~~l~~~~~~~~~~~i~~~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~ 80 (155)
T cd07035 1 DALVEALKAEGVDHVFGVPGGAILPLLDALARSGIRYILVRHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLAN 80 (155)
T ss_pred CHHHHHHHHcCCCEEEECCCCchHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHH
Confidence 47899999999999999999999999999987789999999999999999999999999999999999999999999999
Q ss_pred ccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecCh
Q psy14416 351 AQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPA 425 (1065)
Q Consensus 351 A~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~ 425 (1065)
|+.+++|||+|+++++....+++.+|+.||.++++++|||+.++++++++.+.+++|++.|.++|+|||||++|.
T Consensus 81 A~~~~~Pll~i~~~~~~~~~~~~~~q~~d~~~~~~~~~~~~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip~ 155 (155)
T cd07035 81 AYLDSIPLLVITGQRPTAGEGRGAFQEIDQVALFRPITKWAYRVTSPEEIPEALRRAFRIALSGRPGPVALDLPK 155 (155)
T ss_pred HHhhCCCEEEEeCCCccccccCCcccccCHHHHHHHHhceEEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEecC
Confidence 999999999999999999999999999999999999999999999999999999999999999989999999984
No 128
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=99.95 E-value=2.5e-28 Score=248.58 Aligned_cols=152 Identities=39% Similarity=0.592 Sum_probs=147.4
Q ss_pred HHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhHHHhh
Q psy14416 13 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMAN 92 (1065)
Q Consensus 13 e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~gla~ 92 (1065)
|+|++.|+++||+++||+||+.+.++++++.+.++++|.++||.+|++||+||+|.+||+++|++|+|||++|++++|.+
T Consensus 1 ~~i~~~L~~~Gv~~vfg~pg~~~~~l~~~~~~~~~~~i~~~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~ 80 (155)
T cd07035 1 DALVEALKAEGVDHVFGVPGGAILPLLDALARSGIRYILVRHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLAN 80 (155)
T ss_pred CHHHHHHHHcCCCEEEECCCCchHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHH
Confidence 57999999999999999999999999999987789999999999999999999999999999999999999999999999
Q ss_pred cccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcccccc
Q psy14416 93 AQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLL 164 (1065)
Q Consensus 93 A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP~~l~ 164 (1065)
|+.+++|||+|+|+++....++..+|+.||.+++++++||+.++++++++++.+++|++.|.++|+||+++.
T Consensus 81 A~~~~~Pll~i~~~~~~~~~~~~~~q~~d~~~~~~~~~~~~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ 152 (155)
T cd07035 81 AYLDSIPLLVITGQRPTAGEGRGAFQEIDQVALFRPITKWAYRVTSPEEIPEALRRAFRIALSGRPGPVALD 152 (155)
T ss_pred HHhhCCCEEEEeCCCccccccCCcccccCHHHHHHHHhceEEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999989998874
No 129
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=99.95 E-value=2.8e-27 Score=261.93 Aligned_cols=232 Identities=25% Similarity=0.261 Sum_probs=202.7
Q ss_pred ccccHHHHHHHHHHhCCCc---------EEEEeCC-CChHHHHHHHHhC--CCeEEEecChhhHHHHHHHHHHhcCCcEE
Q psy14416 7 EELSANQVIAQALKFQGIE---------YVFGIVG-IPVIELAMACQQE--GIHYIGMRNEQAACYAAQAIGYLTKKPGV 74 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~---------~vFgvpG-~~~~~l~~al~~~--~i~~v~~rhE~~A~~mA~gyar~tg~~gv 74 (1065)
.++|.+++|+++|.++-+. -||++.| +++..+-+||.+. .+..+..+|||+.+++|.+|+|...|-.+
T Consensus 5 vRlT~aQAlvrfL~~Q~~~~ge~~p~~~GvfaIFGHGNVaGiGeAL~~~~~~l~~yqg~NEQgMAhaAiayaKq~~Rrr~ 84 (617)
T COG3962 5 VRLTMAQALVRFLAQQMTEIGEIVPFVGGVFAIFGHGNVAGIGEALYQVRDHLPTYQGHNEQGMAHAAIAYAKQHRRRRI 84 (617)
T ss_pred ehhHHHHHHHHHHHhhhhhhcccccccceeeEEecCcchhhhHHHHHhCccccchhhcccHhHHHHHHHHHHHHHhhcee
Confidence 4689999999999986433 3888888 6778999999753 39999999999999999999999866554
Q ss_pred --EEEeCCcchhhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchh--------hhcccccceeccCCCcccHHH
Q psy14416 75 --CLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQV--------ELARPYCKYSARPPNIHLIGQ 144 (1065)
Q Consensus 75 --~~~t~GPG~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~--------~l~~~itk~~~~v~~~~~i~~ 144 (1065)
|..+.|||++|++|+.+.|+.+++|+|+|.|++.........+|.+.|. +.|+|+++|..|+++||++-.
T Consensus 85 ~A~tsSiGPGA~NmvTaAalA~~NrlPvLllPgDvfA~R~PDPVLQQ~E~~~d~~it~NDcfrPVSRYfDRItRPEQl~s 164 (617)
T COG3962 85 YAVTSSIGPGAANMVTAAALAHVNRLPVLLLPGDVFATRQPDPVLQQLEQFGDGTITTNDCFRPVSRYFDRITRPEQLMS 164 (617)
T ss_pred eEEecccCCcHHHHHHHHHHHHhhcCceEeeccchhcccCCChHHHhhhccccCceecccccccHHHHhhhcCCHHHHHH
Confidence 4446699999999999999999999999999999888777777766543 689999999999999999999
Q ss_pred HHHHHHHHhhcC-CCcc---------------------------------------------------------------
Q psy14416 145 HVEKAVRLSTFG-KPGR--------------------------------------------------------------- 160 (1065)
Q Consensus 145 ~l~~A~~~A~~~-rpGP--------------------------------------------------------------- 160 (1065)
.+.+|++.++.. ..||
T Consensus 165 al~rA~~VmTDPA~~GpvTl~l~QDVq~eA~Dyp~~FF~~rv~~~rR~~Pd~~eL~~A~~lik~ak~PlIvaGGGv~YS~ 244 (617)
T COG3962 165 ALPRAMRVMTDPADCGPVTLALCQDVQAEAYDYPESFFEKRVWRIRRPPPDERELADAAALIKSAKKPLIVAGGGVLYSG 244 (617)
T ss_pred HHHHHHHHhCChhhcCceEEEechhhhhhhcCCcHHhhhhhhhhccCCCCCHHHHHHHHHHHHhcCCCEEEecCceeech
Confidence 999999998762 2355
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 245 A~~~L~af~E~~~iPv~ETQaGKsal~~dhplNlG~vGvTGt~AAN~~A~~ADlVigiGTR~~DFTTgS~alF~~~~~k~ 324 (617)
T COG3962 245 AREALRAFAETHGIPVVETQAGKSALAWDHPLNLGGVGVTGTLAANRAAEEADLVIGIGTRLQDFTTGSKALFKNPGVKF 324 (617)
T ss_pred HHHHHHHHHHhcCCceEeccCCcccccccCccccccccccchHHHHhhhhhcCEEEEecccccccccccHHHhcCCCceE
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 325 l~lNV~~~da~K~~a~~lvaDAr~~L~~L~~~L~g~~~~~~w~~~~~~~~~~w~~~~~~~~a~~~~lnt~ptq~~vigav 404 (617)
T COG3962 325 LNLNVQPFDAYKHDALPLVADARAGLEALSEALGGYRTAAGWTDERERLKAAWDAEADAPTAKNHFLNTLPTQTQVIGAV 404 (617)
T ss_pred EEeecccccccccccceehhHHHHHHHHHHHHhcccccchhHHHHHHHhhhhhhhhcccccccccccccCccchhHHHHH
Confidence
Q ss_pred ----------------------cccccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHH
Q psy14416 161 ----------------------SLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGME 218 (1065)
Q Consensus 161 ----------------------~~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~e 218 (1065)
.+|....|..+..+.+|+||||.+..++|+|++ .|+|.|++++|||||+|.-.|
T Consensus 405 ~~~~~~~svvvcAAGsLPGdLhkLW~~~~p~~YH~EYgfSCMGYEiaG~lG~K~a----~pdreV~vmVGDGSymMlnSE 480 (617)
T COG3962 405 QRTISDDSVVVCAAGSLPGDLHKLWRAGVPGTYHLEYGFSCMGYEIAGGLGAKAA----EPDREVYVMVGDGSYMMLNSE 480 (617)
T ss_pred HhhcCCCcEEEEeCCCCcHHHHHHhccCCCCceeeeecccccccccccccccccC----CCCCeEEEEEcccchhhhhHH
Confidence 335567788888888999999999999999987 799999999999999999999
Q ss_pred HHHhhhcCCCEEEEEEcCCeeeeccc
Q psy14416 219 LETLVRYRLPVILVIVNNNGIYGGFD 244 (1065)
Q Consensus 219 L~t~vr~~lpivivV~NN~gy~~g~~ 244 (1065)
|.|++.++.+|++++++|+|| |.+
T Consensus 481 L~Tsv~~g~Ki~Vvl~DN~Gy--GCI 504 (617)
T COG3962 481 LATSVMLGKKIIVVLLDNRGY--GCI 504 (617)
T ss_pred HHHHHHcCCeEEEEEECCCCc--chh
Confidence 999999999999999999999 654
No 130
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=99.94 E-value=3.8e-26 Score=233.82 Aligned_cols=150 Identities=17% Similarity=0.106 Sum_probs=140.0
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-----CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 11 ANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 11 ~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-----~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
++|+|++.|+++||+++||+||+.+.++++++.+ .++++|.+|||++|++||+||+|.+++ +|++++|||++|
T Consensus 1 g~e~i~~~L~~~gv~~vfg~PG~~~~~~~~~l~~~~~~~~~i~~i~~~~E~~A~~~A~g~~r~~~~--v~~~~~gpG~~n 78 (160)
T cd07034 1 GNEAVARGALAAGVDVVAAYPITPSTEIAETLAKAVLGELGGVVVQAESEHAAAEAAIGASAAGAR--AMTATSGPGLNL 78 (160)
T ss_pred ChHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHHHHhccCCCcEEEEeCCHHHHHHHHHHHHhhCCc--EEEeeCcchHHH
Confidence 4799999999999999999999999999999963 579999999999999999999997766 999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCc--cCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCccccc
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEG--IGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLL 163 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g--~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP~~l 163 (1065)
++++|++|+.+++|||+|+|+.+....+ ...+|++|+..++++ +||+.++.+++++++.+++|++.|.++| +|+++
T Consensus 79 ~~~~l~~a~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~a~~~~-~Pv~l 156 (160)
T cd07034 79 MAEALYLAAGAELPLVIVVAQRPGPSTGLPKPDQSDLMAARYGGH-PWPVLAPSSVQEAFDLALEAFELAEKYR-LPVIV 156 (160)
T ss_pred HHHHHHHHHhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHHHhCCC-CEEEEeCCCHHHHHHHHHHHHHHHHHhC-CCEEE
Confidence 9999999999999999999999988776 556788999999999 9999999999999999999999999998 89876
Q ss_pred c
Q psy14416 164 L 164 (1065)
Q Consensus 164 ~ 164 (1065)
.
T Consensus 157 ~ 157 (160)
T cd07034 157 L 157 (160)
T ss_pred E
Confidence 4
No 131
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=99.93 E-value=8e-26 Score=231.40 Aligned_cols=151 Identities=16% Similarity=0.072 Sum_probs=140.7
Q ss_pred HHHHHHHHHHhcCceEEEeecCCchhhhHHHhh-----cCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 269 ANQVIAQALKFQGIEYVFGIVGIPVIELAMACQ-----QEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 269 ~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~-----~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
++++|++.|+++||+++||+||+.+.++.+++. +.++++|.++||++|++||+||+|.+++ +|++|+|||++|
T Consensus 1 g~e~i~~~L~~~gv~~vfg~PG~~~~~~~~~l~~~~~~~~~i~~i~~~~E~~A~~~A~g~~r~~~~--v~~~~~gpG~~n 78 (160)
T cd07034 1 GNEAVARGALAAGVDVVAAYPITPSTEIAETLAKAVLGELGGVVVQAESEHAAAEAAIGASAAGAR--AMTATSGPGLNL 78 (160)
T ss_pred ChHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHHHHhccCCCcEEEEeCCHHHHHHHHHHHHhhCCc--EEEeeCcchHHH
Confidence 368999999999999999999999999999995 3579999999999999999999997666 999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCC--CCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEE
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEG--IGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYL 421 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g--~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L 421 (1065)
+++++++|+.+++|||+|+|+++....+ ...+|++||..++++ +||+.++.+++++++.+++|++.|.+++ |||+|
T Consensus 79 ~~~~l~~a~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~a~~~~-~Pv~l 156 (160)
T cd07034 79 MAEALYLAAGAELPLVIVVAQRPGPSTGLPKPDQSDLMAARYGGH-PWPVLAPSSVQEAFDLALEAFELAEKYR-LPVIV 156 (160)
T ss_pred HHHHHHHHHhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHHHhCCC-CEEEEeCCCHHHHHHHHHHHHHHHHHhC-CCEEE
Confidence 9999999999999999999999998776 556788999999999 9999999999999999999999999888 89998
Q ss_pred ec
Q psy14416 422 DF 423 (1065)
Q Consensus 422 ~i 423 (1065)
-+
T Consensus 157 ~~ 158 (160)
T cd07034 157 LS 158 (160)
T ss_pred Ec
Confidence 64
No 132
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.92 E-value=1.8e-24 Score=247.02 Aligned_cols=209 Identities=22% Similarity=0.232 Sum_probs=160.3
Q ss_pred CCcEEEEeCCCChHHHHHHHHh--CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEE-eCCcc-hhhhhHHHhhcccCCC
Q psy14416 23 GIEYVFGIVGIPVIELAMACQQ--EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLV-VSGPG-LLHTFGGMANAQINCW 98 (1065)
Q Consensus 23 GV~~vFgvpG~~~~~l~~al~~--~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~-t~GPG-~~N~l~gla~A~~~~~ 98 (1065)
||++++|||++...+|++.+.+ ..+++|.+.||..|+.+|.||+..|||.+++++ +||.| +.|.+++|++....++
T Consensus 1 gi~~~~gvP~s~l~~~~~~~~~~~~~~~~i~~~~E~~av~iaaG~~latG~~~~v~mQnSGlGn~vN~l~SL~~~~~y~i 80 (361)
T TIGR03297 1 GFDFFSGVPDSLLKPFCNYITDNNRDLRHVIAANEGAAVGLAAGAYLATGKRAAVYMQNSGLGNAVNPLTSLADTEVYDI 80 (361)
T ss_pred CceEEEeCcHHHHHHHHHHHHhcCCCceEEecCCchHHHHHHHHHHHhcCCccEEEEecCchhhhhhHHHhhccccccCc
Confidence 7999999999999999999973 369999999999999999999999999888886 78999 8999999999999999
Q ss_pred cEEEEecCCCCCcCccCCCcccchh----hhccccc-ceeccCCCcccHHHHHHHHHHHhhcCC-C--------------
Q psy14416 99 PMLVIGGSCAQDHEGIGGFQECPQV----ELARPYC-KYSARPPNIHLIGQHVEKAVRLSTFGK-P-------------- 158 (1065)
Q Consensus 99 Pll~Isg~~~~~~~g~~~~Q~~dq~----~l~~~it-k~~~~v~~~~~i~~~l~~A~~~A~~~r-p-------------- 158 (1065)
|+|+|.|.+..... ....|...|- ++++.+- +|...-++.++....+++|++.+.... |
T Consensus 81 P~l~~i~~RG~~g~-~depqh~~~G~~t~~lL~~~~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~~~~~~ 159 (361)
T TIGR03297 81 PLLLIVGWRGEPGV-HDEPQHVKQGRITLSLLDALEIPWEVLSTDNDEALAQIERALAHALATSRPYALVVRKGTFASYK 159 (361)
T ss_pred CeeEEEecCCCCCC-CCCchhhHHhHHHHHHHHHcCCCEEECCCChHHHHHHHHHHHHHHHHHCCCEEEEEccccccccc
Confidence 99999976654321 1123332222 2333222 333333556677777888887764321 1
Q ss_pred -------------cc----------------cc----------ccc-CC-----CccccccccccCCCcchhHHHHHHhh
Q psy14416 159 -------------GR----------------SL----------LLN-NL-----PRHRLDAGTFGTMGVGLGFALAAALY 193 (1065)
Q Consensus 159 -------------GP----------------~~----------l~~-~~-----p~~~l~~~~~gsmG~gl~~AlGaala 193 (1065)
.+ ++ +.. +. |++++. +|+|||++|+|+|++++
T Consensus 160 ~~~~~~~~~~~~~~r~~ai~~i~~~l~~~~iVV~~~G~~s~el~~~~~~~~~~~~~~f~~---~GsMG~a~p~AlG~ala 236 (361)
T TIGR03297 160 LKGEPANPLPTLMTREEAIAAILDHLPDNTVIVSTTGKTSRELYELRDRIGQGHARDFLT---VGSMGHASQIALGLALA 236 (361)
T ss_pred cccCCCCCCcCCCCHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHhhcccccCCCCceEe---echhhhHHHHHHHHHHH
Confidence 00 00 100 11 333433 59999999999999998
Q ss_pred hcccCCCCeEEEEeCCCCccccHHHHHHhhhcCC-CEEEEEEcCCee
Q psy14416 194 CNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL-PVILVIVNNNGI 239 (1065)
Q Consensus 194 ~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~l-pivivV~NN~gy 239 (1065)
.|+|+||+++|||+|+|+++||.|++++++ |+++||+||++|
T Consensus 237 ----~p~r~Vv~i~GDGsflm~~~eL~t~~~~~~~nli~VVlNNg~~ 279 (361)
T TIGR03297 237 ----RPDQRVVCLDGDGAALMHMGGLATIGTQGPANLIHVLFNNGAH 279 (361)
T ss_pred ----CCCCCEEEEEChHHHHHHHHHHHHHHHhCCCCeEEEEEcCccc
Confidence 799999999999999999999999999996 899999999987
No 133
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.91 E-value=1.1e-24 Score=220.84 Aligned_cols=153 Identities=22% Similarity=0.287 Sum_probs=145.1
Q ss_pred HHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccccccccc
Q psy14416 271 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMA 349 (1065)
Q Consensus 271 ~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~ 349 (1065)
+++++.|+++||+++||+||+...++.+++.+ .+++++.++||++|++||+||+|.++ +++|++++|||++|+++++.
T Consensus 1 ~~~~~~l~~~gv~~vfg~pg~~~~~l~~~~~~~~~~~~~~~~~E~~a~~~A~G~a~~~~-~~v~~~~~gpg~~~~~~~l~ 79 (154)
T cd06586 1 AAFAEVLTAWGVRHVFGYPGDEISSLLDALREGDKRIIDTVIHELGAAGAAAGYARAGG-PPVVIVTSGTGLLNAINGLA 79 (154)
T ss_pred ChHHHHHHHcCCCEEEEcCCcchHHHHHHHhccCCceEEeeCCHHHHHHHHHHHHHhhC-CEEEEEcCCCcHHHHHHHHH
Confidence 36899999999999999999999999999965 57999999999999999999999999 99999999999999999999
Q ss_pred cccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecCh
Q psy14416 350 NAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPA 425 (1065)
Q Consensus 350 eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~ 425 (1065)
+|+.+++|||+|+++++....+.+.+|+.||..++++++||...++++++..+.+.+|++.+..+ +|||+|++|.
T Consensus 80 ~a~~~~~Pvl~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~-~gPv~l~ip~ 154 (154)
T cd06586 80 DAAAEHLPVVFLIGARGISAQAKQTFQSMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYAS-QGPVVVRLPR 154 (154)
T ss_pred HHHhcCCCEEEEeCCCChhhhccCcccccCHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcC-CCCEEEEccC
Confidence 99999999999999999887778889999999999999999999999999999999999999877 8999999983
No 134
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.90 E-value=2.9e-23 Score=210.56 Aligned_cols=150 Identities=22% Similarity=0.276 Sum_probs=141.8
Q ss_pred HHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhHHHh
Q psy14416 13 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMA 91 (1065)
Q Consensus 13 e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~gla 91 (1065)
+++++.|+++|++++||+||+...++++++.+ .+++++.++||++|++||+||+|.++ +++|++++|||++|+++++.
T Consensus 1 ~~~~~~l~~~gv~~vfg~pg~~~~~l~~~~~~~~~~~~~~~~~E~~a~~~A~G~a~~~~-~~v~~~~~gpg~~~~~~~l~ 79 (154)
T cd06586 1 AAFAEVLTAWGVRHVFGYPGDEISSLLDALREGDKRIIDTVIHELGAAGAAAGYARAGG-PPVVIVTSGTGLLNAINGLA 79 (154)
T ss_pred ChHHHHHHHcCCCEEEEcCCcchHHHHHHHhccCCceEEeeCCHHHHHHHHHHHHHhhC-CEEEEEcCCCcHHHHHHHHH
Confidence 36899999999999999999999999999975 47999999999999999999999999 99999999999999999999
Q ss_pred hcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcccccc
Q psy14416 92 NAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLL 164 (1065)
Q Consensus 92 ~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP~~l~ 164 (1065)
+|+.+++|||+|+++.+....+.+.+|+.||..++++++||..++.+++++++.+.+|++.+..+ +||+++.
T Consensus 80 ~a~~~~~Pvl~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~-~gPv~l~ 151 (154)
T cd06586 80 DAAAEHLPVVFLIGARGISAQAKQTFQSMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYAS-QGPVVVR 151 (154)
T ss_pred HHHhcCCCEEEEeCCCChhhhccCcccccCHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcC-CCCEEEE
Confidence 99999999999999999877777889999999999999999999999999999999999999887 8998874
No 135
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.87 E-value=5.3e-22 Score=201.66 Aligned_cols=140 Identities=18% Similarity=0.168 Sum_probs=120.4
Q ss_pred HHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEE-EecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhHHHh
Q psy14416 13 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYI-GMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMA 91 (1065)
Q Consensus 13 e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v-~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~gla 91 (1065)
|++++.|+++||+++||+||+.+++|++++.. +|++| .+|||+++++||++| |.+|+++||+.++|+| |++++|+
T Consensus 2 ~~~v~~L~~~Gv~~vfGvPg~~~~~l~dal~~-~i~~i~~~~ee~aa~~aAg~~-~~~~~~~v~~~~sG~g--n~~~~l~ 77 (157)
T TIGR03845 2 EAVYNILKDAGIDLVASVPCDNLKNLLPLIEK-DFRHIPLTREEEGVGICAGAY-LAGKKPAILMQSSGLG--NSINALA 77 (157)
T ss_pred hHHHHHHHHCCCeEEEecCcHhHHHHHHHHHh-CCcEEecCChHHHHHHHHHHH-HhcCCcEEEEeCCcHH--HHHHHHH
Confidence 68999999999999999999999999999953 49999 889999999998888 9999999998888876 9999999
Q ss_pred hcc-cCCCcEEEEecCCCC------CcCccCCCccc--chhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcccc
Q psy14416 92 NAQ-INCWPMLVIGGSCAQ------DHEGIGGFQEC--PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSL 162 (1065)
Q Consensus 92 ~A~-~~~~Pll~Isg~~~~------~~~g~~~~Q~~--dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP~~ 162 (1065)
+|+ .+++|||+|+|++.. ...+.+.+++. ++.++ +++++++++++ ..+++|++.|.+++ ||++
T Consensus 78 ~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~~~~~l~~~~i------~~~~i~~~e~~-~~i~~A~~~a~~~~-gPv~ 149 (157)
T TIGR03845 78 SLNKTYGIPLPILASWRGVYKEKIPAQIPMGRATPKLLDTLGI------PYTIPREPEEA-KLIEKAISDAYENS-RPVA 149 (157)
T ss_pred HHHHcCCCCEEEEEeccCCCCCCCccccchhhhhHHHHHHcCC------CeEEeCCHHHH-HHHHHHHHHHHhCC-CCEE
Confidence 999 999999999988887 44444444443 33222 58889999999 99999999999998 9977
Q ss_pred cc
Q psy14416 163 LL 164 (1065)
Q Consensus 163 l~ 164 (1065)
+-
T Consensus 150 il 151 (157)
T TIGR03845 150 AL 151 (157)
T ss_pred EE
Confidence 63
No 136
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.87 E-value=3.2e-22 Score=203.31 Aligned_cols=145 Identities=17% Similarity=0.145 Sum_probs=125.4
Q ss_pred HHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEE-EccCCchHHHHHHHHHHHhCCCeEEEEeccccccccccccc
Q psy14416 271 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYI-GMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMA 349 (1065)
Q Consensus 271 ~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i-~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~ 349 (1065)
+++++.|+++||+++||+||+.+.++++++.. +|++| .++||.+|++||++| +.+|++++|+.++|+| |++++++
T Consensus 2 ~~~v~~L~~~Gv~~vfGvPg~~~~~l~dal~~-~i~~i~~~~ee~aa~~aAg~~-~~~~~~~v~~~~sG~g--n~~~~l~ 77 (157)
T TIGR03845 2 EAVYNILKDAGIDLVASVPCDNLKNLLPLIEK-DFRHIPLTREEEGVGICAGAY-LAGKKPAILMQSSGLG--NSINALA 77 (157)
T ss_pred hHHHHHHHHCCCeEEEecCcHhHHHHHHHHHh-CCcEEecCChHHHHHHHHHHH-HhcCCcEEEEeCCcHH--HHHHHHH
Confidence 57999999999999999999999999999954 49999 889999999888888 9999999998898876 9999999
Q ss_pred ccc-ccCcceEeecCCCcc------CCCCCCCCCcc--ChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEE
Q psy14416 350 NAQ-INCWPMLVIGGSCAQ------DHEGIGGFQEC--PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSY 420 (1065)
Q Consensus 350 eA~-~~~vPLlvItg~~p~------~~~g~ga~Q~i--dQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~ 420 (1065)
+|+ .+++|||+|+|++.. .+.+.+.+++. ++.++ ++..+++++++ +.+++|++.|.+.+ |||+
T Consensus 78 ~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~~~~~l~~~~i------~~~~i~~~e~~-~~i~~A~~~a~~~~-gPv~ 149 (157)
T TIGR03845 78 SLNKTYGIPLPILASWRGVYKEKIPAQIPMGRATPKLLDTLGI------PYTIPREPEEA-KLIEKAISDAYENS-RPVA 149 (157)
T ss_pred HHHHcCCCCEEEEEeccCCCCCCCccccchhhhhHHHHHHcCC------CeEEeCCHHHH-HHHHHHHHHHHhCC-CCEE
Confidence 999 999999999999988 44445544433 33333 57888899999 99999999999888 9999
Q ss_pred EecChhh
Q psy14416 421 LDFPANL 427 (1065)
Q Consensus 421 L~iP~Dv 427 (1065)
|-++.++
T Consensus 150 il~~~~~ 156 (157)
T TIGR03845 150 ALLDPKY 156 (157)
T ss_pred EEEeCCc
Confidence 9998654
No 137
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.87 E-value=4.9e-22 Score=211.27 Aligned_cols=135 Identities=14% Similarity=0.121 Sum_probs=105.2
Q ss_pred ccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhH
Q psy14416 867 NGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTY 946 (1065)
Q Consensus 867 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~ 946 (1065)
||+++|+++ ||+++. |+++|+ +++|||+| +|+.+||
T Consensus 59 mG~~lpaai--Ga~la~--------p~~~vv---------------------------------~i~GDG~f-~m~~~eL 94 (202)
T cd02006 59 LGWTVPAAL--GVAAAD--------PDRQVV---------------------------------ALSGDYDF-QFMIEEL 94 (202)
T ss_pred hhhhhHHHH--hHHhhC--------CCCeEE---------------------------------EEEeChHh-hccHHHH
Confidence 399999998 999998 999999 99999999 9999999
Q ss_pred HHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCC----cccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHH
Q psy14416 947 ASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGE----VTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVP 1022 (1065)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 1022 (1065)
+|+ +|+++|+++||+||+| |+..... ......... ...........+++||.++|++||+++++|++.+
T Consensus 95 ~Ta-----~~~~lpviivV~NN~~-yg~~~~~-q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~ 167 (202)
T cd02006 95 AVG-----AQHRIPYIHVLVNNAY-LGLIRQA-QRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVTKPE 167 (202)
T ss_pred HHH-----HHhCCCeEEEEEeCch-HHHHHHH-HHHhcCccccccccccccccccCCCCCCHHHHHHHCCCEEEEECCHH
Confidence 999 9999999999999987 4432221 111100000 0000111123456999999999999999999999
Q ss_pred HHHHHHHHHHh---cCCCCEEEEEEeCCCCCCC
Q psy14416 1023 QIKQAMKKCLQ---TTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 1023 ~l~~~~~~~~~---~~~~~~li~~~~~~~~~~~ 1052 (1065)
||+++|+++++ ..++|+||||.+++++..+
T Consensus 168 el~~al~~a~~~~~~~~~p~liev~i~~~~~~~ 200 (202)
T cd02006 168 ELAAAFEQAKKLMAEHRVPVVVEAILERVTNIS 200 (202)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEEEecccccCC
Confidence 99999999985 2389999999999887643
No 138
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.86 E-value=8.8e-21 Score=216.81 Aligned_cols=88 Identities=19% Similarity=0.221 Sum_probs=78.8
Q ss_pred CceEEEeecCCchhhhHHHhh-c-CCceEEEccCCchHHHHHHHHHHHhCCCeEEE-Eecccc-ccccccccccccccCc
Q psy14416 281 GIEYVFGIVGIPVIELAMACQ-Q-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCL-VVSGPG-LLHTFGGMANAQINCW 356 (1065)
Q Consensus 281 GV~~vfg~pG~~~~~l~~al~-~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~-~tsGpG-~~N~~~av~eA~~~~v 356 (1065)
||++++|+|.+...+++..+. + +.+++|.+.+|..|..+|.|+..+|||..+++ -.||.| ..|.+..+++...-++
T Consensus 1 gi~~~~gvP~s~l~~~~~~~~~~~~~~~~i~~~~E~~av~iaaG~~latG~~~~v~mQnSGlGn~vN~l~SL~~~~~y~i 80 (361)
T TIGR03297 1 GFDFFSGVPDSLLKPFCNYITDNNRDLRHVIAANEGAAVGLAAGAYLATGKRAAVYMQNSGLGNAVNPLTSLADTEVYDI 80 (361)
T ss_pred CceEEEeCcHHHHHHHHHHHHhcCCCceEEecCCchHHHHHHHHHHHhcCCccEEEEecCchhhhhhHHHhhccccccCc
Confidence 799999999999999999987 3 37999999999999999999999988755555 589999 9999999999999999
Q ss_pred ceEeecCCCccC
Q psy14416 357 PMLVIGGSCAQD 368 (1065)
Q Consensus 357 PLlvItg~~p~~ 368 (1065)
|+++|.+.|...
T Consensus 81 P~l~~i~~RG~~ 92 (361)
T TIGR03297 81 PLLLIVGWRGEP 92 (361)
T ss_pred CeeEEEecCCCC
Confidence 999999998654
No 139
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.86 E-value=1.2e-21 Score=207.34 Aligned_cols=132 Identities=17% Similarity=0.213 Sum_probs=106.7
Q ss_pred cccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhh
Q psy14416 866 NNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETT 945 (1065)
Q Consensus 866 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~ 945 (1065)
+||+++++++ ||+++. |+++|+ +++|||+| +|+.++
T Consensus 54 ~mG~~lpaai--Ga~la~--------p~r~vv---------------------------------~i~GDG~f-~m~~~e 89 (196)
T cd02013 54 NCGYALPAII--GAKAAA--------PDRPVV---------------------------------AIAGDGAW-GMSMME 89 (196)
T ss_pred ccccHHHHHH--HHHHhC--------CCCcEE---------------------------------EEEcchHH-hccHHH
Confidence 3399999998 999998 999999 99999999 999999
Q ss_pred HHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHH
Q psy14416 946 YASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIK 1025 (1065)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~ 1025 (1065)
|+|+ +++++|+++||+||+| |+..... .... ..+.. .....+++||.++|++||+++++|++.+||+
T Consensus 90 L~Ta-----~~~~lpvi~vV~NN~~-yg~~~~~-q~~~-~~~~~-----~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~ 156 (196)
T cd02013 90 IMTA-----VRHKLPVTAVVFRNRQ-WGAEKKN-QVDF-YNNRF-----VGTELESESFAKIAEACGAKGITVDKPEDVG 156 (196)
T ss_pred HHHH-----HHhCCCeEEEEEECch-hHHHHHH-HHHH-cCCCc-----ccccCCCCCHHHHHHHCCCEEEEECCHHHHH
Confidence 9999 9999999999999988 4432221 1111 11111 1122346999999999999999999999999
Q ss_pred HHHHHHHh---cCCCCEEEEEEeCCCCCCCcch
Q psy14416 1026 QAMKKCLQ---TTTRPSLINILINPSADRKPQN 1055 (1065)
Q Consensus 1026 ~~~~~~~~---~~~~~~li~~~~~~~~~~~~~~ 1055 (1065)
++|+++++ . ++|+||||.+++++..+.++
T Consensus 157 ~al~~a~~~~~~-~~p~liev~v~~~~~~~~~~ 188 (196)
T cd02013 157 PALQKAIAMMAE-GKTTVIEIVCDQELGDPFRR 188 (196)
T ss_pred HHHHHHHhcCCC-CCeEEEEEEeCcccCCchHH
Confidence 99999997 6 89999999999998765533
No 140
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.85 E-value=2e-21 Score=207.02 Aligned_cols=144 Identities=17% Similarity=0.216 Sum_probs=114.4
Q ss_pred cccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhh
Q psy14416 866 NNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETT 945 (1065)
Q Consensus 866 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~ 945 (1065)
+||+++|+++ ||+++. |+++|+ +++|||+| +|+.++
T Consensus 49 smG~~lpaAi--Ga~la~--------p~~~vv---------------------------------~i~GDGsf-~m~~~e 84 (205)
T cd02003 49 CMGYEIAAGL--GAKLAK--------PDREVY---------------------------------VLVGDGSY-LMLHSE 84 (205)
T ss_pred hhhhHHHHHH--HHHHhC--------CCCeEE---------------------------------EEEccchh-hccHHH
Confidence 3499999988 999998 999999 99999999 999999
Q ss_pred HHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcc-cCCC-------CCCCCCCccHHHHHHHcCCCeEe
Q psy14416 946 YASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVT-TVSP-------PTSLGPSLRYEKMMAVFGHDGYL 1017 (1065)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~g~~~~~ 1017 (1065)
|+|+ +++++|+++||+||+| |+.+... .+........ .+.. .....+++||.++|++||+++++
T Consensus 85 L~Ta-----~~~~lpv~ivV~NN~~-~g~~~~~--q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~ 156 (205)
T cd02003 85 IVTA-----VQEGLKIIIVLFDNHG-FGCINNL--QESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEK 156 (205)
T ss_pred HHHH-----HHcCCCCEEEEEECCc-cHHHHHH--HHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEE
Confidence 9999 9999999999999988 3322211 1110000000 0000 12235679999999999999999
Q ss_pred eCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCcchhhhhHhh
Q psy14416 1018 CTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKPQNFSWLTNL 1062 (1065)
Q Consensus 1018 ~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~ 1062 (1065)
|++.+||+++|+++++. ++|+||||.++++...+.++.+|..+.
T Consensus 157 v~~~~el~~al~~a~~~-~gp~lIeV~v~~~~~~~~~~~~~~~~~ 200 (205)
T cd02003 157 VKTIEELKAALAKAKAS-DRTTVIVIKTDPKSMTPGYGSWWDVGV 200 (205)
T ss_pred ECCHHHHHHHHHHHHhC-CCCEEEEEEeeccccCCCCCCeEeCcc
Confidence 99999999999999976 899999999999999998888887543
No 141
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=99.84 E-value=2.4e-20 Score=214.43 Aligned_cols=152 Identities=19% Similarity=0.193 Sum_probs=139.1
Q ss_pred ccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhh
Q psy14416 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 87 (1065)
Q Consensus 9 ~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l 87 (1065)
..-+..+++.|.++||+++.-.||+.+.||--++.+. +|+++.-.+|++|+|+|.|.++.++||.+++||||..++|+.
T Consensus 8 t~~a~v~~eeL~r~GV~~vvicPGSRSTPLala~~~~~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA~ANl~ 87 (566)
T COG1165 8 TLWARVFLEELARLGVRDVVICPGSRSTPLALAAAAHDAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTAVANLY 87 (566)
T ss_pred HHHHHHHHHHHHHcCCcEEEECCCCCCcHHHHHHHhcCCeEEEEecccchHHHHHHhhhhhcCCCEEEEEcCcchhhhcc
Confidence 4557889999999999999999999999999888765 799999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHH-------HHHHHHHHHhhcCCCcc
Q psy14416 88 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIG-------QHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 88 ~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~-------~~l~~A~~~A~~~rpGP 160 (1065)
+++.||...++|+|++|+++|...++.++.|.+||..||....+|+..+..|+.-+ ....++++.|.+..+||
T Consensus 88 PAViEA~~srvpLIVLTADRP~EL~~~GAnQaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~~~~~~~~~a~~~~~Gp 167 (566)
T COG1165 88 PAVIEANLSRVPLIVLTADRPPELRGCGANQAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTIASAAAQQARTPHAGP 167 (566)
T ss_pred HHHHhhhhcCCceEEEeCCCCHHHhcCCCchhhhhhhhhcccchhhccCCCCCCCHHHHHHHHHHHHHHHHhccCCCCCc
Confidence 99999999999999999999999999999999999999999999999998887633 33466777776677777
No 142
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.84 E-value=6e-21 Score=198.64 Aligned_cols=125 Identities=19% Similarity=0.253 Sum_probs=103.5
Q ss_pred cccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHH
Q psy14416 868 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYA 947 (1065)
Q Consensus 868 g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~ 947 (1065)
|+++++++ ||+++. |+++|+ +++|||+| +|+.++++
T Consensus 51 G~~lp~ai--Ga~la~--------~~~~vv---------------------------------~i~GDG~f-~m~~~eL~ 86 (177)
T cd02010 51 GVALPGAI--GAKLVY--------PDRKVV---------------------------------AVSGDGGF-MMNSQELE 86 (177)
T ss_pred hhHHHHHH--HHHHhC--------CCCcEE---------------------------------EEEcchHH-HhHHHHHH
Confidence 99999888 999998 999999 99999999 99999999
Q ss_pred HhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHH
Q psy14416 948 SIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQA 1027 (1065)
Q Consensus 948 ~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~ 1027 (1065)
|+ +|+++|+++||+||+| |+.+... ..... +. ......+++||.++|++||++++++++.+||+++
T Consensus 87 ta-----~~~~l~vi~vV~NN~~-~g~~~~~--~~~~~-~~-----~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~a 152 (177)
T cd02010 87 TA-----VRLKIPLVVLIWNDNG-YGLIKWK--QEKEY-GR-----DSGVDFGNPDFVKYAESFGAKGYRIESADDLLPV 152 (177)
T ss_pred HH-----HHHCCCeEEEEEECCc-chHHHHH--HHHhc-CC-----cccCcCCCCCHHHHHHHCCCEEEEECCHHHHHHH
Confidence 99 9999999999999988 5543211 11111 11 1122235689999999999999999999999999
Q ss_pred HHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 1028 MKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 1028 ~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
++++++. ++|+||||.+++++..
T Consensus 153 l~~a~~~-~~p~liev~~~~~~~~ 175 (177)
T cd02010 153 LERALAA-DGVHVIDCPVDYSENI 175 (177)
T ss_pred HHHHHhC-CCCEEEEEEecccccC
Confidence 9999986 8999999999986653
No 143
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.83 E-value=1.9e-20 Score=196.63 Aligned_cols=130 Identities=22% Similarity=0.374 Sum_probs=104.9
Q ss_pred ccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhH
Q psy14416 867 NGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTY 946 (1065)
Q Consensus 867 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~ 946 (1065)
+|+++++++ ||+++. |+++|+ +++|||+| +|+.++|
T Consensus 52 mG~~lp~ai--Ga~la~--------~~~~vv---------------------------------~i~GDG~f-~~~~~eL 87 (186)
T cd02015 52 MGFGLPAAI--GAKVAR--------PDKTVI---------------------------------CIDGDGSF-QMNIQEL 87 (186)
T ss_pred hhchHHHHH--HHHHhC--------CCCeEE---------------------------------EEEcccHH-hccHHHH
Confidence 399998888 999998 899999 99999999 9999999
Q ss_pred HHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHH
Q psy14416 947 ASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQ 1026 (1065)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~ 1026 (1065)
+|+ +++++|+++||+||++ |+.+... ......+.. ......+++||.++|++||+++++|++.+||++
T Consensus 88 ~ta-----~~~~lpi~ivV~nN~~-~~~~~~~--~~~~~~~~~----~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~ 155 (186)
T cd02015 88 ATA-----AQYNLPVKIVILNNGS-LGMVRQW--QELFYEGRY----SHTTLDSNPDFVKLAEAYGIKGLRVEKPEELEA 155 (186)
T ss_pred HHH-----HHhCCCeEEEEEECCc-cHHHHHH--HHHHcCCce----eeccCCCCCCHHHHHHHCCCceEEeCCHHHHHH
Confidence 999 9999999999999987 3432221 111111111 112334679999999999999999999999999
Q ss_pred HHHHHHhcCCCCEEEEEEeCCCCCCCc
Q psy14416 1027 AMKKCLQTTTRPSLINILINPSADRKP 1053 (1065)
Q Consensus 1027 ~~~~~~~~~~~~~li~~~~~~~~~~~~ 1053 (1065)
+++++++. ++|+||||.++++++..+
T Consensus 156 al~~a~~~-~~p~liev~~~~~~~~~~ 181 (186)
T cd02015 156 ALKEALAS-DGPVLLDVLVDPEENVLP 181 (186)
T ss_pred HHHHHHhC-CCCEEEEEEeCCCcccCC
Confidence 99999976 899999999998776543
No 144
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.83 E-value=1.6e-18 Score=212.39 Aligned_cols=151 Identities=17% Similarity=0.065 Sum_probs=111.7
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc----CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGL 341 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~----~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~ 341 (1065)
-+++.++++..+.+.|++.+.+.|+++.+++.+.+.+ .++.+....||.+|..||.|-+.+-. .++..|||||+
T Consensus 4 ~~~GneA~A~g~~~ag~~~~~~YPiTP~t~i~e~l~~~~~~~~~~~~~~~~E~~a~~~~~GAs~aG~--ra~t~ts~~Gl 81 (595)
T TIGR03336 4 LLLGNEAIARGALEAGVGVAAAYPGTPSSEITDTLAKVAKRAGVYFEWSVNEKVAVEVAAGAAWSGL--RAFCTMKHVGL 81 (595)
T ss_pred eecHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHhhhhccEEEEECcCHHHHHHHHHHHHhcCc--ceEEEccCCch
Confidence 4689999999999999999999999999999988744 35888888999999999988776433 45568999998
Q ss_pred ccccccccccc--ccCcceEeecCCCccCCCCCCCCCccChhh-hhcccccE-EeeCCChhhHHHHHHHHHHHhhcCCCC
Q psy14416 342 LHTFGGMANAQ--INCWPMLVIGGSCAQDHEGIGGFQECPQVE-LARPYCKY-SARPPNIHLIGQHVEKAVRLSTFGKPG 417 (1065)
Q Consensus 342 ~N~~~av~eA~--~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~-l~~~~~k~-s~~l~~~~~i~~~i~~A~~~A~~~~~G 417 (1065)
.=+.-.+..+. --+.|+|++.+++|...- .|. +|.+ ++.-++.| .....+++++-+...+|++.|..- .-
T Consensus 82 ~~~~e~l~~~~~~g~~~~iV~~~~~~~gp~~----~~~-~q~d~~~~~~~~~~vl~p~~~qE~~d~~~~Af~lae~~-~~ 155 (595)
T TIGR03336 82 NVAADPLMTLAYTGVKGGLVVVVADDPSMHS----SQN-EQDTRHYAKFAKIPCLEPSTPQEAKDMVKYAFELSEKF-GL 155 (595)
T ss_pred hhhHHHhhhhhhhcCcCceEEEEccCCCCcc----chh-hHhHHHHHHhcCCeEECCCCHHHHHHHHHHHHHHHHHH-CC
Confidence 54444443333 337889999999876652 221 2322 33334454 445678888999999999999753 35
Q ss_pred EEEEecC
Q psy14416 418 VSYLDFP 424 (1065)
Q Consensus 418 PV~L~iP 424 (1065)
||.+..=
T Consensus 156 PV~v~~d 162 (595)
T TIGR03336 156 PVILRPT 162 (595)
T ss_pred CEEEEEe
Confidence 7877764
No 145
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=99.82 E-value=2.7e-20 Score=185.69 Aligned_cols=130 Identities=37% Similarity=0.642 Sum_probs=116.9
Q ss_pred HHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCccccc-------HHHHhhhcCCCE
Q psy14416 489 LKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVS-------AARTHALQNADL 561 (1065)
Q Consensus 489 v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg-------~~~~~al~~aDl 561 (1065)
+++++++|++||||+|++|.++.++++.+++++|+|++|+||++++++||.++++||+|+| ....+++++||+
T Consensus 1 i~~~~~~L~~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDl 80 (137)
T PF00205_consen 1 IDEAADLLSSAKRPVILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADL 80 (137)
T ss_dssp HHHHHHHHHH-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSE
T ss_pred CHHHHHHHHhCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCE
Confidence 5789999999999999999999888899999999999999999999999999999999987 356678899999
Q ss_pred EEEeCCccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHH
Q psy14416 562 VLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQL 618 (1065)
Q Consensus 562 VI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L 618 (1065)
||.+|+++++..+.++...+.++.++||||.|+..+++.+.+++.+++|++.+|++|
T Consensus 81 vl~iG~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~~~~~~~~~i~~d~~~~l~~L 137 (137)
T PF00205_consen 81 VLAIGTRLSDFNTYGFSPAFNPDAKIIQIDPDPAEIGKNYPPDVAIVGDIKAFLRAL 137 (137)
T ss_dssp EEEESSSSSTTTTTTTTGCSTTTSEEEEEESSGGGTTSSSEESEEEESHHHHHHHHH
T ss_pred EEEECCCCccccccccccccCCCCEEEEEECCHHHhCCCCCCCEEEEECHHHHhhCC
Confidence 999999999987777655566666999999999999999999999999999999986
No 146
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.82 E-value=6.5e-20 Score=190.08 Aligned_cols=122 Identities=31% Similarity=0.518 Sum_probs=100.4
Q ss_pred cccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHH
Q psy14416 868 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYA 947 (1065)
Q Consensus 868 g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~ 947 (1065)
|+++|+++ |++++. |+++|+ +++|||+| +|+.++++
T Consensus 51 G~~lp~Ai--Ga~la~--------~~~~vv---------------------------------~i~GDG~f-~~~~~el~ 86 (172)
T cd02004 51 GVGLGYAI--AAALAR--------PDKRVV---------------------------------LVEGDGAF-GFSGMELE 86 (172)
T ss_pred cchHHHHH--HHHHhC--------CCCeEE---------------------------------EEEcchhh-cCCHHHHH
Confidence 99999988 999998 899999 99999999 99999999
Q ss_pred HhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHH
Q psy14416 948 SIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQA 1027 (1065)
Q Consensus 948 ~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~ 1027 (1065)
++ +++++|+++||+||+| |+..... ... .. + .........+.+||.++|++||+++.+|++.+||+++
T Consensus 87 ta-----~~~~lpv~ivv~NN~~-~~~~~~~-~~~-~~-~---~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~a 154 (172)
T cd02004 87 TA-----VRYNLPIVVVVGNNGG-WYQGLDG-QQL-SY-G---LGLPVTTLLPDTRYDLVAEAFGGKGELVTTPEELKPA 154 (172)
T ss_pred HH-----HHcCCCEEEEEEECcc-cccchhh-hhh-hc-c---CCCceeccCCCCCHHHHHHHCCCeEEEECCHHHHHHH
Confidence 99 9999999999999988 3332221 111 00 0 1122233446799999999999999999999999999
Q ss_pred HHHHHhcCCCCEEEEEEeC
Q psy14416 1028 MKKCLQTTTRPSLINILIN 1046 (1065)
Q Consensus 1028 ~~~~~~~~~~~~li~~~~~ 1046 (1065)
|+++++. ++|+||||.+|
T Consensus 155 l~~a~~~-~~p~liev~i~ 172 (172)
T cd02004 155 LKRALAS-GKPALINVIID 172 (172)
T ss_pred HHHHHHc-CCCEEEEEEcC
Confidence 9999986 89999999985
No 147
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.80 E-value=1e-19 Score=189.17 Aligned_cols=122 Identities=14% Similarity=0.153 Sum_probs=94.4
Q ss_pred cccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHH
Q psy14416 868 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYA 947 (1065)
Q Consensus 868 g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~ 947 (1065)
|+++|+++ +|+++. +++|+ +++|||+| +|+.++|+
T Consensus 54 G~~l~~ai--Ga~la~---------~~~Vv---------------------------------~i~GDGsf-~m~~~eL~ 88 (175)
T cd02009 54 DGTLSTAL--GIALAT---------DKPTV---------------------------------LLTGDLSF-LHDLNGLL 88 (175)
T ss_pred hhHHHHHH--HHHhcC---------CCCEE---------------------------------EEEehHHH-HHhHHHHH
Confidence 78888777 888874 36788 99999999 99999999
Q ss_pred HhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHH
Q psy14416 948 SIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQA 1027 (1065)
Q Consensus 948 ~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~ 1027 (1065)
|+ +|+++|+++||+||++ |+.+... ..... +. .+...+...+++||+++|++||+++++|++.+||+++
T Consensus 89 ta-----~~~~l~v~ivVlNN~~-~g~~~~~--~~~~~-~~--~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~a 157 (175)
T cd02009 89 LG-----KQEPLNLTIVVINNNG-GGIFSLL--PQASF-ED--EFERLFGTPQGLDFEHLAKAYGLEYRRVSSLDELEQA 157 (175)
T ss_pred hc-----cccCCCeEEEEEECCC-Cchheec--cCCcc-cc--hhhhhhcCCCCCCHHHHHHHcCCCeeeCCCHHHHHHH
Confidence 99 9999999999999987 3321110 00000 00 0011111224799999999999999999999999999
Q ss_pred HHHHHhcCCCCEEEEEEeC
Q psy14416 1028 MKKCLQTTTRPSLINILIN 1046 (1065)
Q Consensus 1028 ~~~~~~~~~~~~li~~~~~ 1046 (1065)
|+++++. ++|+||||.+|
T Consensus 158 l~~a~~~-~~p~lIev~v~ 175 (175)
T cd02009 158 LESALAQ-DGPHVIEVKTD 175 (175)
T ss_pred HHHHHhC-CCCEEEEEeCC
Confidence 9999986 99999999985
No 148
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.80 E-value=1.5e-19 Score=188.48 Aligned_cols=123 Identities=20% Similarity=0.265 Sum_probs=100.9
Q ss_pred cccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHH
Q psy14416 868 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYA 947 (1065)
Q Consensus 868 g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~ 947 (1065)
|+++|+++ +++++. |+++|+ +++|||+| +|+.++++
T Consensus 54 G~~~~~ai--Ga~~a~--------~~~~vv---------------------------------~i~GDG~f-~~~~~el~ 89 (178)
T cd02014 54 GNGLPGAI--AAKLAY--------PDRQVI---------------------------------ALSGDGGF-AMLMGDLI 89 (178)
T ss_pred hhHHHHHH--HHHHhC--------CCCcEE---------------------------------EEEcchHH-HhhHHHHH
Confidence 99889888 899988 889999 99999999 99999999
Q ss_pred HhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHH
Q psy14416 948 SIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQA 1027 (1065)
Q Consensus 948 ~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~ 1027 (1065)
++ +++++|+++||+||+| |+.+... ... . +. .......+.+||.++|++||++++++++.+||+++
T Consensus 90 t~-----~~~~lp~~~iv~NN~~-~~~~~~~-~~~-~--~~----~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~~ 155 (178)
T cd02014 90 TA-----VKYNLPVIVVVFNNSD-LGFIKWE-QEV-M--GQ----PEFGVDLPNPDFAKIAEAMGIKGIRVEDPDELEAA 155 (178)
T ss_pred HH-----HHhCCCcEEEEEECCc-hhHHHHH-HHH-h--cC----CceeccCCCCCHHHHHHHCCCeEEEeCCHHHHHHH
Confidence 99 9999999999999987 4432211 111 0 10 11122235689999999999999999999999999
Q ss_pred HHHHHhcCCCCEEEEEEeCCCC
Q psy14416 1028 MKKCLQTTTRPSLINILINPSA 1049 (1065)
Q Consensus 1028 ~~~~~~~~~~~~li~~~~~~~~ 1049 (1065)
++++++. ++|+||||.+++++
T Consensus 156 l~~a~~~-~~p~liev~~~~~~ 176 (178)
T cd02014 156 LDEALAA-DGPVVIDVVTDPNE 176 (178)
T ss_pred HHHHHhC-CCCEEEEEEeCCCC
Confidence 9999986 89999999998764
No 149
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.79 E-value=2.4e-19 Score=187.61 Aligned_cols=125 Identities=20% Similarity=0.262 Sum_probs=102.5
Q ss_pred cccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhh
Q psy14416 866 NNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETT 945 (1065)
Q Consensus 866 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~ 945 (1065)
+||+++++++ ||+++. |+++|+ +++|||+| +|+.++
T Consensus 51 ~mG~~l~~ai--Gaala~--------~~~~vv---------------------------------~i~GDG~f-~~~~~e 86 (183)
T cd02005 51 SIGYSVPAAL--GAALAA--------PDRRVI---------------------------------LLVGDGSF-QMTVQE 86 (183)
T ss_pred hHhhhHHHHH--HHHHhC--------CCCeEE---------------------------------EEECCchh-hccHHH
Confidence 3499999888 999998 889999 99999999 999999
Q ss_pred HHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcC----CCeEeeCCH
Q psy14416 946 YASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFG----HDGYLCTTV 1021 (1065)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~ 1021 (1065)
++|+ +++++|+++||+||+| |+.+... + . .. ..+...+++||.++|++|| +++.+|++.
T Consensus 87 l~ta-----~~~~~p~~ivV~nN~~-~~~~~~~-~----~-~~-----~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~~~ 149 (183)
T cd02005 87 LSTM-----IRYGLNPIIFLINNDG-YTIERAI-H----G-PE-----ASYNDIANWNYTKLPEVFGGGGGGLSFRVKTE 149 (183)
T ss_pred HHHH-----HHhCCCCEEEEEECCC-cEEEEEe-c----c-CC-----cCcccCCCCCHHHHHHHhCCCccccEEEecCH
Confidence 9999 9999999999999988 3322211 0 0 00 0112224589999999999 899999999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 1022 PQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 1022 ~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
+||+++|+++++..++|+||||.+++++..
T Consensus 150 ~el~~al~~a~~~~~~p~liev~~~~~~~~ 179 (183)
T cd02005 150 GELDEALKDALFNRDKLSLIEVILPKDDAP 179 (183)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCcccCC
Confidence 999999999998238999999999987765
No 150
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.76 E-value=3.4e-18 Score=178.19 Aligned_cols=126 Identities=21% Similarity=0.343 Sum_probs=97.7
Q ss_pred cccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHH
Q psy14416 868 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYA 947 (1065)
Q Consensus 868 g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~ 947 (1065)
|+++++++ |++++. |+++|+ +++|||+| +|+.++++
T Consensus 52 G~~lp~ai--Gaala~--------~~~~vv---------------------------------~i~GDG~f-~~~~~el~ 87 (178)
T cd02002 52 GWGLPAAV--GAALAN--------PDRKVV---------------------------------AIIGDGSF-MYTIQALW 87 (178)
T ss_pred cchHHHHH--HHHhcC--------CCCeEE---------------------------------EEEcCchh-hccHHHHH
Confidence 88888888 999988 889999 99999999 99999999
Q ss_pred HhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCC-cccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHH
Q psy14416 948 SIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGE-VTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQ 1026 (1065)
Q Consensus 948 ~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~ 1026 (1065)
++ +++++|+++||+||+| |+..... .......+. ...........+.+||.++|++||+++++|++.+||++
T Consensus 88 ta-----~~~~~p~~~iV~nN~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~ 160 (178)
T cd02002 88 TA-----ARYGLPVTVVILNNRG-YGALRSF-LKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERVETPEELDE 160 (178)
T ss_pred HH-----HHhCCCeEEEEEcCcc-HHHHHHH-HHHHcCCCcccccccccccCCCCCCHHHHHHHcCCceEEeCCHHHHHH
Confidence 99 9999999999999987 3322111 111000000 00111122224569999999999999999999999999
Q ss_pred HHHHHHhcCCCCEEEEEEe
Q psy14416 1027 AMKKCLQTTTRPSLINILI 1045 (1065)
Q Consensus 1027 ~~~~~~~~~~~~~li~~~~ 1045 (1065)
+++++++. ++|+||||.+
T Consensus 161 al~~a~~~-~~p~vi~v~v 178 (178)
T cd02002 161 ALREALAE-GGPALIEVVV 178 (178)
T ss_pred HHHHHHhC-CCCEEEEEEC
Confidence 99999986 8999999975
No 151
>PRK06163 hypothetical protein; Provisional
Probab=99.75 E-value=2.8e-18 Score=181.45 Aligned_cols=120 Identities=14% Similarity=0.210 Sum_probs=101.6
Q ss_pred eccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcch
Q psy14416 864 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 943 (1065)
Q Consensus 864 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~ 943 (1065)
+++||+++++++ ||+++. |+++|| +++|||+| +|+.
T Consensus 56 ~GsMG~glpaAi--GaalA~--------p~r~Vv---------------------------------~i~GDG~f-~m~~ 91 (202)
T PRK06163 56 LGSMGLAFPIAL--GVALAQ--------PKRRVI---------------------------------ALEGDGSL-LMQL 91 (202)
T ss_pred ecccccHHHHHH--HHHHhC--------CCCeEE---------------------------------EEEcchHH-HHHH
Confidence 455699999998 999998 999999 99999999 9999
Q ss_pred hhHHHhhccCcccc-CCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCC-eEeeCCH
Q psy14416 944 TTYASIVESGEVTT-VLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHD-GYLCTTV 1021 (1065)
Q Consensus 944 ~~~~~~~~~~~~~~-~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~ 1021 (1065)
++++|+ +++ ++|+++||+||+| |+... +. .....+++||.++|++||++ +++|++.
T Consensus 92 ~eL~Ta-----~~~~~lpi~ivV~NN~~-yg~~~----------~~------~~~~~~~~Df~~lA~a~G~~~~~~v~~~ 149 (202)
T PRK06163 92 GALGTI-----AALAPKNLTIIVMDNGV-YQITG----------GQ------PTLTSQTVDVVAIARGAGLENSHWAADE 149 (202)
T ss_pred HHHHHH-----HHhcCCCeEEEEEcCCc-hhhcC----------Cc------cCCCCCCCCHHHHHHHCCCceEEEeCCH
Confidence 999999 876 6899999999987 33110 10 11223569999999999998 7899999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q psy14416 1022 PQIKQAMKKCLQTTTRPSLINILINPSAD 1050 (1065)
Q Consensus 1022 ~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 1050 (1065)
+||+++|+++++. ++|+||||.+++...
T Consensus 150 ~el~~al~~a~~~-~~p~lIeV~i~~~~~ 177 (202)
T PRK06163 150 AHFEALVDQALSG-PGPSFIAVRIDDKPG 177 (202)
T ss_pred HHHHHHHHHHHhC-CCCEEEEEEecCCCC
Confidence 9999999999986 999999999998765
No 152
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.73 E-value=1.2e-17 Score=176.89 Aligned_cols=112 Identities=32% Similarity=0.399 Sum_probs=86.2
Q ss_pred cccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeec
Q psy14416 163 LLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGG 242 (1065)
Q Consensus 163 l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g 242 (1065)
+....|.+++.++.+|+|||++|+|+|++++ +|+|+|||++|||+|+|+.+||+|++||++|+++||+||++| |
T Consensus 38 ~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la----~p~r~vv~i~GDG~f~m~~~eL~Ta~~~~lpvi~vV~NN~~y--g 111 (196)
T cd02013 38 LRFEKPRSFIAPLSFGNCGYALPAIIGAKAA----APDRPVVAIAGDGAWGMSMMEIMTAVRHKLPVTAVVFRNRQW--G 111 (196)
T ss_pred cCcCCCCeEEcCCCCcccccHHHHHHHHHHh----CCCCcEEEEEcchHHhccHHHHHHHHHhCCCeEEEEEECchh--H
Confidence 4456788889888899999999999999998 799999999999999999999999999999999999999988 7
Q ss_pred cccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCch
Q psy14416 243 FDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPV 293 (1065)
Q Consensus 243 ~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~ 293 (1065)
+.+ +.|+..+...... ..........++++ ||+++.++
T Consensus 112 ~~~---~~q~~~~~~~~~~-~~~~~~d~~~lA~a---------~G~~~~~v 149 (196)
T cd02013 112 AEK---KNQVDFYNNRFVG-TELESESFAKIAEA---------CGAKGITV 149 (196)
T ss_pred HHH---HHHHHHcCCCccc-ccCCCCCHHHHHHH---------CCCEEEEE
Confidence 654 4444333221111 11112455667776 66666444
No 153
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.72 E-value=9.6e-18 Score=178.42 Aligned_cols=82 Identities=33% Similarity=0.438 Sum_probs=73.3
Q ss_pred cccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeec
Q psy14416 163 LLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGG 242 (1065)
Q Consensus 163 l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g 242 (1065)
++...|++++.++.+|+|||++|+|+||+++ .|+|+|||++|||||+|+.|||+|++||++|+++||+||++| |
T Consensus 42 ~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la----~p~~~vv~i~GDG~f~m~~~eL~Ta~~~~lpviivV~NN~~y--g 115 (202)
T cd02006 42 LHVYKPRHWINCGQAGPLGWTVPAALGVAAA----DPDRQVVALSGDYDFQFMIEELAVGAQHRIPYIHVLVNNAYL--G 115 (202)
T ss_pred cCcCCCCeEEccCCccchhhhhHHHHhHHhh----CCCCeEEEEEeChHhhccHHHHHHHHHhCCCeEEEEEeCchH--H
Confidence 4456788888888899999999999999999 799999999999999999999999999999999999999988 6
Q ss_pred cccchhhhhhh
Q psy14416 243 FDEATYAWLDI 253 (1065)
Q Consensus 243 ~~~~~~~~~~l 253 (1065)
+.+ ++|+.
T Consensus 116 ~~~---~~q~~ 123 (202)
T cd02006 116 LIR---QAQRA 123 (202)
T ss_pred HHH---HHHHH
Confidence 654 45543
No 154
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.71 E-value=4.3e-17 Score=172.01 Aligned_cols=129 Identities=16% Similarity=0.216 Sum_probs=99.4
Q ss_pred cccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEecccc-ccCcchh
Q psy14416 866 NNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGI-YGGFDET 944 (1065)
Q Consensus 866 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~-~~~~~~~ 944 (1065)
+||+++++++ ||+++. |+++|| +++|||+ | +|..+
T Consensus 52 ~mG~glpaAi--Ga~la~--------p~r~Vv---------------------------------~i~GDGs~f-~m~~~ 87 (193)
T cd03375 52 LHGRALAVAT--GVKLAN--------PDLTVI---------------------------------VVSGDGDLA-AIGGN 87 (193)
T ss_pred hhccHHHHHH--HHHHhC--------CCCeEE---------------------------------EEeccchHh-hccHH
Confidence 3499888888 999998 999999 9999999 6 89999
Q ss_pred hHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeE---eeCCH
Q psy14416 945 TYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGY---LCTTV 1021 (1065)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~ 1021 (1065)
+++|+ +++++|+++||+||++ |+....... .....+......+.....+.+||.++|++||+++. ++++.
T Consensus 88 eL~ta-----~~~~lpv~iiVlnN~~-yg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~ 160 (193)
T cd03375 88 HFIHA-----ARRNIDITVIVHNNQI-YGLTKGQAS-PTTPEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDI 160 (193)
T ss_pred HHHHH-----HHhCCCeEEEEEcCcc-cccCCCccC-CCCCCCCcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCH
Confidence 99999 9999999999999987 554332110 00001111111111112246899999999999994 79999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEEEeC
Q psy14416 1022 PQIKQAMKKCLQTTTRPSLINILIN 1046 (1065)
Q Consensus 1022 ~~l~~~~~~~~~~~~~~~li~~~~~ 1046 (1065)
+||+++|+++++. ++|+||||.++
T Consensus 161 ~el~~al~~al~~-~gp~vIev~~~ 184 (193)
T cd03375 161 KQLKEIIKKAIQH-KGFSFVEVLSP 184 (193)
T ss_pred HHHHHHHHHHHhc-CCCEEEEEECC
Confidence 9999999999986 99999999985
No 155
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.69 E-value=6.5e-17 Score=169.82 Aligned_cols=77 Identities=40% Similarity=0.688 Sum_probs=70.2
Q ss_pred cccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeec
Q psy14416 163 LLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGG 242 (1065)
Q Consensus 163 l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g 242 (1065)
++...|.+++.++.+|+|||++|+|+|++++ .|+|+||+++|||+|+|+.+||+|++|+++|+++||+||++| +
T Consensus 35 ~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la----~~~~~vv~i~GDG~f~~~~~eL~ta~~~~lpi~ivV~nN~~~--~ 108 (186)
T cd02015 35 YRFKKPRSWLTSGGLGTMGFGLPAAIGAKVA----RPDKTVICIDGDGSFQMNIQELATAAQYNLPVKIVILNNGSL--G 108 (186)
T ss_pred cccCCCCeEEeCCCccchhchHHHHHHHHHh----CCCCeEEEEEcccHHhccHHHHHHHHHhCCCeEEEEEECCcc--H
Confidence 4446788888888899999999999999998 699999999999999999999999999999999999999977 5
Q ss_pred ccc
Q psy14416 243 FDE 245 (1065)
Q Consensus 243 ~~~ 245 (1065)
+.+
T Consensus 109 ~~~ 111 (186)
T cd02015 109 MVR 111 (186)
T ss_pred HHH
Confidence 544
No 156
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.69 E-value=6.9e-17 Score=168.43 Aligned_cols=122 Identities=14% Similarity=0.053 Sum_probs=96.9
Q ss_pred ccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcc-h
Q psy14416 865 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD-E 943 (1065)
Q Consensus 865 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~-~ 943 (1065)
+++|+++++++ +++++. |+++|+ +++|||+| +|+ .
T Consensus 51 g~mG~gl~~Ai--Ga~la~--------p~~~Vv---------------------------------~i~GDG~f-~~~g~ 86 (178)
T cd02008 51 TCMGASIGVAI--GMAKAS--------EDKKVV---------------------------------AVIGDSTF-FHSGI 86 (178)
T ss_pred ccCccHHHHHh--hHHhhC--------CCCCEE---------------------------------EEecChHH-hhccH
Confidence 34499998888 999998 899999 99999999 888 5
Q ss_pred hhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHH
Q psy14416 944 TTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQ 1023 (1065)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 1023 (1065)
++++++ +++++|+++||+||++ |+...... . . ..........+.+||.++|++||++++++++.+|
T Consensus 87 ~eL~ta-----~~~~l~i~vvV~nN~~-~g~~~~~~--~----~--~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~ 152 (178)
T cd02008 87 LGLINA-----VYNKANITVVILDNRT-TAMTGGQP--H----P--GTGKTLTEPTTVIDIEALVRAIGVKRVVVVDPYD 152 (178)
T ss_pred HHHHHH-----HHcCCCEEEEEECCcc-eeccCCCC--C----C--CCcccccCCCCccCHHHHHHHCCCCEEEecCccC
Confidence 999999 9999999999999998 33222110 0 0 0001112334569999999999999999999998
Q ss_pred HH---HHHHHHHhcCCCCEEEEEEe
Q psy14416 1024 IK---QAMKKCLQTTTRPSLINILI 1045 (1065)
Q Consensus 1024 l~---~~~~~~~~~~~~~~li~~~~ 1045 (1065)
|+ ++|+++++. ++|+||+|..
T Consensus 153 l~~~~~al~~a~~~-~gp~lI~v~~ 176 (178)
T cd02008 153 LKAIREELKEALAV-PGVSVIIAKR 176 (178)
T ss_pred HHHHHHHHHHHHhC-CCCEEEEEeC
Confidence 88 888999876 8999999964
No 157
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.69 E-value=4.6e-17 Score=165.51 Aligned_cols=123 Identities=22% Similarity=0.329 Sum_probs=98.5
Q ss_pred cccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhh
Q psy14416 866 NNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETT 945 (1065)
Q Consensus 866 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~ 945 (1065)
+||+++++++ +++++. |+++|+ +++|||+| +|+.++
T Consensus 29 ~mG~~~~~ai--Ga~~a~--------p~~~vv---------------------------------~i~GDG~f-~~~~~e 64 (153)
T PF02775_consen 29 SMGYALPAAI--GAALAR--------PDRPVV---------------------------------AITGDGSF-LMSLQE 64 (153)
T ss_dssp -TTTHHHHHH--HHHHHS--------TTSEEE---------------------------------EEEEHHHH-HHHGGG
T ss_pred ccCCHHHhhh--HHHhhc--------CcceeE---------------------------------EecCCcce-eeccch
Confidence 3399888888 999987 999999 99999999 999999
Q ss_pred HHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCH--HH
Q psy14416 946 YASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTV--PQ 1023 (1065)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~ 1023 (1065)
|+|+ +++++|+++||+||++ |+..... .. ..+............+++||+++|++||+++++|++. +|
T Consensus 65 l~ta-----~~~~~~v~~vv~nN~~-~~~~~~~--~~--~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~e 134 (153)
T PF02775_consen 65 LATA-----VRYGLPVVIVVLNNGG-YGMTGGQ--QT--PFGGGRFSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEE 134 (153)
T ss_dssp HHHH-----HHTTSSEEEEEEESSB-SHHHHHH--HH--HTTSTCHHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHH
T ss_pred hHHH-----hhccceEEEEEEeCCc-ceEeccc--cc--cCcCcccccccccccccCCHHHHHHHcCCcEEEEccCCHHH
Confidence 9999 9999999999999988 3322221 11 1111111111112578999999999999999999999 99
Q ss_pred HHHHHHHHHhcCCCCEEEEE
Q psy14416 1024 IKQAMKKCLQTTTRPSLINI 1043 (1065)
Q Consensus 1024 l~~~~~~~~~~~~~~~li~~ 1043 (1065)
|+++|+++++. ++|+||||
T Consensus 135 l~~al~~a~~~-~gp~vIeV 153 (153)
T PF02775_consen 135 LEEALREALES-GGPAVIEV 153 (153)
T ss_dssp HHHHHHHHHHS-SSEEEEEE
T ss_pred HHHHHHHHHhC-CCcEEEEc
Confidence 99999999976 99999997
No 158
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.68 E-value=5e-17 Score=169.24 Aligned_cols=77 Identities=38% Similarity=0.581 Sum_probs=70.5
Q ss_pred cccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeec
Q psy14416 163 LLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGG 242 (1065)
Q Consensus 163 l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g 242 (1065)
++...|++++.++.+|+|||++|+|+|++++ +|+++||+++|||+|+|+.+||+|++||++|+++||+||++| |
T Consensus 33 ~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la----~~~~~vv~i~GDG~f~m~~~eL~ta~~~~l~vi~vV~NN~~~--g 106 (177)
T cd02010 33 YRTYAPNTCLISNGLATMGVALPGAIGAKLV----YPDRKVVAVSGDGGFMMNSQELETAVRLKIPLVVLIWNDNGY--G 106 (177)
T ss_pred CCcCCCCCEEeCCCChhhhhHHHHHHHHHHh----CCCCcEEEEEcchHHHhHHHHHHHHHHHCCCeEEEEEECCcc--h
Confidence 4446678888899999999999999999998 799999999999999999999999999999999999999988 6
Q ss_pred ccc
Q psy14416 243 FDE 245 (1065)
Q Consensus 243 ~~~ 245 (1065)
+.+
T Consensus 107 ~~~ 109 (177)
T cd02010 107 LIK 109 (177)
T ss_pred HHH
Confidence 643
No 159
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.68 E-value=1.2e-16 Score=163.09 Aligned_cols=116 Identities=21% Similarity=0.272 Sum_probs=98.2
Q ss_pred eccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcch
Q psy14416 864 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 943 (1065)
Q Consensus 864 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~ 943 (1065)
++++|+++++++ |++++. | ++|+ +++|||+| +|+.
T Consensus 41 ~gsmG~~lp~Ai--Ga~~a~--------~-~~Vv---------------------------------~i~GDG~f-~m~~ 75 (157)
T cd02001 41 LGSMGLAGSIGL--GLALGL--------S-RKVI---------------------------------VVDGDGSL-LMNP 75 (157)
T ss_pred ecchhhHHHHHH--HHHhcC--------C-CcEE---------------------------------EEECchHH-Hhcc
Confidence 566699999888 999987 6 7899 99999999 9999
Q ss_pred hhHHHhhccCcccc-CCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHH
Q psy14416 944 TTYASIVESGEVTT-VLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVP 1022 (1065)
Q Consensus 944 ~~~~~~~~~~~~~~-~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 1022 (1065)
++++|+ .++ ++|+++||+||++ |+.... . .. . ...+||.++|++||++++++++.+
T Consensus 76 ~el~t~-----~~~~~~~i~~vV~nN~~-~g~~~~----------~-~~----~--~~~~d~~~lA~a~G~~~~~v~~~~ 132 (157)
T cd02001 76 GVLLTA-----GEFTPLNLILVVLDNRA-YGSTGG----------Q-PT----P--SSNVNLEAWAAACGYLVLSAPLLG 132 (157)
T ss_pred cHHHHH-----HHhcCCCEEEEEEeCcc-ccccCC----------c-CC----C--CCCCCHHHHHHHCCCceEEcCCHH
Confidence 999999 888 5999999999988 332210 0 00 1 126899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCEEEEEEeCCC
Q psy14416 1023 QIKQAMKKCLQTTTRPSLINILINPS 1048 (1065)
Q Consensus 1023 ~l~~~~~~~~~~~~~~~li~~~~~~~ 1048 (1065)
||+++++++++. ++|+||||.++++
T Consensus 133 el~~al~~a~~~-~gp~vi~v~i~~~ 157 (157)
T cd02001 133 GLGSEFAGLLAT-TGPTLLHAPIAPG 157 (157)
T ss_pred HHHHHHHHHHhC-CCCEEEEEEecCC
Confidence 999999999986 8999999999863
No 160
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.68 E-value=2.1e-16 Score=163.93 Aligned_cols=77 Identities=66% Similarity=1.020 Sum_probs=70.7
Q ss_pred cccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeec
Q psy14416 163 LLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGG 242 (1065)
Q Consensus 163 l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g 242 (1065)
+....|.+++.++.+|+||+++|+|+|++++ .|+|+||+++|||+|+|+.+||+|++++++|+++||+||++| +
T Consensus 33 ~~~~~p~~~~~~~~~g~mG~~lp~AiGa~la----~~~~~vv~i~GDG~f~~~~~el~ta~~~~lpv~ivv~NN~~~--~ 106 (172)
T cd02004 33 LRPRKPRHRLDAGTFGTLGVGLGYAIAAALA----RPDKRVVLVEGDGAFGFSGMELETAVRYNLPIVVVVGNNGGW--Y 106 (172)
T ss_pred ccccCCCcEecCCCCCcccchHHHHHHHHHh----CCCCeEEEEEcchhhcCCHHHHHHHHHcCCCEEEEEEECccc--c
Confidence 4456788888888899999999999999999 799999999999999999999999999999999999999988 6
Q ss_pred ccc
Q psy14416 243 FDE 245 (1065)
Q Consensus 243 ~~~ 245 (1065)
+.+
T Consensus 107 ~~~ 109 (172)
T cd02004 107 QGL 109 (172)
T ss_pred cch
Confidence 554
No 161
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.67 E-value=1.6e-16 Score=166.84 Aligned_cols=119 Identities=15% Similarity=0.261 Sum_probs=102.0
Q ss_pred ccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchh
Q psy14416 865 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDET 944 (1065)
Q Consensus 865 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~ 944 (1065)
+++|+++++++ |++++. |+++|+ +++|||+| +|+.+
T Consensus 48 g~mG~~lpaAi--Gaala~--------p~~~Vv---------------------------------~i~GDG~f-~m~~~ 83 (188)
T cd03371 48 GSMGHASQIAL--GIALAR--------PDRKVV---------------------------------CIDGDGAA-LMHMG 83 (188)
T ss_pred CccccHHHHHH--HHHHhC--------CCCcEE---------------------------------EEeCCcHH-Hhhcc
Confidence 77899999998 999998 899999 99999999 99999
Q ss_pred hHHHhhccCccccCC-CEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCe-EeeCCHH
Q psy14416 945 TYASIVESGEVTTVL-PVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDG-YLCTTVP 1022 (1065)
Q Consensus 945 ~~~~~~~~~~~~~~~-~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~ 1022 (1065)
+++|+ .++++ |+++||+||+| |+.+. +. ....+.+||.++|++||+++ ++|++.+
T Consensus 84 eL~ta-----~~~~l~~i~ivV~NN~~-yg~~~----------~~-------~~~~~~~d~~~~A~a~G~~~~~~v~~~~ 140 (188)
T cd03371 84 GLATI-----GGLAPANLIHIVLNNGA-HDSVG----------GQ-------PTVSFDVSLPAIAKACGYRAVYEVPSLE 140 (188)
T ss_pred HHHHH-----HHcCCCCcEEEEEeCch-hhccC----------Cc-------CCCCCCCCHHHHHHHcCCceEEecCCHH
Confidence 99999 99986 79999999987 43221 00 11234689999999999998 5899999
Q ss_pred HHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 1023 QIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 1023 ~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
||+++++++++. ++|+||||.+++....
T Consensus 141 el~~al~~a~~~-~~p~lIev~~~~~~~~ 168 (188)
T cd03371 141 ELVAALAKALAA-DGPAFIEVKVRPGSRS 168 (188)
T ss_pred HHHHHHHHHHhC-CCCEEEEEEecCCCCC
Confidence 999999999986 8999999999988764
No 162
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.67 E-value=1.9e-16 Score=168.84 Aligned_cols=77 Identities=25% Similarity=0.346 Sum_probs=71.0
Q ss_pred cccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeec
Q psy14416 163 LLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGG 242 (1065)
Q Consensus 163 l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g 242 (1065)
++...|.+++.++.+|+|||++|+|+|++++ +|+|+||+++|||+|+|+.+||+|++||++|+++||+||++| |
T Consensus 33 ~~~~~~~~~~~~~~~gsmG~~lpaAiGa~la----~p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~--g 106 (205)
T cd02003 33 WRARTPGGYHLEYGYSCMGYEIAAGLGAKLA----KPDREVYVLVGDGSYLMLHSEIVTAVQEGLKIIIVLFDNHGF--G 106 (205)
T ss_pred CCcCCCCcEEcCCCcchhhhHHHHHHHHHHh----CCCCeEEEEEccchhhccHHHHHHHHHcCCCCEEEEEECCcc--H
Confidence 4446788888888899999999999999998 799999999999999999999999999999999999999988 7
Q ss_pred ccc
Q psy14416 243 FDE 245 (1065)
Q Consensus 243 ~~~ 245 (1065)
+.+
T Consensus 107 ~~~ 109 (205)
T cd02003 107 CIN 109 (205)
T ss_pred HHH
Confidence 655
No 163
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.65 E-value=9.9e-15 Score=179.06 Aligned_cols=102 Identities=17% Similarity=0.115 Sum_probs=82.0
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh----CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcch
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGL 83 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~----~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~ 83 (1065)
-|+|.|+++..+.+.|++.+.|.|+++..++.+.|.+ .++.+....+|.+|..||.|-+. +|.-+ +..|+|||+
T Consensus 4 ~~~GneA~A~g~~~ag~~~~~~YPiTP~t~i~e~l~~~~~~~~~~~~~~~~E~~a~~~~~GAs~-aG~ra-~t~ts~~Gl 81 (595)
T TIGR03336 4 LLLGNEAIARGALEAGVGVAAAYPGTPSSEITDTLAKVAKRAGVYFEWSVNEKVAVEVAAGAAW-SGLRA-FCTMKHVGL 81 (595)
T ss_pred eecHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHhhhhccEEEEECcCHHHHHHHHHHHHh-cCcce-EEEccCCch
Confidence 5799999999999999999999999999999999864 25889999999999999999554 56444 456899998
Q ss_pred hhhhHHHhhcc--cCCCcEEEEecCCCCCc
Q psy14416 84 LHTFGGMANAQ--INCWPMLVIGGSCAQDH 111 (1065)
Q Consensus 84 ~N~l~gla~A~--~~~~Pll~Isg~~~~~~ 111 (1065)
.=+.-.|..+. --+.|++++.++.+...
T Consensus 82 ~~~~e~l~~~~~~g~~~~iV~~~~~~~gp~ 111 (595)
T TIGR03336 82 NVAADPLMTLAYTGVKGGLVVVVADDPSMH 111 (595)
T ss_pred hhhHHHhhhhhhhcCcCceEEEEccCCCCc
Confidence 55555554433 33788999998876543
No 164
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.65 E-value=3.3e-16 Score=169.95 Aligned_cols=128 Identities=16% Similarity=0.066 Sum_probs=96.3
Q ss_pred ccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhH
Q psy14416 867 NGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTY 946 (1065)
Q Consensus 867 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~ 946 (1065)
+|++++.++ +|+++. |+++|| +++|||+|.+|..++|
T Consensus 64 mG~GlpaAi--Ga~~a~--------p~r~VV---------------------------------~i~GDG~~~~m~~~eL 100 (235)
T cd03376 64 VASGIEAAL--KALGRG--------KDITVV---------------------------------AFAGDGGTADIGFQAL 100 (235)
T ss_pred HHHHHHHHH--HHhccC--------CCCeEE---------------------------------EEEcCchHHhhHHHHH
Confidence 488888877 888887 999999 9999999328999999
Q ss_pred HHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhh-cCCcccCCCCC-----CCCCCccHHHHHHHcCCCeE---e
Q psy14416 947 ASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVE-SGEVTTVSPPT-----SLGPSLRYEKMMAVFGHDGY---L 1017 (1065)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~---~ 1017 (1065)
+++ +++++|+++||+||++ |+.. .. ...... .+......... ...+.+||.++|++||++++ +
T Consensus 101 ~ta-----~~~~~pv~~vVlNN~~-yg~t-g~-q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~ 172 (235)
T cd03376 101 SGA-----AERGHDILYICYDNEA-YMNT-GI-QRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATAS 172 (235)
T ss_pred HHH-----HHcCCCeEEEEECCcc-cccC-CC-CCCCCCCCCCEeecCCCCccccccccccCCHHHHHHHcCCcEEEEEc
Confidence 999 9999999999999976 5521 10 000000 01100000111 13355999999999999986 5
Q ss_pred eCCHHHHHHHHHHHHhcCCCCEEEEEEeC
Q psy14416 1018 CTTVPQIKQAMKKCLQTTTRPSLINILIN 1046 (1065)
Q Consensus 1018 ~~~~~~l~~~~~~~~~~~~~~~li~~~~~ 1046 (1065)
+++.+||+++|+++++. ++|+||||.++
T Consensus 173 v~~~~el~~al~~a~~~-~gP~lIev~~~ 200 (235)
T cd03376 173 VAYPEDLYKKVKKALSI-EGPAYIHILSP 200 (235)
T ss_pred CCCHHHHHHHHHHHHhC-CCCEEEEEECC
Confidence 99999999999999987 89999999985
No 165
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.64 E-value=6.3e-16 Score=168.05 Aligned_cols=136 Identities=11% Similarity=0.041 Sum_probs=100.3
Q ss_pred ccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhH
Q psy14416 867 NGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTY 946 (1065)
Q Consensus 867 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~ 946 (1065)
+|+++++++ +|+++...+. .|+++|+ +++|||+|.+|..+++
T Consensus 66 mG~GlpaAi--GA~~a~~~~~---~p~~~Vv---------------------------------~i~GDG~~~~~g~~~l 107 (237)
T cd02018 66 VASGLKRGL--KARFPKDREL---DKKKDVV---------------------------------VIGGDGATYDIGFGAL 107 (237)
T ss_pred HHHHHHHHH--Hhhccccccc---CCCCcEE---------------------------------EEeCchHHHhccHHHH
Confidence 488888888 8988811000 1889999 9999999933789999
Q ss_pred HHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHH-hhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEe---eCCHH
Q psy14416 947 ASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASI-VESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYL---CTTVP 1022 (1065)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~ 1022 (1065)
++. +++++|+++||+||++ |+..... ... ...+..+...+.....+..||.++|++||+.+++ +++.+
T Consensus 108 ~ta-----~~~~l~i~ivVlNN~~-yg~~~~q--~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~ 179 (237)
T cd02018 108 SHS-----LFRGEDITVIVLDNEV-YSNTGGQ--RSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKK 179 (237)
T ss_pred HHH-----HHcCCCeEEEEECCcc-ccCCCCC--CCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHH
Confidence 999 8899999999999976 4422111 000 0011111112223345679999999999999996 99999
Q ss_pred HHHHHHHHHHh-cCCCCEEEEEEeCCCC
Q psy14416 1023 QIKQAMKKCLQ-TTTRPSLINILINPSA 1049 (1065)
Q Consensus 1023 ~l~~~~~~~~~-~~~~~~li~~~~~~~~ 1049 (1065)
||+++|+++++ . ++|+||||.++-..
T Consensus 180 ~l~~al~~al~~~-~GP~lI~v~i~c~~ 206 (237)
T cd02018 180 HFLKVVKEAISRT-DGPTFIHAYTPCIT 206 (237)
T ss_pred HHHHHHHHHHhcC-CCCEEEEEeCCCCC
Confidence 99999999997 6 89999999987543
No 166
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.63 E-value=9e-16 Score=160.06 Aligned_cols=119 Identities=22% Similarity=0.402 Sum_probs=98.7
Q ss_pred ccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchh
Q psy14416 865 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDET 944 (1065)
Q Consensus 865 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~ 944 (1065)
+++|+++++++ |++++. | ++|+ +++|||+| +|+.+
T Consensus 42 g~mG~~lp~Ai--Gaala~--------~-~~vv---------------------------------~i~GDG~f-~m~~~ 76 (179)
T cd03372 42 GSMGLASSIGL--GLALAQ--------P-RKVI---------------------------------VIDGDGSL-LMNLG 76 (179)
T ss_pred cchhhHHHHHH--HHHhcC--------C-CcEE---------------------------------EEECCcHH-HhCHH
Confidence 44588888888 999987 7 8899 99999999 99999
Q ss_pred hHHHhhccCccccCC-CEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeC-CHH
Q psy14416 945 TYASIVESGEVTTVL-PVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCT-TVP 1022 (1065)
Q Consensus 945 ~~~~~~~~~~~~~~~-~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~ 1022 (1065)
+++++ +++++ |+++||+||+| |+.... . .....+.+||.++|++||+++++++ +.+
T Consensus 77 el~ta-----~~~~~~~l~vvV~NN~~-~~~~~~----------~------~~~~~~~~d~~~lA~a~G~~~~~v~~~~~ 134 (179)
T cd03372 77 ALATI-----AAEKPKNLIIVVLDNGA-YGSTGN----------Q------PTHAGKKTDLEAVAKACGLDNVATVASEE 134 (179)
T ss_pred HHHHH-----HHcCCCCEEEEEEcCcc-ccccCC----------C------CCCCCCCCCHHHHHHHcCCCeEEecCCHH
Confidence 99999 89984 79999999988 332210 0 0112247999999999999999999 999
Q ss_pred HHHHHHHHHHhcCCCCEEEEEEeCCCCCCCc
Q psy14416 1023 QIKQAMKKCLQTTTRPSLINILINPSADRKP 1053 (1065)
Q Consensus 1023 ~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~ 1053 (1065)
||+++|++++ ++|+||||.+++++...|
T Consensus 135 el~~al~~a~---~gp~lIev~~~~~~~~~~ 162 (179)
T cd03372 135 AFEKAVEQAL---DGPSFIHVKIKPGNTDVP 162 (179)
T ss_pred HHHHHHHHhc---CCCEEEEEEEcCCCCCCC
Confidence 9999999997 689999999998887544
No 167
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.63 E-value=8.5e-16 Score=158.14 Aligned_cols=122 Identities=20% Similarity=0.249 Sum_probs=98.0
Q ss_pred cccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhh
Q psy14416 866 NNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETT 945 (1065)
Q Consensus 866 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~ 945 (1065)
++|++++.++ |++++. |+++|+ +++|||+| +++.++
T Consensus 47 ~~G~~~~~a~--Gaa~a~--------~~~~vv---------------------------------~~~GDG~~-~~~~~~ 82 (168)
T cd00568 47 AMGYGLPAAI--GAALAA--------PDRPVV---------------------------------CIAGDGGF-MMTGQE 82 (168)
T ss_pred hhhhhHHHHH--HHHHhC--------CCCcEE---------------------------------EEEcCcHH-hccHHH
Confidence 3388888777 888888 889999 99999999 889999
Q ss_pred HHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHH
Q psy14416 946 YASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIK 1025 (1065)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~ 1025 (1065)
++++ .++++|+++||+||++ |...... . .... .........+.+||.+++++||+++.++++.+||+
T Consensus 83 l~ta-----~~~~~~~~~iv~nN~~-~~~~~~~-~-~~~~-----~~~~~~~~~~~~d~~~~a~~~G~~~~~v~~~~~l~ 149 (168)
T cd00568 83 LATA-----VRYGLPVIVVVFNNGG-YGTIRMH-Q-EAFY-----GGRVSGTDLSNPDFAALAEAYGAKGVRVEDPEDLE 149 (168)
T ss_pred HHHH-----HHcCCCcEEEEEECCc-cHHHHHH-H-HHHc-----CCCcccccCCCCCHHHHHHHCCCeEEEECCHHHHH
Confidence 9999 9999999999999987 3322221 1 1100 11122344577999999999999999999999999
Q ss_pred HHHHHHHhcCCCCEEEEEEe
Q psy14416 1026 QAMKKCLQTTTRPSLINILI 1045 (1065)
Q Consensus 1026 ~~~~~~~~~~~~~~li~~~~ 1045 (1065)
++++++++. ++|+||||.+
T Consensus 150 ~a~~~a~~~-~~p~~i~v~~ 168 (168)
T cd00568 150 AALAEALAA-GGPALIEVKT 168 (168)
T ss_pred HHHHHHHhC-CCCEEEEEEC
Confidence 999999976 8999999975
No 168
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.62 E-value=1.3e-15 Score=159.04 Aligned_cols=121 Identities=18% Similarity=0.315 Sum_probs=99.0
Q ss_pred eccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcch
Q psy14416 864 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 943 (1065)
Q Consensus 864 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~ 943 (1065)
++++|+++++++ |++++. +++|+ +++|||+| +|+.
T Consensus 41 ~gsmG~~lpaAi--Ga~la~---------~~~Vv---------------------------------~i~GDG~f-~m~~ 75 (181)
T TIGR03846 41 LGSMGLASSIGL--GLALAT---------DRTVI---------------------------------VIDGDGSL-LMNL 75 (181)
T ss_pred ccccccHHHHHH--HHHHcC---------CCcEE---------------------------------EEEcchHH-Hhhh
Confidence 456699988888 999885 35688 99999999 9999
Q ss_pred hhHHHhhccCccccC-CCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEe-eCCH
Q psy14416 944 TTYASIVESGEVTTV-LPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYL-CTTV 1021 (1065)
Q Consensus 944 ~~~~~~~~~~~~~~~-~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~ 1021 (1065)
++++|+ ++++ +|+++||+||+| |+..... . ....+++||.++|++||+++.+ +++.
T Consensus 76 ~el~ta-----~~~~~~pv~~vV~NN~~-yg~~~~q---------~-------~~~~~~~d~~~lA~a~G~~~~~~v~~~ 133 (181)
T TIGR03846 76 GVLPTI-----AAESPKNLILVILDNGA-YGSTGNQ---------P-------TPASRRTDLELVAKAAGIRNVEKVADE 133 (181)
T ss_pred hHHHHH-----HHhCCCCeEEEEEeCCc-cccccCc---------C-------CCCCCCCCHHHHHHHCCCCeEEEeCCH
Confidence 999999 9999 599999999987 4432200 0 0111478999999999999999 9999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCc
Q psy14416 1022 PQIKQAMKKCLQTTTRPSLINILINPSADRKP 1053 (1065)
Q Consensus 1022 ~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~ 1053 (1065)
+||+++|+ +++. ++|+||||.+++++...|
T Consensus 134 ~~l~~al~-a~~~-~~p~li~v~~~~~~~~~p 163 (181)
T TIGR03846 134 EELRDALK-ALAM-KGPTFIHVKVKPGNAKVP 163 (181)
T ss_pred HHHHHHHH-HHcC-CCCEEEEEEeCCCCCCCC
Confidence 99999997 8765 899999999998876433
No 169
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.61 E-value=5.4e-16 Score=161.26 Aligned_cols=76 Identities=25% Similarity=0.201 Sum_probs=68.4
Q ss_pred cccc-CCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeee
Q psy14416 162 LLLN-NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIY 240 (1065)
Q Consensus 162 ~l~~-~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~ 240 (1065)
+++. ..|++++.+.++++||+++|+|+|++++ . +|+||+++|||||+|++|||+|++|+++|+++||+||++|
T Consensus 34 ~~~~~~~~~~~~~~~g~g~mG~~l~~aiGa~la----~-~~~Vv~i~GDGsf~m~~~eL~ta~~~~l~v~ivVlNN~~~- 107 (175)
T cd02009 34 FALPSDKTVRVFANRGASGIDGTLSTALGIALA----T-DKPTVLLTGDLSFLHDLNGLLLGKQEPLNLTIVVINNNGG- 107 (175)
T ss_pred ccCccCCCceEEecCCccchhhHHHHHHHHHhc----C-CCCEEEEEehHHHHHhHHHHHhccccCCCeEEEEEECCCC-
Confidence 3444 5678888888899999999999999998 4 8999999999999999999999999999999999999987
Q ss_pred eccc
Q psy14416 241 GGFD 244 (1065)
Q Consensus 241 ~g~~ 244 (1065)
|+.
T Consensus 108 -g~~ 110 (175)
T cd02009 108 -GIF 110 (175)
T ss_pred -chh
Confidence 653
No 170
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.61 E-value=2.1e-15 Score=167.50 Aligned_cols=141 Identities=18% Similarity=0.274 Sum_probs=105.7
Q ss_pred cccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEecccc-ccCcchhhH
Q psy14416 868 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGI-YGGFDETTY 946 (1065)
Q Consensus 868 g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~-~~~~~~~~~ 946 (1065)
|.++++|+ |++++. |+++|| +++|||+ | ++..+++
T Consensus 72 G~alpaAi--GaklA~--------Pd~~VV---------------------------------~i~GDG~~f-~mg~~eL 107 (286)
T PRK11867 72 GRALAIAT--GLKLAN--------PDLTVI---------------------------------VVTGDGDAL-AIGGNHF 107 (286)
T ss_pred hcHHHHHH--HHHHhC--------CCCcEE---------------------------------EEeCccHHH-hCCHHHH
Confidence 88888888 999998 999999 9999995 8 9999999
Q ss_pred HHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEe---eCCHHH
Q psy14416 947 ASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYL---CTTVPQ 1023 (1065)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~ 1023 (1065)
+++ +|+++|+++||+||++ |+..... +......+..+...+.....+.+||.++|+++|+.++. +.+.+|
T Consensus 108 ~tA-----~r~nl~i~vIV~NN~~-yGmt~~q-~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~e 180 (286)
T PRK11867 108 IHA-----LRRNIDITYILFNNQI-YGLTKGQ-YSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQ 180 (286)
T ss_pred HHH-----HHhCCCcEEEEEeCHH-HhhhcCc-cCCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHH
Confidence 999 9999999999999966 5533321 10000111111112222233569999999999999874 788999
Q ss_pred HHHHHHHHHhcCCCCEEEEEEeCCCCCCCcchhhhhH
Q psy14416 1024 IKQAMKKCLQTTTRPSLINILINPSADRKPQNFSWLT 1060 (1065)
Q Consensus 1024 l~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~ 1060 (1065)
|+++|+++++. ++|+||||.++=-..-+...+.|.+
T Consensus 181 l~~al~~Al~~-~Gp~lIev~~~C~~~~~~~~~~~~~ 216 (286)
T PRK11867 181 LTELIKAAINH-KGFSFVEILQPCPTFNNVNTFDWFK 216 (286)
T ss_pred HHHHHHHHHhC-CCCEEEEEeCCCCCCCchHHHHHHH
Confidence 99999999987 8999999998644443444466664
No 171
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.61 E-value=1.3e-15 Score=154.83 Aligned_cols=77 Identities=45% Similarity=0.707 Sum_probs=70.1
Q ss_pred cccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeec
Q psy14416 163 LLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGG 242 (1065)
Q Consensus 163 l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g 242 (1065)
++...|.+++.+..+++||+++|+|+|++++ .|+|+||+++|||+|+|+.+||+|++|+++|+++||+||++| +
T Consensus 13 ~~~~~p~~~~~~~~~g~mG~~~~~aiGa~~a----~p~~~vv~i~GDG~f~~~~~el~ta~~~~~~v~~vv~nN~~~--~ 86 (153)
T PF02775_consen 13 LRVRRPRRFLTSGGFGSMGYALPAAIGAALA----RPDRPVVAITGDGSFLMSLQELATAVRYGLPVVIVVLNNGGY--G 86 (153)
T ss_dssp SCCSSTTEEEESTTTT-TTTHHHHHHHHHHH----STTSEEEEEEEHHHHHHHGGGHHHHHHTTSSEEEEEEESSBS--H
T ss_pred cCcCCCCeEEcCCCccccCCHHHhhhHHHhh----cCcceeEEecCCcceeeccchhHHHhhccceEEEEEEeCCcc--e
Confidence 4556788999999999999999999999998 799999999999999999999999999999999999999987 5
Q ss_pred ccc
Q psy14416 243 FDE 245 (1065)
Q Consensus 243 ~~~ 245 (1065)
+.+
T Consensus 87 ~~~ 89 (153)
T PF02775_consen 87 MTG 89 (153)
T ss_dssp HHH
T ss_pred Eec
Confidence 543
No 172
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.60 E-value=2.1e-15 Score=166.41 Aligned_cols=134 Identities=13% Similarity=0.142 Sum_probs=101.9
Q ss_pred cccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhh
Q psy14416 866 NNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETT 945 (1065)
Q Consensus 866 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~ 945 (1065)
++|+++++|+ ||++|. |+++|| +++|||+|.++..++
T Consensus 69 ~~G~alPaAi--GaklA~--------Pdr~VV---------------------------------~i~GDG~f~~~g~~e 105 (277)
T PRK09628 69 THGRAVAYAT--GIKLAN--------PDKHVI---------------------------------VVSGDGDGLAIGGNH 105 (277)
T ss_pred ccccHHHHHH--HHHHHC--------CCCeEE---------------------------------EEECchHHHHhhHHH
Confidence 3488888887 999998 999999 999999993357789
Q ss_pred HHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeE---eeCCHH
Q psy14416 946 YASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGY---LCTTVP 1022 (1065)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~ 1022 (1065)
+.++ +|+++|+++||+||++ |+..... .......+..+...+.....+++||.++|++||+.++ ++++.+
T Consensus 106 l~ta-----~r~nlpi~iIV~NN~~-yGmt~~Q-~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~~~~ 178 (277)
T PRK09628 106 TIHG-----CRRNIDLNFILINNFI-YGLTNSQ-TSPTTPKGMWTVTAQYGNIDPTFDACKLATAAGASFVARESVIDPQ 178 (277)
T ss_pred HHHH-----HHhCcCeEEEEEEChH-Hhcceec-ccCCCCCCceeeeccCCCcCCCCCHHHHHHHCCCceEEEEccCCHH
Confidence 9999 9999999999999965 5533211 1100011111111122223467899999999999984 999999
Q ss_pred HHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q psy14416 1023 QIKQAMKKCLQTTTRPSLINILINPSAD 1050 (1065)
Q Consensus 1023 ~l~~~~~~~~~~~~~~~li~~~~~~~~~ 1050 (1065)
||+++++++++. ++|+||||.++...+
T Consensus 179 el~~al~~Al~~-~Gp~lIeV~~~c~~~ 205 (277)
T PRK09628 179 KLEKLLVKGFSH-KGFSFFDVFSNCHIN 205 (277)
T ss_pred HHHHHHHHHHhC-CCCEEEEEcCCCCCC
Confidence 999999999987 999999999987653
No 173
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.58 E-value=2.1e-15 Score=157.93 Aligned_cols=77 Identities=32% Similarity=0.538 Sum_probs=69.9
Q ss_pred cccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeec
Q psy14416 163 LLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGG 242 (1065)
Q Consensus 163 l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g 242 (1065)
+....|++++.++.+|+||+++|+|+|++++ .|+|+||+++|||+|+|+.+||+|++||++|+++||+||++| +
T Consensus 35 ~~~~~~~~~~~~~~~g~mG~~l~~aiGaala----~~~~~vv~i~GDG~f~~~~~el~ta~~~~~p~~ivV~nN~~~--~ 108 (183)
T cd02005 35 LKLPKGTRFISQPLWGSIGYSVPAALGAALA----APDRRVILLVGDGSFQMTVQELSTMIRYGLNPIIFLINNDGY--T 108 (183)
T ss_pred ccCCCCCEEEeccchhhHhhhHHHHHHHHHh----CCCCeEEEEECCchhhccHHHHHHHHHhCCCCEEEEEECCCc--E
Confidence 3345678888888999999999999999999 699999999999999999999999999999999999999987 5
Q ss_pred ccc
Q psy14416 243 FDE 245 (1065)
Q Consensus 243 ~~~ 245 (1065)
+.+
T Consensus 109 ~~~ 111 (183)
T cd02005 109 IER 111 (183)
T ss_pred EEE
Confidence 544
No 174
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.58 E-value=8.2e-15 Score=152.74 Aligned_cols=76 Identities=38% Similarity=0.535 Sum_probs=68.5
Q ss_pred cccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeec
Q psy14416 163 LLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGG 242 (1065)
Q Consensus 163 l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g 242 (1065)
++...|.+++.+.. |+||+++|+|+|++++ .|+++||+++|||+|+|+.+||+|++++++|+++||+||++| +
T Consensus 35 ~~~~~~~~~~~~~~-g~mG~~lp~aiGaala----~~~~~vv~i~GDG~f~~~~~el~ta~~~~~p~~~iV~nN~~~--~ 107 (178)
T cd02002 35 LPLTRPGSYFTLRG-GGLGWGLPAAVGAALA----NPDRKVVAIIGDGSFMYTIQALWTAARYGLPVTVVILNNRGY--G 107 (178)
T ss_pred cccCCCCCeeccCC-ccccchHHHHHHHHhc----CCCCeEEEEEcCchhhccHHHHHHHHHhCCCeEEEEEcCccH--H
Confidence 43456778888877 9999999999999998 689999999999999999999999999999999999999987 6
Q ss_pred ccc
Q psy14416 243 FDE 245 (1065)
Q Consensus 243 ~~~ 245 (1065)
+.+
T Consensus 108 ~~~ 110 (178)
T cd02002 108 ALR 110 (178)
T ss_pred HHH
Confidence 654
No 175
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.57 E-value=7.2e-15 Score=163.92 Aligned_cols=128 Identities=18% Similarity=0.250 Sum_probs=100.2
Q ss_pred cccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHH
Q psy14416 868 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYA 947 (1065)
Q Consensus 868 g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~ 947 (1065)
|.++++|+ |+++|. |+++|| +++|||+|.++..++++
T Consensus 73 G~alpaAi--GaklA~--------pd~~VV---------------------------------~i~GDG~~~~mg~~eL~ 109 (301)
T PRK05778 73 GRAIAFAT--GAKLAN--------PDLEVI---------------------------------VVGGDGDLASIGGGHFI 109 (301)
T ss_pred ccHHHHHH--HHHHHC--------CCCcEE---------------------------------EEeCccHHHhccHHHHH
Confidence 88888888 999998 999999 99999997358899999
Q ss_pred HhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeE---eeCCHHHH
Q psy14416 948 SIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGY---LCTTVPQI 1024 (1065)
Q Consensus 948 ~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~l 1024 (1065)
++ +|+++|+++||+||++ |+..... ...-...+..+...+.....+.+||.++|+++|+.++ ++.+.+||
T Consensus 110 tA-----~r~nl~i~vIV~NN~~-YG~t~gQ-~s~t~~~g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL 182 (301)
T PRK05778 110 HA-----GRRNIDITVIVENNGI-YGLTKGQ-ASPTTPEGSKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQL 182 (301)
T ss_pred HH-----HHHCCCcEEEEEeCch-hhcccCc-ccCCcCCCcccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHH
Confidence 99 9999999999999966 5543321 1000011111111222233457999999999999997 79999999
Q ss_pred HHHHHHHHhcCCCCEEEEEEeC
Q psy14416 1025 KQAMKKCLQTTTRPSLINILIN 1046 (1065)
Q Consensus 1025 ~~~~~~~~~~~~~~~li~~~~~ 1046 (1065)
+++|+++++. ++|+||||.++
T Consensus 183 ~~ai~~A~~~-~GpalIeV~~~ 203 (301)
T PRK05778 183 VELIKKAISH-KGFAFIDVLSP 203 (301)
T ss_pred HHHHHHHHhC-CCCEEEEEcCC
Confidence 9999999987 99999999986
No 176
>PRK06163 hypothetical protein; Provisional
Probab=99.57 E-value=3.5e-15 Score=158.01 Aligned_cols=59 Identities=25% Similarity=0.468 Sum_probs=56.9
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhc-CCCEEEEEEcCCee
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRY-RLPVILVIVNNNGI 239 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~-~lpivivV~NN~gy 239 (1065)
+|+|||++|+|+|++++ +|+|+||+++|||||+|++|||+|++++ ++|+++||+||++|
T Consensus 56 ~GsMG~glpaAiGaalA----~p~r~Vv~i~GDG~f~m~~~eL~Ta~~~~~lpi~ivV~NN~~y 115 (202)
T PRK06163 56 LGSMGLAFPIALGVALA----QPKRRVIALEGDGSLLMQLGALGTIAALAPKNLTIIVMDNGVY 115 (202)
T ss_pred ecccccHHHHHHHHHHh----CCCCeEEEEEcchHHHHHHHHHHHHHHhcCCCeEEEEEcCCch
Confidence 89999999999999999 7999999999999999999999999987 68999999999988
No 177
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.55 E-value=6.9e-15 Score=153.41 Aligned_cols=77 Identities=39% Similarity=0.570 Sum_probs=70.4
Q ss_pred cccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeec
Q psy14416 163 LLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGG 242 (1065)
Q Consensus 163 l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g 242 (1065)
+....|++++.++.+|+||+++|+|+|++++ +|+|+||+++|||||+|+.+||+|++++++|+++||+||++| +
T Consensus 36 ~~~~~~~~~~~~~~~g~mG~~~~~aiGa~~a----~~~~~vv~i~GDG~f~~~~~el~t~~~~~lp~~~iv~NN~~~--~ 109 (178)
T cd02014 36 LRMNGKQRFILSGLLATMGNGLPGAIAAKLA----YPDRQVIALSGDGGFAMLMGDLITAVKYNLPVIVVVFNNSDL--G 109 (178)
T ss_pred cccCCCCcEEcCCCCchhhhHHHHHHHHHHh----CCCCcEEEEEcchHHHhhHHHHHHHHHhCCCcEEEEEECCch--h
Confidence 4446788888888899999999999999998 799999999999999999999999999999999999999987 6
Q ss_pred ccc
Q psy14416 243 FDE 245 (1065)
Q Consensus 243 ~~~ 245 (1065)
+.+
T Consensus 110 ~~~ 112 (178)
T cd02014 110 FIK 112 (178)
T ss_pred HHH
Confidence 644
No 178
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.52 E-value=1.3e-14 Score=148.02 Aligned_cols=68 Identities=28% Similarity=0.386 Sum_probs=60.5
Q ss_pred CCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhc-CCCEEEEEEcCCeeeeccc
Q psy14416 167 LPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRY-RLPVILVIVNNNGIYGGFD 244 (1065)
Q Consensus 167 ~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~-~lpivivV~NN~gy~~g~~ 244 (1065)
.|++++. +|+||+++|+|+|++++ .| |+||+++|||||+|+.+||+|++|+ ++|+++||+||++| |+.
T Consensus 34 ~~~~~~~---~gsmG~~lp~AiGa~~a----~~-~~Vv~i~GDG~f~m~~~el~t~~~~~~~~i~~vV~nN~~~--g~~ 102 (157)
T cd02001 34 RDGHFYM---LGSMGLAGSIGLGLALG----LS-RKVIVVDGDGSLLMNPGVLLTAGEFTPLNLILVVLDNRAY--GST 102 (157)
T ss_pred CCCCEEe---ecchhhHHHHHHHHHhc----CC-CcEEEEECchHHHhcccHHHHHHHhcCCCEEEEEEeCccc--ccc
Confidence 4555554 89999999999999998 45 9999999999999999999999999 59999999999988 553
No 179
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.52 E-value=4.5e-14 Score=155.70 Aligned_cols=127 Identities=12% Similarity=0.109 Sum_probs=98.3
Q ss_pred cccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcc-hhhH
Q psy14416 868 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD-ETTY 946 (1065)
Q Consensus 868 g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~-~~~~ 946 (1065)
|.++++|+ |++++. |+++|| +++|||+| ++. .++|
T Consensus 63 G~alp~Ai--GaklA~--------pd~~VV---------------------------------ai~GDG~~-~~iG~~eL 98 (280)
T PRK11869 63 GRAIPAAT--AVKATN--------PELTVI---------------------------------AEGGDGDM-YAEGGNHL 98 (280)
T ss_pred ccHHHHHH--HHHHHC--------CCCcEE---------------------------------EEECchHH-hhCcHHHH
Confidence 88888887 999998 999999 99999999 544 8999
Q ss_pred HHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEe---eCCHHH
Q psy14416 947 ASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYL---CTTVPQ 1023 (1065)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~ 1023 (1065)
+++ +|+++|+++||+||++ |+..... ...-...|..+...+.....+..||.++|+++|+.++. +.+++|
T Consensus 99 ~tA-----~r~nl~i~~IV~NN~~-Yg~t~~Q-~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~ 171 (280)
T PRK11869 99 IHA-----IRRNPDITVLVHNNQV-YGLTKGQ-ASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEE 171 (280)
T ss_pred HHH-----HHhCcCcEEEEEECHH-Hhhhcce-ecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHH
Confidence 999 9999999999999975 5533221 10000011111112223334568999999999999999 789999
Q ss_pred HHHHHHHHHhcCCCCEEEEEEeC
Q psy14416 1024 IKQAMKKCLQTTTRPSLINILIN 1046 (1065)
Q Consensus 1024 l~~~~~~~~~~~~~~~li~~~~~ 1046 (1065)
|+++++++++. ++|+||||.++
T Consensus 172 l~~~i~~Al~~-~Gp~lIeV~~p 193 (280)
T PRK11869 172 TKEILKEAIKH-KGLAIVDIFQP 193 (280)
T ss_pred HHHHHHHHHhC-CCCEEEEEECC
Confidence 99999999987 99999999986
No 180
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.51 E-value=5.1e-14 Score=155.37 Aligned_cols=140 Identities=16% Similarity=0.212 Sum_probs=103.3
Q ss_pred cccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccc-cccCcchhhH
Q psy14416 868 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNG-IYGGFDETTY 946 (1065)
Q Consensus 868 g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~-~~~~~~~~~~ 946 (1065)
|.++++|+ |++++. |+++|| +++||| +| ++..+++
T Consensus 62 G~alp~A~--GaklA~--------Pd~~VV---------------------------------~i~GDG~~f-~ig~~eL 97 (279)
T PRK11866 62 GRVLPIAT--GVKWAN--------PKLTVI---------------------------------GYGGDGDGY-GIGLGHL 97 (279)
T ss_pred ccHHHHHH--HHHHHC--------CCCcEE---------------------------------EEECChHHH-HccHHHH
Confidence 88888877 999998 999999 999999 79 9999999
Q ss_pred HHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEee---CCHHH
Q psy14416 947 ASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLC---TTVPQ 1023 (1065)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~ 1023 (1065)
.++ +|.++|+++||+||+. |+..... .......|..+...+.....+.+|+.++|+++|+.++.. .+.+|
T Consensus 98 ~tA-----~rrn~~i~vIV~nN~~-ygmtggQ-~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~ 170 (279)
T PRK11866 98 PHA-----ARRNVDITYIVSNNQV-YGLTTGQ-ASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKH 170 (279)
T ss_pred HHH-----HHHCcCcEEEEEEChh-hhhhccc-ccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHH
Confidence 999 9999999999999954 6644321 111011111111122222223479999999999987766 88899
Q ss_pred HHHHHHHHHhcCCCCEEEEEEeCCCCCCCcchhhhh
Q psy14416 1024 IKQAMKKCLQTTTRPSLINILINPSADRKPQNFSWL 1059 (1065)
Q Consensus 1024 l~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~ 1059 (1065)
|+++|+++++. ++|++|||..+=-..-+...+.|.
T Consensus 171 l~~~l~~Al~~-~Gps~I~v~~pC~~~n~~~~~~~~ 205 (279)
T PRK11866 171 LKEIIKEAIKH-KGFSFIDVLSPCVTFNKLNTYDWF 205 (279)
T ss_pred HHHHHHHHHhC-CCCEEEEEeCCCCCCCCcchhhhh
Confidence 99999999987 999999999863333233245563
No 181
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.51 E-value=2.3e-14 Score=149.63 Aligned_cols=68 Identities=26% Similarity=0.379 Sum_probs=60.6
Q ss_pred CCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcC-CCEEEEEEcCCeeeeccc
Q psy14416 167 LPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYR-LPVILVIVNNNGIYGGFD 244 (1065)
Q Consensus 167 ~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~-lpivivV~NN~gy~~g~~ 244 (1065)
.|..++. +|+||+++|+|+|++++ + +++||+++|||+|+|+.|||+|+++++ +|+++||+||++| |+.
T Consensus 34 ~~~~~~~---~gsmG~~lpaAiGa~la----~-~~~Vv~i~GDG~f~m~~~el~ta~~~~~~pv~~vV~NN~~y--g~~ 102 (181)
T TIGR03846 34 RPLNFYM---LGSMGLASSIGLGLALA----T-DRTVIVIDGDGSLLMNLGVLPTIAAESPKNLILVILDNGAY--GST 102 (181)
T ss_pred CCCCeee---ccccccHHHHHHHHHHc----C-CCcEEEEEcchHHHhhhhHHHHHHHhCCCCeEEEEEeCCcc--ccc
Confidence 3444443 89999999999999998 6 999999999999999999999999999 5999999999988 654
No 182
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.51 E-value=3.9e-14 Score=147.77 Aligned_cols=64 Identities=31% Similarity=0.396 Sum_probs=59.9
Q ss_pred cccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc-HHHHHHhhhcCCCEEEEEEcCCeeeecccc
Q psy14416 176 TFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS-GMELETLVRYRLPVILVIVNNNGIYGGFDE 245 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~-~~eL~t~vr~~lpivivV~NN~gy~~g~~~ 245 (1065)
.+|+||+++|+|+|++++ +|+++||+++|||+|+|+ .+||.|++|+++|+++||+||++| |+.+
T Consensus 49 ~~g~mG~gl~~AiGa~la----~p~~~Vv~i~GDG~f~~~g~~eL~ta~~~~l~i~vvV~nN~~~--g~~~ 113 (178)
T cd02008 49 TCTCMGASIGVAIGMAKA----SEDKKVVAVIGDSTFFHSGILGLINAVYNKANITVVILDNRTT--AMTG 113 (178)
T ss_pred ccccCccHHHHHhhHHhh----CCCCCEEEEecChHHhhccHHHHHHHHHcCCCEEEEEECCcce--eccC
Confidence 489999999999999999 799999999999999999 799999999999999999999987 6654
No 183
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.49 E-value=4.7e-14 Score=148.98 Aligned_cols=63 Identities=22% Similarity=0.343 Sum_probs=59.2
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCC-ccccHHHHHHhhhcCCCEEEEEEcCCeeeecccc
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSA-FGFSGMELETLVRYRLPVILVIVNNNGIYGGFDE 245 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGs-f~m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~ 245 (1065)
+++||+++|+|+|++++ +|+|+||+++|||| |+|+.|||+|++|+++|+++||+||++| |+.+
T Consensus 50 ~g~mG~glpaAiGa~la----~p~r~Vv~i~GDGs~f~m~~~eL~ta~~~~lpv~iiVlnN~~y--g~~~ 113 (193)
T cd03375 50 HTLHGRALAVATGVKLA----NPDLTVIVVSGDGDLAAIGGNHFIHAARRNIDITVIVHNNQIY--GLTK 113 (193)
T ss_pred hhhhccHHHHHHHHHHh----CCCCeEEEEeccchHhhccHHHHHHHHHhCCCeEEEEEcCccc--ccCC
Confidence 48999999999999999 79999999999999 6899999999999999999999999977 7655
No 184
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.48 E-value=6.5e-14 Score=147.17 Aligned_cols=66 Identities=30% Similarity=0.416 Sum_probs=59.7
Q ss_pred CCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCC-CEEEEEEcCCee
Q psy14416 167 LPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL-PVILVIVNNNGI 239 (1065)
Q Consensus 167 ~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~l-pivivV~NN~gy 239 (1065)
.|.+++. .|+||+++|+|+|++++ .|+++||+++|||+|+|+.+||+|++++++ |+++||+||++|
T Consensus 40 ~~~~~~~---~g~mG~~lpaAiGaala----~p~~~Vv~i~GDG~f~m~~~eL~ta~~~~l~~i~ivV~NN~~y 106 (188)
T cd03371 40 HAQDFLT---VGSMGHASQIALGIALA----RPDRKVVCIDGDGAALMHMGGLATIGGLAPANLIHIVLNNGAH 106 (188)
T ss_pred ccCceee---cCccccHHHHHHHHHHh----CCCCcEEEEeCCcHHHhhccHHHHHHHcCCCCcEEEEEeCchh
Confidence 3455554 38999999999999999 699999999999999999999999999997 699999999988
No 185
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.46 E-value=1.6e-13 Score=151.97 Aligned_cols=143 Identities=15% Similarity=0.197 Sum_probs=103.1
Q ss_pred cccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHH
Q psy14416 868 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYA 947 (1065)
Q Consensus 868 g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~ 947 (1065)
|+++++|+ |++++. |+++|| +++|||+|.++..++++
T Consensus 56 G~alPaAi--GaklA~--------Pd~~VV---------------------------------ai~GDG~f~~mg~~eL~ 92 (287)
T TIGR02177 56 GRALPVAT--GIKLAN--------PHLKVI---------------------------------VVGGDGDLYGIGGNHFV 92 (287)
T ss_pred ccHHHHHH--HHHHHC--------CCCcEE---------------------------------EEeCchHHHhccHHHHH
Confidence 88888887 999998 999999 99999997359999999
Q ss_pred HhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCC--CCCccHHHHHHHcCCCeEe-eCCHHHH
Q psy14416 948 SIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSL--GPSLRYEKMMAVFGHDGYL-CTTVPQI 1024 (1065)
Q Consensus 948 ~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~-~~~~~~l 1024 (1065)
++ +|+++|+++||+||++ |+..... .......|..+...+.... +.++++.++|+++|..+.. +.+.+||
T Consensus 93 tA-----~r~nl~I~vIVlNN~~-yGmt~gQ-~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~~~~~eL 165 (287)
T TIGR02177 93 AA-----GRRNVDITVIVHDNQV-YGLTKGQ-ASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVARGFSGDVAHL 165 (287)
T ss_pred HH-----HHhCcCeEEEEEECHH-HHhhhcc-cccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEEEEecCCHHHH
Confidence 99 9999999999999965 5533321 1000001111111111121 2356788888888887776 6999999
Q ss_pred HHHHHHHHhcCCCCEEEEEEeCCCCCCCcchhhhhHh
Q psy14416 1025 KQAMKKCLQTTTRPSLINILINPSADRKPQNFSWLTN 1061 (1065)
Q Consensus 1025 ~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~ 1061 (1065)
+++|+++++. ++|+||||..+=-...|...+.|.+.
T Consensus 166 ~~ai~~Al~~-~GpslIeV~~pC~t~n~~~~~~~~~~ 201 (287)
T TIGR02177 166 KEIIKEAINH-KGYALVDILQPCVTYNKINTYEWYRE 201 (287)
T ss_pred HHHHHHHHhC-CCCEEEEEeCCCCCCCcccHHHHHHH
Confidence 9999999987 99999999987333334445667643
No 186
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.41 E-value=1e-12 Score=135.25 Aligned_cols=70 Identities=50% Similarity=0.796 Sum_probs=64.0
Q ss_pred CCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCee
Q psy14416 166 NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGI 239 (1065)
Q Consensus 166 ~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy 239 (1065)
..|..++....+|+||+++|.|+|++++ .|+++|++++|||+|+|+.+||+|++++++|+++||+||++|
T Consensus 34 ~~~~~~~~~~~~g~~G~~~~~a~Gaa~a----~~~~~vv~~~GDG~~~~~~~~l~ta~~~~~~~~~iv~nN~~~ 103 (168)
T cd00568 34 RRGRRFLTSTGFGAMGYGLPAAIGAALA----APDRPVVCIAGDGGFMMTGQELATAVRYGLPVIVVVFNNGGY 103 (168)
T ss_pred CCCCcEEeCCCchhhhhhHHHHHHHHHh----CCCCcEEEEEcCcHHhccHHHHHHHHHcCCCcEEEEEECCcc
Confidence 3455566677789999999999999998 689999999999999999999999999999999999999977
No 187
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.38 E-value=6.1e-13 Score=138.85 Aligned_cols=58 Identities=26% Similarity=0.504 Sum_probs=55.2
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCC-CEEEEEEcCCee
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL-PVILVIVNNNGI 239 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~l-pivivV~NN~gy 239 (1065)
+|+||+++|+|+|++++ .| ++||+++|||+|+|+.+||+|++|+++ |+++||+||++|
T Consensus 41 ~g~mG~~lp~AiGaala----~~-~~vv~i~GDG~f~m~~~el~ta~~~~~~~l~vvV~NN~~~ 99 (179)
T cd03372 41 LGSMGLASSIGLGLALA----QP-RKVIVIDGDGSLLMNLGALATIAAEKPKNLIIVVLDNGAY 99 (179)
T ss_pred ccchhhHHHHHHHHHhc----CC-CcEEEEECCcHHHhCHHHHHHHHHcCCCCEEEEEEcCccc
Confidence 79999999999999998 56 999999999999999999999999995 799999999988
No 188
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.36 E-value=9.6e-13 Score=142.98 Aligned_cols=60 Identities=17% Similarity=0.133 Sum_probs=56.5
Q ss_pred cCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCC-ccccHHHHHHhhhcCCCEEEEEEcCCeeeecc
Q psy14416 178 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSA-FGFSGMELETLVRYRLPVILVIVNNNGIYGGF 243 (1065)
Q Consensus 178 gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGs-f~m~~~eL~t~vr~~lpivivV~NN~gy~~g~ 243 (1065)
++||+++|+|+|++++ +|+|+||+++|||+ |+|++|||+|++|+++|+++||+||++| |+
T Consensus 62 gsmG~GlpaAiGa~~a----~p~r~VV~i~GDG~~~~m~~~eL~ta~~~~~pv~~vVlNN~~y--g~ 122 (235)
T cd03376 62 AAVASGIEAALKALGR----GKDITVVAFAGDGGTADIGFQALSGAAERGHDILYICYDNEAY--MN 122 (235)
T ss_pred HHHHHHHHHHHHHhcc----CCCCeEEEEEcCchHHhhHHHHHHHHHHcCCCeEEEEECCccc--cc
Confidence 6999999999999887 79999999999999 5899999999999999999999999988 65
No 189
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.33 E-value=2.9e-12 Score=142.59 Aligned_cols=69 Identities=22% Similarity=0.371 Sum_probs=62.9
Q ss_pred ccccccc-cCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCC-ccccHHHHHHhhhcCCCEEEEEEcCCeeeecccc
Q psy14416 171 RLDAGTF-GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSA-FGFSGMELETLVRYRLPVILVIVNNNGIYGGFDE 245 (1065)
Q Consensus 171 ~l~~~~~-gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGs-f~m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~ 245 (1065)
++.+.++ ++||+++|+|+|++++ +|+++||+++|||+ |+|+.+||+|++|+|+|+++||+||++| |+.+
T Consensus 61 ~~~~~~~~g~mG~alpaAiGaklA----~Pd~~VV~i~GDG~~f~mg~~eL~tA~r~nl~i~vIV~NN~~y--Gmt~ 131 (286)
T PRK11867 61 YINTYGFHTIHGRALAIATGLKLA----NPDLTVIVVTGDGDALAIGGNHFIHALRRNIDITYILFNNQIY--GLTK 131 (286)
T ss_pred cccccchhhhhhcHHHHHHHHHHh----CCCCcEEEEeCccHHHhCCHHHHHHHHHhCCCcEEEEEeCHHH--hhhc
Confidence 5555555 9999999999999999 79999999999995 9999999999999999999999999977 8765
No 190
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.32 E-value=4.8e-12 Score=141.46 Aligned_cols=69 Identities=22% Similarity=0.331 Sum_probs=61.9
Q ss_pred ccccccc-cCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCc-cccHHHHHHhhhcCCCEEEEEEcCCeeeecccc
Q psy14416 171 RLDAGTF-GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAF-GFSGMELETLVRYRLPVILVIVNNNGIYGGFDE 245 (1065)
Q Consensus 171 ~l~~~~~-gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf-~m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~ 245 (1065)
++.+..+ ++||+++|+|+|+++| +|+++||+++|||+| +|+.+||+|++|+|+|+++||+||++| |+.+
T Consensus 62 yl~~~~~~g~mG~alpaAiGaklA----~pd~~VV~i~GDG~~~~mg~~eL~tA~r~nl~i~vIV~NN~~Y--G~t~ 132 (301)
T PRK05778 62 YFLSHGLHTLHGRAIAFATGAKLA----NPDLEVIVVGGDGDLASIGGGHFIHAGRRNIDITVIVENNGIY--GLTK 132 (301)
T ss_pred hcccCccchhhccHHHHHHHHHHH----CCCCcEEEEeCccHHHhccHHHHHHHHHHCCCcEEEEEeCchh--hccc
Confidence 4444444 8999999999999999 799999999999997 599999999999999999999999987 7765
No 191
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.29 E-value=3.3e-12 Score=139.02 Aligned_cols=66 Identities=18% Similarity=0.130 Sum_probs=58.1
Q ss_pred ccCCCcchhHHHHHHhh-hcccCCCCeEEEEeCCCCcc-ccHHHHHHhhhcCCCEEEEEEcCCeeeeccc
Q psy14416 177 FGTMGVGLGFALAAALY-CNHYAPGKRVVCVQGDSAFG-FSGMELETLVRYRLPVILVIVNNNGIYGGFD 244 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala-~~~~~p~rrvV~l~GDGsf~-m~~~eL~t~vr~~lpivivV~NN~gy~~g~~ 244 (1065)
.|+||+++|+|+||+++ .+...|+|+||+++|||+|+ |++|+|+|++++++|+++||+||++| |+.
T Consensus 63 ~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g~~~l~ta~~~~l~i~ivVlNN~~y--g~~ 130 (237)
T cd02018 63 ANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIGFGALSHSLFRGEDITVIVLDNEVY--SNT 130 (237)
T ss_pred HHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhccHHHHHHHHHcCCCeEEEEECCccc--cCC
Confidence 48999999999999987 11224899999999999997 89999999999999999999999977 654
No 192
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.29 E-value=1.3e-11 Score=136.88 Aligned_cols=70 Identities=23% Similarity=0.386 Sum_probs=62.1
Q ss_pred cccccccc-cCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcc-ccHHHHHHhhhcCCCEEEEEEcCCeeeecccc
Q psy14416 170 HRLDAGTF-GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFG-FSGMELETLVRYRLPVILVIVNNNGIYGGFDE 245 (1065)
Q Consensus 170 ~~l~~~~~-gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~-m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~ 245 (1065)
+++....+ +.||+++|+|+|++++ +|+++||+++|||+|+ |+.+||.|++|+|+|+++||+||++| ||.+
T Consensus 44 ~~l~~~~~~t~mG~alPaAiGaklA----~Pd~~VVai~GDG~f~~mg~~eL~tA~r~nl~I~vIVlNN~~y--Gmt~ 115 (287)
T TIGR02177 44 HYVNVNGFHGLHGRALPVATGIKLA----NPHLKVIVVGGDGDLYGIGGNHFVAAGRRNVDITVIVHDNQVY--GLTK 115 (287)
T ss_pred CeEecCCcccccccHHHHHHHHHHH----CCCCcEEEEeCchHHHhccHHHHHHHHHhCcCeEEEEEECHHH--Hhhh
Confidence 45555555 4589999999999999 7999999999999975 99999999999999999999999977 7765
No 193
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.28 E-value=5.2e-12 Score=139.67 Aligned_cols=63 Identities=24% Similarity=0.298 Sum_probs=57.9
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccc-cHHHHHHhhhcCCCEEEEEEcCCeeeecccc
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGF-SGMELETLVRYRLPVILVIVNNNGIYGGFDE 245 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m-~~~eL~t~vr~~lpivivV~NN~gy~~g~~~ 245 (1065)
.++||+++|+|+|+++| +|+++||+++|||+|+| +.+|+.|++|+++|+++||+||++| ||.+
T Consensus 67 ~~~~G~alPaAiGaklA----~Pdr~VV~i~GDG~f~~~g~~el~ta~r~nlpi~iIV~NN~~y--Gmt~ 130 (277)
T PRK09628 67 HTTHGRAVAYATGIKLA----NPDKHVIVVSGDGDGLAIGGNHTIHGCRRNIDLNFILINNFIY--GLTN 130 (277)
T ss_pred eeccccHHHHHHHHHHH----CCCCeEEEEECchHHHHhhHHHHHHHHHhCcCeEEEEEEChHH--hcce
Confidence 36999999999999999 79999999999999974 7899999999999999999999977 8754
No 194
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.24 E-value=1.6e-11 Score=135.73 Aligned_cols=63 Identities=21% Similarity=0.238 Sum_probs=58.6
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc-HHHHHHhhhcCCCEEEEEEcCCeeeecccc
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS-GMELETLVRYRLPVILVIVNNNGIYGGFDE 245 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~-~~eL~t~vr~~lpivivV~NN~gy~~g~~~ 245 (1065)
.+.||+++|+|+|++++ +|+++||+++|||+|+|. +|||+|++|+|+|+++||+||++| |+.+
T Consensus 59 ~~~mG~alp~AiGaklA----~pd~~VVai~GDG~~~~iG~~eL~tA~r~nl~i~~IV~NN~~Y--g~t~ 122 (280)
T PRK11869 59 HTLHGRAIPAATAVKAT----NPELTVIAEGGDGDMYAEGGNHLIHAIRRNPDITVLVHNNQVY--GLTK 122 (280)
T ss_pred CcccccHHHHHHHHHHH----CCCCcEEEEECchHHhhCcHHHHHHHHHhCcCcEEEEEECHHH--hhhc
Confidence 57799999999999999 799999999999999987 999999999999999999999988 7643
No 195
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.23 E-value=1.7e-11 Score=135.48 Aligned_cols=63 Identities=22% Similarity=0.312 Sum_probs=59.7
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCC-CccccHHHHHHhhhcCCCEEEEEEcCCeeeecccc
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDE 245 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDG-sf~m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~ 245 (1065)
.++||+++|+|+|+++| +|+++||+++||| +|+|+.|||.|++|+|+|+++||+||+.| ||..
T Consensus 58 ~~~~G~alp~A~GaklA----~Pd~~VV~i~GDG~~f~ig~~eL~tA~rrn~~i~vIV~nN~~y--gmtg 121 (279)
T PRK11866 58 HGIHGRVLPIATGVKWA----NPKLTVIGYGGDGDGYGIGLGHLPHAARRNVDITYIVSNNQVY--GLTT 121 (279)
T ss_pred ccccccHHHHHHHHHHH----CCCCcEEEEECChHHHHccHHHHHHHHHHCcCcEEEEEEChhh--hhhc
Confidence 68999999999999999 7999999999999 79999999999999999999999999977 7764
No 196
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.12 E-value=1.8e-10 Score=127.19 Aligned_cols=131 Identities=15% Similarity=0.013 Sum_probs=103.7
Q ss_pred eEEEEeccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccc
Q psy14416 859 VILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIY 938 (1065)
Q Consensus 859 ~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~ 938 (1065)
-+-...+++|+++++++ +++++..... ++++|+ +++|||+|
T Consensus 99 g~~~~~GslG~gl~~av--G~Ala~~~~~----~~~~v~---------------------------------~i~GDG~~ 139 (255)
T cd02012 99 GVEVTTGSLGQGLSVAV--GMALAEKLLG----FDYRVY---------------------------------VLLGDGEL 139 (255)
T ss_pred CeeeCCcchhhHHHHHH--HHHHHHHHhC----CCCEEE---------------------------------EEECcccc
Confidence 45566688899888888 8888764333 688999 99999999
Q ss_pred cCc--chhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeE
Q psy14416 939 GGF--DETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGY 1016 (1065)
Q Consensus 939 ~~~--~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 1016 (1065)
++ ...++.++ .++++|.+++|+|||++ +... .. .......||.+++++||++++
T Consensus 140 -~~G~~~eal~~a-----~~~~l~~li~vvdnN~~-~~~~-----------~~------~~~~~~~~~~~~~~a~G~~~~ 195 (255)
T cd02012 140 -QEGSVWEAASFA-----GHYKLDNLIAIVDSNRI-QIDG-----------PT------DDILFTEDLAKKFEAFGWNVI 195 (255)
T ss_pred -cccHHHHHHHHH-----HHcCCCcEEEEEECCCc-cccC-----------cH------hhccCchhHHHHHHHcCCeEE
Confidence 65 46789999 99999988889999883 2110 00 122246899999999999999
Q ss_pred eeC--CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 1017 LCT--TVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 1017 ~~~--~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
.|+ +.++|.++++++.+..++|++|++.|.+....+
T Consensus 196 ~v~G~d~~~l~~al~~a~~~~~~P~~I~~~t~kg~g~~ 233 (255)
T cd02012 196 EVDGHDVEEILAALEEAKKSKGKPTLIIAKTIKGKGVP 233 (255)
T ss_pred EECCCCHHHHHHHHHHHHHcCCCCEEEEEEeecccccC
Confidence 999 999999999999865479999999998866654
No 197
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.08 E-value=2.7e-10 Score=130.59 Aligned_cols=117 Identities=11% Similarity=0.018 Sum_probs=90.2
Q ss_pred cccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcc--h
Q psy14416 866 NNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD--E 943 (1065)
Q Consensus 866 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~--~ 943 (1065)
.+|.+++.++ |++++.+... |++.|+ ++.|||+| ++. .
T Consensus 123 ~vG~~lp~Ai--GaAla~k~~~----~~~~vv---------------------------------~~~GDGa~-~~g~~~ 162 (341)
T TIGR03181 123 PIGTQYLHAA--GVAYALKLRG----EDNVAV---------------------------------TYFGDGGT-SEGDFY 162 (341)
T ss_pred hHhcchhHHH--hHHHHHHhhC----CCCEEE---------------------------------EEecCCcc-ccChHH
Confidence 3466666665 6666654444 888999 99999999 766 3
Q ss_pred hhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHH
Q psy14416 944 TTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQ 1023 (1065)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 1023 (1065)
.++.++ .++++|+++||.||+ +....+.. ......||.++|++||+.+++|+..++
T Consensus 163 EaL~tA-----~~~~LPvi~Vv~NN~-~~~~~~~~------------------~~~~~~d~~~~a~a~G~~~~~Vdg~d~ 218 (341)
T TIGR03181 163 EALNFA-----GVFKAPVVFFVQNNQ-WAISVPRS------------------KQTAAPTLAQKAIAYGIPGVQVDGNDV 218 (341)
T ss_pred HHHHHH-----hccCCCEEEEEECCC-Cccccchh------------------hhhCCcCHHHHHhhCCCCEEEECCCCH
Confidence 678899 999999999999995 22122111 001357899999999999999999998
Q ss_pred H------HHHHHHHHhcCCCCEEEEEEeCC
Q psy14416 1024 I------KQAMKKCLQTTTRPSLINILINP 1047 (1065)
Q Consensus 1024 l------~~~~~~~~~~~~~~~li~~~~~~ 1047 (1065)
+ ++|++.+.+. ++|+|||+.+.|
T Consensus 219 ~av~~a~~~A~~~a~~~-~gP~lIev~t~R 247 (341)
T TIGR03181 219 LAVYAVTKEAVERARSG-GGPTLIEAVTYR 247 (341)
T ss_pred HHHHHHHHHHHHHHHcC-CCCEEEEEEeec
Confidence 6 8899999876 899999999966
No 198
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=98.98 E-value=2.3e-09 Score=118.45 Aligned_cols=64 Identities=28% Similarity=0.328 Sum_probs=59.2
Q ss_pred cccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccc--cHHHHHHhhhcCCCEEEEEEcCCee
Q psy14416 176 TFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGF--SGMELETLVRYRLPVILVIVNNNGI 239 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m--~~~eL~t~vr~~lpivivV~NN~gy 239 (1065)
..|+||+++|.|+|++++.....++++|+|++|||+|+| +.++|.++.++++|.+++|+||++|
T Consensus 103 ~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~ 168 (255)
T cd02012 103 TTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRI 168 (255)
T ss_pred CCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCc
Confidence 459999999999999999877778999999999999998 5899999999999999999999977
No 199
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=98.98 E-value=2.8e-09 Score=120.13 Aligned_cols=84 Identities=26% Similarity=0.308 Sum_probs=68.4
Q ss_pred CCCcccccccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEE
Q psy14416 156 GKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVI 233 (1065)
Q Consensus 156 ~rpGP~~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV 233 (1065)
++.||.|+....++ + .+..|+||+++|.|+|++++.+...|++++|+++|||+|+|. .++|.+++++++|+++||
T Consensus 85 G~~g~~h~~~~~~~-~--~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv 161 (293)
T cd02000 85 GRGGSMHIGDKEKN-F--FGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVC 161 (293)
T ss_pred CCCCCCCCCchhcC-c--cccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEE
Confidence 56677777443322 1 223689999999999999998888899999999999999987 478999999999999999
Q ss_pred EcCCeeeecccc
Q psy14416 234 VNNNGIYGGFDE 245 (1065)
Q Consensus 234 ~NN~gy~~g~~~ 245 (1065)
.||+ | ++..
T Consensus 162 ~NN~-~--~i~~ 170 (293)
T cd02000 162 ENNG-Y--AIST 170 (293)
T ss_pred eeCC-e--eccC
Confidence 9995 7 5543
No 200
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=98.97 E-value=2e-09 Score=121.25 Aligned_cols=121 Identities=17% Similarity=0.120 Sum_probs=89.1
Q ss_pred EeccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcc
Q psy14416 863 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 942 (1065)
Q Consensus 863 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~ 942 (1065)
..+.+|++++.++ +++++.+... |++.|+ +++|||+| ++.
T Consensus 102 ~~g~lG~~~p~a~--G~a~a~k~~~----~~~~vv---------------------------------~~~GDGa~-~~g 141 (293)
T cd02000 102 GNGIVGGQVPLAA--GAALALKYRG----EDRVAV---------------------------------CFFGDGAT-NEG 141 (293)
T ss_pred cccccccchhHHH--HHHHHHHHhC----CCCEEE---------------------------------EEeCCCcc-ccc
Confidence 3456688777777 7777765444 778888 99999999 665
Q ss_pred h--hhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCC
Q psy14416 943 E--TTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTT 1020 (1065)
Q Consensus 943 ~--~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 1020 (1065)
. .++.++ .++++|+++||.|| + |+...... ...+..||.+++++||+.+++|+.
T Consensus 142 ~~~E~l~~A-----~~~~lPvi~vv~NN-~-~~i~~~~~-----------------~~~~~~~~~~~a~a~G~~~~~Vdg 197 (293)
T cd02000 142 DFHEALNFA-----ALWKLPVIFVCENN-G-YAISTPTS-----------------RQTAGTSIADRAAAYGIPGIRVDG 197 (293)
T ss_pred hHHHHHHHH-----HhhCCCEEEEEeeC-C-eeccCCHH-----------------HHhCCccHHHHHHhCCCCEEEECC
Confidence 3 568888 89999999998888 5 44211110 001457899999999999999975
Q ss_pred --HHHHHHHHHHHHh---cCCCCEEEEEEeCC
Q psy14416 1021 --VPQIKQAMKKCLQ---TTTRPSLINILINP 1047 (1065)
Q Consensus 1021 --~~~l~~~~~~~~~---~~~~~~li~~~~~~ 1047 (1065)
++++.++++++++ ..++|+|||+.+.+
T Consensus 198 ~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r 229 (293)
T cd02000 198 NDVLAVYEAAKEAVERARAGGGPTLIEAVTYR 229 (293)
T ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Confidence 4577777766653 23799999999965
No 201
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=98.89 E-value=5.1e-09 Score=118.90 Aligned_cols=118 Identities=16% Similarity=0.088 Sum_probs=86.1
Q ss_pred ccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcch-
Q psy14416 865 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE- 943 (1065)
Q Consensus 865 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~- 943 (1065)
+.+|.+++.++ |++++...+. +++.|+ +++|||+| +...
T Consensus 110 g~~G~~lp~Ai--Gaa~A~~~~~----~~~~vv---------------------------------~~~GDGa~-~~g~~ 149 (315)
T TIGR03182 110 GIVGAQVPLAT--GLAFANKYRG----NDNVTA---------------------------------CFFGDGAA-NQGQF 149 (315)
T ss_pred CcccccccHHH--HHHHHHHHhC----CCCEEE---------------------------------EEeCCCcc-cccHH
Confidence 45588888877 8888775544 678888 99999999 5432
Q ss_pred -hhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHH
Q psy14416 944 -TTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVP 1022 (1065)
Q Consensus 944 -~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 1022 (1065)
.++.++ .++++|+++||.|| + |+...... . ..+..||.++|++||+.+++|+..+
T Consensus 150 ~ealn~A-----~~~~lPvi~vv~NN-~-yg~s~~~~-~----------------~~~~~~~a~~A~a~G~~~~~Vdg~d 205 (315)
T TIGR03182 150 YESFNMA-----ALWKLPVIFVIENN-L-YAMGTSVE-R----------------SSSVTDLYKRGESFGIPGERVDGMD 205 (315)
T ss_pred HHHHHHh-----hccCcCEEEEEEcC-C-ccccCCHH-H----------------HhCCcCHHHHHHhCCCCEEEECCCC
Confidence 346666 77899999999999 5 44322110 0 1135789999999999999999855
Q ss_pred H------HHHHHHHHHhcCCCCEEEEEEeCC
Q psy14416 1023 Q------IKQAMKKCLQTTTRPSLINILINP 1047 (1065)
Q Consensus 1023 ~------l~~~~~~~~~~~~~~~li~~~~~~ 1047 (1065)
. +++|++.+.+. ++|+|||+.+.+
T Consensus 206 ~~av~~a~~~A~~~ar~~-~gP~lIe~~t~R 235 (315)
T TIGR03182 206 VLAVREAAKEAVERARSG-KGPILLEMKTYR 235 (315)
T ss_pred HHHHHHHHHHHHHHHHcc-CCCEEEEEeCCc
Confidence 3 45566655554 799999999955
No 202
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=98.89 E-value=7.3e-09 Score=117.67 Aligned_cols=84 Identities=24% Similarity=0.347 Sum_probs=67.5
Q ss_pred CCCcccccccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEE
Q psy14416 156 GKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVI 233 (1065)
Q Consensus 156 ~rpGP~~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV 233 (1065)
||.||.|+.. +..-+ .+..|+||+++|.|+|++++.+...+++.||+++|||+|++. .++|.++.++++|+++||
T Consensus 91 Gr~g~~h~~~--~~~~~-~~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv 167 (315)
T TIGR03182 91 GKGGSMHMFD--REKNF-YGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVI 167 (315)
T ss_pred CCCCCCCcCc--hhhCc-ccCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEE
Confidence 6677777733 22222 234689999999999999998777789999999999999876 377999999999999999
Q ss_pred EcCCeeeecccc
Q psy14416 234 VNNNGIYGGFDE 245 (1065)
Q Consensus 234 ~NN~gy~~g~~~ 245 (1065)
+||+ | |+..
T Consensus 168 ~NN~-y--g~s~ 176 (315)
T TIGR03182 168 ENNL-Y--AMGT 176 (315)
T ss_pred EcCC-c--cccC
Confidence 9994 7 5544
No 203
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=98.87 E-value=9.2e-09 Score=104.53 Aligned_cols=99 Identities=24% Similarity=0.426 Sum_probs=75.6
Q ss_pred HHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCC------CCCCCCCCcccccH-------HHHhhh
Q psy14416 490 KQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMG------KGVVPDAHPNCVSA-------ARTHAL 556 (1065)
Q Consensus 490 ~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~g------kg~v~~~hpl~lg~-------~~~~al 556 (1065)
++++++|++||||+|++|.++.+.++.+++++|+|++++||++++++ ||++ +||..+|. ...+.+
T Consensus 18 ~~aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~~~~~~~kgv~--~~~~~lg~~g~~~~~p~~e~~ 95 (162)
T TIGR00315 18 KLVAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADTYRALIEAGIE--SEEMNLHEITQFLADPSWEGF 95 (162)
T ss_pred HHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCccccccccCCee--cCCCCHHHHHHhccCchhhhc
Confidence 56788899999999999999987888999999999999999999998 8887 66666663 234556
Q ss_pred ---cCCCEEEEeCCcccccc-ccCCCccccCCCeEEEec
Q psy14416 557 ---QNADLVLLLGARLNWIL-HFGRAPRFKSNVKIIQVD 591 (1065)
Q Consensus 557 ---~~aDlVI~iG~~~~~~~-~~g~~~~~~~~~~iI~Vd 591 (1065)
.++|+||.+|+++.-.. ...-++.|. +.+.|.++
T Consensus 96 ~g~g~~DlvlfvG~~~y~~~~~ls~lk~f~-~~~~i~l~ 133 (162)
T TIGR00315 96 DGEGNYDLVLFLGIIYYYLSQMLSSLKHFS-HIVTIAID 133 (162)
T ss_pred cCCCCcCEEEEeCCcchHHHHHHHHHHhhc-CcEEEEec
Confidence 79999999999884211 111233354 55666555
No 204
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=98.86 E-value=1.1e-08 Score=104.54 Aligned_cols=99 Identities=24% Similarity=0.323 Sum_probs=76.7
Q ss_pred HHHHHHHHhCCCcEEEEccCCCc-hhHHHHHHHHHhhcCCCEEecCC------CCCCCCCCCcccccHH-------HHhh
Q psy14416 490 KQASRLILEAKAPLVIIGKGAAY-SQAETELLSFVNSFNLPFLPTPM------GKGVVPDAHPNCVSAA-------RTHA 555 (1065)
Q Consensus 490 ~~~ae~L~~AkrPvIlvG~g~~~-~~a~~~L~~LAe~lg~PV~tt~~------gkg~v~~~hpl~lg~~-------~~~a 555 (1065)
+.++++|++||||+|++|.++.. .++.+++++|+|++++||+++++ +||++++ |..+|.. ..+.
T Consensus 25 ~~aa~lI~~AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~~~~~~~~kgv~~~--~~~lg~lg~~~~~p~~e~ 102 (171)
T PRK00945 25 KIAAMMIKKAKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGGSYKGLIDKGVDAK--YINLHELTNYLKDPNWKG 102 (171)
T ss_pred HHHHHHHHhCCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccccccccccCCccCC--cccHHHHHhhccCchhhh
Confidence 56788999999999999999987 77889999999999999999999 8899887 7777642 3445
Q ss_pred h---cCCCEEEEeCCcccccc-ccCCCccccCCCeEEEec
Q psy14416 556 L---QNADLVLLLGARLNWIL-HFGRAPRFKSNVKIIQVD 591 (1065)
Q Consensus 556 l---~~aDlVI~iG~~~~~~~-~~g~~~~~~~~~~iI~Vd 591 (1065)
+ .++|+||.+|+++.... ...-++.|.+ .+.|.++
T Consensus 103 ~~g~~~~DlvlfvG~~~~~~~~~l~~lk~f~~-~~~~~~~ 141 (171)
T PRK00945 103 LDGNGNYDLVIFIGVTYYYASQGLSALKHFSP-LKTITID 141 (171)
T ss_pred hcCCCCcCEEEEecCCchhHHHHHHHHhhcCC-ceEEEec
Confidence 5 69999999999986321 1112334555 5666555
No 205
>PRK05899 transketolase; Reviewed
Probab=98.81 E-value=5.8e-08 Score=120.46 Aligned_cols=114 Identities=17% Similarity=-0.007 Sum_probs=75.6
Q ss_pred eEE-EccCCchHHHHHHHHHHHh-CCCeEEEEeccccccccccccccccccCcceEeecCCCccCC-CCCCCCCccChhh
Q psy14416 306 HYI-GMRNEQAACYAAQAIGYLT-KKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDH-EGIGGFQECPQVE 382 (1065)
Q Consensus 306 ~~i-~~~~E~~A~~~A~g~ar~t-gkpgv~~~tsGpG~~N~~~av~eA~~~~vPLlvItg~~p~~~-~g~ga~Q~idQ~~ 382 (1065)
|++ .-.-|+++.-+|.|+|... .+|.+ .|..+=+.-++.++..+...+.|++++........ ..-..+|.+++..
T Consensus 368 R~~d~GIaE~~~vg~A~GlA~~G~~~pv~--~t~~~F~~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tHq~~edia 445 (624)
T PRK05899 368 RYIHYGVREFAMAAIANGLALHGGFIPFG--GTFLVFSDYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTHQPVEQLA 445 (624)
T ss_pred CeeeeChhHHHHHHHHHHHHHcCCCeEEE--EEcHHHHHHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCcccHHHHH
Confidence 455 3677999999999999765 34333 33333344455556666678889998865443322 2234568888888
Q ss_pred hhcccccEE-eeCCChhhHHHHHHHHHHHhhcCCCCEEEEecCh
Q psy14416 383 LARPYCKYS-ARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPA 425 (1065)
Q Consensus 383 l~~~~~k~s-~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~ 425 (1065)
+++.+.... +...++.++...++.|++ ..++||+|-+|.
T Consensus 446 ~~r~iP~~~V~~P~d~~e~~~~l~~a~~----~~~~P~~ir~~r 485 (624)
T PRK05899 446 SLRAIPNLTVIRPADANETAAAWKYALE----RKDGPSALVLTR 485 (624)
T ss_pred HHHhCCCcEEEeCCCHHHHHHHHHHHHH----cCCCCEEEEEeC
Confidence 999887765 445677766666666653 335899999984
No 206
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=98.81 E-value=1.2e-08 Score=117.02 Aligned_cols=61 Identities=18% Similarity=0.121 Sum_probs=57.7
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCC
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNN 237 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~ 237 (1065)
.+++|+++|.|+|++++.+.+.|+++|||+.|||+|+|+ .++|.|++++++|+++||+||+
T Consensus 121 ~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~ 183 (341)
T TIGR03181 121 NIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQ 183 (341)
T ss_pred CchHhcchhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCC
Confidence 478999999999999998888899999999999999999 5889999999999999999996
No 207
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=98.78 E-value=3.4e-08 Score=113.22 Aligned_cols=79 Identities=30% Similarity=0.476 Sum_probs=63.8
Q ss_pred CCCcccccccCCCccccccccccCCCcchhHHHHHHhhhcccC-------CCCeEEEEeCCCCcccc--HHHHHHhhhcC
Q psy14416 156 GKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYA-------PGKRVVCVQGDSAFGFS--GMELETLVRYR 226 (1065)
Q Consensus 156 ~rpGP~~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~-------p~rrvV~l~GDGsf~m~--~~eL~t~vr~~ 226 (1065)
||-|+.|+.. .+..++ +.+++||+++|.|+|++++.+... |++.|||++|||+|+.. .++|.++++++
T Consensus 109 Gr~gs~H~~~-~~~~~~--~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~ 185 (341)
T CHL00149 109 GRGGSMHIFS-APHNFL--GGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQFFECLNMAVLWK 185 (341)
T ss_pred CCCCCccccc-hhcCcc--CCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhcHHHHHHHHHhhcC
Confidence 6778777743 444455 467999999999999999864432 78999999999999732 23699999999
Q ss_pred CCEEEEEEcCC
Q psy14416 227 LPVILVIVNNN 237 (1065)
Q Consensus 227 lpivivV~NN~ 237 (1065)
+|+++||.||+
T Consensus 186 LPvifvv~NN~ 196 (341)
T CHL00149 186 LPIIFVVENNQ 196 (341)
T ss_pred CCEEEEEEeCC
Confidence 99999999997
No 208
>PRK05899 transketolase; Reviewed
Probab=98.76 E-value=1.7e-08 Score=125.23 Aligned_cols=134 Identities=15% Similarity=0.042 Sum_probs=100.9
Q ss_pred cceEEEEeccccccccccchhhhhheeccccc------cccccEEEEEccCcccCCccccccceeccccceeeeccceEE
Q psy14416 857 LPVILVIVNNNGIYGGFDETTYASIVESGEVT------TVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 930 (1065)
Q Consensus 857 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1065)
.|-+....+++|.+++.++ |++++...... ....+++|+
T Consensus 110 ~~~~~~~~G~lG~gl~~Ai--G~Ala~~~~~~~~~~~~~~~~~~~v~--------------------------------- 154 (624)
T PRK05899 110 TPGVETTTGPLGQGLANAV--GMALAEKYLAALFNRPGLDIVDHYTY--------------------------------- 154 (624)
T ss_pred CCCeeeCCcchhhhHHHHH--HHHHHHHHhhhhcCCccccCcCCeEE---------------------------------
Confidence 4666666788888888888 88887632110 000156788
Q ss_pred EEeccccccCcch-hh-HHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHH
Q psy14416 931 IVNNNGIYGGFDE-TT-YASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMM 1008 (1065)
Q Consensus 931 ~~~gd~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1065)
+++|||+| ++.. +| +.++ .+++||.+++|+|||++ +. . +.. ......||.+++
T Consensus 155 ~v~GDG~~-~~g~~~Eal~~A-----~~~~L~~li~v~dnN~~-~~-~----------~~~-------~~~~~~~~~~~~ 209 (624)
T PRK05899 155 VLCGDGDL-MEGISHEACSLA-----GHLKLGNLIVIYDDNRI-SI-D----------GPT-------EGWFTEDVKKRF 209 (624)
T ss_pred EEECcchh-hchHHHHHHHHH-----HHhCCCCEEEEEECCCC-cc-c----------ccc-------cccccccHHHHh
Confidence 99999999 7775 44 8888 88999999999999983 21 1 000 111247899999
Q ss_pred HHcCCCeEeeC--CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 1009 AVFGHDGYLCT--TVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 1009 ~~~g~~~~~~~--~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
++||+++.+|+ +.++|.++++++.+. ++|++|++.|.+....
T Consensus 210 ~a~G~~~~~VdG~d~~~l~~al~~a~~~-~~P~vI~v~t~kg~g~ 253 (624)
T PRK05899 210 EAYGWHVIEVDGHDVEAIDAAIEEAKAS-TKPTLIIAKTIIGKGA 253 (624)
T ss_pred ccCCCeEEEECCCCHHHHHHHHHHHHhc-CCCEEEEEEeEeccCC
Confidence 99999999999 999999999999876 8999999999765554
No 209
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=98.75 E-value=7.1e-08 Score=118.62 Aligned_cols=242 Identities=16% Similarity=0.116 Sum_probs=143.9
Q ss_pred cccCCCcchhHHHHHHhhhccc-CCCCeEEEEeCCCCcc--ccHHHHHHhhhcCCCEEEEEEcCCeee------------
Q psy14416 176 TFGTMGVGLGFALAAALYCNHY-APGKRVVCVQGDSAFG--FSGMELETLVRYRLPVILVIVNNNGIY------------ 240 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~-~p~rrvV~l~GDGsf~--m~~~eL~t~vr~~lpivivV~NN~gy~------------ 240 (1065)
..|++|+++|.|+|++++.+.. .++++|+|++|||+++ |+.++|.++.+++.|++ +|+||++|.
T Consensus 115 ~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Eal~~A~~~~~nli-~IvdnN~~~i~~~~~~~~~~~ 193 (580)
T PRK05444 115 GAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEALNNAGDLKSDLI-VILNDNEMSISPNVGALSNYL 193 (580)
T ss_pred CCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHHHHHHHhhCCCEE-EEEECCCCcCCCcchhhhhhh
Confidence 3689999999999999997665 5889999999999996 89999999999998885 666666661
Q ss_pred -----------eccccc-h---hhhhhhhhc--------------------cCCC---cccc------------------
Q psy14416 241 -----------GGFDEA-T---YAWLDIIKK--------------------SNMS---EDYD------------------ 264 (1065)
Q Consensus 241 -----------~g~~~~-~---~~~~~l~~~--------------------~g~~---~~~~------------------ 264 (1065)
+|.... . .+...+... .+.+ .+..
T Consensus 194 ~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~~~P~lI~~~T~kg~G~~~~e~~~~~~h~~~~~~~~~~~~~~~ 273 (580)
T PRK05444 194 ARLRSSTLFEELGFNYIGPIDGHDLDALIETLKNAKDLKGPVLLHVVTKKGKGYAPAEADPIKYHGVGKFDPETGEQPKS 273 (580)
T ss_pred ccccHHHHHHHcCCCeeeeeCCCCHHHHHHHHHHHHhCCCCEEEEEEecCCcCCChhhcCccccCCCCCCCcccCCcccc
Confidence 000000 0 111111100 0000 0000
Q ss_pred ---cCccHHHHHHHHHHhcCc--eEEEee-cC---C-chhhhHHHhhcCCceEE-EccCCchHHHHHHHHHHHhCCCeEE
Q psy14416 265 ---EELSANQVIAQALKFQGI--EYVFGI-VG---I-PVIELAMACQQEGIHYI-GMRNEQAACYAAQAIGYLTKKPGVC 333 (1065)
Q Consensus 265 ---~~~~~~~~l~~~L~~~GV--~~vfg~-pG---~-~~~~l~~al~~~~i~~i-~~~~E~~A~~~A~g~ar~tgkpgv~ 333 (1065)
...+..+++.++|.+..= ..++++ ++ + ....+.+.+ .=|++ .-.-|++.+-+|.|+|. .|...++
T Consensus 274 ~~~~~~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~~~~~f~~~~---p~R~i~~GIaE~~mvg~A~GlA~-~G~~p~~ 349 (580)
T PRK05444 274 SKPGKPSYTKVFGETLCELAEKDPKIVAITAAMPEGTGLVKFSKRF---PDRYFDVGIAEQHAVTFAAGLAT-EGLKPVV 349 (580)
T ss_pred CCCCcccHHHHHHHHHHHHHhhCCCEEEEECCcCCCCCHHHHHHHh---hhhccCCChHHHHHHHHHHHHHH-CCCeeEE
Confidence 001234455555554422 233432 22 1 112222222 12433 45678999999999998 4543333
Q ss_pred EEecccccccccccccc-ccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEE-eeCCChhhHHHHHHHHHHHh
Q psy14416 334 LVVSGPGLLHTFGGMAN-AQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYS-ARPPNIHLIGQHVEKAVRLS 411 (1065)
Q Consensus 334 ~~tsGpG~~N~~~av~e-A~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s-~~l~~~~~i~~~i~~A~~~A 411 (1065)
.|..+=+.-++..+.. +-..+.|++++..........-..+|.+.+..+++.+..+. +...++.++...++.|++
T Consensus 350 -~~f~~F~~ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a~~-- 426 (580)
T PRK05444 350 -AIYSTFLQRAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTALA-- 426 (580)
T ss_pred -EeeHHHHHHHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh--
Confidence 3344433333443333 55689999999643333222234578888899999998875 455676666666655553
Q ss_pred hcCCCCEEEEecChhh
Q psy14416 412 TFGKPGVSYLDFPANL 427 (1065)
Q Consensus 412 ~~~~~GPV~L~iP~Dv 427 (1065)
..+|||+|-+|...
T Consensus 427 --~~~~P~~ir~~r~~ 440 (580)
T PRK05444 427 --YDDGPIAIRYPRGN 440 (580)
T ss_pred --CCCCcEEEEecCCC
Confidence 33699999998654
No 210
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=98.71 E-value=2.8e-08 Score=113.87 Aligned_cols=120 Identities=21% Similarity=0.187 Sum_probs=87.5
Q ss_pred eccccccccccchhhhhheeccccc---cccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccC
Q psy14416 864 VNNNGIYGGFDETTYASIVESGEVT---TVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 940 (1065)
Q Consensus 864 ~~~~g~~~g~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~ 940 (1065)
.+.+|.+++.++ |++++...+.. +..|++.|+ +++|||+| +
T Consensus 127 ~g~lG~~lp~Av--Gaa~A~k~~~~~~~~~~~~~vvv---------------------------------~~~GDGa~-~ 170 (341)
T CHL00149 127 FAFIGEGIPIAL--GAAFQSIYRQQVLKEVQPLRVTA---------------------------------CFFGDGTT-N 170 (341)
T ss_pred ChhhhccHHHHH--HHHHHHHHhccccccCCCCCEEE---------------------------------EEeCCchh-h
Confidence 355588888877 88887432210 112577888 99999999 4
Q ss_pred cchh---hHHHhhccCccccCCCEEEEEEcCC-cccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeE
Q psy14416 941 FDET---TYASIVESGEVTTVLPVILVIVNNN-GIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGY 1016 (1065)
Q Consensus 941 ~~~~---~~~~~~~~~~~~~~~~~~~~v~nn~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 1016 (1065)
..+ ++.++ .++++|+++||.||+ +| +. +.. . .....||.+.|++||+.++
T Consensus 171 -~G~~~Ealn~A-----~~~~LPvifvv~NN~~~i-~~-~~~-----------------~-~~~~~d~a~~a~a~G~~~~ 224 (341)
T CHL00149 171 -NGQFFECLNMA-----VLWKLPIIFVVENNQWAI-GM-AHH-----------------R-STSIPEIHKKAEAFGLPGI 224 (341)
T ss_pred -hcHHHHHHHHH-----hhcCCCEEEEEEeCCeee-ec-chh-----------------h-eeCCccHHHHHHhCCCCEE
Confidence 433 46666 789999999999997 33 21 110 0 0124789999999999999
Q ss_pred eeCCHHHH------HHHHHHHHhcCCCCEEEEEEeC
Q psy14416 1017 LCTTVPQI------KQAMKKCLQTTTRPSLINILIN 1046 (1065)
Q Consensus 1017 ~~~~~~~l------~~~~~~~~~~~~~~~li~~~~~ 1046 (1065)
+|+..+.+ ++|++++.+. ++|+|||+.+-
T Consensus 225 ~Vdg~d~~av~~a~~~A~~~ar~~-~gP~lIev~ty 259 (341)
T CHL00149 225 EVDGMDVLAVREVAKEAVERARQG-DGPTLIEALTY 259 (341)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhC-CCCEEEEEEEe
Confidence 99998874 7888888875 89999999993
No 211
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=98.60 E-value=8.9e-07 Score=109.68 Aligned_cols=111 Identities=12% Similarity=0.099 Sum_probs=72.6
Q ss_pred ccCCchHHHHHHHHHHHhCCCeEEEEecccccccccccc-ccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccc
Q psy14416 310 MRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGM-ANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYC 388 (1065)
Q Consensus 310 ~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av-~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~ 388 (1065)
-.-|++++-+|.|+|. .|...++ .|..+=+.-++..| .++-..+.|++++.-.....-.+-..+|.+.+..+++.+-
T Consensus 367 GIaE~~mvg~AaGlA~-~G~~P~v-~~f~~Fl~ra~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq~~~dia~lr~iP 444 (641)
T PRK12571 367 GIAEQHAVTFAAGLAA-AGLKPFC-AVYSTFLQRGYDQLLHDVALQNLPVRFVLDRAGLVGADGATHAGAFDLAFLTNLP 444 (641)
T ss_pred CccHHHHHHHHHHHHH-CCCEEEE-EehHHHHHHHHHHHHHHHhhcCCCeEEEEECCCcCCCCCccccccHHHHHHhcCC
Confidence 3468888889999998 5543333 33555444566666 4467789999987622221111223578888889999998
Q ss_pred cEEe-eCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 389 KYSA-RPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 389 k~s~-~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
.+.. ...++.++...++.|++ ...||++|-+|..
T Consensus 445 nl~V~~Psd~~e~~~~l~~a~~----~~~~P~~ir~~r~ 479 (641)
T PRK12571 445 NMTVMAPRDEAELRHMLRTAAA----HDDGPIAVRFPRG 479 (641)
T ss_pred CCEEEeeCCHHHHHHHHHHHHh----CCCCcEEEEEecC
Confidence 8754 45666666666666653 2369999999965
No 212
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=98.50 E-value=8.3e-07 Score=104.24 Aligned_cols=79 Identities=24% Similarity=0.350 Sum_probs=61.4
Q ss_pred CCCcccccccCCCccccccccccCCCcchhHHHHHHhhhccc-------CCCCeEEEEeCCCCcccc--HHHHHHhhhcC
Q psy14416 156 GKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHY-------APGKRVVCVQGDSAFGFS--GMELETLVRYR 226 (1065)
Q Consensus 156 ~rpGP~~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~-------~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~ 226 (1065)
++-|+.|+. .+..-+ .+.++.||+++|.|+|++++.+.. .+++.|||++|||+++.. .++|.+++.++
T Consensus 175 GrggsmH~~--~~~~~~-~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~ 251 (433)
T PLN02374 175 GQGGSMHMF--SKEHNL-LGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWK 251 (433)
T ss_pred CCCCcCccC--chhhCC-CCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccChHHHHHHHHHHhC
Confidence 455556662 222222 245789999999999999997654 368999999999999755 45899999999
Q ss_pred CCEEEEEEcCC
Q psy14416 227 LPVILVIVNNN 237 (1065)
Q Consensus 227 lpivivV~NN~ 237 (1065)
+|+++||.||.
T Consensus 252 LPvIfVV~NN~ 262 (433)
T PLN02374 252 LPIVFVVENNL 262 (433)
T ss_pred CCEEEEEeCCC
Confidence 99999999996
No 213
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=98.47 E-value=8.4e-07 Score=94.03 Aligned_cols=62 Identities=19% Similarity=0.257 Sum_probs=55.1
Q ss_pred cccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcc--ccHHHHHHhhhcCCCEEEEEEcCC
Q psy14416 176 TFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFG--FSGMELETLVRYRLPVILVIVNNN 237 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~--m~~~eL~t~vr~~lpivivV~NN~ 237 (1065)
..|++|+++|.|+|++++.+...++++|+|++|||+++ |..++|.+++++++|+++||-||+
T Consensus 73 ~~G~lG~gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~ 136 (195)
T cd02007 73 GTGHSSTSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNE 136 (195)
T ss_pred CCCchhhhHHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCC
Confidence 46899999999999999987767789999999999998 888999999999889888666664
No 214
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=98.35 E-value=1.2e-06 Score=102.85 Aligned_cols=90 Identities=17% Similarity=0.203 Sum_probs=66.2
Q ss_pred EEeccccccCcch--hhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHH
Q psy14416 931 IVNNNGIYGGFDE--TTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMM 1008 (1065)
Q Consensus 931 ~~~gd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1065)
+++|||++ +... .++.++ ..+++|++.||.||+..++ .+.. ......|+.+.|
T Consensus 228 ~~~GDGa~-~eG~f~EaLn~A-----~~~~LPvIfVV~NN~yaig-~~~~------------------~~t~~~dia~~A 282 (433)
T PLN02374 228 AFFGDGTC-NNGQFFECLNMA-----ALWKLPIVFVVENNLWAIG-MSHL------------------RATSDPEIWKKG 282 (433)
T ss_pred EEECCCcc-ccChHHHHHHHH-----HHhCCCEEEEEeCCCEeec-ceee------------------eccCCCCHHHHH
Confidence 99999999 4321 155556 7799999999999962111 1110 001346899999
Q ss_pred HHcCCCeEeeCCHHHH------HHHHHHHHhcCCCCEEEEEEeC
Q psy14416 1009 AVFGHDGYLCTTVPQI------KQAMKKCLQTTTRPSLINILIN 1046 (1065)
Q Consensus 1009 ~~~g~~~~~~~~~~~l------~~~~~~~~~~~~~~~li~~~~~ 1046 (1065)
++||+.+++|+..+.+ ++|++.+.+. ++|+|||+.+-
T Consensus 283 ~a~G~~~~~VDG~D~~av~~a~~~A~~~Ar~g-~gP~LIe~~ty 325 (433)
T PLN02374 283 PAFGMPGVHVDGMDVLKVREVAKEAIERARRG-EGPTLVECETY 325 (433)
T ss_pred HhcCCcEEEECCCCHHHHHHHHHHHHHHHHHc-CCCEEEEEEEE
Confidence 9999999999988866 6788888765 89999999983
No 215
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=98.32 E-value=1.4e-06 Score=107.41 Aligned_cols=133 Identities=11% Similarity=0.091 Sum_probs=94.3
Q ss_pred ceEEEEeccccccccccchhhhhheeccc-cccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccc
Q psy14416 858 PVILVIVNNNGIYGGFDETTYASIVESGE-VTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNG 936 (1065)
Q Consensus 858 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~ 936 (1065)
|-+-...|+.|.+++.+. |++++.... . ++++|+ +++|||
T Consensus 110 ~~~~~~~G~lG~gl~~Av--G~A~a~~~~~~----~~~~v~---------------------------------~i~GDG 150 (580)
T PRK05444 110 EYDTFGAGHSSTSISAAL--GMAKARDLKGG----EDRKVV---------------------------------AVIGDG 150 (580)
T ss_pred CCeeECCChHHHHHHHHH--HHHHHHHhhCC----CCCeEE---------------------------------EEEccc
Confidence 445555666677777666 777766433 2 567889 999999
Q ss_pred ccc-CcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCe
Q psy14416 937 IYG-GFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDG 1015 (1065)
Q Consensus 937 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 1015 (1065)
++. ++...++.++ .++++|+ ++|+|||++ + ....+ +... ......+..+.+++||.++
T Consensus 151 ~l~eG~~~Eal~~A-----~~~~~nl-i~IvdnN~~-~-i~~~~-------~~~~------~~~~~~~~~~~~~a~G~~~ 209 (580)
T PRK05444 151 ALTGGMAFEALNNA-----GDLKSDL-IVILNDNEM-S-ISPNV-------GALS------NYLARLRSSTLFEELGFNY 209 (580)
T ss_pred ccccCHHHHHHHHH-----HhhCCCE-EEEEECCCC-c-CCCcc-------hhhh------hhhccccHHHHHHHcCCCe
Confidence 994 4777888888 8889999 477777773 2 11110 0000 0012255678899999999
Q ss_pred Eee---CCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 1016 YLC---TTVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 1016 ~~~---~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
..+ ++.++|.++++++.+. ++|++|++.|.+....
T Consensus 210 ~~~vdG~d~~~l~~al~~a~~~-~~P~lI~~~T~kg~G~ 247 (580)
T PRK05444 210 IGPIDGHDLDALIETLKNAKDL-KGPVLLHVVTKKGKGY 247 (580)
T ss_pred eeeeCCCCHHHHHHHHHHHHhC-CCCEEEEEEecCCcCC
Confidence 865 8999999999999876 8999999999876653
No 216
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=98.29 E-value=2.4e-06 Score=90.62 Aligned_cols=116 Identities=10% Similarity=0.069 Sum_probs=80.6
Q ss_pred EEeccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccC-
Q psy14416 862 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG- 940 (1065)
Q Consensus 862 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~- 940 (1065)
...+++|.+++.+. +++++..... ++++|+ +++|||.+ +
T Consensus 72 ~~~G~lG~gl~~A~--G~Ala~k~~~----~~~~vv---------------------------------~~~GDG~~-~e 111 (195)
T cd02007 72 FGTGHSSTSISAAL--GMAVARDLKG----KKRKVI---------------------------------AVIGDGAL-TG 111 (195)
T ss_pred ECCCchhhhHHHHH--HHHHHHHHhC----CCCeEE---------------------------------EEEccccc-cc
Confidence 34455566666665 7777764333 467888 99999999 4
Q ss_pred -cchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEe--
Q psy14416 941 -FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYL-- 1017 (1065)
Q Consensus 941 -~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-- 1017 (1065)
+.-.++.++ .++.+|+++||.|| ++ +. .+++. +.+..++++|.+...
T Consensus 112 G~~~Eal~~A-----~~~~~~li~vvdnN-~~-~~------------------~~~~~-----~~~~~~~a~G~~~~~~v 161 (195)
T cd02007 112 GMAFEALNNA-----GYLKSNMIVILNDN-EM-SI------------------SPNVG-----TPGNLFEELGFRYIGPV 161 (195)
T ss_pred ChHHHHHHHH-----HHhCCCEEEEEECC-Cc-cc------------------CCCCC-----CHHHHHHhcCCCccceE
Confidence 444567777 77788998855554 62 10 01111 467788889887653
Q ss_pred -eCCHHHHHHHHHHHHhcCCCCEEEEEEeCCC
Q psy14416 1018 -CTTVPQIKQAMKKCLQTTTRPSLINILINPS 1048 (1065)
Q Consensus 1018 -~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~ 1048 (1065)
..+.+++.++++++.+. ++|++|++.|.+.
T Consensus 162 dG~d~~~l~~a~~~a~~~-~~P~~I~~~T~kg 192 (195)
T cd02007 162 DGHNIEALIKVLKEVKDL-KGPVLLHVVTKKG 192 (195)
T ss_pred CCCCHHHHHHHHHHHHhC-CCCEEEEEEEecc
Confidence 36899999999999875 8999999998653
No 217
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.15 E-value=1.2e-05 Score=89.92 Aligned_cols=108 Identities=16% Similarity=0.172 Sum_probs=77.2
Q ss_pred EEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCC-----CCCCccHH
Q psy14416 931 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTS-----LGPSLRYE 1005 (1065)
Q Consensus 931 ~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 1005 (1065)
++.|||.+.....+.+..+ ++.+.|+++||+||.. |..-... ...-...|..+++.|... ..+..|+.
T Consensus 96 ~~~GDG~~~dIG~~~L~~a-----~~r~~ni~~ivlDNe~-Y~nTGgQ-~S~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~ 168 (299)
T PRK11865 96 AIGGDGGTADIGFQSLSGA-----MERGHNILYLMYDNEA-YMNTGIQ-RSGSTPFGASTTTSPAGKYSRGEDRPKKNMP 168 (299)
T ss_pred EEeCCchHhhccHHHHHHH-----HHcCCCeEEEEECCcc-ccCCCCC-CCCCCCCCcccccCCCCcccCCCCCCCCCHH
Confidence 9999998833345677777 7789999999999954 5522111 001112233344344332 34579999
Q ss_pred HHHHHcCCCeE---eeCCHHHHHHHHHHHHhcCCCCEEEEEEeC
Q psy14416 1006 KMMAVFGHDGY---LCTTVPQIKQAMKKCLQTTTRPSLINILIN 1046 (1065)
Q Consensus 1006 ~~~~~~g~~~~---~~~~~~~l~~~~~~~~~~~~~~~li~~~~~ 1046 (1065)
++|.++|+.|+ .+.+..++.++++++++. ++|++|++..+
T Consensus 169 ~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~~-~Gps~I~v~sP 211 (299)
T PRK11865 169 LIMAAHGIPYVATASIGYPEDFMEKVKKAKEV-EGPAYIQVLQP 211 (299)
T ss_pred HHHHHcCCCEEEEEeCCCHHHHHHHHHHHHhC-CCCEEEEEECC
Confidence 99999999987 467889999999999986 99999999874
No 218
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=98.08 E-value=6.2e-05 Score=93.19 Aligned_cols=62 Identities=23% Similarity=0.343 Sum_probs=51.4
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCee
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNGI 239 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~gy 239 (1065)
-|+.|.+++.|+|.++|.+...++.+++|++|||+++=. -+.+..+..+++|. ++|+||++|
T Consensus 110 ~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~Ea~~~a~~~~l~~-i~ii~~N~~ 173 (617)
T TIGR00204 110 AGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFEALNHAGDLKTDM-IVILNDNEM 173 (617)
T ss_pred CCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHHHHHHHHhcCCCE-EEEEECCCc
Confidence 466788999999999998888899999999999998754 56677788999998 556666666
No 219
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=98.05 E-value=8.1e-05 Score=92.20 Aligned_cols=61 Identities=18% Similarity=0.174 Sum_probs=51.0
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCC
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNN 237 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~ 237 (1065)
-|+.|.+++.|+|.++|..+...+++|++++|||+++=. -+.|-.+..+++|+++||-||+
T Consensus 143 ~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~~~Ealn~a~~~~~~li~iv~~N~ 205 (677)
T PLN02582 143 TGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 205 (677)
T ss_pred cchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccccchhhHHHHHHHHHhhCcCEEEEEECCC
Confidence 578899999999999998887889999999999998754 5566677788999777777775
No 220
>PRK12753 transketolase; Reviewed
Probab=98.05 E-value=7.9e-05 Score=92.87 Aligned_cols=113 Identities=13% Similarity=-0.098 Sum_probs=80.7
Q ss_pred EccCCchHHHHHHHHHHHhCCCeEEEEeccccccccccccccccccCcceEee-cCCCccCCCCCCCCCccChhhhhccc
Q psy14416 309 GMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVI-GGSCAQDHEGIGGFQECPQVELARPY 387 (1065)
Q Consensus 309 ~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~eA~~~~vPLlvI-tg~~p~~~~g~ga~Q~idQ~~l~~~~ 387 (1065)
...-|++++-+|.|+|...|. -.+++|..+=+.=+...|..+-..+.||+++ |.+.-.--.+-..+|.+.+..++|.+
T Consensus 407 ~GIaEq~mv~~aaGlA~~~G~-~P~~~tf~~F~~r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~THq~iedla~lR~i 485 (663)
T PRK12753 407 YGVREFGMTAIANGIAHHGGF-VPYTATFLMFVEYARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQPVEQLASLRLT 485 (663)
T ss_pred eeecHHHHHHHHHHHHHhCCC-eEEEEehHHHHHHHHHHHHHHHhcCCCeEEEEeCCCcccCCCCcccccHHHHHHHhcC
Confidence 566788999999999987665 3345666666667778888888999999998 55544443444578999999999998
Q ss_pred ccEEe-eCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 388 CKYSA-RPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 388 ~k~s~-~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
..... +..+..++ ..+++.|.....||+||-+|..
T Consensus 486 Pn~~v~~PaD~~E~----~~~~~~al~~~~gP~~irl~R~ 521 (663)
T PRK12753 486 PNFSTWRPCDQVEA----AVAWKLAIERHNGPTALILSRQ 521 (663)
T ss_pred CCCEEEccCCHHHH----HHHHHHHHhcCCCCEEEEecCC
Confidence 77543 34444433 4455555544569999999854
No 221
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=98.04 E-value=8.7e-06 Score=78.73 Aligned_cols=147 Identities=16% Similarity=0.112 Sum_probs=107.3
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchh
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 84 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~ 84 (1065)
|++|+.++++.+.|++.|+++...+|.+....++.-+.+. .|..|....|..+...+.|-+.+-+||+.++-.+| ..
T Consensus 1 ~~kvn~seav~e~mkdagIdfa~slPC~~lk~ll~lveedp~i~~i~vtREEeg~GIcAGa~lAGkk~ailmQnsG--lG 78 (172)
T COG4032 1 MYKVNPSEAVYEAMKDAGIDFACSLPCDNLKNLLPLVEEDPEIPEIPVTREEEGVGICAGAYLAGKKPAILMQNSG--LG 78 (172)
T ss_pred CcccCHHHHHHHHHHHcCCcEEEeccHHHHHhHHHHHhcCCCcccccccchhcceeeehhhhhcCCCcEEEEeccC--cc
Confidence 6789999999999999999999999999999999888654 47777777777777777787777778888776766 66
Q ss_pred hhhHHHhhcc-cCCCcEEEEecCCCCCcCccCCCcc---cchhhhcccccceeccCCCcccHHHHHHHHHHHhhc
Q psy14416 85 HTFGGMANAQ-INCWPMLVIGGSCAQDHEGIGGFQE---CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTF 155 (1065)
Q Consensus 85 N~l~gla~A~-~~~~Pll~Isg~~~~~~~g~~~~Q~---~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~ 155 (1065)
|.+++|++-+ ..++|+++|.+.+.....+..+ |. --..++.+.+---.+.+.+|++....+..|+..+..
T Consensus 79 NsiNal~SL~~ty~iPl~ml~ShRG~~~E~i~A-QVpmGr~~~kiLe~~~lpt~t~~~p~Ea~~li~~~~~~a~~ 152 (172)
T COG4032 79 NSINALASLYVTYKIPLLMLASHRGVLKEGIEA-QVPMGRALPKILEGLELPTYTIIGPEEALPLIENAILDAFE 152 (172)
T ss_pred hHHHHHHHHHHHhccchhhhhhccchhhcCCcc-ccccchhhHHHHhhcCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 7777777643 4689999998544332221111 10 011234444444578889999988999999988864
No 222
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=98.01 E-value=7.9e-05 Score=86.64 Aligned_cols=152 Identities=16% Similarity=0.139 Sum_probs=114.7
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh----CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcch
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGL 83 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~----~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~ 83 (1065)
-|+|.++++....+.|++.+.+.|+++..++.+.|.+ .+..++.+-+|.+|..||.|-+. +|.. ++..|||||+
T Consensus 5 ~~~GNeAiA~ga~~ag~~~~a~YPITPsTeI~e~la~~~~~~g~~~vq~E~E~aA~~~a~GAs~-aG~R-a~taTSg~G~ 82 (375)
T PRK09627 5 ISTGNELVAKAAIECGCRFFGGYPITPSSEIAHEMSVLLPKCGGTFIQMEDEISGISVALGASM-SGVK-SMTASSGPGI 82 (375)
T ss_pred EechHHHHHHHHHHhCCCEEEEeCCCChhHHHHHHHHHHHHcCCEEEEcCCHHHHHHHHHHHHh-hCCC-EEeecCCchH
Confidence 4799999999999999999999999999999988753 46889999999999999999665 4533 6677999999
Q ss_pred hhhhHHHhhcccCCCcEEEEecCCCCCcCccCC---Ccccchhhhcc---cccceeccCCCcccHHHHHHHHHHHhhcCC
Q psy14416 84 LHTFGGMANAQINCWPMLVIGGSCAQDHEGIGG---FQECPQVELAR---PYCKYSARPPNIHLIGQHVEKAVRLSTFGK 157 (1065)
Q Consensus 84 ~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~---~Q~~dq~~l~~---~itk~~~~v~~~~~i~~~l~~A~~~A~~~r 157 (1065)
+-+.-.+.-|...++|++++..+++....|... ++++.+ ...+ .+.+-.....+++++-..+.+|++.|-.-+
T Consensus 83 ~lm~E~~~~a~~~e~P~V~~~~~R~GpstG~p~~~~q~D~~~-~~~~~hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~ 161 (375)
T PRK09627 83 SLKAEQIGLGFIAEIPLVIVNVMRGGPSTGLPTRVAQGDVNQ-AKNPTHGDFKSIALAPGSLEEAYTETVRAFNLAERFM 161 (375)
T ss_pred HHHhhHHHHHHhccCCEEEEEeccCCCcCCCCCccchHHHHH-HhcCCCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999886643333221 122211 1111 223345556777778888889999886433
Q ss_pred Cccccc
Q psy14416 158 PGRSLL 163 (1065)
Q Consensus 158 pGP~~l 163 (1065)
-|+.+
T Consensus 162 -~PViv 166 (375)
T PRK09627 162 -TPVFL 166 (375)
T ss_pred -CceEE
Confidence 45444
No 223
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=98.00 E-value=9e-05 Score=86.38 Aligned_cols=154 Identities=16% Similarity=0.152 Sum_probs=118.7
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh----CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcc
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPG 82 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~----~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG 82 (1065)
.-++|.++++....+.||+.+++.|+++..++.+.|.+ .+..++..-+|.+|..||.|-+. +|.. ++..|||||
T Consensus 5 ~~~~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~~~~~~vq~E~E~aA~~~a~GAs~-aG~R-a~TaTSg~G 82 (376)
T PRK08659 5 DFLQGNEACAEGAIAAGCRFFAGYPITPSTEIAEVMARELPKVGGVFIQMEDEIASMAAVIGASW-AGAK-AMTATSGPG 82 (376)
T ss_pred EEeehHHHHHHHHHHhCCCEEEEcCCCChHHHHHHHHHhhhhhCCEEEEeCchHHHHHHHHhHHh-hCCC-eEeecCCCc
Confidence 45799999999999999999999999999999998864 25789999999999999999665 4534 567799999
Q ss_pred hhhhhHHHhhcccCCCcEEEEecCCCCCcCcc---CCCcccchhhh--cccccceeccCCCcccHHHHHHHHHHHhhcCC
Q psy14416 83 LLHTFGGMANAQINCWPMLVIGGSCAQDHEGI---GGFQECPQVEL--ARPYCKYSARPPNIHLIGQHVEKAVRLSTFGK 157 (1065)
Q Consensus 83 ~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~---~~~Q~~dq~~l--~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~r 157 (1065)
+.-+.-++.-|...++|++++..+++....|. ..+++.++... ...+-.-.....++.++-+.+.+|++.|-.-+
T Consensus 83 l~lm~E~~~~a~~~e~P~Viv~~~R~gp~tg~p~~~~q~D~~~~~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~ 162 (376)
T PRK08659 83 FSLMQENIGYAAMTETPCVIVNVQRGGPSTGQPTKPAQGDMMQARWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYR 162 (376)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeecCCCCCCCCCCcCcHHHHHHhcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHC
Confidence 99999999998888999999998887543332 33334332211 01233445666777888888899999987654
Q ss_pred Cccccc
Q psy14416 158 PGRSLL 163 (1065)
Q Consensus 158 pGP~~l 163 (1065)
-|+.+
T Consensus 163 -~PViv 167 (376)
T PRK08659 163 -TPVIV 167 (376)
T ss_pred -CCEEE
Confidence 46655
No 224
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=98.00 E-value=3.8e-05 Score=89.41 Aligned_cols=157 Identities=17% Similarity=0.120 Sum_probs=123.7
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc----CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPG 340 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~----~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG 340 (1065)
.-+++.++++....+.||+.+++.|+++.+++.+.+.+ -+..++..-+|.+|..||.|-+.+-.| ++..|||||
T Consensus 5 ~~~~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~~~~~~vq~E~E~aA~~~a~GAs~aG~R--a~TaTSg~G 82 (376)
T PRK08659 5 DFLQGNEACAEGAIAAGCRFFAGYPITPSTEIAEVMARELPKVGGVFIQMEDEIASMAAVIGASWAGAK--AMTATSGPG 82 (376)
T ss_pred EEeehHHHHHHHHHHhCCCEEEEcCCCChHHHHHHHHHhhhhhCCEEEEeCchHHHHHHHHhHHhhCCC--eEeecCCCc
Confidence 35789999999999999999999999999999888744 256899999999999999988765444 667899999
Q ss_pred ccccccccccccccCcceEeecCCCccCCCCC---CCCCccChhhhhc---ccccEEeeCCChhhHHHHHHHHHHHhhcC
Q psy14416 341 LLHTFGGMANAQINCWPMLVIGGSCAQDHEGI---GGFQECPQVELAR---PYCKYSARPPNIHLIGQHVEKAVRLSTFG 414 (1065)
Q Consensus 341 ~~N~~~av~eA~~~~vPLlvItg~~p~~~~g~---ga~Q~idQ~~l~~---~~~k~s~~l~~~~~i~~~i~~A~~~A~~~ 414 (1065)
++=..-++.-|...++|+|++..+|+-...|. ...++.++. .+. .+-+......+++++-....+|++.|...
T Consensus 83 l~lm~E~~~~a~~~e~P~Viv~~~R~gp~tg~p~~~~q~D~~~~-~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~ 161 (376)
T PRK08659 83 FSLMQENIGYAAMTETPCVIVNVQRGGPSTGQPTKPAQGDMMQA-RWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKY 161 (376)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeecCCCCCCCCCCcCcHHHHHH-hcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998654332 233333322 222 34455677789999999999999999754
Q ss_pred CCCEEEEecCh
Q psy14416 415 KPGVSYLDFPA 425 (1065)
Q Consensus 415 ~~GPV~L~iP~ 425 (1065)
+ -||.+..-.
T Consensus 162 ~-~PViv~~D~ 171 (376)
T PRK08659 162 R-TPVIVLADE 171 (376)
T ss_pred C-CCEEEEech
Confidence 4 488776543
No 225
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=97.97 E-value=0.0033 Score=75.39 Aligned_cols=155 Identities=15% Similarity=0.067 Sum_probs=102.7
Q ss_pred ccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc--C---CceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccc
Q psy14416 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ--E---GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGL 341 (1065)
Q Consensus 267 ~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~--~---~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~ 341 (1065)
+-+-+++++.+-+.||..+-|.||++++.+.+.|.+ + ++.+=-..||-.|.-+|.|- ...|.-+++..- .+|+
T Consensus 16 llGneAi~r~Ale~gV~~~aGYpGtPstei~e~la~~~~~l~~vy~e~s~NEkvA~e~a~GA-~~~G~ral~~mK-hVGl 93 (640)
T COG4231 16 LLGNEAIARGALEAGVGVAAGYPGTPSTELIETLAKAKKILGDVYFEWSLNEKVALETAAGA-SYAGVRALVTMK-HVGL 93 (640)
T ss_pred hccHHHHHHHHHhcCceEEeccCCCCcHHHHHHHHHhhhhcCcEEEEecccHHHHHHHHHHh-hhcCceeeEEec-cccc
Confidence 456789999999999999999999999999998854 2 46666789999999888884 444543443331 3332
Q ss_pred ccccccccccccc--CcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEE
Q psy14416 342 LHTFGGMANAQIN--CWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVS 419 (1065)
Q Consensus 342 ~N~~~av~eA~~~--~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV 419 (1065)
==+.=.+..+.+. +=-||+|+||-|..+--+.. | |-..+++...-+..+..++..+.+.+..||..+.... -||
T Consensus 94 NvAsDpl~s~ay~Gv~GGlviv~aDDpg~~SSqne-q--dsr~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~-~pV 169 (640)
T COG4231 94 NVASDPLMSLAYAGVTGGLVIVVADDPGMHSSQNE-Q--DSRAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSG-LPV 169 (640)
T ss_pred ccchhhhhhhhhcCccccEEEEEccCCCcccccch-h--HhHHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhC-CCE
Confidence 2112222222222 33689999998876533222 1 1122333334477888899999999999999886433 467
Q ss_pred EEecChhh
Q psy14416 420 YLDFPANL 427 (1065)
Q Consensus 420 ~L~iP~Dv 427 (1065)
-|-.=.++
T Consensus 170 ilr~ttr~ 177 (640)
T COG4231 170 ILRTTTRV 177 (640)
T ss_pred EEEEEeee
Confidence 66554443
No 226
>PTZ00089 transketolase; Provisional
Probab=97.93 E-value=0.00012 Score=91.48 Aligned_cols=116 Identities=16% Similarity=0.029 Sum_probs=81.5
Q ss_pred eEE-EccCCchHHHHHHHHHHHhCCCeEEEEeccccccccccccccccccCcceEeec-CCCccCCCCCCCCCccChhhh
Q psy14416 306 HYI-GMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIG-GSCAQDHEGIGGFQECPQVEL 383 (1065)
Q Consensus 306 ~~i-~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~eA~~~~vPLlvIt-g~~p~~~~g~ga~Q~idQ~~l 383 (1065)
|++ ...-|++++-+|.|+|...|. -.+++|..+=+.=++..+..+-..+.|++++. .+.-.--.+-..+|.+.+..+
T Consensus 404 rfi~~GIaEq~mv~~AaGlA~~~G~-~P~~~tf~~Fl~Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq~iedia~ 482 (661)
T PTZ00089 404 RYIRFGVREHAMCAIMNGIAAHGGF-IPFGATFLNFYGYALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQPVETLAL 482 (661)
T ss_pred CeeeeeecHHHHHHHHHHHHHcCCC-eEEEEehHHHHHHHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCcccHHHHHH
Confidence 544 667899999999999996663 33345666666677788899999999999984 444333333456899999999
Q ss_pred hcccccEEe-eCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 384 ARPYCKYSA-RPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 384 ~~~~~k~s~-~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
+|.+..-.. +..++.++.. +++.|.....||++|-+|..
T Consensus 483 lR~iPn~~V~~PaD~~E~~~----~l~~al~~~~gP~~irl~R~ 522 (661)
T PTZ00089 483 LRATPNLLVIRPADGTETSG----AYALALANAKTPTILCLSRQ 522 (661)
T ss_pred HhcCCCcEEEecCCHHHHHH----HHHHHHHcCCCCEEEEecCC
Confidence 999876543 4445554444 44545434569999999965
No 227
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=97.93 E-value=4.9e-05 Score=85.05 Aligned_cols=108 Identities=13% Similarity=0.074 Sum_probs=76.5
Q ss_pred EEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHH
Q psy14416 931 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAV 1010 (1065)
Q Consensus 931 ~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1065)
.+.|||.+..-....+..+ ...++|+++||+||.. |...... ...-...|..+++.+.....+..|..++|.+
T Consensus 97 a~~GDG~~~~~g~~~l~~A-----~~~~~~v~~vv~dN~~-~~~TGgQ-~S~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a 169 (300)
T PRK11864 97 GWAGDGGTADIGFQALSGA-----AERNHDILYIMYDNEA-YMNTGIQ-RSSSTPYGAWTTTTPGGKREHKKPVPDIMAA 169 (300)
T ss_pred EEEccCccccccHHHHHHH-----HHhCcCEEEEEECCee-eecCCCC-CCCCCcCCCccccCCCCCcCCCCCHHHHHHH
Confidence 7999999843333455555 7789999999999954 4422111 1111222444555555555678999999999
Q ss_pred cCCCeEe---eCCHHHHHHHHHHHHhcCCCCEEEEEEeC
Q psy14416 1011 FGHDGYL---CTTVPQIKQAMKKCLQTTTRPSLINILIN 1046 (1065)
Q Consensus 1011 ~g~~~~~---~~~~~~l~~~~~~~~~~~~~~~li~~~~~ 1046 (1065)
+|+.|+. ..++.++.++++++++. ++|++|++..+
T Consensus 170 ~g~~yVA~~~~~~~~~~~~~i~~A~~~-~Gps~I~~~sp 207 (300)
T PRK11864 170 HKVPYVATASIAYPEDFIRKLKKAKEI-RGFKFIHLLAP 207 (300)
T ss_pred cCCCEEEEEeCCCHHHHHHHHHHHHhC-CCCEEEEEeCC
Confidence 9999874 45678999999999986 99999999874
No 228
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=97.91 E-value=0.00019 Score=88.33 Aligned_cols=243 Identities=14% Similarity=0.028 Sum_probs=133.1
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCee-------eeccccch
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNGI-------YGGFDEAT 247 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~gy-------~~g~~~~~ 247 (1065)
-|+.|+++++|+|.++|.++...+.+|++++|||+++=. -+.+..+..++-++++ |+|+++. ..|.....
T Consensus 176 tGslg~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~nliv-IlddN~~~~~~~~q~~g~~~~v 254 (641)
T PLN02234 176 TGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSNMIV-ILNDNKQVSLPTANLDGPTQPV 254 (641)
T ss_pred CCchHHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHHHhhhCCCEEE-EEECCCCCcccccccCCCCCCc
Confidence 588999999999999998888889999999999998754 4455566655645555 5554433 11111100
Q ss_pred h------------------hhhhhhhccCCCcccccCccHHHHHHHHHHhc-------------------CceEEEeec-
Q psy14416 248 Y------------------AWLDIIKKSNMSEDYDEELSANQVIAQALKFQ-------------------GIEYVFGIV- 289 (1065)
Q Consensus 248 ~------------------~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~-------------------GV~~vfg~p- 289 (1065)
. ........+|.......+-..-+.|.++|++. |+...=..+
T Consensus 255 ~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~vDGHd~~~l~~al~~~k~~~~~~P~vI~~~T~KGkGv~~~E~~~~ 334 (641)
T PLN02234 255 GALSCALSRLQSNCGMIRETSSTLFEELGFHYVGPVDGHNIDDLVSILETLKSTKTIGPVLIHVVTEKGRGYPYAERADD 334 (641)
T ss_pred ccHHHHHHHhhcccccccCCHHHHHHHcCCEEEeeECCCCHHHHHHHHHHHHhcCCCCCEEEEEEEecCCCcchhhcCCc
Confidence 0 11233444554332122344556677666532 111000000
Q ss_pred ------------CCc----------hhhhHHHh----hc-CCceEE-----------------------EccCCchHHHH
Q psy14416 290 ------------GIP----------VIELAMAC----QQ-EGIHYI-----------------------GMRNEQAACYA 319 (1065)
Q Consensus 290 ------------G~~----------~~~l~~al----~~-~~i~~i-----------------------~~~~E~~A~~~ 319 (1065)
|.. ...+.++| ++ +.+-.+ .-.-|++++-+
T Consensus 335 ~~H~~~~~~~~~g~~~~~~~~~~sy~~af~~aL~e~a~~D~~Iv~l~adm~ggt~~~~f~~~fPdR~fdvGIAEq~~Vg~ 414 (641)
T PLN02234 335 KYHGVLKFDPETGKQFKNISKTQSYTSCFVEALIAEAEADKDIVAIHAAMGGGTMLNLFESRFPTRCFDVGIAEQHAVTF 414 (641)
T ss_pred ccCCCCCCCccccccccCCCCCCCHHHHHHHHHHHHHHHCcCEEEEECCCCCCcchHHHHHHccccccCCCcCHHHHHHH
Confidence 000 01122222 11 122222 23468888888
Q ss_pred HHHHHHHhCCCeEEEEecccccccccccc-ccccccCcceEeecCCCccCCC-CCCCCCccChhhhhcccccEEe-eCCC
Q psy14416 320 AQAIGYLTKKPGVCLVVSGPGLLHTFGGM-ANAQINCWPMLVIGGSCAQDHE-GIGGFQECPQVELARPYCKYSA-RPPN 396 (1065)
Q Consensus 320 A~g~ar~tgkpgv~~~tsGpG~~N~~~av-~eA~~~~vPLlvItg~~p~~~~-g~ga~Q~idQ~~l~~~~~k~s~-~l~~ 396 (1065)
|.|+|...-+|.+++ ..+=+.-++--| .++...+.|++++. +++--.- +-..+|.+.+..+++.+..... ...+
T Consensus 415 AaGLA~~G~rPvv~~--fs~Fl~RA~DQI~~dva~~~lpV~~v~-~~aG~~g~dG~TH~~~~Dia~lr~iPnl~V~~Psd 491 (641)
T PLN02234 415 AAGLACEGLKPFCTI--YSSFMQRAYDQVVHDVDLQKLPVRFAI-DRAGLMGADGPTHCGAFDVTFMACLPNMIVMAPSD 491 (641)
T ss_pred HHHHHHCCCeEEEEe--hHHHHHHHHHHHHHHHhhcCCCEEEEE-eCCccCCCCCccccccHHHHHHhcCCCCEEEeeCC
Confidence 999988544554443 332222222222 23356889988775 2222111 1234677777888888877654 3456
Q ss_pred hhhHHHHHHHHHHHhhcCCCCEEEEecChhh
Q psy14416 397 IHLIGQHVEKAVRLSTFGKPGVSYLDFPANL 427 (1065)
Q Consensus 397 ~~~i~~~i~~A~~~A~~~~~GPV~L~iP~Dv 427 (1065)
+.++...++.|+ ....+|++|-.|...
T Consensus 492 ~~E~~~~l~~a~----~~~~~Pv~ir~~R~~ 518 (641)
T PLN02234 492 EAELFNMVATAA----AIDDRPSCFRYHRGN 518 (641)
T ss_pred HHHHHHHHHHHH----hCCCCCEEEEeeccc
Confidence 666655555443 334589999999653
No 229
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=97.89 E-value=0.00017 Score=88.85 Aligned_cols=241 Identities=16% Similarity=0.101 Sum_probs=137.6
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccc--cHHHHHHhhhcCCCEEEEEEcCCeeee-------------
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGF--SGMELETLVRYRLPVILVIVNNNGIYG------------- 241 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m--~~~eL~t~vr~~lpivivV~NN~gy~~------------- 241 (1065)
.|..|.+++.|+|.++|.+....+++++|++|||+++= .-+.|..+..+++|+++|+-||+ |..
T Consensus 112 ~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~A~~~k~~li~Ii~dN~-~si~~~~~~~~~~l~~ 190 (581)
T PRK12315 112 VGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAELKSNLIIIVNDNQ-MSIAENHGGLYKNLKE 190 (581)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHHHHhhCCCEEEEEECCC-CcCCCCCchhhhhhhh
Confidence 35556689999999999877778899999999999875 46778888999998887777775 410
Q ss_pred ----------------cc--cc--chhhhhhhh------hc--------------cCCC--------------cc-----
Q psy14416 242 ----------------GF--DE--ATYAWLDII------KK--------------SNMS--------------ED----- 262 (1065)
Q Consensus 242 ----------------g~--~~--~~~~~~~l~------~~--------------~g~~--------------~~----- 262 (1065)
|+ .. +--|...+. .. .+.+ .+
T Consensus 191 ~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~~~~gP~~i~~~T~kG~G~~~~~~~~~~~h~~~~f~~~~~~ 270 (581)
T PRK12315 191 LRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEVKDIDHPIVLHIHTLKGKGYQPAEENKEAFHWHMPFDLETGQ 270 (581)
T ss_pred hhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHHhCCCCEEEEEEeecCCCCChhhcCHHhcCCCCCCCcccCc
Confidence 00 00 000000000 00 0000 00
Q ss_pred ---cccCccHHHHHHHHHHhcCce--EEEee-cCC-chhhhHHHhh-cCCceEE-EccCCchHHHHHHHHHHHhCCCeEE
Q psy14416 263 ---YDEELSANQVIAQALKFQGIE--YVFGI-VGI-PVIELAMACQ-QEGIHYI-GMRNEQAACYAAQAIGYLTKKPGVC 333 (1065)
Q Consensus 263 ---~~~~~~~~~~l~~~L~~~GV~--~vfg~-pG~-~~~~l~~al~-~~~i~~i-~~~~E~~A~~~A~g~ar~tgkpgv~ 333 (1065)
.....+..+.+.++|.+..-+ .++.+ +.. ....+ ..+. +.+=|++ .-.-|+++.-+|.|+|..--+|.+
T Consensus 271 ~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~~~~~-~~f~~~fP~R~id~GIaEq~~v~~AaGlA~~G~~Pvv- 348 (581)
T PRK12315 271 SKVPASGESYSSVTLDYLLKKIKEGKPVVAINAAIPGVFGL-KEFRKKYPDQYVDVGIAEQESVAFASGIAANGARPVI- 348 (581)
T ss_pred ccCCCCCcCHHHHHHHHHHHHhccCCCEEEEeCccccccCc-HHHHHhccccccCCCchHHHHHHHHHHHHHCcCeEEE-
Confidence 000123345555555544322 23333 111 01111 2232 2223544 557899999999999984444443
Q ss_pred EEecccccccccccc-ccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEe-eCCChhhHHHHHHHHHHHh
Q psy14416 334 LVVSGPGLLHTFGGM-ANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSA-RPPNIHLIGQHVEKAVRLS 411 (1065)
Q Consensus 334 ~~tsGpG~~N~~~av-~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~-~l~~~~~i~~~i~~A~~~A 411 (1065)
++..+=+.-++--| .++-..+.||+++........ +-..+|.+.+..+++.+..... ...++.++...++.|++
T Consensus 349 -~~fs~Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~~-dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~-- 424 (581)
T PRK12315 349 -FVNSTFLQRAYDQLSHDLAINNNPAVMIVFGGSISG-NDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEWALT-- 424 (581)
T ss_pred -EeeHHHHHHHHHHHHHHHHhcCCCEEEEEECCcccC-CCccccccHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHh--
Confidence 33333221222211 224567899999865333332 3345788888999999988765 45566666666655543
Q ss_pred hcCCCCEEEEecChh
Q psy14416 412 TFGKPGVSYLDFPAN 426 (1065)
Q Consensus 412 ~~~~~GPV~L~iP~D 426 (1065)
...|||+|-+|..
T Consensus 425 --~~~gP~~ir~~r~ 437 (581)
T PRK12315 425 --QHEHPVAIRVPEH 437 (581)
T ss_pred --CCCCcEEEEEcCC
Confidence 3369999999855
No 230
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=97.82 E-value=0.00031 Score=87.68 Aligned_cols=116 Identities=15% Similarity=-0.063 Sum_probs=79.3
Q ss_pred eEE-EccCCchHHHHHHHHHHHhCCCeEEEEeccccccccccccccccccCcceEeecC-CCccCCCCCCCCCccChhhh
Q psy14416 306 HYI-GMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGG-SCAQDHEGIGGFQECPQVEL 383 (1065)
Q Consensus 306 ~~i-~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~eA~~~~vPLlvItg-~~p~~~~g~ga~Q~idQ~~l 383 (1065)
|++ ...-|++++-+|.|+|+..|...++ +|..+=+.-+..++..+-..+.|++++.. +.-.--.+-..+|.+.+..+
T Consensus 397 rfi~~GIaEq~mv~~AaGlA~~gG~~p~~-~tf~~F~~r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~THq~iedia~ 475 (653)
T TIGR00232 397 NYIHYGVREFAMGAIMNGIALHGGFKPYG-GTFLMFVDYARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTHQPIEQLAS 475 (653)
T ss_pred CeEeecccHHHHHHHHHHHHHcCCCeEEE-EEhHHHHHHHHHHHHHHHhcCCCEEEEEeCCccCCCCCCcccCCHHHHHH
Confidence 444 4678999999999999977764444 55555444556677778888999998863 33332223346799999999
Q ss_pred hcccccEE-eeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 384 ARPYCKYS-ARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 384 ~~~~~k~s-~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
++.+.... ++..++.++...++.|+ ....||++|-+|..
T Consensus 476 lr~iPn~~v~~PaD~~E~~~~~~~a~----~~~~gP~~irl~r~ 515 (653)
T TIGR00232 476 LRAIPNLSVWRPCDGNETAAAWKYAL----ESQDGPTALILSRQ 515 (653)
T ss_pred HhcCCCCEEEeeCCHHHHHHHHHHHH----hcCCCcEEEEEcCC
Confidence 99876653 44556555555555554 33469999999854
No 231
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=97.82 E-value=0.00016 Score=84.08 Aligned_cols=155 Identities=17% Similarity=0.145 Sum_probs=122.3
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc----CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGL 341 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~----~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~ 341 (1065)
-+++.++++....+.|++.+.+.|+++.+++.+.+.+ -+.+++..-||.+|..||.|-+.+-.| ++..|||||+
T Consensus 5 ~~~GNeAiA~ga~~ag~~~~a~YPITPsTeI~e~la~~~~~~g~~~vq~E~E~aA~~~a~GAs~aG~R--a~taTSg~G~ 82 (375)
T PRK09627 5 ISTGNELVAKAAIECGCRFFGGYPITPSSEIAHEMSVLLPKCGGTFIQMEDEISGISVALGASMSGVK--SMTASSGPGI 82 (375)
T ss_pred EechHHHHHHHHHHhCCCEEEEeCCCChhHHHHHHHHHHHHcCCEEEEcCCHHHHHHHHHHHHhhCCC--EEeecCCchH
Confidence 4689999999999999999999999999999887743 468899999999999999998876554 6678999999
Q ss_pred cccccccccccccCcceEeecCCCccCCCCCCCCCccChhhh-------hcccccEEeeCCChhhHHHHHHHHHHHhhcC
Q psy14416 342 LHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVEL-------ARPYCKYSARPPNIHLIGQHVEKAVRLSTFG 414 (1065)
Q Consensus 342 ~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l-------~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~ 414 (1065)
+=..-++.-|...++|++++..+|+-...|... .++|.++ .+.+-+-.....+++++-....+||+.|..-
T Consensus 83 ~lm~E~~~~a~~~e~P~V~~~~~R~GpstG~p~--~~~q~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~ 160 (375)
T PRK09627 83 SLKAEQIGLGFIAEIPLVIVNVMRGGPSTGLPT--RVAQGDVNQAKNPTHGDFKSIALAPGSLEEAYTETVRAFNLAERF 160 (375)
T ss_pred HHHhhHHHHHHhccCCEEEEEeccCCCcCCCCC--ccchHHHHHHhcCCCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998744333211 1222222 2244445667788899999999999999743
Q ss_pred CCCEEEEecCh
Q psy14416 415 KPGVSYLDFPA 425 (1065)
Q Consensus 415 ~~GPV~L~iP~ 425 (1065)
.-||.+..-.
T Consensus 161 -~~PViv~~D~ 170 (375)
T PRK09627 161 -MTPVFLLLDE 170 (375)
T ss_pred -cCceEEecch
Confidence 4678777654
No 232
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=97.77 E-value=0.00011 Score=82.55 Aligned_cols=107 Identities=15% Similarity=0.259 Sum_probs=80.0
Q ss_pred EEeccc-cccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCC-CCccHHHHH
Q psy14416 931 IVNNNG-IYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLG-PSLRYEKMM 1008 (1065)
Q Consensus 931 ~~~gd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 1008 (1065)
++.||| .| ....+.+... .+.+.+|++|++||. +|+.-... ...-...|..+++.|..... +..|-..||
T Consensus 93 v~gGDG~~~-dIG~~~l~h~-----~~Rn~dit~iv~DNe-vYgnTggQ-~S~tTp~G~~t~t~p~Gk~~~~k~d~~~la 164 (294)
T COG1013 93 VIGGDGDAY-DIGGNHLIHA-----LRRNHDITYIVVDNE-VYGNTGGQ-ASPTTPKGAKTKTTPYGKRSEKKKDPGLLA 164 (294)
T ss_pred EEecchhHh-hhhhHHHHHH-----HHcCCCeEEEEECCe-ecccCCCc-cCCCCCCCceeeecCCCCCcCCCCCHHHHH
Confidence 999999 66 7777888888 889999999999995 46632221 11222334445545544433 566899999
Q ss_pred HHcCCCeE---eeCCHHHHHHHHHHHHhcCCCCEEEEEEeC
Q psy14416 1009 AVFGHDGY---LCTTVPQIKQAMKKCLQTTTRPSLINILIN 1046 (1065)
Q Consensus 1009 ~~~g~~~~---~~~~~~~l~~~~~~~~~~~~~~~li~~~~~ 1046 (1065)
.++|+.|+ .+....++...++++++. .+|++|+|..+
T Consensus 165 ~a~G~~yVAr~~~~~~~~l~~~i~kA~~~-~Gps~I~v~sP 204 (294)
T COG1013 165 MAAGATYVARASVGDPKDLTEKIKKAAEH-KGPSFIDVLSP 204 (294)
T ss_pred HHCCCCeEEEecccCHHHHHHHHHHHHhc-cCCeEEEEecC
Confidence 99999987 466788999999999988 89999999874
No 233
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=97.75 E-value=0.00038 Score=80.49 Aligned_cols=150 Identities=19% Similarity=0.157 Sum_probs=116.1
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh----CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcch
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGL 83 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~----~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~ 83 (1065)
-++|.++++....+.|++.+.+.|+++..++.+.|.+ .+..++..-+|.+|..||.|-+. +|.. ++.+|||||.
T Consensus 6 ~~~GNeAiA~ga~~ag~~~~a~YPiTPsTeI~e~la~~~~~~~~~~vq~E~E~aA~~~a~GAs~-aG~R-a~taTSg~Gl 83 (352)
T PRK07119 6 LMKGNEAIAEAAIRAGCRCYFGYPITPQSEIPEYMSRRLPEVGGVFVQAESEVAAINMVYGAAA-TGKR-VMTSSSSPGI 83 (352)
T ss_pred eehHHHHHHHHHHHhCCCEEEEeCCCCchHHHHHHHHHHHHhCCEEEeeCcHHHHHHHHHHHHh-hCCC-EEeecCcchH
Confidence 4799999999999999999999999999999988854 35789999999999999999665 4544 5566899999
Q ss_pred hhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhc---c-----cccceeccCCCcccHHHHHHHHHHHhhc
Q psy14416 84 LHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELA---R-----PYCKYSARPPNIHLIGQHVEKAVRLSTF 155 (1065)
Q Consensus 84 ~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~---~-----~itk~~~~v~~~~~i~~~l~~A~~~A~~ 155 (1065)
+-+..++.-|...++|++++-.+++..-.+ ..| .||.++. + ..-.-.....+++++-+....|++.|-.
T Consensus 84 ~lm~E~l~~a~~~e~P~v~v~v~R~~p~~g--~t~-~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~ 160 (352)
T PRK07119 84 SLKQEGISYLAGAELPCVIVNIMRGGPGLG--NIQ-PSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADK 160 (352)
T ss_pred HHHHHHHHHHHHccCCEEEEEeccCCCCCC--CCc-chhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888776633322 222 2344432 1 1223355667788888889999999875
Q ss_pred CCCccccc
Q psy14416 156 GKPGRSLL 163 (1065)
Q Consensus 156 ~rpGP~~l 163 (1065)
.+ -|+.+
T Consensus 161 ~~-~PViv 167 (352)
T PRK07119 161 YR-NPVMV 167 (352)
T ss_pred hC-CCEEE
Confidence 44 46665
No 234
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=97.73 E-value=0.00028 Score=86.67 Aligned_cols=154 Identities=14% Similarity=0.114 Sum_probs=115.6
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh----CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcc
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPG 82 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~----~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG 82 (1065)
..|+|.++++....+.|++.+++.|+++...+.+.|.+ .++.++..-+|.+|..||.|-+. +|.. ++..|+|||
T Consensus 194 ~~l~GNeAvA~ga~~ag~~~~~~YPiTPsTei~e~la~~~~~~~~~~~q~E~E~aA~~~a~GAs~-aG~R-a~taTSg~G 271 (562)
T TIGR03710 194 ILISGNEAIALGAIAAGLRFYAAYPITPASDILEFLAKHLKKFGVVVVQAEDEIAAINMAIGASY-AGAR-AMTATSGPG 271 (562)
T ss_pred EEeehHHHHHHHHHHhCCceecccCCCChhHHHHHHHHhhhhhCcEEEeeccHHHHHHHHHhHHh-cCCc-eeecCCCCC
Confidence 45899999999999999999999999999999998864 36999999999999999999555 5544 556799999
Q ss_pred hhhhhHHHhhcccCCCcEEEEecCCCCCcCcc---CCCcccchhhhcc--cccceeccCCCcccHHHHHHHHHHHhhcCC
Q psy14416 83 LLHTFGGMANAQINCWPMLVIGGSCAQDHEGI---GGFQECPQVELAR--PYCKYSARPPNIHLIGQHVEKAVRLSTFGK 157 (1065)
Q Consensus 83 ~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~---~~~Q~~dq~~l~~--~itk~~~~v~~~~~i~~~l~~A~~~A~~~r 157 (1065)
+.=+.-+|.-|...++|++++..+++....|. ..++++.+..... .+-.-.....++.++-+.+.+|++.|-.-+
T Consensus 272 l~lm~E~l~~a~~~~~P~Vi~~~~R~gpstg~~t~~eq~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~ 351 (562)
T TIGR03710 272 FALMTEALGLAGMTETPLVIVDVQRGGPSTGLPTKTEQSDLLFALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQ 351 (562)
T ss_pred hhHhHHHHhHHHhccCCEEEEEcccCCCCCCCCCCccHHHHHHHhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999887544332 2222222211110 111234455667777888888888886432
Q ss_pred Cccccc
Q psy14416 158 PGRSLL 163 (1065)
Q Consensus 158 pGP~~l 163 (1065)
-|+.+
T Consensus 352 -~PViv 356 (562)
T TIGR03710 352 -TPVIV 356 (562)
T ss_pred -CCEEE
Confidence 45443
No 235
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=97.73 E-value=0.00045 Score=80.72 Aligned_cols=151 Identities=14% Similarity=0.050 Sum_probs=112.1
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh------CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCC
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ------EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSG 80 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~------~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~G 80 (1065)
.-++|.++++......|++.+++.|+++..++.+.|.+ .++.++..-+|.+|..||.|-+.. |.. ++..|||
T Consensus 4 ~~l~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~G~~~~~~~~~E~E~aA~~~aiGAs~a-GaR-a~TaTSg 81 (390)
T PRK08366 4 KVVSGNYAAAYAALHARVQVVAAYPITPQTSIIEKIAEFIANGEADIQYVPVESEHSAMAACIGASAA-GAR-AFTATSA 81 (390)
T ss_pred EEeeHHHHHHHHHHHhCCCEEEEECCCChhHHHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHhh-CCC-eEeeeCc
Confidence 35799999999999999999999999999999988853 258888899999999999996664 533 5567999
Q ss_pred cchhhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhc-ccccc-eeccCCCcccHHHHHHHHHHHhhcCCC
Q psy14416 81 PGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELA-RPYCK-YSARPPNIHLIGQHVEKAVRLSTFGKP 158 (1065)
Q Consensus 81 PG~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~-~~itk-~~~~v~~~~~i~~~l~~A~~~A~~~rp 158 (1065)
||+.=+.-+|..|...+.|+++.-.+++... +.... .||.+++ .--+. ...-..+++++-....+|++.|-.-+
T Consensus 82 ~Gl~lm~E~l~~aa~~~lPiVi~~~~R~~p~-~~~~~--~~q~D~~~~~d~g~i~~~~~~~QEa~d~t~~Af~lAE~~~- 157 (390)
T PRK08366 82 QGLALMHEMLHWAAGARLPIVMVDVNRAMAP-PWSVW--DDQTDSLAQRDTGWMQFYAENNQEVYDGVLMAFKVAETVN- 157 (390)
T ss_pred ccHHHHhhHHHHHHhcCCCEEEEEeccCCCC-CCCCc--chhhHHHHHhhcCEEEEeCCCHHHHHHHHHHHHHHHHHHC-
Confidence 9999999999999999999998887766542 22221 1222221 11122 23334677788888889999886432
Q ss_pred ccccc
Q psy14416 159 GRSLL 163 (1065)
Q Consensus 159 GP~~l 163 (1065)
-|+.+
T Consensus 158 ~PViv 162 (390)
T PRK08366 158 LPAMV 162 (390)
T ss_pred CCEEE
Confidence 44444
No 236
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=97.72 E-value=0.00014 Score=89.35 Aligned_cols=158 Identities=15% Similarity=0.095 Sum_probs=122.9
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc----CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPG 340 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~----~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG 340 (1065)
..+++.++++....+.|++.+.+.|+++.+++.+.+.+ .++.++..-||.+|..||.|-+.+-.| ++..|||||
T Consensus 194 ~~l~GNeAvA~ga~~ag~~~~~~YPiTPsTei~e~la~~~~~~~~~~~q~E~E~aA~~~a~GAs~aG~R--a~taTSg~G 271 (562)
T TIGR03710 194 ILISGNEAIALGAIAAGLRFYAAYPITPASDILEFLAKHLKKFGVVVVQAEDEIAAINMAIGASYAGAR--AMTATSGPG 271 (562)
T ss_pred EEeehHHHHHHHHHHhCCceecccCCCChhHHHHHHHHhhhhhCcEEEeeccHHHHHHHHHhHHhcCCc--eeecCCCCC
Confidence 35789999999999999999999999999999888744 369999999999999999998765444 566899999
Q ss_pred ccccccccccccccCcceEeecCCCccCCCCC---CCCCccChhhhhc---ccccEEeeCCChhhHHHHHHHHHHHhhcC
Q psy14416 341 LLHTFGGMANAQINCWPMLVIGGSCAQDHEGI---GGFQECPQVELAR---PYCKYSARPPNIHLIGQHVEKAVRLSTFG 414 (1065)
Q Consensus 341 ~~N~~~av~eA~~~~vPLlvItg~~p~~~~g~---ga~Q~idQ~~l~~---~~~k~s~~l~~~~~i~~~i~~A~~~A~~~ 414 (1065)
+.=+.-++.-|...++|+|++.++|+-...+. ...+++.+. .+. .+-.-.....++.++-....+|++.|..
T Consensus 272 l~lm~E~l~~a~~~~~P~Vi~~~~R~gpstg~~t~~eq~D~~~~-~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~- 349 (562)
T TIGR03710 272 FALMTEALGLAGMTETPLVIVDVQRGGPSTGLPTKTEQSDLLFA-LYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEK- 349 (562)
T ss_pred hhHhHHHHhHHHhccCCEEEEEcccCCCCCCCCCCccHHHHHHH-hcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHH-
Confidence 99999999999999999999999998554331 222222221 222 2223456677888999999999999974
Q ss_pred CCCEEEEecChh
Q psy14416 415 KPGVSYLDFPAN 426 (1065)
Q Consensus 415 ~~GPV~L~iP~D 426 (1065)
-.-||.+..-..
T Consensus 350 ~~~PViv~~D~~ 361 (562)
T TIGR03710 350 YQTPVIVLSDQY 361 (562)
T ss_pred hcCCEEEEechH
Confidence 346787766543
No 237
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=97.72 E-value=0.014 Score=76.15 Aligned_cols=154 Identities=19% Similarity=0.168 Sum_probs=107.7
Q ss_pred cCccHHHHHHHHHHh-------cCc---eEEEeecCCchhhhHHHhhc-------CCceEEEccCCchHHHHHHHHHHHh
Q psy14416 265 EELSANQVIAQALKF-------QGI---EYVFGIVGIPVIELAMACQQ-------EGIHYIGMRNEQAACYAAQAIGYLT 327 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~-------~GV---~~vfg~pG~~~~~l~~al~~-------~~i~~i~~~~E~~A~~~A~g~ar~t 327 (1065)
.-+++-++|++.+.+ .|+ ..+-|.||+++..+.+.|.+ ++|.+--..||..|+-+|.|-++..
T Consensus 18 ~~l~GneAivr~~l~q~~~d~~aG~~ta~~vsgYpGsP~~~i~~~l~~~~~~l~~~~i~~e~~~NEkvA~e~a~Gaq~~~ 97 (1159)
T PRK13030 18 IFLTGTQALVRLLLMQRRRDRARGLNTAGFVSGYRGSPLGGVDQALWKAKKLLDASDIRFLPGINEELAATAVLGTQQVE 97 (1159)
T ss_pred EeeeHHHHHHHHHHHhhhHHHhcCCCccceEEEeCCCCHHHHHHHHHHhhhhhcccceEEeecCCHHHHHHHHHHhcccc
Confidence 457899999999999 999 99999999999999888733 3588999999999999998877433
Q ss_pred CCC-----eE--EEEeccccccccccccccccccCc----ceEeecCCCccCCCCCCCCCccChhhhhccccc-EEeeCC
Q psy14416 328 KKP-----GV--CLVVSGPGLLHTFGGMANAQINCW----PMLVIGGSCAQDHEGIGGFQECPQVELARPYCK-YSARPP 395 (1065)
Q Consensus 328 gkp-----gv--~~~tsGpG~~N~~~av~eA~~~~v----PLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k-~s~~l~ 395 (1065)
-.+ || +..-=|||+==+.=++..+-+.++ -||+++||-|..+-- |.-.|.+.+....+ -..+..
T Consensus 98 ~~~~~~~~Gv~~l~~~K~~GvnvaaD~l~~~n~~G~~~~GG~v~v~gDDpg~~SS----q~eqdSr~~~~~a~iPvl~Ps 173 (1159)
T PRK13030 98 ADPERTVDGVFAMWYGKGPGVDRAGDALKHGNAYGSSPHGGVLVVAGDDHGCVSS----SMPHQSDFALIAWHMPVLNPA 173 (1159)
T ss_pred ccCCccccceEEEEecCcCCcccchhHHHHHHhhcCCCCCcEEEEEecCCCCccC----cCHHHHHHHHHHcCCceeCCC
Confidence 222 22 222347776555555555555555 799999998765432 33223333333322 356778
Q ss_pred ChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 396 NIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 396 ~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
++.++.+....||..+.... -||-+-.
T Consensus 174 ~~qE~~d~~~~a~~lSr~~~-~pV~lr~ 200 (1159)
T PRK13030 174 NVQEYLDFGLYGWALSRYSG-AWVGFKA 200 (1159)
T ss_pred CHHHHHHHHHHHHHHHHHhC-CCEEEEE
Confidence 88999999999999886432 3454443
No 238
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=97.71 E-value=0.00029 Score=81.48 Aligned_cols=154 Identities=18% Similarity=0.121 Sum_probs=122.3
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc----CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGL 341 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~----~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~ 341 (1065)
-+++.++++....+.|++.+.+.|+++.+++.+.+.+ .+..++..-||.+|..||.|-+.+-.| ++..|||||+
T Consensus 6 ~~~GNeAiA~ga~~ag~~~~a~YPiTPsTeI~e~la~~~~~~~~~~vq~E~E~aA~~~a~GAs~aG~R--a~taTSg~Gl 83 (352)
T PRK07119 6 LMKGNEAIAEAAIRAGCRCYFGYPITPQSEIPEYMSRRLPEVGGVFVQAESEVAAINMVYGAAATGKR--VMTSSSSPGI 83 (352)
T ss_pred eehHHHHHHHHHHHhCCCEEEEeCCCCchHHHHHHHHHHHHhCCEEEeeCcHHHHHHHHHHHHhhCCC--EEeecCcchH
Confidence 4689999999999999999999999999999888743 357899999999999999998875544 5667899999
Q ss_pred cccccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhc--------ccccEEeeCCChhhHHHHHHHHHHHhhc
Q psy14416 342 LHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR--------PYCKYSARPPNIHLIGQHVEKAVRLSTF 413 (1065)
Q Consensus 342 ~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~--------~~~k~s~~l~~~~~i~~~i~~A~~~A~~ 413 (1065)
+=...++.-|...++|++++-.+|+.... +..| .||.+++- .+-.-.....+++++-.....|++.|..
T Consensus 84 ~lm~E~l~~a~~~e~P~v~v~v~R~~p~~--g~t~-~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~ 160 (352)
T PRK07119 84 SLKQEGISYLAGAELPCVIVNIMRGGPGL--GNIQ-PSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADK 160 (352)
T ss_pred HHHHHHHHHHHHccCCEEEEEeccCCCCC--CCCc-chhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888874332 2222 35554431 2223456778999999999999999975
Q ss_pred CCCCEEEEecCh
Q psy14416 414 GKPGVSYLDFPA 425 (1065)
Q Consensus 414 ~~~GPV~L~iP~ 425 (1065)
.+ -||.+..-.
T Consensus 161 ~~-~PViv~~D~ 171 (352)
T PRK07119 161 YR-NPVMVLGDG 171 (352)
T ss_pred hC-CCEEEEcch
Confidence 43 588776543
No 239
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=97.69 E-value=0.00058 Score=79.99 Aligned_cols=145 Identities=14% Similarity=0.050 Sum_probs=109.9
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh------CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCC
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ------EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSG 80 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~------~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~G 80 (1065)
.-++|.++++....+.|++.+++.|+++..++.+.+.+ .+.+++.+-+|.+|..||.|-+. +|.. ++..|+|
T Consensus 5 ~~~~GNeAvA~aa~~Ag~~v~a~YPITPsTei~e~la~~~~~g~~~~~~v~~EsE~aA~~~~~GAs~-aGaR-a~TaTS~ 82 (394)
T PRK08367 5 TVMKANEAAAWAAKLAKPKVIAAFPITPSTLVPEKISEFVANGELDAEFIKVESEHSAISACVGASA-AGVR-TFTATAS 82 (394)
T ss_pred EeccHHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhcCCcCeEEEEeCCHHHHHHHHHHHHh-hCCC-eEeeecc
Confidence 34899999999999999999999999999999988854 24789999999999999999655 4533 5677999
Q ss_pred cchhhhhHHHhhcccCCCcEEEEecCCCCCcCccC---CCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCC
Q psy14416 81 PGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIG---GFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGK 157 (1065)
Q Consensus 81 PG~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~---~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~r 157 (1065)
||+.=+.-.|.-|...++|+++..+++.... ..+ .++++- ..+..-.......++.++-+..-.|++.|-..+
T Consensus 83 ~Gl~lm~E~l~~aag~~lP~V~vv~~R~~~~-p~~i~~d~~D~~---~~rd~g~~~~~a~~~QEa~D~~~~Af~lAE~~~ 158 (394)
T PRK08367 83 QGLALMHEVLFIAAGMRLPIVMAIGNRALSA-PINIWNDWQDTI---SQRDTGWMQFYAENNQEALDLILIAFKVAEDER 158 (394)
T ss_pred chHHHHhhHHHHHHHccCCEEEEECCCCCCC-CCCcCcchHHHH---hccccCeEEEeCCCHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999987766543 211 223321 111111222233677778888888999887433
No 240
>PLN02790 transketolase
Probab=97.63 E-value=0.00012 Score=91.22 Aligned_cols=97 Identities=19% Similarity=0.267 Sum_probs=66.9
Q ss_pred EEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHH
Q psy14416 931 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAV 1010 (1065)
Q Consensus 931 ~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1065)
+++|||.+ ...+.++.+ +-...++||-.|+|+|||++ + +. +.+. ....-+..+..++
T Consensus 142 ~~~GDG~l--~eG~~~EAl--~~A~~~~L~nli~i~d~N~~-~-i~----------~~~~-------~~~~~~~~~~f~a 198 (654)
T PLN02790 142 CILGDGCQ--MEGISNEAA--SLAGHWGLGKLIVLYDDNHI-S-ID----------GDTE-------IAFTEDVDKRYEA 198 (654)
T ss_pred EEECcCcc--cchHHHHHH--HHHHHhCCCCEEEEEecCCc-c-cc----------CCcc-------cccchhHHHHHHH
Confidence 99999999 444433322 11256799877777788883 1 00 1100 1112356788999
Q ss_pred cCCCeEee----CCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q psy14416 1011 FGHDGYLC----TTVPQIKQAMKKCLQTTTRPSLINILINPSAD 1050 (1065)
Q Consensus 1011 ~g~~~~~~----~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 1050 (1065)
||.+++.| ++.++|.+|++++.+..++|++|++.|-....
T Consensus 199 ~G~~~~~vdgg~hd~~~l~~a~~~a~~~~~~P~lI~~~T~kG~G 242 (654)
T PLN02790 199 LGWHTIWVKNGNTDYDEIRAAIKEAKAVTDKPTLIKVTTTIGYG 242 (654)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHhcCCCeEEEEEEEeecCC
Confidence 99999999 67999999999988634899999999965443
No 241
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=97.62 E-value=0.035 Score=72.41 Aligned_cols=154 Identities=18% Similarity=0.080 Sum_probs=104.2
Q ss_pred cCccHHHHHHHHHHh-------cCc---eEEEeecCCchhhhHHHhhc-------CCceEEEccCCchHHHHHHHHHH--
Q psy14416 265 EELSANQVIAQALKF-------QGI---EYVFGIVGIPVIELAMACQQ-------EGIHYIGMRNEQAACYAAQAIGY-- 325 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~-------~GV---~~vfg~pG~~~~~l~~al~~-------~~i~~i~~~~E~~A~~~A~g~ar-- 325 (1065)
.-+++-++|++.+.+ .|+ ..+-|.||+++..+.+.|.+ ++|.+--..||-.|+-++.|--+
T Consensus 26 ~~l~G~qAivR~~l~q~~~D~~aG~~ta~~vsGYpGsP~~~id~~l~~~~~~l~~~~i~fe~~~NEkvAae~~~GsQ~~~ 105 (1165)
T PRK09193 26 VFLTGTQALVRLPLLQRERDRAAGLNTAGFVSGYRGSPLGGLDQELWRAKKHLAAHDIVFQPGLNEDLAATAVWGSQQVN 105 (1165)
T ss_pred eeeeHHHHHHHHHHHHhhHHHhcCCCccceEEeeCCCCHHHHHHHHHHhhhhhcccceEEeeccCHHHHHHHHhhhcccc
Confidence 357899999999888 999 99999999999999888732 45999999999999988855422
Q ss_pred ------HhCCCeEEEEeccccccccccccccccccCc----ceEeecCCCccCCCCCCCCCccChhhhhccccc-EEeeC
Q psy14416 326 ------LTKKPGVCLVVSGPGLLHTFGGMANAQINCW----PMLVIGGSCAQDHEGIGGFQECPQVELARPYCK-YSARP 394 (1065)
Q Consensus 326 ------~tgkpgv~~~tsGpG~~N~~~av~eA~~~~v----PLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k-~s~~l 394 (1065)
..|.-++ ..-=|||+==+.=++..|-+.++ -||+++||-|..+-- |.-.|.+.+....+ -..+.
T Consensus 106 ~~~~a~~~Gv~~l-~y~K~pGvn~aaD~l~~~n~~G~~~~GGvv~v~gDDpg~~SS----q~eqdSr~~~~~a~iPvl~P 180 (1165)
T PRK09193 106 LFPGAKYDGVFGM-WYGKGPGVDRSGDVFRHANAAGTSPHGGVLALAGDDHAAKSS----TLPHQSEHAFKAAGMPVLFP 180 (1165)
T ss_pred cccceeeccceEE-EecCcCCccccHhHHHHHHhhcCCCCCcEEEEEecCCCCccc----cchhhhHHHHHHcCCceeCC
Confidence 2333222 23347776544445554444444 799999998765433 32223333332222 35567
Q ss_pred CChhhHHHHHHHHHHHhhcCCCCEEEEecC
Q psy14416 395 PNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424 (1065)
Q Consensus 395 ~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP 424 (1065)
.++.++.+....||..+.... -||-+-+=
T Consensus 181 s~~qE~~d~~~~g~~lSr~~g-~pV~lr~~ 209 (1165)
T PRK09193 181 ANVQEILDYGLHGWAMSRYSG-LWVGMKTV 209 (1165)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCEEEEEE
Confidence 788889999999999886432 45555443
No 242
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=97.60 E-value=0.00024 Score=79.65 Aligned_cols=63 Identities=11% Similarity=0.096 Sum_probs=54.4
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCc-cccHHHHHHhhhcCCCEEEEEEcCCee
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAF-GFSGMELETLVRYRLPVILVIVNNNGI 239 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf-~m~~~eL~t~vr~~lpivivV~NN~gy 239 (1065)
.+.||.+.+.|.|.+.+.....++++||++.|||++ ....+.|..+++.+.++++||+||+.|
T Consensus 68 ~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~~~L~~a~~r~~ni~~ivlDNe~Y 131 (299)
T PRK11865 68 HVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIGFQSLSGAMERGHNILYLMYDNEAY 131 (299)
T ss_pred hhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhccHHHHHHHHHcCCCeEEEEECCccc
Confidence 467888899999998886554567899999999986 444899999999999999999999988
No 243
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=97.59 E-value=0.00013 Score=89.77 Aligned_cols=107 Identities=10% Similarity=0.110 Sum_probs=66.8
Q ss_pred EEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHH
Q psy14416 931 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAV 1010 (1065)
Q Consensus 931 ~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1065)
+++|||++ ...+.+..+.. ....++|+++|+-|| + |..-... +............+..+..+.+++
T Consensus 140 ~~iGDG~~--~eG~~~EAln~--A~~~k~~li~Ii~dN-~-~si~~~~--------~~~~~~l~~~~~~~~~~~~~~~~a 205 (581)
T PRK12315 140 AVIGDGSL--SGGLALEGLNN--AAELKSNLIIIVNDN-Q-MSIAENH--------GGLYKNLKELRDTNGQSENNLFKA 205 (581)
T ss_pred EEECchhh--hcchHHHHHHH--HHhhCCCEEEEEECC-C-CcCCCCC--------chhhhhhhhhhhcccccHHHHHHh
Confidence 99999999 44443333311 144568988777666 4 2211000 000000000011123466788999
Q ss_pred cCCCeEee---CCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 1011 FGHDGYLC---TTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 1011 ~g~~~~~~---~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
||.+++.| .+.+++.++++++.+. ++|++|++.|-+....+
T Consensus 206 ~G~~~~~v~DG~D~~~l~~a~~~a~~~-~gP~~i~~~T~kG~G~~ 249 (581)
T PRK12315 206 MGLDYRYVEDGNDIESLIEAFKEVKDI-DHPIVLHIHTLKGKGYQ 249 (581)
T ss_pred cCCeEEEeeCCCCHHHHHHHHHHHHhC-CCCEEEEEEeecCCCCC
Confidence 99999998 4789999999998764 89999999998776643
No 244
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=97.59 E-value=0.0007 Score=79.85 Aligned_cols=152 Identities=15% Similarity=0.033 Sum_probs=112.4
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC------CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCC
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE------GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSG 80 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~------~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~G 80 (1065)
.-|+|.++++....+.|++.+++.|+++..++.+.+.+. +..++..-+|.+|..||.|-+. +|.. ++..|+|
T Consensus 11 ~~~~GNeAiA~ga~~Ag~~~~a~YPITPsTeI~e~la~~~~~g~~~~~~vq~E~E~~A~~~~~GAs~-aGaR-a~TaTS~ 88 (407)
T PRK09622 11 EVWDGNTAASNALRQAQIDVVAAYPITPSTPIVQNYGSFKANGYVDGEFVMVESEHAAMSACVGAAA-AGGR-VATATSS 88 (407)
T ss_pred eecchHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhCCCcCcEEEeeccHHHHHHHHHHHHh-hCcC-EEeecCc
Confidence 358999999999999999999999999999999888532 3678999999999999999554 5644 5567999
Q ss_pred cchhhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhc--ccccceeccCCCcccHHHHHHHHHHHhhcCC-
Q psy14416 81 PGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELA--RPYCKYSARPPNIHLIGQHVEKAVRLSTFGK- 157 (1065)
Q Consensus 81 PG~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~--~~itk~~~~v~~~~~i~~~l~~A~~~A~~~r- 157 (1065)
||+.=+.-+|.-|...++|++++..++.... ... -..||.++. +.-..-.....++.++-+.+.+|++.|-..+
T Consensus 89 ~Gl~lm~E~l~~aa~~~~P~V~~~~~R~~~~-~~~--i~~d~~D~~~~r~~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~ 165 (407)
T PRK09622 89 QGLALMVEVLYQASGMRLPIVLNLVNRALAA-PLN--VNGDHSDMYLSRDSGWISLCTCNPQEAYDFTLMAFKIAEDQKV 165 (407)
T ss_pred chHHHHhhHHHHHHHhhCCEEEEEeccccCC-CcC--CCchHHHHHHHhcCCeEEEeCCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999888876665432 111 111332222 2111234555677778888888999885431
Q ss_pred Cccccc
Q psy14416 158 PGRSLL 163 (1065)
Q Consensus 158 pGP~~l 163 (1065)
.-|+.+
T Consensus 166 ~~Pviv 171 (407)
T PRK09622 166 RLPVIV 171 (407)
T ss_pred CCCEEE
Confidence 355554
No 245
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=97.58 E-value=0.00015 Score=90.29 Aligned_cols=137 Identities=15% Similarity=0.172 Sum_probs=83.4
Q ss_pred eccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEecccccc-Ccc
Q psy14416 864 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG-GFD 942 (1065)
Q Consensus 864 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~-~~~ 942 (1065)
.+++|+++|+|+ ++++.. +++.|+ +|+|||+|. ++.
T Consensus 122 ~gslg~a~G~A~--a~~~~~--------~~~~v~---------------------------------~v~GDG~~~eG~~ 158 (641)
T PRK12571 122 STSISAALGFAK--ARALGQ--------PDGDVV---------------------------------AVIGDGSLTAGMA 158 (641)
T ss_pred cChHHHHHHHHH--HHHHhC--------CCCeEE---------------------------------EEEeCchhhcchH
Confidence 345577777777 777765 778899 999999993 333
Q ss_pred hhhHHHhhccCccccCCCEEEEEEcCCcccCCCchh---hH-hHHhhcCCc-------ccCCCCCCCCCCcc--------
Q psy14416 943 ETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEA---TY-ASIVESGEV-------TTVSPPTSLGPSLR-------- 1003 (1065)
Q Consensus 943 ~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~---~~-~~~~~~~~~-------~~~~~~~~~~~~~~-------- 1003 (1065)
..++.++ .++++|+++ |+|||++.-.-+.. .+ ..+.....+ +... ...+..+.
T Consensus 159 ~Eal~~a-----~~~~~~li~-I~dnN~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 230 (641)
T PRK12571 159 YEALNNA-----GAADRRLIV-ILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVE--ERLPGPLRDGARRARE 230 (641)
T ss_pred HHHHHHH-----HHhCCCEEE-EEECCCeeecCCccHHHHHHHHHhcCcchHHHHHHHHHHH--hhcchhHHHHHHHHHH
Confidence 4566666 778899866 66776732111110 00 011001000 0000 00001111
Q ss_pred -------HHHHHHHcCCCeE-eeC--CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 1004 -------YEKMMAVFGHDGY-LCT--TVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 1004 -------~~~~~~~~g~~~~-~~~--~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
....-++||.++. .|. +.++|.++|+++.+..++|++|.+.|......
T Consensus 231 ~~~~~~~~~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~~~~P~~I~~~T~kGkG~ 288 (641)
T PRK12571 231 LVTGMIGGGTLFEELGFTYVGPIDGHDMEALLSVLRAARARADGPVLVHVVTEKGRGY 288 (641)
T ss_pred hhhhccchhhHHHHcCCEEECccCCCCHHHHHHHHHHHHhCCCCCEEEEEEecCccCc
Confidence 1356688999998 465 89999999998876348999999999776654
No 246
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=97.57 E-value=0.00041 Score=75.43 Aligned_cols=146 Identities=17% Similarity=0.058 Sum_probs=100.3
Q ss_pred HHHhcCceEEEeecCCchhhhHHHhhc----CCc--eEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccccccccc
Q psy14416 276 ALKFQGIEYVFGIVGIPVIELAMACQQ----EGI--HYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMA 349 (1065)
Q Consensus 276 ~L~~~GV~~vfg~pG~~~~~l~~al~~----~~i--~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~ 349 (1065)
..++.|++.+++.|+++.+++.+.+.+ .+. +++..-+|.+|..|+.|-+. +|+ .++..|||||+.=...++.
T Consensus 2 ga~~ag~~~~~~YPiTPstei~e~~~~~~~~~~~~~~~~~~E~E~~A~~~~~GAs~-aG~-ra~t~ts~~Gl~lm~e~l~ 79 (230)
T PF01855_consen 2 GAIEAGCDFAAAYPITPSTEIMEYLAKYIADGGGDAKVVQAESEHAAMEAAIGASA-AGA-RAMTATSGPGLNLMAEPLY 79 (230)
T ss_dssp HHHHHT-SEEEE--BTTTCHHHHHHHHHHHCCTBB-EEEE-SSHHHHHHHHHHHHH-TT---EEEEEECCHHHHHCCCHH
T ss_pred HHHhcCCceEEEeCCCCccHHHHHHHHHHHHcCCceEEEEecchHHHHHHHHHHHh-cCC-ceEEeecCCcccccHhHHH
Confidence 456789999999999999998887632 345 99999999999999988776 444 3456899999999999999
Q ss_pred cccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecC
Q psy14416 350 NAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424 (1065)
Q Consensus 350 eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP 424 (1065)
-|...++|+++...+|+....|....++=+-.-..+..-.-.....++.++......|++.|..- .-||.+..-
T Consensus 80 ~a~~~~~P~V~~~~~R~g~~~g~~~~~~q~D~~~~~d~~~~vl~p~~~QEa~d~~~~A~~lAe~~-~~PViv~~D 153 (230)
T PF01855_consen 80 WAAGTELPIVIVVVQRAGPSPGLSTQPEQDDLMAARDSGWIVLAPSSPQEAYDMTLIAFNLAEKY-QTPVIVLFD 153 (230)
T ss_dssp HHHHTT--EEEEEEEB---SSSB--SB-SHHHHHTTTSS-EEEE--SHHHHHHHHHHHHHHHHHH-TSEEEEEEE
T ss_pred HHHHcCCCEEEEEEECCCCCCCCcCcCChhHHHHHHhcCeEEEeCCCHHHHHHHHHHHHHHHHHH-CCCEEEEec
Confidence 99999999999999988765543332221112223344444566788899999999999999753 468887764
No 247
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=97.55 E-value=0.0034 Score=75.27 Aligned_cols=101 Identities=19% Similarity=0.168 Sum_probs=76.6
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-----CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcc
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-----GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPG 82 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-----~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG 82 (1065)
.+.+-+++++.+-+.||..+-|.||+....|.+.|.+. ++.+=...||..|.-+|.| |...|.-+++..- .||
T Consensus 15 ~llGneAi~r~Ale~gV~~~aGYpGtPstei~e~la~~~~~l~~vy~e~s~NEkvA~e~a~G-A~~~G~ral~~mK-hVG 92 (640)
T COG4231 15 LLLGNEAIARGALEAGVGVAAGYPGTPSTELIETLAKAKKILGDVYFEWSLNEKVALETAAG-ASYAGVRALVTMK-HVG 92 (640)
T ss_pred HhccHHHHHHHHHhcCceEEeccCCCCcHHHHHHHHHhhhhcCcEEEEecccHHHHHHHHHH-hhhcCceeeEEec-ccc
Confidence 35778999999999999999999999999999999643 3777888999999999999 7778888887773 666
Q ss_pred h---hhhhHHHhhcccCCCcEEEEecCCCCCc
Q psy14416 83 L---LHTFGGMANAQINCWPMLVIGGSCAQDH 111 (1065)
Q Consensus 83 ~---~N~l~gla~A~~~~~Pll~Isg~~~~~~ 111 (1065)
. ++.+-.++.+=. .=-+|+|+|+-|.-.
T Consensus 93 lNvAsDpl~s~ay~Gv-~GGlviv~aDDpg~~ 123 (640)
T COG4231 93 LNVASDPLMSLAYAGV-TGGLVIVVADDPGMH 123 (640)
T ss_pred cccchhhhhhhhhcCc-cccEEEEEccCCCcc
Confidence 3 333333333222 335788888766543
No 248
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=97.50 E-value=0.00081 Score=77.85 Aligned_cols=80 Identities=23% Similarity=0.265 Sum_probs=60.8
Q ss_pred CCCcccccccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEE
Q psy14416 156 GKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVI 233 (1065)
Q Consensus 156 ~rpGP~~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV 233 (1065)
||-|+.|+... ...++ +..+.+|.++|.|+|++++.+....++.++|+.|||+..-. -..|..+..+++|+++||
T Consensus 119 GrggsmH~~~~-~~~~~--~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lPvvfvv 195 (362)
T PLN02269 119 GKGGSMHFYKK-DANFY--GGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVC 195 (362)
T ss_pred CCCCcccccch-hcCcc--ccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHhhccCcCEEEEE
Confidence 67777777331 12232 23578999999999999998888888999999999995433 455667788999988888
Q ss_pred EcCCee
Q psy14416 234 VNNNGI 239 (1065)
Q Consensus 234 ~NN~gy 239 (1065)
-||+ |
T Consensus 196 eNN~-~ 200 (362)
T PLN02269 196 ENNH-Y 200 (362)
T ss_pred eCCC-E
Confidence 8886 6
No 249
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=97.48 E-value=0.00058 Score=74.26 Aligned_cols=143 Identities=17% Similarity=0.075 Sum_probs=96.7
Q ss_pred HHHhCCCcEEEEeCCCChHHHHHHHHh----CCC--eEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhHHHh
Q psy14416 18 ALKFQGIEYVFGIVGIPVIELAMACQQ----EGI--HYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMA 91 (1065)
Q Consensus 18 ~L~~~GV~~vFgvpG~~~~~l~~al~~----~~i--~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~gla 91 (1065)
...+.|++.+++.|++....+.+.+.+ .++ +++..-+|.+|..||.|-+. +|+... ..|+|||+.-+.-+|.
T Consensus 2 ga~~ag~~~~~~YPiTPstei~e~~~~~~~~~~~~~~~~~~E~E~~A~~~~~GAs~-aG~ra~-t~ts~~Gl~lm~e~l~ 79 (230)
T PF01855_consen 2 GAIEAGCDFAAAYPITPSTEIMEYLAKYIADGGGDAKVVQAESEHAAMEAAIGASA-AGARAM-TATSGPGLNLMAEPLY 79 (230)
T ss_dssp HHHHHT-SEEEE--BTTTCHHHHHHHHHHHCCTBB-EEEE-SSHHHHHHHHHHHHH-TT--EE-EEEECCHHHHHCCCHH
T ss_pred HHHhcCCceEEEeCCCCccHHHHHHHHHHHHcCCceEEEEecchHHHHHHHHHHHh-cCCceE-EeecCCcccccHhHHH
Confidence 356789999999999999998888743 344 99999999999999999555 675555 5699999999999999
Q ss_pred hcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCccccc
Q psy14416 92 NAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLL 163 (1065)
Q Consensus 92 ~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP~~l 163 (1065)
.|...++|++++..++.....|....++-+..-..+..-.-.....++.++.+....|++.|-.-+ -|+.+
T Consensus 80 ~a~~~~~P~V~~~~~R~g~~~g~~~~~~q~D~~~~~d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~-~PViv 150 (230)
T PF01855_consen 80 WAAGTELPIVIVVVQRAGPSPGLSTQPEQDDLMAARDSGWIVLAPSSPQEAYDMTLIAFNLAEKYQ-TPVIV 150 (230)
T ss_dssp HHHHTT--EEEEEEEB---SSSB--SB-SHHHHHTTTSS-EEEE--SHHHHHHHHHHHHHHHHHHT-SEEEE
T ss_pred HHHHcCCCEEEEEEECCCCCCCCcCcCChhHHHHHHhcCeEEEeCCCHHHHHHHHHHHHHHHHHHC-CCEEE
Confidence 999999999999988776665544444444333444334445566777888888889999887643 45443
No 250
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=97.47 E-value=0.00066 Score=79.36 Aligned_cols=152 Identities=14% Similarity=0.028 Sum_probs=117.5
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc------CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ------EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGP 339 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~------~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGp 339 (1065)
-+++.++++...+..|++.+.+.|+++.+++.+.+.+ -++.++..-+|.+|.-||.|-+.+-.| ++..||||
T Consensus 5 ~l~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~G~~~~~~~~~E~E~aA~~~aiGAs~aGaR--a~TaTSg~ 82 (390)
T PRK08366 5 VVSGNYAAAYAALHARVQVVAAYPITPQTSIIEKIAEFIANGEADIQYVPVESEHSAMAACIGASAAGAR--AFTATSAQ 82 (390)
T ss_pred EeeHHHHHHHHHHHhCCCEEEEECCCChhHHHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHhhCCC--eEeeeCcc
Confidence 4689999999999999999999999999999887743 258888888999999999998876554 56689999
Q ss_pred cccccccccccccccCcceEeecCCCccCCCCCCCCCccChhhh-hcccccEE-eeCCChhhHHHHHHHHHHHhhcCCCC
Q psy14416 340 GLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVEL-ARPYCKYS-ARPPNIHLIGQHVEKAVRLSTFGKPG 417 (1065)
Q Consensus 340 G~~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l-~~~~~k~s-~~l~~~~~i~~~i~~A~~~A~~~~~G 417 (1065)
|+.=+.-++.-|...++|+|+.-.+|+... +. . -..||.++ +...+.|. .-..+++++.....+|++.|..- .-
T Consensus 83 Gl~lm~E~l~~aa~~~lPiVi~~~~R~~p~-~~-~-~~~~q~D~~~~~d~g~i~~~~~~~QEa~d~t~~Af~lAE~~-~~ 158 (390)
T PRK08366 83 GLALMHEMLHWAAGARLPIVMVDVNRAMAP-PW-S-VWDDQTDSLAQRDTGWMQFYAENNQEVYDGVLMAFKVAETV-NL 158 (390)
T ss_pred cHHHHhhHHHHHHhcCCCEEEEEeccCCCC-CC-C-CcchhhHHHHHhhcCEEEEeCCCHHHHHHHHHHHHHHHHHH-CC
Confidence 999999999999999999999988887652 11 1 11244442 22333442 23468888999999999999743 35
Q ss_pred EEEEec
Q psy14416 418 VSYLDF 423 (1065)
Q Consensus 418 PV~L~i 423 (1065)
||.+..
T Consensus 159 PViv~~ 164 (390)
T PRK08366 159 PAMVVE 164 (390)
T ss_pred CEEEEe
Confidence 776665
No 251
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=97.45 E-value=0.00039 Score=67.59 Aligned_cols=160 Identities=14% Similarity=0.106 Sum_probs=112.8
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEE-EccCCchHHHHHHHHHHHhCCCeEEEEecccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYI-GMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 342 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i-~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~ 342 (1065)
.+++.++++.++|++.||++.+.+|=+....++.-++++ .|..| .+|.|.+-+ .+.|.+.+.+||..++-.|| +.
T Consensus 2 ~kvn~seav~e~mkdagIdfa~slPC~~lk~ll~lveedp~i~~i~vtREEeg~G-IcAGa~lAGkk~ailmQnsG--lG 78 (172)
T COG4032 2 YKVNPSEAVYEAMKDAGIDFACSLPCDNLKNLLPLVEEDPEIPEIPVTREEEGVG-ICAGAYLAGKKPAILMQNSG--LG 78 (172)
T ss_pred cccCHHHHHHHHHHHcCCcEEEeccHHHHHhHHHHHhcCCCcccccccchhccee-eehhhhhcCCCcEEEEeccC--cc
Confidence 467899999999999999999999999888888777654 56666 455555555 45577778888988887766 56
Q ss_pred ccccccccccc-cCcceEeecCCCccCCCCCCCCCcc--ChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEE
Q psy14416 343 HTFGGMANAQI-NCWPMLVIGGSCAQDHEGIGGFQEC--PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVS 419 (1065)
Q Consensus 343 N~~~av~eA~~-~~vPLlvItg~~p~~~~g~ga~Q~i--dQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV 419 (1065)
|.+++++.-+. -++|++.|...|.....+..+.--+ -..++++..---.+.+..|++....+..|+..+.... .||
T Consensus 79 NsiNal~SL~~ty~iPl~ml~ShRG~~~E~i~AQVpmGr~~~kiLe~~~lpt~t~~~p~Ea~~li~~~~~~a~~~s-~pv 157 (172)
T COG4032 79 NSINALASLYVTYKIPLLMLASHRGVLKEGIEAQVPMGRALPKILEGLELPTYTIIGPEEALPLIENAILDAFENS-RPV 157 (172)
T ss_pred hHHHHHHHHHHHhccchhhhhhccchhhcCCccccccchhhHHHHhhcCCcccccCCHHHHHHHHHHHHHHHHHcC-Cce
Confidence 77777766544 3799999998887766554431111 0123333333346778899999999999999887432 456
Q ss_pred EEecChhhh
Q psy14416 420 YLDFPANLL 428 (1065)
Q Consensus 420 ~L~iP~Dv~ 428 (1065)
-+-+-...+
T Consensus 158 ~vlls~~~W 166 (172)
T COG4032 158 AVLLSPKYW 166 (172)
T ss_pred EEEechHHh
Confidence 666554443
No 252
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=97.41 E-value=0.00069 Score=76.00 Aligned_cols=118 Identities=8% Similarity=-0.020 Sum_probs=74.3
Q ss_pred ccCCCcchhHHHHHHhhhcccC-CCCeEEEEeCCCCc-cccHHHHHHhhhcCCCEEEEEEcCCeeeeccccchhhhhhhh
Q psy14416 177 FGTMGVGLGFALAAALYCNHYA-PGKRVVCVQGDSAF-GFSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDII 254 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~-p~rrvV~l~GDGsf-~m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~~~~l~ 254 (1065)
..+||.+.+.|.|++.+..... ++..|+++.|||++ ....+.|..++..++|+++||.||..| ++.- .|.-.
T Consensus 68 ~~~~G~~~~~A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~~~l~~A~~~~~~v~~vv~dN~~~--~~TG----gQ~S~ 141 (300)
T PRK11864 68 HTAFAATAAVASGIEEALKARGEKGVIVVGWAGDGGTADIGFQALSGAAERNHDILYIMYDNEAY--MNTG----IQRSS 141 (300)
T ss_pred eehhhChHHHHHHHHHHHHhhCCCCcEEEEEEccCccccccHHHHHHHHHhCcCEEEEEECCeee--ecCC----CCCCC
Confidence 4678999999999999854332 44667779999996 556899999999999999999999977 3311 11111
Q ss_pred -hccCCCccc--ccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHh
Q psy14416 255 -KKSNMSEDY--DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMAC 300 (1065)
Q Consensus 255 -~~~g~~~~~--~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al 300 (1065)
.+.+...+. .-+....--+.+.++.+|+.+|.-+.-.....+..++
T Consensus 142 ~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i 190 (300)
T PRK11864 142 STPYGAWTTTTPGGKREHKKPVPDIMAAHKVPYVATASIAYPEDFIRKL 190 (300)
T ss_pred CCcCCCccccCCCCCcCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHH
Confidence 111100000 0000011235566667899998776544445555444
No 253
>PTZ00089 transketolase; Provisional
Probab=97.40 E-value=0.00035 Score=87.30 Aligned_cols=94 Identities=17% Similarity=0.273 Sum_probs=65.7
Q ss_pred EEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHH
Q psy14416 931 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAV 1010 (1065)
Q Consensus 931 ~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1065)
+++|||.+ .-.+.++.+ +-...++||-.|+|+|||++ + ++ +.+ .....-+..+..++
T Consensus 153 ~v~GDG~l--~eG~~~EAl--~~A~~~~L~nLi~i~d~N~~-~-i~----------~~~-------~~~~~~~~~~~f~a 209 (661)
T PTZ00089 153 VICGDGCL--QEGVSQEAL--SLAGHLGLEKLIVLYDDNKI-T-ID----------GNT-------DLSFTEDVEKKYEA 209 (661)
T ss_pred EEECccch--hhHHHHHHH--HHHHHhCCCCEEEEEECCCc-c-cc----------cCc-------ccccCccHHHHHHh
Confidence 99999999 444433322 11255788877777888883 1 11 111 11123467889999
Q ss_pred cCCCeEee---C-CHHHHHHHHHHHHhcCCCCEEEEEEeCC
Q psy14416 1011 FGHDGYLC---T-TVPQIKQAMKKCLQTTTRPSLINILINP 1047 (1065)
Q Consensus 1011 ~g~~~~~~---~-~~~~l~~~~~~~~~~~~~~~li~~~~~~ 1047 (1065)
||.++..| + +.++|.+|++++.+..++|++|++.|-+
T Consensus 210 ~G~~~i~v~dG~~D~~~l~~a~~~a~~~~~~P~~I~~~T~k 250 (661)
T PTZ00089 210 YGWHVIEVDNGNTDFDGLRKAIEEAKKSKGKPKLIIVKTTI 250 (661)
T ss_pred cCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEEeee
Confidence 99999999 3 8999999999987654799999999964
No 254
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=97.36 E-value=0.00047 Score=86.04 Aligned_cols=97 Identities=18% Similarity=0.261 Sum_probs=65.5
Q ss_pred EEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHH
Q psy14416 931 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAV 1010 (1065)
Q Consensus 931 ~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1065)
+++|||.. .-...++.+ +-...++||-.|+|++||++ + ++ +.. .....-+..+..++
T Consensus 147 ~~~GDG~l--~EG~~~EA~--~~A~~~~L~nLi~ivd~N~~-~-i~----------~~~-------~~~~~~~~~~~~~a 203 (653)
T TIGR00232 147 VFVGDGCL--QEGISYEVA--SLAGHLKLGKLIVLYDSNRI-S-ID----------GAV-------DGSFTEDVAKRFEA 203 (653)
T ss_pred EEEccccc--cccHHHHHH--HHHHHhCCCcEEEEEeCCCe-e-ec----------ccc-------ccccCccHHHHHHh
Confidence 99999998 222222111 11256899977777888773 1 01 111 11113478899999
Q ss_pred cCCCeEee---CCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q psy14416 1011 FGHDGYLC---TTVPQIKQAMKKCLQTTTRPSLINILINPSAD 1050 (1065)
Q Consensus 1011 ~g~~~~~~---~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 1050 (1065)
||.+...| ++.+++.+|++++.+..++|++|++.|-+...
T Consensus 204 ~Gw~~~~v~DG~D~~ai~~A~~~a~~~~~~P~~I~~~T~~g~G 246 (653)
T TIGR00232 204 YGWEVLEVEDGHDLAAIDAAIEEAKASKDKPTLIEVTTTIGFG 246 (653)
T ss_pred cCCcEEEeCCCCCHHHHHHHHHHHHhCCCCCEEEEEEeeeccc
Confidence 99999998 46889999999887653589999999965443
No 255
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=97.35 E-value=0.0008 Score=76.80 Aligned_cols=107 Identities=13% Similarity=0.152 Sum_probs=79.7
Q ss_pred EEeccc-cccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHH
Q psy14416 931 IVNNNG-IYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMA 1009 (1065)
Q Consensus 931 ~~~gd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1065)
++.||| +| ....+.+.-+ .+.+.+|++|++||.. |+.-... ...-...|..+++.|.....+..|...+|.
T Consensus 156 v~gGDG~~y-dIG~~~l~ha-----~~r~~ni~~iv~DNe~-Y~nTGgQ-~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~ 227 (365)
T cd03377 156 IIGGDGWAY-DIGYGGLDHV-----LASGENVNILVLDTEV-YSNTGGQ-ASKATPLGAVAKFAAAGKRTGKKDLGMIAM 227 (365)
T ss_pred EEecchhhh-ccchhhHHHH-----HHcCCCeEEEEECCcc-cccCCCc-CCCCCCCcCcCccCCCCCCCCCcCHHHHHH
Confidence 999998 55 7777788766 6678889999999954 5532211 111223355566666666667799999999
Q ss_pred HcCCCeEe---e-CCHHHHHHHHHHHHhcCCCCEEEEEEeC
Q psy14416 1010 VFGHDGYL---C-TTVPQIKQAMKKCLQTTTRPSLINILIN 1046 (1065)
Q Consensus 1010 ~~g~~~~~---~-~~~~~l~~~~~~~~~~~~~~~li~~~~~ 1046 (1065)
++|..|+- + .+..++.++++++++. ++|++|+|..+
T Consensus 228 a~g~~YVA~~s~~~~~~~~~~~i~eA~~~-~Gps~I~v~sP 267 (365)
T cd03377 228 SYGNVYVAQIALGANDNQTLKAFREAEAY-DGPSLIIAYSP 267 (365)
T ss_pred HcCCCEEEEEecccCHHHHHHHHHHHhcC-CCCEEEEEEcc
Confidence 99999874 3 2668999999999987 99999999885
No 256
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=97.34 E-value=0.0022 Score=75.14 Aligned_cols=154 Identities=14% Similarity=0.013 Sum_probs=115.2
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc------CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ------EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGP 339 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~------~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGp 339 (1065)
-+++-++++...++.|++.+++.|+++.+++.+.+.+ -+.+++..-+|.+|..||.|-+.+-.| ++..||||
T Consensus 6 ~~~GNeAvA~aa~~Ag~~v~a~YPITPsTei~e~la~~~~~g~~~~~~v~~EsE~aA~~~~~GAs~aGaR--a~TaTS~~ 83 (394)
T PRK08367 6 VMKANEAAAWAAKLAKPKVIAAFPITPSTLVPEKISEFVANGELDAEFIKVESEHSAISACVGASAAGVR--TFTATASQ 83 (394)
T ss_pred eccHHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhcCCcCeEEEEeCCHHHHHHHHHHHHhhCCC--eEeeeccc
Confidence 4689999999999999999999999999999888743 257889999999999999887765444 56689999
Q ss_pred cccccccccccccccCcceEeecCCCccCCCCCCCCCccChhhhh--cccccEEeeCCChhhHHHHHHHHHHHhhcCC-C
Q psy14416 340 GLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELA--RPYCKYSARPPNIHLIGQHVEKAVRLSTFGK-P 416 (1065)
Q Consensus 340 G~~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~--~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~-~ 416 (1065)
|+.=....+.-|...++|+++..+.|.... .... ..||.++. +..-....-..++.++......|++.|...+ .
T Consensus 84 Gl~lm~E~l~~aag~~lP~V~vv~~R~~~~-p~~i--~~d~~D~~~~rd~g~~~~~a~~~QEa~D~~~~Af~lAE~~~~~ 160 (394)
T PRK08367 84 GLALMHEVLFIAAGMRLPIVMAIGNRALSA-PINI--WNDWQDTISQRDTGWMQFYAENNQEALDLILIAFKVAEDERVL 160 (394)
T ss_pred hHHHHhhHHHHHHHccCCEEEEECCCCCCC-CCCc--CcchHHHHhccccCeEEEeCCCHHHHHHHHHHHHHHHHHhCcC
Confidence 999999999999999999999988876553 1110 01333221 2211122233677888889999999997433 2
Q ss_pred CEEEEecC
Q psy14416 417 GVSYLDFP 424 (1065)
Q Consensus 417 GPV~L~iP 424 (1065)
-||.+..-
T Consensus 161 ~Pviv~~D 168 (394)
T PRK08367 161 LPAMVGFD 168 (394)
T ss_pred CCEEEEec
Confidence 46766654
No 257
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=97.34 E-value=0.0011 Score=78.16 Aligned_cols=155 Identities=13% Similarity=-0.003 Sum_probs=118.7
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc---C---CceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ---E---GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGP 339 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~---~---~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGp 339 (1065)
-+++.++++....+.|++.+++.|+++.+++.+.+.+ + +..++..-+|.+|..||.|-+..-.| ++..||||
T Consensus 12 ~~~GNeAiA~ga~~Ag~~~~a~YPITPsTeI~e~la~~~~~g~~~~~~vq~E~E~~A~~~~~GAs~aGaR--a~TaTS~~ 89 (407)
T PRK09622 12 VWDGNTAASNALRQAQIDVVAAYPITPSTPIVQNYGSFKANGYVDGEFVMVESEHAAMSACVGAAAAGGR--VATATSSQ 89 (407)
T ss_pred ecchHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhCCCcCcEEEeeccHHHHHHHHHHHHhhCcC--EEeecCcc
Confidence 4789999999999999999999999999999888743 2 36788899999999999887764433 56689999
Q ss_pred cccccccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhc-ccccE-EeeCCChhhHHHHHHHHHHHhhcC-CC
Q psy14416 340 GLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR-PYCKY-SARPPNIHLIGQHVEKAVRLSTFG-KP 416 (1065)
Q Consensus 340 G~~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~-~~~k~-s~~l~~~~~i~~~i~~A~~~A~~~-~~ 416 (1065)
|+.=...++.-|...++|+|+...+|.... . ..-..||.+++. ..+.| .....++.++-+...+|++.|... -.
T Consensus 90 Gl~lm~E~l~~aa~~~~P~V~~~~~R~~~~-~--~~i~~d~~D~~~~r~~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~~ 166 (407)
T PRK09622 90 GLALMVEVLYQASGMRLPIVLNLVNRALAA-P--LNVNGDHSDMYLSRDSGWISLCTCNPQEAYDFTLMAFKIAEDQKVR 166 (407)
T ss_pred hHHHHhhHHHHHHHhhCCEEEEEeccccCC-C--cCCCchHHHHHHHhcCCeEEEeCCCHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999988887432 1 111124433322 22333 455678889999999999999643 24
Q ss_pred CEEEEecCh
Q psy14416 417 GVSYLDFPA 425 (1065)
Q Consensus 417 GPV~L~iP~ 425 (1065)
-||.+..--
T Consensus 167 ~Pviv~~Dg 175 (407)
T PRK09622 167 LPVIVNQDG 175 (407)
T ss_pred CCEEEEech
Confidence 678776543
No 258
>PRK12754 transketolase; Reviewed
Probab=97.31 E-value=0.00049 Score=85.52 Aligned_cols=98 Identities=17% Similarity=0.153 Sum_probs=66.9
Q ss_pred EEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHH
Q psy14416 931 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAV 1010 (1065)
Q Consensus 931 ~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1065)
+++|||.+ .-....+.+ +-..+++||-.|+|++||++ . ++ +. +.....-|..+..++
T Consensus 151 ~~~GDGel--~EG~~~EA~--~~A~~~kL~nLi~ivD~N~~-~-id----------g~-------~~~~~~~~~~~r~~a 207 (663)
T PRK12754 151 AFMGDGCM--MEGISHEVC--SLAGTLKLGKLIAFYDDNGI-S-ID----------GH-------VEGWFTDDTAMRFEA 207 (663)
T ss_pred EEECcchh--hchHHHHHH--HHHHHhCCCCEEEEEEcCCC-c-cC----------cc-------hhhccCccHHHHHHh
Confidence 99999999 332222211 11266899977777777774 1 11 11 111123578999999
Q ss_pred cCCCeEe-eC--CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 1011 FGHDGYL-CT--TVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 1011 ~g~~~~~-~~--~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
||.+... |. +.+++.+|++++....++|++|++.|-.....
T Consensus 208 ~Gw~vi~vvDG~D~~ai~~A~~~a~~~~~~Pt~I~~~T~~g~G~ 251 (663)
T PRK12754 208 YGWHVIRGIDGHDADSIKRAVEEARAVTDKPSLLMCKTIIGFGS 251 (663)
T ss_pred cCCeEEeeECCCCHHHHHHHHHHHHhcCCCCEEEEEEeeeccCc
Confidence 9999988 54 78999999998876458999999999765443
No 259
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=97.29 E-value=0.00038 Score=79.61 Aligned_cols=119 Identities=24% Similarity=0.261 Sum_probs=80.1
Q ss_pred ccCCCcchhHHHHHHhhhccc-----C-----CCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCeeeeccc
Q psy14416 177 FGTMGVGLGFALAAALYCNHY-----A-----PGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNGIYGGFD 244 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~-----~-----p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~gy~~g~~ 244 (1065)
-|++|+|++.|+|.++|.+.. + -+.+|+|++|||.+|=. -+.+..+..++|+-+++|+++++. .++
T Consensus 110 tGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~~--q~d 187 (332)
T PF00456_consen 110 TGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGHYKLDNLIVIYDSNGI--QID 187 (332)
T ss_dssp -SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEEESE--ETT
T ss_pred ccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHHhCCCCEEEEEecCCc--ccC
Confidence 589999999999999986532 1 25799999999998765 566778999999988888877633 111
Q ss_pred cchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHH
Q psy14416 245 EATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIG 324 (1065)
Q Consensus 245 ~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~a 324 (1065)
- .. .....+-+.+.++..|-+.+-.+-|.....+..|+ -.+
T Consensus 188 g------------~~------~~~~~~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~---------------------~~a 228 (332)
T PF00456_consen 188 G------------PT------DIVFSEDIAKKFEAFGWNVIEVCDGHDVEAIYAAI---------------------EEA 228 (332)
T ss_dssp E------------EG------GGTHHSHHHHHHHHTT-EEEEEEETTBHHHHHHHH---------------------HHH
T ss_pred C------------Cc------ccccchHHHHHHHHhhhhhcccccCcHHHHHHHHH---------------------HHH
Confidence 0 00 11223446888899998877766787776665443 344
Q ss_pred HH-hCCCeEEEEe
Q psy14416 325 YL-TKKPGVCLVV 336 (1065)
Q Consensus 325 r~-tgkpgv~~~t 336 (1065)
+. ++||.++++.
T Consensus 229 ~~~~~kP~~Ii~~ 241 (332)
T PF00456_consen 229 KASKGKPTVIIAR 241 (332)
T ss_dssp HHSTSS-EEEEEE
T ss_pred HhcCCCCceeecc
Confidence 54 4999999986
No 260
>PRK12753 transketolase; Reviewed
Probab=97.28 E-value=0.00048 Score=86.00 Aligned_cols=98 Identities=18% Similarity=0.129 Sum_probs=66.1
Q ss_pred EEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHH
Q psy14416 931 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAV 1010 (1065)
Q Consensus 931 ~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1065)
+++|||.+ .-.+.++.+ +-..+++||-.|+|+|||++ + ++ +... ....-|..+..++
T Consensus 151 ~~~GDGel--~EG~~~EA~--~~A~~~kL~nLi~ivd~N~~-~-i~----------~~~~-------~~~~~~~~~~f~a 207 (663)
T PRK12753 151 VFMGDGCL--MEGISHEVC--SLAGTLGLGKLIGFYDHNGI-S-ID----------GETE-------GWFTDDTAKRFEA 207 (663)
T ss_pred EEECcCcc--ccHHHHHHH--HHHHHHCCCCEEEEEECCCC-c-CC----------CChh-------hhcChhHHHHHHH
Confidence 99999999 333322222 11266899866777777773 1 11 1111 1112467889999
Q ss_pred cCCCeEe-eC--CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 1011 FGHDGYL-CT--TVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 1011 ~g~~~~~-~~--~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
||.++.. |. +.++|.+|++++.+..++|++|++.|-.....
T Consensus 208 ~Gw~~~~~vDGhD~~~i~~a~~~a~~~~~~P~~I~~~T~kG~G~ 251 (663)
T PRK12753 208 YHWHVIHEIDGHDPQAIKEAILEAQSVKDKPSLIICRTIIGFGS 251 (663)
T ss_pred cCCeEEceeCCCCHHHHHHHHHHHHHCCCCeEEEEEEEeecCCC
Confidence 9999984 64 78899999998876558999999999765443
No 261
>PLN02790 transketolase
Probab=97.25 E-value=0.0016 Score=81.29 Aligned_cols=120 Identities=23% Similarity=0.271 Sum_probs=80.3
Q ss_pred cccCCCcchhHHHHHHhhhccc-----CC-----CCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCeeeecc
Q psy14416 176 TFGTMGVGLGFALAAALYCNHY-----AP-----GKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNGIYGGF 243 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~-----~p-----~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~gy~~g~ 243 (1065)
..|++|.+++.|+|.++|.+.. .+ +++|+|++|||+++=. -+.+..+..++||.+++|+||++| ..
T Consensus 103 ~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~--~i 180 (654)
T PLN02790 103 TTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHI--SI 180 (654)
T ss_pred cCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCCc--cc
Confidence 3688999999999999997632 22 6899999999998754 667778899999988888888866 22
Q ss_pred ccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecC-CchhhhHHHhhcCCceEEEccCCchHHHHHHH
Q psy14416 244 DEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVG-IPVIELAMACQQEGIHYIGMRNEQAACYAAQA 322 (1065)
Q Consensus 244 ~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG-~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g 322 (1065)
+.+.- ....+-+.+..+..|.+++-..-| .....+ ..|.-
T Consensus 181 ~~~~~------------------~~~~~~~~~~f~a~G~~~~~vdgg~hd~~~l---------------------~~a~~ 221 (654)
T PLN02790 181 DGDTE------------------IAFTEDVDKRYEALGWHTIWVKNGNTDYDEI---------------------RAAIK 221 (654)
T ss_pred cCCcc------------------cccchhHHHHHHHcCCeEEEECCCCCCHHHH---------------------HHHHH
Confidence 21000 001234566777777777653333 233333 33444
Q ss_pred HHHH-hCCCeEEEEe
Q psy14416 323 IGYL-TKKPGVCLVV 336 (1065)
Q Consensus 323 ~ar~-tgkpgv~~~t 336 (1065)
.++. +++|.++.+.
T Consensus 222 ~a~~~~~~P~lI~~~ 236 (654)
T PLN02790 222 EAKAVTDKPTLIKVT 236 (654)
T ss_pred HHHhcCCCeEEEEEE
Confidence 5554 6889988875
No 262
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=97.24 E-value=0.00063 Score=67.47 Aligned_cols=80 Identities=28% Similarity=0.370 Sum_probs=56.3
Q ss_pred HHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCc--cccc-HHHHhhh-----------
Q psy14416 491 QASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHP--NCVS-AARTHAL----------- 556 (1065)
Q Consensus 491 ~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hp--l~lg-~~~~~al----------- 556 (1065)
-++.++++||||++|+|..+.+.+..+.+.+|+|+.++|+++|..+.+.+-+..- -+.+ ......+
T Consensus 27 v~ammIkkAkrPLlivGp~~~dee~~E~~vKi~ekfnipivaTa~~~~~~~~~~i~~~~~~lh~it~~l~Dp~w~G~dg~ 106 (170)
T COG1880 27 VVAMMIKKAKRPLLIVGPLALDEELLELAVKIIEKFNIPIVATASSMGNLIGRGIGSEYINLHAITQYLTDPNWPGFDGN 106 (170)
T ss_pred HHHHHHHhcCCceEEecccccCHHHHHHHHHHHHhcCCceEecchhhcchhhcccccchhHHHHHHHHhcCCCCCCcCCC
Confidence 3567899999999999999887888899999999999999999876543221100 0001 1111111
Q ss_pred cCCCEEEEeCCccc
Q psy14416 557 QNADLVLLLGARLN 570 (1065)
Q Consensus 557 ~~aDlVI~iG~~~~ 570 (1065)
.+.|+||.+|+..-
T Consensus 107 g~yDlviflG~~~y 120 (170)
T COG1880 107 GNYDLVIFLGSIYY 120 (170)
T ss_pred CCcceEEEEeccHH
Confidence 36899999998753
No 263
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=97.23 E-value=0.0075 Score=72.12 Aligned_cols=110 Identities=14% Similarity=0.043 Sum_probs=63.7
Q ss_pred ccCCchHHHHHHHHHHHhCCCeEEEEec--cccccccccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhccc
Q psy14416 310 MRNEQAACYAAQAIGYLTKKPGVCLVVS--GPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPY 387 (1065)
Q Consensus 310 ~~~E~~A~~~A~g~ar~tgkpgv~~~ts--GpG~~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~ 387 (1065)
..-|+.|.-+|.|+|..--||.|++-.. =-|-=++ +++--.++.||++..-+...--.+-..+|-+-...+++++
T Consensus 364 GIAEQHAVT~AAGlA~~G~kPvvaIYSTFLQRAYDQl---iHDvaiqnLPV~faIDRAGivG~DG~TH~G~fDls~l~~i 440 (627)
T COG1154 364 GIAEQHAVTFAAGLAAEGMKPVVAIYSTFLQRAYDQL---IHDVAIQNLPVTFAIDRAGIVGADGPTHQGLFDLSFLRCI 440 (627)
T ss_pred hhhHHHHHHHHHHHHhCCCCCEEEEecHHHHHHHHHH---HHHHHhccCCeEEEEecCcccCCCCCccccHHHHHHHhcC
Confidence 4457778888888887777777765421 0011111 2333456888887654333222222334554346788888
Q ss_pred ccEEeeC-CChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 388 CKYSARP-PNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 388 ~k~s~~l-~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
.....-. ++.+++.+.+..|+. ..-||+-|-.|..
T Consensus 441 Pnmvi~aP~de~el~~ml~ta~~----~~~gP~AiRyPrg 476 (627)
T COG1154 441 PNMVIMAPRDEEELRQMLYTALA----QDDGPVAIRYPRG 476 (627)
T ss_pred CCcEEecCCCHHHHHHHHHHHHh----cCCCCeEEEecCC
Confidence 8776654 344555555555543 4458999999955
No 264
>PRK12754 transketolase; Reviewed
Probab=97.14 E-value=0.0021 Score=80.08 Aligned_cols=120 Identities=20% Similarity=0.215 Sum_probs=84.4
Q ss_pred cccCCCcchhHHHHHHhhhcccC----------CCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCeeeecc
Q psy14416 176 TFGTMGVGLGFALAAALYCNHYA----------PGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNGIYGGF 243 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~~----------p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~gy~~g~ 243 (1065)
..|++|.|++.|+|.++|.+... -+.+++|++|||+++=. -+.+..+..++||.+++|++|++| .+
T Consensus 112 stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~~--~i 189 (663)
T PRK12754 112 TTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGI--SI 189 (663)
T ss_pred cCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCCC--cc
Confidence 36899999999999999976543 26899999999998754 566778899999987777777755 22
Q ss_pred ccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHH
Q psy14416 244 DEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAI 323 (1065)
Q Consensus 244 ~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ 323 (1065)
+- .. . ... .+-+.+.++..|.+.+-.+-|.....+.+|+ .-
T Consensus 190 dg------------~~-~----~~~-~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~---------------------~~ 230 (663)
T PRK12754 190 DG------------HV-E----GWF-TDDTAMRFEAYGWHVIRGIDGHDADSIKRAV---------------------EE 230 (663)
T ss_pred Cc------------ch-h----hcc-CccHHHHHHhcCCeEEeeECCCCHHHHHHHH---------------------HH
Confidence 11 00 0 011 2457888888998887656777655554332 23
Q ss_pred HHH-hCCCeEEEEe
Q psy14416 324 GYL-TKKPGVCLVV 336 (1065)
Q Consensus 324 ar~-tgkpgv~~~t 336 (1065)
++. +++|.++++.
T Consensus 231 a~~~~~~Pt~I~~~ 244 (663)
T PRK12754 231 ARAVTDKPSLLMCK 244 (663)
T ss_pred HHhcCCCCEEEEEE
Confidence 333 5889998885
No 265
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=97.11 E-value=0.0031 Score=72.67 Aligned_cols=64 Identities=20% Similarity=0.168 Sum_probs=51.0
Q ss_pred cccCCCcchhHHHHHHhhhcc-------cCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCee
Q psy14416 176 TFGTMGVGLGFALAAALYCNH-------YAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNGI 239 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~-------~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~gy 239 (1065)
.-|++|.|++.|+|.+++... ...+.+|+|++|||.++=. -+.+..+..++|+-+++|+|+++.
T Consensus 116 sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~ 188 (386)
T cd02017 116 PTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQ 188 (386)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCC
Confidence 358999999999999998764 2357899999999998764 455667889999877777777644
No 266
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=97.00 E-value=0.97 Score=59.50 Aligned_cols=157 Identities=17% Similarity=0.117 Sum_probs=101.9
Q ss_pred cCccHHHHHHHHH-------HhcCce---EEEeecCCchhhhHHHhh-------cCCceEEEccCCchHHHHHHHHHHHh
Q psy14416 265 EELSANQVIAQAL-------KFQGIE---YVFGIVGIPVIELAMACQ-------QEGIHYIGMRNEQAACYAAQAIGYLT 327 (1065)
Q Consensus 265 ~~~~~~~~l~~~L-------~~~GV~---~vfg~pG~~~~~l~~al~-------~~~i~~i~~~~E~~A~~~A~g~ar~t 327 (1065)
.-+++-++|++.+ .+.|++ .+-|.||+++..+.+.|. +++|.+-...||-.|+-|..|--++-
T Consensus 29 ~~l~G~qAlvR~~l~q~~~D~~aGl~tag~vsgYpGSPl~~id~~l~~~~~~l~~~~i~fe~~~NEklAatav~Gsq~~e 108 (1186)
T PRK13029 29 IYISGTQALVRLPLLQRARDRRAGLNTAGFISGYRGSPLGALDQALWKAKKHLAAADVVFQPGVNEELAATAVWGSQQLE 108 (1186)
T ss_pred EeecHHHHHHHHHHHHhHHHHHcCCCccceEEecCCCCHHHHHHHHHHHhhhccccceEEeecCCHHHHHHHhhhhhhcc
Confidence 3578999999999 999999 999999999999988873 23599999999999988777755422
Q ss_pred CCC-----eE--EEEecccccccccccccccc--cc--CcceEeecCCCccCCCCCCCCCccChhhhhccccc-EEeeCC
Q psy14416 328 KKP-----GV--CLVVSGPGLLHTFGGMANAQ--IN--CWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCK-YSARPP 395 (1065)
Q Consensus 328 gkp-----gv--~~~tsGpG~~N~~~av~eA~--~~--~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k-~s~~l~ 395 (1065)
-.+ || +...=|||+==+.=++..+- .. +=-||+++||-|..+-- |.-.|.+.+....+ -..+..
T Consensus 109 ~~~~a~~dGv~~lwygK~pGvn~aaD~l~h~n~~gt~~~GGvv~v~gDDpg~~SS----q~eqdSr~~~~~a~iPvl~Ps 184 (1186)
T PRK13029 109 LDPGAKRDGVFGMWYGKGPGVDRSGDALRHANLAGTSPLGGVLVLAGDDHGAKSS----SVAHQSDHTFIAWGIPVLYPA 184 (1186)
T ss_pred cccceeeccceEEEecCcCCcccchhHHHHhhccccCCCCcEEEEEecCCCCccc----cCHHHHHHHHHHcCCceeCCC
Confidence 111 11 22234676433333332221 11 23589999987765432 33333333333322 355677
Q ss_pred ChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 396 NIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 396 ~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
++.++.+....||..+.... -||-+-.=.+
T Consensus 185 ~~qE~~d~~~~a~~lSr~~g-~~V~lr~~t~ 214 (1186)
T PRK13029 185 SVQDYLDYGLHGWAMSRYSG-LWVGMKCVTE 214 (1186)
T ss_pred CHHHHHHHHHHHHHHHHHhC-CCEEEEEeee
Confidence 88889999999999886432 4565554433
No 267
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=96.99 E-value=0.011 Score=68.85 Aligned_cols=151 Identities=14% Similarity=0.055 Sum_probs=114.7
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh----CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCc
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGP 81 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~----~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GP 81 (1065)
|..|++.++++......|++.+.+.|=+...++++.+.+ .+..++..-+|.+|..|+.|-+ .+|. -+...|+||
T Consensus 3 ~~~~~Gn~AvA~~a~~a~~~~~a~YPITPss~i~e~l~~~~~~~~~~~vq~EsE~~a~s~v~GA~-~aGa-r~~TaTSg~ 80 (365)
T COG0674 3 MVVMDGNEAVAYAAIAAGCRVIAAYPITPSSEIAEYLASWKAKVGGVFVQMESEIGAISAVIGAS-YAGA-RAFTATSGQ 80 (365)
T ss_pred eEeccHHHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHhhcCcEEEEeccHHHHHHHHHHHH-hhCc-ceEeecCCc
Confidence 566899999999999999999999999999999888753 3699999999999999999944 4563 344669999
Q ss_pred chhhhhHHHhhcccCCCcEEEEecCCCCCcCccCC---CcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCC
Q psy14416 82 GLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGG---FQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKP 158 (1065)
Q Consensus 82 G~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~---~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rp 158 (1065)
|++-+..++.-|.....|+++...+++....+... +|++-+..-. .+..... .+..++-....+|++.|...+
T Consensus 81 Gl~Lm~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~~~dq~D~~~~r~~-g~~~~~~--~s~qEa~d~t~~Af~iAe~~~- 156 (365)
T COG0674 81 GLLLMAEALGLAAGTETPLVIVVAQRPLPSTGLPIKGDQSDLMAARDT-GFPILVS--ASVQEAFDLTLLAFNIAEKVL- 156 (365)
T ss_pred cHHHHHHHHHHHHhccCCeEEEEeccCcCCCcccccccHHHHHHHHcc-CceEEee--ccHHHHHHHHHHHHHHHHHhc-
Confidence 99999999999999999999999988877655533 3332221111 1122222 256777788888898887633
Q ss_pred cccc
Q psy14416 159 GRSL 162 (1065)
Q Consensus 159 GP~~ 162 (1065)
-|+.
T Consensus 157 ~Pvi 160 (365)
T COG0674 157 TPVI 160 (365)
T ss_pred CCEE
Confidence 4433
No 268
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=96.93 E-value=0.013 Score=72.61 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=44.5
Q ss_pred chhHHHHHHhhhcccCCCCeEEEEeCCCCcc--ccHHHHHHhhhcCCCEEEEEEcCCee
Q psy14416 183 GLGFALAAALYCNHYAPGKRVVCVQGDSAFG--FSGMELETLVRYRLPVILVIVNNNGI 239 (1065)
Q Consensus 183 gl~~AlGaala~~~~~p~rrvV~l~GDGsf~--m~~~eL~t~vr~~lpivivV~NN~gy 239 (1065)
++++|+|.+.|..+...+++||+++|||++. |.-+.|-.+...+-+++| |+|++..
T Consensus 194 SiSaalG~a~ardl~g~~~~vvaVIGDGaltgGma~EaLN~~g~~~~~liv-ILNDN~m 251 (701)
T PLN02225 194 SISAGLGLAVARDIKGKRDRVVAVIDNATITAGQAYEAMSNAGYLDSNMIV-ILNDSRH 251 (701)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEcCcchhhhhHHHHHhhhhccCCCEEE-EEeCCCC
Confidence 5999999999988888999999999999964 556777788887777555 5555533
No 269
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=96.84 E-value=0.0033 Score=71.77 Aligned_cols=89 Identities=21% Similarity=0.297 Sum_probs=57.8
Q ss_pred EEecccccc--C-cchhhHHHhhccCccccCCCEEEEEEcCCc-ccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHH
Q psy14416 931 IVNNNGIYG--G-FDETTYASIVESGEVTTVLPVILVIVNNNG-IYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEK 1006 (1065)
Q Consensus 931 ~~~gd~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1065)
++.|||+=- + +-..+++.. ++||++.+|-||.- | ..+... ....-.+..
T Consensus 164 ~~~GDGat~qG~FhEalN~A~v-------~klPvvf~ieNN~yAi--Svp~~~------------------q~~~~~~~~ 216 (358)
T COG1071 164 AFFGDGATNQGDFHEALNFAAV-------WKLPVVFVIENNQYAI--SVPRSR------------------QTAAEIIAA 216 (358)
T ss_pred EEecCCccccchHHHHHHHHHH-------hcCCEEEEEecCCcee--ecchhh------------------cccchhHHh
Confidence 899998753 3 345688888 99999999888842 2 122210 111223555
Q ss_pred HHHHcCCCeEeeCC--HHHH----HHHHHHHHhcCCCCEEEEEEeCC
Q psy14416 1007 MMAVFGHDGYLCTT--VPQI----KQAMKKCLQTTTRPSLINILINP 1047 (1065)
Q Consensus 1007 ~~~~~g~~~~~~~~--~~~l----~~~~~~~~~~~~~~~li~~~~~~ 1047 (1065)
=+.+||+.+++|.- +-.. ++|.+++.+. .+|+|||+++-+
T Consensus 217 ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g-~GPtLIE~~tYR 262 (358)
T COG1071 217 RAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAG-EGPTLIEAVTYR 262 (358)
T ss_pred hhhccCCCeEEECCcCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEee
Confidence 67899999999963 3333 4444555443 789999999943
No 270
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=96.79 E-value=0.0082 Score=63.49 Aligned_cols=105 Identities=25% Similarity=0.338 Sum_probs=74.8
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCeeeeccccchhhhhhhh
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDII 254 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~~~~l~ 254 (1065)
-||+|+|++.|+|.++++++...+.+|.++.|||-++=. =+.+.+++.|+|.-++.+++-++. + .
T Consensus 118 tGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG~~WEAam~Aah~~L~NLiaivD~N~~---------Q----l 184 (243)
T COG3959 118 TGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAIVDRNKL---------Q----L 184 (243)
T ss_pred CCcccccchHHHHHHHHHhhcCCCceEEEEecCcccccccHHHHHHHHHHhccCcEEEEEecCCc---------c----c
Confidence 589999999999999999999999999999999987654 344558889999977776654311 0 0
Q ss_pred hccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhh
Q psy14416 255 KKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQ 301 (1065)
Q Consensus 255 ~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~ 301 (1065)
+ +. ...+...+-|.+..++.|-+ |.=|-|..+..+..+++
T Consensus 185 -d-G~----t~~i~~~~pL~~k~eAFGw~-V~evdG~d~~~i~~a~~ 224 (243)
T COG3959 185 -D-GE----TEEIMPKEPLADKWEAFGWE-VIEVDGHDIEEIVEALE 224 (243)
T ss_pred -C-Cc----hhhccCcchhHHHHHhcCce-EEEEcCcCHHHHHHHHH
Confidence 1 11 12333445567777777754 45567777777776664
No 271
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=96.76 E-value=0.0078 Score=66.50 Aligned_cols=92 Identities=15% Similarity=0.240 Sum_probs=58.4
Q ss_pred EEEEeccccc-c--Ccch-hhHHHhhccCccccCCC---EEEEEEcCCcccCC-CchhhHhHHhhcCCcccCCCCCCCCC
Q psy14416 929 LVIVNNNGIY-G--GFDE-TTYASIVESGEVTTVLP---VILVIVNNNGIYGG-FDEATYASIVESGEVTTVSPPTSLGP 1000 (1065)
Q Consensus 929 ~~~~~gd~~~-~--~~~~-~~~~~~~~~~~~~~~~~---~~~~v~nn~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 1000 (1065)
.|++.|||+| + .+++ .+++.+ .++| ++.||.|| +| +. .+.. ....
T Consensus 143 ~v~~~GDgA~~~qG~~~EalNlA~l-------~~lp~gg~ifvveNN-q~-g~sT~~~------------------~~~~ 195 (265)
T cd02016 143 PILIHGDAAFAGQGVVYETLNLSNL-------PGYTTGGTIHIVVNN-QI-GFTTDPR------------------DSRS 195 (265)
T ss_pred EEEEecCccccCCChHHHHHHHHHh-------cCCCCCCEEEEEEeC-CE-EEEecHH------------------Hhcc
Confidence 3499999997 2 2222 255544 5777 78778887 42 11 1110 0112
Q ss_pred CccHHHHHHHcCCCeEeeC--CHHHHHHHHHHHHh---cCCCCEEEEEEeCC
Q psy14416 1001 SLRYEKMMAVFGHDGYLCT--TVPQIKQAMKKCLQ---TTTRPSLINILINP 1047 (1065)
Q Consensus 1001 ~~~~~~~~~~~g~~~~~~~--~~~~l~~~~~~~~~---~~~~~~li~~~~~~ 1047 (1065)
..+..+.|++||+.+++|+ ++++..++++++++ ...+|+|||+.+-+
T Consensus 196 ~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~gp~lIe~~tYR 247 (265)
T cd02016 196 SPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFKKDVVIDLVCYR 247 (265)
T ss_pred cccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEEec
Confidence 3456789999999999875 55566666665553 23789999999954
No 272
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=96.70 E-value=0.00086 Score=76.71 Aligned_cols=152 Identities=18% Similarity=0.133 Sum_probs=87.9
Q ss_pred ccee-eecceEEEEeccccccccccchhhhhheecccc------ccccccEEEEEccCcccCCccccccceeccccceee
Q psy14416 851 GEVT-TVLPVILVIVNNNGIYGGFDETTYASIVESGEV------TTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTT 923 (1065)
Q Consensus 851 ~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 923 (1065)
|++. +..|-+-..-|++|-+++.|+ |.++|.+... ....-+..|+
T Consensus 96 gHP~~~~~~gie~stGsLGqGl~~av--G~Ala~k~~~~~~n~~~~~~~~~~vy-------------------------- 147 (332)
T PF00456_consen 96 GHPEYGKTPGIEASTGSLGQGLSIAV--GMALAEKMLGARFNKPGFDIIDHRVY-------------------------- 147 (332)
T ss_dssp SSTTTTTSTT-SS--SSTTHHHHHHH--HHHHHHHHHHHHHHBTTBSTTT--EE--------------------------
T ss_pred CCCcccCCceeEeeccchhcchhhHH--HHHHHHHHHHhhhcccccccccceEE--------------------------
Confidence 3443 445555566677777777766 6666653211 0112345788
Q ss_pred eccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCcc
Q psy14416 924 VLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLR 1003 (1065)
Q Consensus 924 ~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1003 (1065)
+++|||-+ .-.+.+..+ +-..+++|+=.|+|+++|++ .++ |. +.....-|
T Consensus 148 -------~l~GDGel--~EG~~~EA~--~~A~~~~L~nLi~i~D~N~~--q~d----------g~-------~~~~~~~~ 197 (332)
T PF00456_consen 148 -------VLMGDGEL--QEGSVWEAA--SLAGHYKLDNLIVIYDSNGI--QID----------GP-------TDIVFSED 197 (332)
T ss_dssp -------EEEEHHHH--HSHHHHHHH--HHHHHTT-TTEEEEEEEESE--ETT----------EE-------GGGTHHSH
T ss_pred -------EEecCccc--cchhhHHHH--HHHHHhCCCCEEEEEecCCc--ccC----------CC-------cccccchH
Confidence 99999999 333322222 11267788845555566563 011 11 11112246
Q ss_pred HHHHHHHcCCCeEee---CCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC--CcchhhhhH
Q psy14416 1004 YEKMMAVFGHDGYLC---TTVPQIKQAMKKCLQTTTRPSLINILINPSADR--KPQNFSWLT 1060 (1065)
Q Consensus 1004 ~~~~~~~~g~~~~~~---~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~--~~~~~~~~~ 1060 (1065)
..+--++||.+...| ++.++|.+|++++.+.+++|++|.+.|-..... ...+-.|+.
T Consensus 198 ~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~~~~kP~~Ii~~TvkG~G~~~~e~~~~~Hg 259 (332)
T PF00456_consen 198 IAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKASKGKPTVIIARTVKGKGVPFMEGTAKWHG 259 (332)
T ss_dssp HHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHHSTSS-EEEEEEE-TTTTSTTTTTSGGGTS
T ss_pred HHHHHHHhhhhhcccccCcHHHHHHHHHHHHHhcCCCCceeecceEEecCchhhcccchhhc
Confidence 688889999999998 799999999999987668999999999765554 223345553
No 273
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=96.52 E-value=0.003 Score=71.65 Aligned_cols=89 Identities=22% Similarity=0.302 Sum_probs=55.0
Q ss_pred EEecccccc--Ccc-hhhHHHhhccCccccCCCEEEEEEcCC-cccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHH
Q psy14416 931 IVNNNGIYG--GFD-ETTYASIVESGEVTTVLPVILVIVNNN-GIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEK 1006 (1065)
Q Consensus 931 ~~~gd~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~v~nn~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1065)
++.|||+-. .|+ ..+++.. .++|++.||.||+ || ..+.. .+ ...-++..
T Consensus 128 ~~~GDga~~qG~~~EalN~A~~-------~~lPvifvveNN~~ai--st~~~--~~----------------~~~~~~~~ 180 (300)
T PF00676_consen 128 CFFGDGATSQGDFHEALNLAAL-------WKLPVIFVVENNQYAI--STPTE--EQ----------------TASPDIAD 180 (300)
T ss_dssp EEEETGGGGSHHHHHHHHHHHH-------TTTSEEEEEEEESEET--TEEHH--HH----------------CSSSTSGG
T ss_pred EEecCcccccCccHHHHHHHhh-------ccCCeEEEEecCCccc--ccCcc--cc----------------ccccchhh
Confidence 999999974 222 3356655 8999988888884 12 11111 01 12234567
Q ss_pred HHHHcCCCeEeeC--CHHHHHHHHHHHHh---cCCCCEEEEEEeC
Q psy14416 1007 MMAVFGHDGYLCT--TVPQIKQAMKKCLQ---TTTRPSLINILIN 1046 (1065)
Q Consensus 1007 ~~~~~g~~~~~~~--~~~~l~~~~~~~~~---~~~~~~li~~~~~ 1046 (1065)
.|++||+.+++|. ++.+.-++++++++ ...+|+|||+.+-
T Consensus 181 ~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~ty 225 (300)
T PF00676_consen 181 RAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTY 225 (300)
T ss_dssp GGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE-
T ss_pred hhhccCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeec
Confidence 7899999999985 44555555555442 2379999999994
No 274
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=96.48 E-value=0.018 Score=62.09 Aligned_cols=100 Identities=21% Similarity=0.170 Sum_probs=62.9
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccH-HHHHH----hhhcCCCEEEEEEcCCeeeeccccchhhhh
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSG-MELET----LVRYRLPVILVIVNNNGIYGGFDEATYAWL 251 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~-~eL~t----~vr~~lpivivV~NN~gy~~g~~~~~~~~~ 251 (1065)
.|++|++++.|+|+++- +|+..|+|++|||.+.=.. ...|. +..+++.-++.|++|++| .++-
T Consensus 61 ~G~LG~gLs~A~G~a~d----~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~--~i~~------ 128 (227)
T cd02011 61 GGELGYSLSHAYGAVFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGY--KISN------ 128 (227)
T ss_pred ccchhhHHHHHHHhhhc----CCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCC--cccC------
Confidence 57999999999999875 7999999999999943221 11232 223444444444455556 2211
Q ss_pred hhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHH
Q psy14416 252 DIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMA 299 (1065)
Q Consensus 252 ~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~a 299 (1065)
. ........+-|.+.++..|.+.++ +-|.....+..+
T Consensus 129 -------p---t~~~~~~~e~l~~~~~~yG~~~~~-VDG~D~~av~~~ 165 (227)
T cd02011 129 -------P---TILARISHEELEALFRGYGYEPYF-VEGDDPETMHQA 165 (227)
T ss_pred -------C---ccccccCchhHHHHHHhCCCceEE-ECCCCHHHHHHH
Confidence 0 000112245688899999999998 578766555443
No 275
>KOG0523|consensus
Probab=96.47 E-value=0.063 Score=64.17 Aligned_cols=66 Identities=24% Similarity=0.332 Sum_probs=54.5
Q ss_pred ccccccCCCcchhHHHHHHhhhcccCC-CCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCe
Q psy14416 173 DAGTFGTMGVGLGFALAAALYCNHYAP-GKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNG 238 (1065)
Q Consensus 173 ~~~~~gsmG~gl~~AlGaala~~~~~p-~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~g 238 (1065)
.+-+-|++|.|++.|+|.+.+.+.... +-||+|+.|||+.+=. -+.++.|..|++..+|++++|+.
T Consensus 113 v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s~Ag~l~ldnLVai~D~n~ 181 (632)
T KOG0523|consen 113 VEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMSLAGHLKLDNLVAIYDNNK 181 (632)
T ss_pred ceeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHHhhhhhcccCCEEEEEcccc
Confidence 344458999999999999998665444 7899999999998765 56778899999999999998874
No 276
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=96.44 E-value=0.018 Score=67.11 Aligned_cols=154 Identities=15% Similarity=0.088 Sum_probs=117.4
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc----CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPG 340 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~----~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG 340 (1065)
.-+++.++++...+..|++.+.+.|=++.+++.+.+.+ .+..++..-+|.+|.-|+.|-+.+ |. .+.-.|||||
T Consensus 4 ~~~~Gn~AvA~~a~~a~~~~~a~YPITPss~i~e~l~~~~~~~~~~~vq~EsE~~a~s~v~GA~~a-Ga-r~~TaTSg~G 81 (365)
T COG0674 4 VVMDGNEAVAYAAIAAGCRVIAAYPITPSSEIAEYLASWKAKVGGVFVQMESEIGAISAVIGASYA-GA-RAFTATSGQG 81 (365)
T ss_pred EeccHHHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHhhcCcEEEEeccHHHHHHHHHHHHhh-Cc-ceEeecCCcc
Confidence 45689999999999999999999999999998877643 479999999999998888776653 33 3445799999
Q ss_pred ccccccccccccccCcceEeecCCCccCCCCC---CCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCC
Q psy14416 341 LLHTFGGMANAQINCWPMLVIGGSCAQDHEGI---GGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 417 (1065)
Q Consensus 341 ~~N~~~av~eA~~~~vPLlvItg~~p~~~~g~---ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~G 417 (1065)
++=...++.-|...++|+++...+|+....+. +++|++-+. ....+.+.... +.+++-....+|++.|..- .-
T Consensus 82 l~Lm~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~~~dq~D~~~~-r~~g~~~~~~~--s~qEa~d~t~~Af~iAe~~-~~ 157 (365)
T COG0674 82 LLLMAEALGLAAGTETPLVIVVAQRPLPSTGLPIKGDQSDLMAA-RDTGFPILVSA--SVQEAFDLTLLAFNIAEKV-LT 157 (365)
T ss_pred HHHHHHHHHHHHhccCCeEEEEeccCcCCCcccccccHHHHHHH-HccCceEEeec--cHHHHHHHHHHHHHHHHHh-cC
Confidence 99999999999999999999999999876554 233333221 11233333333 6788888889999999763 35
Q ss_pred EEEEecC
Q psy14416 418 VSYLDFP 424 (1065)
Q Consensus 418 PV~L~iP 424 (1065)
||.+.+-
T Consensus 158 Pvi~~~D 164 (365)
T COG0674 158 PVIVLLD 164 (365)
T ss_pred CEEEeec
Confidence 7766643
No 277
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=96.39 E-value=0.02 Score=72.77 Aligned_cols=64 Identities=25% Similarity=0.267 Sum_probs=51.4
Q ss_pred cccCCCcchhHHHHHHhhhc-cc------CCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCee
Q psy14416 176 TFGTMGVGLGFALAAALYCN-HY------APGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNGI 239 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~-~~------~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~gy 239 (1065)
.-||||.|++.|+|.+++.+ +. ..+++|+|++|||.++=- -+.+..+.+++|+-+++|+|++..
T Consensus 187 sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~ 259 (889)
T TIGR03186 187 PTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQ 259 (889)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCC
Confidence 35899999999999999754 22 236899999999998753 566778899999988888887744
No 278
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=96.38 E-value=0.0049 Score=69.92 Aligned_cols=61 Identities=30% Similarity=0.375 Sum_probs=50.8
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCC
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNN 237 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~ 237 (1065)
.+.+|..+|.|.|.+++.+....+.-++|+.|||+..=. -..|-.+..+++|+++||-||.
T Consensus 100 ~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~ 162 (300)
T PF00676_consen 100 SSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQ 162 (300)
T ss_dssp ESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEES
T ss_pred cccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCC
Confidence 467888899999999999888888899999999993322 4566678899999999999985
No 279
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=96.29 E-value=0.018 Score=73.34 Aligned_cols=63 Identities=24% Similarity=0.267 Sum_probs=51.6
Q ss_pred ccCCCcchhHHHHHHhhhc-------ccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCee
Q psy14416 177 FGTMGVGLGFALAAALYCN-------HYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNGI 239 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~-------~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~gy 239 (1065)
-||||.|++.|++.++... ....+++|+||+|||.++=- -+.+..+.+++|.-+++|+|++.-
T Consensus 202 TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~ 273 (896)
T PRK13012 202 TGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQ 273 (896)
T ss_pred CCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCc
Confidence 5899999999999998754 22456999999999997653 566778899999999999988743
No 280
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=96.27 E-value=0.042 Score=63.02 Aligned_cols=79 Identities=27% Similarity=0.305 Sum_probs=57.4
Q ss_pred CCCcccccccCCCccccccccccCCCcchhHHHHHHhhhcccC-CCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEE
Q psy14416 156 GKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYA-PGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILV 232 (1065)
Q Consensus 156 ~rpGP~~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~-p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpiviv 232 (1065)
||.+|.|+.. ....++. ..+.+|..++-|.|++++.+... .++=++++.|||+--=. -..|--+.=|+||+|++
T Consensus 117 Gr~~~~h~~~-~~~~~~~--~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ 193 (358)
T COG1071 117 GRGGSMHYSD-KEKGFLG--GSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFV 193 (358)
T ss_pred CCCCcccccc-cccccCC--CCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEE
Confidence 7777777642 2222222 35788999999999999988776 44488999999995432 34566778899999998
Q ss_pred EEcCC
Q psy14416 233 IVNNN 237 (1065)
Q Consensus 233 V~NN~ 237 (1065)
|-||.
T Consensus 194 ieNN~ 198 (358)
T COG1071 194 IENNQ 198 (358)
T ss_pred EecCC
Confidence 88885
No 281
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=96.27 E-value=0.013 Score=67.65 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 1020 TVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 1020 ~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
+.++|.+|++++....++|++|-+.|-.....+
T Consensus 291 D~~~i~~A~~~a~~~~~kPt~Iia~TikG~G~~ 323 (386)
T cd02017 291 DPRKVYAAYKKAVEHKGKPTVILAKTIKGYGLG 323 (386)
T ss_pred CHHHHHHHHHHHHhCCCCCeEEEEeCeecCCCC
Confidence 899999999988764579999999997766554
No 282
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=96.22 E-value=0.014 Score=65.74 Aligned_cols=60 Identities=23% Similarity=0.361 Sum_probs=54.4
Q ss_pred cCCCcchhHHHHHHhhhcccCCCCeEEEEeCCC-CccccHHHHHHhhhcCCCEEEEEEcCCeeeecc
Q psy14416 178 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLVRYRLPVILVIVNNNGIYGGF 243 (1065)
Q Consensus 178 gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDG-sf~m~~~eL~t~vr~~lpivivV~NN~gy~~g~ 243 (1065)
...|-++++|.|.++| +|++.||++.||| ++-...+.|.-+.|.|.+|++||+||..| |+
T Consensus 70 s~~gra~a~atGik~A----~~~l~Viv~gGDG~~~dIG~~~l~h~~~Rn~dit~iv~DNevY--gn 130 (294)
T COG1013 70 SLHGRAAAVATGIKLA----NPALSVIVIGGDGDAYDIGGNHLIHALRRNHDITYIVVDNEVY--GN 130 (294)
T ss_pred eccCcchhhHHHHHHh----ccCCeEEEEecchhHhhhhhHHHHHHHHcCCCeEEEEECCeec--cc
Confidence 4467789999999999 8999999999999 67778999999999999999999999987 55
No 283
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=96.07 E-value=0.036 Score=69.74 Aligned_cols=64 Identities=19% Similarity=0.155 Sum_probs=52.4
Q ss_pred cccCCCcchhHHHHHHhhhcc-------cCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCee
Q psy14416 176 TFGTMGVGLGFALAAALYCNH-------YAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNGI 239 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~-------~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~gy 239 (1065)
.-||||.|++.|+|.+++.+. ...+++|+||+|||.++=- -+.+..+.+++|.-+++|+|+++.
T Consensus 187 sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~ 259 (885)
T TIGR00759 187 PTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQ 259 (885)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCC
Confidence 358999999999999998652 2467899999999997753 556778899999988888888754
No 284
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=96.03 E-value=0.03 Score=61.20 Aligned_cols=60 Identities=22% Similarity=0.307 Sum_probs=44.1
Q ss_pred cCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcc--ccHHHHHHhhhcCCCEEEEEEcCC
Q psy14416 178 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFG--FSGMELETLVRYRLPVILVIVNNN 237 (1065)
Q Consensus 178 gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~--m~~~eL~t~vr~~lpivivV~NN~ 237 (1065)
|--+-++++|+|.+.|..+..++++||+++|||++. |.-+.|-.+...+-+++||+-+|.
T Consensus 111 GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt~Gma~EALN~~g~~~~~liVILNDN~ 172 (270)
T PF13292_consen 111 GHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALTGGMAFEALNNAGHLKSNLIVILNDNE 172 (270)
T ss_dssp SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGGSHHHHHHHHHHHHHT-SEEEEEEE-S
T ss_pred CccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchhHHHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 344557999999999988888999999999999965 557788888888888777666665
No 285
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=96.02 E-value=0.0057 Score=66.72 Aligned_cols=39 Identities=10% Similarity=0.274 Sum_probs=29.4
Q ss_pred HHHHHcCCCeEee---CCHHHHHHHHHHHHhcCCCCEEEEEEe
Q psy14416 1006 KMMAVFGHDGYLC---TTVPQIKQAMKKCLQTTTRPSLINILI 1045 (1065)
Q Consensus 1006 ~~~~~~g~~~~~~---~~~~~l~~~~~~~~~~~~~~~li~~~~ 1045 (1065)
.+=+.+|.+|+-+ .+.++|.++|+++.+. ++|+||-|.|
T Consensus 229 ~lFe~LG~~Y~GPiDGHdl~~Li~~l~~~K~~-~gPvllHV~T 270 (270)
T PF13292_consen 229 NLFEELGFDYIGPIDGHDLEELIEVLENAKDI-DGPVLLHVIT 270 (270)
T ss_dssp CCCHHCT-EEEEEEETT-HHHHHHHHHHHCCS-SSEEEEEEE-
T ss_pred HHHHHcCCeEEeccCCCCHHHHHHHHHHHhcC-CCCEEEEEeC
Confidence 3446779998865 6789999999998876 9999999875
No 286
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=95.96 E-value=0.022 Score=70.96 Aligned_cols=44 Identities=11% Similarity=0.213 Sum_probs=35.3
Q ss_pred HHHcCCCeE-ee--CCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 1008 MAVFGHDGY-LC--TTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 1008 ~~~~g~~~~-~~--~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
-++||.++. .| ++.++|.++++++.+. ++|++|.+.|.+....+
T Consensus 234 f~~~G~~~~~~vDGhd~~~l~~al~~ak~~-~~P~~i~~~T~KGkG~~ 280 (617)
T TIGR00204 234 FEELGFNYIGPVDGHDLLELIETLKNAKKL-KGPVFLHIQTKKGKGYK 280 (617)
T ss_pred HHHcCCcEEcccCCCCHHHHHHHHHHHhcC-CCCEEEEEEecCCCCCc
Confidence 577999887 34 5888999999987665 78999999998766643
No 287
>KOG0523|consensus
Probab=95.94 E-value=0.033 Score=66.44 Aligned_cols=138 Identities=19% Similarity=0.146 Sum_probs=96.6
Q ss_pred ccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceE
Q psy14416 850 SGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVIL 929 (1065)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (1065)
.|+++..+|-+-+.-|.+|-+++.+. +-+++.+.-. --+-.|+
T Consensus 103 ~ghp~~~~~~v~v~TG~lgQgis~a~--GmA~~~k~~~---k~~~rv~-------------------------------- 145 (632)
T KOG0523|consen 103 PGHPEPELPGVEVATGPLGQGISNAV--GMAYAGKHLG---KASNRVY-------------------------------- 145 (632)
T ss_pred CCCCcccCCCceeccCCccchHHHHH--HHHHHHHhhc---cccceEE--------------------------------
Confidence 46778888888888888877776666 4444332211 0245677
Q ss_pred EEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHH-HH
Q psy14416 930 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEK-MM 1008 (1065)
Q Consensus 930 ~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 1008 (1065)
+|+|||.. .-.+.++.+ |-.-.+++.-+|+|.+||-|. .+++++..++.|-.+ =+
T Consensus 146 -~vlGDG~~--~eG~~~EA~--s~Ag~l~ldnLVai~D~n~is-------------------~~g~t~~~~~~dV~~~r~ 201 (632)
T KOG0523|consen 146 -CVLGDGCL--TEGSVWEAM--SLAGHLKLDNLVAIYDNNKIS-------------------IDGATSLGFDEDVYQLRF 201 (632)
T ss_pred -EEEcCchh--ccchHHHHH--hhhhhcccCCEEEEEcccccc-------------------CCCCCcccccccHHHHHH
Confidence 99999998 333333332 223558999888888887641 144567777777777 88
Q ss_pred HHcCCCeEeeC--CHHHHHHHHHHHHhcCCCCEEEEEEeCCC
Q psy14416 1009 AVFGHDGYLCT--TVPQIKQAMKKCLQTTTRPSLINILINPS 1048 (1065)
Q Consensus 1009 ~~~g~~~~~~~--~~~~l~~~~~~~~~~~~~~~li~~~~~~~ 1048 (1065)
++||..-+.|. +.++|.+++.++....++|++|-..+-..
T Consensus 202 ea~g~~~~~V~~~d~d~i~ka~~~a~~~k~kpt~i~~~t~~g 243 (632)
T KOG0523|consen 202 EAFGWNVIIVDGGDVDEIRKAIGKAKSVKGKPTAIKATTFIG 243 (632)
T ss_pred HHhCceEEEEcCcCHHHHHHHHhhhhhccCCceeeeeeeeee
Confidence 99999987664 57899999999987778999998877443
No 288
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=95.85 E-value=0.017 Score=69.22 Aligned_cols=45 Identities=11% Similarity=0.222 Sum_probs=36.5
Q ss_pred HHHHcCCCeEee---CCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 1007 MMAVFGHDGYLC---TTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 1007 ~~~~~g~~~~~~---~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
+=+.+|.+|.-. .+.++|..+|+++.+. ++|+|+-|.|.....-+
T Consensus 238 lFeelGf~YiGPiDGHni~~Li~~Lk~~kd~-~gPvllHv~T~KGKGY~ 285 (627)
T COG1154 238 LFEELGFNYIGPIDGHNLEELIPTLKNAKDL-KGPVLLHVVTKKGKGYK 285 (627)
T ss_pred hHHHhCCeeECCcCCCCHHHHHHHHHHHhcC-CCCEEEEEEecCCCCCC
Confidence 557789998754 6789999999999886 99999999997655443
No 289
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=95.79 E-value=0.11 Score=69.20 Aligned_cols=150 Identities=14% Similarity=0.024 Sum_probs=105.7
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHH---HhC------C--CeEEEecChhhHHHHHHHHHHhcCCcEE
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMAC---QQE------G--IHYIGMRNEQAACYAAQAIGYLTKKPGV 74 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al---~~~------~--i~~v~~rhE~~A~~mA~gyar~tg~~gv 74 (1065)
|+.|+|.++++..-.+ +++.+|+.|=++..++.+.+ ... | ..++..-+|.+|..|+.|.+ .+|...
T Consensus 1 ~~~~~GNeAvA~~A~~-~~~~~~~YPITPss~i~e~l~~~~~~g~~n~~G~~~~~vq~EsE~~A~~av~GA~-~aGara- 77 (1165)
T TIGR02176 1 MKTMDGNTAAAHVAYA-FSEVAAIYPITPSSTMGEYVDDWAAQGRKNIFGQTVKVVEMQSEAGAAGAVHGAL-QTGALT- 77 (1165)
T ss_pred CeeeeHHHHHHHHHHH-hCCEEEEECCCCCcHHHHHHHHHHHhCCcccCCCCceEEEccchHHHHHHHHhHh-hcCCCE-
Confidence 3568999999998877 99999999977666676666 222 1 27999999999999999944 567544
Q ss_pred EEEeCCcchhhhhHHHhhcccCCCcEEEEecCCCCCcCc---cCCCcccchhhhcccccceeccCCCcccHHHHHHHHHH
Q psy14416 75 CLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEG---IGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVR 151 (1065)
Q Consensus 75 ~~~t~GPG~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g---~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~ 151 (1065)
...|+|||+.-+...|+.+...+.|+++...++.....+ .+.++++. ..+...--.....++.++-.....|++
T Consensus 78 ~T~TSs~GL~LM~e~l~~~ag~~~P~Vi~va~R~~~~~~~~i~~dh~Dv~---~~R~~G~ivl~s~svQEa~D~al~A~~ 154 (1165)
T TIGR02176 78 TTFTASQGLLLMIPNMYKIAGELLPCVFHVSARAIAAHALSIFGDHQDVM---AARQTGFAMLASSSVQEVMDLALVAHL 154 (1165)
T ss_pred EEecChhHHHHHHHHHHHHHhccCCEEEEEecCCCCCCCCccCCCchHHH---HhhcCCeEEEeCCCHHHHHHHHHHHHH
Confidence 466999999999999988777799999999887654333 22334332 112222122333556667777778888
Q ss_pred HhhcCCCcccc
Q psy14416 152 LSTFGKPGRSL 162 (1065)
Q Consensus 152 ~A~~~rpGP~~ 162 (1065)
.|...+ -|++
T Consensus 155 lAe~~~-~Pvi 164 (1165)
T TIGR02176 155 ATIEAR-VPFM 164 (1165)
T ss_pred HHHhcC-CCEE
Confidence 886554 4544
No 290
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=95.78 E-value=0.14 Score=61.97 Aligned_cols=119 Identities=24% Similarity=0.258 Sum_probs=88.1
Q ss_pred ccCCCcchhHHHHHHhhhccc-----CC-----CCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCeeeeccc
Q psy14416 177 FGTMGVGLGFALAAALYCNHY-----AP-----GKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNGIYGGFD 244 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~-----~p-----~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~gy~~g~~ 244 (1065)
-|++|.|++.|+|.++|.+.. +| +..+.||+|||++|=. -+..+.|-.++|.-+|++.+++.. .
T Consensus 115 TGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~I----s 190 (663)
T COG0021 115 TGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDI----S 190 (663)
T ss_pred cCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCCc----e
Confidence 599999999999999975422 23 3699999999998865 455667789999999998877632 1
Q ss_pred cchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHH
Q psy14416 245 EATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIG 324 (1065)
Q Consensus 245 ~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~a 324 (1065)
+ +........+-+.++.++.|-..+-.+-|.....+.. |.--|
T Consensus 191 i----------------DG~~~~~f~ed~~~RfeAyGW~vi~~~DG~D~e~I~~---------------------Ai~~A 233 (663)
T COG0021 191 I----------------DGDTSLSFTEDVAKRFEAYGWNVIRVIDGHDLEAIDK---------------------AIEEA 233 (663)
T ss_pred e----------------ccCcccccchhHHHHHHhcCCeEEEecCCCCHHHHHH---------------------HHHHH
Confidence 1 1223445677888999999998888888876655543 34456
Q ss_pred HH-hCCCeEEEEe
Q psy14416 325 YL-TKKPGVCLVV 336 (1065)
Q Consensus 325 r~-tgkpgv~~~t 336 (1065)
+. +.||.+++|.
T Consensus 234 k~~~dkPtlI~~k 246 (663)
T COG0021 234 KASTDKPTLIIVK 246 (663)
T ss_pred HhcCCCCeEEEEE
Confidence 66 7799999985
No 291
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=95.68 E-value=0.043 Score=66.27 Aligned_cols=93 Identities=22% Similarity=0.282 Sum_probs=65.7
Q ss_pred EEeccccccCcch-hhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHH
Q psy14416 931 IVNNNGIYGGFDE-TTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMA 1009 (1065)
Q Consensus 931 ~~~gd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1065)
+++|||.+ |-.. .|..++ .-+++|.=.|++.++|.| .++ |. ++..-+-|..+=-+
T Consensus 153 vl~GDGcl-mEGvs~EA~sl----AG~l~L~kLIvlyD~N~I--siD----------G~-------~~~~f~ed~~~Rfe 208 (663)
T COG0021 153 VLVGDGCL-MEGVSHEAASL----AGHLKLGKLIVLYDSNDI--SID----------GD-------TSLSFTEDVAKRFE 208 (663)
T ss_pred EEecCchH-hcccHHHHHHH----HhhcCCCcEEEEEeCCCc--eec----------cC-------cccccchhHHHHHH
Confidence 89999999 3332 233333 356788877777777775 111 22 22223456677778
Q ss_pred HcCCCeEeeCC---HHHHHHHHHHHHhcCCCCEEEEEEeCC
Q psy14416 1010 VFGHDGYLCTT---VPQIKQAMKKCLQTTTRPSLINILINP 1047 (1065)
Q Consensus 1010 ~~g~~~~~~~~---~~~l~~~~~~~~~~~~~~~li~~~~~~ 1047 (1065)
+||....++.+ .++|.+|++++.+.+++|++|+++|--
T Consensus 209 AyGW~vi~~~DG~D~e~I~~Ai~~Ak~~~dkPtlI~~kTiI 249 (663)
T COG0021 209 AYGWNVIRVIDGHDLEAIDKAIEEAKASTDKPTLIIVKTII 249 (663)
T ss_pred hcCCeEEEecCCCCHHHHHHHHHHHHhcCCCCeEEEEEeee
Confidence 99999996655 899999999999876899999999843
No 292
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=95.66 E-value=0.032 Score=64.76 Aligned_cols=87 Identities=25% Similarity=0.181 Sum_probs=50.4
Q ss_pred EEeccccccC--cc-hhhHHHhhccCccccCCCEEEEEEcCCcccCC-CchhhHhHHhhcCCcccCCCCCCCCCCccHHH
Q psy14416 931 IVNNNGIYGG--FD-ETTYASIVESGEVTTVLPVILVIVNNNGIYGG-FDEATYASIVESGEVTTVSPPTSLGPSLRYEK 1006 (1065)
Q Consensus 931 ~~~gd~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1065)
++.|||+..+ |+ ..+++ ...++|++.||.|| + |.. .+.. ......+|.+
T Consensus 165 ~~~GDGa~~eG~~~Ealn~A-------~~~~lPvvfvveNN-~-~aist~~~------------------~~~~~~~~~~ 217 (362)
T PLN02269 165 ALYGDGAANQGQLFEALNIA-------ALWDLPVIFVCENN-H-YGMGTAEW------------------RAAKSPAYYK 217 (362)
T ss_pred EEECCCCcccCHHHHHHHHh-------hccCcCEEEEEeCC-C-EeccCchh------------------hhccchHHHH
Confidence 9999999731 11 22344 34789977777776 4 221 1110 0011223432
Q ss_pred HHHHcCCCeEeeC--CHHHHHHHHHHHHh---cCCCCEEEEEEeCC
Q psy14416 1007 MMAVFGHDGYLCT--TVPQIKQAMKKCLQ---TTTRPSLINILINP 1047 (1065)
Q Consensus 1007 ~~~~~g~~~~~~~--~~~~l~~~~~~~~~---~~~~~~li~~~~~~ 1047 (1065)
.++++.+++|. ++.++.++++++.. . .+|+|||+.+-+
T Consensus 218 --~~~~~p~~~VDG~D~~av~~a~~~A~~~aR~-~gP~lIe~~tyR 260 (362)
T PLN02269 218 --RGDYVPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYR 260 (362)
T ss_pred --hhcCCCeEEECCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCc
Confidence 34567677664 55677777776653 4 789999998844
No 293
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=95.57 E-value=0.057 Score=57.34 Aligned_cols=133 Identities=17% Similarity=0.157 Sum_probs=85.1
Q ss_pred ccceee-ecceEEEEeccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccce
Q psy14416 850 SGEVTT-VLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVI 928 (1065)
Q Consensus 850 ~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 928 (1065)
.+++.. ..|.+-+.-|++|-+++.+. +-+++.+... .+..|+
T Consensus 103 ~~Hp~~~~~pgve~stGSLGqGLsvav--GmAlg~kl~~----~~~~Vy------------------------------- 145 (243)
T COG3959 103 PGHPERNKTPGVEVSTGSLGQGLSVAV--GMALGAKLKG----SPYRVY------------------------------- 145 (243)
T ss_pred CCCCccCCCCceeecCCcccccchHHH--HHHHHHhhcC----CCceEE-------------------------------
Confidence 355555 66677777888887777665 4333332222 567888
Q ss_pred EEEEeccccccCcc-hh-hHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHH
Q psy14416 929 LVIVNNNGIYGGFD-ET-TYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEK 1006 (1065)
Q Consensus 929 ~~~~~gd~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1065)
++.|||=.. -. .. ...++ .+++|.=.|.+++-|++ .++ |..+. ..+.-+.++
T Consensus 146 --vilGDGEl~-EG~~WEAam~A-----ah~~L~NLiaivD~N~~--Qld----------G~t~~------i~~~~pL~~ 199 (243)
T COG3959 146 --VILGDGELD-EGQVWEAAMTA-----AHYKLDNLIAIVDRNKL--QLD----------GETEE------IMPKEPLAD 199 (243)
T ss_pred --EEecCcccc-cccHHHHHHHH-----HHhccCcEEEEEecCCc--ccC----------Cchhh------ccCcchhHH
Confidence 999999872 11 11 23344 77888744444444442 111 22111 123445677
Q ss_pred HHHHcCCCeEeeC--CHHHHHHHHHHHHhcCCCCEEEEEEe
Q psy14416 1007 MMAVFGHDGYLCT--TVPQIKQAMKKCLQTTTRPSLINILI 1045 (1065)
Q Consensus 1007 ~~~~~g~~~~~~~--~~~~l~~~~~~~~~~~~~~~li~~~~ 1045 (1065)
.=++||.+-..|. +.+||.+|++++.+..++|.+|=..+
T Consensus 200 k~eAFGw~V~evdG~d~~~i~~a~~~~~~~~~rP~~IIa~T 240 (243)
T COG3959 200 KWEAFGWEVIEVDGHDIEEIVEALEKAKGSKGRPTVIIAKT 240 (243)
T ss_pred HHHhcCceEEEEcCcCHHHHHHHHHhhhccCCCCeEEEEec
Confidence 7799999999996 68999999999988646999886655
No 294
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=95.51 E-value=0.07 Score=67.94 Aligned_cols=62 Identities=19% Similarity=0.228 Sum_probs=51.1
Q ss_pred ccCCCcchhHHHHHHhhhc-------ccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCe
Q psy14416 177 FGTMGVGLGFALAAALYCN-------HYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNG 238 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~-------~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~g 238 (1065)
-||||.|++.|++.++... ....+++|+||+|||.++=- -+.+..+.+++|.-+++|+|.+.
T Consensus 194 tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~ 264 (891)
T PRK09405 194 TVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNL 264 (891)
T ss_pred ccccchhHHHHHHHHHhCccccccccccCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence 4899999999999998754 12347999999999997753 56677899999999999998773
No 295
>PRK05261 putative phosphoketolase; Provisional
Probab=95.32 E-value=0.21 Score=62.99 Aligned_cols=100 Identities=21% Similarity=0.166 Sum_probs=61.2
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccH-HHHHHhhh----cCCCEEEEEEcCCeeeeccccchhhhh
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSG-MELETLVR----YRLPVILVIVNNNGIYGGFDEATYAWL 251 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~-~eL~t~vr----~~lpivivV~NN~gy~~g~~~~~~~~~ 251 (1065)
-|++|++++.|+|+++. .|+..++|++|||++.=.. ...|.+.+ +++.-++.|+.++|| .++
T Consensus 141 ~G~LG~gls~A~G~Al~----~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~Ng~--~Is------- 207 (785)
T PRK05261 141 GGELGYSLSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGY--KIA------- 207 (785)
T ss_pred CCchhhHHHHHHHHHHc----CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEecCC--cCC-------
Confidence 58999999999999987 7999999999999933221 11122111 223333333333455 111
Q ss_pred hhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHH
Q psy14416 252 DIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMA 299 (1065)
Q Consensus 252 ~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~a 299 (1065)
+. .......-+-+.+.++..|.+.++. -|.....+..+
T Consensus 208 ------~p---t~~~~~~~e~l~~rf~g~Gw~~i~V-DG~D~~av~~a 245 (785)
T PRK05261 208 ------NP---TILARISDEELEALFRGYGYEPYFV-EGDDPADMHQE 245 (785)
T ss_pred ------CC---ccccccCcHhHHHHHHHCCCeeEEE-CCCCHHHHHHH
Confidence 11 0111223457889999999999974 78766555444
No 296
>PF02552 CO_dh: CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit; InterPro: IPR003704 Carbon monoxide dehydrogenase (Cdh) from Methanosarcina mazei (Methanosarcina frisia) Go1 is a Ni2+-, Fe2+-, and S2-containing alpha2beta2 heterotetramer []. The CO dehydrogenase enzyme complex from Methanosarcina thermophila contains a corrinoid/iron-sulphur enzyme composed of two subunits (delta and gamma) []. This family consists of carbon monoxide dehydrogenase I/II beta subunit 1.2.99.2 from EC and CO dehydrogenase (acetyl-CoA synthase epsilon subunit).; GO: 0019385 methanogenesis, from acetate; PDB: 3CF4_G 1YTL_B.
Probab=95.20 E-value=0.049 Score=56.07 Aligned_cols=105 Identities=24% Similarity=0.347 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecC-CCCCCCCCCCcccccH-HHHhhh---------
Q psy14416 488 ELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTP-MGKGVVPDAHPNCVSA-ARTHAL--------- 556 (1065)
Q Consensus 488 ~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~-~gkg~v~~~hpl~lg~-~~~~al--------- 556 (1065)
..+.++.+|.+||||++++|....+....+.........++|+++|. ..++. ++..|-+ +. .....+
T Consensus 23 ~~~~aa~~i~kAKrPllvvGp~vl~~~~~~~~~k~~~~~~i~~~at~~~~~~~-~d~~~ky-~~~~~~~~l~~p~w~g~~ 100 (167)
T PF02552_consen 23 PPEVAAKMIKKAKRPLLVVGPLVLWDWNEEAIEKAIAKKNIPIAATGFNIIGM-PDYRPKY-PKIEPENELNDPHWNGTD 100 (167)
T ss_dssp HSHHHHHHHHHSSSEEEEE-STT--HHHHHHHHHHHHCCTSEEEEETCCHCCH-CSSGCCE--HHHHHHHCCSTT--TTT
T ss_pred hHHHHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHcCcceeecccccccc-ccccccc-ccccHHHhcCCCCCCccc
Confidence 34778899999999999999998765545667777778899999987 34443 3333332 21 111111
Q ss_pred --cCCCEEEEeCCcccccc-ccCCCccccCCCeEEEecCCh
Q psy14416 557 --QNADLVLLLGARLNWIL-HFGRAPRFKSNVKIIQVDLNA 594 (1065)
Q Consensus 557 --~~aDlVI~iG~~~~~~~-~~g~~~~~~~~~~iI~Vd~d~ 594 (1065)
.+.|++|.+|..+-.-+ ...-++.+.+..+.+.++...
T Consensus 101 g~g~~Dl~iFiGv~~yya~~~Ls~LK~ftp~~~t~~~~~~y 141 (167)
T PF02552_consen 101 GHGNYDLVIFIGVHCYYANQVLSILKHFTPCLKTISCDRYY 141 (167)
T ss_dssp SS---SEEEEES--HHHHHHHHHHHHHH-TT-EEEE-SSS-
T ss_pred cCCcccEEEEecchHHHHHHHHHHHhccCCceEEEEecccc
Confidence 36899999998764211 111223344555666665543
No 297
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=95.20 E-value=0.072 Score=66.31 Aligned_cols=46 Identities=9% Similarity=0.162 Sum_probs=35.5
Q ss_pred HHHcCCCeEee---CCHHHHHHHHHHHHhcC-CCCEEEEEEeCCCCCCCc
Q psy14416 1008 MAVFGHDGYLC---TTVPQIKQAMKKCLQTT-TRPSLINILINPSADRKP 1053 (1065)
Q Consensus 1008 ~~~~g~~~~~~---~~~~~l~~~~~~~~~~~-~~~~li~~~~~~~~~~~~ 1053 (1065)
=+.+|.+|+-. ++.++|.++|+++.+.. ++|+||-|.|....+.+.
T Consensus 322 Fe~lG~~Y~GpvDGHdi~~Li~~l~~~k~~~~~~PvlvHv~T~KGkd~~t 371 (701)
T PLN02225 322 FEELGLYYIGPVDGHNIEDLVCVLREVSSLDSMGPVLVHVITEENRDAET 371 (701)
T ss_pred HHHcCCeEECccCCCCHHHHHHHHHHHHcCCCCCCEEEEEEecCCCCCCC
Confidence 36788888754 57889999999887651 399999999987766443
No 298
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=95.00 E-value=0.092 Score=56.79 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=23.6
Q ss_pred CccHHHHHHHcCCCeEeeC--CHHHHHHHHHHHHh
Q psy14416 1001 SLRYEKMMAVFGHDGYLCT--TVPQIKQAMKKCLQ 1033 (1065)
Q Consensus 1001 ~~~~~~~~~~~g~~~~~~~--~~~~l~~~~~~~~~ 1033 (1065)
.-+..+.+++||.+.+.|+ +.+++.++++++++
T Consensus 137 ~e~l~~~~~~yG~~~~~VDG~D~~av~~~~a~a~~ 171 (227)
T cd02011 137 HEELEALFRGYGYEPYFVEGDDPETMHQAMAATLD 171 (227)
T ss_pred chhHHHHHHhCCCceEEECCCCHHHHHHHHHHHHH
Confidence 4568899999999999886 45566555555443
No 299
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=94.90 E-value=0.11 Score=64.59 Aligned_cols=49 Identities=10% Similarity=0.179 Sum_probs=38.7
Q ss_pred HHHHHHHcCCCeE-ee--CCHHHHHHHHHHHHhcC-CCCEEEEEEeCCCCCCC
Q psy14416 1004 YEKMMAVFGHDGY-LC--TTVPQIKQAMKKCLQTT-TRPSLINILINPSADRK 1052 (1065)
Q Consensus 1004 ~~~~~~~~g~~~~-~~--~~~~~l~~~~~~~~~~~-~~~~li~~~~~~~~~~~ 1052 (1065)
....-++||.++. .| ++.++|.++|+++.... ++|++|-+.|......+
T Consensus 275 ~~~~fe~fG~~~~g~vDGHd~~~l~~al~~~k~~~~~~P~vI~~~T~KGkGv~ 327 (641)
T PLN02234 275 SSTLFEELGFHYVGPVDGHNIDDLVSILETLKSTKTIGPVLIHVVTEKGRGYP 327 (641)
T ss_pred HHHHHHHcCCEEEeeECCCCHHHHHHHHHHHHhcCCCCCEEEEEEEecCCCcc
Confidence 4677899999998 55 58899999999876542 58999999997766554
No 300
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=94.71 E-value=0.083 Score=67.68 Aligned_cols=91 Identities=16% Similarity=0.270 Sum_probs=56.4
Q ss_pred EEEeccccc-c--Ccc-hhhHHHhhccCccccCCCE---EEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCc
Q psy14416 930 VIVNNNGIY-G--GFD-ETTYASIVESGEVTTVLPV---ILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSL 1002 (1065)
Q Consensus 930 ~~~~gd~~~-~--~~~-~~~~~~~~~~~~~~~~~~~---~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1002 (1065)
|++.|||+| + .++ ..+++.. .++|+ +.||.|| +| +. ++ . +.......
T Consensus 347 v~~~GDgA~agQG~v~EaLNlA~l-------~~lPvGGtIfvveNN-qy-g~---------------tT-~-~~~~~s~~ 400 (929)
T TIGR00239 347 ILIHGDAAFAGQGVVQETLNMSKL-------RGYSVGGTIHIIINN-QI-GF---------------TT-N-PLDARSTP 400 (929)
T ss_pred EEEeccccccCCChHHHHHHHHHh-------cCCCCCCEEEEEEeC-CE-EE---------------EE-c-HHHhcCcc
Confidence 389999998 2 222 3466655 78997 5555555 53 10 11 0 01111233
Q ss_pred cHHHHHHHcCCCeEeeC--CHHHHHHHHHHHHh---cCCCCEEEEEEeC
Q psy14416 1003 RYEKMMAVFGHDGYLCT--TVPQIKQAMKKCLQ---TTTRPSLINILIN 1046 (1065)
Q Consensus 1003 ~~~~~~~~~g~~~~~~~--~~~~l~~~~~~~~~---~~~~~~li~~~~~ 1046 (1065)
.....|++||+.+++|. +++....+++.+++ ...+|+|||+.+-
T Consensus 401 ~~sd~Ak~ygiP~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tY 449 (929)
T TIGR00239 401 YCSDLAKMIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGY 449 (929)
T ss_pred CHHHHheecCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEec
Confidence 46678999999999886 44555555555542 2379999999993
No 301
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=94.67 E-value=0.11 Score=57.73 Aligned_cols=60 Identities=17% Similarity=0.112 Sum_probs=43.3
Q ss_pred cCCCcchhHHHHHHhhhcccCC-----CCeEEEEeCCCCcc--cc-HHHHHHhhhcCCC---EEEEEEcCC
Q psy14416 178 GTMGVGLGFALAAALYCNHYAP-----GKRVVCVQGDSAFG--FS-GMELETLVRYRLP---VILVIVNNN 237 (1065)
Q Consensus 178 gsmG~gl~~AlGaala~~~~~p-----~rrvV~l~GDGsf~--m~-~~eL~t~vr~~lp---ivivV~NN~ 237 (1065)
+.+|...|.|+|+++|.+.... +.-+|++.|||+|- =. -+.|..+.=+++| +++||.||.
T Consensus 113 S~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveNNq 183 (265)
T cd02016 113 SHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQ 183 (265)
T ss_pred cccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCC
Confidence 4578888999999999877652 56779999999973 22 3334445556677 888888885
No 302
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=94.46 E-value=0.32 Score=54.93 Aligned_cols=132 Identities=14% Similarity=0.125 Sum_probs=77.2
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH--------HHHhh
Q psy14416 484 PGIAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------ARTHA 555 (1065)
Q Consensus 484 p~~~~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~--------~~~~a 555 (1065)
.-+++++++++.|.+||||++.-+. ...-++.+.-.+|+|++|+-+=.+. +-+ .-|..++- ...+.
T Consensus 64 ~~deAie~Aa~ILv~aKrPllyg~s-~tscEA~~~gielaE~~gaviD~~a-svc----hGp~~~alqe~g~p~~Tlgev 137 (429)
T COG1029 64 DYDEAIEKAAEILVNAKRPLLYGWS-STSCEAQELGIELAEKLGAVIDSNA-SVC----HGPSVLALQEAGKPTATLGEV 137 (429)
T ss_pred cHHHHHHHHHHHHHhccCceEeccc-cchHHHHHHHHHHHHHhCcEecCCC-ccc----cchHHHHHHhcCCcccchhhh
Confidence 3478999999999999999998654 3334666777899999998653221 111 01222210 11233
Q ss_pred hcCCCEEEEeCCcccccc----------ccCCCc-cccCCCeEEEecCChhhcccccccceEEEcCH---HHHHHHHHHh
Q psy14416 556 LQNADLVLLLGARLNWIL----------HFGRAP-RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDV---RLTVQQLKQM 621 (1065)
Q Consensus 556 l~~aDlVI~iG~~~~~~~----------~~g~~~-~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~---~~~L~~L~~~ 621 (1065)
-.++|+|+..|+.+-... ..|+.. +=..+..+|.||+......+. .+.+++-.+ .+++.+|...
T Consensus 138 KNraDviVyWGtNP~~shPRhmSRYs~f~RG~~~~rGr~dRtvIvVD~RkT~TAkl--ad~~~qi~p~sDyelisAl~~~ 215 (429)
T COG1029 138 KNRADVIVYWGTNPMHSHPRHMSRYSVFPRGFFRPRGREDRTVIVVDPRKTATAKL--ADNHVQIKPNSDYELISALRAA 215 (429)
T ss_pred cccccEEEEeCCCcccccchhhhhcccccccccccCCcccceEEEEecCcCchhhh--hhheEecCCCCcHHHHHHHHHH
Confidence 458999999998864211 112221 112356788888876533322 233333222 4667777776
Q ss_pred hc
Q psy14416 622 LS 623 (1065)
Q Consensus 622 l~ 623 (1065)
+.
T Consensus 216 l~ 217 (429)
T COG1029 216 LH 217 (429)
T ss_pred hc
Confidence 65
No 303
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=94.35 E-value=0.17 Score=66.53 Aligned_cols=103 Identities=19% Similarity=0.225 Sum_probs=76.0
Q ss_pred cccccHHHHHHHHHHh-------CCC---cEEEEeCCCChHHHHHHHHh-------CCCeEEEecChhhHHHHHHHHHH-
Q psy14416 6 DEELSANQVIAQALKF-------QGI---EYVFGIVGIPVIELAMACQQ-------EGIHYIGMRNEQAACYAAQAIGY- 67 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~-------~GV---~~vFgvpG~~~~~l~~al~~-------~~i~~v~~rhE~~A~~mA~gyar- 67 (1065)
..-+++.|+|++.+-+ .|+ ..+-|.||++...+.+.|.+ .+|.+-...||..|+-+|.|-++
T Consensus 17 ~~~l~GneAivr~~l~q~~~d~~aG~~ta~~vsgYpGsP~~~i~~~l~~~~~~l~~~~i~~e~~~NEkvA~e~a~Gaq~~ 96 (1159)
T PRK13030 17 RIFLTGTQALVRLLLMQRRRDRARGLNTAGFVSGYRGSPLGGVDQALWKAKKLLDASDIRFLPGINEELAATAVLGTQQV 96 (1159)
T ss_pred CEeeeHHHHHHHHHHHhhhHHHhcCCCccceEEEeCCCCHHHHHHHHHHhhhhhcccceEEeecCCHHHHHHHHHHhccc
Confidence 3458999999999999 999 99999999999999999853 24899999999999999999763
Q ss_pred -------hcCCcEEEEEeCCcchhhhhHHHhhcccCCC----cEEEEecCCCC
Q psy14416 68 -------LTKKPGVCLVVSGPGLLHTFGGMANAQINCW----PMLVIGGSCAQ 109 (1065)
Q Consensus 68 -------~tg~~gv~~~t~GPG~~N~l~gla~A~~~~~----Pll~Isg~~~~ 109 (1065)
..|..+++. .-+||.==+.-+|..+-..++ -||+|+|+=|.
T Consensus 97 ~~~~~~~~~Gv~~l~~-~K~~GvnvaaD~l~~~n~~G~~~~GG~v~v~gDDpg 148 (1159)
T PRK13030 97 EADPERTVDGVFAMWY-GKGPGVDRAGDALKHGNAYGSSPHGGVLVVAGDDHG 148 (1159)
T ss_pred cccCCccccceEEEEe-cCcCCcccchhHHHHHHhhcCCCCCcEEEEEecCCC
Confidence 344444443 467885444444443333333 67778776543
No 304
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=93.80 E-value=0.26 Score=61.72 Aligned_cols=46 Identities=13% Similarity=0.204 Sum_probs=36.3
Q ss_pred HHHHcCCCeEe-e--CCHHHHHHHHHHHHhcC-CCCEEEEEEeCCCCCCC
Q psy14416 1007 MMAVFGHDGYL-C--TTVPQIKQAMKKCLQTT-TRPSLINILINPSADRK 1052 (1065)
Q Consensus 1007 ~~~~~g~~~~~-~--~~~~~l~~~~~~~~~~~-~~~~li~~~~~~~~~~~ 1052 (1065)
+-+.||.+|+- | ++.++|.++|+++.... ++|++|-|.|.+....+
T Consensus 277 ~fe~~G~~y~g~iDGHd~~~L~~al~~~k~~~~~~P~vihv~T~KGkG~~ 326 (677)
T PLN02582 277 LFEELGLYYIGPVDGHNIDDLVTILREVKSTKTTGPVLIHVVTEKGRGYP 326 (677)
T ss_pred hHHHcCCeEEeeeCCCCHHHHHHHHHHHHhcCCCCCEEEEEEecCCCCCC
Confidence 45789999873 3 58899999999887642 59999999997766554
No 305
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=93.70 E-value=0.2 Score=64.47 Aligned_cols=92 Identities=15% Similarity=0.243 Sum_probs=58.2
Q ss_pred EEEeccccc-c--Ccch-hhHHHhhccCccccCCC---EEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCc
Q psy14416 930 VIVNNNGIY-G--GFDE-TTYASIVESGEVTTVLP---VILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSL 1002 (1065)
Q Consensus 930 ~~~~gd~~~-~--~~~~-~~~~~~~~~~~~~~~~~---~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1002 (1065)
|++.|||+| + .+++ .+++.. .++| ++.||.|| +| +. ++ ++ .......
T Consensus 346 v~~~GDgA~agqG~v~EalNlA~l-------~~lp~ggvIfvveNN-q~-g~---------------tT-~~-~~~~s~~ 399 (924)
T PRK09404 346 ILIHGDAAFAGQGVVAETLNLSQL-------RGYRTGGTIHIVINN-QI-GF---------------TT-SP-PDDRSTP 399 (924)
T ss_pred EEEecCccccCCChHHHHHHHHHh-------cCCCCCCEEEEEEeC-CE-EE---------------ee-CH-HHhccch
Confidence 389999998 3 3332 366655 5666 88888888 42 11 00 00 0011233
Q ss_pred cHHHHHHHcCCCeEeeC--CHHHHHHHHHHHHh---cCCCCEEEEEEeCC
Q psy14416 1003 RYEKMMAVFGHDGYLCT--TVPQIKQAMKKCLQ---TTTRPSLINILINP 1047 (1065)
Q Consensus 1003 ~~~~~~~~~g~~~~~~~--~~~~l~~~~~~~~~---~~~~~~li~~~~~~ 1047 (1065)
.....|++||+.+++|. +++....+++.+++ ...+|+|||+.+-+
T Consensus 400 ~~sd~Ak~~giP~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR 449 (924)
T PRK09404 400 YCTDVAKMVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYR 449 (924)
T ss_pred hHHHHHeecCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEec
Confidence 45789999999999875 55566666655543 23799999999944
No 306
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=93.70 E-value=0.51 Score=62.92 Aligned_cols=150 Identities=14% Similarity=0.046 Sum_probs=105.5
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHh---hcC------C--ceEEEccCCchHHHHHHHHHHHhCCCeEEE
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMAC---QQE------G--IHYIGMRNEQAACYAAQAIGYLTKKPGVCL 334 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al---~~~------~--i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~ 334 (1065)
.+++.++++..-.+ |++.+|+.|=++.+++.+.+ ... | .+++..-+|.+|..|+.|.+ .+|.. +..
T Consensus 3 ~~~GNeAvA~~A~~-~~~~~~~YPITPss~i~e~l~~~~~~g~~n~~G~~~~~vq~EsE~~A~~av~GA~-~aGar-a~T 79 (1165)
T TIGR02176 3 TMDGNTAAAHVAYA-FSEVAAIYPITPSSTMGEYVDDWAAQGRKNIFGQTVKVVEMQSEAGAAGAVHGAL-QTGAL-TTT 79 (1165)
T ss_pred eeeHHHHHHHHHHH-hCCEEEEECCCCCcHHHHHHHHHHHhCCcccCCCCceEEEccchHHHHHHHHhHh-hcCCC-EEE
Confidence 46788888888777 99999999977777776655 221 1 27999999999999999954 45643 456
Q ss_pred EeccccccccccccccccccCcceEeecCCCccCCCC---CCCCCccChhhhhcccccE-EeeCCChhhHHHHHHHHHHH
Q psy14416 335 VVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEG---IGGFQECPQVELARPYCKY-SARPPNIHLIGQHVEKAVRL 410 (1065)
Q Consensus 335 ~tsGpG~~N~~~av~eA~~~~vPLlvItg~~p~~~~g---~ga~Q~idQ~~l~~~~~k~-s~~l~~~~~i~~~i~~A~~~ 410 (1065)
.|||+|++=+.+.+..+.-.++|+|+..+.|.....+ .++++++.+. | -+-| .....++.++....-.|+..
T Consensus 80 ~TSs~GL~LM~e~l~~~ag~~~P~Vi~va~R~~~~~~~~i~~dh~Dv~~~---R-~~G~ivl~s~svQEa~D~al~A~~l 155 (1165)
T TIGR02176 80 FTASQGLLLMIPNMYKIAGELLPCVFHVSARAIAAHALSIFGDHQDVMAA---R-QTGFAMLASSSVQEVMDLALVAHLA 155 (1165)
T ss_pred ecChhHHHHHHHHHHHHHhccCCEEEEEecCCCCCCCCccCCCchHHHHh---h-cCCeEEEeCCCHHHHHHHHHHHHHH
Confidence 7999999999999987777799999999998765433 2233333211 1 1223 22345677778888888888
Q ss_pred hhcCCCCEEEEec
Q psy14416 411 STFGKPGVSYLDF 423 (1065)
Q Consensus 411 A~~~~~GPV~L~i 423 (1065)
|...+ -||.+.+
T Consensus 156 Ae~~~-~Pvi~~~ 167 (1165)
T TIGR02176 156 TIEAR-VPFMHFF 167 (1165)
T ss_pred HHhcC-CCEEEEe
Confidence 86544 3554443
No 307
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=93.31 E-value=0.28 Score=64.44 Aligned_cols=102 Identities=20% Similarity=0.177 Sum_probs=74.4
Q ss_pred ccccHHHHHHHHHHh-------CCC---cEEEEeCCCChHHHHHHHHh-------CCCeEEEecChhhHHHHHHHH----
Q psy14416 7 EELSANQVIAQALKF-------QGI---EYVFGIVGIPVIELAMACQQ-------EGIHYIGMRNEQAACYAAQAI---- 65 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~-------~GV---~~vFgvpG~~~~~l~~al~~-------~~i~~v~~rhE~~A~~mA~gy---- 65 (1065)
.-+++.|+|++.+-+ .|+ ..+-|.||++...+.+.|.+ .+|.+-...||..|+-+|-|-
T Consensus 26 ~~l~G~qAivR~~l~q~~~D~~aG~~ta~~vsGYpGsP~~~id~~l~~~~~~l~~~~i~fe~~~NEkvAae~~~GsQ~~~ 105 (1165)
T PRK09193 26 VFLTGTQALVRLPLLQRERDRAAGLNTAGFVSGYRGSPLGGLDQELWRAKKHLAAHDIVFQPGLNEDLAATAVWGSQQVN 105 (1165)
T ss_pred eeeeHHHHHHHHHHHHhhHHHhcCCCccceEEeeCCCCHHHHHHHHHHhhhhhcccceEEeeccCHHHHHHHHhhhcccc
Confidence 458999999999887 999 99999999999999988853 349999999999999999554
Q ss_pred ----HHhcCCcEEEEEeCCcchhhhhHHHhhcccC----CCcEEEEecCCCC
Q psy14416 66 ----GYLTKKPGVCLVVSGPGLLHTFGGMANAQIN----CWPMLVIGGSCAQ 109 (1065)
Q Consensus 66 ----ar~tg~~gv~~~t~GPG~~N~l~gla~A~~~----~~Pll~Isg~~~~ 109 (1065)
++..|..+++. .-|||.==+.-++..|-.. +=-||+++|+=+.
T Consensus 106 ~~~~a~~~Gv~~l~y-~K~pGvn~aaD~l~~~n~~G~~~~GGvv~v~gDDpg 156 (1165)
T PRK09193 106 LFPGAKYDGVFGMWY-GKGPGVDRSGDVFRHANAAGTSPHGGVLALAGDDHA 156 (1165)
T ss_pred cccceeeccceEEEe-cCcCCccccHhHHHHHHhhcCCCCCcEEEEEecCCC
Confidence 34456555554 4678853333444333222 3367888876554
No 308
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=92.68 E-value=0.37 Score=55.57 Aligned_cols=42 Identities=17% Similarity=0.205 Sum_probs=38.3
Q ss_pred CCCCeEEEEeCCC-CccccHHHHHHhhhcCCCEEEEEEcCCee
Q psy14416 198 APGKRVVCVQGDS-AFGFSGMELETLVRYRLPVILVIVNNNGI 239 (1065)
Q Consensus 198 ~p~rrvV~l~GDG-sf~m~~~eL~t~vr~~lpivivV~NN~gy 239 (1065)
-|.+.||++.||| ++-...+.|.-+.+.|.++++||+||..|
T Consensus 149 l~~~~v~v~gGDG~~ydIG~~~l~ha~~r~~ni~~iv~DNe~Y 191 (365)
T cd03377 149 LVKKSVWIIGGDGWAYDIGYGGLDHVLASGENVNILVLDTEVY 191 (365)
T ss_pred ccccceEEEecchhhhccchhhHHHHHHcCCCeEEEEECCccc
Confidence 3668999999999 57788999999999999999999999988
No 309
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=92.56 E-value=0.56 Score=61.58 Aligned_cols=91 Identities=14% Similarity=0.144 Sum_probs=66.5
Q ss_pred cCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc-HHHHHHhhhcCCCEEEEEEcCCeeeeccccchhhhhhhhhc
Q psy14416 178 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS-GMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKK 256 (1065)
Q Consensus 178 gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~-~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~~~~l~~~ 256 (1065)
-+||.+.+..+|.+-. ..+++|+..+|||-|.=+ +..|-.++..+.+++++|+.|+ .-.|.=
T Consensus 495 ~~MGgeg~~~~G~a~f----~~~~hv~aniGDgTffHSG~~alr~AV~~~~nit~kIL~N~--avAMTG----------- 557 (1186)
T PRK13029 495 SQMGGEGVAWIGQMPF----SRRRHVFQNLGDGTYFHSGLLAIRQAIAAGVNITYKILYND--AVAMTG----------- 557 (1186)
T ss_pred eccCcchhhheeeccc----CCCCCEEEEeccccchhcCHHHHHHHHhcCCCEEEEEEeCc--chhccC-----------
Confidence 4566555555555544 467899999999998766 8889999999999999999999 545521
Q ss_pred cCCCcccccCccHHHHHHHHHHhcCceEEEeec
Q psy14416 257 SNMSEDYDEELSANQVIAQALKFQGIEYVFGIV 289 (1065)
Q Consensus 257 ~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~p 289 (1065)
+=+... .+ ..+.|++.|+..||++|..+-
T Consensus 558 -gQp~~G--~~-~v~~i~~~~~a~GV~~v~vv~ 586 (1186)
T PRK13029 558 -GQPVDG--VL-TVPQIARQVHAEGVRRIVVVT 586 (1186)
T ss_pred -CCCCCC--cC-CHHHHHHHHHhCCccEEEEeC
Confidence 111111 22 356788899999999998876
No 310
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=92.21 E-value=0.14 Score=56.06 Aligned_cols=67 Identities=19% Similarity=0.209 Sum_probs=46.8
Q ss_pred HHhhhcCCCEEEEeCCccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHH
Q psy14416 552 RTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQL 618 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L 618 (1065)
....+++||++|++|+++.-.....+........+++.|+.++...+.....++.+.+++.++|..|
T Consensus 169 ~~~~~~~aDlllvvGTSl~V~pa~~l~~~~~~~~~~v~iN~~~~~~~~~~~~d~~~~~~~~~~l~~~ 235 (235)
T cd01408 169 MEEDKEEADLLIVIGTSLKVAPFASLPSRVPSEVPRVLINREPVGHLGKRPFDVALLGDCDDGVREL 235 (235)
T ss_pred HHHHHhcCCEEEEECCCCeeccHHHHHHHHhCCCcEEEEeCCCCCCCCCCCcCEEEeCCHHHHHHhC
Confidence 3356778999999999976433333322223456788899988765523457899999999999764
No 311
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=92.00 E-value=0.47 Score=60.73 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q psy14416 1020 TVPQIKQAMKKCLQTTTRPSLINILINPSAD 1050 (1065)
Q Consensus 1020 ~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 1050 (1065)
+.++|.+|++++.+..++|++|.+.|-....
T Consensus 362 D~~~i~~A~~~A~~~~~~PTvIla~TvkG~G 392 (889)
T TIGR03186 362 DARKLYAAYDRAVRHEGRPTVILAKTMKGFG 392 (889)
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEEEeeecCC
Confidence 7899999999998766799999999865433
No 312
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=91.91 E-value=1.1 Score=45.69 Aligned_cols=112 Identities=16% Similarity=0.189 Sum_probs=78.9
Q ss_pred eEE-EccCCchHHHHHHHHHHHhCCCeEEEEeccccccccccccc-cccccCcceEeecCCCccCC-CCCCCCCccChhh
Q psy14416 306 HYI-GMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMA-NAQINCWPMLVIGGSCAQDH-EGIGGFQECPQVE 382 (1065)
Q Consensus 306 ~~i-~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~-eA~~~~vPLlvItg~~p~~~-~g~ga~Q~idQ~~ 382 (1065)
|++ .-..|++.+-+|.|.|.. |. .+++.+...-..-++..+. ++-..+.|++++........ .+-..+|.+++..
T Consensus 40 r~i~~gIaE~~~vg~A~GlA~~-G~-~pi~~~~~~f~~ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a 117 (156)
T cd07033 40 RFIDVGIAEQNMVGIAAGLALH-GL-KPFVSTFSFFLQRAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIA 117 (156)
T ss_pred CeEEeChhHHHHHHHHHHHHHC-CC-eEEEEECHHHHHHHHHHHHHHHhccCCCeEEEEECCcEecCCCCcccchHHHHH
Confidence 555 568899999999999965 54 3333444444555566666 77788999999987554443 2334567888899
Q ss_pred hhcccccEE-eeCCChhhHHHHHHHHHHHhhcCCCCEEEEecC
Q psy14416 383 LARPYCKYS-ARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424 (1065)
Q Consensus 383 l~~~~~k~s-~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP 424 (1065)
+++.+-... +...+++++...++.|++. ++|++|-+|
T Consensus 118 ~~~~iPg~~v~~Ps~~~~~~~ll~~a~~~-----~~P~~irl~ 155 (156)
T cd07033 118 LLRAIPNMTVLRPADANETAAALEAALEY-----DGPVYIRLP 155 (156)
T ss_pred HhcCCCCCEEEecCCHHHHHHHHHHHHhC-----CCCEEEEee
Confidence 999887764 4566777777777777643 369999887
No 313
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=91.88 E-value=0.58 Score=60.09 Aligned_cols=31 Identities=10% Similarity=0.130 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q psy14416 1020 TVPQIKQAMKKCLQTTTRPSLINILINPSAD 1050 (1065)
Q Consensus 1020 ~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 1050 (1065)
+.+++.+|++++.+..++|++|-+.|-....
T Consensus 376 D~~~i~~A~~~a~~~~~~PtvIla~TvkG~G 406 (896)
T PRK13012 376 DPRKVYAAYAAAVRHKGQPTVILAKTKKGYG 406 (896)
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEEEeeecCC
Confidence 7889999999888665799999999866444
No 314
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=91.84 E-value=0.48 Score=53.88 Aligned_cols=116 Identities=18% Similarity=0.165 Sum_probs=79.8
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCC---CCCCCCCCCcccccHHHHhhhcCCCEEEEeCCccccccc
Q psy14416 498 EAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPM---GKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWILH 574 (1065)
Q Consensus 498 ~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~---gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~~~~ 574 (1065)
+|+ .++-+|+|....+..+.+++||+.+|.-|-+|-- ..|.+|.+ ..+|..... -.|||.|.+|-+=.-...
T Consensus 193 ~A~-vVV~~GrG~~~~e~~~~~~~LA~~LGaavG~SRp~vd~~gW~p~~--~QIGqTGk~--V~P~lYiA~GISGAiQH~ 267 (312)
T PRK11916 193 KAK-RVVGVGRGLAAQDDLKMVHELAAVLNAEVGCSRPIAEGENWMERE--RYIGVSGVL--LKSDLYLTLGISGQIQHM 267 (312)
T ss_pred cCC-EEEECCCCCCChHHHHHHHHHHHHhCCEEEecHHHHccCCCCChh--cEECCCCCC--cCccEEEEeccccHHHHH
Confidence 443 3444555666556689999999999999887743 12455543 345644432 278999999976444344
Q ss_pred cCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 575 FGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 575 ~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
.|. .....+|-||.|+.. --+...|..|++|..+++.+|.+.++
T Consensus 268 aGm----~~s~~IVAIN~Dp~A-PIF~~ADygiVgD~~~vlP~L~e~l~ 311 (312)
T PRK11916 268 VGG----NGAKVIVAINKDKNA-PIFNYADYGLVGDIYKVVPALISQLS 311 (312)
T ss_pred hhc----ccCCEEEEECCCCCC-CchhhCCeeEeeeHHHHHHHHHHHhh
Confidence 443 234578999999863 22345799999999999999998765
No 315
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=91.77 E-value=0.7 Score=59.74 Aligned_cols=59 Identities=14% Similarity=0.088 Sum_probs=44.1
Q ss_pred CCCcchhHHHHHHhhhcccCCC------CeEEEEeCCCCcc--cc-HHHHHHhhhcCCC---EEEEEEcCC
Q psy14416 179 TMGVGLGFALAAALYCNHYAPG------KRVVCVQGDSAFG--FS-GMELETLVRYRLP---VILVIVNNN 237 (1065)
Q Consensus 179 smG~gl~~AlGaala~~~~~p~------rrvV~l~GDGsf~--m~-~~eL~t~vr~~lp---ivivV~NN~ 237 (1065)
.+|...|.|+|+++|.+....+ .-+|++.|||+|- =. -..|.-+.-+++| +++||.||.
T Consensus 315 hleav~Pva~G~A~A~q~~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq 385 (924)
T PRK09404 315 HLEIVNPVVEGSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQ 385 (924)
T ss_pred ccccccCeehhHHHHHHHhcCCcccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCC
Confidence 3577789999999998776555 5678999999982 22 4455556677887 888888884
No 316
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=91.65 E-value=0.5 Score=53.76 Aligned_cols=113 Identities=12% Similarity=0.101 Sum_probs=78.9
Q ss_pred cEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCC---CCCCCCCCcccccHHHHhhhcCCCEEEEeCCccccccccCCC
Q psy14416 502 PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMG---KGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWILHFGRA 578 (1065)
Q Consensus 502 PvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~g---kg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~~~~~g~~ 578 (1065)
.++-.|+|....+..+.+++||+.+|.-|-+|--. .|.+|. ...+|...... .|||.|.+|-+=.-....|.
T Consensus 197 vVVsgGRG~~~~E~~~l~eeLA~~LGaavg~SRp~vd~~gW~p~--~~QIGqTGk~V--~P~lYiA~GISGaiQH~~Gm- 271 (313)
T PRK03363 197 LVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEH--ERYVGISNLML--KPELYLAVGISGQIQHMVGA- 271 (313)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhCCeEEecHHHHccCCCCCH--HheecCCCCCc--CccEEEEEccccHHHHHhhc-
Confidence 34445556666677889999999999999877432 235553 44566544422 79999999976444334443
Q ss_pred ccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 579 PRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 579 ~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
.....+|-||.|+... -+...|..|++|..+++.+|.++++
T Consensus 272 ---~~s~~IVAIN~Dp~AP-IF~~ADygiVgD~~eilP~L~e~l~ 312 (313)
T PRK03363 272 ---NASQTIFAINKDKNAP-IFQYADYGIVGDAVKILPALTAALA 312 (313)
T ss_pred ---ccCCEEEEEcCCCCCC-chhhCCeeEeeeHHHHHHHHHHHhh
Confidence 2345788899998532 2345799999999999999998775
No 317
>PRK05261 putative phosphoketolase; Provisional
Probab=91.26 E-value=0.86 Score=57.68 Aligned_cols=48 Identities=17% Similarity=0.367 Sum_probs=33.5
Q ss_pred CccHHHHHHHcCCCeEeeC--CHHHHHHH----HHHHHh----------cC---CCCE--EEEEEeCCC
Q psy14416 1001 SLRYEKMMAVFGHDGYLCT--TVPQIKQA----MKKCLQ----------TT---TRPS--LINILINPS 1048 (1065)
Q Consensus 1001 ~~~~~~~~~~~g~~~~~~~--~~~~l~~~----~~~~~~----------~~---~~~~--li~~~~~~~ 1048 (1065)
.-+..+..++||.+.+.|+ +++++.++ ++.|++ .+ ++|+ +|.+.+...
T Consensus 217 ~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~rT~kG 285 (785)
T PRK05261 217 DEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLRTPKG 285 (785)
T ss_pred cHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEECCcc
Confidence 3578899999999999886 55555555 333333 22 5888 999998663
No 318
>KOG0225|consensus
Probab=91.24 E-value=0.34 Score=54.23 Aligned_cols=72 Identities=21% Similarity=0.265 Sum_probs=55.0
Q ss_pred ccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCeeeeccccchhh
Q psy14416 175 GTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNGIYGGFDEATYA 249 (1065)
Q Consensus 175 ~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~ 249 (1065)
++.|..|..+|.+.|+++|++-.+.+.-++.|-|||+..-. -..+--+.=|+||+|.|+=||. | ||-...|+
T Consensus 162 GGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN~-y--GMGTs~~R 235 (394)
T KOG0225|consen 162 GGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVCENNH-Y--GMGTSAER 235 (394)
T ss_pred CccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhHHHHhCCCEEEEEccCC-C--ccCcchhh
Confidence 34677888899999999998877778889999999997654 3344456678999999888884 6 66434443
No 319
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=90.98 E-value=0.76 Score=58.32 Aligned_cols=32 Identities=9% Similarity=0.038 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 1020 TVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 1020 ~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
+.++|.+|++++.+..++|++|-+.|-.....
T Consensus 362 D~~~I~~A~~~A~~~~grPTvIlA~TvKG~G~ 393 (885)
T TIGR00759 362 DPRKVYAAYAAAQEHKGQPTVILAKTIKGYGM 393 (885)
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEEeeeecCCC
Confidence 78999999998887657999999998664443
No 320
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=90.95 E-value=1 Score=52.99 Aligned_cols=133 Identities=13% Similarity=0.183 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcC---CCEE--ecCCCCCCCCCCCccccc------------
Q psy14416 487 AELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFN---LPFL--PTPMGKGVVPDAHPNCVS------------ 549 (1065)
Q Consensus 487 ~~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg---~PV~--tt~~gkg~v~~~hpl~lg------------ 549 (1065)
.+.++++++|..|+|.+|+=|.|..-+++..++++|+|.+. .-|= --|.+ |..|-+-.-.+.
T Consensus 294 ~~~~d~a~~l~~A~~ViIVPGYGmAVAqAQh~v~el~~~L~~~Gv~V~faIHPVA-GRMPGHMNVLLAEA~VPYd~v~eM 372 (462)
T PRK09444 294 TTAEEVAEMLKNSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVA-GRLPGHMNVLLAEAKVPYDIVLEM 372 (462)
T ss_pred cCHHHHHHHHHhCCcEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEecccc-ccCCCcceeEEeecCCCHHHHHhH
Confidence 34567889999999999999999888888888888887763 3221 11211 233322221221
Q ss_pred HHHHhhhcCCCEEEEeCCccc---------cccccCCCc-cccCCCeEEEecCChhhccc--------ccccceEEEcCH
Q psy14416 550 AARTHALQNADLVLLLGARLN---------WILHFGRAP-RFKSNVKIIQVDLNAEELHN--------SVQAAVAIQSDV 611 (1065)
Q Consensus 550 ~~~~~al~~aDlVI~iG~~~~---------~~~~~g~~~-~~~~~~~iI~Vd~d~~~~~~--------~~~~~~~I~~D~ 611 (1065)
...+..+.+.|++|++|+.-. ....+|.+- ...+.++++.+..+- ..+. +..-+.-+.+|+
T Consensus 373 deIN~~F~~tDvalVIGANDvVNPaA~~dp~SpIyGMPvL~v~kAk~Viv~KRs~-~~GyAGv~NpLF~~~nt~MlfGDA 451 (462)
T PRK09444 373 DEINDDFADTDTVLVIGANDTVNPAAQEDPNSPIAGMPVLEVWKAQNVIVFKRSM-NTGYAGVQNPLFFKENTQMLFGDA 451 (462)
T ss_pred HhhccccccCCEEEEecCccCCCcccccCCCCCcCCCceeehhhCCEEEEEeCCC-CCCcCCCCCcceecCCceEEeccH
Confidence 123456779999999997532 112233321 111223444444322 1221 223455588999
Q ss_pred HHHHHHHHHh
Q psy14416 612 RLTVQQLKQM 621 (1065)
Q Consensus 612 ~~~L~~L~~~ 621 (1065)
++.+++|.+.
T Consensus 452 K~~~~~l~~~ 461 (462)
T PRK09444 452 KASVDAILKA 461 (462)
T ss_pred HHHHHHHHHh
Confidence 9999988654
No 321
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=90.86 E-value=0.86 Score=58.72 Aligned_cols=59 Identities=19% Similarity=0.175 Sum_probs=43.9
Q ss_pred CCcchhHHHHHHhhhcccCC------CCeEEEEeCCCCcc-c-c-HHHHHHhhhcCCCE---EEEEEcCCee
Q psy14416 180 MGVGLGFALAAALYCNHYAP------GKRVVCVQGDSAFG-F-S-GMELETLVRYRLPV---ILVIVNNNGI 239 (1065)
Q Consensus 180 mG~gl~~AlGaala~~~~~p------~rrvV~l~GDGsf~-m-~-~~eL~t~vr~~lpi---vivV~NN~gy 239 (1065)
++...|.++|.+.|.+.... +.-+|++.|||+|- - . ...|.-+.-+++|+ ++||.||. |
T Consensus 317 Leav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNq-y 387 (929)
T TIGR00239 317 LEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQ-I 387 (929)
T ss_pred cccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCC-E
Confidence 67778999999999876543 45678999999972 2 1 45566677889997 77788874 5
No 322
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=90.61 E-value=0.59 Score=54.10 Aligned_cols=112 Identities=17% Similarity=0.170 Sum_probs=77.6
Q ss_pred EEE-EccCCCchhHHHHHHHHHhhcCCCEEecCC--CCCCCCCCCcccccHHHHhhhcCCCEEEEeCCccccccccCCCc
Q psy14416 503 LVI-IGKGAAYSQAETELLSFVNSFNLPFLPTPM--GKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWILHFGRAP 579 (1065)
Q Consensus 503 vIl-vG~g~~~~~a~~~L~~LAe~lg~PV~tt~~--gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~~~~~g~~~ 579 (1065)
+|| +|.|....+..+.+++||+.+|.-|-+|-- -.|.+|. ...+|..... -.|||.|.+|-+=.-....|.
T Consensus 239 vVVsgGRGv~~~en~~l~eeLA~~LGaavGaSRp~vD~GW~p~--~~QIGqTGk~--V~P~lYIA~GISGAiQH~~Gm-- 312 (356)
T PLN00022 239 VVVTGGRGLKSAENFKMLEKLADKLGGAVGASRAAVDAGFVPN--DLQVGQTGKI--VAPELYIAVGISGAIQHLAGM-- 312 (356)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHhCCceeccHHHHhCCCCCh--HheeccCCCC--cCCcEEEEEecchHHHHHhhc--
Confidence 555 455665556788999999999998876643 2345543 3345544432 279999999976443334443
Q ss_pred cccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 580 RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 580 ~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
.....||-||.|+.. --+...|..|++|..+++.+|.++++
T Consensus 313 --~~s~~IVAIN~D~~A-PIF~~ADygIVgD~~evlP~Lie~lk 353 (356)
T PLN00022 313 --KDSKVIVAINKDADA-PIFQVADYGLVADLFEAVPELLEKLP 353 (356)
T ss_pred --ccCCEEEEECCCCCC-CchhhcCeeEeeeHHHHHHHHHHHHH
Confidence 234578889999853 22345799999999999999999876
No 323
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=90.59 E-value=0.54 Score=53.23 Aligned_cols=116 Identities=19% Similarity=0.153 Sum_probs=80.7
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCC--CCCCCCCCCcccccHHHHhhhcCCCEEEEeCCcccccccc
Q psy14416 498 EAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPM--GKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWILHF 575 (1065)
Q Consensus 498 ~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~--gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~~~~~ 575 (1065)
+|+ .++-.|.|....+..+.+.+||+.+|.-|-++-. -.|.+|.++ .+|.... .-.|||-|.+|-+=.-....
T Consensus 194 ~A~-iVVsgGRG~gs~enf~~i~~LA~~LGa~VGaSRp~vd~gw~p~d~--QVGqTGk--~V~P~LYIA~GISGAiQHla 268 (313)
T COG2025 194 EAK-IVVSGGRGLGSKENFKLLEELADVLGAAVGASRPAVDAGWMPNDR--QVGQTGK--TVAPKLYIALGISGAIQHLA 268 (313)
T ss_pred cce-EEEEcCcccCChhhhHHHHHHHHHhCceeeccHHHHhcCCCCccc--eecCCCc--EecccEEEEEecccHHHHHh
Confidence 444 3444566666666677899999999999987643 245666544 4564443 23899999999664433333
Q ss_pred CCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 576 GRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 576 g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
|. .....+|-||.|+.. --+...|..|++|..+++.+|.+.++
T Consensus 269 Gm----~~Sk~IVAINkD~nA-PIF~~ADyGiVgDl~~ivP~Lie~l~ 311 (313)
T COG2025 269 GM----KDSKVIVAINKDPNA-PIFQVADYGIVGDLFKIVPALIEALK 311 (313)
T ss_pred hc----ccCcEEEEEcCCCCC-CccccCCeeeeeeHHHHHHHHHHHHh
Confidence 43 234578888888753 33456899999999999999999886
No 324
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=88.03 E-value=0.75 Score=50.71 Aligned_cols=69 Identities=17% Similarity=0.148 Sum_probs=49.7
Q ss_pred HHhhhcCCCEEEEeCCccccccccCCCcc-ccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhh
Q psy14416 552 RTHALQNADLVLLLGARLNWILHFGRAPR-FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQML 622 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~~~~~~g~~~~-~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l 622 (1065)
..+.+.+||++|++|+++.-.....+... .....+++.||.++...+. ..++.+.+++.++|.+|.+.+
T Consensus 172 ~~~~~~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d~--~~~~~i~~~~~~~l~~l~~~~ 241 (244)
T PRK14138 172 AIRLSSKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNLGETPLDD--IATLKYNMDVVEFANRVMSEG 241 (244)
T ss_pred HHHHHhcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcCCCCCCCc--ceeEEEeCCHHHHHHHHHHHh
Confidence 34556799999999999764333332211 1245788889998877664 368999999999999998754
No 325
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=87.99 E-value=2 Score=55.13 Aligned_cols=32 Identities=13% Similarity=0.110 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 1020 TVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 1020 ~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
+.++|.+|++++.+..++|++|-+.|-.....
T Consensus 368 D~~~i~~A~~~A~~~~~~PtvIia~TvkG~G~ 399 (891)
T PRK09405 368 DPRKVYAAYKAAVEHKGQPTVILAKTIKGYGM 399 (891)
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEEeceecCCC
Confidence 78999999998887668999999998665443
No 326
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=87.77 E-value=2.4 Score=50.19 Aligned_cols=113 Identities=14% Similarity=0.127 Sum_probs=65.0
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCccc-cc---HHHHhhhcCC
Q psy14416 484 PGIAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNC-VS---AARTHALQNA 559 (1065)
Q Consensus 484 p~~~~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~-lg---~~~~~al~~a 559 (1065)
.=+++++.+++.|+++++|+++ |.+.........+.+|++.+|..+- .....+..+..+.+. .+ ....+...++
T Consensus 55 sWdeAl~~ia~~L~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~di~~~a 132 (415)
T cd02761 55 SLEEAIEKAAEILKEAKRPLFY-GLGTTVCEAQRAGIELAEKLGAIID-HAASVCHGPNLLALQDSGWPTTTLGEVKNRA 132 (415)
T ss_pred CcHHHHHHHHHHHHhhcCCEEE-EcccchHHHHHHHHHHHHHHCCCcc-ccccccccchHHHHHhCCCccccHHHHHhcC
Confidence 3478899999999999999887 4444433455678899999997442 111111111111110 11 1112222479
Q ss_pred CEEEEeCCccccccccCC------Ccc-----ccCCCeEEEecCChhhcc
Q psy14416 560 DLVLLLGARLNWILHFGR------APR-----FKSNVKIIQVDLNAEELH 598 (1065)
Q Consensus 560 DlVI~iG~~~~~~~~~g~------~~~-----~~~~~~iI~Vd~d~~~~~ 598 (1065)
|+||.+|+.+.......+ .+. ..+..+++.||+......
T Consensus 133 d~il~~G~n~~~~~p~~~~~~~~~~~~~~~~~~~~g~kli~idp~~t~ta 182 (415)
T cd02761 133 DVIVYWGTNPMHAHPRHMSRYSVFPRGFFREGGREDRTLIVVDPRKSDTA 182 (415)
T ss_pred CEEEEEcCCccccccHHhhhhhhhhhhhccccCCCCCEEEEEcCCCcchh
Confidence 999999988754321111 000 124568999998775543
No 327
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=86.73 E-value=4.1 Score=41.98 Aligned_cols=112 Identities=15% Similarity=0.049 Sum_probs=72.3
Q ss_pred EE-EccCCchHHHHHHHHHHHhCCCeEEEEecccccccccccccccccc-CcceEeecCCCccCCCCCCC-CCccChhhh
Q psy14416 307 YI-GMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQIN-CWPMLVIGGSCAQDHEGIGG-FQECPQVEL 383 (1065)
Q Consensus 307 ~i-~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~eA~~~-~vPLlvItg~~p~~~~g~ga-~Q~idQ~~l 383 (1065)
++ .-..|++..-+|.|+|....+|.+ .+..+-+.-....+..+-.. ++|+|+.... ....-+.|. +|..++..+
T Consensus 51 ~~~~gIaE~~~vg~a~GlA~~G~~pi~--~~~~~f~~~a~~~~~~~~~~~~~~~v~~~~~-g~~~g~~G~tH~~~~~~~~ 127 (168)
T smart00861 51 VIDTGIAEQAMVGFAAGLALAGLRPVV--AIFFTFFDRAKDQIRSDGAMGRVPVVVRHDS-GGGVGEDGPTHHSQEDEAL 127 (168)
T ss_pred EEEcCcCHHHHHHHHHHHHHcCCCcEE--EeeHHHHHHHHHHHHHhCcccCCCEEEEecC-ccccCCCCccccchhHHHH
Confidence 55 678999999999999987554443 44444444444444443333 4666554422 122222243 888999999
Q ss_pred hcccccEE-eeCCChhhHHHHHHHHHHHhhcCCCCEEEEecCh
Q psy14416 384 ARPYCKYS-ARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPA 425 (1065)
Q Consensus 384 ~~~~~k~s-~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~ 425 (1065)
++.+.... +...+++++...++.++. ...||++|-++.
T Consensus 128 ~~~iP~~~v~~P~~~~e~~~~l~~a~~----~~~~p~~i~~~~ 166 (168)
T smart00861 128 LRAIPGLKVVAPSDPAEAKGLLRAAIR----RDDGPPVIRLER 166 (168)
T ss_pred HhcCCCcEEEecCCHHHHHHHHHHHHh----CCCCCEEEEecC
Confidence 99887654 567788888888887773 335899998873
No 328
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=86.65 E-value=1.4 Score=46.05 Aligned_cols=118 Identities=16% Similarity=0.111 Sum_probs=73.4
Q ss_pred eEE-EccCCchHHHHHHHHHHHhC-CCeEEEEecccccc----ccccccc-cccccCcceEeecCCCccCCCCCCCCCcc
Q psy14416 306 HYI-GMRNEQAACYAAQAIGYLTK-KPGVCLVVSGPGLL----HTFGGMA-NAQINCWPMLVIGGSCAQDHEGIGGFQEC 378 (1065)
Q Consensus 306 ~~i-~~~~E~~A~~~A~g~ar~tg-kpgv~~~tsGpG~~----N~~~av~-eA~~~~vPLlvItg~~p~~~~g~ga~Q~i 378 (1065)
|++ .-..|++..-+|.|+|..-+ ++.++. +.++=+. =...++. .....+.|+.+++...-....+-+.+|.+
T Consensus 49 r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~~-~f~~F~~~~q~r~~~~~~~~~~~~~~~v~v~~~~g~~~~~~G~tH~s~ 127 (178)
T PF02779_consen 49 RFINTGIAEQNMVGMAAGLALAGGLRPPVES-TFADFLTPAQIRAFDQIRNDMAYGQLPVPVGTRAGLGYGGDGGTHHSI 127 (178)
T ss_dssp TEEE--S-HHHHHHHHHHHHHHSSSEEEEEE-EEGGGGGGGHHHHHHHHHHHHHHHTS-EEEEEEESGGGSTTGTTTSSS
T ss_pred eEEecCcchhhccceeeeeeecccccceeEe-eccccccccchhhhhhhhhhhhcccceecceeecCccccccccccccc
Confidence 555 56889999999999997654 655554 3333222 1222333 45667778774443332233344667888
Q ss_pred ChhhhhcccccEEe-eCCChhhHHHHHHHHHHHhhcCCCCEEEEecChhh
Q psy14416 379 PQVELARPYCKYSA-RPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANL 427 (1065)
Q Consensus 379 dQ~~l~~~~~k~s~-~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~Dv 427 (1065)
+...+++.+-.+.. ...++.++...++.|++. ...|||+|-.|...
T Consensus 128 ~d~~~~~~iPg~~v~~Psd~~e~~~~l~~a~~~---~~~~P~~ir~~r~~ 174 (178)
T PF02779_consen 128 EDEAILRSIPGMKVVVPSDPAEAKGLLRAAIRR---ESDGPVYIREPRGL 174 (178)
T ss_dssp SHHHHHHTSTTEEEEE-SSHHHHHHHHHHHHHS---SSSSEEEEEEESSE
T ss_pred ccccccccccccccccCCCHHHHHHHHHHHHHh---CCCCeEEEEeeHHh
Confidence 99999999988755 456777777776666652 23699999998654
No 329
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=85.04 E-value=1.7 Score=51.81 Aligned_cols=132 Identities=15% Similarity=0.224 Sum_probs=72.5
Q ss_pred HHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhc---CCCEE--ecCCCCCCCCCCCcccc-----------c-HH
Q psy14416 489 LKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSF---NLPFL--PTPMGKGVVPDAHPNCV-----------S-AA 551 (1065)
Q Consensus 489 v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~l---g~PV~--tt~~gkg~v~~~hpl~l-----------g-~~ 551 (1065)
.+++++.|..|||.+|+-|.|..-+++..++++|++.+ |.-|- --|.+ |..|-+-.-.+ . ..
T Consensus 297 ~~~~a~~l~~A~~VvIVPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVA-GRMPGHMNVLLAEa~VpYd~~~emde 375 (463)
T PF02233_consen 297 AEEVAEMLANAKKVVIVPGYGMAVAQAQHAVAELADLLEERGVEVKFAIHPVA-GRMPGHMNVLLAEANVPYDIVKEMDE 375 (463)
T ss_dssp HHHHHHHHHH-SEEEEEESHHHHHCTTHHHHHHHHHHHHHTT-EEEEEE-TTS-SSSTTHHHHHHHHCT--GGGEEEHHH
T ss_pred HHHHHHHHHhcCceEEecCchHHHHHHHHHHHHHHHHHHhCCCEEEEEecccc-CCCCCcceEEEEecCCCHHHHhhhhh
Confidence 56788899999999999999877666666677766665 44432 22222 23332111011 1 13
Q ss_pred HHhhhcCCCEEEEeCCccc---------cccccCCCc-cccCCCeEEEecCChh----hcc--cc-cccceEEEcCHHHH
Q psy14416 552 RTHALQNADLVLLLGARLN---------WILHFGRAP-RFKSNVKIIQVDLNAE----ELH--NS-VQAAVAIQSDVRLT 614 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~---------~~~~~g~~~-~~~~~~~iI~Vd~d~~----~~~--~~-~~~~~~I~~D~~~~ 614 (1065)
.+..+.+.|++|++|+.-. ....+|.+- +..+.+++|.+..+-. .++ -+ ..-+.-+.+|+++.
T Consensus 376 iN~~f~~~Dv~lViGANDvVNPaA~~d~~SpI~GMPil~v~~ak~Viv~Krsm~~Gyagv~NpLF~~~nt~MlfGDAk~~ 455 (463)
T PF02233_consen 376 INPDFPDTDVVLVIGANDVVNPAAREDPNSPIYGMPILEVWKAKQVIVIKRSMSPGYAGVDNPLFYKDNTRMLFGDAKKT 455 (463)
T ss_dssp HGGGGGG-SEEEEES-SGGG-CHHCCSTTSTTTTSS---GGGSSEEEEEESSS--TTTS-S-GGGGSTTEEEEES-HHHH
T ss_pred cccchhcCCEEEEeccccccCchhccCCCCCCCCCeecchhhcCeEEEEEcCCCCCCCCCCCcceecCCcEEEeccHHHH
Confidence 4667889999999997632 112334321 1113345665554322 111 12 23455689999999
Q ss_pred HHHHHHh
Q psy14416 615 VQQLKQM 621 (1065)
Q Consensus 615 L~~L~~~ 621 (1065)
+++|..+
T Consensus 456 ~~~l~~~ 462 (463)
T PF02233_consen 456 LEELVAE 462 (463)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998764
No 330
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=84.15 E-value=1.7 Score=47.93 Aligned_cols=68 Identities=22% Similarity=0.294 Sum_probs=48.5
Q ss_pred HhhhcCCCEEEEeCCccccccccCCCcc-ccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhh
Q psy14416 553 THALQNADLVLLLGARLNWILHFGRAPR-FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQML 622 (1065)
Q Consensus 553 ~~al~~aDlVI~iG~~~~~~~~~g~~~~-~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l 622 (1065)
...++++|++|.+|+++.-......... ..++.++|.|+.++...+.. .++.+.+|+.++|..|.+.+
T Consensus 172 ~~~~~~~dl~lviGTsl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~--~~~~i~~~~~~~l~~l~~~~ 240 (242)
T PRK00481 172 YEALEEADLFIVIGTSLVVYPAAGLPYEAREHGAKTVEINLEPTPLDSL--FDLVIHGKAGEVVPELVEEL 240 (242)
T ss_pred HHHHhcCCEEEEECCCceEcCHhHHHHHHHHCCCeEEEECCCCCCCCCc--cCEEEECCHHHHHHHHHHHh
Confidence 3456789999999988753222222210 23567899999998766543 58899999999999887654
No 331
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=83.30 E-value=4.7 Score=41.17 Aligned_cols=145 Identities=12% Similarity=0.025 Sum_probs=85.7
Q ss_pred HHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeE-EEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhHH
Q psy14416 12 NQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHY-IGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGG 89 (1065)
Q Consensus 12 ~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~-v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~g 89 (1065)
++.|.+.+++.. +.+..-.+-........+.+ ..-++ -.-..|++.+.+|.|.+. .|...++. +...=..-+...
T Consensus 4 ~~~l~~~~~~~~-~~v~~~~Dl~~~~~~~~~~~~~p~r~i~~gIaE~~~vg~A~GlA~-~G~~pi~~-~~~~f~~ra~dq 80 (156)
T cd07033 4 GEALLELAKKDP-RIVALSADLGGSTGLDKFAKKFPDRFIDVGIAEQNMVGIAAGLAL-HGLKPFVS-TFSFFLQRAYDQ 80 (156)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCCCcHHHHHhCCCCeEEeChhHHHHHHHHHHHHH-CCCeEEEE-ECHHHHHHHHHH
Confidence 456666666642 33333233111122223322 12233 356789999999999996 46555554 443344555566
Q ss_pred Hh-hcccCCCcEEEEecCCCCCc-CccCCCcccchhhhcccccce-eccCCCcccHHHHHHHHHHHhhcCCCcccccc
Q psy14416 90 MA-NAQINCWPMLVIGGSCAQDH-EGIGGFQECPQVELARPYCKY-SARPPNIHLIGQHVEKAVRLSTFGKPGRSLLL 164 (1065)
Q Consensus 90 la-~A~~~~~Pll~Isg~~~~~~-~g~~~~Q~~dq~~l~~~itk~-~~~v~~~~~i~~~l~~A~~~A~~~rpGP~~l~ 164 (1065)
|. ++...+.|++++........ ..-..||..++..+++.+-.. .+...+++++...++.|++. ++|+++.
T Consensus 81 i~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~~-----~~P~~ir 153 (156)
T cd07033 81 IRHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALEY-----DGPVYIR 153 (156)
T ss_pred HHHHHhccCCCeEEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHhC-----CCCEEEE
Confidence 66 77888999999986443333 233457788888898888644 34556666676666666643 2566653
No 332
>TIGR00300 conserved hypothetical protein TIGR00300. All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family.
Probab=82.98 E-value=5.8 Score=45.84 Aligned_cols=141 Identities=25% Similarity=0.261 Sum_probs=94.2
Q ss_pred CCCCCCHHHHHHHHHHHHhC----CCcEEEEccCCCchhHHHHHHHHHhhcCCCEE----------------ecCCCCC-
Q psy14416 480 TLPWPGIAELKQASRLILEA----KAPLVIIGKGAAYSQAETELLSFVNSFNLPFL----------------PTPMGKG- 538 (1065)
Q Consensus 480 ~~~~p~~~~v~~~ae~L~~A----krPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~----------------tt~~gkg- 538 (1065)
....|....++++++.|+.- -+.+.++|....+.++.++|.+|++.==+-.+ -|.+|..
T Consensus 178 S~E~p~~~~~~~ia~~lr~~r~~gG~Iv~V~GPAvvhtga~~ala~Lir~GYV~~LlaGNAlAtHDiE~al~GTsLG~di 257 (407)
T TIGR00300 178 SSERPVETLIEQIAWEMYEIRDKGGKIGVVAGPAVIHTGAAQALAHLIREGYVDALLAGNALAVHDIEQALYGTSLGVDI 257 (407)
T ss_pred CcCCccHHHHHHHHHHHHHHHHCCCCEEEEecCeEEecCcHHHHHHHHHcCcccEEecchHHHHhhhhHhhhCccccccc
Confidence 34456777888888777543 45677778777777888999999876322222 1222211
Q ss_pred ----CCCCCCccccc----------------------------------------------------------HHHHhhh
Q psy14416 539 ----VVPDAHPNCVS----------------------------------------------------------AARTHAL 556 (1065)
Q Consensus 539 ----~v~~~hpl~lg----------------------------------------------------------~~~~~al 556 (1065)
.++..|-+++. .+-++.+
T Consensus 258 ~~~~~v~~GH~~Hl~~IN~irraGSI~~aVe~G~l~~Gimy~cvk~~VPfVLAGSIRDDGPLPdvitDv~~AQ~amR~~~ 337 (407)
T TIGR00300 258 QRGIPVPGGHRHHLKAINSVRRAGGIRDAVEQGIIKKGVMYECVKNNIPYVLAGSIRDDGPLPDVITDVVRAQSKMRELL 337 (407)
T ss_pred cccccCCCchHHHHHHHHHHHHcCCHHHHHHhCCCccchHHHHHhCCCCEEEeeeccCCCCCCcchhhHHHHHHHHHHHh
Confidence 22333332221 0124567
Q ss_pred cCCCEEEEeCCccccccccCCCccccCCCeEEEecCChhhcc----cccccceEEEcCHHHHHHHHHHhhc
Q psy14416 557 QNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELH----NSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 557 ~~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~----~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
+++|+||.+.+.+-+..+...++.+ .+++-||.+|.... +...-.+.++.|+.+|+..|.+.|.
T Consensus 338 ~~a~~vimlaTmLHSIAtGNm~Ps~---v~~~cVDInp~~VtKL~DRGs~qa~giVTdvg~Fl~~L~~~l~ 405 (407)
T TIGR00300 338 QGADMVLMLSTMLHSIAVGNLLPSG---VKTICVDINPAVVTKLSDRGSSQAVGVVTDVGLFLPLLVRQIK 405 (407)
T ss_pred ccCCeehhHHHHHHHHhhccccccc---ceEEEEECCHHHhhhhhccCceeEEEEEecHHHHHHHHHHHHh
Confidence 8999999999999988777776543 47888999986553 3344567899999999999988764
No 333
>KOG3954|consensus
Probab=82.86 E-value=3.1 Score=45.33 Aligned_cols=123 Identities=15% Similarity=0.192 Sum_probs=81.9
Q ss_pred HHHHHHhCCCc------EEEEccCCCc-hhHHHHHHHHHhhcCCCEEecCCC--CCCCCCCCcccccHHHHhhhcCCCEE
Q psy14416 492 ASRLILEAKAP------LVIIGKGAAY-SQAETELLSFVNSFNLPFLPTPMG--KGVVPDAHPNCVSAARTHALQNADLV 562 (1065)
Q Consensus 492 ~ae~L~~AkrP------vIlvG~g~~~-~~a~~~L~~LAe~lg~PV~tt~~g--kg~v~~~hpl~lg~~~~~al~~aDlV 562 (1065)
+-+.|.+.+|| +++.|+...- .+..+.|-.||+++|+-|=++-.+ .|.+|. .+-+|.... +-.++|-
T Consensus 203 v~~~ltkseRPdL~sAkvVVsGGR~LKs~enFkll~~LAdklgaavGAtRaaVDaGyvpN--dlQiGQTGK--IVAPeLY 278 (336)
T KOG3954|consen 203 VSQELTKSERPDLTSAKVVVSGGRGLKSGENFKLLYDLADKLGAAVGATRAAVDAGYVPN--DLQIGQTGK--IVAPELY 278 (336)
T ss_pred HHhhcccccCCccccceEEEECCcccCCcccceehHHHHHHhchhhchhhhhhccCcCCC--ccccccccc--eeccceE
Confidence 34556666666 6677765443 355679999999999999877553 244443 344554333 2368899
Q ss_pred EEeCCccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 563 LLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 563 I~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
|.+|-+=.-..+.|. +..+.++-|+.||.. --+...|..+++|.-..+-+|.++|+
T Consensus 279 iAvGisGAIQHLAGm----KDSKvIvAINkDpdA-PIFqvAD~GlvgDLfkiVPELtekL~ 334 (336)
T KOG3954|consen 279 IAVGISGAIQHLAGM----KDSKVIVAINKDPDA-PIFQVADYGLVGDLFKIVPELTEKLP 334 (336)
T ss_pred EEEeccHHHHHhhcC----ccceEEEEecCCCCC-CceeeecccchhhHHHHhHHHHHhcc
Confidence 999976433333332 334556778888753 23456799999999999999998876
No 334
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=82.82 E-value=1.5 Score=49.41 Aligned_cols=69 Identities=17% Similarity=0.195 Sum_probs=49.8
Q ss_pred HhhhcCCCEEEEeCCccccccccCCCccc-cCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 553 THALQNADLVLLLGARLNWILHFGRAPRF-KSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 553 ~~al~~aDlVI~iG~~~~~~~~~g~~~~~-~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
.+.+.++|++|++|+++.-.....+.... ..+.++|.||.++...+.. .++.|.+|+.++|..|.+.+.
T Consensus 209 ~~~~~~~DlllvvGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~~~~~--~~~~i~g~~~evL~~l~~~l~ 278 (285)
T PRK05333 209 RAALDAADAVLVVGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTRADPL--LTLKVEASCAQALAALVARLG 278 (285)
T ss_pred HHHHhcCCEEEEECcCceecchhhhHHHHHHCCCeEEEECCCCCCCCcc--eeEEEeCCHHHHHHHHHHHhC
Confidence 34567899999999998754333332111 2345888899988766653 488999999999999988775
No 335
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=82.05 E-value=1.8 Score=47.03 Aligned_cols=64 Identities=20% Similarity=0.244 Sum_probs=45.7
Q ss_pred HhhhcCCCEEEEeCCccccccccCCCcc-ccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHH
Q psy14416 553 THALQNADLVLLLGARLNWILHFGRAPR-FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQL 618 (1065)
Q Consensus 553 ~~al~~aDlVI~iG~~~~~~~~~g~~~~-~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L 618 (1065)
.+.++++|++|.+|+++.-......... ..++.+++.|+.++...+ ...++.|.+|+.++|.+|
T Consensus 159 ~~~~~~~dl~lvlGTsl~v~p~~~l~~~~~~~~~~~i~iN~~~~~~~--~~~~~~i~g~~~~~l~~l 223 (224)
T cd01412 159 VEALAKADLFLVIGTSGVVYPAAGLPEEAKERGARVIEINPEPTPLS--PIADFAFRGKAGEVLPAL 223 (224)
T ss_pred HHHHHcCCEEEEECcCccchhHHHHHHHHHHCCCeEEEECCCCCCCC--CcCCEEEECCHHHHHHHh
Confidence 3456799999999987653322222211 135678999999987766 446889999999999876
No 336
>KOG0225|consensus
Probab=81.22 E-value=8.9 Score=43.38 Aligned_cols=32 Identities=31% Similarity=0.462 Sum_probs=22.3
Q ss_pred EEeccccccC---cchhhHHHhhccCccccCCCEEEEEEcCC
Q psy14416 931 IVNNNGIYGG---FDETTYASIVESGEVTTVLPVILVIVNNN 969 (1065)
Q Consensus 931 ~~~gd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~nn~ 969 (1065)
.+-|||+-.| |-..+.+.+ ++||++.|.=||.
T Consensus 192 alYGDGAaNQGQ~fEa~NMA~L-------W~LP~IFvCENN~ 226 (394)
T KOG0225|consen 192 ALYGDGAANQGQVFEAFNMAAL-------WKLPVIFVCENNH 226 (394)
T ss_pred EEeccccccchhHHHHhhHHHH-------hCCCEEEEEccCC
Confidence 7889998731 223344544 7999998888883
No 337
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=80.68 E-value=6 Score=45.14 Aligned_cols=132 Identities=16% Similarity=0.238 Sum_probs=74.4
Q ss_pred HHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhc---CCCEE--ecCCCCCCCCCCCccccc------------HH
Q psy14416 489 LKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSF---NLPFL--PTPMGKGVVPDAHPNCVS------------AA 551 (1065)
Q Consensus 489 v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~l---g~PV~--tt~~gkg~v~~~hpl~lg------------~~ 551 (1065)
.++++++|+.|++.+|+-|.|..-.++...++++++++ |++|= --|.+ |..|.+-.-.+. ..
T Consensus 298 aedaA~~l~nA~sVIIvPGYGmAVAQAQh~v~E~~~~L~~~Gv~VrfaIHPVA-GRmPGHMNVLLAEA~VpYd~v~emdd 376 (463)
T COG1282 298 AEDAAELLKNASSVIIVPGYGMAVAQAQHPVAEITEKLRARGVNVRFAIHPVA-GRMPGHMNVLLAEAKVPYDIVLEMDE 376 (463)
T ss_pred HHHHHHHHhCCCeEEEecCchHHHHhhhhHHHHHHHHHHhcCCeeeEeecccc-cCCCcchhhhhhhccCCHHHHhhHHh
Confidence 35678899999999999999887777777777777766 55553 12222 333332222222 12
Q ss_pred HHhhhcCCCEEEEeCCcccc--------ccccCCCc-cccCCCeEEEecCCh----hhccc---ccccceEEEcCHHHHH
Q psy14416 552 RTHALQNADLVLLLGARLNW--------ILHFGRAP-RFKSNVKIIQVDLNA----EELHN---SVQAAVAIQSDVRLTV 615 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~~--------~~~~g~~~-~~~~~~~iI~Vd~d~----~~~~~---~~~~~~~I~~D~~~~L 615 (1065)
-+..+.++|+++++|+.-.- ...+|.+- ...+.+.++.+...- .-++. +..-+.-+.+|++...
T Consensus 377 IN~dF~~tDVvlVIGANDvvNPAA~~D~SPI~GMPiLeV~KAk~viv~KRsM~sGyAGv~N~LFy~d~T~MlFGDAKk~V 456 (463)
T COG1282 377 INDDFADTDVVLVIGANDVVNPAAQDDNSPIAGMPVLEVWKAKTVIVFKRSMNSGYAGVQNPLFYKDNTMMLFGDAKKSV 456 (463)
T ss_pred hcchhccccEEEEEccCCCCChhhccCCCCcCCCceeeeeccceEEEEeccccccccccCCcceeccCcEEEeccHHHHH
Confidence 34567789999999976321 11222211 011223334333211 11111 1234666889999998
Q ss_pred HHHHHh
Q psy14416 616 QQLKQM 621 (1065)
Q Consensus 616 ~~L~~~ 621 (1065)
+++.+.
T Consensus 457 ~~i~k~ 462 (463)
T COG1282 457 DEILKA 462 (463)
T ss_pred HHHHhc
Confidence 887654
No 338
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=79.26 E-value=6.6 Score=45.99 Aligned_cols=122 Identities=18% Similarity=0.141 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcc--ccc-HHHHhhhcCCC
Q psy14416 486 IAELKQASRLILEAK--APLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPN--CVS-AARTHALQNAD 560 (1065)
Q Consensus 486 ~~~v~~~ae~L~~Ak--rPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl--~lg-~~~~~al~~aD 560 (1065)
+++++.+++.|++.+ +..++.|.... .+....+.+|++.+|.|.+............... ... ......+.++|
T Consensus 72 deAl~~ia~~l~~~~~~~i~~~~~~~~~-~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad 150 (386)
T cd02768 72 EEALKTVAEGLKAVKGDKIGGIAGPRAD-LESLFLLKKLLNKLGSNNIDHRLRQSDLPADNRLRGNYLFNTSIAEIEEAD 150 (386)
T ss_pred HHHHHHHHHHHHhcChhheEEEecCCCC-HHHHHHHHHHHHHhCCCCchhhhccccCccccccccCcccCCCHHHHhhCC
Confidence 678888899998876 56666665433 3444678899999998865331110000000000 000 11223467999
Q ss_pred EEEEeCCcccccc--ccCCCcc-ccC-CCeEEEecCChhhcccccccceEEEcCHH
Q psy14416 561 LVLLLGARLNWIL--HFGRAPR-FKS-NVKIIQVDLNAEELHNSVQAAVAIQSDVR 612 (1065)
Q Consensus 561 lVI~iG~~~~~~~--~~g~~~~-~~~-~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~ 612 (1065)
+||.+|+.+.... ...+..+ ... +++++.||+..... ..+..+.-.+.
T Consensus 151 ~il~~G~n~~~~~p~~~~~~~~a~~~~g~kli~idp~~t~~----~ad~~~~~~pg 202 (386)
T cd02768 151 AVLLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIGPKDTDL----IADLTYPVSPL 202 (386)
T ss_pred EEEEEcCCcchhchHHHHHHHHHHHcCCCeEEEECCCcccc----ccceEEEcCCc
Confidence 9999998875322 1111111 122 67999999877554 34555544443
No 339
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=75.70 E-value=3.6 Score=45.35 Aligned_cols=67 Identities=15% Similarity=0.128 Sum_probs=47.1
Q ss_pred hhhcCCCEEEEeCCccccccccCCCcc-ccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhh
Q psy14416 554 HALQNADLVLLLGARLNWILHFGRAPR-FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQML 622 (1065)
Q Consensus 554 ~al~~aDlVI~iG~~~~~~~~~g~~~~-~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l 622 (1065)
.++.+||++|++|+++.-.....+... ...+++++.|+.++...+. ..+..+.+++.++|.+|.+++
T Consensus 168 ~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~~~~~~--~~~~~i~g~~~~~l~~l~~~~ 235 (242)
T PTZ00408 168 SVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEEGTNYS--QFDESIYGKASVIVPAWVDRV 235 (242)
T ss_pred HHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCCCCCCc--cCCEEEECCHHHHHHHHHHHH
Confidence 346789999999999764333332211 1245788889999866554 346788899999999887654
No 340
>KOG2882|consensus
Probab=74.63 E-value=21 Score=40.12 Aligned_cols=97 Identities=19% Similarity=0.203 Sum_probs=65.4
Q ss_pred CCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeeccccchhhhhhhhhccCCC-cccccCccHHHHHHHHHHhcC--ceE
Q psy14416 208 GDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSNMS-EDYDEELSANQVIAQALKFQG--IEY 284 (1065)
Q Consensus 208 GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~~~~l~~~~g~~-~~~~~~~~~~~~l~~~L~~~G--V~~ 284 (1065)
|+...--+.+.|..+.+.+ .-++||.||.. +...+|.+.+...+.. .....-.+.+..+++.|++.. =+.
T Consensus 36 g~~~ipGs~e~l~~L~~~g-K~i~fvTNNSt------ksr~~y~kK~~~lG~~~v~e~~i~ssa~~~a~ylk~~~~~~k~ 108 (306)
T KOG2882|consen 36 GEKPIPGSPEALNLLKSLG-KQIIFVTNNST------KSREQYMKKFAKLGFNSVKEENIFSSAYAIADYLKKRKPFGKK 108 (306)
T ss_pred cCCCCCChHHHHHHHHHcC-CcEEEEeCCCc------chHHHHHHHHHHhCccccCcccccChHHHHHHHHHHhCcCCCe
Confidence 6666666677777888888 88999999993 3445787777655554 334445678889999998776 356
Q ss_pred EEeecCCchhhhHHHhhcCCceEEEccCCc
Q psy14416 285 VFGIVGIPVIELAMACQQEGIHYIGMRNEQ 314 (1065)
Q Consensus 285 vfg~pG~~~~~l~~al~~~~i~~i~~~~E~ 314 (1065)
||.+-+. .+.+.|.+.|+++...-.+.
T Consensus 109 Vyvig~~---gi~~eL~~aG~~~~g~~~~~ 135 (306)
T KOG2882|consen 109 VYVIGEE---GIREELDEAGFEYFGGGPDG 135 (306)
T ss_pred EEEecch---hhhHHHHHcCceeecCCCCc
Confidence 6665444 34455666667776554444
No 341
>KOG1182|consensus
Probab=73.69 E-value=7 Score=43.69 Aligned_cols=59 Identities=22% Similarity=0.164 Sum_probs=43.4
Q ss_pred CCCcchhHHHHHHhhhcccCC-CCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCC
Q psy14416 179 TMGVGLGFALAAALYCNHYAP-GKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNN 237 (1065)
Q Consensus 179 smG~gl~~AlGaala~~~~~p-~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~ 237 (1065)
++--.+|-|+|++-+.++... ++-+|++.|||+.-=. -..|--++-...|++.|.=||+
T Consensus 194 platqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNNG 255 (432)
T KOG1182|consen 194 PLATQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNNG 255 (432)
T ss_pred hhhhccchhhhhhhhhhhcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCCC
Confidence 445568899999988765444 4899999999985432 2345567778899988888884
No 342
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=73.13 E-value=2.9 Score=46.54 Aligned_cols=62 Identities=16% Similarity=0.213 Sum_probs=42.3
Q ss_pred HHhhhcCCCEEEEeCCccccccccCCCcc-ccCCCeEEEecCChhhcccccccceEEEcCHHHHH
Q psy14416 552 RTHALQNADLVLLLGARLNWILHFGRAPR-FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTV 615 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~~~~~~g~~~~-~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L 615 (1065)
..+.+.+||++|++|+++.-......+.. ...+.+++.||.++...+.. .++.+.+++.++|
T Consensus 198 a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~~~t~~d~~--a~~~i~~~~~~~l 260 (260)
T cd01409 198 AAARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNIGPTRADHL--ATLKVDARCGEVL 260 (260)
T ss_pred HHHHHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcCCCCCCCcc--ccEEEeCChhhhC
Confidence 34556789999999999864333333221 12457889999998776643 5788888877653
No 343
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=70.36 E-value=5.8 Score=44.45 Aligned_cols=69 Identities=16% Similarity=0.279 Sum_probs=47.4
Q ss_pred HhhhcCCCEEEEeCCccccccccCCCcc-ccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 553 THALQNADLVLLLGARLNWILHFGRAPR-FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 553 ~~al~~aDlVI~iG~~~~~~~~~g~~~~-~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
.+.+++||++|++|+++.-....++... ...+++++.|++++...+. ...++.+.+++.+++. +.+.++
T Consensus 194 ~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~t~~~~-~~~d~~i~~~~~~~~~-~~~~~~ 263 (271)
T PTZ00409 194 EKEIDKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNISKTYITN-RISDYHVRAKFSELAQ-ISDILK 263 (271)
T ss_pred HHHHHcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCCCCCCCC-ccccEEEECcHHHHHH-HHHHhc
Confidence 4566899999999999865433333221 1245778889998876542 2358899999999885 446555
No 344
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=67.55 E-value=28 Score=40.61 Aligned_cols=157 Identities=15% Similarity=0.053 Sum_probs=85.8
Q ss_pred ccCccHHHHHHHHHHhcCce--EEEeecCC-c----hhhhHHHhhc-C-CceEE-EccCCchHHHHHHHHHHHhCCCeEE
Q psy14416 264 DEELSANQVIAQALKFQGIE--YVFGIVGI-P----VIELAMACQQ-E-GIHYI-GMRNEQAACYAAQAIGYLTKKPGVC 333 (1065)
Q Consensus 264 ~~~~~~~~~l~~~L~~~GV~--~vfg~pG~-~----~~~l~~al~~-~-~i~~i-~~~~E~~A~~~A~g~ar~tgkpgv~ 333 (1065)
|..++..+++.++|.+..-+ .++.+.++ . .....+.+.+ - .=|++ .-..|+++.-+|.|+|....+|.++
T Consensus 32 ~~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pvv~ 111 (355)
T PTZ00182 32 TVKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIAE 111 (355)
T ss_pred ccchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEEEE
Confidence 44556666777777665433 34444332 2 1222333432 3 24555 5688999999999999965455444
Q ss_pred EEecccccccccccccc--ccc-------cCcceEeecCCCccCCCCCCCC-CccChhhhhcccccEEe-eCCChhhHHH
Q psy14416 334 LVVSGPGLLHTFGGMAN--AQI-------NCWPMLVIGGSCAQDHEGIGGF-QECPQVELARPYCKYSA-RPPNIHLIGQ 402 (1065)
Q Consensus 334 ~~tsGpG~~N~~~av~e--A~~-------~~vPLlvItg~~p~~~~g~ga~-Q~idQ~~l~~~~~k~s~-~l~~~~~i~~ 402 (1065)
....+=+..++--|.+ |+. -++||++....-... .+-..+ |.++ .+++.+..+.. ...++.++..
T Consensus 112 -~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g-~~G~tHs~~~e--a~lr~iPn~~V~~Psd~~e~~~ 187 (355)
T PTZ00182 112 -FMFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVG-HGGAYHSQSFE--AYFAHVPGLKVVAPSDPEDAKG 187 (355)
T ss_pred -echhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCC-CCCCcccchHH--HHHhcCCCCEEEeeCCHHHHHH
Confidence 2222222222221111 222 368888663211111 111223 4443 88888877654 4556777777
Q ss_pred HHHHHHHHhhcCCCCEEEEecChhhhh
Q psy14416 403 HVEKAVRLSTFGKPGVSYLDFPANLLA 429 (1065)
Q Consensus 403 ~i~~A~~~A~~~~~GPV~L~iP~Dv~~ 429 (1065)
.++.|++ . +||++|-.|..+..
T Consensus 188 ~l~~a~~----~-~~P~~i~~p~~l~r 209 (355)
T PTZ00182 188 LLKAAIR----D-PNPVVFFEPKLLYR 209 (355)
T ss_pred HHHHHHh----C-CCcEEEEeehHHhC
Confidence 6666654 2 58999988876554
No 345
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=66.50 E-value=9.8 Score=43.82 Aligned_cols=100 Identities=22% Similarity=0.263 Sum_probs=55.5
Q ss_pred cccccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc-HHHHHHhhhc------C--CCEEE
Q psy14416 161 SLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS-GMELETLVRY------R--LPVIL 231 (1065)
Q Consensus 161 ~~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~-~~eL~t~vr~------~--lpivi 231 (1065)
.|+...-|+...- .|-+||++.-|.||.+- +|+.-++|++|||.+-=. ...=|.+.++ + |||++
T Consensus 126 SH~~p~tPGsIhE---GGELGYaLshA~GA~~D----nPdliv~~vvGDGEaETGplA~sWh~~kflnP~~dGaVLPILh 198 (379)
T PF09364_consen 126 SHVSPETPGSIHE---GGELGYALSHAFGAVFD----NPDLIVACVVGDGEAETGPLAASWHSNKFLNPATDGAVLPILH 198 (379)
T ss_dssp SSS-TTSTT-S------SSTS-HHHHHHHHHTT-----TT-EEEEEEETTGGGSHHHHHHGGGGGSS-TTTS-EEEEEEE
T ss_pred cccCcCCCCccCc---CcchhhHHHHHhhcccC----CCCeEEEEEecCCcccCCcccccccccceeCcccCceeeceEE
Confidence 4544444554322 46889999999999997 899999999999997554 1222322222 3 44444
Q ss_pred EEEcCCeeeeccccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeec
Q psy14416 232 VIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIV 289 (1065)
Q Consensus 232 vV~NN~gy~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~p 289 (1065)
+ | || .+. +. +....++ -+.|.+.++-+|-+-+|..-
T Consensus 199 L---N-G~----KI~-----------~p--Til~r~~-~~eL~~lf~G~Gy~p~~Veg 234 (379)
T PF09364_consen 199 L---N-GY----KIS-----------NP--TILARMS-DEELEALFRGYGYEPIFVEG 234 (379)
T ss_dssp E-----SB----SSS-----------SB---HHHHS--HHHHHHHHHHTTEEEEEEE-
T ss_pred e---c-Cc----ccc-----------CC--eEeeecC-HHHHHHHHHhCCCeEEEEec
Confidence 3 3 44 210 00 0112344 44599999999999887653
No 346
>KOG2682|consensus
Probab=66.11 E-value=12 Score=40.25 Aligned_cols=84 Identities=19% Similarity=0.219 Sum_probs=55.0
Q ss_pred hcCCCEEEEeCCccccccccCCCccccCCCeEEEecCChhh--cccccccceEEEcCHHHHHHHHHHhhcccccCCCCCC
Q psy14416 556 LQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEE--LHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSA 633 (1065)
Q Consensus 556 l~~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~--~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~ 633 (1065)
...+|++|++|+++.-......+...+.+.+-+.|+.+..- .+....-|+.+.+|..+.+++|.+.|.
T Consensus 210 ~~~~dl~lV~GTSL~V~PFAsLpe~vp~~v~RlLiNre~~Gp~~~~~r~rDv~~lgd~d~~~eaLvelLG---------- 279 (314)
T KOG2682|consen 210 FLKVDLLLVMGTSLQVQPFASLPEKVPLSVPRLLINREKAGPFLGMIRYRDVAWLGDCDQGVEALVELLG---------- 279 (314)
T ss_pred ccccceEEEeccceeeeecccchhhhhhcCceeEecccccCccccCcccccchhhccHHHHHHHHHHHhC----------
Confidence 45789999999987533222222233334555667776643 233344689999999999999999886
Q ss_pred CchHHHHHHHHHHhhhhcc
Q psy14416 634 TSPWWQELKLKCQTNRQVK 652 (1065)
Q Consensus 634 ~~~W~~~~~~~~~~~~~~~ 652 (1065)
|.+++++..+......
T Consensus 280 ---W~eele~lv~~e~~~l 295 (314)
T KOG2682|consen 280 ---WKEELEDLVRREHGSL 295 (314)
T ss_pred ---cHHHHHHHHHhhcccc
Confidence 6677666655444433
No 347
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=64.03 E-value=48 Score=31.21 Aligned_cols=80 Identities=21% Similarity=0.253 Sum_probs=50.4
Q ss_pred HHHHHHhhhcCCCEEEEEEcCCeeeeccccchhhhhhhhhccCCCcccccCccHHHHHHHHHHh-cCceEEEeecCCchh
Q psy14416 216 GMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKF-QGIEYVFGIVGIPVI 294 (1065)
Q Consensus 216 ~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~-~GV~~vfg~pG~~~~ 294 (1065)
..-|..+.+.+.| ++++-||... ..-++.+.....+...+...-++.+.+.++.|++ .+.+.+|.+-..
T Consensus 20 ~e~l~~L~~~g~~-~~~lTNns~~------s~~~~~~~L~~~Gi~~~~~~i~ts~~~~~~~l~~~~~~~~v~vlG~~--- 89 (101)
T PF13344_consen 20 VEALDALRERGKP-VVFLTNNSSR------SREEYAKKLKKLGIPVDEDEIITSGMAAAEYLKEHKGGKKVYVLGSD--- 89 (101)
T ss_dssp HHHHHHHHHTTSE-EEEEES-SSS-------HHHHHHHHHHTTTT--GGGEEEHHHHHHHHHHHHTTSSEEEEES-H---
T ss_pred HHHHHHHHHcCCC-EEEEeCCCCC------CHHHHHHHHHhcCcCCCcCEEEChHHHHHHHHHhcCCCCEEEEEcCH---
Confidence 3444455555554 6678999833 3346666667777776666678999999999999 788888876433
Q ss_pred hhHHHhhcCCc
Q psy14416 295 ELAMACQQEGI 305 (1065)
Q Consensus 295 ~l~~al~~~~i 305 (1065)
.+.+.+++.|+
T Consensus 90 ~l~~~l~~~G~ 100 (101)
T PF13344_consen 90 GLREELREAGF 100 (101)
T ss_dssp HHHHHHHHTTE
T ss_pred HHHHHHHHcCC
Confidence 34444555444
No 348
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=63.25 E-value=28 Score=41.19 Aligned_cols=111 Identities=14% Similarity=0.116 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCC-CCCCcc-cccH--HHHhhh-cCC
Q psy14416 485 GIAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVV-PDAHPN-CVSA--ARTHAL-QNA 559 (1065)
Q Consensus 485 ~~~~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v-~~~hpl-~lg~--~~~~al-~~a 559 (1065)
=+++++.+++.|+++++++++.|... ..+....+++|++.+|..+-. .+.... +....+ ..+. .....+ .++
T Consensus 62 WdeAl~~ia~~l~~~~~~~~~~~~~~-~~e~~~~~~~l~~~~g~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~di~~~a 138 (421)
T TIGR03129 62 YEEAIEKAAEILKNAKRPLIYGWSST-SCEAQRAGLELAEKLGAVIDN--TASVCHGPSLLALQEVGWPSCTLGEVKNRA 138 (421)
T ss_pred hHHHHHHHHHHHHhhcCCeEEEcccC-CHHHHHHHHHHHHHHCCCccc--cchhccccHHHHHHhcCCccccHHHHhhcC
Confidence 36888999999999988877655433 334456788999998864311 111000 000000 0010 111233 379
Q ss_pred CEEEEeCCccccccc--cC--------CCccc-cCCCeEEEecCChhhcc
Q psy14416 560 DLVLLLGARLNWILH--FG--------RAPRF-KSNVKIIQVDLNAEELH 598 (1065)
Q Consensus 560 DlVI~iG~~~~~~~~--~g--------~~~~~-~~~~~iI~Vd~d~~~~~ 598 (1065)
|+||.+|+.+..... .. +...- ....+++.||+......
T Consensus 139 d~il~~G~n~~~~~p~~~~r~~~~~~~~~~~~~~~g~~lividp~~s~t~ 188 (421)
T TIGR03129 139 DVIIYWGTNPMHAHPRHMSRYSVFPRGFFTQRGREDRTVIVVDPRKTDTA 188 (421)
T ss_pred CEEEEEccCccccCchHHhhhhhhhhhhhhhcccCCCEEEEECCCCCCcc
Confidence 999999988754321 10 01111 23568999998765443
No 349
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=63.18 E-value=21 Score=43.15 Aligned_cols=113 Identities=12% Similarity=0.038 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHh------CCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH----HHHhh
Q psy14416 486 IAELKQASRLILE------AKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA----ARTHA 555 (1065)
Q Consensus 486 ~~~v~~~ae~L~~------AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~----~~~~a 555 (1065)
+++++.+++.|++ .+...++.|.+...........+|+..+|.|-+......+..+......+|. ....-
T Consensus 88 deAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gs~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~d 167 (461)
T cd02750 88 DEALELIADAIIDTIKKYGPDRVIGFSPIPAMSMVSYAAGSRFASLIGGVSLSFYDWYGDLPPGSPQTWGEQTDVPESAD 167 (461)
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEeeccCCcccchhhHHHHHHHHhcCCccCCCCCcccchhhhhhhhcCCCCCCCChhH
Confidence 5677777777653 2232333332222112234567899999987653322211112222333332 12334
Q ss_pred hcCCCEEEEeCCccccccc--cCCCccc-cCCCeEEEecCChhhcc
Q psy14416 556 LQNADLVLLLGARLNWILH--FGRAPRF-KSNVKIIQVDLNAEELH 598 (1065)
Q Consensus 556 l~~aDlVI~iG~~~~~~~~--~g~~~~~-~~~~~iI~Vd~d~~~~~ 598 (1065)
+.++|+||.+|+.+..... ..++.+. ....++|.||+......
T Consensus 168 ~~~ad~il~~G~N~~~~~~~~~~~l~~ar~~GaklividPr~s~ta 213 (461)
T cd02750 168 WYNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVSPDYSPSA 213 (461)
T ss_pred HhcCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEEcCCCCcch
Confidence 6799999999988754321 1122111 24578999999776554
No 350
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=63.13 E-value=52 Score=34.11 Aligned_cols=121 Identities=12% Similarity=0.006 Sum_probs=73.8
Q ss_pred hHHHhhc-CC-ceEE-EccCCchHHHHHHHHHHHhCCCeEEEEecccccccccccccc--cccc-------CcceEeecC
Q psy14416 296 LAMACQQ-EG-IHYI-GMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMAN--AQIN-------CWPMLVIGG 363 (1065)
Q Consensus 296 l~~al~~-~~-i~~i-~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~e--A~~~-------~vPLlvItg 363 (1065)
..+.+++ .+ .|++ ....|++..-+|.|+|+. |+..++..+.++=+...+--+.. |+.+ +.||+++..
T Consensus 33 ~~~~~~~~~p~~R~~~~gIaEq~~vg~AaGlA~~-G~~pi~~~~~a~Fl~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~ 111 (167)
T cd07036 33 VTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAMN-GLRPIVEIMFADFALPAFDQIVNEAAKLRYMSGGQFKVPIVIRGP 111 (167)
T ss_pred HhHHHHHhCCCceEEeCCCcHHHHHHHHHHHHHc-CCEEEEEeehHHHHHHHHHHHHHHHHHHHHhcCCCccCCEEEEEe
Confidence 3455543 33 4888 568999999999999985 55333333555544444433321 3332 589998863
Q ss_pred CCccCCCCCCCCCccChhhhhcccccEEe-eCCChhhHHHHHHHHHHHhhcCCCCEEEEecC
Q psy14416 364 SCAQDHEGIGGFQECPQVELARPYCKYSA-RPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424 (1065)
Q Consensus 364 ~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~-~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP 424 (1065)
.-. ..+.|..|......+++.+-.... ...++.++...++.+++ .+||+.+--|
T Consensus 112 ~gg--~~~~G~ths~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~-----~~~P~~~~e~ 166 (167)
T cd07036 112 NGG--GIGGGAQHSQSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIR-----DDDPVIFLEH 166 (167)
T ss_pred CCC--CCCcChhhhhhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh-----CCCcEEEEec
Confidence 322 223444454444688888877654 45677777777777764 2388988655
No 351
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=62.70 E-value=14 Score=44.74 Aligned_cols=109 Identities=12% Similarity=0.042 Sum_probs=71.6
Q ss_pred eEE-EccCCchHHHHHHHHHHHhCCCeEEEEeccccccccccccc-ccc--------ccCcceEeecCCCccCCCCCCCC
Q psy14416 306 HYI-GMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMA-NAQ--------INCWPMLVIGGSCAQDHEGIGGF 375 (1065)
Q Consensus 306 ~~i-~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~-eA~--------~~~vPLlvItg~~p~~~~g~ga~ 375 (1065)
|++ .-..|++..-+|.|+|..-.+|.|.+-++ .-+..++--|. ++- ..+.||++...+-+.. +.|++
T Consensus 190 R~id~gIaEq~~vg~AaGlA~~G~rPiv~~~~~-~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~--~~G~h 266 (464)
T PRK11892 190 RVIDTPITEHGFAGIGVGAAFAGLKPIVEFMTF-NFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAA--RVAAQ 266 (464)
T ss_pred ceeecCccHHHHHHHHHHHHhCCCEEEEEEehH-HHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCC--CCCCc
Confidence 455 45679999999999999766666654322 11222222222 222 6679999986554433 26678
Q ss_pred CccChhhhhcccccEEe-eCCChhhHHHHHHHHHHHhhcCCCCEEEEe
Q psy14416 376 QECPQVELARPYCKYSA-RPPNIHLIGQHVEKAVRLSTFGKPGVSYLD 422 (1065)
Q Consensus 376 Q~idQ~~l~~~~~k~s~-~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~ 422 (1065)
|..+...+++.+-.... ...++.++...++.|++ . ++||++-
T Consensus 267 hs~~d~a~~~~iPgl~V~~P~d~~d~~~ll~~ai~----~-~~Pv~il 309 (464)
T PRK11892 267 HSQDYAAWYSHIPGLKVVAPYSAADAKGLLKAAIR----D-PNPVIFL 309 (464)
T ss_pred cccCHHHHHhhCCCCEEEEeCCHHHHHHHHHHHhh----C-CCcEEEE
Confidence 88888899999987654 45677777777776663 2 5899984
No 352
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=62.30 E-value=56 Score=34.86 Aligned_cols=99 Identities=14% Similarity=0.099 Sum_probs=61.7
Q ss_pred cHHHHHHHHHHhCCCcEEEEeCCCChHHH--HHHHH------hCCCeEEEecChhhHHHHH--------HHHHH---hcC
Q psy14416 10 SANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQ------QEGIHYIGMRNEQAACYAA--------QAIGY---LTK 70 (1065)
Q Consensus 10 t~~e~l~~~L~~~GV~~vFgvpG~~~~~l--~~al~------~~~i~~v~~rhE~~A~~mA--------~gyar---~tg 70 (1065)
..++.+++.|++.+-=.+||+-|+....- ...|. +.+++.+....+..- ..| .-|+| ...
T Consensus 29 ~a~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~-~ta~and~~~~~~f~~ql~~~~ 107 (196)
T PRK10886 29 RAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVV-LTAIANDRLHDEVYAKQVRALG 107 (196)
T ss_pred HHHHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHHH-HHHHhccccHHHHHHHHHHHcC
Confidence 56788888888888778889877654333 22221 335665544333222 211 11222 233
Q ss_pred CcE-EEEEeCCcc-hhhhhHHHhhcccCCCcEEEEecCCCC
Q psy14416 71 KPG-VCLVVSGPG-LLHTFGGMANAQINCWPMLVIGGSCAQ 109 (1065)
Q Consensus 71 ~~g-v~~~t~GPG-~~N~l~gla~A~~~~~Pll~Isg~~~~ 109 (1065)
+++ ++++-|+.| .-|++.++..|+..+.|+|.||+....
T Consensus 108 ~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s 148 (196)
T PRK10886 108 HAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGG 148 (196)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 443 556566665 778999999999999999999976543
No 353
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=62.29 E-value=13 Score=43.09 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=24.4
Q ss_pred HhhhcCCCEEEEeCCccccccccCCCccccCCCeEEEecCCh
Q psy14416 553 THALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNA 594 (1065)
Q Consensus 553 ~~al~~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~ 594 (1065)
.+.+.+||++|++|+++.-.............++++.|+.++
T Consensus 200 ~~~~~~aDllLVIGTSL~V~Paa~l~~~a~~~~pvviIN~e~ 241 (349)
T PTZ00410 200 HHDIPEAELLLIIGTSLQVHPFALLACVVPKDVPRVLFNLER 241 (349)
T ss_pred HHHHHhCCEEEEECcCCcccCHHHHHHHHhcCCCEEEECccc
Confidence 445678999999998875433222221112345666677654
No 354
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=61.81 E-value=7.4 Score=41.79 Aligned_cols=56 Identities=21% Similarity=0.239 Sum_probs=36.6
Q ss_pred HHhhhcCCCEEEEeCCccccccccCCCcc-ccCCCeEEEecCChhhcccccccceEEEc
Q psy14416 552 RTHALQNADLVLLLGARLNWILHFGRAPR-FKSNVKIIQVDLNAEELHNSVQAAVAIQS 609 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~~~~~~g~~~~-~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~ 609 (1065)
..+.+.+||++|++|+++.-.....+... .....+++.|+.++...+.. .++.+.+
T Consensus 149 a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~~~~~d~~--~d~~~~~ 205 (206)
T cd01410 149 AAAAACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQPTPKDKL--ADLVIHG 205 (206)
T ss_pred HHHHHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCCCCCCCcc--ccEEEeC
Confidence 34556789999999999864433333321 12457889899998766643 4566654
No 355
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=61.55 E-value=15 Score=45.49 Aligned_cols=102 Identities=25% Similarity=0.242 Sum_probs=62.8
Q ss_pred cccccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCC-C----cccc--HHHHHHhhhcCCCEEEEE
Q psy14416 161 SLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-A----FGFS--GMELETLVRYRLPVILVI 233 (1065)
Q Consensus 161 ~~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDG-s----f~m~--~~eL~t~vr~~lpivivV 233 (1065)
.|+...-|+.. .+ .|-+||++..|.||++- +|+.-+.|++||| + +.++ ..-+....+-+.=+-|++
T Consensus 139 SH~~petPGsI-hE--GGeLGy~l~ha~gAa~d----~Pdli~~~vvGDGeaetgplatsWhs~kf~np~~dGavLPIL~ 211 (793)
T COG3957 139 SHVAPETPGSI-HE--GGELGYALSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPARDGAVLPILH 211 (793)
T ss_pred cccCCCCCCcc-Cc--CcchhHHHHHHHHhhcC----CCCcEEEEEecccccccCccccccccccccCccccCceeeEEE
Confidence 44444445443 22 47899999999999997 8999999999999 2 2222 233444555553333444
Q ss_pred EcCCeeeeccccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeec
Q psy14416 234 VNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIV 289 (1065)
Q Consensus 234 ~NN~gy~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~p 289 (1065)
+| || .+ . .. +....++..+ |-..++.+|-+-+|..-
T Consensus 212 lN--Gy----kI--------~---np--T~lar~s~~e-l~~~f~G~Gy~p~~veg 247 (793)
T COG3957 212 LN--GY----KI--------E---NP--TVLARISDEE-LKALFEGYGYEPVFVEG 247 (793)
T ss_pred ec--ce----ec--------c---Cc--eeeeecChHH-HHHHHhhCCCceeEecC
Confidence 44 56 21 0 00 0112344545 88888999999888753
No 356
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=61.17 E-value=31 Score=35.94 Aligned_cols=111 Identities=14% Similarity=0.043 Sum_probs=65.6
Q ss_pred EecChhhHHHHHHHHHHhcC-CcEEEEEeCCcchh----hhhHHHh-hcccCCCcEEEEecCCCCCcCccCCCcccchhh
Q psy14416 51 GMRNEQAACYAAQAIGYLTK-KPGVCLVVSGPGLL----HTFGGMA-NAQINCWPMLVIGGSCAQDHEGIGGFQECPQVE 124 (1065)
Q Consensus 51 ~~rhE~~A~~mA~gyar~tg-~~gv~~~t~GPG~~----N~l~gla-~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~ 124 (1065)
.-..|++.+.+|.|+|..-+ ++.++.. .++=+. =....+. .....+.|+.+++...-.....-..||..+...
T Consensus 53 ~gIaE~~~vg~a~GlA~~G~~~~~~~~~-f~~F~~~~q~r~~~~~~~~~~~~~~~v~v~~~~g~~~~~~G~tH~s~~d~~ 131 (178)
T PF02779_consen 53 TGIAEQNMVGMAAGLALAGGLRPPVEST-FADFLTPAQIRAFDQIRNDMAYGQLPVPVGTRAGLGYGGDGGTHHSIEDEA 131 (178)
T ss_dssp --S-HHHHHHHHHHHHHHSSSEEEEEEE-EGGGGGGGHHHHHHHHHHHHHHHTS-EEEEEEESGGGSTTGTTTSSSSHHH
T ss_pred cCcchhhccceeeeeeecccccceeEee-ccccccccchhhhhhhhhhhhcccceecceeecCccccccccccccccccc
Confidence 45799999999999997654 6777654 444333 2333444 566667777744432221223345688888899
Q ss_pred hccccccee-ccCCCcccHHHHHHHHHHHhhcCCCccccccc
Q psy14416 125 LARPYCKYS-ARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLN 165 (1065)
Q Consensus 125 l~~~itk~~-~~v~~~~~i~~~l~~A~~~A~~~rpGP~~l~~ 165 (1065)
+++.+-... ....++.++...++.|++. ..+||+++..
T Consensus 132 ~~~~iPg~~v~~Psd~~e~~~~l~~a~~~---~~~~P~~ir~ 170 (178)
T PF02779_consen 132 ILRSIPGMKVVVPSDPAEAKGLLRAAIRR---ESDGPVYIRE 170 (178)
T ss_dssp HHHTSTTEEEEE-SSHHHHHHHHHHHHHS---SSSSEEEEEE
T ss_pred ccccccccccccCCCHHHHHHHHHHHHHh---CCCCeEEEEe
Confidence 999987654 3445556666665555553 2358877643
No 357
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=59.45 E-value=40 Score=38.90 Aligned_cols=121 Identities=9% Similarity=-0.071 Sum_probs=71.5
Q ss_pred HHHhhc-CCc-eEE-EccCCchHHHHHHHHHHHhCCCeEEEEec---cccccccccccccccc-----cCcceEeecCCC
Q psy14416 297 AMACQQ-EGI-HYI-GMRNEQAACYAAQAIGYLTKKPGVCLVVS---GPGLLHTFGGMANAQI-----NCWPMLVIGGSC 365 (1065)
Q Consensus 297 ~~al~~-~~i-~~i-~~~~E~~A~~~A~g~ar~tgkpgv~~~ts---GpG~~N~~~av~eA~~-----~~vPLlvItg~~ 365 (1065)
.+.+.+ -+= |++ .-..|++..-+|.|+|..-.+|.++...+ ..+.=.....++-..+ -++||++..+.-
T Consensus 41 ~~~f~~~fp~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~~~~~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~ 120 (327)
T CHL00144 41 TKGLHEKYGDLRVLDTPIAENSFTGMAIGAAMTGLRPIVEGMNMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRGPGG 120 (327)
T ss_pred HHHHHHHCCCccEeeccccHHHHHHHHHHHHHCCCEEEEEeehhhHHHHHHHHHHHHHHHHhhccCCCccCCEEEEecCC
Confidence 444543 343 777 56899999999999999666666542211 2222233333222221 278988874422
Q ss_pred ccCCCCCCC-C-CccChhhhhcccccEEee-CCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 366 AQDHEGIGG-F-QECPQVELARPYCKYSAR-PPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 366 p~~~~g~ga-~-Q~idQ~~l~~~~~k~s~~-l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
... +.|. + |.+ ..+++.+..+..- ..++.++...++.|++ .+|||+|--|..
T Consensus 121 ~~~--~~G~tHs~~~--ea~~~~iPgl~V~~Psd~~d~~~~l~~a~~-----~~~Pv~ire~~~ 175 (327)
T CHL00144 121 VGR--QLGAEHSQRL--ESYFQSVPGLQIVACSTPYNAKGLLKSAIR-----SNNPVIFFEHVL 175 (327)
T ss_pred CCC--CCCccccccH--HHHHhcCCCCEEEEeCCHHHHHHHHHHHHh-----CCCcEEEEEcHH
Confidence 111 1222 3 444 3899998887554 5677777777766653 358999974433
No 358
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=58.18 E-value=29 Score=43.89 Aligned_cols=112 Identities=15% Similarity=0.196 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhCC---------------Cc--EEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCC---Cc
Q psy14416 486 IAELKQASRLILEAK---------------AP--LVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDA---HP 545 (1065)
Q Consensus 486 ~~~v~~~ae~L~~Ak---------------rP--vIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~---hp 545 (1065)
+++++.+++.|++.+ +| +.+.|+.....+..-.+++|++.+|.+.+... ++-+-... ..
T Consensus 74 deAld~iA~klk~i~~~~~~~~~~~g~~~~g~~si~~~gs~~~~nE~~~~~~kl~r~lGt~~id~~-ar~C~~~tv~~l~ 152 (649)
T cd02752 74 DEALDEIARKMKDIRDASFVEKNAAGVVVNRPDSIAFLGSAKLSNEECYLIRKFARALGTNNLDHQ-ARIUHSPTVAGLA 152 (649)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccCCCceEEEEccCCCCchHHHHHHHHHHHhCCCcccCC-cchhhhHHHHHHH
Confidence 567777887776543 23 45555443333445678999999998765332 22110000 00
Q ss_pred ccccH----HHHhhhcCCCEEEEeCCcccccc--ccCCCccc-cC-CCeEEEecCChhhcc
Q psy14416 546 NCVSA----ARTHALQNADLVLLLGARLNWIL--HFGRAPRF-KS-NVKIIQVDLNAEELH 598 (1065)
Q Consensus 546 l~lg~----~~~~al~~aDlVI~iG~~~~~~~--~~g~~~~~-~~-~~~iI~Vd~d~~~~~ 598 (1065)
..+|. ....-++++|+||.+|+.+.... ...+..+- .. .+++|+||+......
T Consensus 153 ~~~G~ga~tns~~Di~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR~t~Ta 213 (649)
T cd02752 153 NTFGRGAMTNSWNDIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRFTRTA 213 (649)
T ss_pred hhcCCCCCCCCHHHHhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCCCCchh
Confidence 11121 11234678999999998875422 12222211 12 579999999775544
No 359
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=57.22 E-value=28 Score=36.15 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=33.7
Q ss_pred CCccHHHHHHHc-CCCeEeeCCHHHHHHHHHHHHhcCCCCEEE
Q psy14416 1000 PSLRYEKMMAVF-GHDGYLCTTVPQIKQAMKKCLQTTTRPSLI 1041 (1065)
Q Consensus 1000 ~~~~~~~~~~~~-g~~~~~~~~~~~l~~~~~~~~~~~~~~~li 1041 (1065)
|+..+..++..+ |..-+..++..|++..++.+++. ++|++|
T Consensus 122 hs~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~~-~~P~~~ 163 (167)
T cd07036 122 HSQSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIRD-DDPVIF 163 (167)
T ss_pred hhhhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhC-CCcEEE
Confidence 455566777776 88899999999999999999976 889865
No 360
>KOG1182|consensus
Probab=56.84 E-value=21 Score=40.04 Aligned_cols=88 Identities=19% Similarity=0.209 Sum_probs=49.7
Q ss_pred EEecccccc--Ccc-hhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHH
Q psy14416 931 IVNNNGIYG--GFD-ETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKM 1007 (1065)
Q Consensus 931 ~~~gd~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1007 (1065)
+..|||+-. .++ ..+++ .....|++.+.-|| |+--..+.. +++...|-. -.
T Consensus 221 ~yfGdG~aSEGD~HA~~NfA-------Atle~Pvif~CRNN-G~AISTpts--eQyr~DGIa--------------~k-- 274 (432)
T KOG1182|consen 221 TYFGDGAASEGDAHAAFNFA-------ATLECPVIFFCRNN-GWAISTPTS--EQYRGDGIA--------------VK-- 274 (432)
T ss_pred EEecCCcccccchhhhhhHH-------HHhCCCEEEEEcCC-CeeeccccH--HHhcCCceE--------------Ee--
Confidence 899998753 222 33444 33688988776666 621111111 111111110 00
Q ss_pred HHHcCCCeEeeCCHHHH------HHHHHHHHhcCCCCEEEEEEe
Q psy14416 1008 MAVFGHDGYLCTTVPQI------KQAMKKCLQTTTRPSLINILI 1045 (1065)
Q Consensus 1008 ~~~~g~~~~~~~~~~~l------~~~~~~~~~~~~~~~li~~~~ 1045 (1065)
-.+||+..++|.--+-| ++|=+-++.. .+|+|||.++
T Consensus 275 G~aYGi~sIRVDGnD~lAvYnA~k~ARe~av~e-~rPvliEamt 317 (432)
T KOG1182|consen 275 GPAYGIRSIRVDGNDALAVYNAVKEAREMAVTE-QRPVLIEAMT 317 (432)
T ss_pred ccccceEEEEecCcchHHHHHHHHHHHHHHHhc-cCchhhhhhh
Confidence 14789999999876644 3444445554 7999999988
No 361
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=55.79 E-value=62 Score=33.18 Aligned_cols=108 Identities=13% Similarity=0.002 Sum_probs=66.4
Q ss_pred EEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhHHHhhcccC-CCcEEEEecCCCCCcCccC-CCcccchhhhc
Q psy14416 49 YIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQIN-CWPMLVIGGSCAQDHEGIG-GFQECPQVELA 126 (1065)
Q Consensus 49 ~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~gla~A~~~-~~Pll~Isg~~~~~~~g~~-~~Q~~dq~~l~ 126 (1065)
+=.-..|++++.+|.|++.... .. +..+..+-..-+...+..+... ++|+|+.... ....-+.+ .||..++..++
T Consensus 52 ~~~gIaE~~~vg~a~GlA~~G~-~p-i~~~~~~f~~~a~~~~~~~~~~~~~~~v~~~~~-g~~~g~~G~tH~~~~~~~~~ 128 (168)
T smart00861 52 IDTGIAEQAMVGFAAGLALAGL-RP-VVAIFFTFFDRAKDQIRSDGAMGRVPVVVRHDS-GGGVGEDGPTHHSQEDEALL 128 (168)
T ss_pred EEcCcCHHHHHHHHHHHHHcCC-Cc-EEEeeHHHHHHHHHHHHHhCcccCCCEEEEecC-ccccCCCCccccchhHHHHH
Confidence 3456799999999999999754 33 3334555555555555554444 4776655521 11121223 48888999898
Q ss_pred ccccce-eccCCCcccHHHHHHHHHHHhhcCCCccccc
Q psy14416 127 RPYCKY-SARPPNIHLIGQHVEKAVRLSTFGKPGRSLL 163 (1065)
Q Consensus 127 ~~itk~-~~~v~~~~~i~~~l~~A~~~A~~~rpGP~~l 163 (1065)
+.+-.. .+...+++++...++.+++ ...||.++
T Consensus 129 ~~iP~~~v~~P~~~~e~~~~l~~a~~----~~~~p~~i 162 (168)
T smart00861 129 RAIPGLKVVAPSDPAEAKGLLRAAIR----RDDGPPVI 162 (168)
T ss_pred hcCCCcEEEecCCHHHHHHHHHHHHh----CCCCCEEE
Confidence 887743 4556777777777777662 23466554
No 362
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=55.73 E-value=1.1e+02 Score=35.90 Aligned_cols=151 Identities=15% Similarity=0.067 Sum_probs=79.7
Q ss_pred cccccccHHHHHHHHHHhCCC--cEEEEeCCCCh-----HHHHHHHHh-CC-CeEE-EecChhhHHHHHHHHHHhcCCcE
Q psy14416 4 DYDEELSANQVIAQALKFQGI--EYVFGIVGIPV-----IELAMACQQ-EG-IHYI-GMRNEQAACYAAQAIGYLTKKPG 73 (1065)
Q Consensus 4 ~~~~~~t~~e~l~~~L~~~GV--~~vFgvpG~~~-----~~l~~al~~-~~-i~~v-~~rhE~~A~~mA~gyar~tg~~g 73 (1065)
+-|++++..+++.++|.+..- +.++.+.++.- ....+.+.+ .+ =|++ .-..|++++.+|.|.|.. |...
T Consensus 30 ~~~~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~-G~~P 108 (355)
T PTZ00182 30 GATVKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMN-GLRP 108 (355)
T ss_pred ccccchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhC-CCEE
Confidence 346667777777766666432 34555555422 233444433 21 2333 457899999999999994 6655
Q ss_pred EEEEeCCcchhhhhHHHhh--ccc-------CCCcEEEEecCCCCCcCccCCC-cccchhhhccccccee-ccCCCcccH
Q psy14416 74 VCLVVSGPGLLHTFGGMAN--AQI-------NCWPMLVIGGSCAQDHEGIGGF-QECPQVELARPYCKYS-ARPPNIHLI 142 (1065)
Q Consensus 74 v~~~t~GPG~~N~l~gla~--A~~-------~~~Pll~Isg~~~~~~~g~~~~-Q~~dq~~l~~~itk~~-~~v~~~~~i 142 (1065)
+|.....+=...++--|.+ |+. -++||++....-.... .-..| |.++ ++++.+-... ....++.++
T Consensus 109 vv~~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~-~G~tHs~~~e--a~lr~iPn~~V~~Psd~~e~ 185 (355)
T PTZ00182 109 IAEFMFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGH-GGAYHSQSFE--AYFAHVPGLKVVAPSDPEDA 185 (355)
T ss_pred EEEechhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCC-CCCcccchHH--HHHhcCCCCEEEeeCCHHHH
Confidence 5544333222222222211 333 3688887642211111 12234 5444 7887776443 334455555
Q ss_pred HHHHHHHHHHhhcCCCccccc
Q psy14416 143 GQHVEKAVRLSTFGKPGRSLL 163 (1065)
Q Consensus 143 ~~~l~~A~~~A~~~rpGP~~l 163 (1065)
...++.|++ . +||+++
T Consensus 186 ~~~l~~a~~----~-~~P~~i 201 (355)
T PTZ00182 186 KGLLKAAIR----D-PNPVVF 201 (355)
T ss_pred HHHHHHHHh----C-CCcEEE
Confidence 555555443 3 588776
No 363
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=55.36 E-value=60 Score=34.37 Aligned_cols=97 Identities=16% Similarity=0.153 Sum_probs=61.3
Q ss_pred cHHHHHHHHHHhCCCcEEEEeCCCChHHHHHH--H------HhCCCeEEEecChhhHH-----------HHHHHHHHhcC
Q psy14416 10 SANQVIAQALKFQGIEYVFGIVGIPVIELAMA--C------QQEGIHYIGMRNEQAAC-----------YAAQAIGYLTK 70 (1065)
Q Consensus 10 t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~a--l------~~~~i~~v~~rhE~~A~-----------~mA~gyar~tg 70 (1065)
..++.|.++|++.+-=++||+-++......-+ + .+.+++.+.. .+.+.. .++. ......
T Consensus 32 ~a~~~i~~al~~~~rI~i~G~G~S~~~A~~~a~~l~~~~~~~r~g~~~~~~-~d~~~~~~~~~d~~~~~~~~~-~~~~~~ 109 (192)
T PRK00414 32 RAAVLIADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAI-SDVSHLSCVSNDFGYDYVFSR-YVEAVG 109 (192)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhcccccCCCCCceEEec-CcHHHHhhhhccCCHHHHHHH-HHHHhC
Confidence 56778888888888889999877655433333 2 1234554443 333221 1111 122223
Q ss_pred Cc-EEEEEeCCcc-hhhhhHHHhhcccCCCcEEEEecCCC
Q psy14416 71 KP-GVCLVVSGPG-LLHTFGGMANAQINCWPMLVIGGSCA 108 (1065)
Q Consensus 71 ~~-gv~~~t~GPG-~~N~l~gla~A~~~~~Pll~Isg~~~ 108 (1065)
++ -++++.|..| ..+++.++..|+..+.|+|.||+...
T Consensus 110 ~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~ 149 (192)
T PRK00414 110 REGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDG 149 (192)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 33 4667777777 78888999999999999999997643
No 364
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=54.56 E-value=39 Score=35.80 Aligned_cols=101 Identities=16% Similarity=0.168 Sum_probs=64.1
Q ss_pred ccHHHHHHHHHHhcCceEEEeecCCchhhhHHH--h------hcCCceEEEccCCchH-----------HHHHHHHHHHh
Q psy14416 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMA--C------QQEGIHYIGMRNEQAA-----------CYAAQAIGYLT 327 (1065)
Q Consensus 267 ~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~a--l------~~~~i~~i~~~~E~~A-----------~~~A~g~ar~t 327 (1065)
...++.|.++|.+.|-=++||+-++.......+ + .+.++..+.. .+.+. -.++.-.+..-
T Consensus 31 ~~a~~~i~~al~~~~rI~i~G~G~S~~~A~~~a~~l~~~~~~~r~g~~~~~~-~d~~~~~~~~~d~~~~~~~~~~~~~~~ 109 (192)
T PRK00414 31 QRAAVLIADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAI-SDVSHLSCVSNDFGYDYVFSRYVEAVG 109 (192)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhcccccCCCCCceEEec-CcHHHHhhhhccCCHHHHHHHHHHHhC
Confidence 356777888888889999999977765433333 1 2346665544 33211 12222222222
Q ss_pred CCCeEEEEecccc-ccccccccccccccCcceEeecCCCccC
Q psy14416 328 KKPGVCLVVSGPG-LLHTFGGMANAQINCWPMLVIGGSCAQD 368 (1065)
Q Consensus 328 gkpgv~~~tsGpG-~~N~~~av~eA~~~~vPLlvItg~~p~~ 368 (1065)
.+--++++.|..| ..+.+.++..|...++|+|.||+.....
T Consensus 110 ~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~ 151 (192)
T PRK00414 110 REGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGK 151 (192)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCh
Confidence 3335666667666 5677788889999999999999986444
No 365
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=54.34 E-value=10 Score=41.92 Aligned_cols=70 Identities=24% Similarity=0.330 Sum_probs=47.8
Q ss_pred HHhhhcCCCEEEEeCCccccccccCCCc-cccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 552 RTHALQNADLVLLLGARLNWILHFGRAP-RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~~~~~~g~~~-~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
....++++|++|++|++..-....+.+. ...+..+++.||..+..++. ..+..+.+++..++..|.+.+.
T Consensus 176 ~~~~~~~~d~liviGTSl~V~Paa~~p~~~~~~g~~~i~iN~~~~~~~~--~~d~~i~~~a~~~~~~l~~~~~ 246 (250)
T COG0846 176 ALEALKEADLLIVIGTSLKVYPAAGLPELAKRRGAKVIEINLEPTRLDP--IADEVIRGDAGEVLPLLLEELL 246 (250)
T ss_pred HHHHhccCCEEEEECcceEEcChhhhhHHHHhcCCEEEEECCCcccCcc--hhHHHHHhhHHHHHHHHHHHhh
Confidence 3455689999999999876443333222 11356788889987766554 3567777888888888776654
No 366
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=53.60 E-value=8.5 Score=41.92 Aligned_cols=55 Identities=18% Similarity=0.349 Sum_probs=35.3
Q ss_pred HhhhcCCCEEEEeCCccccccccCCCccccCCCeEEEecCChhhcccccccceEEEc
Q psy14416 553 THALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQS 609 (1065)
Q Consensus 553 ~~al~~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~ 609 (1065)
.+.++++|++|++|+++.-............++++|.|+.++...+.. .++.+.+
T Consensus 166 ~~~~~~~DlllviGTSl~v~p~~~l~~~~~~~~~~i~iN~~~~~~~~~--~~~~~~~ 220 (225)
T cd01411 166 IQAIEKADLLVIVGTSFVVYPFAGLIDYRQAGANLIAINKEPTQLDSP--ATLVIKD 220 (225)
T ss_pred HHHHhcCCEEEEECcCCeehhHHHHHHHHhCCCeEEEECCCCCCCCcc--hhehhcc
Confidence 345678999999998765332222222222467899999998776653 3555554
No 367
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=52.63 E-value=2.5e+02 Score=32.47 Aligned_cols=148 Identities=9% Similarity=-0.007 Sum_probs=77.5
Q ss_pred cccHHHHHHHHHHhCCC--cEEEEeCCCC-----hHHHHHHHHhC-CC-eEEEe-cChhhHHHHHHHHHHhcCCcEEEEE
Q psy14416 8 ELSANQVIAQALKFQGI--EYVFGIVGIP-----VIELAMACQQE-GI-HYIGM-RNEQAACYAAQAIGYLTKKPGVCLV 77 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV--~~vFgvpG~~-----~~~l~~al~~~-~i-~~v~~-rhE~~A~~mA~gyar~tg~~gv~~~ 77 (1065)
+++..+++.++|.+..- +.++.+-.+- .....+.+.+. += |++.+ ..|++++.+|.|.|+. |...+|..
T Consensus 3 ~~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~fp~~R~~n~gIaEq~~vg~AaGlA~~-G~~pvv~~ 81 (327)
T CHL00144 3 EVFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKYGDLRVLDTPIAENSFTGMAIGAAMT-GLRPIVEG 81 (327)
T ss_pred cchHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHCCCccEeeccccHHHHHHHHHHHHHC-CCEEEEEe
Confidence 34444555544444322 3555554432 13345555432 32 56654 6899999999999985 44444322
Q ss_pred eC----CcchhhhhHHHhhccc-----CCCcEEEEecCCCCCcCccCCC-cccchhhhcccccceec-cCCCcccHHHHH
Q psy14416 78 VS----GPGLLHTFGGMANAQI-----NCWPMLVIGGSCAQDHEGIGGF-QECPQVELARPYCKYSA-RPPNIHLIGQHV 146 (1065)
Q Consensus 78 t~----GPG~~N~l~gla~A~~-----~~~Pll~Isg~~~~~~~g~~~~-Q~~dq~~l~~~itk~~~-~v~~~~~i~~~l 146 (1065)
.+ ..+.-++.+.++-... -++||++....-.....|. .| |.+ .++++.+-.... ...++.++...+
T Consensus 82 ~~~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~~~~~~G~-tHs~~~--ea~~~~iPgl~V~~Psd~~d~~~~l 158 (327)
T CHL00144 82 MNMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVGRQLGA-EHSQRL--ESYFQSVPGLQIVACSTPYNAKGLL 158 (327)
T ss_pred ehhhHHHHHHHHHHHHHHHHhhccCCCccCCEEEEecCCCCCCCCc-cccccH--HHHHhcCCCCEEEEeCCHHHHHHHH
Confidence 11 1222333343322221 3889988753221111222 24 444 388888876533 345666666666
Q ss_pred HHHHHHhhcCCCcccccc
Q psy14416 147 EKAVRLSTFGKPGRSLLL 164 (1065)
Q Consensus 147 ~~A~~~A~~~rpGP~~l~ 164 (1065)
+.|++ .+||+++.
T Consensus 159 ~~a~~-----~~~Pv~ir 171 (327)
T CHL00144 159 KSAIR-----SNNPVIFF 171 (327)
T ss_pred HHHHh-----CCCcEEEE
Confidence 55543 35888764
No 368
>PRK13936 phosphoheptose isomerase; Provisional
Probab=51.35 E-value=53 Score=34.92 Aligned_cols=101 Identities=15% Similarity=0.159 Sum_probs=61.4
Q ss_pred cHHHHHHHHHHhcCceEEEeecCCchhh--hHHHhh------cCCceEEEccCCchH-----------HHHHHHHHHHhC
Q psy14416 268 SANQVIAQALKFQGIEYVFGIVGIPVIE--LAMACQ------QEGIHYIGMRNEQAA-----------CYAAQAIGYLTK 328 (1065)
Q Consensus 268 ~~~~~l~~~L~~~GV~~vfg~pG~~~~~--l~~al~------~~~i~~i~~~~E~~A-----------~~~A~g~ar~tg 328 (1065)
..++.+++.|.+.+.=++||+-++.... +...+. +.+++++....+... .....-.+....
T Consensus 31 ~a~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~r~~~~r~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~ 110 (197)
T PRK13936 31 QAVELMVQALLNEGKILACGNGGSAADAQHFSAELLNRFERERPSLPAIALTTDTSTLTAIANDYSYNEVFSKQVRALGQ 110 (197)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHccCccCCCCccceeEecCCcHHHHHHHhhcCCHHHHHHHHHHHhCC
Confidence 5677899999999999999997765433 222233 446666654222222 111000111122
Q ss_pred CCeEEEEecccc-ccccccccccccccCcceEeecCCCccC
Q psy14416 329 KPGVCLVVSGPG-LLHTFGGMANAQINCWPMLVIGGSCAQD 368 (1065)
Q Consensus 329 kpgv~~~tsGpG-~~N~~~av~eA~~~~vPLlvItg~~p~~ 368 (1065)
+--+++.-|.+| .-+.+.++..|+..+.|+|.||+.....
T Consensus 111 ~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s~ 151 (197)
T PRK13936 111 PGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDGGK 151 (197)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 334444455555 4457788899999999999999976443
No 369
>PRK13936 phosphoheptose isomerase; Provisional
Probab=51.23 E-value=86 Score=33.31 Aligned_cols=99 Identities=15% Similarity=0.142 Sum_probs=58.5
Q ss_pred cHHHHHHHHHHhCCCcEEEEeCCCChHH--HHHHHH------hCCCeEEEecChhhH----------HHHHHHHHHhcCC
Q psy14416 10 SANQVIAQALKFQGIEYVFGIVGIPVIE--LAMACQ------QEGIHYIGMRNEQAA----------CYAAQAIGYLTKK 71 (1065)
Q Consensus 10 t~~e~l~~~L~~~GV~~vFgvpG~~~~~--l~~al~------~~~i~~v~~rhE~~A----------~~mA~gyar~tg~ 71 (1065)
..++.+++.|.+.+-=++||.-++.... +...+. +.+++.+..-.+... ..+....-....+
T Consensus 31 ~a~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~r~~~~r~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~ 110 (197)
T PRK13936 31 QAVELMVQALLNEGKILACGNGGSAADAQHFSAELLNRFERERPSLPAIALTTDTSTLTAIANDYSYNEVFSKQVRALGQ 110 (197)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHccCccCCCCccceeEecCCcHHHHHHHhhcCCHHHHHHHHHHHhCC
Confidence 4567888999999888999987665433 222232 334555443222211 1111111122233
Q ss_pred c-EEEEEeCCcc-hhhhhHHHhhcccCCCcEEEEecCCC
Q psy14416 72 P-GVCLVVSGPG-LLHTFGGMANAQINCWPMLVIGGSCA 108 (1065)
Q Consensus 72 ~-gv~~~t~GPG-~~N~l~gla~A~~~~~Pll~Isg~~~ 108 (1065)
+ -++++-|..| ..+++..+..|+..+.|+|.||+...
T Consensus 111 ~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~ 149 (197)
T PRK13936 111 PGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDG 149 (197)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 3 3555555555 66688889999999999999996543
No 370
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=51.16 E-value=14 Score=39.86 Aligned_cols=55 Identities=24% Similarity=0.341 Sum_probs=35.7
Q ss_pred hhhcCCCEEEEeCCccccccccCCCcccc-CCCeEEEecCChhhcccccccceEEEcC
Q psy14416 554 HALQNADLVLLLGARLNWILHFGRAPRFK-SNVKIIQVDLNAEELHNSVQAAVAIQSD 610 (1065)
Q Consensus 554 ~al~~aDlVI~iG~~~~~~~~~g~~~~~~-~~~~iI~Vd~d~~~~~~~~~~~~~I~~D 610 (1065)
+.+.++|++|.+|+++.-.....+..... .+.+++.|+.++...+. ..++.+.+|
T Consensus 163 ~~~~~~Dl~lvlGTSl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~~--~~d~~~~~~ 218 (218)
T cd01407 163 EALAKADLLLVIGTSLQVYPAAGLPLYAPERGAPVVIINLEPTPADR--KADLVILGD 218 (218)
T ss_pred HHHhcCCEEEEeCCCcccccHHHHHHHHHHCCCeEEEECCCCCCCCc--cceEEEeCC
Confidence 45567999999998876443333332222 46788999999876653 346666543
No 371
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=51.00 E-value=1.4e+02 Score=34.40 Aligned_cols=148 Identities=11% Similarity=0.021 Sum_probs=75.4
Q ss_pred cccccHHHHHHHHHHhCC--CcEEEEeCCCChH-----HHHHHHHh-C-CCeEEE-ecChhhHHHHHHHHHHhcCCcEEE
Q psy14416 6 DEELSANQVIAQALKFQG--IEYVFGIVGIPVI-----ELAMACQQ-E-GIHYIG-MRNEQAACYAAQAIGYLTKKPGVC 75 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~G--V~~vFgvpG~~~~-----~l~~al~~-~-~i~~v~-~rhE~~A~~mA~gyar~tg~~gv~ 75 (1065)
|++++..+++.++|.+.. =+.++.+..+-.. .+.+.+.+ . .=|++. -..|++++.+|.|.|.. |...+|
T Consensus 1 ~~~~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~-G~~Piv 79 (327)
T PRK09212 1 MAQLTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFA-GLRPIV 79 (327)
T ss_pred CCcchHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHc-CCeeEE
Confidence 344555555555554432 1345555443111 11233322 2 134444 46899999999999995 554444
Q ss_pred EEeC----CcchhhhhHHHhhccc-------CCCcEEEEecCCCCCcCccCCC-cccchhhhccccccee-ccCCCcccH
Q psy14416 76 LVVS----GPGLLHTFGGMANAQI-------NCWPMLVIGGSCAQDHEGIGGF-QECPQVELARPYCKYS-ARPPNIHLI 142 (1065)
Q Consensus 76 ~~t~----GPG~~N~l~gla~A~~-------~~~Pll~Isg~~~~~~~g~~~~-Q~~dq~~l~~~itk~~-~~v~~~~~i 142 (1065)
...+ ..+.-.+..-+ |+. -++|+++....-+....| ..| |.++ ++++.+-... ....++.++
T Consensus 80 ~~~~~~f~~ra~dQi~~d~--a~~~~~~~~~~~v~vv~~~~~g~~~~~G-~tH~~~~e--a~~r~iP~l~V~~P~d~~e~ 154 (327)
T PRK09212 80 EFMTFNFSMQAIDQIVNSA--AKTNYMSGGQLKCPIVFRGPNGAAARVA-AQHSQCYA--AWYSHIPGLKVVAPYFAADC 154 (327)
T ss_pred EeehhhHHHHHHHHHHHHH--HHHhhccCCCcCccEEEEeCCCCCCCCC-cccccCHH--HHHhcCCCCEEEeeCCHHHH
Confidence 3222 11222222222 233 279998876442222222 234 5554 8888776443 234555666
Q ss_pred HHHHHHHHHHhhcCCCcccccc
Q psy14416 143 GQHVEKAVRLSTFGKPGRSLLL 164 (1065)
Q Consensus 143 ~~~l~~A~~~A~~~rpGP~~l~ 164 (1065)
...++.|++ . ++|+++.
T Consensus 155 ~~~l~~a~~----~-~~Pv~i~ 171 (327)
T PRK09212 155 KGLLKTAIR----D-PNPVIFL 171 (327)
T ss_pred HHHHHHHHh----C-CCcEEEE
Confidence 666655553 3 5887763
No 372
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=50.85 E-value=98 Score=37.58 Aligned_cols=148 Identities=12% Similarity=0.056 Sum_probs=83.6
Q ss_pred cccccHHHHHHHHHHhCCC--cEEEEeCCC-----C----hHHHHHHHHhCCCeEEE-ecChhhHHHHHHHHHHhcCCcE
Q psy14416 6 DEELSANQVIAQALKFQGI--EYVFGIVGI-----P----VIELAMACQQEGIHYIG-MRNEQAACYAAQAIGYLTKKPG 73 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV--~~vFgvpG~-----~----~~~l~~al~~~~i~~v~-~rhE~~A~~mA~gyar~tg~~g 73 (1065)
|.+++..+++.++|.+..- +.+|.+-.+ . ...|.+.+- .=|++. -..|++++.+|.|.|..--||-
T Consensus 139 ~~~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fg--p~R~id~gIaEq~~vg~AaGlA~~G~rPi 216 (464)
T PRK11892 139 MVTMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFG--ARRVIDTPITEHGFAGIGVGAAFAGLKPI 216 (464)
T ss_pred ccchHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhC--ccceeecCccHHHHHHHHHHHHhCCCEEE
Confidence 4556666666666655432 345555421 1 223444441 124443 4689999999999999544444
Q ss_pred EEEEeCCcchhhhhHHHh-hcc--------cCCCcEEEEecCCCCCcCccCCCcccchhhhccccccee-ccCCCcccHH
Q psy14416 74 VCLVVSGPGLLHTFGGMA-NAQ--------INCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYS-ARPPNIHLIG 143 (1065)
Q Consensus 74 v~~~t~GPG~~N~l~gla-~A~--------~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~-~~v~~~~~i~ 143 (1065)
|.+.++- -+..+..-|. ++. ..+.||++....-+... .+.||..+..++++.+-... ....++.++.
T Consensus 217 v~~~~~~-f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~--~G~hhs~~d~a~~~~iPgl~V~~P~d~~d~~ 293 (464)
T PRK11892 217 VEFMTFN-FAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAAR--VAAQHSQDYAAWYSHIPGLKVVAPYSAADAK 293 (464)
T ss_pred EEEehHH-HHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCC--CCCccccCHHHHHhhCCCCEEEEeCCHHHHH
Confidence 4333211 1122222222 222 66799999864433333 45588888889998886543 3345556666
Q ss_pred HHHHHHHHHhhcCCCccccc
Q psy14416 144 QHVEKAVRLSTFGKPGRSLL 163 (1065)
Q Consensus 144 ~~l~~A~~~A~~~rpGP~~l 163 (1065)
..++.|++ . ++|+++
T Consensus 294 ~ll~~ai~----~-~~Pv~i 308 (464)
T PRK11892 294 GLLKAAIR----D-PNPVIF 308 (464)
T ss_pred HHHHHHhh----C-CCcEEE
Confidence 66555543 2 588776
No 373
>KOG1905|consensus
Probab=50.66 E-value=27 Score=39.05 Aligned_cols=71 Identities=28% Similarity=0.336 Sum_probs=50.3
Q ss_pred HHHhhhcCCCEEEEeCCccccccccCCCccc-cCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 551 ARTHALQNADLVLLLGARLNWILHFGRAPRF-KSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 551 ~~~~al~~aDlVI~iG~~~~~~~~~g~~~~~-~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
.+.++.++||++|.+|+++.-.....++.+. ....+++-|+..+..-| ..+++.|.+++..++..|.+.|.
T Consensus 209 ~a~~a~~~Ad~~lcLGTSLqI~p~g~lpl~~~k~g~K~~ivNlQ~T~hD--k~A~l~Ihg~vd~Vm~~lm~~Lg 280 (353)
T KOG1905|consen 209 RATKAAKRADLILCLGTSLQILPKGNLPLKMKKRGGKIVIVNLQWTPHD--KIANLKIHGKVDLVMASLMELLG 280 (353)
T ss_pred HHHHHhhhcceEEEeccceEeeeCCCcchhHhccCceEEEEeCccCccc--chhheeehhhHHHHHHHHHHHhC
Confidence 3456778999999999998644333333222 23467777777664433 45789999999999999999885
No 374
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=50.53 E-value=42 Score=39.87 Aligned_cols=51 Identities=8% Similarity=0.189 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecC
Q psy14416 484 PGIAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTP 534 (1065)
Q Consensus 484 p~~~~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~ 534 (1065)
.......+++..|++-.+-++++.....++.+.++|+.|+++.++|+|...
T Consensus 112 GKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~ 162 (451)
T COG0541 112 GKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSG 162 (451)
T ss_pred ChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCC
Confidence 345667788888877655566666678889999999999999999999873
No 375
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=50.49 E-value=56 Score=43.17 Aligned_cols=114 Identities=9% Similarity=-0.036 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHh------CCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH----HHHhh
Q psy14416 486 IAELKQASRLILE------AKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA----ARTHA 555 (1065)
Q Consensus 486 ~~~v~~~ae~L~~------AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~----~~~~a 555 (1065)
+++++.+++.|+. .+...++.|.+...........+|+..+|.+........+.....++..+|. ....-
T Consensus 142 dEAld~IA~kl~~i~~~~Gp~si~~~~~~~~~~~~~~~~~~r~~~~lG~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~D 221 (912)
T TIGR03479 142 DEALTEIADKIIDTFEAQGPDGISLDTPHPHMAPISFAAGSRFANLIGGVSPDIFDDYGDLYTGAFHTFGKAHDSATSDD 221 (912)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceEEeCCCCchhhHHHHHHHHHHHHcCCCccccccccCCCCCcccceeccCccCCchhh
Confidence 5677777776654 3333333344333222223457888888876432111111111222333342 12334
Q ss_pred hcCCCEEEEeCCccccccc--cCCCcc-ccCCCeEEEecCChhhccc
Q psy14416 556 LQNADLVLLLGARLNWILH--FGRAPR-FKSNVKIIQVDLNAEELHN 599 (1065)
Q Consensus 556 l~~aDlVI~iG~~~~~~~~--~g~~~~-~~~~~~iI~Vd~d~~~~~~ 599 (1065)
+.++|+||.+|+.+..... ..++.+ ....+++|.||++......
T Consensus 222 ~~na~~Il~~G~Np~~t~~~~~~~l~~a~~~GaklVvIdPr~t~tA~ 268 (912)
T TIGR03479 222 WFNADYIIMWGSNPSVTRIPDAHFLSEARYNGARVVSIAPDYNPSTI 268 (912)
T ss_pred hhcCcEEEEecCChHHcCCchHHHHHHHHhcCCeEEEECCCCChhhh
Confidence 5799999999988754322 112111 1245799999998765543
No 376
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=50.42 E-value=42 Score=33.44 Aligned_cols=96 Identities=24% Similarity=0.291 Sum_probs=56.0
Q ss_pred cHHHHHHHHHHhCCCcEEEEeCCCChH--HHHHHHHh----CCCe-EEEecChhh-----------HHHHHHHHHHhcCC
Q psy14416 10 SANQVIAQALKFQGIEYVFGIVGIPVI--ELAMACQQ----EGIH-YIGMRNEQA-----------ACYAAQAIGYLTKK 71 (1065)
Q Consensus 10 t~~e~l~~~L~~~GV~~vFgvpG~~~~--~l~~al~~----~~i~-~v~~rhE~~-----------A~~mA~gyar~tg~ 71 (1065)
..++.+++++++-|.=++||.-|+... ++...+.. ..+. ...+-+..+ .+|+..-......+
T Consensus 23 ~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (138)
T PF13580_consen 23 KAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLLALYDIR 102 (138)
T ss_dssp HHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHHHTT--
T ss_pred HHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchhhHHHHHHHHHcCCC
Confidence 578999999999999999998665433 22222211 1121 133343332 22222222223366
Q ss_pred cE-EEEEeCCcc-hhhhhHHHhhcccCCCcEEEEec
Q psy14416 72 PG-VCLVVSGPG-LLHTFGGMANAQINCWPMLVIGG 105 (1065)
Q Consensus 72 ~g-v~~~t~GPG-~~N~l~gla~A~~~~~Pll~Isg 105 (1065)
|+ ++++.|..| ..|.+.++..|+.-+.++|.|||
T Consensus 103 ~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 103 PGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 66 555555444 78999999999999999999986
No 377
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=49.58 E-value=44 Score=41.94 Aligned_cols=111 Identities=17% Similarity=0.096 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCC---CCCCCcccccHHHHhhhcCCCEE
Q psy14416 486 IAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGV---VPDAHPNCVSAARTHALQNADLV 562 (1065)
Q Consensus 486 ~~~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~---v~~~hpl~lg~~~~~al~~aDlV 562 (1065)
+++++.+++.|++.++..++.|.... .+....+.+|++.+|.+-+........ .+......+|. ....+.++|+|
T Consensus 289 deAl~~ia~kL~~i~~va~~~~~~~~-~e~~~~~~~~~~~lGt~~~~~~~~~~~~~~~~~~~~~~~g~-~~~di~~ad~i 366 (603)
T TIGR01973 289 AEALAIAAEKLKASSRIGGIAGPRSS-LEELFALKKLVRKLGSENFDLRIRNYEFESADLRANYLFNT-TLADIEEADLV 366 (603)
T ss_pred HHHHHHHHHHHhccCcEEEEeCCCCC-HHHHHHHHHHHHHhCCCcccccccccccccchhhcccccCC-CHHHHHhCCEE
Confidence 67888888888887666666665433 344567889999999775432221100 01111112232 22346789999
Q ss_pred EEeCCcccccc--ccCCCc-cccCC-CeEEEecCChhhcc
Q psy14416 563 LLLGARLNWIL--HFGRAP-RFKSN-VKIIQVDLNAEELH 598 (1065)
Q Consensus 563 I~iG~~~~~~~--~~g~~~-~~~~~-~~iI~Vd~d~~~~~ 598 (1065)
|.+|+.+.... ...+.. ...++ .++|.||+......
T Consensus 367 l~~G~N~~~s~p~~~~~i~~a~~~ggaklividpr~s~ta 406 (603)
T TIGR01973 367 LLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGIEKWNLT 406 (603)
T ss_pred EEEccCchhhhHHHHHHHHHHHhcCCcEEEEECCccccch
Confidence 99999875432 111211 11123 78999998665443
No 378
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=49.38 E-value=4.4 Score=45.24 Aligned_cols=146 Identities=13% Similarity=0.085 Sum_probs=78.9
Q ss_pred cHHHHHHHHHHhcCceEEEeecCCch-hhhHHHhhcCCceEEE----------ccCCchHHHHHHHHHHHhCC-CeEEEE
Q psy14416 268 SANQVIAQALKFQGIEYVFGIVGIPV-IELAMACQQEGIHYIG----------MRNEQAACYAAQAIGYLTKK-PGVCLV 335 (1065)
Q Consensus 268 ~~~~~l~~~L~~~GV~~vfg~pG~~~-~~l~~al~~~~i~~i~----------~~~E~~A~~~A~g~ar~tgk-pgv~~~ 335 (1065)
....+.++.+.+.|.+.|...-+... ..|....-.+..++|. ..||...+.+=.||.-..|. .+++-=
T Consensus 37 ~evnAaiega~~aGa~eIvV~DsHg~~~Nl~~e~L~~~a~LI~G~prp~~Mm~Gld~s~D~v~fiGYHa~aG~~~gvl~H 116 (270)
T cd08769 37 EELNAVLEELFESGFEEIVVADSHGRMDNIDYEELDPRVSLVSGYPRPLSMMTGLDESFDAVLFIGYHAGAGTPKGIMDH 116 (270)
T ss_pred HHHHHHHHHHHHcCCcEEEEEcCCCCcCCCChHHCCcceEEEecCCCCchHhhccccCccEEEEEecCCCCCCCCCcccc
Confidence 45677889999999999999875322 2232222123344443 33443332233555544555 344322
Q ss_pred e-ccccccccc----------cccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHH
Q psy14416 336 V-SGPGLLHTF----------GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHV 404 (1065)
Q Consensus 336 t-sGpG~~N~~----------~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i 404 (1065)
| +|-+..+.. -.-+-|-.-++||+++|||.-........+..+--+..-+.+.+++....+|+.+.+.|
T Consensus 117 T~s~~~~~~v~iNG~~~gE~~lNa~~Ag~~gVPV~lVsGDd~~~~ea~~~~P~~~tv~vK~~~gr~aA~~~~p~~a~~~I 196 (270)
T cd08769 117 TYSGSTIYNIWINGKEMNETLINAAYAGEFGVPVVLVAGDSELEKEVKEETPWAVFVPTKESLSRYSAKSPSMKKVKEEL 196 (270)
T ss_pred ccccCceEEEEECCEEcCHHHHHHHHHhhcCCCEEEEecCHHHHHHHHHhCCCceEEEEeeecCCCccccCCHHHHHHHH
Confidence 2 233322221 11133445689999999996442211111111222233345566777778888888888
Q ss_pred HHHHHHhhc
Q psy14416 405 EKAVRLSTF 413 (1065)
Q Consensus 405 ~~A~~~A~~ 413 (1065)
+++.+.|+.
T Consensus 197 ~~aa~~Al~ 205 (270)
T cd08769 197 REAVKEALE 205 (270)
T ss_pred HHHHHHHHH
Confidence 888887763
No 379
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=49.33 E-value=17 Score=44.38 Aligned_cols=113 Identities=16% Similarity=0.086 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhCC------CcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH---HHHhhh
Q psy14416 486 IAELKQASRLILEAK------APLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA---ARTHAL 556 (1065)
Q Consensus 486 ~~~v~~~ae~L~~Ak------rPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~---~~~~al 556 (1065)
+++++.+++.|++.+ ...++.+.+..........++|+..+|.+-+......+.....+...+|. .....+
T Consensus 76 deAl~~ia~~l~~i~~~~G~~si~~~~~~g~~~~~~~~~~~~~~~~~Gs~~~~~~~c~~~~~~~~~~~~G~~~~~~~~d~ 155 (501)
T cd02766 76 DEALDTIAAKLKEIKAEYGPESILPYSYAGTMGLLQRAARGRFFHALGASELRGTICSGAGIEAQKYDFGASLGNDPEDM 155 (501)
T ss_pred HHHHHHHHHHHHHHHHhhCCcEEEEecccCCccccchHHHHHHHHhCCCCCCCCCccHHHHHHHHHhhcCCCCCCCHHHH
Confidence 577778888776543 34444433332111122236788888877643211100000000111221 122356
Q ss_pred cCCCEEEEeCCcccccccc--CCCcc-ccCCCeEEEecCChhhcc
Q psy14416 557 QNADLVLLLGARLNWILHF--GRAPR-FKSNVKIIQVDLNAEELH 598 (1065)
Q Consensus 557 ~~aDlVI~iG~~~~~~~~~--g~~~~-~~~~~~iI~Vd~d~~~~~ 598 (1065)
.++|+||.+|+.+...... .++.+ ....+++|.||+......
T Consensus 156 ~~ad~il~~G~Np~~s~p~~~~~~~~a~~~GaklivvDPr~t~ta 200 (501)
T cd02766 156 VNADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVIDPYRTATA 200 (501)
T ss_pred hcCCEEEEECCChhhhchhHHHHHHHHHHCCCEEEEECCCCCccH
Confidence 7999999999987543211 11111 124679999998776544
No 380
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=48.53 E-value=50 Score=39.20 Aligned_cols=148 Identities=22% Similarity=0.241 Sum_probs=83.8
Q ss_pred cchhhhhHHHhhcccC----------CCcEEEEecCCCCCcCccCCCcccc-----hhhhcccccce-------eccCCC
Q psy14416 81 PGLLHTFGGMANAQIN----------CWPMLVIGGSCAQDHEGIGGFQECP-----QVELARPYCKY-------SARPPN 138 (1065)
Q Consensus 81 PG~~N~l~gla~A~~~----------~~Pll~Isg~~~~~~~g~~~~Q~~d-----q~~l~~~itk~-------~~~v~~ 138 (1065)
|.++|.++-++....| +.|+++.-.....-....-..+.+. -..++.|..++ .-+..+
T Consensus 90 PaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~ii~P~~g~la~~~~g~gr~~~ 169 (399)
T PRK05579 90 PATADLIAKLAHGIADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNLATLRSRGVEIIGPASGRLACGDVGPGRMAE 169 (399)
T ss_pred eCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHHHHHHHCCCEEECCCCccccCCCcCCCCCCC
Confidence 7777877777766665 6799988755433221111111111 12244554444 236777
Q ss_pred cccHHHHHHHHHHH-hhcCCCcccccccCC-------CccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCC
Q psy14416 139 IHLIGQHVEKAVRL-STFGKPGRSLLLNNL-------PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS 210 (1065)
Q Consensus 139 ~~~i~~~l~~A~~~-A~~~rpGP~~l~~~~-------p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDG 210 (1065)
++++...+.+.+.. -+. |-.++-+.. |-+++....-|.|| .++.-+++ .-+-+|+++.|+.
T Consensus 170 ~~~I~~~~~~~~~~~~l~---gk~vlITgG~T~E~ID~VR~isN~SSG~~G----~aiA~~l~----~~Ga~V~~v~~~~ 238 (399)
T PRK05579 170 PEEIVAAAERALSPKDLA---GKRVLITAGPTREPIDPVRYITNRSSGKMG----YALARAAA----RRGADVTLVSGPV 238 (399)
T ss_pred HHHHHHHHHHHhhhcccC---CCEEEEeCCCccccccceeeeccCCcchHH----HHHHHHHH----HCCCEEEEeCCCc
Confidence 88888888777742 122 222222222 44555555555555 55555555 4677899998886
Q ss_pred Ccc----------ccHHHHHHhhhcCCCEEEEEEcCCee
Q psy14416 211 AFG----------FSGMELETLVRYRLPVILVIVNNNGI 239 (1065)
Q Consensus 211 sf~----------m~~~eL~t~vr~~lpivivV~NN~gy 239 (1065)
+.. -+.+++..+++...+-+-+++||.|.
T Consensus 239 ~~~~~~~~~~~dv~~~~~~~~~v~~~~~~~DilI~~Aav 277 (399)
T PRK05579 239 NLPTPAGVKRIDVESAQEMLDAVLAALPQADIFIMAAAV 277 (399)
T ss_pred cccCCCCcEEEccCCHHHHHHHHHHhcCCCCEEEEcccc
Confidence 531 13567777776656656677888865
No 381
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=48.23 E-value=34 Score=43.64 Aligned_cols=107 Identities=16% Similarity=0.167 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhC--CCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCC--CcccccHHHHhhhcCCCE
Q psy14416 486 IAELKQASRLILEA--KAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDA--HPNCVSAARTHALQNADL 561 (1065)
Q Consensus 486 ~~~v~~~ae~L~~A--krPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~--hpl~lg~~~~~al~~aDl 561 (1065)
+++++.+++.|++. ++..+++|.... .+....+++|++.+|.+.+.+......+... ..+.++. ...-+.++|+
T Consensus 290 dEAl~~iA~kL~~~~~~~ia~i~g~~~~-~E~~~~lkkl~~~lGs~nid~~~~~~~~~~~~~~~~~~~~-si~dIe~AD~ 367 (687)
T PRK09130 290 DEAFAAIAAKIKGTPGEKIAAIAGDLAD-VESMFALKDLMQKLGSSNLDCRQDGAKLDPSLRASYLFNT-TIAGIEEADA 367 (687)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEECCCCC-HHHHHHHHHHHHHcCCCccccccchhhhhhhhhccCCCCC-CHHHHHhCCE
Confidence 67888888888875 456777776554 3445688999999999877543211011100 0011121 2234689999
Q ss_pred EEEeCCcccccc--ccCCCc-cccCC-CeEEEecCCh
Q psy14416 562 VLLLGARLNWIL--HFGRAP-RFKSN-VKIIQVDLNA 594 (1065)
Q Consensus 562 VI~iG~~~~~~~--~~g~~~-~~~~~-~~iI~Vd~d~ 594 (1065)
||.+|+.+.+.. ...++. .+..+ .+++.||+..
T Consensus 368 IlliG~Np~~eaPvl~~rirka~~~g~~kIivIdpr~ 404 (687)
T PRK09130 368 ILLIGANPRFEAPVLNARIRKRWRAGGFKIAVIGEQA 404 (687)
T ss_pred EEEEccCcccccHHHHHHHHHHHHcCCCeEEEEcCcc
Confidence 999999875322 111221 12233 4889888764
No 382
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=46.73 E-value=61 Score=32.92 Aligned_cols=98 Identities=16% Similarity=0.170 Sum_probs=58.8
Q ss_pred HHHHHHHHhcCceEEEeecCCchhhhHHH--------hhcCCceEEEcc---CC--------chHHHHHHHHHHHhCCCe
Q psy14416 271 QVIAQALKFQGIEYVFGIVGIPVIELAMA--------CQQEGIHYIGMR---NE--------QAACYAAQAIGYLTKKPG 331 (1065)
Q Consensus 271 ~~l~~~L~~~GV~~vfg~pG~~~~~l~~a--------l~~~~i~~i~~~---~E--------~~A~~~A~g~ar~tgkpg 331 (1065)
+.+++.|.+.+.=++||+-++.......+ +.+.++..+... ++ ...-.++.-++..-++--
T Consensus 2 ~~~~~~l~~a~rI~~~G~G~S~~~A~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 81 (154)
T TIGR00441 2 VLLADSFKAGGKVLICGNGGSACDAQHFAAELTGRYRENRPGLPAIALSADVSHLTCVSNDYGYEDVFSRQVEALGQKGD 81 (154)
T ss_pred hHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhhcccccCCCCceEEecCCcHHHHHHhhccCCHHHHHHHHHHHhCCCCC
Confidence 46889999999999999977654332221 123455554433 11 111111111111124445
Q ss_pred EEEEeccccc-cccccccccccccCcceEeecCCCccC
Q psy14416 332 VCLVVSGPGL-LHTFGGMANAQINCWPMLVIGGSCAQD 368 (1065)
Q Consensus 332 v~~~tsGpG~-~N~~~av~eA~~~~vPLlvItg~~p~~ 368 (1065)
++++-|.+|- .+.+.++..|...++|+|.||+.....
T Consensus 82 ~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~ 119 (154)
T TIGR00441 82 VLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGGK 119 (154)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 7777777775 456677788999999999999965443
No 383
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=46.39 E-value=37 Score=42.24 Aligned_cols=58 Identities=21% Similarity=0.233 Sum_probs=42.6
Q ss_pred cCCCcchhHHHHHHh--------hhcccCCCCeEEEEeCCCCccc--cHHHHHHhhhcCCCEEEEEEcC
Q psy14416 178 GTMGVGLGFALAAAL--------YCNHYAPGKRVVCVQGDSAFGF--SGMELETLVRYRLPVILVIVNN 236 (1065)
Q Consensus 178 gsmG~gl~~AlGaal--------a~~~~~p~rrvV~l~GDGsf~m--~~~eL~t~vr~~lpivivV~NN 236 (1065)
+|||-|.-.|+=.++ +... .++++|+||.|||-+-= +-..|..+.|++|.-+++|+|=
T Consensus 192 vSmGLGp~~aiyqArf~kYL~~RGl~~-~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVinc 259 (887)
T COG2609 192 VSMGLGPIQAIYQARFLKYLEARGLKD-TSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINC 259 (887)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCCcC-CCCCeEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEec
Confidence 789877555543332 1112 58899999999998543 3667888999999999999973
No 384
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=45.52 E-value=3.7e+02 Score=30.92 Aligned_cols=156 Identities=14% Similarity=0.111 Sum_probs=85.3
Q ss_pred CCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEE--cCCeee-----eccccchhhhhhhhhccCCCcccccCccHH
Q psy14416 198 APGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIV--NNNGIY-----GGFDEATYAWLDIIKKSNMSEDYDEELSAN 270 (1065)
Q Consensus 198 ~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~--NN~gy~-----~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~ 270 (1065)
..+..+++...+..-.--...+.++.++++.-+|+.- .|.-+. +++..-..+ +.............+..++
T Consensus 86 ~~gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~~P~V~i~--~~~~~~~~~~V~~Dn~~~~ 163 (333)
T COG1609 86 EAGYSLLLANTDDDPEKEREYLETLLQKRVDGLILLGERPNDSLLELLAAAGIPVVVID--RSPPGLGVPSVGIDNFAGA 163 (333)
T ss_pred HcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHhcCCCEEEEe--CCCccCCCCEEEEChHHHH
Confidence 4566777777776433334556777788888777764 222110 000000000 0000111112234567888
Q ss_pred HHHHHHHHhcCceEEEeecCCc-h-------hhhHHHhhcCCce---EEEcc--CCchHHHHHHHHHHHh--CC-CeEEE
Q psy14416 271 QVIAQALKFQGIEYVFGIVGIP-V-------IELAMACQQEGIH---YIGMR--NEQAACYAAQAIGYLT--KK-PGVCL 334 (1065)
Q Consensus 271 ~~l~~~L~~~GV~~vfg~pG~~-~-------~~l~~al~~~~i~---~i~~~--~E~~A~~~A~g~ar~t--gk-pgv~~ 334 (1065)
..+++.|.+.|.+++.-+-|.. . ..+.+++++.++. ..... .....++.+ ....+. .+ |-+++
T Consensus 164 ~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~i~~~~~~~~~g~~~-~~~ll~~~~~~ptAif 242 (333)
T COG1609 164 YLATEHLIELGHRRIAFIGGPLDSSASRERLEGYRAALREAGLPINPEWIVEGDFSEESGYEA-AERLLARGEPRPTAIF 242 (333)
T ss_pred HHHHHHHHHCCCceEEEEeCCCccccHhHHHHHHHHHHHHCCCCCCcceEEecCCChHHHHHH-HHHHHhcCCCCCcEEE
Confidence 9999999999999877776652 1 2244556666654 23222 122333322 222222 23 89999
Q ss_pred EeccccccccccccccccccCcc
Q psy14416 335 VVSGPGLLHTFGGMANAQINCWP 357 (1065)
Q Consensus 335 ~tsGpG~~N~~~av~eA~~~~vP 357 (1065)
|.+..-+.-++-++.+.-.. +|
T Consensus 243 ~~nD~~Alg~l~~~~~~g~~-vP 264 (333)
T COG1609 243 CANDLMALGALRALRELGLR-VP 264 (333)
T ss_pred EcCcHHHHHHHHHHHHcCCC-CC
Confidence 99888777777777776666 77
No 385
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=45.35 E-value=20 Score=38.94 Aligned_cols=55 Identities=22% Similarity=0.213 Sum_probs=34.7
Q ss_pred HHhhhcCCCEEEEeCCccccccccCCCccc-cCCCeEEEecCChhhcccccccceEEE
Q psy14416 552 RTHALQNADLVLLLGARLNWILHFGRAPRF-KSNVKIIQVDLNAEELHNSVQAAVAIQ 608 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~~~~~~g~~~~~-~~~~~iI~Vd~d~~~~~~~~~~~~~I~ 608 (1065)
..+.+.+||++|++|+++.-.....+.... ....++|.||.++...+.. .++.+.
T Consensus 165 a~~~~~~~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~i~iN~~~~~~~~~--~~~~i~ 220 (222)
T cd01413 165 AIEAAKEADLFIVLGSSLVVYPANLLPLIAKENGAKLVIVNADETPFDYI--ADLVIQ 220 (222)
T ss_pred HHHHHhcCCEEEEEccCCEeccHhHHHHHHHHcCCeEEEEcCCCCCCCcc--eeEEEe
Confidence 345667899999999997643333332211 2456788899998755543 345543
No 386
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=44.19 E-value=1.1e+02 Score=30.95 Aligned_cols=95 Identities=16% Similarity=0.169 Sum_probs=56.4
Q ss_pred HHHHHHHHhCCCcEEEEeCCCChHHHHHH--H------HhCCCeEEEec---ChhhHH----HHHHHHHH---hc-CCcE
Q psy14416 13 QVIAQALKFQGIEYVFGIVGIPVIELAMA--C------QQEGIHYIGMR---NEQAAC----YAAQAIGY---LT-KKPG 73 (1065)
Q Consensus 13 e~l~~~L~~~GV~~vFgvpG~~~~~l~~a--l------~~~~i~~v~~r---hE~~A~----~mA~gyar---~t-g~~g 73 (1065)
+.+++.|.+.+.=++||+-++......-+ + .+.++..+... ++..+. ....-+.+ .. .+--
T Consensus 2 ~~~~~~l~~a~rI~~~G~G~S~~~A~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 81 (154)
T TIGR00441 2 VLLADSFKAGGKVLICGNGGSACDAQHFAAELTGRYRENRPGLPAIALSADVSHLTCVSNDYGYEDVFSRQVEALGQKGD 81 (154)
T ss_pred hHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhhcccccCCCCceEEecCCcHHHHHHhhccCCHHHHHHHHHHHhCCCCC
Confidence 46889999988888899866654333221 1 12344443322 122111 01111222 12 3445
Q ss_pred EEEEeCCcc-hhhhhHHHhhcccCCCcEEEEecCC
Q psy14416 74 VCLVVSGPG-LLHTFGGMANAQINCWPMLVIGGSC 107 (1065)
Q Consensus 74 v~~~t~GPG-~~N~l~gla~A~~~~~Pll~Isg~~ 107 (1065)
++++-+.+| ..+.+..+..|+..++|+|.||+..
T Consensus 82 ~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~ 116 (154)
T TIGR00441 82 VLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKD 116 (154)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 777777777 5677788888999999999999643
No 387
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=44.18 E-value=70 Score=37.41 Aligned_cols=108 Identities=16% Similarity=0.162 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCC--CcccccHHHHhhhcCCCE
Q psy14416 486 IAELKQASRLILEAK--APLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDA--HPNCVSAARTHALQNADL 561 (1065)
Q Consensus 486 ~~~v~~~ae~L~~Ak--rPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~--hpl~lg~~~~~al~~aDl 561 (1065)
+++++.+++.|++.+ ...++.|... ..+....+++|++.+|.+-+............ .....+.. ...+.++|+
T Consensus 71 deAl~~ia~~l~~~~~~si~~~~g~~~-~~e~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~-~~di~~ad~ 148 (375)
T cd02773 71 EEALAAIAKALKGVKPDEIAAIAGDLA-DVESMVALKDLLNKLGSENLACEQDGPDLPADLRSNYLFNTT-IAGIEEADA 148 (375)
T ss_pred HHHHHHHHHHHhhcCcCcEEEEeCCCC-CHHHHHHHHHHHHHhCCCcccccccccccccccccccccCCC-HHHHhhCCE
Confidence 678888888888764 5566655433 23445678899999999866443221111111 11112222 234689999
Q ss_pred EEEeCCcccccc--ccCCCc-ccc-CCCeEEEecCChh
Q psy14416 562 VLLLGARLNWIL--HFGRAP-RFK-SNVKIIQVDLNAE 595 (1065)
Q Consensus 562 VI~iG~~~~~~~--~~g~~~-~~~-~~~~iI~Vd~d~~ 595 (1065)
||.+|+.+.+.. ...+.. ... ..++++.||+...
T Consensus 149 il~~G~N~~~~~p~~~~~~~~~~~~~g~kli~idp~~~ 186 (375)
T cd02773 149 VLLVGTNPRFEAPVLNARIRKAWLHGGLKVGVIGPPVD 186 (375)
T ss_pred EEEEcCCcchhchHHHHHHHHHHHcCCCEEEEEcCccc
Confidence 999999874321 111111 112 3578999987653
No 388
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=43.76 E-value=3.3e+02 Score=29.28 Aligned_cols=89 Identities=13% Similarity=0.075 Sum_probs=50.8
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCch--------hhhHHHhhcCCc----eEE-EccCCchHHHHHHH-HHHHhCCC
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPV--------IELAMACQQEGI----HYI-GMRNEQAACYAAQA-IGYLTKKP 330 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~--------~~l~~al~~~~i----~~i-~~~~E~~A~~~A~g-~ar~tgkp 330 (1065)
.....+..+++.|.+.|.+++..+-|... ..+.+++++.++ .++ ....+...++-+.- +-+...+|
T Consensus 105 d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 184 (270)
T cd06294 105 DNIQAGYDATEYLIKLGHKKIAFVGGDLDLEVTQDRLQGYKQALEDHGIPDRNEVIISLDFSEEGGYKALKKLLEQHPRP 184 (270)
T ss_pred CcHHHHHHHHHHHHHcCCccEEEecCCcccHHHHHHHHHHHHHHHHcCCCCCcceEEecCCchHHHHHHHHHHHhCCCCC
Confidence 35567788899999999888876644322 122334444442 223 22222223322211 11122368
Q ss_pred eEEEEeccccccccccccccccc
Q psy14416 331 GVCLVVSGPGLLHTFGGMANAQI 353 (1065)
Q Consensus 331 gv~~~tsGpG~~N~~~av~eA~~ 353 (1065)
-+++|.++..+.-++.++.++-.
T Consensus 185 ~ai~~~~d~~a~g~~~al~~~g~ 207 (270)
T cd06294 185 TAIVATDDLLALGVLKVLNELGL 207 (270)
T ss_pred CEEEECChHHHHHHHHHHHHcCC
Confidence 89999888877777777776654
No 389
>PF00766 ETF_alpha: Electron transfer flavoprotein FAD-binding domain; InterPro: IPR014731 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the C-terminal domain of the alpha subunit of both Group I and Group II ETFs.; PDB: 1O96_D 3CLR_D 1O97_D 3CLT_D 3CLU_D 3CLS_D 2A1U_A 2A1T_R 1EFV_A 1EFP_C ....
Probab=43.22 E-value=15 Score=33.84 Aligned_cols=66 Identities=11% Similarity=0.149 Sum_probs=39.0
Q ss_pred CcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCC--CCCCCCCCCcccccHHHHhhhcCCCEEEEeCCccc
Q psy14416 501 APLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPM--GKGVVPDAHPNCVSAARTHALQNADLVLLLGARLN 570 (1065)
Q Consensus 501 rPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~--gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~ 570 (1065)
+.++-+|.|....+..+.+++||+.+|+-+-+|-. -+|.+|.+ ..+|..... -.||+.|.+|.+=.
T Consensus 8 ~~VV~~GrG~~~~e~~~l~~~LA~~lga~vg~SRp~vd~gw~p~~--~qIG~sG~~--v~P~lyia~GISGa 75 (86)
T PF00766_consen 8 EVVVAGGRGVGSKENFELIEELAEALGAAVGASRPVVDAGWIPRE--RQIGQSGKT--VAPKLYIAFGISGA 75 (86)
T ss_dssp SEEEEE-GGG-STGGCHHHHHHHHHHT-EEEE-HHHHHTTSS-GG--GBBSTTSB----T-SEEEEES----
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHHHhCCchhccHHHHhCCCCchh--hhcCCCCcE--EeeeeeEeecchhh
Confidence 34666777877667778999999999999987642 24566543 456654432 38999999997543
No 390
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=43.12 E-value=40 Score=38.11 Aligned_cols=143 Identities=17% Similarity=0.104 Sum_probs=88.1
Q ss_pred CCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeeccccchhhhhhhhhccCCCccc---------ccCccH
Q psy14416 199 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDY---------DEELSA 269 (1065)
Q Consensus 199 p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~~~~l~~~~g~~~~~---------~~~~~~ 269 (1065)
.+..+|++-+|+++.+..-..|++..+|.+= +.|+|. |+ +.|.-..+.-........ ......
T Consensus 88 ~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~-V~iLdG-G~------~~W~~~g~p~~~~~~~~~~~~f~~~~~~~~~~~ 159 (285)
T COG2897 88 RNDDTVVVYDDGGGFFAARAWWLLRYLGHEN-VRILDG-GL------PAWKAAGLPLETEPPEPPPTTFSAKYNVKAVVD 159 (285)
T ss_pred CCCCEEEEECCCCCeehHHHHHHHHHcCCCc-eEEecC-CH------HHHHHcCCCccCCCCCCCCccccccCCccccCC
Confidence 4667777888899999999999999999986 456654 44 344444433221111111 112234
Q ss_pred HHHHHHHHHhcCce--------EEEe------------ecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCC
Q psy14416 270 NQVIAQALKFQGIE--------YVFG------------IVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKK 329 (1065)
Q Consensus 270 ~~~l~~~L~~~GV~--------~vfg------------~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgk 329 (1065)
.+.+++.+...++. ++.| +||..+.|....+.+. .......|...-+...|. -..+
T Consensus 160 ~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~~~--~~~~~~~~~~~l~~~~gi--~~~~ 235 (285)
T COG2897 160 ATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDDG--GLFKSPEEIARLYADAGI--DPDK 235 (285)
T ss_pred HHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhcCC--CccCcHHHHHHHHHhcCC--CCCC
Confidence 46666666666554 4556 6888888887766522 223333344443333333 3578
Q ss_pred CeEEEEeccccccccccccccccc
Q psy14416 330 PGVCLVVSGPGLLHTFGGMANAQI 353 (1065)
Q Consensus 330 pgv~~~tsGpG~~N~~~av~eA~~ 353 (1065)
+.++.|-+|.-+++.+-++.++-.
T Consensus 236 ~vI~yCgsG~~As~~~~al~~lg~ 259 (285)
T COG2897 236 EVIVYCGSGVRASVTWLALAELGG 259 (285)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCC
Confidence 899999999888888777766543
No 391
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=42.93 E-value=43 Score=39.66 Aligned_cols=107 Identities=11% Similarity=0.089 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhC------CCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCC-----CCcccccHHHHh
Q psy14416 486 IAELKQASRLILEA------KAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPD-----AHPNCVSAARTH 554 (1065)
Q Consensus 486 ~~~v~~~ae~L~~A------krPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~-----~hpl~lg~~~~~ 554 (1065)
+++++.+++.|++. +...++.|... .......+.+|++.+|.|.+........... .+. ..+ ....
T Consensus 72 deAl~~ia~~l~~i~~~~G~~~i~~~~~~~~-~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~ 148 (414)
T cd02772 72 ETALEYVAEGLSAIIKKHGADQIGALASPHS-TLEELYLLQKLARGLGSDNIDHRLRQSDFRDDAKASGAP-WLG-MPIA 148 (414)
T ss_pred HHHHHHHHHHHHHHHHhcCcceEEEEecCCC-CcHHHHHHHHHHHHhCCCCccCccccCccchhhhhccCC-CCC-CcHH
Confidence 56777777777654 23334444332 2344567899999999987643211100000 000 111 1233
Q ss_pred hhcCCCEEEEeCCcccccc--ccCCCc-cccCCCeEEEecCChh
Q psy14416 555 ALQNADLVLLLGARLNWIL--HFGRAP-RFKSNVKIIQVDLNAE 595 (1065)
Q Consensus 555 al~~aDlVI~iG~~~~~~~--~~g~~~-~~~~~~~iI~Vd~d~~ 595 (1065)
.+.++|+||.+|+.+.... ...++. ....+.+++.||+...
T Consensus 149 di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~g~k~i~idp~~~ 192 (414)
T cd02772 149 EISELDRVLVIGSNLRKEHPLLAQRLRQAVKKGAKLSAINPADD 192 (414)
T ss_pred HHHhCCEEEEECCCccccchHHHHHHHHHHHcCCEEEEEeCccc
Confidence 5678999999999875322 111211 1124578998998654
No 392
>COG1915 Uncharacterized conserved protein [Function unknown]
Probab=41.68 E-value=28 Score=38.92 Aligned_cols=92 Identities=30% Similarity=0.346 Sum_probs=65.5
Q ss_pred hcCCCEEecCCCCCCCCCCCccccc--------HHHHhhhcCCCEEEEeCCccccccccCCCccccCCCeEEEecCChhh
Q psy14416 525 SFNLPFLPTPMGKGVVPDAHPNCVS--------AARTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEE 596 (1065)
Q Consensus 525 ~lg~PV~tt~~gkg~v~~~hpl~lg--------~~~~~al~~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~ 596 (1065)
+-++|++-.. .+.++-|+--- ..-++.++.+|.||.+-+.+.+..+...++. ..+.|-||.+|..
T Consensus 301 kNniPfvLAG----SIRDDGPlPdvitdvm~Aq~~m~~~l~g~dmvlMlstMLHSIa~GNllPs---~VKtiCVDiNPav 373 (415)
T COG1915 301 KNNIPFVLAG----SIRDDGPLPDVITDVMEAQEEMREHLQGADMVLMLSTMLHSIAVGNLLPS---GVKTICVDINPAV 373 (415)
T ss_pred hcCCCeEEec----ccccCCCCchHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhhcCcchh---hceEEEEecChHH
Confidence 5688887553 34444444211 1235678999999999999988777666543 4577889999975
Q ss_pred cc----cccccceEEEcCHHHHHHHHHHhhc
Q psy14416 597 LH----NSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 597 ~~----~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
.- +...-.+.++.|+..||..|...++
T Consensus 374 VTKL~DRGs~qavgvVTDVGlFlplL~~elk 404 (415)
T COG1915 374 VTKLSDRGSSQAVGVVTDVGLFLPLLVRELK 404 (415)
T ss_pred heecccCCccceeEEEeehhHhHHHHHHHHH
Confidence 53 3344577899999999999988876
No 393
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=41.62 E-value=58 Score=34.74 Aligned_cols=102 Identities=13% Similarity=0.063 Sum_probs=66.2
Q ss_pred ccHHHHHHHHHHhcCceEEEeecCCchhhhHHH--h------hcCCceEEEccCCchHHHHHH--------HHHH---Hh
Q psy14416 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMA--C------QQEGIHYIGMRNEQAACYAAQ--------AIGY---LT 327 (1065)
Q Consensus 267 ~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~a--l------~~~~i~~i~~~~E~~A~~~A~--------g~ar---~t 327 (1065)
...++.+++.|.+.+-=++||+-|+.......+ | .+.+++.+...++..-. .|. -|++ ..
T Consensus 28 ~~a~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~-ta~and~~~~~~f~~ql~~~ 106 (196)
T PRK10886 28 SRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVL-TAIANDRLHDEVYAKQVRAL 106 (196)
T ss_pred HHHHHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHHHH-HHHhccccHHHHHHHHHHHc
Confidence 457788889889989999999988755433222 2 14567777554444322 221 1222 12
Q ss_pred -CCCeEEEEecccc-ccccccccccccccCcceEeecCCCccCC
Q psy14416 328 -KKPGVCLVVSGPG-LLHTFGGMANAQINCWPMLVIGGSCAQDH 369 (1065)
Q Consensus 328 -gkpgv~~~tsGpG-~~N~~~av~eA~~~~vPLlvItg~~p~~~ 369 (1065)
.+--++++-|+.| .-|.+.++..|...+.|+|.||+......
T Consensus 107 ~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~l 150 (196)
T PRK10886 107 GHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGEL 150 (196)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChh
Confidence 2334555555555 66788899999999999999999876554
No 394
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=41.62 E-value=4.4e+02 Score=28.21 Aligned_cols=87 Identities=15% Similarity=0.056 Sum_probs=44.8
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCch---------hhhHHHhhcCCceE----E-EccCCchHHHHHHHHHHHhCCC
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPV---------IELAMACQQEGIHY----I-GMRNEQAACYAAQAIGYLTKKP 330 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~---------~~l~~al~~~~i~~----i-~~~~E~~A~~~A~g~ar~tgkp 330 (1065)
.....+..+++.|.+.|-+++..+-|... ..+..++++.++++ + ....+...++-+.-.-..++.|
T Consensus 99 d~~~~~~~~~~~l~~~g~~~i~~l~~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 178 (268)
T cd06298 99 DYKKAAFEATELLIKNGHKKIAFISGPLEDSINGDERLAGYKEALSEANIEFDESLIFEGDYTYESGYELAEELLEDGKP 178 (268)
T ss_pred CcHHHHHHHHHHHHHcCCceEEEEeCCcccccchhHHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHhcCCCC
Confidence 34567788899999999888777754322 12334455555432 2 2222222332222111122237
Q ss_pred eEEEEeccccccccccccccc
Q psy14416 331 GVCLVVSGPGLLHTFGGMANA 351 (1065)
Q Consensus 331 gv~~~tsGpG~~N~~~av~eA 351 (1065)
.+++|++..-+.-++-++.+.
T Consensus 179 ~ai~~~~d~~a~~~~~~l~~~ 199 (268)
T cd06298 179 TAAFVTDDELAIGILNAAQDA 199 (268)
T ss_pred CEEEEcCcHHHHHHHHHHHHc
Confidence 888887655444444444443
No 395
>cd08663 DAP_dppA_1 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=41.11 E-value=7.5 Score=43.30 Aligned_cols=145 Identities=12% Similarity=-0.014 Sum_probs=79.4
Q ss_pred cHHHHHHHHHHhcCceEEEeecCCchh-hhHHHhhcCCceEEE----------ccCCchHHHHHHHHHHHhCCCeEEEEe
Q psy14416 268 SANQVIAQALKFQGIEYVFGIVGIPVI-ELAMACQQEGIHYIG----------MRNEQAACYAAQAIGYLTKKPGVCLVV 336 (1065)
Q Consensus 268 ~~~~~l~~~L~~~GV~~vfg~pG~~~~-~l~~al~~~~i~~i~----------~~~E~~A~~~A~g~ar~tgkpgv~~~t 336 (1065)
....+.++.+.+.|.+.|...-+...+ .|....-.++.++|. ..||..-+.+=.||.-..|.|..++.|
T Consensus 37 ~evnAaiega~~aGa~eVvV~DsHg~~~Nll~e~L~~~a~LI~G~pkp~~Mm~Gld~~~D~v~fiGYHa~ag~~~gvL~H 116 (266)
T cd08663 37 DEVNAAIEGALEAGATEVLVNDSHGSMRNLLPEDLDPRARLISGSPKPLGMMEGLDEGFDAALFVGYHARAGTPPGVLSH 116 (266)
T ss_pred HHHHHHHHHHHHcCCcEEEEEcCCCCccCcChHHCCccEEEEecCCCCchhhhccccCcCEEEEEecCCCcCCCCCcccc
Confidence 355678888999999999998753332 222221122344442 224444333335544334442333333
Q ss_pred c--ccccccc-cc---------ccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHH
Q psy14416 337 S--GPGLLHT-FG---------GMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHV 404 (1065)
Q Consensus 337 s--GpG~~N~-~~---------av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i 404 (1065)
+ |-...+. ++ .-+-|-.-++||+++|||.-....-..-...+.-+..-+.+.+++....+|+.+.+.|
T Consensus 117 T~s~~~v~~v~iNG~~vgE~glna~~Ag~~gVPV~lVsGDd~~~~ea~~~~p~i~tv~vK~~~gr~aa~~~~p~~a~~~I 196 (266)
T cd08663 117 TYSGGAVRDVRLNGREVGETGLNAAVAGEYGVPVVLVTGDDAACAEARELGPGVETVAVKEAIGRFAARCLPPAEARALI 196 (266)
T ss_pred cccccceEEEEECCEEcCHHHHHHHHHhhcCCCEEEEecCHHHHHHHHhhCCCcEEEEEecccCCCccccCCHHHHHHHH
Confidence 2 3333331 11 1133455689999999998653211111111222233345566777778899999999
Q ss_pred HHHHHHhh
Q psy14416 405 EKAVRLST 412 (1065)
Q Consensus 405 ~~A~~~A~ 412 (1065)
+++.+.|+
T Consensus 197 ~~~a~~Al 204 (266)
T cd08663 197 REAAAEAV 204 (266)
T ss_pred HHHHHHHH
Confidence 98887775
No 396
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=40.98 E-value=57 Score=41.40 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHh------CCCcEEEEccCCCchhHHHHHHHHHhh-cCCCEEecCCCCCCCCC--CCcccccH----HH
Q psy14416 486 IAELKQASRLILE------AKAPLVIIGKGAAYSQAETELLSFVNS-FNLPFLPTPMGKGVVPD--AHPNCVSA----AR 552 (1065)
Q Consensus 486 ~~~v~~~ae~L~~------AkrPvIlvG~g~~~~~a~~~L~~LAe~-lg~PV~tt~~gkg~v~~--~hpl~lg~----~~ 552 (1065)
+++++.+++.|++ .++..++.|.+... .....+.+|++. +|.+.+.....-+..+. .+...+|. ..
T Consensus 71 deAl~~ia~~l~~~~~~~g~~~v~~~~~~~~~~-e~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 149 (671)
T TIGR01591 71 DEAISYIAEKLKEIKEKYGPDSIGFIGSSRGTN-EENYLLQKLARAVIGTNNVDNCARVCHGPSVAGLKQTVGIGAMSNT 149 (671)
T ss_pred HHHHHHHHHHHHHHHHhhCCCeEEEEecCCccc-HHHHHHHHHHHHhcCCccccCCCCceehhhhHHHHHhhCCCCCCCC
Confidence 5677777887773 44566677665432 344578899996 99886543221110000 01111221 11
Q ss_pred HhhhcCCCEEEEeCCccccccc--cCCCc-cccCCCeEEEecCChhhc
Q psy14416 553 THALQNADLVLLLGARLNWILH--FGRAP-RFKSNVKIIQVDLNAEEL 597 (1065)
Q Consensus 553 ~~al~~aDlVI~iG~~~~~~~~--~g~~~-~~~~~~~iI~Vd~d~~~~ 597 (1065)
...+.++|+||.+|+.+..... ..++. ...+.+++|.||+.....
T Consensus 150 ~~di~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvidp~~s~t 197 (671)
T TIGR01591 150 ISEIENADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVIDPRKTET 197 (671)
T ss_pred HHHHHhCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEECCCCChh
Confidence 2346789999999998654221 11211 112467999999876544
No 397
>PRK13937 phosphoheptose isomerase; Provisional
Probab=40.31 E-value=1.3e+02 Score=31.58 Aligned_cols=99 Identities=13% Similarity=0.121 Sum_probs=58.1
Q ss_pred cHHHHHHHHHHhCCCcEEEEeCCCChHHHH--HHH------HhCCCeEEEec-ChhhH---------H-HHHHHHHHhcC
Q psy14416 10 SANQVIAQALKFQGIEYVFGIVGIPVIELA--MAC------QQEGIHYIGMR-NEQAA---------C-YAAQAIGYLTK 70 (1065)
Q Consensus 10 t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~--~al------~~~~i~~v~~r-hE~~A---------~-~mA~gyar~tg 70 (1065)
..++.+++.|++.+-=++||.-++...... ..+ .+.+++.+... +.... . .++.-.+..-.
T Consensus 26 ~aa~~i~~~l~~a~rI~i~G~G~S~~~A~~~a~~~~~~~~~~r~g~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~ 105 (188)
T PRK13937 26 KVAEALIEALANGGKILLCGNGGSAADAQHIAAELVGRFKKERPALPAIALTTDTSALTAIGNDYGFERVFSRQVEALGR 105 (188)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhhccccCCCCCcceEeccCcHHHHHHHhccCCHHHHHHHHHHhhCC
Confidence 457888999999888888887555443221 112 12345555432 21111 1 10111111113
Q ss_pred CcEEEEEeCCcc-hhhhhHHHhhcccCCCcEEEEecCCC
Q psy14416 71 KPGVCLVVSGPG-LLHTFGGMANAQINCWPMLVIGGSCA 108 (1065)
Q Consensus 71 ~~gv~~~t~GPG-~~N~l~gla~A~~~~~Pll~Isg~~~ 108 (1065)
+--++++.|.+| ..+++.++..|+..++|+|.||+...
T Consensus 106 ~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~ 144 (188)
T PRK13937 106 PGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDG 144 (188)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 334666666666 67777888889999999999997543
No 398
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=39.57 E-value=29 Score=40.20 Aligned_cols=111 Identities=17% Similarity=0.150 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhCC-----CcEE-EEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcc---ccc--HHHHh
Q psy14416 486 IAELKQASRLILEAK-----APLV-IIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPN---CVS--AARTH 554 (1065)
Q Consensus 486 ~~~v~~~ae~L~~Ak-----rPvI-lvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl---~lg--~~~~~ 554 (1065)
+++++.+++.|++.+ +.+. +.|.... ......+.+|...+|.+.+.....-+..+....+ ..+ .....
T Consensus 74 deAl~~ia~~l~~~~~~~g~~~i~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (374)
T cd00368 74 DEALDEIAEKLKEIREKYGPDAIAFYGGGGAS-NEEAYLLQKLLRALGSNNVDSHARLCHASAVAALKAFGGGAPTNTLA 152 (374)
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEEEecCCCC-cHHHHHHHHHHHhcCCCccCCCCcccHHHHHHHHHHhCCCCCCCCHH
Confidence 677788888887653 4444 4444332 3334456668888888866543321111100000 001 11223
Q ss_pred hhcCCCEEEEeCCccccccc--cCCCc-cccCCCeEEEecCChhhc
Q psy14416 555 ALQNADLVLLLGARLNWILH--FGRAP-RFKSNVKIIQVDLNAEEL 597 (1065)
Q Consensus 555 al~~aDlVI~iG~~~~~~~~--~g~~~-~~~~~~~iI~Vd~d~~~~ 597 (1065)
.+.++|+||.+|+.+..... ..+.. ...+..+++.||+.....
T Consensus 153 d~~~ad~il~~G~n~~~~~~~~~~~~~~a~~~g~kvv~idp~~s~t 198 (374)
T cd00368 153 DIENADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPRRTET 198 (374)
T ss_pred HHhhCCEEEEEcCChHHhChHHHHHHHHHHHCCCeEEEEcCCCCcc
Confidence 45699999999988743211 11111 112467899999877544
No 399
>PRK13937 phosphoheptose isomerase; Provisional
Probab=39.52 E-value=80 Score=33.23 Aligned_cols=102 Identities=12% Similarity=0.086 Sum_probs=61.7
Q ss_pred cHHHHHHHHHHhcCceEEEeecCCchhhhH--HH------hhcCCceEEEcc-C----------CchHHHHHHHHHHHhC
Q psy14416 268 SANQVIAQALKFQGIEYVFGIVGIPVIELA--MA------CQQEGIHYIGMR-N----------EQAACYAAQAIGYLTK 328 (1065)
Q Consensus 268 ~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~--~a------l~~~~i~~i~~~-~----------E~~A~~~A~g~ar~tg 328 (1065)
..++.+++.|++.+-=++||+-++...... .. +.+.++..+... | +.....++.-.+..-.
T Consensus 26 ~aa~~i~~~l~~a~rI~i~G~G~S~~~A~~~a~~~~~~~~~~r~g~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~ 105 (188)
T PRK13937 26 KVAEALIEALANGGKILLCGNGGSAADAQHIAAELVGRFKKERPALPAIALTTDTSALTAIGNDYGFERVFSRQVEALGR 105 (188)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhhccccCCCCCcceEeccCcHHHHHHHhccCCHHHHHHHHHHhhCC
Confidence 577889999999999999999665432211 11 123466666542 1 1111111111211123
Q ss_pred CCeEEEEecccc-ccccccccccccccCcceEeecCCCccCC
Q psy14416 329 KPGVCLVVSGPG-LLHTFGGMANAQINCWPMLVIGGSCAQDH 369 (1065)
Q Consensus 329 kpgv~~~tsGpG-~~N~~~av~eA~~~~vPLlvItg~~p~~~ 369 (1065)
+--++++-|.+| .-+.+.++..|...++|+|.||+......
T Consensus 106 ~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L 147 (188)
T PRK13937 106 PGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGGKM 147 (188)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCChh
Confidence 335566666665 45667788889999999999999765443
No 400
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=39.30 E-value=79 Score=37.44 Aligned_cols=149 Identities=17% Similarity=0.204 Sum_probs=81.0
Q ss_pred cchhhhhHHHhhcccCC----------CcEEEEecCCCCCcCccCCCc-ccc-----hhhhccccccee-------ccCC
Q psy14416 81 PGLLHTFGGMANAQINC----------WPMLVIGGSCAQDHEGIGGFQ-ECP-----QVELARPYCKYS-------ARPP 137 (1065)
Q Consensus 81 PG~~N~l~gla~A~~~~----------~Pll~Isg~~~~~~~g~~~~Q-~~d-----q~~l~~~itk~~-------~~v~ 137 (1065)
|.++|.+.-++....|+ .|+++.......-+.. ..+| .+. -..+..|..++. -+..
T Consensus 86 PaTanTlaKiA~GiaDnLlt~~~~~~~~plviaPamn~~m~~~-p~~~~Nl~~L~~~G~~vv~P~~g~~ac~~~g~g~~~ 164 (390)
T TIGR00521 86 PATANTISKIAHGIADDLVSTTALAASAPIILAPAMNENMYNN-PAVQENIKRLKDDGYIFIEPDSGLLACGDEGKGRLA 164 (390)
T ss_pred cCCHHHHHHHHcccCCcHHHHHHHHhCCCEEEEeCCChhhcCC-HHHHHHHHHHHHCCcEEECCCCcccccccccCCCCC
Confidence 67777777777666664 6888887543322211 1111 111 123455555444 6677
Q ss_pred CcccHHHHHHHHHHHhhcCCCcccccccCC-------CccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCC
Q psy14416 138 NIHLIGQHVEKAVRLSTFGKPGRSLLLNNL-------PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS 210 (1065)
Q Consensus 138 ~~~~i~~~l~~A~~~A~~~rpGP~~l~~~~-------p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDG 210 (1065)
+++++...+.+.+..-. .-.|..++-+.. |-+++....-|.|| ++++-.+. .-+-+|+++.|.+
T Consensus 165 ~~~~i~~~v~~~~~~~~-~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g----~~~a~~~~----~~Ga~V~~~~g~~ 235 (390)
T TIGR00521 165 EPETIVKAAEREFSPKE-DLEGKRVLITAGPTREPIDPVRFISNLSSGKMG----LALAEAAY----KRGADVTLITGPV 235 (390)
T ss_pred CHHHHHHHHHHHHhhcc-ccCCceEEEecCCccCCCCceeeecCCCcchHH----HHHHHHHH----HCCCEEEEeCCCC
Confidence 77877777777664310 011222222222 44566655556666 55555554 4678999999887
Q ss_pred Cccc----------cHHHH-HHhhhcCCCEEEEEEcCCee
Q psy14416 211 AFGF----------SGMEL-ETLVRYRLPVILVIVNNNGI 239 (1065)
Q Consensus 211 sf~m----------~~~eL-~t~vr~~lpivivV~NN~gy 239 (1065)
+... +.+++ ..+.+.-.+-.-+++||.+-
T Consensus 236 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~i~~Aav 275 (390)
T TIGR00521 236 SLLTPPGVKSIKVSTAEEMLEAALNELAKDFDIFISAAAV 275 (390)
T ss_pred ccCCCCCcEEEEeccHHHHHHHHHHhhcccCCEEEEcccc
Confidence 6542 35666 43443334444567777754
No 401
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=39.30 E-value=74 Score=41.23 Aligned_cols=109 Identities=14% Similarity=0.093 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHh------CCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCC-CCCcc---cccHHHHhh
Q psy14416 486 IAELKQASRLILE------AKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVP-DAHPN---CVSAARTHA 555 (1065)
Q Consensus 486 ~~~v~~~ae~L~~------AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~-~~hpl---~lg~~~~~a 555 (1065)
+++++.+++.|++ .+...++.+.... .+....+.+|++.+|.|.+.......... ..... ..+. ....
T Consensus 290 deAl~~ia~~L~~i~~~~G~~~i~~~~s~~~t-~e~~~~~~~f~~~~Gt~n~~~~~~~~~~~~~~~~~g~~~~~~-~~~D 367 (776)
T PRK09129 290 ETALEYVAEGLKGIIEDHGADQIGALASPHST-LEELYLLQKLARGLGSGNIDHRLRQQDFRDDAAAPGAPWLGM-PIAE 367 (776)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCC-HHHHHHHHHHHHHhCCCccccccCCccccchhhhhcccccCC-CHHH
Confidence 6677777877765 3345555554432 34456789999999987653221100000 00000 0111 2334
Q ss_pred hcCCCEEEEeCCccccccc--cCCCc-cccCCCeEEEecCChhh
Q psy14416 556 LQNADLVLLLGARLNWILH--FGRAP-RFKSNVKIIQVDLNAEE 596 (1065)
Q Consensus 556 l~~aDlVI~iG~~~~~~~~--~g~~~-~~~~~~~iI~Vd~d~~~ 596 (1065)
+.++|+||.+|+.+..... ..++. ......++|.||+....
T Consensus 368 i~~ad~Il~~G~N~~~~~p~~~~~i~~a~~~G~klividpr~t~ 411 (776)
T PRK09129 368 LSNLDAVLVVGSNLRKEHPLLAARLRQAAKNGAKLSAINPVDDD 411 (776)
T ss_pred HHhCCEEEEEecCcchhcHHHHHHHHHHHHCCCeEEEecCCccc
Confidence 6789999999998754321 11111 11245789999986653
No 402
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=38.76 E-value=28 Score=37.44 Aligned_cols=45 Identities=22% Similarity=0.253 Sum_probs=31.8
Q ss_pred hhhcCCCEEEEeCCccccccccCCCcccc-CCCeEEEecCChhhcc
Q psy14416 554 HALQNADLVLLLGARLNWILHFGRAPRFK-SNVKIIQVDLNAEELH 598 (1065)
Q Consensus 554 ~al~~aDlVI~iG~~~~~~~~~g~~~~~~-~~~~iI~Vd~d~~~~~ 598 (1065)
+.+.++|++|.+|+++............. .+.+++.|+.++...+
T Consensus 165 ~~~~~~d~llviGtSl~v~~~~~l~~~~~~~~~~~~~in~~~~~~~ 210 (222)
T cd00296 165 EALLEADLVLVIGTSLTVYPAARLLLRAPERGAPVVIINREPTPAD 210 (222)
T ss_pred HHHhcCCEEEEECCCccccCHHHHHHHHHHCCCcEEEECCCCCCCC
Confidence 44567999999999987654444333222 4678888999987665
No 403
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=38.00 E-value=63 Score=37.30 Aligned_cols=112 Identities=13% Similarity=0.014 Sum_probs=67.3
Q ss_pred ceEE-EccCCchHHHHHHHHHHHhCCCeEEEEe---ccccccccccccccccc-------cCcceEeecCCCccCCCCCC
Q psy14416 305 IHYI-GMRNEQAACYAAQAIGYLTKKPGVCLVV---SGPGLLHTFGGMANAQI-------NCWPMLVIGGSCAQDHEGIG 373 (1065)
Q Consensus 305 i~~i-~~~~E~~A~~~A~g~ar~tgkpgv~~~t---sGpG~~N~~~av~eA~~-------~~vPLlvItg~~p~~~~g~g 373 (1065)
=|++ .-..|+++.-+|.|+|..-.+|.+++-. ...+.=....-+ |+. -++|+++...+-+....| .
T Consensus 51 ~R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~~~~~f~~ra~dQi~~d~--a~~~~~~~~~~~v~vv~~~~~g~~~~~G-~ 127 (327)
T PRK09212 51 KRVIDTPITEHGFAGLAVGAAFAGLRPIVEFMTFNFSMQAIDQIVNSA--AKTNYMSGGQLKCPIVFRGPNGAAARVA-A 127 (327)
T ss_pred CceeecchhHHHHHHHHHHHHHcCCeeEEEeehhhHHHHHHHHHHHHH--HHHhhccCCCcCccEEEEeCCCCCCCCC-c
Confidence 4565 4578999999999999966666665321 112211111211 233 268998876553322211 1
Q ss_pred CC-CccChhhhhcccccEEe-eCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 374 GF-QECPQVELARPYCKYSA-RPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 374 a~-Q~idQ~~l~~~~~k~s~-~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
.+ |.++ .+++.+..... ...++.++...++.|++ . ++||+|-.|..
T Consensus 128 tH~~~~e--a~~r~iP~l~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~ 175 (327)
T PRK09212 128 QHSQCYA--AWYSHIPGLKVVAPYFAADCKGLLKTAIR----D-PNPVIFLENEI 175 (327)
T ss_pred ccccCHH--HHHhcCCCCEEEeeCCHHHHHHHHHHHHh----C-CCcEEEEEchh
Confidence 23 4443 88998877654 45677777777776663 2 58999976654
No 404
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=37.79 E-value=1.2e+02 Score=35.73 Aligned_cols=108 Identities=18% Similarity=0.077 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhC--CCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcc---cccHHHHhhhcCCC
Q psy14416 486 IAELKQASRLILEA--KAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPN---CVSAARTHALQNAD 560 (1065)
Q Consensus 486 ~~~v~~~ae~L~~A--krPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl---~lg~~~~~al~~aD 560 (1065)
+++++.+++.|... ++-.+++|... ..+..-.+++|++.+|...+..-......+..+.. +.....-..++++|
T Consensus 72 ~eAl~~ia~~l~~~~~~~i~~i~g~~~-t~E~~~~lkkl~~~lgs~n~d~~~~~~~~~~~~~~~~~~~~~~sl~die~ad 150 (366)
T cd02774 72 KTAFKFLNKFILLKKFSKLNFIIGSKI-DLETLFYYKKLLNKLGSLNTNSNNFLENNNYFNLDLENYLFNNSLKNLDKSD 150 (366)
T ss_pred HHHHHHHHHHHhhcCcccEEEEECCCC-CHHHHHHHHHHHHHhCCCceeccccccccccccccccCCccCCCHHHHhhCC
Confidence 56677777777654 34456666644 34667789999999999877543221110001111 11122234567999
Q ss_pred EEEEeCCcccccc--ccCCCcc-c-cCCCeEEEecCCh
Q psy14416 561 LVLLLGARLNWIL--HFGRAPR-F-KSNVKIIQVDLNA 594 (1065)
Q Consensus 561 lVI~iG~~~~~~~--~~g~~~~-~-~~~~~iI~Vd~d~ 594 (1065)
+||++|+.+..-. ...++++ . ..+.+++.|++..
T Consensus 151 ~illiG~n~~~e~Pvl~~rlrka~~~~~~ki~vi~~~~ 188 (366)
T cd02774 151 LCLLIGSNLRVESPILNIRLRNRYNKGNKKIFVIGNKF 188 (366)
T ss_pred EEEEEcCCcchhhHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9999998875421 1122211 1 2356888888765
No 405
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=37.09 E-value=41 Score=32.39 Aligned_cols=100 Identities=17% Similarity=0.159 Sum_probs=59.0
Q ss_pred EEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeeccccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCc
Q psy14416 203 VVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGI 282 (1065)
Q Consensus 203 vV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV 282 (1065)
-|++.|-|-. ..+-+.++.+.++..+.|--|-.. . -..++.....+... ........-..+.|++..++.|+
T Consensus 4 kvLIanrGei--a~r~~ra~r~~Gi~tv~v~s~~d~--~---s~~~~~ad~~~~~~-~~~~~~~yl~~e~I~~ia~~~g~ 75 (110)
T PF00289_consen 4 KVLIANRGEI--AVRIIRALRELGIETVAVNSNPDT--V---STHVDMADEAYFEP-PGPSPESYLNIEAIIDIARKEGA 75 (110)
T ss_dssp EEEESS-HHH--HHHHHHHHHHTTSEEEEEEEGGGT--T---GHHHHHSSEEEEEE-SSSGGGTTTSHHHHHHHHHHTTE
T ss_pred EEEEECCCHH--HHHHHHHHHHhCCcceeccCchhc--c---cccccccccceecC-cchhhhhhccHHHHhhHhhhhcC
Confidence 4566777766 567788899988876665444331 1 11122222222211 11122344677889999999999
Q ss_pred eEEEeecC--CchhhhHHHhhcCCceEEEc
Q psy14416 283 EYVFGIVG--IPVIELAMACQQEGIHYIGM 310 (1065)
Q Consensus 283 ~~vfg~pG--~~~~~l~~al~~~~i~~i~~ 310 (1065)
+.+|+--| +....|..++++.|++++..
T Consensus 76 ~~i~pGyg~lse~~~fa~~~~~~gi~fiGp 105 (110)
T PF00289_consen 76 DAIHPGYGFLSENAEFAEACEDAGIIFIGP 105 (110)
T ss_dssp SEEESTSSTTTTHHHHHHHHHHTT-EESSS
T ss_pred cccccccchhHHHHHHHHHHHHCCCEEECc
Confidence 99996555 44455666677788888754
No 406
>PRK09492 treR trehalose repressor; Provisional
Probab=36.88 E-value=3.1e+02 Score=30.63 Aligned_cols=91 Identities=12% Similarity=-0.003 Sum_probs=53.0
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCC--c-------hhhhHHHhhcCCceEEE--ccCCchHHHHHHHHHHHhCCCeEE
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGI--P-------VIELAMACQQEGIHYIG--MRNEQAACYAAQAIGYLTKKPGVC 333 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~--~-------~~~l~~al~~~~i~~i~--~~~E~~A~~~A~g~ar~tgkpgv~ 333 (1065)
.+..++..+++.|.+.|.+++--+-|. . ...+.+++++.|+++.. ...+...++-+. -.....+|-++
T Consensus 158 D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~-~~~l~~~~~ai 236 (315)
T PRK09492 158 DDEGAIKLLMQRLYDQGHRHISYLGVDHSDVTTGKRRHQAYLAFCKQHKLTPVAALGGLSMQSGYELV-AKVLTPETTAL 236 (315)
T ss_pred CcHHHHHHHHHHHHHcCCCeEEEEcCCcccchhHHHHHHHHHHHHHHcCCCceeecCCCCchHHHHHH-HHHhhcCCCEE
Confidence 355677788999999999987655321 1 11234456666765432 222222333221 11234578999
Q ss_pred EEeccccccccccccccccccCc
Q psy14416 334 LVVSGPGLLHTFGGMANAQINCW 356 (1065)
Q Consensus 334 ~~tsGpG~~N~~~av~eA~~~~v 356 (1065)
+|.+-.-+.-++.++.+.-.+.+
T Consensus 237 ~~~~D~~A~g~~~al~~~g~~di 259 (315)
T PRK09492 237 VCATDTLALGASKYLQEQGRDDI 259 (315)
T ss_pred EEcCcHHHHHHHHHHHHcCCCce
Confidence 99888776667666666655433
No 407
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=36.85 E-value=1.3e+02 Score=34.83 Aligned_cols=111 Identities=14% Similarity=0.198 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEccCCCch--------hHHHHHHHHHhhcCCCEEecCC---CCC--------------
Q psy14416 484 PGIAELKQASRLILEAKAPLVIIGKGAAYS--------QAETELLSFVNSFNLPFLPTPM---GKG-------------- 538 (1065)
Q Consensus 484 p~~~~v~~~ae~L~~AkrPvIlvG~g~~~~--------~a~~~L~~LAe~lg~PV~tt~~---gkg-------------- 538 (1065)
-..+.+.++++++++|+-.+|.+|-|...+ .+...+++|-|...|-+...-. -.|
T Consensus 230 vp~~~i~e~a~~mKna~Fg~if~GlGlt~S~gk~rN~e~a~~Lv~~LNe~ak~tli~mrgH~Nv~GFnqv~~~e~GYpf~ 309 (429)
T COG1029 230 VPIEEIEELADMMKNAKFGAIFVGLGLTSSRGKHRNVENAINLVKDLNEYAKFTLIPMRGHYNVTGFNEVLSWETGYPFA 309 (429)
T ss_pred CCHHHHHHHHHHHhcCCcceEEEeeceeecccccccHHHHHHHHHHHhhhceEEEEEeccccccccccchhhhhhCCcee
Confidence 346789999999999999999999887665 2234555565555554442211 000
Q ss_pred -CCCCCCcccc-cH-HHHhhh--cCCCEEEEeCCccccccccCCCccccCCCeEEEecCChh
Q psy14416 539 -VVPDAHPNCV-SA-ARTHAL--QNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAE 595 (1065)
Q Consensus 539 -~v~~~hpl~l-g~-~~~~al--~~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~ 595 (1065)
-|.+.+|.|= |. ...+.| +++|..+.+|+.+..-.-..-. ....+.++|+||+.+.
T Consensus 310 vdF~rG~prynPgE~s~vdlL~~k~vDAalvi~sDp~ah~P~~~~-~~l~eIPvI~iDp~~~ 370 (429)
T COG1029 310 VDFSRGYPRYNPGEFSAVDLLKRKEVDAALVIASDPGAHFPRDAV-EHLAEIPVICIDPHPT 370 (429)
T ss_pred eecccCCcCCCcccccHHHHHhccCCCeEEEEecCccccChHHHH-HHhhcCCEEEecCCCC
Confidence 1222233321 11 123334 5799999999987642110000 1123567888888653
No 408
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=35.45 E-value=3e+02 Score=29.85 Aligned_cols=148 Identities=16% Similarity=0.177 Sum_probs=76.4
Q ss_pred CccHHHHHHHHHHhc--CceEEEeecCCch-------hhhHHHhhcCCceEEEcc--C-CchHHHH-HHHHHHHhCCCeE
Q psy14416 266 ELSANQVIAQALKFQ--GIEYVFGIVGIPV-------IELAMACQQEGIHYIGMR--N-EQAACYA-AQAIGYLTKKPGV 332 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~--GV~~vfg~pG~~~-------~~l~~al~~~~i~~i~~~--~-E~~A~~~-A~g~ar~tgkpgv 332 (1065)
....+...++.|.+. |-+.+.-+-|... ..+.+++++.+++.+... + ....++- ...+-+....+-+
T Consensus 109 ~~~~g~~aa~~l~~~~~g~~~i~~~~g~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a 188 (274)
T cd06311 109 NYGMGRVAGEYIATKLGGNGNIVVLRGIPTPIDNERVDAFDAAIAKYPIKILDRQYANWNRDDAFSVMQDLLTKFPKIDA 188 (274)
T ss_pred cHHHHHHHHHHHHHHhCCCCeEEEEECCCCcchhHHHHHHHHHHhhCCcEEEeccCCCCcHHHHHHHHHHHHHhCCCcCE
Confidence 445667777777776 7666665544321 123333455566655321 1 1111111 1111112345788
Q ss_pred EEEeccccccccccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhccc---ccEEeeCCChhhHHHHHHHHHH
Q psy14416 333 CLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPY---CKYSARPPNIHLIGQHVEKAVR 409 (1065)
Q Consensus 333 ~~~tsGpG~~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~---~k~s~~l~~~~~i~~~i~~A~~ 409 (1065)
++|++..-+..++.++.++-... -+.+++++-..+ ..++.+.- ... ....+|......++.+++
T Consensus 189 i~~~~d~~a~g~~~al~~~g~~~-~~~ivg~d~~~~-----------~~~~i~~g~~~~~~-~v~~~~~~~~~~~~~~~~ 255 (274)
T cd06311 189 VWAHDDDMAVGVLAAIKQAGRTD-IKFVVGGAGSKD-----------MIKMIMDGDPLIPA-DVLYPPSMIASAIDLTVA 255 (274)
T ss_pred EEECCCcHHHHHHHHHHHcCCCC-CceEEEeCCCHH-----------HHHHHHCCCCceeE-EEecCHHHHHHHHHHHHH
Confidence 88887776666666666654432 344454444222 11222211 111 112446666777777777
Q ss_pred HhhcCCCCEEEEecChh
Q psy14416 410 LSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 410 ~A~~~~~GPV~L~iP~D 426 (1065)
.+....++|.++.+|..
T Consensus 256 ~~~g~~~~~~~~~v~~~ 272 (274)
T cd06311 256 LFQGGMPGLGQFIIPAR 272 (274)
T ss_pred HHcCCCCCCcceeccce
Confidence 77777788888877743
No 409
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=34.63 E-value=87 Score=40.43 Aligned_cols=109 Identities=10% Similarity=0.076 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhCC-----CcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCC---CcccccHHHHhhhc
Q psy14416 486 IAELKQASRLILEAK-----APLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDA---HPNCVSAARTHALQ 557 (1065)
Q Consensus 486 ~~~v~~~ae~L~~Ak-----rPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~---hpl~lg~~~~~al~ 557 (1065)
+++++.+++.|++.+ .-+.+.+... .....+.+|+..+|.|-+-.. +..+.... +...+|.....-+.
T Consensus 120 dEAl~~ia~~l~~i~~~~G~~~i~~~~~~~---~~~~~~~~~~~~~Gs~n~~~~-~~~c~~~~~~~~~~~~G~~~~~D~~ 195 (759)
T PRK15488 120 DEAYQEIAAKLNAIKQQHGPESVAFSSKSG---SLSSHLFHLATAFGSPNTFTH-ASTCPAGYAIAAKVMFGGKLKRDLA 195 (759)
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEeecCCC---cHHHHHHHHHHHcCCCCCCCc-cccccchhhhhHHhhcCCCccCCHh
Confidence 567777777765422 1233322111 122357789999998743211 11111100 11222322223567
Q ss_pred CCCEEEEeCCcccccc-c--cCCCcc-c-cCCCeEEEecCChhhcc
Q psy14416 558 NADLVLLLGARLNWIL-H--FGRAPR-F-KSNVKIIQVDLNAEELH 598 (1065)
Q Consensus 558 ~aDlVI~iG~~~~~~~-~--~g~~~~-~-~~~~~iI~Vd~d~~~~~ 598 (1065)
++|+||.+|+.+.... . ..+..+ . .+..++|.||+......
T Consensus 196 ~ad~Il~~G~N~~~~~~~~~~~~~~~a~~~~G~kiivIDPr~s~ta 241 (759)
T PRK15488 196 NSKYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFEPRFSVVA 241 (759)
T ss_pred hCcEEEEeccChHhcCCcHHHHHHHHHHHhCCCEEEEECCCCCcch
Confidence 9999999998864321 1 111111 1 24679999999876554
No 410
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=34.41 E-value=76 Score=39.91 Aligned_cols=113 Identities=16% Similarity=0.068 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhCC------CcEEEEccCCCc--hhHHHHHHHHHhhcCCCEEec-CCCCCCCCCCCcccccH----HH
Q psy14416 486 IAELKQASRLILEAK------APLVIIGKGAAY--SQAETELLSFVNSFNLPFLPT-PMGKGVVPDAHPNCVSA----AR 552 (1065)
Q Consensus 486 ~~~v~~~ae~L~~Ak------rPvIlvG~g~~~--~~a~~~L~~LAe~lg~PV~tt-~~gkg~v~~~hpl~lg~----~~ 552 (1065)
+++++.+++.|++.+ ...+..|.+... ......+.+|++.+|-++... ..+.+......+..+|. ..
T Consensus 81 DeAl~~ia~kl~~i~~~~G~~ai~~~~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~~~~~~~~~~~G~~~~~~~ 160 (617)
T cd02770 81 DEALDTIASELKRIIEKYGNEAIYVNYGTGTYGGVPAGRGAIARLLNLTGGYLNYYGTYSWAQITTATPYTYGAAASGSS 160 (617)
T ss_pred HHHHHHHHHHHHHHHHHhCchheEeeccccccCccccchHHHHHHHHhcCCccCCCCCccHhHHhhhhceEEecCCCCCC
Confidence 567777777776532 223444443321 112356677887777543211 11111101112222331 12
Q ss_pred HhhhcCCCEEEEeCCcccccccc-----CCCccc-cCCCeEEEecCChhhcc
Q psy14416 553 THALQNADLVLLLGARLNWILHF-----GRAPRF-KSNVKIIQVDLNAEELH 598 (1065)
Q Consensus 553 ~~al~~aDlVI~iG~~~~~~~~~-----g~~~~~-~~~~~iI~Vd~d~~~~~ 598 (1065)
..-+.+||+||.+|+.+...... .++... .+..++|.||+......
T Consensus 161 ~~D~~~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~~~G~klivIDPr~t~tA 212 (617)
T cd02770 161 LDDLKDSKLVVLFGHNPAETRMGGGGSTYYYLQAKKAGAKFIVIDPRYTDTA 212 (617)
T ss_pred HHHHhcCCEEEEECCCHHHhcCCCCchHHHHHHHHHcCCeEEEECCCCCccc
Confidence 23457899999999987543221 122111 24579999999875443
No 411
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=34.39 E-value=3.1e+02 Score=33.30 Aligned_cols=149 Identities=15% Similarity=0.172 Sum_probs=84.5
Q ss_pred CCeEEEEe---ccccccccccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHH
Q psy14416 329 KPGVCLVV---SGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVE 405 (1065)
Q Consensus 329 kpgv~~~t---sGpG~~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~ 405 (1065)
.+.+|++- .|-.-..++.-+.... ..+|+|++||.-..+.- .+ .+-.....|-...-+++.+...++
T Consensus 48 ~~~lvl~Di~mp~~~Gl~ll~~i~~~~-~~~pVI~~Tg~g~i~~A----V~-----A~k~GA~Dfl~KP~~~~~L~~~v~ 117 (464)
T COG2204 48 PFDLVLLDIRMPGMDGLELLKEIKSRD-PDLPVIVMTGHGDIDTA----VE-----ALRLGAFDFLEKPFDLDRLLAIVE 117 (464)
T ss_pred CCCEEEEecCCCCCchHHHHHHHHhhC-CCCCEEEEeCCCCHHHH----HH-----HHhcCcceeeeCCCCHHHHHHHHH
Confidence 46776653 2333344555555554 78999999998765421 00 111122223333346889999999
Q ss_pred HHHHHhhcCCCCEEEEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCC
Q psy14416 406 KAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPG 485 (1065)
Q Consensus 406 ~A~~~A~~~~~GPV~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 485 (1065)
+|+..........- ........ .....-.+|.
T Consensus 118 ral~~~~~~~e~~~------~~~~~~~~------------------------------------------~~~liG~S~a 149 (464)
T COG2204 118 RALELRELQRENRR------SLKRAKSL------------------------------------------GGELVGESPA 149 (464)
T ss_pred HHHHHhhhhhhhhh------hhhccccc------------------------------------------cCCceecCHH
Confidence 99987642211100 00000000 0001123455
Q ss_pred HHHHHHHHHHHHhCCCcEEEEccCCCch-hHHHHHHHHHhhcCCCEEecCC
Q psy14416 486 IAELKQASRLILEAKAPLVIIGKGAAYS-QAETELLSFVNSFNLPFLPTPM 535 (1065)
Q Consensus 486 ~~~v~~~ae~L~~AkrPvIlvG~g~~~~-~a~~~L~~LAe~lg~PV~tt~~ 535 (1065)
...+.+.++.+..+.-||+|.|.....- -.+..+.++..+-+-|+++=..
T Consensus 150 m~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNc 200 (464)
T COG2204 150 MQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNC 200 (464)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeec
Confidence 6778888888999999999999743322 2356777888888889886433
No 412
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=33.90 E-value=1.9e+02 Score=37.92 Aligned_cols=95 Identities=13% Similarity=0.208 Sum_probs=54.5
Q ss_pred ccceEEEEeccccccCc-ch---hhHHHhhccCccccCCC---EEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCC
Q psy14416 925 LPVILVIVNNNGIYGGF-DE---TTYASIVESGEVTTVLP---VILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTS 997 (1065)
Q Consensus 925 ~~~~~~~~~gd~~~~~~-~~---~~~~~~~~~~~~~~~~~---~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 997 (1065)
.||+-+++-||.+|-+- -. .+++.+ .+.+ .+-||+||.=-|. + +| .+
T Consensus 646 ~~vlpi~~hGdaafagQGvV~Etlnla~l-------~~y~tGGtIhvivNNqiGft-----------------T-~p-~~ 699 (1228)
T PRK12270 646 FTVLPILLHGDAAFAGQGVVAETLNLSQL-------RGYRTGGTIHIVVNNQVGFT-----------------T-AP-ES 699 (1228)
T ss_pred CceeEEEEeccccccCCchHHHHHHHHhc-------cCCCCCCeEEEEEecCcccc-----------------c-Cc-cc
Confidence 45555688999998311 11 234433 4556 8888899952111 1 11 11
Q ss_pred CCCCccHHHHHHHcCCCeEeeC--CHHHHHHHHHHHH---hcCCCCEEEEEEe
Q psy14416 998 LGPSLRYEKMMAVFGHDGYLCT--TVPQIKQAMKKCL---QTTTRPSLINILI 1045 (1065)
Q Consensus 998 ~~~~~~~~~~~~~~g~~~~~~~--~~~~l~~~~~~~~---~~~~~~~li~~~~ 1045 (1065)
...+.-...+|+++++..+.|+ +++....+.+-|+ +..+++++||+.+
T Consensus 700 ~Rss~y~td~ak~~~~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvc 752 (1228)
T PRK12270 700 SRSSEYATDVAKMIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVC 752 (1228)
T ss_pred cccchhhHHHHhhcCCCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 1122334577888999999885 3333333333332 3348999999998
No 413
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=33.70 E-value=1.8e+02 Score=31.28 Aligned_cols=73 Identities=8% Similarity=0.211 Sum_probs=46.3
Q ss_pred HHHHHHHHHHh-CCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHHHHhhhcCCCEEEEeC
Q psy14416 488 ELKQASRLILE-AKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLLG 566 (1065)
Q Consensus 488 ~v~~~ae~L~~-AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG 566 (1065)
.+..++..+.. ..+-++++|.. ..+...++++|+++|.+.++.-.=.|.+... . ......||+||.+.
T Consensus 54 ~L~~A~~~i~~~~~~~ILfVgTk---~~~~~~v~k~A~~~g~~~v~~RWlgG~LTN~-~-------~~~~~~Pdliiv~d 122 (204)
T PRK04020 54 RIRIAAKFLSRYEPEKILVVSSR---QYGQKPVQKFAEVVGAKAITGRFIPGTLTNP-S-------LKGYIEPDVVVVTD 122 (204)
T ss_pred HHHHHHHHHHHhcCCeEEEEeCC---HHHHHHHHHHHHHhCCeeecCccCCCcCcCc-c-------hhccCCCCEEEEEC
Confidence 44555555544 33446777742 3567899999999999988764433444221 1 12234899999999
Q ss_pred Ccccc
Q psy14416 567 ARLNW 571 (1065)
Q Consensus 567 ~~~~~ 571 (1065)
..-+.
T Consensus 123 p~~~~ 127 (204)
T PRK04020 123 PRGDA 127 (204)
T ss_pred CcccH
Confidence 76654
No 414
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=33.37 E-value=66 Score=37.64 Aligned_cols=110 Identities=15% Similarity=0.123 Sum_probs=66.5
Q ss_pred CceEE-EccCCchHHHHHHHHHHHhCCCeEEEEe---ccccccccccccccccccC--------cceEeecCCCccCCCC
Q psy14416 304 GIHYI-GMRNEQAACYAAQAIGYLTKKPGVCLVV---SGPGLLHTFGGMANAQINC--------WPMLVIGGSCAQDHEG 371 (1065)
Q Consensus 304 ~i~~i-~~~~E~~A~~~A~g~ar~tgkpgv~~~t---sGpG~~N~~~av~eA~~~~--------vPLlvItg~~p~~~~g 371 (1065)
.=|++ .-..|+++.-+|.|+|..-.+|.+.+.. ...+.=..... +-..+ .||+++..+ .. ..+
T Consensus 73 P~R~~d~GIAEq~~vg~AaGlA~~G~~P~v~~~~~~f~~ra~dQi~~d---va~~~~~~~g~~~~pV~i~~~~-G~-~~g 147 (356)
T PLN02683 73 PDRVLDTPITEAGFTGIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINS---AAKTNYMSAGQISVPIVFRGPN-GA-AAG 147 (356)
T ss_pred CCcEEECchhHHHHHHHHHHHHHCCCEEEEEEehhhHHHHHHHHHHHH---HHHhccccCCCccCCEEEEEeC-CC-CCC
Confidence 35666 4578999999999999976676655432 12222222222 22233 899988544 22 222
Q ss_pred CC-CCCccChhhhhcccccEEe-eCCChhhHHHHHHHHHHHhhcCCCCEEEEecC
Q psy14416 372 IG-GFQECPQVELARPYCKYSA-RPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424 (1065)
Q Consensus 372 ~g-a~Q~idQ~~l~~~~~k~s~-~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP 424 (1065)
.| .+|..+ ..+++.+-.+.. ...++.++...++.|++ . +|||+|-.|
T Consensus 148 ~G~tH~~~~-~a~lr~iPnl~V~~Pad~~e~~~~l~~a~~----~-~gPv~ir~~ 196 (356)
T PLN02683 148 VGAQHSQCF-AAWYSSVPGLKVLAPYSSEDARGLLKAAIR----D-PDPVVFLEN 196 (356)
T ss_pred CCCccccCH-HHHHhcCCCCEEEEeCCHHHHHHHHHHHHh----C-CCcEEEEEe
Confidence 23 344455 689998877654 45566666666665542 2 489999754
No 415
>PRK10444 UMP phosphatase; Provisional
Probab=33.23 E-value=3.2e+02 Score=30.13 Aligned_cols=94 Identities=14% Similarity=0.093 Sum_probs=57.8
Q ss_pred EEEEeCCCCccc-------cHHHHHHhhhcCCCEEEEEEcCCeeeeccccchhhhhhhhhccCCCcccccCccHHHHHHH
Q psy14416 203 VVCVQGDSAFGF-------SGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQ 275 (1065)
Q Consensus 203 vV~l~GDGsf~m-------~~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~ 275 (1065)
.+++.-||-+.. ..+.+..+.+.|.| ++++-||... ..-++.+.....|.......-++.+.+.++
T Consensus 3 ~v~~DlDGtL~~~~~~~p~a~~~l~~L~~~g~~-~~~~Tn~~~~------~~~~~~~~l~~~G~~~~~~~i~ts~~~~~~ 75 (248)
T PRK10444 3 NVICDIDGVLMHDNVAVPGAAEFLHRILDKGLP-LVLLTNYPSQ------TGQDLANRFATAGVDVPDSVFYTSAMATAD 75 (248)
T ss_pred EEEEeCCCceEeCCeeCccHHHHHHHHHHCCCe-EEEEeCCCCC------CHHHHHHHHHHcCCCCCHhhEecHHHHHHH
Confidence 455666665543 35555556666666 4556777622 223555555555654444445788899999
Q ss_pred HHHhcCceEEEeecCCchhhhHHHhhcCCce
Q psy14416 276 ALKFQGIEYVFGIVGIPVIELAMACQQEGIH 306 (1065)
Q Consensus 276 ~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~ 306 (1065)
.|++.+-+++|.+ |. ..+.+.+++.|++
T Consensus 76 ~L~~~~~~~v~~~-g~--~~l~~~l~~~g~~ 103 (248)
T PRK10444 76 FLRRQEGKKAYVI-GE--GALIHELYKAGFT 103 (248)
T ss_pred HHHhCCCCEEEEE-cC--HHHHHHHHHCcCE
Confidence 9998765667755 44 3566667666665
No 416
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=33.05 E-value=1.4e+02 Score=33.08 Aligned_cols=61 Identities=11% Similarity=0.239 Sum_probs=41.5
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHHHHhhhcCCCEEEEeCCcccc
Q psy14416 500 KAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNW 571 (1065)
Q Consensus 500 krPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~ 571 (1065)
.+-++++|.. ..+...++++|+++|.+.++.-.-.|.+... ....+..||+||++..+-+.
T Consensus 71 ~~~Il~Vstr---~~~~~~V~k~A~~tg~~~i~~Rw~pGtlTN~--------~~~~f~~P~llIV~Dp~~d~ 131 (249)
T PTZ00254 71 PADVVVVSSR---PYGQRAVLKFAQYTGASAIAGRFTPGTFTNQ--------IQKKFMEPRLLIVTDPRTDH 131 (249)
T ss_pred CCcEEEEEcC---HHHHHHHHHHHHHhCCeEECCcccCCCCCCc--------cccccCCCCEEEEeCCCcch
Confidence 4447788853 3567899999999999987764433444221 11345799999999876553
No 417
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=32.51 E-value=61 Score=39.29 Aligned_cols=135 Identities=17% Similarity=0.110 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhCC------CcEEEEccCCCchhHHHHHH-HHHhhcCCCEEecCCCCCCCCC--CCccccc---HHHH
Q psy14416 486 IAELKQASRLILEAK------APLVIIGKGAAYSQAETELL-SFVNSFNLPFLPTPMGKGVVPD--AHPNCVS---AART 553 (1065)
Q Consensus 486 ~~~v~~~ae~L~~Ak------rPvIlvG~g~~~~~a~~~L~-~LAe~lg~PV~tt~~gkg~v~~--~hpl~lg---~~~~ 553 (1065)
+++++.+++.|++.+ ...++.|.+........... +|+..+|.+.+......+..+. .+...+| ....
T Consensus 76 deAl~~ia~~l~~~~~~~G~~~i~~~~g~~~~~~~~~~~~~~~~~~~~Gs~~~~~~~~~c~~~~~~~~~~~~G~~~~~~~ 155 (477)
T cd02759 76 DEALDEIAEKLAEIKAEYGPESIATAVGTGRGTMWQDSLFWIRFVRLFGSPNLFLSGESCYWPRDMAHALTTGFGLGYDE 155 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEEeccCCCccccchhHHHHHHHHhcCCCcccCCcccchHHHHHHHHHhhccCCCCCc
Confidence 566777777776532 22444454432222122232 6888888875432111000000 0001111 1112
Q ss_pred hhhcCCCEEEEeCCccccccc---cCCCccc-cCCCeEEEecCChhhcccccccceEEE---cCHHHHHHHHHHhh
Q psy14416 554 HALQNADLVLLLGARLNWILH---FGRAPRF-KSNVKIIQVDLNAEELHNSVQAAVAIQ---SDVRLTVQQLKQML 622 (1065)
Q Consensus 554 ~al~~aDlVI~iG~~~~~~~~---~g~~~~~-~~~~~iI~Vd~d~~~~~~~~~~~~~I~---~D~~~~L~~L~~~l 622 (1065)
.-+.++|+||.+|+.+..... ..++.+. ....++|.||+....... ..+..|. +.-..++.+|...+
T Consensus 156 ~d~~~ad~Il~~G~n~~~~~~~~~~~~~~~ar~~g~klividpr~s~ta~--~Ad~~l~i~PGtD~al~~al~~~i 229 (477)
T cd02759 156 PDWENPECIVLWGKNPLNSNLDLQGHWLVAAMKRGAKLIVVDPRLTWLAA--RADLWLPIRPGTDAALALGMLNVI 229 (477)
T ss_pred hhhhcCCEEEEEccChhhhCcHHHHHHHHHHHHCCCEEEEECCCCChhhH--hhCeeeccCCCcHHHHHHHHHHHH
Confidence 345799999999998754321 1122111 245789999998765543 2344443 22234444554444
No 418
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=32.50 E-value=72 Score=36.32 Aligned_cols=57 Identities=25% Similarity=0.396 Sum_probs=35.6
Q ss_pred cEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHHHHhhhcCCCEEEEeCCcc
Q psy14416 502 PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLLGARL 569 (1065)
Q Consensus 502 PvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~ 569 (1065)
-+|+++.... + .-....+||.+++||++++.+. +.+. ....-+-.++|+||.+|...
T Consensus 30 ~VIlvsDn~a--D-~~lA~~iaellNA~Vlttpwg~--ynes------~~~eI~~lnpd~VLIIGGp~ 86 (337)
T COG2247 30 VVILVSDNEA--D-LLLALPIAELLNAPVLTTPWGI--YNES------VLDEIIELNPDLVLIIGGPI 86 (337)
T ss_pred EEEEecchHH--H-HHHhhHHHHHhCCeeEecCccc--ccHH------HHHHHHhhCCceEEEECCCC
Confidence 4555554332 2 2345689999999999998652 2211 11222335899999999765
No 419
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=32.41 E-value=4.7e+02 Score=28.85 Aligned_cols=61 Identities=11% Similarity=0.138 Sum_probs=39.0
Q ss_pred HHHHHHhhhcCCCEEEEEEcCCeeeeccccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCce
Q psy14416 216 GMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIE 283 (1065)
Q Consensus 216 ~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~ 283 (1065)
.+.|..+.+.|.+ ++++-||... ..-++.+.....+.......-++.+..+++.|++.|.+
T Consensus 27 ~~al~~l~~~G~~-~~~~Tn~~~~------~~~~~~~~l~~~g~~~~~~~i~ts~~~~~~~l~~~~~~ 87 (257)
T TIGR01458 27 QEAVKRLRGASVK-VRFVTNTTKE------SKQDLLERLQRLGFDISEDEVFTPAPAARQLLEEKQLR 87 (257)
T ss_pred HHHHHHHHHCCCe-EEEEECCCCC------CHHHHHHHHHHcCCCCCHHHeEcHHHHHHHHHHhcCCC
Confidence 4556677777776 4557788733 11234444444555444555678899999999998865
No 420
>PRK13938 phosphoheptose isomerase; Provisional
Probab=32.40 E-value=2.8e+02 Score=29.53 Aligned_cols=98 Identities=9% Similarity=0.098 Sum_probs=58.5
Q ss_pred cHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC--------CCeEEEecChhhHHHHHHH--------HHH---hc-
Q psy14416 10 SANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE--------GIHYIGMRNEQAACYAAQA--------IGY---LT- 69 (1065)
Q Consensus 10 t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~--------~i~~v~~rhE~~A~~mA~g--------yar---~t- 69 (1065)
..++.+++.|++.|-=++||+-++.......+.+-. .+..+....+ .+-..|.+ |++ ..
T Consensus 33 ~~a~~~~~~l~~g~rI~i~G~G~S~~~A~~fa~~L~~~~~~~r~~lg~~~l~~~-~~~~~a~~nd~~~~~~~~~~~~~~~ 111 (196)
T PRK13938 33 AIGDRLIAGYRAGARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEALHAN-SSHLTAVANDYDYDTVFARALEGSA 111 (196)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHcCCCccCCcCccceEEEeCC-hHHHHHhhccccHHHHHHHHHHhcC
Confidence 457788888988887788998776554433332111 2222222222 22222211 122 12
Q ss_pred CCcEEEEEeCCcc-hhhhhHHHhhcccCCCcEEEEecCCC
Q psy14416 70 KKPGVCLVVSGPG-LLHTFGGMANAQINCWPMLVIGGSCA 108 (1065)
Q Consensus 70 g~~gv~~~t~GPG-~~N~l~gla~A~~~~~Pll~Isg~~~ 108 (1065)
.+--++++.|..| ..+.+.++..|+..+.|+|.||+...
T Consensus 112 ~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 112 RPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 2333566655555 78888999999999999999997554
No 421
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=32.31 E-value=1.1e+02 Score=37.31 Aligned_cols=146 Identities=22% Similarity=0.228 Sum_probs=86.2
Q ss_pred CcchhhhhHHHhhcccC----------CCcEEEEecCCCCCcCccCCCcccch-----hhhccccc--------ceeccC
Q psy14416 80 GPGLLHTFGGMANAQIN----------CWPMLVIGGSCAQDHEGIGGFQECPQ-----VELARPYC--------KYSARP 136 (1065)
Q Consensus 80 GPG~~N~l~gla~A~~~----------~~Pll~Isg~~~~~~~g~~~~Q~~dq-----~~l~~~it--------k~~~~v 136 (1065)
-|.++|.+.-++....| +.|+++.-...+.-+...-..+.+.+ ..+..|.+ -..-+.
T Consensus 153 APATANTIAKiA~GiADnLlt~v~La~~~PvliaPaMN~~M~~npat~~Nl~~L~~~G~~vi~P~~g~lA~~g~~G~Grm 232 (475)
T PRK13982 153 APATADLMAKMANGLADDLASAILLAANRPILLAPAMNPLMWNNPATRRNVAQLKRDGVHMIGPNAGEMAERGEAGVGRM 232 (475)
T ss_pred eeCCHHHHHHHHccccCcHHHHHHHhcCCCEEEEEcCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCccccCCCcCCCCC
Confidence 37888988888888877 78999998776653221100011111 12333332 224466
Q ss_pred CCcccHHHHHHHHHHHh----hcCCC-----cccccccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEe
Q psy14416 137 PNIHLIGQHVEKAVRLS----TFGKP-----GRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQ 207 (1065)
Q Consensus 137 ~~~~~i~~~l~~A~~~A----~~~rp-----GP~~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~ 207 (1065)
..++++...+.+.+... +.++. ||..=+ -.|-+++....-|.|| ++++.++. .-+-.|.++.
T Consensus 233 ~e~~~I~~~v~~~~~~~~~~~l~gkkvLITaGpT~E~-IDpVR~ItN~SSGkmG----~alA~aa~----~~GA~VtlI~ 303 (475)
T PRK13982 233 AEPLEIAAAAEALLRPPQPKPLAGRRVLITAGPTHEP-IDPVRYIANRSSGKQG----FAIAAAAA----AAGAEVTLIS 303 (475)
T ss_pred CCHHHHHHHHHHHHhhccccccCCCEEEEecCCcccc-CCcceeeCCCCchHHH----HHHHHHHH----HCCCcEEEEe
Confidence 77788877777776431 22221 221111 1366677777778888 55544444 4677999999
Q ss_pred CCCCcc----------ccHHHHHHhhhcCCCEEEEEE
Q psy14416 208 GDSAFG----------FSGMELETLVRYRLPVILVIV 234 (1065)
Q Consensus 208 GDGsf~----------m~~~eL~t~vr~~lpivivV~ 234 (1065)
|-.++. -+.+|+..+++..++.=++|+
T Consensus 304 Gp~~~~~p~~v~~i~V~ta~eM~~av~~~~~~Di~I~ 340 (475)
T PRK13982 304 GPVDLADPQGVKVIHVESARQMLAAVEAALPADIAIF 340 (475)
T ss_pred CCcCCCCCCCceEEEecCHHHHHHHHHhhCCCCEEEE
Confidence 987642 136888888877666444444
No 422
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=32.07 E-value=62 Score=40.39 Aligned_cols=109 Identities=13% Similarity=0.118 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhC--CCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCC--CCcccccH----HHHhhhc
Q psy14416 486 IAELKQASRLILEA--KAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPD--AHPNCVSA----ARTHALQ 557 (1065)
Q Consensus 486 ~~~v~~~ae~L~~A--krPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~--~hpl~lg~----~~~~al~ 557 (1065)
+++++.+++.|++. ++.+++.++... .+..-...+|++.+|.+-+.+...-+..+. .....+|. ....-+.
T Consensus 84 DEAl~~IA~kL~~~~~~~~~~y~sg~~s-nE~~~l~q~f~r~lGt~n~~~~s~~C~~~~~~al~~~~G~~~~t~~~~Di~ 162 (574)
T cd02767 84 DEAFAEIAARLRALDPDRAAFYTSGRAS-NEAAYLYQLFARAYGTNNLPDCSNMCHEPSSVGLKKSIGVGKGTVSLEDFE 162 (574)
T ss_pred HHHHHHHHHHHhhhCCCcEEEEecCCCc-cHHHHHHHHHHHHhCCCCcCCCCCCcchHHHhHHHHhcCCCCCCCCHHHHh
Confidence 67788888888765 344454443322 233446788999999876543211110000 01111221 1234567
Q ss_pred CCCEEEEeCCcccccc--ccCCCccc-cCCCeEEEecCChh
Q psy14416 558 NADLVLLLGARLNWIL--HFGRAPRF-KSNVKIIQVDLNAE 595 (1065)
Q Consensus 558 ~aDlVI~iG~~~~~~~--~~g~~~~~-~~~~~iI~Vd~d~~ 595 (1065)
++|+||.+|+.+.... ...++... ...+++|.||+...
T Consensus 163 ~ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~~ 203 (574)
T cd02767 163 HTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLRE 203 (574)
T ss_pred cCCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEECCCcc
Confidence 8999999999875422 11122111 24679999998654
No 423
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=31.89 E-value=2.2e+02 Score=30.42 Aligned_cols=73 Identities=11% Similarity=0.296 Sum_probs=46.2
Q ss_pred HHHHHHHHHHh-CCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHHHHhhhcCCCEEEEeC
Q psy14416 488 ELKQASRLILE-AKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLLG 566 (1065)
Q Consensus 488 ~v~~~ae~L~~-AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG 566 (1065)
.++.+++.+.. +.+-++++|.. ..+...++++|+++|.+.++.-.-.|.+.... ......||+||+++
T Consensus 48 ~L~~A~~~i~~i~~~~ILfVgtk---~~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~--------~~~~~~Pdlliv~d 116 (196)
T TIGR01012 48 RLRVAAKFLVRIEPEDILVVSAR---IYGQKPVLKFAKVTGARAIAGRFTPGTFTNPM--------QKAFREPEVVVVTD 116 (196)
T ss_pred HHHHHHHHHHHhhCCeEEEEecC---HHHHHHHHHHHHHhCCceECCeeCCCCCCCcc--------ccccCCCCEEEEEC
Confidence 34444444332 24557888853 35667899999999999987744335442211 12357899999998
Q ss_pred Ccccc
Q psy14416 567 ARLNW 571 (1065)
Q Consensus 567 ~~~~~ 571 (1065)
..-+.
T Consensus 117 p~~~~ 121 (196)
T TIGR01012 117 PRADH 121 (196)
T ss_pred Ccccc
Confidence 76543
No 424
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=30.95 E-value=50 Score=32.58 Aligned_cols=50 Identities=24% Similarity=0.515 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCC
Q psy14416 484 PGIAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMG 536 (1065)
Q Consensus 484 p~~~~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~g 536 (1065)
-+++.-.+..+.+-+.+-|.||+-.+. ...+.+.++|++.++|++.|...
T Consensus 65 l~~~~r~~~l~~l~~~~~P~iIvt~~~---~~p~~l~e~a~~~~ipll~t~~~ 114 (127)
T PF02603_consen 65 LDEEERKERLEKLFSYNPPCIIVTRGL---EPPPELIELAEKYNIPLLRTPLS 114 (127)
T ss_dssp S-HHHHCCHHHHHCTTT-S-EEEETTT------HHHHHHHHHCT--EEEESS-
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEECcC---CCCHHHHHHHHHhCCcEEEcCCc
Confidence 345566666777777889999988765 34678999999999999988763
No 425
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=30.85 E-value=93 Score=33.09 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHH-hCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecC
Q psy14416 486 IAELKQASRLIL-EAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTP 534 (1065)
Q Consensus 486 ~~~v~~~ae~L~-~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~ 534 (1065)
...+.+++..+. +.+++.++.. ...+.++.++|+.+|+.+|+|++...
T Consensus 15 TTt~aKLAa~~~~~~~~v~lis~-D~~R~ga~eQL~~~a~~l~vp~~~~~ 63 (196)
T PF00448_consen 15 TTTIAKLAARLKLKGKKVALISA-DTYRIGAVEQLKTYAEILGVPFYVAR 63 (196)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEE-STSSTHHHHHHHHHHHHHTEEEEESS
T ss_pred HhHHHHHHHHHhhccccceeecC-CCCCccHHHHHHHHHHHhccccchhh
Confidence 345566665554 4555556554 45567889999999999999998743
No 426
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=30.71 E-value=46 Score=40.07 Aligned_cols=110 Identities=17% Similarity=0.218 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhCC-----CcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCC--Cccc---ccHHHHhh
Q psy14416 486 IAELKQASRLILEAK-----APLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDA--HPNC---VSAARTHA 555 (1065)
Q Consensus 486 ~~~v~~~ae~L~~Ak-----rPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~--hpl~---lg~~~~~a 555 (1065)
+++++.+++.|++.+ +-+++.|+... ....+.+|+..+|.+-+....+-+..+.. .... .+.....-
T Consensus 77 deAl~~ia~~l~~~~~~~G~~~i~~~~~~~~---~~~~~~~~~~~lGt~n~~~~~~~c~~~~~~~~~~~~g~~~~~~~~d 153 (454)
T cd02755 77 DEALQYIASKLKEIKEQHGPESVLFGGHGGC---YSPFFKHFAAAFGSPNIFSHESTCLASKNLAWKLVIDSFGGEVNPD 153 (454)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEecCCc---ccHHHHHHHHHhCCCCCCCccccchhHHHHHHHHHhhccCCCCCcc
Confidence 567777777776532 22343343221 23467888888898744321110000000 0000 11111234
Q ss_pred hcCCCEEEEeCCccccccc---cCCCc-cccCCCeEEEecCChhhcc
Q psy14416 556 LQNADLVLLLGARLNWILH---FGRAP-RFKSNVKIIQVDLNAEELH 598 (1065)
Q Consensus 556 l~~aDlVI~iG~~~~~~~~---~g~~~-~~~~~~~iI~Vd~d~~~~~ 598 (1065)
+.++|+||.+|+.+..... ..++. ...+..++|.||+......
T Consensus 154 ~~~ad~il~~G~n~~~~~~~~~~~~~~~a~~~g~kiivIdPr~t~ta 200 (454)
T cd02755 154 FENARYIILFGRNLAEAIIVVDARRLMKALENGAKVVVVDPRFSELA 200 (454)
T ss_pred hhcCCEEEEECcCcccccccHHHHHHHHHHHCCCeEEEECCCCChhh
Confidence 6799999999998654321 11111 1124579999998765444
No 427
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=30.63 E-value=1.5e+02 Score=27.70 Aligned_cols=78 Identities=15% Similarity=0.137 Sum_probs=47.9
Q ss_pred EEEEccCCCch-hHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHHHHhhhcCCCEEEEeCCccccccccCCCccc
Q psy14416 503 LVIIGKGAAYS-QAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWILHFGRAPRF 581 (1065)
Q Consensus 503 vIlvG~g~~~~-~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~~~~~g~~~~~ 581 (1065)
++-+|.|...+ -+.+.|++.+++.|+.+-.+..+..-+.. ++ ....+.++|+||.+|...... .+|
T Consensus 4 i~ac~~G~a~s~laa~~L~~aa~~~g~~~~ve~~~~~g~~~--~l-----~~~~i~~Ad~vi~~~~~~~~~------~rf 70 (96)
T cd05569 4 VTACPTGIAHTYMAAEALEKAAKKLGWEIKVETQGSLGIEN--EL-----TAEDIAEADAVILAADVPVDD------ERF 70 (96)
T ss_pred EEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecCcCccC--cC-----CHHHHhhCCEEEEecCCCCch------hhh
Confidence 34456666554 45789999999999998866554321111 11 124568999999999865432 123
Q ss_pred cCCCeEEEecCCh
Q psy14416 582 KSNVKIIQVDLNA 594 (1065)
Q Consensus 582 ~~~~~iI~Vd~d~ 594 (1065)
...++++.+.+.
T Consensus 71 -~gk~v~~~~~~~ 82 (96)
T cd05569 71 -AGKRVYEVSVAE 82 (96)
T ss_pred -CCCeEEEecHHH
Confidence 234666665543
No 428
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=30.41 E-value=6.1e+02 Score=26.63 Aligned_cols=87 Identities=15% Similarity=0.089 Sum_probs=44.3
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCch--------hhhHHHhhcCC-ceEEE---ccCCchHHHHHHHHHHHhC--CCe
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPV--------IELAMACQQEG-IHYIG---MRNEQAACYAAQAIGYLTK--KPG 331 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~--------~~l~~al~~~~-i~~i~---~~~E~~A~~~A~g~ar~tg--kpg 331 (1065)
....+..+++.|.+.|.+++..+.+... ..+..++++.+ ++.+. ...+... +.......... ++-
T Consensus 102 ~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 180 (264)
T cd01537 102 NEQAGYLAGEHLAEKGHRRIALLAGPLGSSTARERVAGFKDALKEAGPIEIVLVQEGDWDAEK-GYQAAEELLTAHPDPT 180 (264)
T ss_pred cHHHHHHHHHHHHHhcCCcEEEEECCCCCCcHHHHHHHHHHHHHHcCCcChhhhccCCCCHHH-HHHHHHHHHhcCCCCC
Confidence 3467788999999999998877755322 22333344443 33221 1111111 11122222232 377
Q ss_pred EEEEeccccccccccccccccc
Q psy14416 332 VCLVVSGPGLLHTFGGMANAQI 353 (1065)
Q Consensus 332 v~~~tsGpG~~N~~~av~eA~~ 353 (1065)
+++|+....+..++.++.++-.
T Consensus 181 ~i~~~~~~~a~~~~~~~~~~g~ 202 (264)
T cd01537 181 AIFAANDDMALGALRALREAGL 202 (264)
T ss_pred EEEEcCcHHHHHHHHHHHHhCC
Confidence 7777765544445555555443
No 429
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=30.24 E-value=1.5e+02 Score=34.23 Aligned_cols=77 Identities=14% Similarity=0.226 Sum_probs=49.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-HHH-hhhcCC
Q psy14416 482 PWPGIAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-ART-HALQNA 559 (1065)
Q Consensus 482 ~~p~~~~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-~~~-~al~~a 559 (1065)
-......+.+++.++....+.++++-..--++.+.++|..+++++|+||+.-.. | .+|-.+-- +.. .--+..
T Consensus 149 G~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~--G----~DpAaVafDAi~~Akar~~ 222 (340)
T COG0552 149 GVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKE--G----ADPAAVAFDAIQAAKARGI 222 (340)
T ss_pred CCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCC--C----CCcHHHHHHHHHHHHHcCC
Confidence 344567788888888765555555443455678899999999999999998632 2 33433221 111 123578
Q ss_pred CEEEE
Q psy14416 560 DLVLL 564 (1065)
Q Consensus 560 DlVI~ 564 (1065)
|+||.
T Consensus 223 Dvvli 227 (340)
T COG0552 223 DVVLI 227 (340)
T ss_pred CEEEE
Confidence 88875
No 430
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.23 E-value=6.9e+02 Score=26.57 Aligned_cols=88 Identities=13% Similarity=0.076 Sum_probs=49.1
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchh--------hhHHHhhcCCceEE---EccCCchHHHHHHHHH-HHhCCCeE
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVI--------ELAMACQQEGIHYI---GMRNEQAACYAAQAIG-YLTKKPGV 332 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~--------~l~~al~~~~i~~i---~~~~E~~A~~~A~g~a-r~tgkpgv 332 (1065)
.....+..+++.|.+.|.+++..+.|.... .+.+++.+.+++.. ...++...++-+.-.- +...+|-+
T Consensus 98 d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (266)
T cd06278 98 DNYEAGRLAAELLLAKGCRRIAFIGGPADTSTSRERERGFRDALAAAGVPVVVEEAGDYSYEGGYEAARRLLASRPRPDA 177 (266)
T ss_pred ChHHHHHHHHHHHHHCCCceEEEEcCCCcccchHHHHHHHHHHHHHcCCChhhhccCCCCHHHHHHHHHHHHhcCCCCCE
Confidence 355677788899999999888877664321 23334444555421 1122222222221111 11235788
Q ss_pred EEEecccccccccccccccc
Q psy14416 333 CLVVSGPGLLHTFGGMANAQ 352 (1065)
Q Consensus 333 ~~~tsGpG~~N~~~av~eA~ 352 (1065)
++++++..+.-++.++.++.
T Consensus 178 i~~~~~~~a~~~~~~l~~~~ 197 (266)
T cd06278 178 IFCANDLLAIGVMDAARQEG 197 (266)
T ss_pred EEEcCcHHHHHHHHHHHHhc
Confidence 88888776666666666654
No 431
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=30.03 E-value=87 Score=37.83 Aligned_cols=85 Identities=21% Similarity=0.246 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhh-cCCCEEecCCCCCCCCCCCccc-ccHHHHhhhcCCCEEE
Q psy14416 486 IAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNS-FNLPFLPTPMGKGVVPDAHPNC-VSAARTHALQNADLVL 563 (1065)
Q Consensus 486 ~~~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~-lg~PV~tt~~gkg~v~~~hpl~-lg~~~~~al~~aDlVI 563 (1065)
+++++.+++.|++.+.-+.+.|.+....+....+.+|++. +|.|.+... +........... ........+.++|+||
T Consensus 72 deAl~~ia~~l~~~~~~~~~~~s~~~~~e~~~~~~~~~~~~~gs~~~~~~-~~~~~~~~~~~~~~~~~~~~di~~ad~il 150 (472)
T cd02771 72 NEALDVAAARLKEAKDKVGGIGSPRASNESNYALQKLVGAVLGTNNVDHR-ARRLIAEILRNGPIYIPSLRDIESADAVL 150 (472)
T ss_pred HHHHHHHHHHHHHhhhhEEEEecCCCChHHHHHHHHHHHHhcCCChhhcc-hhhhhhhhhcccCCCCCCHHHHHhCCEEE
Confidence 6788888888888763344444433333444567888875 676654211 111000000000 0011223467999999
Q ss_pred EeCCcccc
Q psy14416 564 LLGARLNW 571 (1065)
Q Consensus 564 ~iG~~~~~ 571 (1065)
.+|+.+..
T Consensus 151 ~~G~n~~~ 158 (472)
T cd02771 151 VLGEDLTQ 158 (472)
T ss_pred EEeCCccc
Confidence 99998754
No 432
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=29.41 E-value=1.3e+02 Score=35.52 Aligned_cols=75 Identities=17% Similarity=0.230 Sum_probs=46.3
Q ss_pred HHHHHHHHHHH--hCCCcEEEEccCCCchhHHHHHHHHHhhcCCC--EEecCCCCCCCCCCCccc-ccHHHHhh--hcCC
Q psy14416 487 AELKQASRLIL--EAKAPLVIIGKGAAYSQAETELLSFVNSFNLP--FLPTPMGKGVVPDAHPNC-VSAARTHA--LQNA 559 (1065)
Q Consensus 487 ~~v~~~ae~L~--~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~P--V~tt~~gkg~v~~~hpl~-lg~~~~~a--l~~a 559 (1065)
..++++.+.+. ..||++||.+.+....+..+.+.+..+..++. ||..... +|-. .-....+. -.+|
T Consensus 15 g~l~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p-------~P~~~~v~~~~~~~~~~~~ 87 (377)
T COG1454 15 GSLKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEP-------EPTIETVEAGAEVAREFGP 87 (377)
T ss_pred ChHHHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCC-------CCCHHHHHHHHHHHHhcCC
Confidence 34555555655 45899999999876666777888888888855 4443322 1211 01111122 2489
Q ss_pred CEEEEeCCc
Q psy14416 560 DLVLLLGAR 568 (1065)
Q Consensus 560 DlVI~iG~~ 568 (1065)
|.||.+|.-
T Consensus 88 D~iIalGGG 96 (377)
T COG1454 88 DTIIALGGG 96 (377)
T ss_pred CEEEEeCCc
Confidence 999999954
No 433
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=29.39 E-value=1.7e+02 Score=34.15 Aligned_cols=36 Identities=11% Similarity=0.141 Sum_probs=29.5
Q ss_pred HHHHH-HcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEE
Q psy14416 1005 EKMMA-VFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLI 1041 (1065)
Q Consensus 1005 ~~~~~-~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li 1041 (1065)
..+.. .=|..-+...+..|++..++.++.. ++|+.|
T Consensus 157 ~a~lr~iPnl~V~~Pad~~e~~~~l~~a~~~-~gPv~i 193 (356)
T PLN02683 157 AAWYSSVPGLKVLAPYSSEDARGLLKAAIRD-PDPVVF 193 (356)
T ss_pred HHHHhcCCCCEEEEeCCHHHHHHHHHHHHhC-CCcEEE
Confidence 34444 4588899999999999999999976 789877
No 434
>PRK09939 putative oxidoreductase; Provisional
Probab=29.37 E-value=46 Score=42.89 Aligned_cols=110 Identities=13% Similarity=0.155 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhCCCc--EEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCC--CcccccH----HHHhhhc
Q psy14416 486 IAELKQASRLILEAKAP--LVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDA--HPNCVSA----ARTHALQ 557 (1065)
Q Consensus 486 ~~~v~~~ae~L~~AkrP--vIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~--hpl~lg~----~~~~al~ 557 (1065)
+++++.+++.|+..+.| +.+.+++....++.-.+.+|+..+|-+-+.+...-+.-+.. ....+|. ....-+.
T Consensus 128 dEAl~~Ia~~L~~i~~p~~i~~y~sg~~snE~~yl~q~f~r~~Gtnn~~~~s~~C~~~~~~~l~~~~G~g~~t~~l~Di~ 207 (759)
T PRK09939 128 QQAFDEIGARLQSYSDPNQVEFYTSGRTSNEAAFLYQLFAREYGSNNFPDCSNMCHEPTSVGLAASIGVGKGTVLLEDFE 207 (759)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeeCCchHHHHHHHHHHHHHhCCcccCCCCCCCchHHHHHHHHhcCCCCCCCCHHHHh
Confidence 67788888888775445 33333333222334467888888888766432211100000 0011221 1223467
Q ss_pred CCCEEEEeCCcccccc--ccCCCccc-cCCCeEEEecCChh
Q psy14416 558 NADLVLLLGARLNWIL--HFGRAPRF-KSNVKIIQVDLNAE 595 (1065)
Q Consensus 558 ~aDlVI~iG~~~~~~~--~~g~~~~~-~~~~~iI~Vd~d~~ 595 (1065)
+||+||.+|+.+.... ...++... ...+++|.||+...
T Consensus 208 ~ad~Ili~G~Np~~~hP~~~~~l~~a~~rGakiIvIDPr~~ 248 (759)
T PRK09939 208 KCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQE 248 (759)
T ss_pred hCCEEEEeCCChHHHHHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 9999999999875422 11122111 24579999998553
No 435
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=28.59 E-value=4.9e+02 Score=27.85 Aligned_cols=85 Identities=15% Similarity=0.092 Sum_probs=44.8
Q ss_pred ccHHHHHHHHHHhcCceEEEeecCCch--------hhhHHHhhcCCce----EEE-ccCCchHHHHHHHHHHHhCCCeEE
Q psy14416 267 LSANQVIAQALKFQGIEYVFGIVGIPV--------IELAMACQQEGIH----YIG-MRNEQAACYAAQAIGYLTKKPGVC 333 (1065)
Q Consensus 267 ~~~~~~l~~~L~~~GV~~vfg~pG~~~--------~~l~~al~~~~i~----~i~-~~~E~~A~~~A~g~ar~tgkpgv~ 333 (1065)
..+...+++.|.+.|.+++-.+-|... ..+.+++++.+++ ++. .......++-+ ........|.++
T Consensus 101 ~~~~~~~~~~l~~~g~~~I~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~av 179 (265)
T cd06299 101 QPGMTEAVSLLVALGHKKIGYISGPQDTSTGRERLEAFRQACASLGLEVNEDLVVLGGYSQESGYAG-ATKLLDQGATAI 179 (265)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEeCCCCcccHHHHHHHHHHHHHHCCCCCChHhEEecCcchHHHHHH-HHHHHcCCCCEE
Confidence 345667788888889888766544332 1233445554422 222 12122111111 111222238888
Q ss_pred EEecccccccccccccccc
Q psy14416 334 LVVSGPGLLHTFGGMANAQ 352 (1065)
Q Consensus 334 ~~tsGpG~~N~~~av~eA~ 352 (1065)
+|++...+.-++.++.++-
T Consensus 180 ~~~~d~~a~gv~~al~~~g 198 (265)
T cd06299 180 IAGDSMMTIGAIRAIHDAG 198 (265)
T ss_pred EEcCcHHHHHHHHHHHHhC
Confidence 9988877666666666544
No 436
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=28.34 E-value=2e+02 Score=29.72 Aligned_cols=101 Identities=18% Similarity=0.187 Sum_probs=56.6
Q ss_pred cHHHHHHHHHHhcCceEEEeecCCchhhhHHH--hh------cCCceEEEccCCch---H--------HHHHHHHHHHhC
Q psy14416 268 SANQVIAQALKFQGIEYVFGIVGIPVIELAMA--CQ------QEGIHYIGMRNEQA---A--------CYAAQAIGYLTK 328 (1065)
Q Consensus 268 ~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~a--l~------~~~i~~i~~~~E~~---A--------~~~A~g~ar~tg 328 (1065)
..++.|++++.+.+-=++||+-++.......+ +. +.++.++...++.. + ..++.-.+..-.
T Consensus 21 ~a~~~i~~~i~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (177)
T cd05006 21 QAAQLLAEALLNGGKILICGNGGSAADAQHFAAELVKRFEKERPGLPAIALTTDTSILTAIANDYGYEEVFSRQVEALGQ 100 (177)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhchhccCCCCCceEeccCCHHHHHHHhccCCHHHHHHHHHHHhCC
Confidence 45666777766677778888765544332211 22 23555554332111 1 111111122123
Q ss_pred CCeEEEEecccc-ccccccccccccccCcceEeecCCCccC
Q psy14416 329 KPGVCLVVSGPG-LLHTFGGMANAQINCWPMLVIGGSCAQD 368 (1065)
Q Consensus 329 kpgv~~~tsGpG-~~N~~~av~eA~~~~vPLlvItg~~p~~ 368 (1065)
+--++++-|-.| .-+.+.++..|...++|+|.||+.....
T Consensus 101 ~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~ 141 (177)
T cd05006 101 PGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGK 141 (177)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 334555555444 4588899999999999999999986444
No 437
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=27.84 E-value=3.2e+02 Score=30.50 Aligned_cols=146 Identities=14% Similarity=0.060 Sum_probs=71.1
Q ss_pred CCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeeccccchhhhhhhhhccCCCcccccCccHHHHHHHHHHh
Q psy14416 200 GKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKF 279 (1065)
Q Consensus 200 ~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~ 279 (1065)
+.+|..++|-.+.......+..+.+.++|++.+ +.. .. .. . ....+.++. .......+..+++.|++
T Consensus 64 ~~~v~~vig~~~s~~~~~~~~~~~~~~vP~v~~--~~~---~~-~~---~-~~~~~~~~~---~~~~~~~~~~~~~~l~~ 130 (312)
T cd06333 64 EDKVDAIIGPSTTPATMAVAPVAEEAKTPMISL--APA---AA-IV---E-PKRKWVFKT---PQNDRLMAEAILADMKK 130 (312)
T ss_pred hCCeEEEECCCCCHHHHHHHHHHHhcCCCEEEc--cCC---cc-cc---C-CCCCcEEEc---CCCcHHHHHHHHHHHHH
Confidence 457888888654432333445667888987654 211 00 00 0 000111211 12234567788899999
Q ss_pred cCceEEEeecCCchh------hhHHHhhcCCceEEEc--cCCchHHHHHHHHHHH-hCCCeEEEEec-cccccccccccc
Q psy14416 280 QGIEYVFGIVGIPVI------ELAMACQQEGIHYIGM--RNEQAACYAAQAIGYL-TKKPGVCLVVS-GPGLLHTFGGMA 349 (1065)
Q Consensus 280 ~GV~~vfg~pG~~~~------~l~~al~~~~i~~i~~--~~E~~A~~~A~g~ar~-tgkpgv~~~ts-GpG~~N~~~av~ 349 (1065)
.|.+++..+-+.... .+..++++.|++++.. .+....-+.+. +.++ ..+|-+++|.+ +..+..++..+.
T Consensus 131 ~g~~~vail~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~-~~~l~~~~pdaIi~~~~~~~~~~~~~~l~ 209 (312)
T cd06333 131 RGVKTVAFIGFSDAYGESGLKELKALAPKYGIEVVADERYGRTDTSVTAQ-LLKIRAARPDAVLIWGSGTPAALPAKNLR 209 (312)
T ss_pred cCCCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCcCHHHH-HHHHHhCCCCEEEEecCCcHHHHHHHHHH
Confidence 999998877543221 1223345566665421 11111122222 2332 44577777764 444444554444
Q ss_pred cccccCcceEe
Q psy14416 350 NAQINCWPMLV 360 (1065)
Q Consensus 350 eA~~~~vPLlv 360 (1065)
+.- =++|++.
T Consensus 210 ~~g-~~~p~~~ 219 (312)
T cd06333 210 ERG-YKGPIYQ 219 (312)
T ss_pred HcC-CCCCEEe
Confidence 332 2355543
No 438
>KOG0781|consensus
Probab=27.35 E-value=1.2e+02 Score=36.47 Aligned_cols=46 Identities=17% Similarity=0.136 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcC
Q psy14416 482 PWPGIAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFN 527 (1065)
Q Consensus 482 ~~p~~~~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg 527 (1065)
-......+.+++=+|...+--|+|++-..-++++.++|+--+|++.
T Consensus 388 GVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~ 433 (587)
T KOG0781|consen 388 GVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLS 433 (587)
T ss_pred CccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHH
Confidence 3345667888888888888888888866677899999999999983
No 439
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=27.30 E-value=4.2e+02 Score=28.07 Aligned_cols=89 Identities=13% Similarity=0.053 Sum_probs=49.0
Q ss_pred ccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEE-EeCC-c-chhh
Q psy14416 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCL-VVSG-P-GLLH 85 (1065)
Q Consensus 9 ~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~-~t~G-P-G~~N 85 (1065)
...++.+++.+++.||+.++.+-|-.... .+...+...+.+..... ..-+..| +-+ .-.| + |++.
T Consensus 33 ~e~a~~vld~a~~~gv~~iitLgG~~~~~-----~~trp~V~~~at~~el~----~~l~~~g---~~~~~~~g~i~G~~g 100 (188)
T TIGR00162 33 YELVNAIIDVAKKYGARMIYTLGGYGVGK-----LVEEPYVYGAATSPELV----EELKEHG---VKFREPGGGIIGASG 100 (188)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCcCCC-----CCCCCceEEEeCCHHHH----HHHHhcC---CeeecCCCccccHHH
Confidence 35789999999999999999998854421 11123344444433321 1111111 111 1111 1 2222
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCc
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDH 111 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~ 111 (1065)
++ +..|...++|-+.|.+.++...
T Consensus 101 lL--l~~a~~~gi~ai~L~~e~p~y~ 124 (188)
T TIGR00162 101 LL--LGVSELEGIPGACLMGETPGYM 124 (188)
T ss_pred HH--HHHHHHCCCCeEEEEEeCCCCC
Confidence 22 2346788899999988887643
No 440
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=27.23 E-value=7.5e+02 Score=26.00 Aligned_cols=88 Identities=14% Similarity=0.124 Sum_probs=45.9
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchh--------hhHHHhhcCCc--e--EEEccCCc-hHHHHH-HHHHHHhCCCe
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVI--------ELAMACQQEGI--H--YIGMRNEQ-AACYAA-QAIGYLTKKPG 331 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~--------~l~~al~~~~i--~--~i~~~~E~-~A~~~A-~g~ar~tgkpg 331 (1065)
....+..+++.|.+.|.+++.-+-|.... .+.+.+.+.++ . .+...+.. ..++.+ .-+-+...++-
T Consensus 100 ~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (264)
T cd06267 100 NRAGAYLAVEHLIELGHRRIAFIGGPPDLSTARERLEGYREALEEAGIPLDEELIVEGDFSEESGYEAARELLASGERPT 179 (264)
T ss_pred cHHHHHHHHHHHHHCCCceEEEecCCCccchHHHHHHHHHHHHHHcCCCCCcceEEecccchhhHHHHHHHHHhcCCCCc
Confidence 45677888899998898887776554331 12233444442 1 22222221 121211 11222223477
Q ss_pred EEEEeccccccccccccccccc
Q psy14416 332 VCLVVSGPGLLHTFGGMANAQI 353 (1065)
Q Consensus 332 v~~~tsGpG~~N~~~av~eA~~ 353 (1065)
++++.++..+..++.++.++-.
T Consensus 180 ~i~~~~~~~a~~~~~al~~~g~ 201 (264)
T cd06267 180 AIFAANDLMAIGALRALRELGL 201 (264)
T ss_pred EEEEcCcHHHHHHHHHHHHhCC
Confidence 7777766656666666666554
No 441
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=27.12 E-value=8.5e+02 Score=27.20 Aligned_cols=85 Identities=15% Similarity=0.087 Sum_probs=44.0
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCch---------hhhHHHhhcCCceE----EE-ccCCchHHHHHHHHHHHhCCC
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPV---------IELAMACQQEGIHY----IG-MRNEQAACYAAQAIGYLTKKP 330 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~---------~~l~~al~~~~i~~----i~-~~~E~~A~~~A~g~ar~tgkp 330 (1065)
....++..+++.|.+.|-+++.-+-|... ..+.+++++.++.+ +. .......++-+. -.....+|
T Consensus 159 D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~-~~ll~~~p 237 (329)
T TIGR01481 159 DYKQATKEAVGELIAKGHKSIAFVGGPLSDSINGEDRLEGYKEALNKAGIQFGEDLVCEGKYSYDAGYKAF-AELKGSLP 237 (329)
T ss_pred CcHHHHHHHHHHHHHCCCCeEEEEecCcccccchHHHHHHHHHHHHHcCCCCCcceEEecCCChHHHHHHH-HHHhCCCC
Confidence 34567778899999999988765533221 12334455555432 21 211222222221 11233468
Q ss_pred eEEEEecccccccccccccc
Q psy14416 331 GVCLVVSGPGLLHTFGGMAN 350 (1065)
Q Consensus 331 gv~~~tsGpG~~N~~~av~e 350 (1065)
-+++|.+..-+.-++.++.+
T Consensus 238 ~ai~~~~d~~A~g~~~al~~ 257 (329)
T TIGR01481 238 TAVFVASDEMAAGILNAAMD 257 (329)
T ss_pred CEEEEcCcHHHHHHHHHHHH
Confidence 88888776544444444444
No 442
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=26.92 E-value=48 Score=31.03 Aligned_cols=60 Identities=20% Similarity=0.315 Sum_probs=40.3
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHHHHhhhcCCCEEEEeCCcccc
Q psy14416 499 AKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNW 571 (1065)
Q Consensus 499 AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~ 571 (1065)
.++.++++|.|...+-..+.+++++++.|+++-.+..+-+ .......++|+| .++..+.+
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~------------~~~~~~~~~Dvi-ll~pqi~~ 62 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYG------------AAGEKLDDADVV-LLAPQVAY 62 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHH------------HHHhhcCCCCEE-EECchHHH
Confidence 4678999999988777788999999999999754332211 111234578954 45665543
No 443
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=25.79 E-value=2.1e+02 Score=33.34 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=15.9
Q ss_pred CccHHHHHHHcCCCeEeeCC--HHHHHHH
Q psy14416 1001 SLRYEKMMAVFGHDGYLCTT--VPQIKQA 1027 (1065)
Q Consensus 1001 ~~~~~~~~~~~g~~~~~~~~--~~~l~~~ 1027 (1065)
+-+...+-+.||.+-+.|+. .+++.+.
T Consensus 215 ~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ 243 (379)
T PF09364_consen 215 DEELEALFRGYGYEPIFVEGDDPADMHQA 243 (379)
T ss_dssp HHHHHHHHHHTTEEEEEEE---HHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEecCCHHHHHHH
Confidence 34466777778877777766 3344443
No 444
>PRK13761 hypothetical protein; Provisional
Probab=25.65 E-value=89 Score=33.86 Aligned_cols=132 Identities=18% Similarity=0.247 Sum_probs=78.7
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCC---------------C---CCCCC-
Q psy14416 483 WPGIAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGK---------------G---VVPDA- 543 (1065)
Q Consensus 483 ~p~~~~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gk---------------g---~v~~~- 543 (1065)
.+..++.+.++..|..|++|||=+-+... .-..+++.+|++.+++++=...+-+ | ++..+
T Consensus 51 ~~A~~A~raAaA~LLlA~~PVISVNGN~A-AL~p~eiveLa~~~~A~iEVNLF~RT~eR~~~I~~~l~~~Ga~~vlG~~~ 129 (248)
T PRK13761 51 PSALEAERAAAALLLLAKHPVISVNGNTA-ALVPEEIVELAEALNAKLEVNLFYRTEERVEKIAEVLREHGAKEVLGTDE 129 (248)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEcchHH-hhChHHHHHHHHHhCCCEEEEeccCCHHHHHHHHHHHHHcCCceeeCCCC
Confidence 34567778888899999999998876543 2346889999999999987665432 1 11110
Q ss_pred Cccccc--H----HHHhhhcCCCEEEEeCCccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHH
Q psy14416 544 HPNCVS--A----ARTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQ 617 (1065)
Q Consensus 544 hpl~lg--~----~~~~al~~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~ 617 (1065)
.....+ . ...+-+..||+|++ .+.+-.-..-+. .-.+++|-||.+|-. ......++.|+-++--.+..
T Consensus 130 ~~~ip~L~~~R~~v~~~GIy~ADVVLV---PLEDGDR~EaL~--~mGK~VI~IDLNPLS-RTar~A~itIVDni~RA~p~ 203 (248)
T PRK13761 130 DARIPGLDHERAKVSEDGIYSADVVLV---PLEDGDRTEALV--KMGKTVIAIDLNPLS-RTARTATITIVDNITRAVPN 203 (248)
T ss_pred cCcCCCCCCccceECcccceeccEEEe---cCCCCcHHHHHH--HcCCeEEEEeCCCcc-cccccCceeeehhHHHHHHH
Confidence 000000 0 11223457888875 332211111111 135678999999953 33456788888777666665
Q ss_pred HHHh
Q psy14416 618 LKQM 621 (1065)
Q Consensus 618 L~~~ 621 (1065)
+.+.
T Consensus 204 m~~~ 207 (248)
T PRK13761 204 MTEY 207 (248)
T ss_pred HHHH
Confidence 5544
No 445
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=25.42 E-value=8.4e+02 Score=25.95 Aligned_cols=87 Identities=17% Similarity=0.107 Sum_probs=44.6
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCch--------hhhHHHhhcCCce----EE-EccCCchHHHHHH-HHHHHhCCC
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPV--------IELAMACQQEGIH----YI-GMRNEQAACYAAQ-AIGYLTKKP 330 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~--------~~l~~al~~~~i~----~i-~~~~E~~A~~~A~-g~ar~tgkp 330 (1065)
.....+...++.|.+.|.+++..+-|... ..+.+++++.++. .+ .+......++-+. .+-....+|
T Consensus 103 d~~~~~~~a~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (268)
T cd06271 103 DNEAAAYQAVRRLIALGHRRIALLNPPEDLTFAQHRRAGYRRALAEAGLPLDPALIVSGDMTEEGGYAAAAELLALPDRP 182 (268)
T ss_pred CcHHHHHHHHHHHHHcCCCcEEEecCccccchHHHHHHHHHHHHHHhCCCCCCceEEeCCCChHHHHHHHHHHHhCCCCC
Confidence 34567778888999999998877655322 1233344444432 22 2222222222211 111122458
Q ss_pred eEEEEeccccccccccccccc
Q psy14416 331 GVCLVVSGPGLLHTFGGMANA 351 (1065)
Q Consensus 331 gv~~~tsGpG~~N~~~av~eA 351 (1065)
.+++|.+..-+.-++.++.+.
T Consensus 183 ~ai~~~~d~~a~g~~~al~~~ 203 (268)
T cd06271 183 TAIVCSSELMALGVLAALAEA 203 (268)
T ss_pred CEEEEcCcHHHHHHHHHHHHh
Confidence 888887665444444444443
No 446
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=24.84 E-value=1.7e+02 Score=35.71 Aligned_cols=136 Identities=10% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHh------CCCcEEEEccCCCchhHHHHHHHHHhhcCC-CEEecCCCCCCCCCCCcc------cccHHH
Q psy14416 486 IAELKQASRLILE------AKAPLVIIGKGAAYSQAETELLSFVNSFNL-PFLPTPMGKGVVPDAHPN------CVSAAR 552 (1065)
Q Consensus 486 ~~~v~~~ae~L~~------AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~-PV~tt~~gkg~v~~~hpl------~lg~~~ 552 (1065)
+++++.+++.|++ .++..++.|.+.. ......+.+|++.++. +.+......+..+....+ ......
T Consensus 72 deAl~~ia~~l~~~~~~~g~~~v~~~~~~~~~-~e~~~~~~~~~~~~g~s~~~~~~~~~c~~~~~~~~~~~~G~~~~~~~ 150 (512)
T cd02753 72 DEALSLVASRLKEIKDKYGPDAIAFFGSAKCT-NEENYLFQKLARAVGGTNNVDHCARLCHSPTVAGLAETLGSGAMTNS 150 (512)
T ss_pred HHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC-cHHHHHHHHHHHHhcCCCccCCCcccccchhhHHHHhhcCCCCCCCC
Q ss_pred HhhhcCCCEEEEeCCccccccccCCCc---cccCCCeEEEecCChhhcccccccceEE-EcCHHHHHHHHHHhh
Q psy14416 553 THALQNADLVLLLGARLNWILHFGRAP---RFKSNVKIIQVDLNAEELHNSVQAAVAI-QSDVRLTVQQLKQML 622 (1065)
Q Consensus 553 ~~al~~aDlVI~iG~~~~~~~~~g~~~---~~~~~~~iI~Vd~d~~~~~~~~~~~~~I-~~D~~~~L~~L~~~l 622 (1065)
...+.++|+||.+|+.+.......+.. ......++|.||+........-..-+.+ -+.-..++-+|...+
T Consensus 151 ~~d~~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~k~i~Idp~~s~ta~~Ad~~l~i~PGtD~al~lal~~~l 224 (512)
T cd02753 151 IADIEEADVILVIGSNTTEAHPVIARRIKRAKRNGAKLIVADPRRTELARFADLHLQLRPGTDVALLNAMAHVI 224 (512)
T ss_pred HHHHHhCCEEEEECCChhhhhHHHHHHHHHHHHCCCeEEEEcCCCccchHhhCeeeCCCCCcHHHHHHHHHHHH
No 447
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=24.52 E-value=8.5e+02 Score=25.88 Aligned_cols=87 Identities=16% Similarity=0.131 Sum_probs=45.8
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCch---------hhhHHHhhcCC----ceEEEccCCc-hHHHHHHHHHHH-h-C
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPV---------IELAMACQQEG----IHYIGMRNEQ-AACYAAQAIGYL-T-K 328 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~---------~~l~~al~~~~----i~~i~~~~E~-~A~~~A~g~ar~-t-g 328 (1065)
.....+..+++.|.+.|-+++.-+-|... ..+.+++++.+ .+++...+.. ..++-+ ..... + .
T Consensus 99 d~~~~g~~~~~~l~~~g~~~i~~l~~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~ 177 (267)
T cd06283 99 DNYEAAKEAVDHLIEKGYERILFVTEPLDEISPRMERYEGFKEALAEHGIGVNEELIEIDDEDADELDER-LRQLLNKPK 177 (267)
T ss_pred ccHHHHHHHHHHHHHcCCCcEEEEecCccccccHHHHHHHHHHHHHHcCCCCCcceeEecccchHHHHHH-HHHHHcCCC
Confidence 34567888999999999888665544221 12233444444 2333333221 122211 11112 2 2
Q ss_pred CCeEEEEecccccccccccccccc
Q psy14416 329 KPGVCLVVSGPGLLHTFGGMANAQ 352 (1065)
Q Consensus 329 kpgv~~~tsGpG~~N~~~av~eA~ 352 (1065)
+|.+++|.+...+..++.++.++-
T Consensus 178 ~~~ai~~~~d~~a~g~~~~l~~~g 201 (267)
T cd06283 178 KKTAIFAANGLILLEVLKALKELG 201 (267)
T ss_pred CCCEEEEcCcHHHHHHHHHHHHcC
Confidence 578888887665555555555543
No 448
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=23.90 E-value=8.5e+02 Score=26.00 Aligned_cols=129 Identities=16% Similarity=0.085 Sum_probs=65.7
Q ss_pred eEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeeccccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcC
Q psy14416 202 RVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQG 281 (1065)
Q Consensus 202 rvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~G 281 (1065)
..+++.+.. ...+.+..+.+.++|++.+ ++... +. ... .........+..+++.|.+.|
T Consensus 57 dgiii~~~~---~~~~~~~~l~~~~iPvv~~--~~~~~----~~-~~~-----------~v~~d~~~~~~~~~~~l~~~g 115 (268)
T cd06273 57 DGLALIGLD---HSPALLDLLARRGVPYVAT--WNYSP----DS-PYP-----------CVGFDNREAGRLAARHLIALG 115 (268)
T ss_pred CEEEEeCCC---CCHHHHHHHHhCCCCEEEE--cCCCC----CC-CCC-----------EEEeChHHHHHHHHHHHHHCC
Confidence 445555532 2345566677788886654 33210 00 000 111245678888999999999
Q ss_pred ceEEEeecCCc---------hhhhHHHhhcCCce-----EEEccCCchHHH-HHHHHHHHhCCCeEEEEecccccccccc
Q psy14416 282 IEYVFGIVGIP---------VIELAMACQQEGIH-----YIGMRNEQAACY-AAQAIGYLTKKPGVCLVVSGPGLLHTFG 346 (1065)
Q Consensus 282 V~~vfg~pG~~---------~~~l~~al~~~~i~-----~i~~~~E~~A~~-~A~g~ar~tgkpgv~~~tsGpG~~N~~~ 346 (1065)
.+++.-+-|.. ...+..++++.++. .+........++ +..-+-+...+|.+++++++.-+.-++.
T Consensus 116 ~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~~~~a~~~~~ 195 (268)
T cd06273 116 HRRIAMIFGPTQGNDRARARRAGVRAALAEAGLELPELWQVEAPYSIADGRAALRQLLEQPPRPTAVICGNDVLALGALY 195 (268)
T ss_pred CCeEEEEeccccCCccHHHHHHHHHHHHHHcCCCCCHHHeeeCCCcHHHHHHHHHHHHcCCCCCCEEEEcChHHHHHHHH
Confidence 99877774421 22334455555532 222111221111 1111211235688988877665555555
Q ss_pred ccccc
Q psy14416 347 GMANA 351 (1065)
Q Consensus 347 av~eA 351 (1065)
++.+.
T Consensus 196 ~l~~~ 200 (268)
T cd06273 196 EARRL 200 (268)
T ss_pred HHHHc
Confidence 55544
No 449
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=23.69 E-value=2.3e+02 Score=36.80 Aligned_cols=83 Identities=13% Similarity=0.053 Sum_probs=43.3
Q ss_pred HHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHH------HHhhhcCCCEEEEeCCccccccc---cCCCcc-ccCCCe
Q psy14416 517 TELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAA------RTHALQNADLVLLLGARLNWILH---FGRAPR-FKSNVK 586 (1065)
Q Consensus 517 ~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~------~~~al~~aDlVI~iG~~~~~~~~---~g~~~~-~~~~~~ 586 (1065)
..+.+|...+|-|-+....+............|.. ...-+.++|+||.+|+.+..... ..+... -....+
T Consensus 126 ~~~~~f~~~~Gs~n~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~D~~~ad~Il~~G~Np~~s~~~~~~~~~~~ar~~GaK 205 (760)
T cd02760 126 GTFPAFLAAWGPIDFSFGSGQGVKCVHSEHLYGEFWHRAFTVAADTPLANYVISFGSNVEASGGPCAVTRHADARVRGYK 205 (760)
T ss_pred HHHHHHHHHhCCCcccccCCccccccchhhhhcccccCCCCccchHhcCCEEEEECCCchHhcCcHHHHHHHHHHHcCCe
Confidence 45667888888775432211111100011112311 12345789999999998743211 111111 123579
Q ss_pred EEEecCChhhccc
Q psy14416 587 IIQVDLNAEELHN 599 (1065)
Q Consensus 587 iI~Vd~d~~~~~~ 599 (1065)
+|.||+.......
T Consensus 206 lIvVDPr~t~ta~ 218 (760)
T cd02760 206 RVQVEPHLSVTGA 218 (760)
T ss_pred EEEEcCCCCcchh
Confidence 9999998766554
No 450
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=23.65 E-value=5.4e+02 Score=26.47 Aligned_cols=37 Identities=14% Similarity=0.159 Sum_probs=28.1
Q ss_pred cEEEEEeCCcc-hhhhhHHHhhcccCCCcEEEEecCCC
Q psy14416 72 PGVCLVVSGPG-LLHTFGGMANAQINCWPMLVIGGSCA 108 (1065)
Q Consensus 72 ~gv~~~t~GPG-~~N~l~gla~A~~~~~Pll~Isg~~~ 108 (1065)
--++++.|-.| ..+.+..+..|+..++|+|.||+...
T Consensus 102 ~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~ 139 (177)
T cd05006 102 GDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDG 139 (177)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 34555544444 67999999999999999999996643
No 451
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=23.57 E-value=3.7e+02 Score=30.98 Aligned_cols=84 Identities=17% Similarity=0.229 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEccCCCc----hhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCccccc---HHHHhhhc
Q psy14416 485 GIAELKQASRLILEAKAPLVIIGKGAAY----SQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVS---AARTHALQ 557 (1065)
Q Consensus 485 ~~~~v~~~ae~L~~AkrPvIlvG~g~~~----~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg---~~~~~al~ 557 (1065)
+.+.++++++++.++++++++.|.+..+ ......+..|+..+|.- ...+.+.....+|.+-- ....++++
T Consensus 229 ~~~~i~~la~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~l~~l~G~~---~~~g~~~~~~~np~~~~~~~~~~~~al~ 305 (374)
T cd00368 229 PAETIRALAREFAAAKRAVILWGMGLTQHTNGTQNVRAIANLAALTGNI---GRPGGGLGPGGNPLVSAPDANRVRAALK 305 (374)
T ss_pred CHHHHHHHHHHHHhCCCeEEEeccccceecccHHHHHHHHHHHHHhCCC---CCCCCcCCCCCChhhcCCCHHHHHHHHh
Confidence 4677999999999999999999987743 12334445555544331 11122333344454332 23346788
Q ss_pred CCCEEEEeCCcccc
Q psy14416 558 NADLVLLLGARLNW 571 (1065)
Q Consensus 558 ~aDlVI~iG~~~~~ 571 (1065)
+.|+++.+....++
T Consensus 306 ~~~~~V~~d~~~~e 319 (374)
T cd00368 306 KLDFVVVIDIFMTE 319 (374)
T ss_pred CCCeEEEEecCCCc
Confidence 99999999877765
No 452
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=23.42 E-value=1.4e+02 Score=37.10 Aligned_cols=163 Identities=13% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCC-----cEEEEccCCCchhHHHHHHHHHhh-cCCCEEecCCCCCCCCCCCccc------ccHHHH
Q psy14416 486 IAELKQASRLILEAKA-----PLVIIGKGAAYSQAETELLSFVNS-FNLPFLPTPMGKGVVPDAHPNC------VSAART 553 (1065)
Q Consensus 486 ~~~v~~~ae~L~~Akr-----PvIlvG~g~~~~~a~~~L~~LAe~-lg~PV~tt~~gkg~v~~~hpl~------lg~~~~ 553 (1065)
+++++.+++.|++.+. -+.+.+++.........+.+|+.. +|.|.+.+..+-+..+...-+. ......
T Consensus 73 deAl~~ia~kl~~i~~~~G~~~i~~~~~~~~~~e~~~~~~~l~~~~~gs~~~~~~~~~c~~~~~~~~~~~~G~~~~~~~~ 152 (565)
T cd02754 73 DEALDLIAERFKAIQAEYGPDSVAFYGSGQLLTEEYYAANKLAKGGLGTNNIDTNSRLCMASAVAGYKRSFGADGPPGSY 152 (565)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEecCCccHHHHHHHHHHHHHhCCCCcccCCCcccchHHHHHHHhhccCCCCCCCH
Q ss_pred hhhcCCCEEEEeCCccccc--cccCCCccccC---CCeEEEecCChhhcccccccceEEE--cCHHHHHHHHHHhhcccc
Q psy14416 554 HALQNADLVLLLGARLNWI--LHFGRAPRFKS---NVKIIQVDLNAEELHNSVQAAVAIQ--SDVRLTVQQLKQMLSHTQ 626 (1065)
Q Consensus 554 ~al~~aDlVI~iG~~~~~~--~~~g~~~~~~~---~~~iI~Vd~d~~~~~~~~~~~~~I~--~D~~~~L~~L~~~l~~~~ 626 (1065)
..+.++|+||.+|+.+... ....+..+-.. ..++|.||+........-...+.+. .|...++..+...+.
T Consensus 153 ~Di~~ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP~~t~ta~~Ad~~l~i~PGtD~al~la~~~~ii~--- 229 (565)
T cd02754 153 DDIEHADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDPRRTRTADIADLHLPIRPGTDLALLNGLLHVLIE--- 229 (565)
T ss_pred HHHhhCCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcCCCCcchHHhCeeeCCCCCccHHHHHHHHHHHHH---
Q ss_pred cCCCCCCCchHHHHHHHHHHhhhhcccc
Q psy14416 627 RNWSFSATSPWWQELKLKCQTNRQVKLP 654 (1065)
Q Consensus 627 ~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 654 (1065)
......+|.+++..-....++.+..
T Consensus 230 ---~~~~d~~fv~~~t~g~~~~~~~~~~ 254 (565)
T cd02754 230 ---EGLIDRDFIDAHTEGFEELKAFVAD 254 (565)
T ss_pred ---CCCcCHHHHHHHhccHHHHHHHHhh
No 453
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=23.18 E-value=2.6e+02 Score=33.79 Aligned_cols=50 Identities=12% Similarity=0.214 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecC
Q psy14416 485 GIAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTP 534 (1065)
Q Consensus 485 ~~~~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~ 534 (1065)
.......++..+....+.+.++.....+..+.++++.+++++++|++...
T Consensus 108 KTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~ 157 (437)
T PRK00771 108 KTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDP 157 (437)
T ss_pred HHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecC
Confidence 34566677777765544455555556666778899999999999987553
No 454
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.08 E-value=8.4e+02 Score=26.59 Aligned_cols=178 Identities=12% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHHHhhhcCCCEEEEEEcCCeeeeccccchhhhhhhhh-ccCCCcccccCccHHHHHHHHHHhcCceEEEeecCC----
Q psy14416 217 MELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIK-KSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGI---- 291 (1065)
Q Consensus 217 ~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~~~~l~~-~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~---- 291 (1065)
..+..+.+.++|+|.+ +.. .. ..............+..+++.|.+.|.+++.-+-|.
T Consensus 70 ~~~~~l~~~~iPvV~i--~~~----------------~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~ 131 (269)
T cd06287 70 PQVARLRQRGIPVVSI--GRP----------------PGDRTDVPYVDLQSAATARMLLEHLRAQGARQIALIVGSARRN 131 (269)
T ss_pred HHHHHHHHcCCCEEEe--CCC----------------CCCCCCCCeEeeCcHHHHHHHHHHHHHcCCCcEEEEeCCcccc
Q ss_pred ----chhhhHHHhhcCCceEEEcc-----CCchHHHHHHHHHHHhCCCeEEEEeccccccccccccccccccCcc--eEe
Q psy14416 292 ----PVIELAMACQQEGIHYIGMR-----NEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWP--MLV 360 (1065)
Q Consensus 292 ----~~~~l~~al~~~~i~~i~~~-----~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~eA~~~~vP--Llv 360 (1065)
+...+..++++.++...... ++..+--...-+-+...+|-+++|++..-+..++.++.++ -=++| +-+
T Consensus 132 ~~~~R~~gf~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~gvl~al~~~-gl~vP~dvsv 210 (269)
T cd06287 132 SYLEAEAAYRAFAAEHGMPPVVLRVDEAGGEEAGYAACAQLLAQHPDLDALCVPVDAFAVGAVRAATEL-GRAVPDQLRV 210 (269)
T ss_pred cHHHHHHHHHHHHHHcCCCcceeEecCCCChHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHc-CCCCCCceEE
Q ss_pred ec-CCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChhh
Q psy14416 361 IG-GSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANL 427 (1065)
Q Consensus 361 It-g~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~Dv 427 (1065)
++ .|.+....-...+-+++| +..+-....++..++.....+..+..+.+|..+
T Consensus 211 ig~~d~~~~~~~~p~ltti~~--------------~~~~~g~~A~~~l~~~i~~~~~~~~~~~~~~~l 264 (269)
T cd06287 211 VTRYDGLRARTSEPPLTAVDL--------------HLDEVAEQAVDLLFAHLEGDETGRTVVGPMPEL 264 (269)
T ss_pred EeccCchhhccCCCCcccccC--------------CHHHHHHHHHHHHHHHhcCCCCCCceeecCCeE
No 455
>PRK14071 6-phosphofructokinase; Provisional
Probab=23.07 E-value=2.9e+02 Score=32.46 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhcCceEEEeecCCchhhhHHHhh
Q psy14416 269 ANQVIAQALKFQGIEYVFGIVGIPVIELAMACQ 301 (1065)
Q Consensus 269 ~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~ 301 (1065)
..+.+++.|+++||+.++.+-|..++.....|.
T Consensus 95 ~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~ 127 (360)
T PRK14071 95 RSQEIIDGYHSLGLDALIGIGGDGSLAILRRLA 127 (360)
T ss_pred HHHHHHHHHHHcCCCEEEEECChhHHHHHHHHH
Confidence 457899999999999999999987766554443
No 456
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=23.03 E-value=2e+02 Score=31.94 Aligned_cols=69 Identities=22% Similarity=0.339 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHHHHhhhcCCCEEEE
Q psy14416 485 GIAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLL 564 (1065)
Q Consensus 485 ~~~~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~~~~al~~aDlVI~ 564 (1065)
+.+.+++++++|.++++ ++++|.|....-+......|.. +|.|+.. .............+.+-|++|.
T Consensus 114 d~~~i~~~~~~i~~a~~-I~i~G~G~S~~~a~~~~~~l~~-~g~~~~~----------~~~~~~~~~~~~~~~~~D~vI~ 181 (284)
T PRK11302 114 DPSAINRAVDLLTQAKK-ISFFGLGASAAVAHDAQNKFFR-FNVPVVY----------FDDIVMQRMSCMNSSDGDVVVL 181 (284)
T ss_pred CHHHHHHHHHHHHcCCe-EEEEEcchHHHHHHHHHHHHHh-cCCceEe----------cCCHHHHHHHHHhCCCCCEEEE
Q ss_pred e
Q psy14416 565 L 565 (1065)
Q Consensus 565 i 565 (1065)
+
T Consensus 182 i 182 (284)
T PRK11302 182 I 182 (284)
T ss_pred E
No 457
>PRK13938 phosphoheptose isomerase; Provisional
Probab=22.89 E-value=2.5e+02 Score=29.98 Aligned_cols=100 Identities=9% Similarity=0.099 Sum_probs=61.1
Q ss_pred cHHHHHHHHHHhcCceEEEeecCCchhhhHHH--hh------cCCceEEEccCCchHHHHH------------HHHHHHh
Q psy14416 268 SANQVIAQALKFQGIEYVFGIVGIPVIELAMA--CQ------QEGIHYIGMRNEQAACYAA------------QAIGYLT 327 (1065)
Q Consensus 268 ~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~a--l~------~~~i~~i~~~~E~~A~~~A------------~g~ar~t 327 (1065)
..++.+++.|++.|-=++||+-++.......+ |. ++++..+....+. +-..| .-....-
T Consensus 33 ~~a~~~~~~l~~g~rI~i~G~G~S~~~A~~fa~~L~~~~~~~r~~lg~~~l~~~~-~~~~a~~nd~~~~~~~~~~~~~~~ 111 (196)
T PRK13938 33 AIGDRLIAGYRAGARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEALHANS-SHLTAVANDYDYDTVFARALEGSA 111 (196)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHcCCCccCCcCccceEEEeCCh-HHHHHhhccccHHHHHHHHHHhcC
Confidence 56778888899999999999977655443322 22 1233343332222 22211 1112222
Q ss_pred CCCeEEEEecccc-ccccccccccccccCcceEeecCCCccC
Q psy14416 328 KKPGVCLVVSGPG-LLHTFGGMANAQINCWPMLVIGGSCAQD 368 (1065)
Q Consensus 328 gkpgv~~~tsGpG-~~N~~~av~eA~~~~vPLlvItg~~p~~ 368 (1065)
.+--++++-|..| .-+.+.++..|...+.|+|.||+.....
T Consensus 112 ~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~ 153 (196)
T PRK13938 112 RPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGGQ 153 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCh
Confidence 3334555555555 6678889999999999999999977544
No 458
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=22.83 E-value=2.1e+02 Score=32.39 Aligned_cols=109 Identities=14% Similarity=0.063 Sum_probs=67.2
Q ss_pred EccCCchHHHHHHHHHHHhCCCeEEEEecccccc-----ccccccccccccCcceEeecCCCccCCC-CCCCCCccChhh
Q psy14416 309 GMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL-----HTFGGMANAQINCWPMLVIGGSCAQDHE-GIGGFQECPQVE 382 (1065)
Q Consensus 309 ~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~-----N~~~av~eA~~~~vPLlvItg~~p~~~~-g~ga~Q~idQ~~ 382 (1065)
...-|+...-+|.|+|..-.+|-++ |.++=++ ..-+.|+ +++.||=++......... .-+.+|.++...
T Consensus 54 vGIaEQ~mvg~AAGLA~~Gk~Pfv~--tfa~F~s~Ra~EQir~~ia---y~~lnVKiv~t~~G~t~g~dG~sHq~~EDia 128 (312)
T COG3958 54 VGIAEQDMVGTAAGLALAGKKPFVS--TFAAFLSRRAWEQIRNSIA---YNNLNVKIVATHAGVTYGEDGSSHQALEDIA 128 (312)
T ss_pred cchHHHHHHHHHHHHHhcCCCceee--chHHHHHHHHHHHHHHHhh---hccCCeEEEEecCCcccCCCCccchhHHHHH
Confidence 3467899999999999877777553 4333222 1222222 345555555444443332 345789998899
Q ss_pred hhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 383 LARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 383 l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
++|.+.+...-.++.. . ..++++..+. .-.||+|+-+..+
T Consensus 129 imR~lpn~~V~~P~D~--v-~~~~i~~~~~-~~~GP~Y~Rl~R~ 168 (312)
T COG3958 129 IMRGLPNMTVIAPADA--V-ETRAILDQIA-DYKGPVYMRLGRG 168 (312)
T ss_pred HHhcCCCceEEccCcH--H-HHHHHHHHHH-hcCCCEEEEecCC
Confidence 9999988776654322 2 4444455444 3469999999874
No 459
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=22.76 E-value=77 Score=39.79 Aligned_cols=113 Identities=17% Similarity=0.136 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhCC----CcEEE--EccCCCc---hhHHHHHHHHHhhcCCCEEec-CCCCCCCCCCCcccccHHH---
Q psy14416 486 IAELKQASRLILEAK----APLVI--IGKGAAY---SQAETELLSFVNSFNLPFLPT-PMGKGVVPDAHPNCVSAAR--- 552 (1065)
Q Consensus 486 ~~~v~~~ae~L~~Ak----rPvIl--vG~g~~~---~~a~~~L~~LAe~lg~PV~tt-~~gkg~v~~~hpl~lg~~~--- 552 (1065)
+++++.+++.|++.+ .-.|. .|.+... ......+.+|+..+|.++... ..+-+.....++..+|...
T Consensus 79 DEAl~~iA~kl~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~c~~~~~~~~~~~~G~~~~~~ 158 (609)
T cd02751 79 DEALDLVASELKRIREKYGNEAIFGGSYGWASAGRLHHAQSLLHRFLNLIGGYLGSYGTYSTGAAQVILPHVVGSDEVYE 158 (609)
T ss_pred HHHHHHHHHHHHHHHHHhCcceeecccCCcccccccccchHHHHHHHHhcCCCcCCCCCccHHHHHhHhhhEEccchhcc
Confidence 567777777776522 12232 2322111 123456788888887654211 1110000001122223111
Q ss_pred ----Hhhhc-CCCEEEEeCCccccccccC----------CCcc-ccCCCeEEEecCChhhcc
Q psy14416 553 ----THALQ-NADLVLLLGARLNWILHFG----------RAPR-FKSNVKIIQVDLNAEELH 598 (1065)
Q Consensus 553 ----~~al~-~aDlVI~iG~~~~~~~~~g----------~~~~-~~~~~~iI~Vd~d~~~~~ 598 (1065)
..-+. ++|+||.+|+.+....... +..+ ....+++|.||+......
T Consensus 159 ~~~~~~D~~~~ad~il~wG~N~~~~~~~~~~~~~~~~~~~~~~a~~~GakiivIDPr~s~ta 220 (609)
T cd02751 159 QGTSWDDIAEHSDLVVLFGANPLKTRQGGGGGPDHGSYYYLKQAKDAGVRFICIDPRYTDTA 220 (609)
T ss_pred CCCChhhHHhcCCEEEEECCCHHHhcCCCCCccCcchHHHHHHHHHCCCeEEEECCCCCccc
Confidence 22334 5999999999875433211 1111 124579999999875543
No 460
>PRK03202 6-phosphofructokinase; Provisional
Probab=22.55 E-value=2.9e+02 Score=31.89 Aligned_cols=34 Identities=21% Similarity=0.038 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHhcCceEEEeecCCchhhhHHHhh
Q psy14416 268 SANQVIAQALKFQGIEYVFGIVGIPVIELAMACQ 301 (1065)
Q Consensus 268 ~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~ 301 (1065)
...+.+++.|++++++.++.+-|.....-...|.
T Consensus 80 ~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~L~ 113 (320)
T PRK03202 80 EGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLT 113 (320)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHH
Confidence 3578899999999999999999987766554444
No 461
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=22.32 E-value=1.7e+02 Score=29.03 Aligned_cols=97 Identities=23% Similarity=0.285 Sum_probs=56.2
Q ss_pred ccHHHHHHHHHHhcCceEEEeecCCchhhh--HHHhh----cC--CceEEEccC----------CchHHHHHHHHHHHhC
Q psy14416 267 LSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQ----QE--GIHYIGMRN----------EQAACYAAQAIGYLTK 328 (1065)
Q Consensus 267 ~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l--~~al~----~~--~i~~i~~~~----------E~~A~~~A~g~ar~tg 328 (1065)
...++.+++.+.+-|.=++||+-|+..... ...+. .+ .+..+...+ |...+|+..-......
T Consensus 22 ~~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (138)
T PF13580_consen 22 EKAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLLALYDI 101 (138)
T ss_dssp HHHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchhhHHHHHHHHHcCC
Confidence 367899999999999999999976644322 22221 12 233444333 4444544433333334
Q ss_pred CCe-EEEEecccc-ccccccccccccccCcceEeecC
Q psy14416 329 KPG-VCLVVSGPG-LLHTFGGMANAQINCWPMLVIGG 363 (1065)
Q Consensus 329 kpg-v~~~tsGpG-~~N~~~av~eA~~~~vPLlvItg 363 (1065)
+|+ ++++-|..| ..|.+-++..|+.-+.++|.|||
T Consensus 102 ~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 102 RPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp -TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 443 333333333 57888899999999999999986
No 462
>KOG1223|consensus
Probab=21.78 E-value=19 Score=42.80 Aligned_cols=103 Identities=7% Similarity=-0.044 Sum_probs=76.0
Q ss_pred chHHHHHHHHHHHhCCCeEEEEeccccccccccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEee
Q psy14416 314 QAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSAR 393 (1065)
Q Consensus 314 ~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~ 393 (1065)
+...+.+.|++| ...+|..-.++..++.++..|+.+.+.++...+.+..+....+.+++..-++.+.+..+.
T Consensus 309 ri~~~~lAGT~k--------Rg~s~~ed~~L~~~Ll~s~Kd~~Eh~mlvd~~rndl~~V~~~v~V~~l~~i~kfs~VqHl 380 (508)
T KOG1223|consen 309 RILNRPLAGTAK--------RGKSGEEDMALEKALLESEKDRAEHSMLVDLIRNDLQGVCDNVKVKKLKTIEKFSHVQHL 380 (508)
T ss_pred ceeehhhhcccc--------cCCChHHHHHHHHHHHhchhhccceeeehhcCchhhhccccceeechhhhhhhhheeeee
Confidence 555666667665 346788899999999999999999999999999999999999999998888888887766
Q ss_pred CCChh------hHHHHHHHHHHHhhcCCCCEEEEecC
Q psy14416 394 PPNIH------LIGQHVEKAVRLSTFGKPGVSYLDFP 424 (1065)
Q Consensus 394 l~~~~------~i~~~i~~A~~~A~~~~~GPV~L~iP 424 (1065)
.+.+. .-...+.+|+.=+-.--.+|++.+++
T Consensus 381 ~s~vtG~L~~~~t~~dil~alhPa~tvsG~Pk~~A~~ 417 (508)
T KOG1223|consen 381 YSPVTGELPVELTLTDVLRALHPAGTVSGAPKVKAME 417 (508)
T ss_pred cCCccccccccchHHHHHHhhcCCCcccCChHHHHHH
Confidence 55442 23334444444332223467777766
No 463
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=21.73 E-value=3.3e+02 Score=30.35 Aligned_cols=95 Identities=14% Similarity=0.090 Sum_probs=56.7
Q ss_pred cCccHHHHHHHHHHhcCceE-EEeecCCchh--------hhHHHhhcCCc----eEE-EccCCchHHHHHHHHHHHhCCC
Q psy14416 265 EELSANQVIAQALKFQGIEY-VFGIVGIPVI--------ELAMACQQEGI----HYI-GMRNEQAACYAAQAIGYLTKKP 330 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~-vfg~pG~~~~--------~l~~al~~~~i----~~i-~~~~E~~A~~~A~g~ar~tgkp 330 (1065)
.+..++...++.|.+.|-++ +.-+.|.... -+.+|+.+.|+ .++ .+......++.+.- -.+...|
T Consensus 101 D~~~a~~~a~~~Li~~Gh~~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl~~~~~~i~~~~~~~~~g~~~~~-~ll~~~p 179 (279)
T PF00532_consen 101 DNYEAGYEATEYLIKKGHRRPIAFIGGPEDSSTSRERLQGYRDALKEAGLPIDEEWIFEGDFDYESGYEAAR-ELLESHP 179 (279)
T ss_dssp EHHHHHHHHHHHHHHTTCCSTEEEEEESTTTHHHHHHHHHHHHHHHHTTSCEEEEEEEESSSSHHHHHHHHH-HHHHTST
T ss_pred cchHHHHHHHHHHHhcccCCeEEEEecCcchHHHHHHHHHHHHHHHHcCCCCCcccccccCCCHHHHHHHHH-HHHhhCC
Confidence 46678889999999999999 7777664332 24456666664 233 33344455554322 2244457
Q ss_pred e--EEEEeccccccccccccccccccCcceEe
Q psy14416 331 G--VCLVVSGPGLLHTFGGMANAQINCWPMLV 360 (1065)
Q Consensus 331 g--v~~~tsGpG~~N~~~av~eA~~~~vPLlv 360 (1065)
- +++|++..-+.-++-++.+.-+-++|--+
T Consensus 180 ~idai~~~nd~~A~ga~~~l~~~gr~~ip~di 211 (279)
T PF00532_consen 180 DIDAIFCANDMMAIGAIRALRERGRLKIPEDI 211 (279)
T ss_dssp T-SEEEESSHHHHHHHHHHHHHTT-TCTTTEE
T ss_pred CCEEEEEeCHHHHHHHHHHHHHcCCcccChhh
Confidence 7 89998776555554444444323456444
No 464
>cd00281 DAP_dppA Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacterized
Probab=21.69 E-value=46 Score=37.18 Aligned_cols=144 Identities=10% Similarity=0.025 Sum_probs=72.6
Q ss_pred cHHHHHHHHHHhcCceEEEeecCCch-hhhHHHhhcCCceEEEcc----------CCchHHHHHHHHHHHhCC-CeEEEE
Q psy14416 268 SANQVIAQALKFQGIEYVFGIVGIPV-IELAMACQQEGIHYIGMR----------NEQAACYAAQAIGYLTKK-PGVCLV 335 (1065)
Q Consensus 268 ~~~~~l~~~L~~~GV~~vfg~pG~~~-~~l~~al~~~~i~~i~~~----------~E~~A~~~A~g~ar~tgk-pgv~~~ 335 (1065)
....+.++.+.+.|.+.|...-+... ..|.-..-.+..+.|... ||...+.+=.||.-..|. ++++-=
T Consensus 37 ~evnAaiega~~aGa~eVvVnDsHg~~~Nll~e~L~~~a~LI~G~prp~~Mm~Gld~~~D~v~fiGYHa~ag~~~gvL~H 116 (265)
T cd00281 37 EAVIAACEGSLAAGATQVLVKDSHDSGRNLIPERLPEPVQLISGSGHPYCMVQGLDRSFDALLFIGYHARAGTAANVMAH 116 (265)
T ss_pred HHHHHHHHHHHHcCCcEEEEEcCCCCccccChhHCCcCEEEEecCCCcchhhhccccCccEEEEEecCCcccCCCCcccc
Confidence 35567788888899999998875322 122222222345555332 222222222332221222 333211
Q ss_pred e-cccccccc-cc---------ccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHH
Q psy14416 336 V-SGPGLLHT-FG---------GMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHV 404 (1065)
Q Consensus 336 t-sGpG~~N~-~~---------av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i 404 (1065)
| +| ...+. ++ .-+-|-.-++||+++|||.-....-...+..+--+..-+.+.+++....+|..+.+.|
T Consensus 117 T~~~-~~~~v~iNG~~~gE~~lna~~Ag~~gVPV~lvsGDd~~~~ea~~~~P~~~tv~vK~~~gr~aa~~~~p~~a~~~I 195 (265)
T cd00281 117 SYTT-EVSQIRINGQAIAEFHLNALTAGYYGVPVVMVAGDAEVCKEAKAYDAQVETVVTKKGMGRFSVKAPSPQKVLRAI 195 (265)
T ss_pred cccc-ceEEEEECCEEcCHHHHHHHHHhhcCCCEEEEecCHHHHHHHHHhCCCceEEEEeeeeCCCccccCCHHHHHHHH
Confidence 1 12 12221 11 1122444589999999997543211111111222233345556777778899888888
Q ss_pred HHHHHHhh
Q psy14416 405 EKAVRLST 412 (1065)
Q Consensus 405 ~~A~~~A~ 412 (1065)
+++.+.|+
T Consensus 196 ~~~a~~Al 203 (265)
T cd00281 196 REGTEGSL 203 (265)
T ss_pred HHHHHHHH
Confidence 88887774
No 465
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=21.63 E-value=9.8e+02 Score=26.71 Aligned_cols=91 Identities=14% Similarity=0.072 Sum_probs=49.2
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCch--------hhhHHHhhcCCceE--E-EccCCchHHHHHHHHHHHh-C-CCe
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPV--------IELAMACQQEGIHY--I-GMRNEQAACYAAQAIGYLT-K-KPG 331 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~--------~~l~~al~~~~i~~--i-~~~~E~~A~~~A~g~ar~t-g-kpg 331 (1065)
.+..++..+++.|.+.|-+++.-+-|... ..+..++.+.+++. + ........++-+.-.-... + +|.
T Consensus 161 dn~~~~~~~~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 240 (327)
T TIGR02417 161 DDVDAAAELIERLLSQHADEFWYLGAQPELSVSRDRLAGFRQALKQATLEVEWVYGGNYSRESGYQMFAKLCARLGRLPQ 240 (327)
T ss_pred CcHHHHHHHHHHHHHCCCCeEEEEeCcccchhHHHHHHHHHHHHHHcCCChHhEEeCCCChHHHHHHHHHHHhcCCCCCc
Confidence 45567788899999999988776654321 22334455556432 2 1122222233222111112 3 588
Q ss_pred EEEEeccccccccccccccccccCcc
Q psy14416 332 VCLVVSGPGLLHTFGGMANAQINCWP 357 (1065)
Q Consensus 332 v~~~tsGpG~~N~~~av~eA~~~~vP 357 (1065)
+++|.+..-+.-++.++.+.- ++|
T Consensus 241 Ai~~~~D~~A~g~~~al~~~g--~vP 264 (327)
T TIGR02417 241 ALFTTSYTLLEGVLDYMLERP--LLD 264 (327)
T ss_pred EEEEcCcHHHHHHHHHHHHcC--CCC
Confidence 988887665555555555543 454
No 466
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=21.20 E-value=1.5e+02 Score=38.32 Aligned_cols=109 Identities=13% Similarity=0.092 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhC--CCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCC--CcccccH----HHHhhhc
Q psy14416 486 IAELKQASRLILEA--KAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDA--HPNCVSA----ARTHALQ 557 (1065)
Q Consensus 486 ~~~v~~~ae~L~~A--krPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~--hpl~lg~----~~~~al~ 557 (1065)
+++++.+++.|++. ++..++.++... .+..-...+|++.+|.+-+.+...-+.-+.. ....+|. ....-+.
T Consensus 119 dEAl~~IA~kL~~~~p~~i~~y~sg~~s-~e~~~~~~~f~r~lGt~n~~~~s~~C~~~~~~al~~~~G~~~~t~~~~Di~ 197 (743)
T TIGR01701 119 DDAYQEIAAKLNSLDPKQVAFYTSGRTS-NEAAYLYQLFARSLGSNNLPDCSNMCHEPSSVALKRSIGIGKGSVNLEDFE 197 (743)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEecCCcc-hHHHHHHHHHHHHhCCCCcCCCcccccchhhHHHHHhcCCCCCCCCHhHHH
Confidence 67778888888765 455555554332 2334467889998998766432211110100 0111221 1233467
Q ss_pred CCCEEEEeCCccccccc--cCCCcc-ccCCCeEEEecCChh
Q psy14416 558 NADLVLLLGARLNWILH--FGRAPR-FKSNVKIIQVDLNAE 595 (1065)
Q Consensus 558 ~aDlVI~iG~~~~~~~~--~g~~~~-~~~~~~iI~Vd~d~~ 595 (1065)
++|+||.+|+.+..... ..++.. ....+++|.||+...
T Consensus 198 ~ad~Il~~G~Np~~~~p~~~~~l~~a~~rGakiIvIdP~~~ 238 (743)
T TIGR01701 198 HTDCLVFIGSNAGTNHPRMLKYLYAAKKRGAKIIAINPLRE 238 (743)
T ss_pred hCCEEEEEecCcccccHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 89999999998754321 112211 124689999998653
No 467
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=20.90 E-value=1.4e+02 Score=39.86 Aligned_cols=112 Identities=17% Similarity=0.190 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhCCC-----------------cEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCC--Ccc
Q psy14416 486 IAELKQASRLILEAKA-----------------PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDA--HPN 546 (1065)
Q Consensus 486 ~~~v~~~ae~L~~Akr-----------------PvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~--hpl 546 (1065)
+++++.+++.|++.+. -+.+.+++....+..-.+.+|++.+|.+-+.....-+..+.. ...
T Consensus 126 DEAld~IA~kLk~i~~~~~~~~~~~G~~~~~~~sia~~~s~~~tnEe~yl~~kf~r~lGt~n~~~~~~~C~~~~~~al~~ 205 (1009)
T TIGR01553 126 DWAIDTIARRVKDTRDATFVTKDAKGQVVNRCDGIASVGSSAMDNEECWLYQKWLRSLGLFYIEHQARIUHSPTVASLAP 205 (1009)
T ss_pred HHHHHHHHHHHHHHHHhhhcccccCCccccccceEEEEecCCCCcHHHHHHHHHHHHhCCCcccCcccccccHHHHHHHH
Confidence 5667777776654321 133334333323334467889998998755332111100000 011
Q ss_pred cccH----HHHhhhcCCCEEEEeCCccccccc--cCCCcc-ccCCCeEEEecCChhhc
Q psy14416 547 CVSA----ARTHALQNADLVLLLGARLNWILH--FGRAPR-FKSNVKIIQVDLNAEEL 597 (1065)
Q Consensus 547 ~lg~----~~~~al~~aDlVI~iG~~~~~~~~--~g~~~~-~~~~~~iI~Vd~d~~~~ 597 (1065)
.+|. ....-+.++|+||.+|+.+..... ..+..+ ....+++|.||+.....
T Consensus 206 ~~G~~~~~~~~~Di~~Ad~Ilv~G~Np~es~p~~~~~i~~Ak~~GakiIvIDPR~t~t 263 (1009)
T TIGR01553 206 SFGRGAMTNNWVDIKNSDLILVMGGNPAENHPIGFKWAIRAKKKGAKIIHIDPRFNRT 263 (1009)
T ss_pred hhcCCCCCCCHHHHHhCCEEEEECCChhhhChHHHHHHHHHHHcCCEEEEEcCCCCch
Confidence 1221 112346789999999998754321 122211 12457999999876443
No 468
>COG1701 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.83 E-value=1.3e+02 Score=32.30 Aligned_cols=135 Identities=17% Similarity=0.219 Sum_probs=80.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCC------------------CCCCCC
Q psy14416 482 PWPGIAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGK------------------GVVPDA 543 (1065)
Q Consensus 482 ~~p~~~~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gk------------------g~v~~~ 543 (1065)
..+..++++.++..|.-||+|+|=+-+... .-..+++.+||+.+|+.+=...+-+ .++..+
T Consensus 52 ~~~A~eA~raAaA~LlLAk~PVISVNGN~A-AL~p~e~v~La~~~~aklEVNLF~RteeRv~~I~e~L~~~Ga~~vLg~~ 130 (256)
T COG1701 52 IPPALEAIRAAAAALLLAKHPVISVNGNVA-ALVPEEVVELAEATGAKLEVNLFYRTEERVRKIAEVLKEHGAKEVLGTD 130 (256)
T ss_pred CchHHHHHHHHHHHHHhccCCeEEEcCcee-eeCcHHHHHHHHHhCCceEEEeeccCHHHHHHHHHHHHhcCcceeecCC
Confidence 345677888888889999999998876543 2346789999999999987655421 111111
Q ss_pred --Cccccc------HHHHhhhcCCCEEEEeCCccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHH
Q psy14416 544 --HPNCVS------AARTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTV 615 (1065)
Q Consensus 544 --hpl~lg------~~~~~al~~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L 615 (1065)
+...-+ .-..+-+-.||+||+= +.+-.-..-+.+ -.+++|-||.+|-. ......++.|+.++-..+
T Consensus 131 ~~~~~ip~l~s~R~~v~~~GIy~ADVVLvp---LEDGDRteaLv~--mGK~ViaIDLNPLS-RTar~AsItIVDnivRA~ 204 (256)
T COG1701 131 PDAARIPGLESERGKVSEEGIYSADVVLVP---LEDGDRTEALVR--MGKTVIAIDLNPLS-RTARKASITIVDNIVRAV 204 (256)
T ss_pred cccccCCCccccccccCcccceeccEEEEe---cCCCcHHHHHHH--hCCeEEEEeCCccc-cccccCceeeeHHHHHHH
Confidence 111111 0112334578998862 222111111111 24678999999853 234567888887776666
Q ss_pred HHHHHhhc
Q psy14416 616 QQLKQMLS 623 (1065)
Q Consensus 616 ~~L~~~l~ 623 (1065)
..|.+..+
T Consensus 205 p~li~~~~ 212 (256)
T COG1701 205 PNLIEFVK 212 (256)
T ss_pred HHHHHHHH
Confidence 66655443
No 469
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=20.55 E-value=1.3e+02 Score=29.02 Aligned_cols=42 Identities=26% Similarity=0.288 Sum_probs=30.8
Q ss_pred cHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEE
Q psy14416 268 SANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIG 309 (1065)
Q Consensus 268 ~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~ 309 (1065)
.....+++.+.+.|++.+...||.....+.+.+++.+++++.
T Consensus 66 ~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 66 DKVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIRVIG 107 (116)
T ss_dssp HHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCEEEe
Confidence 344567888889999999999998888888888888999874
No 470
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=20.40 E-value=1.2e+03 Score=26.04 Aligned_cols=87 Identities=13% Similarity=0.111 Sum_probs=48.1
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCch--------hhhHHHhhcCCce----EE-EccCCchHHHHHH-HHHHHhCCC
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPV--------IELAMACQQEGIH----YI-GMRNEQAACYAAQ-AIGYLTKKP 330 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~--------~~l~~al~~~~i~----~i-~~~~E~~A~~~A~-g~ar~tgkp 330 (1065)
....++..+++.|.++|-+++.-+.|... ..+.+++.+.++. ++ .+......++-+. .+-+...+|
T Consensus 165 D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (342)
T PRK10014 165 DNMQAAQLLTEHLIRNGHQRIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSEWVLECTSSQKQAAEAITALLRHNPTI 244 (342)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEcCCcccccHHHHHHHHHHHHHHcCCCCCcceEecCCCChHHHHHHHHHHHcCCCCC
Confidence 35567788899999999988776655321 2244456555543 22 2222222222221 111123367
Q ss_pred eEEEEeccccccccccccccc
Q psy14416 331 GVCLVVSGPGLLHTFGGMANA 351 (1065)
Q Consensus 331 gv~~~tsGpG~~N~~~av~eA 351 (1065)
.+++|.+..-+.-++.++.++
T Consensus 245 ~ai~~~nd~~A~g~~~~l~~~ 265 (342)
T PRK10014 245 SAVVCYNETIAMGAWFGLLRA 265 (342)
T ss_pred CEEEECCcHHHHHHHHHHHHc
Confidence 888898777666555555554
No 471
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=20.36 E-value=3.4e+02 Score=31.32 Aligned_cols=34 Identities=24% Similarity=0.126 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHhcCceEEEeecCCchhhhHHHhh
Q psy14416 268 SANQVIAQALKFQGIEYVFGIVGIPVIELAMACQ 301 (1065)
Q Consensus 268 ~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~ 301 (1065)
...+.+++.|+++||+.++.+-|...+.-...|.
T Consensus 79 ~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~ 112 (317)
T cd00763 79 EGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLT 112 (317)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHH
Confidence 4567899999999999999999987765554443
No 472
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.35 E-value=8.3e+02 Score=26.20 Aligned_cols=87 Identities=13% Similarity=-0.005 Sum_probs=42.0
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCc--------hhhhHHHhhcCCce----EEEccCCchHHHHHHHHHHHhCCCeE
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIP--------VIELAMACQQEGIH----YIGMRNEQAACYAAQAIGYLTKKPGV 332 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~--------~~~l~~al~~~~i~----~i~~~~E~~A~~~A~g~ar~tgkpgv 332 (1065)
.....+...++.|.+.|-+++--+-+.. ...+.+++++.+++ ++...++....-+..-..+...+|.+
T Consensus 101 d~~~~~~~a~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a 180 (268)
T cd06277 101 DNYSGAYAATEYLIEKGHRKIGFVGDPLYSPSFEERYEGYKKALLDHGIPFNEDYDITEKEEDEEDIGKFIDELKPLPTA 180 (268)
T ss_pred cchHHHHHHHHHHHHCCCCcEEEECCCCCCcchHHHHHHHHHHHHHcCCCCCcceEEEcchhHHHHHHHHHhcCCCCCCE
Confidence 3445667777888888888775543321 11233445555543 22222222221122111112234777
Q ss_pred EEEeccccccccccccccc
Q psy14416 333 CLVVSGPGLLHTFGGMANA 351 (1065)
Q Consensus 333 ~~~tsGpG~~N~~~av~eA 351 (1065)
+++.+..-+.-++.++.+.
T Consensus 181 i~~~~d~~a~g~~~a~~~~ 199 (268)
T cd06277 181 FFCSNDGVAFLLIKVLKEM 199 (268)
T ss_pred EEECCcHHHHHHHHHHHHc
Confidence 7777655444455555544
No 473
>KOG2684|consensus
Probab=20.04 E-value=1e+02 Score=36.22 Aligned_cols=64 Identities=19% Similarity=0.229 Sum_probs=40.4
Q ss_pred hcCCCEEEEeCCccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhh
Q psy14416 556 LQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQML 622 (1065)
Q Consensus 556 l~~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l 622 (1065)
...+||+|++|+++--.........++.....|.|+.++.. +...++.+.+|-..+...|...+
T Consensus 278 ~d~~DllIviGTSLKV~pV~~iv~~~~~~vpqIliNr~~v~---h~efd~~ll~~CD~v~~~l~~~~ 341 (412)
T KOG2684|consen 278 LDECDLLIVIGTSLKVRPVAEIVKSFPAKVPQILINRDPVP---HAEFDVELLGDCDDVIRLLCQKC 341 (412)
T ss_pred ccccceEEEeCCccccccHHHHHhhhcccCcEEEecCcccc---ccccChhhccchHHHHHHHHhhc
Confidence 34679999999987543333333334455566778877533 23346666677778877776654
No 474
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=20.02 E-value=4e+02 Score=29.22 Aligned_cols=80 Identities=18% Similarity=0.247 Sum_probs=46.0
Q ss_pred HHHHHHhhhcCCCEEEEEEcCCeeeeccccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCce-EEEeecCCchh
Q psy14416 216 GMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIE-YVFGIVGIPVI 294 (1065)
Q Consensus 216 ~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~-~vfg~pG~~~~ 294 (1065)
.+.|..+.+.|.+ ++++-||.+- ..-.+.......+.......-++.+..+++.|++.+-. .+|-+ |..
T Consensus 23 ~~~l~~l~~~g~~-~~~~Tnn~~r------~~~~~~~~l~~~g~~~~~~~iit~~~~~~~~l~~~~~~~~v~~l-g~~-- 92 (249)
T TIGR01457 23 ETFVHELQKRDIP-YLFVTNNSTR------TPESVAEMLASFDIPATLETVFTASMATADYMNDLKLEKTVYVI-GEE-- 92 (249)
T ss_pred HHHHHHHHHCCCe-EEEEeCCCCC------CHHHHHHHHHHcCCCCChhhEeeHHHHHHHHHHhcCCCCEEEEE-cCh--
Confidence 5556666677766 5557888743 22344444555555444444568888888999887543 34443 432
Q ss_pred hhHHHhhcCCc
Q psy14416 295 ELAMACQQEGI 305 (1065)
Q Consensus 295 ~l~~al~~~~i 305 (1065)
.+...+++.|+
T Consensus 93 ~l~~~l~~~g~ 103 (249)
T TIGR01457 93 GLKEAIKEAGY 103 (249)
T ss_pred hHHHHHHHcCC
Confidence 34445554454
Done!