Query psy14416
Match_columns 1065
No_of_seqs 426 out of 3894
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 19:18:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14416.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14416hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c31_A Oxalyl-COA decarboxylas 100.0 7.2E-79 2.5E-83 741.6 37.0 551 264-1062 7-562 (568)
2 2q28_A Oxalyl-COA decarboxylas 100.0 8.2E-79 2.8E-83 740.7 33.6 546 265-1060 6-557 (564)
3 3eya_A Pyruvate dehydrogenase 100.0 2.4E-77 8.1E-82 725.2 37.8 532 266-1059 2-541 (549)
4 4feg_A Pyruvate oxidase; carba 100.0 8.2E-76 2.8E-80 718.8 39.6 529 264-1048 8-547 (603)
5 3lq1_A 2-succinyl-5-enolpyruvy 100.0 2.6E-76 8.8E-81 720.1 28.5 539 266-1055 10-568 (578)
6 1ozh_A ALS, acetolactate synth 100.0 5.8E-75 2E-79 706.6 38.8 527 267-1050 11-546 (566)
7 1ybh_A Acetolactate synthase, 100.0 4.3E-75 1.5E-79 711.2 37.3 542 266-1052 11-563 (590)
8 1t9b_A Acetolactate synthase, 100.0 7.7E-75 2.7E-79 715.8 37.4 541 265-1051 80-641 (677)
9 2pgn_A Cyclohexane-1,2-dione h 100.0 1.4E-74 4.9E-79 706.3 34.6 541 265-1058 2-558 (589)
10 2uz1_A Benzaldehyde lyase; thi 100.0 5.2E-74 1.8E-78 698.2 36.4 540 265-1053 2-551 (563)
11 2x7j_A 2-succinyl-5-enolpyruvy 100.0 8.6E-75 2.9E-79 710.2 25.9 541 266-1058 30-591 (604)
12 2pan_A Glyoxylate carboligase; 100.0 2.7E-73 9.1E-78 698.8 36.4 541 266-1053 26-586 (616)
13 1q6z_A BFD, BFDC, benzoylforma 100.0 5.5E-73 1.9E-77 684.2 34.8 518 267-1049 2-527 (528)
14 2iht_A Carboxyethylarginine sy 100.0 6.1E-74 2.1E-78 698.8 25.3 528 266-1047 11-561 (573)
15 1v5e_A Pyruvate oxidase; oxido 100.0 3.4E-72 1.2E-76 685.1 39.8 528 266-1049 3-541 (590)
16 3hww_A 2-succinyl-5-enolpyruvy 100.0 3.6E-74 1.2E-78 698.2 21.3 528 266-1055 7-547 (556)
17 2wvg_A PDC, pyruvate decarboxy 100.0 2.4E-70 8.3E-75 666.6 32.3 525 266-1058 2-552 (568)
18 2vbi_A Pyruvate decarboxylase; 100.0 6.6E-70 2.3E-74 662.5 30.1 521 266-1058 2-544 (566)
19 2vk8_A Pyruvate decarboxylase 100.0 9.4E-71 3.2E-75 669.7 20.0 525 265-1058 2-553 (563)
20 2nxw_A Phenyl-3-pyruvate decar 100.0 2E-70 7E-75 666.5 20.7 516 263-1056 17-551 (565)
21 1ovm_A Indole-3-pyruvate decar 100.0 1.4E-68 4.9E-73 649.1 24.7 517 266-1058 4-543 (552)
22 2vbf_A Branched-chain alpha-ke 100.0 4E-67 1.4E-71 638.6 26.7 516 266-1058 24-562 (570)
23 3eya_A Pyruvate dehydrogenase 100.0 2.7E-43 9.1E-48 426.9 22.5 153 7-160 1-154 (549)
24 1ybh_A Acetolactate synthase, 100.0 3E-42 1E-46 421.1 24.7 153 8-160 11-164 (590)
25 4feg_A Pyruvate oxidase; carba 100.0 4E-42 1.4E-46 420.8 24.2 156 4-160 6-163 (603)
26 1t9b_A Acetolactate synthase, 100.0 5.8E-42 2E-46 422.9 24.2 154 7-160 80-234 (677)
27 2c31_A Oxalyl-COA decarboxylas 100.0 4.5E-42 1.5E-46 417.9 20.0 158 3-160 4-163 (568)
28 1ozh_A ALS, acetolactate synth 100.0 1.4E-41 4.6E-46 413.3 23.7 154 7-160 9-162 (566)
29 2q28_A Oxalyl-COA decarboxylas 100.0 7.7E-42 2.6E-46 415.6 20.2 155 6-160 5-161 (564)
30 2pan_A Glyoxylate carboligase; 100.0 4.1E-41 1.4E-45 413.1 26.3 153 8-160 26-180 (616)
31 1q6z_A BFD, BFDC, benzoylforma 100.0 3.3E-41 1.1E-45 406.8 21.1 152 8-160 1-153 (528)
32 3lq1_A 2-succinyl-5-enolpyruvy 100.0 1.4E-40 4.7E-45 405.5 19.3 154 7-160 9-170 (578)
33 2uz1_A Benzaldehyde lyase; thi 100.0 2.6E-40 8.7E-45 402.1 21.5 155 6-160 1-156 (563)
34 3hww_A 2-succinyl-5-enolpyruvy 100.0 2.4E-40 8.3E-45 401.5 18.5 145 7-151 6-157 (556)
35 2x7j_A 2-succinyl-5-enolpyruvy 100.0 2.5E-40 8.5E-45 405.2 17.9 152 9-160 31-190 (604)
36 2pgn_A Cyclohexane-1,2-dione h 100.0 8.9E-40 3E-44 399.2 21.3 154 6-160 1-157 (589)
37 2iht_A Carboxyethylarginine sy 100.0 1.8E-39 6.2E-44 395.3 20.5 151 8-160 11-163 (573)
38 1v5e_A Pyruvate oxidase; oxido 100.0 2.3E-39 7.8E-44 395.5 21.2 153 8-160 3-157 (590)
39 2wvg_A PDC, pyruvate decarboxy 100.0 2.1E-39 7.3E-44 394.4 20.0 151 8-160 2-161 (568)
40 2vbi_A Pyruvate decarboxylase; 100.0 2.1E-39 7.2E-44 394.3 18.6 151 8-160 2-161 (566)
41 2vk8_A Pyruvate decarboxylase 100.0 1.6E-39 5.3E-44 395.3 15.6 151 6-160 1-162 (563)
42 2nxw_A Phenyl-3-pyruvate decar 100.0 4.6E-39 1.6E-43 391.0 18.8 156 4-160 16-178 (565)
43 1ovm_A Indole-3-pyruvate decar 100.0 4.4E-38 1.5E-42 381.6 18.5 150 6-160 2-162 (552)
44 2vbf_A Branched-chain alpha-ke 100.0 1.1E-37 3.8E-42 379.4 18.6 150 8-160 24-182 (570)
45 3cf4_G Acetyl-COA decarboxylas 99.5 8.2E-15 2.8E-19 150.2 3.2 130 486-622 21-167 (170)
46 1ytl_A Acetyl-COA decarboxylas 99.4 3.2E-14 1.1E-18 145.5 -1.3 101 489-591 24-142 (174)
47 1yd7_A 2-keto acid:ferredoxin 99.3 3.4E-12 1.2E-16 147.8 12.5 163 264-429 20-191 (395)
48 1yd7_A 2-keto acid:ferredoxin 99.3 5.9E-12 2E-16 145.8 10.8 155 6-163 20-183 (395)
49 2o1x_A 1-deoxy-D-xylulose-5-ph 99.1 3.9E-10 1.3E-14 138.3 15.6 240 174-426 119-481 (629)
50 2o1s_A 1-deoxy-D-xylulose-5-ph 99.0 3E-09 1E-13 130.3 17.6 242 176-426 119-479 (621)
51 3mos_A Transketolase, TK; thia 99.0 2.8E-09 9.7E-14 129.9 15.8 243 176-426 119-473 (616)
52 2c42_A Pyruvate-ferredoxin oxi 99.0 4.2E-10 1.4E-14 146.1 8.6 152 6-162 4-167 (1231)
53 2bfd_A 2-oxoisovalerate dehydr 98.9 3.4E-09 1.2E-13 122.5 10.8 84 156-245 143-228 (400)
54 1umd_A E1-alpha, 2-OXO acid de 98.8 1.3E-09 4.4E-14 125.0 5.3 92 931-1048 171-270 (367)
55 2e6k_A Transketolase; structur 98.8 1.1E-08 3.7E-13 125.7 13.9 116 306-426 398-516 (651)
56 3l84_A Transketolase; TKT, str 98.8 2.8E-09 9.6E-14 129.8 8.2 112 309-426 387-500 (632)
57 2r8o_A Transketolase 1, TK 1; 98.8 2.3E-08 8E-13 123.1 15.1 112 310-426 408-521 (669)
58 1umd_A E1-alpha, 2-OXO acid de 98.8 1.8E-08 6E-13 115.6 12.0 66 176-244 142-209 (367)
59 1w85_A Pyruvate dehydrogenase 98.8 3.7E-09 1.3E-13 120.9 6.0 119 865-1047 142-267 (368)
60 1w85_A Pyruvate dehydrogenase 98.7 1.3E-08 4.5E-13 116.4 8.1 67 175-244 139-207 (368)
61 1qs0_A 2-oxoisovalerate dehydr 98.7 6.8E-09 2.3E-13 120.1 5.7 121 865-1048 181-308 (407)
62 1qs0_A 2-oxoisovalerate dehydr 98.7 2.7E-08 9.2E-13 115.1 10.3 84 156-245 162-247 (407)
63 3l84_A Transketolase; TKT, str 98.7 5.7E-09 2E-13 127.1 4.3 135 856-1051 105-246 (632)
64 3m49_A Transketolase; alpha-be 98.7 9.8E-09 3.4E-13 126.1 6.0 134 858-1051 133-277 (690)
65 2bfd_A 2-oxoisovalerate dehydr 98.7 8.6E-09 2.9E-13 119.2 4.9 119 865-1047 162-287 (400)
66 3mos_A Transketolase, TK; thia 98.7 8.6E-09 2.9E-13 125.7 4.7 123 863-1050 119-245 (616)
67 2r8o_A Transketolase 1, TK 1; 98.7 9.8E-09 3.4E-13 126.5 4.8 136 857-1052 106-252 (669)
68 1gpu_A Transketolase; transfer 98.6 1E-08 3.5E-13 126.5 3.8 133 858-1050 109-253 (680)
69 3kom_A Transketolase; rossmann 98.6 1.7E-08 5.9E-13 123.6 5.0 133 858-1050 109-252 (663)
70 3uk1_A Transketolase; structur 98.6 1.2E-08 4.3E-13 125.4 3.5 94 931-1050 192-290 (711)
71 1itz_A Transketolase; calvin c 98.6 2.1E-08 7.2E-13 123.6 5.0 136 857-1052 119-266 (675)
72 2e6k_A Transketolase; structur 98.6 1.8E-08 6.2E-13 123.7 4.2 132 858-1050 111-253 (651)
73 3uk1_A Transketolase; structur 98.5 9.2E-08 3.1E-12 117.8 7.6 120 176-336 153-284 (711)
74 3kom_A Transketolase; rossmann 98.5 1.1E-07 3.7E-12 116.6 7.8 120 176-336 114-246 (663)
75 2o1s_A 1-deoxy-D-xylulose-5-ph 98.5 7.9E-08 2.7E-12 117.7 6.4 140 864-1051 120-288 (621)
76 3m49_A Transketolase; alpha-be 98.5 1.2E-07 4.1E-12 116.5 7.7 120 176-336 138-270 (690)
77 2o1x_A 1-deoxy-D-xylulose-5-ph 98.5 3.9E-08 1.3E-12 120.6 3.3 142 863-1052 121-294 (629)
78 1itz_A Transketolase; calvin c 98.5 1.3E-07 4.6E-12 116.4 8.0 121 176-337 125-259 (675)
79 1r9j_A Transketolase; domains, 98.5 8.6E-08 2.9E-12 118.0 5.8 135 857-1051 108-254 (673)
80 2c42_A Pyruvate-ferredoxin oxi 98.4 8.6E-08 2.9E-12 124.6 4.6 44 200-245 953-997 (1231)
81 2ozl_A PDHE1-A type I, pyruvat 98.4 1.9E-07 6.4E-12 106.6 6.4 117 865-1047 140-263 (365)
82 1gpu_A Transketolase; transfer 98.4 2.6E-07 8.9E-12 114.0 7.5 121 176-337 114-248 (680)
83 1r9j_A Transketolase; domains, 98.3 3.9E-07 1.3E-11 112.2 7.1 121 176-337 114-248 (673)
84 2ozl_A PDHE1-A type I, pyruvat 98.3 5.5E-07 1.9E-11 102.8 6.7 67 176-245 138-206 (365)
85 3rim_A Transketolase, TK; TPP, 97.9 3.6E-06 1.2E-10 103.4 4.5 95 931-1050 173-272 (700)
86 3rim_A Transketolase, TK; TPP, 97.8 1.8E-05 6.1E-10 97.3 6.2 120 176-336 131-266 (700)
87 2qtc_A Pyruvate dehydrogenase 97.7 5.6E-05 1.9E-09 95.1 10.1 100 176-293 190-298 (886)
88 2yic_A 2-oxoglutarate decarbox 97.6 6.7E-05 2.3E-09 94.2 8.0 66 177-245 244-325 (868)
89 2xt6_A 2-oxoglutarate decarbox 97.4 6.2E-05 2.1E-09 96.8 4.2 66 177-245 489-570 (1113)
90 2yic_A 2-oxoglutarate decarbox 97.3 0.00012 4.1E-09 91.9 5.4 93 931-1047 282-384 (868)
91 2jgd_A 2-oxoglutarate dehydrog 97.0 0.00059 2E-08 86.2 6.7 60 178-237 321-391 (933)
92 2qtc_A Pyruvate dehydrogenase 97.0 0.00046 1.6E-08 86.8 5.5 33 1020-1052 365-397 (886)
93 2jgd_A 2-oxoglutarate dehydrog 96.8 0.001 3.4E-08 84.2 6.3 94 931-1047 353-456 (933)
94 2xt6_A 2-oxoglutarate decarbox 96.6 0.0015 5E-08 84.3 6.1 93 931-1047 527-629 (1113)
95 3ahc_A Phosphoketolase, xylulo 94.5 0.16 5.4E-06 63.2 12.1 99 177-297 174-280 (845)
96 3glr_A NAD-dependent deacetyla 94.2 0.1 3.5E-06 57.1 8.7 87 553-652 192-280 (285)
97 1j8f_A SIRT2, sirtuin 2, isofo 93.1 0.11 3.8E-06 58.0 6.8 72 552-623 214-303 (323)
98 1efv_A Electron transfer flavo 90.5 0.36 1.2E-05 53.6 7.0 113 502-623 199-313 (315)
99 2hjh_A NAD-dependent histone d 90.4 0.39 1.3E-05 54.2 7.3 69 552-623 249-317 (354)
100 3ahc_A Phosphoketolase, xylulo 90.2 0.41 1.4E-05 59.6 7.7 134 851-1049 161-322 (845)
101 4iao_A NAD-dependent histone d 89.8 0.49 1.7E-05 55.0 7.4 69 552-623 387-455 (492)
102 2fsv_C NAD(P) transhydrogenase 89.6 0.69 2.4E-05 46.7 7.4 133 488-622 35-202 (203)
103 1pno_A NAD(P) transhydrogenase 89.6 0.74 2.5E-05 45.5 7.4 131 489-622 13-179 (180)
104 1qs0_B 2-oxoisovalerate dehydr 89.2 1.4 4.8E-05 49.3 10.6 118 305-430 52-180 (338)
105 1djl_A Transhydrogenase DIII; 89.1 0.76 2.6E-05 46.6 7.3 134 488-623 34-202 (207)
106 1q1a_A HST2 protein; ternary c 88.9 0.41 1.4E-05 52.6 5.7 69 555-623 208-278 (289)
107 1d4o_A NADP(H) transhydrogenas 88.4 0.84 2.9E-05 45.3 6.8 133 489-623 12-179 (184)
108 1efp_A ETF, protein (electron 88.0 0.53 1.8E-05 52.1 5.9 112 502-622 194-307 (307)
109 1q14_A HST2 protein; histone d 87.7 0.64 2.2E-05 52.6 6.5 69 555-623 216-286 (361)
110 1o97_D Electron transferring f 87.7 0.54 1.8E-05 52.3 5.8 114 502-623 204-319 (320)
111 1w85_B Pyruvate dehydrogenase 87.1 1 3.6E-05 50.1 7.8 116 305-428 50-176 (324)
112 2ozl_B PDHE1-B, pyruvate dehyd 87.0 0.85 2.9E-05 51.2 7.0 114 305-428 62-188 (341)
113 1s5p_A NAD-dependent deacetyla 86.7 0.55 1.9E-05 49.9 4.9 70 552-623 161-231 (235)
114 2bfd_B 2-oxoisovalerate dehydr 86.4 0.89 3E-05 51.1 6.7 118 305-430 67-196 (342)
115 1umd_B E1-beta, 2-OXO acid deh 85.9 1.3 4.4E-05 49.3 7.7 117 305-429 51-178 (324)
116 2bru_C NAD(P) transhydrogenase 85.8 0.94 3.2E-05 44.9 5.6 134 486-621 17-185 (186)
117 3pki_A NAD-dependent deacetyla 84.4 1.1 3.8E-05 50.1 6.1 70 552-623 200-270 (355)
118 1umd_B E1-beta, 2-OXO acid deh 83.7 6.6 0.00023 43.5 12.2 109 47-163 51-170 (324)
119 1yc5_A NAD-dependent deacetyla 83.5 0.71 2.4E-05 49.4 4.0 69 553-623 175-244 (246)
120 3k35_A NAD-dependent deacetyla 83.4 1.2 3.9E-05 49.4 5.6 70 552-623 200-270 (318)
121 1ma3_A SIR2-AF2, transcription 82.5 0.86 2.9E-05 48.9 4.2 70 552-623 177-247 (253)
122 1m2k_A Silent information regu 81.4 1 3.6E-05 48.2 4.3 69 553-623 172-241 (249)
123 3riy_A NAD-dependent deacetyla 80.4 1.2 4.3E-05 48.3 4.5 65 553-619 207-272 (273)
124 2ozl_B PDHE1-B, pyruvate dehyd 79.7 10 0.00035 42.4 11.9 109 47-165 62-183 (341)
125 3c2q_A Uncharacterized conserv 78.9 5.1 0.00018 43.8 8.5 96 525-623 236-339 (345)
126 1qs0_B 2-oxoisovalerate dehydr 78.7 8.9 0.00031 42.7 11.0 109 47-163 52-171 (338)
127 1w85_B Pyruvate dehydrogenase 78.5 6.3 0.00021 43.7 9.6 109 47-163 50-169 (324)
128 1ik6_A Pyruvate dehydrogenase; 77.0 2.4 8.1E-05 48.1 5.6 116 305-429 98-225 (369)
129 1ik6_A Pyruvate dehydrogenase; 72.8 8.9 0.00031 43.3 9.0 109 47-163 98-217 (369)
130 2bfd_B 2-oxoisovalerate dehydr 69.9 7.4 0.00025 43.5 7.5 109 47-163 67-187 (342)
131 3u31_A SIR2A, transcriptional 67.1 2.2 7.4E-05 46.8 2.2 69 553-623 211-280 (290)
132 3rot_A ABC sugar transporter, 57.4 41 0.0014 35.7 10.3 153 265-431 111-281 (297)
133 3i9v_3 NADH-quinone oxidoreduc 49.2 22 0.00076 44.2 7.2 79 486-570 323-403 (783)
134 3k9c_A Transcriptional regulat 45.1 1.3E+02 0.0044 31.5 11.8 88 265-353 109-209 (289)
135 3o74_A Fructose transport syst 43.8 1.1E+02 0.0038 31.4 10.8 89 265-353 103-204 (272)
136 3qk7_A Transcriptional regulat 43.7 1.9E+02 0.0065 30.3 12.8 88 265-352 109-210 (294)
137 3jy6_A Transcriptional regulat 41.8 1.9E+02 0.0065 29.8 12.3 130 201-353 64-205 (276)
138 2f62_A Nucleoside 2-deoxyribos 40.8 44 0.0015 33.0 6.4 117 501-623 10-159 (161)
139 2iv2_X Formate dehydrogenase H 38.4 31 0.0011 42.3 6.1 113 486-598 81-209 (715)
140 3k4h_A Putative transcriptiona 38.2 2.3E+02 0.0077 29.4 12.3 88 265-353 114-216 (292)
141 3gv0_A Transcriptional regulat 36.9 83 0.0028 33.0 8.5 118 216-352 79-211 (288)
142 2fep_A Catabolite control prot 36.8 2.2E+02 0.0077 29.6 12.0 86 265-351 116-217 (289)
143 3ksm_A ABC-type sugar transpor 36.7 1.2E+02 0.0042 31.1 9.7 121 215-352 73-210 (276)
144 2rgy_A Transcriptional regulat 35.9 2E+02 0.0068 30.0 11.4 87 265-351 111-211 (290)
145 3c3k_A Alanine racemase; struc 35.7 2.1E+02 0.0072 29.7 11.5 87 265-351 107-206 (285)
146 3bbl_A Regulatory protein of L 35.2 1.9E+02 0.0066 30.0 11.1 86 265-351 108-210 (287)
147 2o20_A Catabolite control prot 34.8 2.2E+02 0.0075 30.4 11.7 86 265-351 163-261 (332)
148 3cs3_A Sugar-binding transcrip 33.3 1.2E+02 0.004 31.6 8.9 86 265-351 101-199 (277)
149 3gbv_A Putative LACI-family tr 33.3 1.8E+02 0.0061 30.3 10.5 150 265-429 116-287 (304)
150 3egc_A Putative ribose operon 32.6 1.7E+02 0.0059 30.4 10.2 89 265-353 108-210 (291)
151 3jvd_A Transcriptional regulat 31.7 76 0.0026 34.4 7.3 89 265-353 157-255 (333)
152 3l49_A ABC sugar (ribose) tran 31.6 1.4E+02 0.0048 31.0 9.2 90 265-354 106-216 (291)
153 3u5c_A 40S ribosomal protein S 31.4 1.4E+02 0.0049 31.6 8.8 73 488-571 56-130 (252)
154 3trj_A Phosphoheptose isomeras 31.1 2E+02 0.0067 29.0 9.8 100 10-109 34-153 (201)
155 2xzm_B RPS0E; ribosome, transl 30.1 1.4E+02 0.0047 31.5 8.4 74 487-571 51-127 (241)
156 3tb6_A Arabinose metabolism tr 29.6 2.2E+02 0.0075 29.5 10.4 120 215-352 88-224 (298)
157 3h5t_A Transcriptional regulat 29.1 1.4E+02 0.0047 32.6 8.9 87 265-351 172-290 (366)
158 2h3h_A Sugar ABC transporter, 28.8 4.4E+02 0.015 27.5 12.8 87 265-351 104-204 (313)
159 3iz6_A 40S ribosomal protein S 28.8 1.9E+02 0.0064 31.4 9.3 73 488-571 61-135 (305)
160 3h5o_A Transcriptional regulat 28.7 2.8E+02 0.0095 29.7 11.3 87 265-351 161-261 (339)
161 4ds3_A Phosphoribosylglycinami 27.7 1.3E+02 0.0044 31.0 7.6 34 930-969 12-45 (209)
162 1vi6_A 30S ribosomal protein S 27.5 1.5E+02 0.0053 30.4 8.1 74 487-571 54-128 (208)
163 3bch_A 40S ribosomal protein S 27.2 2.2E+02 0.0074 30.2 9.3 73 488-571 90-164 (253)
164 3brs_A Periplasmic binding pro 26.8 3.2E+02 0.011 28.1 11.1 86 266-351 113-212 (289)
165 3brq_A HTH-type transcriptiona 26.7 3.4E+02 0.012 27.9 11.2 85 266-351 123-222 (296)
166 3d8u_A PURR transcriptional re 26.0 4.1E+02 0.014 27.0 11.6 86 265-351 103-203 (275)
167 1tk9_A Phosphoheptose isomeras 25.7 1.8E+02 0.0061 28.4 8.3 97 11-107 31-147 (188)
168 2hsg_A Glucose-resistance amyl 24.7 3.7E+02 0.013 28.5 11.3 183 211-427 124-325 (332)
169 2r8b_A AGR_C_4453P, uncharacte 24.3 3.3E+02 0.011 27.2 10.3 35 70-104 61-95 (251)
170 3kke_A LACI family transcripti 23.9 2.9E+02 0.01 28.9 10.1 87 265-351 114-219 (303)
171 3kjx_A Transcriptional regulat 23.7 2.2E+02 0.0075 30.6 9.3 88 265-352 168-270 (344)
172 2zkq_b 40S ribosomal protein S 23.6 2.4E+02 0.0084 30.5 9.1 74 487-571 56-131 (295)
173 3hut_A Putative branched-chain 22.9 86 0.0029 33.9 5.7 145 200-359 70-224 (358)
174 1tk9_A Phosphoheptose isomeras 22.6 1.2E+02 0.004 29.8 6.1 100 268-367 30-149 (188)
175 1zxx_A 6-phosphofructokinase; 22.5 2.6E+02 0.0088 30.7 9.2 33 269-301 81-113 (319)
176 1e2b_A Enzyme IIB-cellobiose; 22.5 53 0.0018 30.0 3.1 59 500-571 4-62 (106)
177 2yva_A DNAA initiator-associat 22.5 1.6E+02 0.0056 29.0 7.3 100 268-367 29-148 (196)
178 3trj_A Phosphoheptose isomeras 22.3 1.2E+02 0.004 30.7 6.1 101 268-369 34-155 (201)
179 2yva_A DNAA initiator-associat 22.0 2.9E+02 0.0099 27.1 9.1 99 10-108 29-147 (196)
180 1hi9_A Dciaa, dipeptide transp 21.6 15 0.00052 39.6 -0.9 73 351-423 141-221 (274)
181 2xbl_A Phosphoheptose isomeras 21.3 1.9E+02 0.0064 28.5 7.4 37 71-107 116-153 (198)
182 2nap_A Protein (periplasmic ni 21.0 1.2E+02 0.0041 37.1 6.9 128 486-622 82-236 (723)
183 3huu_A Transcription regulator 21.0 1.6E+02 0.0056 30.9 7.3 175 217-427 97-288 (305)
184 3dbi_A Sugar-binding transcrip 20.9 2.8E+02 0.0095 29.6 9.3 88 265-352 164-265 (338)
185 2iks_A DNA-binding transcripti 20.3 3.2E+02 0.011 28.4 9.4 86 265-351 121-219 (293)
186 3l6u_A ABC-type sugar transpor 20.0 3.8E+02 0.013 27.6 9.9 89 266-354 112-220 (293)
187 3nbm_A PTS system, lactose-spe 20.0 73 0.0025 29.2 3.5 59 499-570 6-64 (108)
No 1
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=100.00 E-value=7.2e-79 Score=741.62 Aligned_cols=551 Identities=32% Similarity=0.535 Sum_probs=440.0
Q ss_pred ccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 264 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 264 ~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
+..++++++|++.|+++||+++||+||++++++++++.+++|++|.++||++|+|||+||||+||||+||+||||||++|
T Consensus 7 ~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~i~~~~E~~Aa~~A~GyAr~tg~pgv~~~TsGpG~~N 86 (568)
T 2c31_A 7 VELTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAGYAASIAGYIEGKPGVCLTVSAPGFLN 86 (568)
T ss_dssp CCEEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHTTCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHH
T ss_pred CCcccHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHhCCCcEEEeCcHHHHHHHHHHHHHHhCCCEEEEEcCCccHHH
Confidence 34689999999999999999999999999999999997778999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCC--CCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEE
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEG--IGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYL 421 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g--~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L 421 (1065)
+++||++|+.+++|||+|||++|.++++ ++++|++||.++|+++|||++++++++++++.+++|++.|.+++||||||
T Consensus 87 ~~~~i~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l 166 (568)
T 2c31_A 87 GVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYV 166 (568)
T ss_dssp HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTCCCHHHHSGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEE
T ss_pred HHHHHHHHHhcCCCEEEEccCCCccccCCCCCcccccCHHHHHHhhhheeeecCCHHHHHHHHHHHHHHhcCCCCceEEE
Confidence 9999999999999999999999999888 69999999999999999999999999999999999999999999999999
Q ss_pred ecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCC
Q psy14416 422 DFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKA 501 (1065)
Q Consensus 422 ~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~Akr 501 (1065)
+||.|++.++.+..... .+.. . + ........++.+.+++++++|++|||
T Consensus 167 ~iP~dv~~~~~~~~~~~-~~~~--~----------------------~------~~~~~~~~~~~~~i~~~~~~l~~a~r 215 (568)
T 2c31_A 167 DLPAKLFGQTISVEEAN-KLLF--K----------------------P------IDPAPAQIPAEDAIARAADLIKNAKR 215 (568)
T ss_dssp EEETHHHHCEEEHHHHH-HHCC--C----------------------C------SCSSCCCCCCHHHHHHHHHHHHTCSS
T ss_pred eCCHHHhhccccccccc-cccc--c----------------------c------cCCCCCCCCCHHHHHHHHHHHHhCCC
Confidence 99999886654321000 0000 0 0 00112235678899999999999999
Q ss_pred cEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHHHHhhhcCCCEEEEeCCccccccccCCCccc
Q psy14416 502 PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWILHFGRAPRF 581 (1065)
Q Consensus 502 PvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~~~~~g~~~~~ 581 (1065)
|+|++|.++.++++.+++++|||++|+||+++++|||.+|++||+++|...++++++||+||.+|+++++..+.++...|
T Consensus 216 pvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~~p~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~ 295 (568)
T 2c31_A 216 PVIMLGKGAAYAQCDDEIRALVEETGIPFLPMGMAKGLLPDNHPQSAAATRAFALAQCDVCVLIGARLNWLMQHGKGKTW 295 (568)
T ss_dssp EEEEECHHHHHHTCHHHHHHHHHHHTCCEEECGGGTTSSCTTCTTBCGGGHHHHHHHCSEEEEESCCCSGGGGGGCSGGG
T ss_pred CEEEECcccccccHHHHHHHHHHHhCCCEEecccccccCCCCChhhcchHHHhhhccCCEEEEECCCCccccccCccccc
Confidence 99999999877777899999999999999999999999999999999987777889999999999999877665655556
Q ss_pred c-CCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhhhh
Q psy14416 582 K-SNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILVIV 660 (1065)
Q Consensus 582 ~-~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 660 (1065)
. ++.++||||.|+.++++++.+++.+++|++.+|++|.+.++... .....|.+++++..+.......+..
T Consensus 296 ~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~-----~~~~~w~~~~~~~~~~~~~~~~~~~---- 366 (568)
T 2c31_A 296 GDELKKYVQIDIQANEMDSNQPIAAPVVGDIKSAVSLLRKALKGAP-----KADAEWTGALKAKVDGNKAKLAGKM---- 366 (568)
T ss_dssp TTSCCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHHTTCC-----CCCHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred CCCCCeEEEEeCCHHHhcCCcCCCceeeCCHHHHHHHHHHhhhhcC-----CCcHHHHHHHHHHHHhhhhhhhhhh----
Confidence 5 67899999999999999999999999999999999998875211 1245788776655443322211110
Q ss_pred ccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcC--CCcEEEEECCCCcCccc
Q psy14416 661 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVL--PVILVIVNNNGIYGGFD 738 (1065)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~L--P~d~ilv~d~G~~~~~~ 738 (1065)
.. . .+..|+ + +..++. .|.+.+ |++.+++.|+|+.+.|.
T Consensus 367 --------------~~-----~-~~~~~~-----~---~~~~~~-----------~l~~~l~~~~~~iv~~dg~~~~~~~ 407 (568)
T 2c31_A 367 --------------TA-----E-TPSGMM-----N---YSNSLG-----------VVRDFMLANPDISLVNEGANALDNT 407 (568)
T ss_dssp --------------HC-----C-CCTTCB-----C---HHHHHH-----------HHHHHHHHCCSSEEEEESSHHHHHH
T ss_pred --------------cc-----c-ccCCCc-----C---HHHHHH-----------HHHHHhcCCCCeEEEECChhHHHHH
Confidence 00 0 002345 6 777888 999999 99999998876533321
Q ss_pred ccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccccc
Q psy14416 739 ETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGE 818 (1065)
Q Consensus 739 ~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 818 (1065)
..++ +...| +.+
T Consensus 408 ~~~~-----------------------------------------------~~~~p-------~~~-------------- 419 (568)
T 2c31_A 408 RMIV-----------------------------------------------DMLKP-------RKR-------------- 419 (568)
T ss_dssp HHHC-----------------------------------------------CCCST-------TCE--------------
T ss_pred HHHh-----------------------------------------------cccCC-------CeE--------------
Confidence 1100 00011 001
Q ss_pred eeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEEE
Q psy14416 819 VTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 898 (1065)
Q Consensus 819 ~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 898 (1065)
-|+|.+|+| |+++|+++ |++++ |+++|+
T Consensus 420 ------------~~~g~~g~~----------------------------G~~l~~Ai--Gaala---------~~~~vv- 447 (568)
T 2c31_A 420 ------------LDSGTWGVM----------------------------GIGMGYCV--AAAAV---------TGKPVI- 447 (568)
T ss_dssp ------------EESTTTTCS----------------------------SCHHHHHH--HHHHH---------HCSCEE-
T ss_pred ------------EcCCCCccc----------------------------cccHHHHH--HHHhC---------CCCcEE-
Confidence 135557777 88888888 77775 467899
Q ss_pred ccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchh
Q psy14416 899 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEA 978 (1065)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~ 978 (1065)
+++|||+| +|+.++++++ +++++|++|||+||+|||.+....
T Consensus 448 --------------------------------~i~GDGsf-~~~~~el~ta-----~~~~l~~~ivv~NN~~~~~~~~~~ 489 (568)
T 2c31_A 448 --------------------------------AVEGDSAF-GFSGMELETI-----CRYNLPVTVIIMNNGGIYKGNEAD 489 (568)
T ss_dssp --------------------------------EEEEHHHH-HTTGGGHHHH-----HHTTCCEEEEEEESSBSSCSCCCC
T ss_pred --------------------------------EEEcchHh-hccHHHHHHH-----HHhCCCeEEEEEeCchhHHHHHHH
Confidence 99999999 9999999999 999999999999999977754322
Q ss_pred hHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCcchhhh
Q psy14416 979 TYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKPQNFSW 1058 (1065)
Q Consensus 979 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~ 1058 (1065)
.+ +. ... .+. .+.+||.++|++||+++++|++.+||+++|+++++. ++|+||||.++++++.+.+..+|
T Consensus 490 ~~------~~--~~~-~~~-~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~-~~p~liev~~~~~~~~~~~~~~~ 558 (568)
T 2c31_A 490 PQ------PG--VIS-CTR-LTRGRYDMMMEAFGGKGYVANTPAELKAALEEAVAS-GKPCLINAMIDPDAGVESGRIKS 558 (568)
T ss_dssp SB------TT--BCC-TTB-CCCCCHHHHHHTTTCEEEEESSHHHHHHHHHHHHHH-TSCEEEEEEBCTTSSCC------
T ss_pred hh------cC--Ccc-cCc-CCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhC-CCCEEEEEEeccccCCCcccccc
Confidence 10 00 111 122 467999999999999999999999999999999976 89999999999999999999999
Q ss_pred hHhh
Q psy14416 1059 LTNL 1062 (1065)
Q Consensus 1059 ~~~~ 1062 (1065)
++.-
T Consensus 559 ~~~~ 562 (568)
T 2c31_A 559 LNVV 562 (568)
T ss_dssp ----
T ss_pred cchh
Confidence 8654
No 2
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=100.00 E-value=8.2e-79 Score=740.71 Aligned_cols=546 Identities=34% Similarity=0.579 Sum_probs=442.9
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
+.++++++|++.|+++||+++||+||++++++++++.+++|++|.++||++|+|||+||||+||||+||+||||||++|+
T Consensus 6 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~i~~~hE~~Aa~~A~Gyar~tg~pgv~~~TsGpG~~N~ 85 (564)
T 2q28_A 6 QMTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAEGIRYIGFRHEQSAGYAAAASGFLTQKPGICLTVSAPGFLNG 85 (564)
T ss_dssp CEEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHTTCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHH
T ss_pred ccCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEeeCCHHHHHHHHHHHHHHhCCCEEEEEccCchHHHH
Confidence 45789999999999999999999999999999999977789999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCC--CCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEe
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEG--IGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLD 422 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g--~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~ 422 (1065)
++||++|+.+++|||+|||++|.++++ ++++|++||.++|+++|||++++++++++++.+++|++.|.+++||||||+
T Consensus 86 ~~gi~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~ 165 (564)
T 2q28_A 86 LTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPGGVYLD 165 (564)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCHHHHHTTSCCTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred HHHHHHHHhcCCCEEEEeCCCCccccCCCCCccccccHHHHHHHhhheeeecCCHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 999999999999999999999999877 799999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhccccc--cCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCC
Q psy14416 423 FPANLLAQRINQS--ALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAK 500 (1065)
Q Consensus 423 iP~Dv~~~~~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~Ak 500 (1065)
||.|++.++++.. .....+. ........++.+.+++++++|++||
T Consensus 166 iP~dv~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~i~~~~~~l~~a~ 212 (564)
T 2q28_A 166 LPANVLAATMEKDEALTTIVKV---------------------------------ENPSPALLPCPKSVTSAISLLAKAE 212 (564)
T ss_dssp EEHHHHHCEEEHHHHHHTCCCC---------------------------------SCSSCCEEECHHHHHHHHHHHHHCS
T ss_pred cCHHHhhccccccccccccccc---------------------------------cCCCCCCCCCHHHHHHHHHHHHcCC
Confidence 9999987654321 0000000 0001122456788999999999999
Q ss_pred CcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHHHHhhhcCCCEEEEeCCccccccccCCCcc
Q psy14416 501 APLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWILHFGRAPR 580 (1065)
Q Consensus 501 rPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~~~~~g~~~~ 580 (1065)
||+|++|.++.++++.+++++|||++|+||+++++|||.++++||+++|...++++++||+||.+|+++.+....++ ..
T Consensus 213 rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~~~-~~ 291 (564)
T 2q28_A 213 RPLIILGKGAAYSQADEQLREFIESAQIPFLPMSMAKGILEDTHPLSAAAARSFALANADVVMLVGARLNWLLAHGK-KG 291 (564)
T ss_dssp SEEEEECHHHHHHTCHHHHHHHHHHHTCCEEECGGGTTSSCTTCTTBCGGGHHHHHHHCSEEEEESCCCSGGGGGGT-TT
T ss_pred CcEEEECcccccccHHHHHHHHHHHhCCCEEeccCccccCCCCChhhcChHHHhHhhcCCEEEEECCcccccccccc-cc
Confidence 99999999987777789999999999999999999999999999999998777788999999999999987555444 44
Q ss_pred ccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhhhh
Q psy14416 581 FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILVIV 660 (1065)
Q Consensus 581 ~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 660 (1065)
|.++.++||||.|+..+++++..++.+++|++.+|++|.+.++... ......|.+++++..+.+.....+..
T Consensus 292 ~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~----~~~~~~w~~~~~~~~~~~~~~~~~~~---- 363 (564)
T 2q28_A 292 WAADTQFIQLDIEPQEIDSNRPIAVPVVGDIASSMQGMLAELKQNT----FTTPLVWRDILNIHKQQNAQKMHEKL---- 363 (564)
T ss_dssp SCTTCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHHHHSC----CCCCHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred cCCCCeEEEEeCCHHHhcCCCCCCeEEEcCHHHHHHHHHHHhhhcC----cCCcHHHHHHHHHHHHhhhhhhhhhh----
Confidence 5567899999999999999999999999999999999998875311 11246788776655443322221110
Q ss_pred ccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcC--CCcEEEEECCCCcCccc
Q psy14416 661 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVL--PVILVIVNNNGIYGGFD 738 (1065)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~L--P~d~ilv~d~G~~~~~~ 738 (1065)
. ....|+ + +..++. .|.+.+ |++.+++.|+|+.+.|.
T Consensus 364 --------------~--------~~~~~~-----~---~~~~~~-----------~l~~~l~~~~d~ivv~dg~~~~~~~ 402 (564)
T 2q28_A 364 --------------S--------TDTQPL-----N---YFNALS-----------AVRDVLRENQDIYLVNEGANTLDNA 402 (564)
T ss_dssp --------------T--------CCCSSB-----C---HHHHHH-----------HHHHHHTTCTTCEEEEESSHHHHHH
T ss_pred --------------c--------cCCCCc-----C---HHHHHH-----------HHHHHhcCCCCEEEEECCchHHHHH
Confidence 0 112356 6 778888 999999 99999998875433221
Q ss_pred ccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccccc
Q psy14416 739 ETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGE 818 (1065)
Q Consensus 739 ~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 818 (1065)
..++ +...| +.+.
T Consensus 403 ~~~~-----------------------------------------------~~~~p-------~~~~------------- 415 (564)
T 2q28_A 403 RNII-----------------------------------------------DMYKP-------RRRL------------- 415 (564)
T ss_dssp HHHS-----------------------------------------------CCCSS-------SCEE-------------
T ss_pred HHHh-----------------------------------------------cccCC-------CeEe-------------
Confidence 1100 00011 0001
Q ss_pred eeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEEE
Q psy14416 819 VTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 898 (1065)
Q Consensus 819 ~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 898 (1065)
|+|.+|+| |+++|+++ |++++ |+++|+
T Consensus 416 -------------~~g~~g~~----------------------------G~~l~~Ai--Gaa~a---------~~~~vv- 442 (564)
T 2q28_A 416 -------------DCGTWGVM----------------------------GIGMGYAI--GASVT---------SGSPVV- 442 (564)
T ss_dssp -------------ESTTTTCT----------------------------TCHHHHHH--HHHHH---------HCSCEE-
T ss_pred -------------cCCCCCcc----------------------------cchHHHHH--HHhhc---------CCCcEE-
Confidence 35556776 88888888 77775 567899
Q ss_pred ccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchh
Q psy14416 899 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEA 978 (1065)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~ 978 (1065)
+++|||+| +|+.++++++ +++++|++|||+||+|+|.+....
T Consensus 443 --------------------------------~i~GDGsf-~~~~~el~ta-----~~~~l~~~ivv~NN~~~~~~~~~~ 484 (564)
T 2q28_A 443 --------------------------------AIEGDSAF-GFSGMEIETI-----CRYNLPVTIVIFNNGGIYRGDGVD 484 (564)
T ss_dssp --------------------------------EEEEHHHH-HTTGGGHHHH-----HHTTCCEEEEEEECSBSSCSCCCC
T ss_pred --------------------------------EEEcchHh-hccHHHHHHH-----HHhCCCeEEEEEeCchhHHHHHHH
Confidence 99999999 9999999999 999999999999999977765431
Q ss_pred hHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCcchhhh
Q psy14416 979 TYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKPQNFSW 1058 (1065)
Q Consensus 979 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~ 1058 (1065)
. ...+. ...+...+.+||.++|++||+++++|++.+||+++|+++++. ++|+||||.++++++.+....+|
T Consensus 485 ~----~~~~~----~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~-~~p~liev~~~~~~~~~~~~~~~ 555 (564)
T 2q28_A 485 L----SGAGA----PSPTDLLHHARYDKLMDAFRGVGYNVTTTDELRHALTTGIQS-RKPTIINVVIDPAAGTESGHITK 555 (564)
T ss_dssp T----TSSCC----CCTTBCCTTCCGGGGGGGGTCEEEEECSHHHHHHHHHHHHHH-TSCEEEEEEBCTTSSCCCSCCC-
T ss_pred H----hccCC----ccccccCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhC-CCCEEEEEEeccccCCCcccccc
Confidence 0 00011 112334568999999999999999999999999999999976 89999999999999999888889
Q ss_pred hH
Q psy14416 1059 LT 1060 (1065)
Q Consensus 1059 ~~ 1060 (1065)
+.
T Consensus 556 ~~ 557 (564)
T 2q28_A 556 LN 557 (564)
T ss_dssp --
T ss_pred cC
Confidence 84
No 3
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=100.00 E-value=2.4e-77 Score=725.25 Aligned_cols=532 Identities=20% Similarity=0.269 Sum_probs=436.0
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
.++++++|++.|+++||+++||+||+++++|++++.++ +|++|.++||++|+|||+||||+||||+||+||+|||++|+
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~dal~~~~~i~~i~~~~E~~Aa~~A~GyAr~tg~~~v~~~TsGpG~~N~ 81 (549)
T 3eya_A 2 KQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHL 81 (549)
T ss_dssp CCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHHCSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTT
T ss_pred CccHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHHhcCCCeEEEeCChHHHHHHHHHHHHHhCCCEEEEeCCCCcHhhh
Confidence 46899999999999999999999999999999999775 79999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecC
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP 424 (1065)
++||++|+.+++|||+|||++|.+..+++++|++||.++|+++|||++++++++++++.+++|++.|.+. +|||||+||
T Consensus 82 ~~gi~~A~~~~vPvl~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~-~GPV~l~iP 160 (549)
T 3eya_A 82 INGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLN-RGVSVVVLP 160 (549)
T ss_dssp HHHHHHHHHTTCCEEEEEEESCGGGTTSCCTTCCCHHHHTSTTCSEEEECCSGGGHHHHHHHHHHHHHHT-TSEEEEEEE
T ss_pred HHHHHHHHhhCCCEEEEeCCCchhhcCCCCCCccCHHHHHhhhhheEEEeCCHHHHHHHHHHHHHHHhhC-CCCEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999984 699999999
Q ss_pred hhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEE
Q psy14416 425 ANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLV 504 (1065)
Q Consensus 425 ~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvI 504 (1065)
.|++..+.+..... . |. ........++++.+++++++|++||||+|
T Consensus 161 ~dv~~~~~~~~~~~---~-------~~------------------------~~~~~~~~~~~~~i~~~~~~l~~A~rpvI 206 (549)
T 3eya_A 161 GDVALKPAPEGATM---H-------WY------------------------HAPQPVVTPEEEELRKLAQLLRYSSNIAL 206 (549)
T ss_dssp HHHHTSBCCTTCCC---C-------CC------------------------CCCCCEEECCHHHHHHHHHHHHTCCSEEE
T ss_pred hhHhhcccCccccc---c-------cc------------------------ccCCCCCCCCHHHHHHHHHHHHhCCCcEE
Confidence 99998876532211 0 00 01112234678899999999999999999
Q ss_pred EEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccCC
Q psy14416 505 IIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFGR 577 (1065)
Q Consensus 505 lvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g~ 577 (1065)
++|.++. ++.+++++|+|++|+||++++++||.++++||+++|. ..++++++||+||.+|++++++. +
T Consensus 207 l~G~g~~--~a~~~l~~lae~~~~Pv~~t~~gkg~~~~~hp~~~G~~G~~~~~~~~~~~~~aDlvl~iG~~~~~~~---~ 281 (549)
T 3eya_A 207 MCGSGCA--GAHKELVEFAGKIKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFPYRA---F 281 (549)
T ss_dssp EECGGGT--TCHHHHHHHHHHHTCCEEECGGGHHHHSSSCTTBCCCCSTTSCHHHHHHHHHCSEEEEESCCCCCGG---G
T ss_pred EECCCch--HHHHHHHHHHHHhCCCEEECCccCcCCCCCCcccccCCCCCCCHHHHHHHHhCCEEEEECCCCCccc---c
Confidence 9999874 5678999999999999999999999999999999872 45677889999999999987642 2
Q ss_pred CccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhh
Q psy14416 578 APRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVIL 657 (1065)
Q Consensus 578 ~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ 657 (1065)
++++.++||||.|+.++++.+..++.+++|+..+|++|.+.+.. ....+|.+.|++..+++++...+..
T Consensus 282 ---~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~- 350 (549)
T 3eya_A 282 ---YPTDAKIIQIDINPASIGAHSKVDMALVGDIKSTLRALLPLVEE-------KADRKFLDKALEDYRDARKGLDDLA- 350 (549)
T ss_dssp ---SCSSSEEEEEESCGGGTTSSSCCSEEEECCHHHHHHHHGGGSCC-------CCCCHHHHHHHHHHHHHHHHHHHTS-
T ss_pred ---CCCCCeEEEEeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHhccc-------cCcHHHHHHHHHHHHHHHHHHhhhc-
Confidence 33567899999999999999999999999999999999887752 2345788888777666554432220
Q ss_pred hhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCcc
Q psy14416 658 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 737 (1065)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~ 737 (1065)
. ....++ + +..+++ .|.+.+|++++++.|+|.+..|
T Consensus 351 ------------------~-------~~~~~~-----~---~~~~~~-----------~l~~~l~~~~ivv~d~G~~~~~ 386 (549)
T 3eya_A 351 ------------------K-------PSEKAI-----H---PQYLAQ-----------QISHFAADDAIFTCDVGTPTVW 386 (549)
T ss_dssp ------------------C-------CCSSCB-----C---HHHHHH-----------HHHHHSCTTCEEEECTTHHHHH
T ss_pred ------------------C-------CCCCCc-----C---HHHHHH-----------HHHhhCCCCCEEEEcCcHHHHH
Confidence 0 112356 6 778888 9999999999999999976666
Q ss_pred cccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccccc
Q psy14416 738 DETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESG 817 (1065)
Q Consensus 738 ~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 817 (1065)
..+++.. . -|.+ ++.
T Consensus 387 ~~~~~~~------~---~~~~---------------------------------------------~~~----------- 401 (549)
T 3eya_A 387 AARYLKM------N---GKRR---------------------------------------------LLG----------- 401 (549)
T ss_dssp HHHHCCC------C---SSCE---------------------------------------------EEC-----------
T ss_pred HHHhCcc------C---CCCc---------------------------------------------EEe-----------
Confidence 4432211 0 0000 000
Q ss_pred ceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEE
Q psy14416 818 EVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVI 897 (1065)
Q Consensus 818 ~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~ 897 (1065)
++-+|+| |+++++++ |++++. |+++|+
T Consensus 402 ---------------~~~~g~m----------------------------G~~l~~Ai--Gaala~--------~~~~vv 428 (549)
T 3eya_A 402 ---------------SFNHGSM----------------------------ANAMPQAL--GAQATE--------PERQVV 428 (549)
T ss_dssp ---------------CTTTCCT----------------------------TCHHHHHH--HHHHHS--------TTSCEE
T ss_pred ---------------CCCCchh----------------------------hhHHHHHH--HHHHhC--------CCCcEE
Confidence 1223444 88888877 889988 889999
Q ss_pred EccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCch
Q psy14416 898 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 977 (1065)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~ 977 (1065)
+++|||+| +|+.++++++ +++++|+++||+||+| |+.+..
T Consensus 429 ---------------------------------~i~GDGs~-~~~~~~L~ta-----~~~~l~~~ivv~nN~~-~g~~~~ 468 (549)
T 3eya_A 429 ---------------------------------AMCGDGGF-SMLMGDFLSV-----VQMKLPVKIVVFNNSV-LGFVAM 468 (549)
T ss_dssp ---------------------------------EEEEHHHH-HHTGGGHHHH-----HHTTCCCEEEEEECSB-CCCC--
T ss_pred ---------------------------------EEEccchh-hccHHHHHHH-----HHhCCCeEEEEEeCCc-cHHHHH
Confidence 99999999 9999999999 9999999999999987 333322
Q ss_pred hhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCcchhh
Q psy14416 978 ATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKPQNFS 1057 (1065)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~ 1057 (1065)
... . ......+...+.+||.++|++||+++++|++.+||+++|+++++. ++|+||||.++++++..|+...
T Consensus 469 ~~~-~-------~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~-~gp~liev~~~~~~~~~p~~~~ 539 (549)
T 3eya_A 469 EMK-A-------GGYLTDGTELHDTNFARIAEACGITGIRVEKASEVDEALQRAFSI-DGPVLVDVVVAKEELAIPPQIK 539 (549)
T ss_dssp ------------------CCBCCCCCHHHHHHHTTSEEEEECSGGGHHHHHHHHHHS-SSCEEEEEEBCCCCSCCCCCCC
T ss_pred HHH-h-------cCCCCcCCcCCCCCHHHHHHHcCCcEEEeCCHHHHHHHHHHHHhC-CCCEEEEEEeccccccCCCCCC
Confidence 110 0 011223444577999999999999999999999999999999986 8999999999999998777666
Q ss_pred hh
Q psy14416 1058 WL 1059 (1065)
Q Consensus 1058 ~~ 1059 (1065)
|.
T Consensus 540 ~~ 541 (549)
T 3eya_A 540 LE 541 (549)
T ss_dssp --
T ss_pred HH
Confidence 54
No 4
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=100.00 E-value=8.2e-76 Score=718.80 Aligned_cols=529 Identities=21% Similarity=0.319 Sum_probs=434.5
Q ss_pred ccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc--CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccc
Q psy14416 264 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ--EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGL 341 (1065)
Q Consensus 264 ~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~--~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~ 341 (1065)
+..++++++|++.|+++||++|||+||+++++|++++.+ ++|++|.++||++|+|||+||||+||||+||++|+|||+
T Consensus 8 ~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~dal~~~~~~i~~i~~~hE~~Aa~aA~GyAr~tg~~gv~~~TsGpG~ 87 (603)
T 4feg_A 8 QTNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAGPGG 87 (603)
T ss_dssp -CEEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHTTTTSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHH
T ss_pred cCeeeHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHHHhccCCCeEEEecChHHHHHHHHHHHHHhCCceEEEecCCchH
Confidence 356899999999999999999999999999999999976 479999999999999999999999999999999999999
Q ss_pred cccccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEE
Q psy14416 342 LHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYL 421 (1065)
Q Consensus 342 ~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L 421 (1065)
+|+++||++|+.+++|||+|||++|.++++++++|++||.++|+++|||++++++++++++.+++|++.|.+ ++|||||
T Consensus 88 ~N~~~gia~A~~~~vPvl~itG~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l 166 (603)
T 4feg_A 88 THLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYA-HQGVAVV 166 (603)
T ss_dssp HTTHHHHHHHHHTTCCEEEEEEECCTTTTTSCCTTCCCCGGGGTTTCSEEEECCCSTTHHHHHHHHHHHHHH-HTSEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCcccccCCCccccccHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHhc-CCCCEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987 6799999
Q ss_pred ecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCC
Q psy14416 422 DFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKA 501 (1065)
Q Consensus 422 ~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~Akr 501 (1065)
+||.|++..+++...... +.. .......+.++.+.+++++++|++|||
T Consensus 167 ~iP~dv~~~~~~~~~~~~-~~~-------------------------------~~~~~~~~~~~~~~i~~~~~~l~~A~r 214 (603)
T 4feg_A 167 QIPVDLPWQQIPAEDWYA-SAN-------------------------------SYQTPLLPEPDVQAVTRLTQTLLAAER 214 (603)
T ss_dssp EEETTGGGSEEETTTCCC-CGG-------------------------------GCCCCCCCBCCHHHHHHHHHHHHHCSS
T ss_pred EeChhhhhccCCcccccc-ccc-------------------------------ccCCCCCCCCCHHHHHHHHHHHhcCCC
Confidence 999999988775432110 000 011123345788999999999999999
Q ss_pred cEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccc
Q psy14416 502 PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILH 574 (1065)
Q Consensus 502 PvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~ 574 (1065)
|+|++|.++ .++.++|++|+|++++||++++++||.++++||+++|. ..++++++||+||.+|+++++.
T Consensus 215 PvIl~G~g~--~~a~~~l~~lae~~~~PV~~t~~gkg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~-- 290 (603)
T 4feg_A 215 PLIYYGIGA--RKAGKELEQLSKTLKIPLMSTYPAKGIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYPFA-- 290 (603)
T ss_dssp EEEEECGGG--TTCHHHHHHHHHHHTCCEEECGGGTTSSCTTCTTBCCCCSSSSCHHHHHHHHHCSEEEEESCCCTTT--
T ss_pred eEEEECCCc--hhHHHHHHHHHHHHCCCEEEcCccccCCCCCChhhcccCcccCcHHHHHHHHhCCEEEEECCCCCcc--
Confidence 999999988 36688999999999999999999999999999999873 4567889999999999999853
Q ss_pred cCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccc
Q psy14416 575 FGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLP 654 (1065)
Q Consensus 575 ~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 654 (1065)
.++..+.++.++||||.|+.++++.+.+++.+++|++.+|++|.+.+.. .....|.+.+++..+.+++...+
T Consensus 291 -~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~ 362 (603)
T 4feg_A 291 -EVSKAFKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSE-------RESTPWWQANLANVKNWRAYLAS 362 (603)
T ss_dssp -TTTTTTTTCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHTCCC-------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -cccccCCCCCeEEEEeCCHHHhCCccCCCEEEEeCHHHHHHHHHHhhhc-------cCChHHHHHHHHHHHHHHHHhhh
Confidence 3444455678999999999999999999999999999999999988752 22357888877666666554432
Q ss_pred hhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCc
Q psy14416 655 VILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIY 734 (1065)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~ 734 (1065)
.. . ....++ + +..+++ .|.+.+|++++|+.|.|++
T Consensus 363 ~~-------------------~-------~~~~~l-----~---~~~~~~-----------~l~~~l~~~~ivv~d~G~~ 397 (603)
T 4feg_A 363 LE-------------------D-------KQEGPL-----Q---AYQVLR-----------AVNKIAEPDAIYSIDVGDI 397 (603)
T ss_dssp HH-------------------T-------CCSSBC-----C---HHHHHH-----------HHHHHCCTTCEEEECSSHH
T ss_pred hh-------------------c-------CCCCCc-----C---HHHHHH-----------HHHHhCCCCCEEEECCchH
Confidence 20 0 123456 7 778899 9999999999999999976
Q ss_pred CcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccc
Q psy14416 735 GGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIV 814 (1065)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 814 (1065)
..|..+++.. . -|.+
T Consensus 398 ~~~~~~~~~~-----~----~~~~-------------------------------------------------------- 412 (603)
T 4feg_A 398 NLNANRHLKL-----T----PSNR-------------------------------------------------------- 412 (603)
T ss_dssp HHHHHHHCCC-----C----TTCE--------------------------------------------------------
T ss_pred HHHHHHhcee-----C----CCCc--------------------------------------------------------
Confidence 6664433211 0 0000
Q ss_pred cccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccE
Q psy14416 815 ESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVI 894 (1065)
Q Consensus 815 ~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~ 894 (1065)
+-.++.+|+| |+++|.++ |++++. |++
T Consensus 413 ---------------~~~~~~~g~~----------------------------G~~l~~A~--Gaala~--------~~~ 439 (603)
T 4feg_A 413 ---------------HITSNLFATM----------------------------GVGIPGAI--AAKLNY--------PER 439 (603)
T ss_dssp ---------------EECCCSSCCT----------------------------TCHHHHHH--HHHHHC--------TTS
T ss_pred ---------------eecCcccccc----------------------------cchhHHHh--hHHHhC--------CCC
Confidence 0013345555 88888887 888888 888
Q ss_pred EEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCC
Q psy14416 895 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 974 (1065)
Q Consensus 895 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~ 974 (1065)
+|+ +++|||+| +|+.++++++ .++++|+++||+||+| |+.
T Consensus 440 ~vv---------------------------------~~~GDG~~-~~~~~~l~~a-----~~~~lp~~~vv~nN~~-~~~ 479 (603)
T 4feg_A 440 QVF---------------------------------NLAGDGGA-SMTMQDLATQ-----VQYHLPVINVVFTNCQ-YGF 479 (603)
T ss_dssp CEE---------------------------------EEEEHHHH-HHHGGGHHHH-----HHTTCCCEEEEEECSB-CHH
T ss_pred cEE---------------------------------EEeccHHH-hhhHHHHHHH-----HHHCcCeEEEEEECCc-hHH
Confidence 899 99999999 9999999999 9999999999999987 332
Q ss_pred CchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHH--hcCCCCEEEEEEeCCC
Q psy14416 975 FDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCL--QTTTRPSLINILINPS 1048 (1065)
Q Consensus 975 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~--~~~~~~~li~~~~~~~ 1048 (1065)
+... ... . +. . .......+.+||.++|++||++|++|++.+||++++++++ +. ++|+||||.+++.
T Consensus 480 ~~~~-~~~-~--~~-~--~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~~-~gP~lIev~~~~~ 547 (603)
T 4feg_A 480 IKDE-QED-T--NQ-N--DFIGVEFNDIDFSKIADGVHMQAFRVNKIEQLPDVFEQAKAIAQ-HEPVLIDAVITGD 547 (603)
T ss_dssp HHHH-HHH-H--CS-S--CCCSSBCCCCCHHHHHHHTTCEEEEECBGGGHHHHHHHHHHHTT-TSCEEEEEECCCC
T ss_pred HHHH-HHH-h--cC-C--CcccCcCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHHhcC-CCcEEEEEEeCCC
Confidence 2211 111 0 11 0 0111223678999999999999999999999999999998 65 8999999999765
No 5
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=100.00 E-value=2.6e-76 Score=720.15 Aligned_cols=539 Identities=15% Similarity=0.122 Sum_probs=400.8
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
.++.+++|++.|+++||++|||+||+++++|++++.+ ++|++|.++||++|+|||+||||+||||+||+||||||++|+
T Consensus 10 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aAdGyAr~tG~pgv~~~TsGpG~~N~ 89 (578)
T 3lq1_A 10 LTDYLAAFIEELVQAGVKEAIISPGSRSTPLALMMAEHPILKIYVDVDERSAGFFALGLAKASKRPVVLLCTSGTAAANY 89 (578)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHCCCEEEEECSSHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCceEEEecCcHHHHHHHHHHHHhhCCCEEEEECCchhhhhh
Confidence 4579999999999999999999999999999999976 479999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHH-------HHHHHHHHHhhcCCCC
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIG-------QHVEKAVRLSTFGKPG 417 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~-------~~i~~A~~~A~~~~~G 417 (1065)
++||++|+.+++|||+|||++|.+.++++++|++||.++|+++|||+++++++++++ +.+++|++.|.++|||
T Consensus 90 ~~gia~A~~d~vPll~itG~~p~~~~g~~~~Qe~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~G 169 (578)
T 3lq1_A 90 FPAVAEANLSQIPLIVLTADRPHELRNVGAPQAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRG 169 (578)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCGGGTTSSCTTCCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred hHHHHHHHhcCCCeEEEeCCCCHHhhcCCCCCCcCHhhHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCC
Confidence 999999999999999999999999999999999999999999999999999998765 4899999999999999
Q ss_pred EEEEecChhhhhhc-cccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHH
Q psy14416 418 VSYLDFPANLLAQR-INQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLI 496 (1065)
Q Consensus 418 PV~L~iP~Dv~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L 496 (1065)
||||+||.|++..+ ....... . .+|.. .+. ........++++.+++++++|
T Consensus 170 PV~l~iP~d~~~~~~~~~~~~~---~------~~~~~--------------~~~-----~~~~~~~~~~~~~i~~~~~~L 221 (578)
T 3lq1_A 170 PVHLNFPLREPLVPILEPSPFT---A------TGKKH--------------HHV-----HIYYTHEVLDDSSIQKMVTEC 221 (578)
T ss_dssp CEEEEEECCSCCCCCCSSCCC----------------------------------------CCEEEEECHHHHHHHHHHT
T ss_pred cEEEECccCCCCCCCcccchhc---c------cCccc--------------ccc-----ccccCccCCChHHHHHHHHHh
Confidence 99999999875543 1111000 0 00000 000 001112245788899999999
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCC-CCCCCCCCCcccccHH-------HHhhhcCCCEEEEeCCc
Q psy14416 497 LEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPM-GKGVVPDAHPNCVSAA-------RTHALQNADLVLLLGAR 568 (1065)
Q Consensus 497 ~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~-gkg~v~~~hpl~lg~~-------~~~al~~aDlVI~iG~~ 568 (1065)
++ |||+|++|.++.. .+.+++++|+|++|+||+++++ +++.+|++||+++|.. ....+.+||+||.+|++
T Consensus 222 ~~-~rPvIl~G~g~~~-~~~~~l~~lae~~~~PV~~t~~~~~~~~~~~hp~~~g~~~~~~~~~~~~~~~~aDlvl~~G~~ 299 (578)
T 3lq1_A 222 TG-KKGVFVVGPIDKK-ELEQPMVDLAKKLGWPILADPLSGLRSYGALDEVVIDQYDAFLKEAEIIDKLTPEVVIRFGSM 299 (578)
T ss_dssp TT-SCEEEEECSCCCT-TCHHHHHHHHHHHTCCEEECGGGSTTSBSSCCSSEECCHHHHTTSHHHHHHTCCSEEEEESSC
T ss_pred cc-CCeEEEECCCCCh-HHHHHHHHHHHhcCcEEEEecCCCCCCCCCCCccccccHHHHhcCccccccCCCCEEEEeCCc
Confidence 99 9999999999875 4568999999999999999976 5899999999998842 22346799999999998
Q ss_pred cccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhh
Q psy14416 569 LNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 648 (1065)
Q Consensus 569 ~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~ 648 (1065)
+.++.+..|.+. .++.++||||+|+..+++.+.+++.+++|++.+|++|.+.+... ....+|.++|++..+..
T Consensus 300 ~~~~~~~~~~~~-~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~------~~~~~w~~~~~~~~~~~ 372 (578)
T 3lq1_A 300 PVSKPLKNWLEQ-LSDIRFYVVDPGAAWKDPIKAVTDMIHCDERFLLDIMQQNMPDD------AKDAAWLNGWTSYNKVA 372 (578)
T ss_dssp CSCHHHHHHHHH-CCSSEEEEECTTCCCCCTTCCCSEEECSCHHHHHHHHHHHSCST------TCCHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHhc-CCCCEEEEECCCCCcCCCCcCceEEEEeCHHHHHHHHHhhccCC------CCcHHHHHHHHHHHHHH
Confidence 876555555432 25678999999999999999999999999999999999877521 11467988887665544
Q ss_pred hh-cccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEE
Q psy14416 649 RQ-VKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVI 727 (1065)
Q Consensus 649 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~il 727 (1065)
++ ...+. ....++ + +..+++ .|.+.+|++++|
T Consensus 373 ~~~~~~~~----------------------------~~~~~~-----~---~~~~~~-----------~l~~~l~~~~iv 405 (578)
T 3lq1_A 373 REIVLAEM----------------------------ANTTIL-----E---EGKIVA-----------ELRRLLPDKAGL 405 (578)
T ss_dssp HHHHHHHS----------------------------CC---------C---TTHHHH-----------HHHHHSCSEEEE
T ss_pred hHHHHHhh----------------------------hcCCCC-----C---HHHHHH-----------HHHHhCCCCCeE
Confidence 33 21111 112345 6 778899 999999999999
Q ss_pred EECCCCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCc
Q psy14416 728 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 807 (1065)
Q Consensus 728 v~d~G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 (1065)
+.++|+..+|..+++.. .+..
T Consensus 406 ~~~~~~~~~~~~~~~~~----------~~~~------------------------------------------------- 426 (578)
T 3lq1_A 406 FIGNSMPIRDVDTYFSQ----------IDKK------------------------------------------------- 426 (578)
T ss_dssp EECSSHHHHHHHHHCCC----------CSSE-------------------------------------------------
T ss_pred EEeCccHHHHHHHhhcc----------cCCC-------------------------------------------------
Confidence 99997655543322210 0000
Q ss_pred ccccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheecccc
Q psy14416 808 TTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEV 887 (1065)
Q Consensus 808 g~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ 887 (1065)
..++.|+|-.|.. .++++++ |++ .
T Consensus 427 -------------------~~~~~~~G~~G~~-----------------------------g~l~~Ai--Gaa--~---- 450 (578)
T 3lq1_A 427 -------------------IKMLANRGANGID-----------------------------GVVSSAL--GAS--V---- 450 (578)
T ss_dssp -------------------EEEECCCSSCCSS-----------------------------SHHHHHH--HHT--T----
T ss_pred -------------------ceEEeCCCccccc-----------------------------cHHHHHH--HHh--c----
Confidence 0112222211111 1223332 332 2
Q ss_pred ccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEc
Q psy14416 888 TTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVN 967 (1065)
Q Consensus 888 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~n 967 (1065)
|+++|+ +++|||+| +|+.++|+++ +++++|+++||+|
T Consensus 451 ----~~~~vv---------------------------------~i~GDGsf-~~~~~eL~ta-----~~~~l~~~ivv~N 487 (578)
T 3lq1_A 451 ----VFQPMF---------------------------------LLIGDLSF-YHDMNGLLMA-----KKYKMNLTIVIVN 487 (578)
T ss_dssp ----TSSSEE---------------------------------EEEEHHHH-HHTGGGGHHH-----HHTTCCEEEEEEC
T ss_pred ----CCCCEE---------------------------------EEEchHHH-HhhHHHHHhh-----ccCCCCeEEEEEE
Confidence 678899 99999999 9999999999 9999999999999
Q ss_pred CCc--ccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEe
Q psy14416 968 NNG--IYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILI 1045 (1065)
Q Consensus 968 n~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~ 1045 (1065)
|+| +++.+++..... .+...+.+.+++||.++|++||+++++|++.+||+++|+++++. ++|+||||.+
T Consensus 488 N~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~-~gp~liev~~ 558 (578)
T 3lq1_A 488 NDGGGIFSFLPQANEPK--------YFESLFGTSTELDFRFAAAFYDADYHEAKSVDELEEAIDKASYH-KGLDIIEVKT 558 (578)
T ss_dssp CC---------------------------------CCCTHHHHHHTTCEEEECCSHHHHHHHHHHHTTS-SSEEEEEEC-
T ss_pred CCcCccccccccccccc--------hhhhhccCCCCCCHHHHHHHcCCceEecCCHHHHHHHHHHHHhC-CCCEEEEEEC
Confidence 987 333222211000 01112334467999999999999999999999999999999986 8999999999
Q ss_pred CCCCCCCcch
Q psy14416 1046 NPSADRKPQN 1055 (1065)
Q Consensus 1046 ~~~~~~~~~~ 1055 (1065)
+++++..+++
T Consensus 559 ~~~~~~~~~~ 568 (578)
T 3lq1_A 559 NRHENKANHQ 568 (578)
T ss_dssp ----------
T ss_pred CccccHHHHH
Confidence 9999887754
No 6
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=100.00 E-value=5.8e-75 Score=706.57 Aligned_cols=527 Identities=19% Similarity=0.249 Sum_probs=423.8
Q ss_pred ccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccccc
Q psy14416 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 346 (1065)
Q Consensus 267 ~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~ 346 (1065)
++++++|++.|+++||+++||+||+++++|++++.+++|++|.++||++|+|||+||||+||||+||++|||||++|+++
T Consensus 11 ~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~v~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~ 90 (566)
T 1ozh_A 11 AHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANAAFMAAAVGRITGKAGVALVTSGPGCSNLIT 90 (566)
T ss_dssp SCHHHHHHHHHHHHTCCEEEEECCTTTHHHHHHGGGSSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTHH
T ss_pred CcHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHHHCCCEEEEEccChHHHHHHH
Confidence 68999999999999999999999999999999997778999999999999999999999999999999999999999999
Q ss_pred ccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 347 GMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 347 av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
||++|+.+++|||+|||++|.++++++++|++||.++|+++|||++++++++++++.+++|++.|.++|||||||+||.|
T Consensus 91 ~l~~A~~~~vPll~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 91 GMATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQD 170 (566)
T ss_dssp HHHHHHHHTCCEEEEEEECCTTTC------CCCHHHHHGGGCSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHhcCCCEEEEeCCCccccCCCCcccccCHHHHHHHHhheEEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEEEE
Q psy14416 427 LLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVII 506 (1065)
Q Consensus 427 v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvIlv 506 (1065)
++.++.+..... .. .......++.+.+++++++|++||||+|++
T Consensus 171 v~~~~~~~~~~~---~~---------------------------------~~~~~~~~~~~~i~~~~~~l~~a~rpvil~ 214 (566)
T 1ozh_A 171 VVDGPVSGKVLP---AS---------------------------------GAPQMGAAPDDAIDQVAKLIAQAKNPIFLL 214 (566)
T ss_dssp HHHSCEEECCCC---CC---------------------------------CSCEECCSCHHHHHHHHHHHHHCSSEEEEE
T ss_pred hhhccccccccc---cc---------------------------------cccCCCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 987765422110 00 001112467788999999999999999999
Q ss_pred ccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCc-ccccH-------HHHhhhcCCCEEEEeCCccccccccCCC
Q psy14416 507 GKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHP-NCVSA-------ARTHALQNADLVLLLGARLNWILHFGRA 578 (1065)
Q Consensus 507 G~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hp-l~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g~~ 578 (1065)
|.++..+++.+++++|+|++|+||++++++|+.++++|| +++|. ..++++++||+||.+|+.+.++....|.
T Consensus 215 G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~~~~~~p~~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~ 294 (566)
T 1ozh_A 215 GLMASQPENSKALRRLLETSHIPVTSTYQAAGAVNQDNFSRFAGRVGLFNNQAGDRLLQLADLVICIGYSPVEYEPAMWN 294 (566)
T ss_dssp CGGGGSGGGHHHHHHHHHHHCCCEEECGGGTTTCCTTTCTTEEEECSSBTTCHHHHHHHHCSEEEEESCCGGGSCGGGTC
T ss_pred CCCcccccHHHHHHHHHHHHCCCEEEccccCCcCCCCChHhhcCCCcccCCHHHHHHHHhCCEEEEECCCCCcCCccccC
Confidence 999988888899999999999999999999999999999 88762 3466788999999999976554444443
Q ss_pred ccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhh
Q psy14416 579 PRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILV 658 (1065)
Q Consensus 579 ~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~ 658 (1065)
.++.++||||.|+.++++++.+++.+++|++.+|++|.+.++.. .....|.+++++..+.......+.
T Consensus 295 ---~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~------~~~~~w~~~~~~~~~~~~~~~~~~--- 362 (566)
T 1ozh_A 295 ---SGNATLVHIDVLPAYEERNYTPDVELVGDIAGTLNKLAQNIDHR------LVLSPQAAEILRDRQHQRELLDRR--- 362 (566)
T ss_dssp ---CSCSEEEEEESSCCCCBTTBCCSEEEESCHHHHHHHHHHTCCSC------CCCCHHHHHHHHHHHHHHHHHHC----
T ss_pred ---CCCCcEEEEeCCHHHhCCCCCCCEEEEeCHHHHHHHHHHhcccc------CCcHHHHHHHHHHHHHhHhhhhhc---
Confidence 23678999999999999999999999999999999998877521 123568887776554433221110
Q ss_pred hhccCCccCCCCccccccccccCccccccc-eEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCcc
Q psy14416 659 IVNNNGIYGGFDETTYASIVESGEVTTVLP-VILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 737 (1065)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-l~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~ 737 (1065)
.. ....| + + +..+++ .|.+.+|++.+++.|+|.+..|
T Consensus 363 ----------------~~-------~~~~~~l-----~---~~~v~~-----------~l~~~l~~~~iv~~d~G~~~~~ 400 (566)
T 1ozh_A 363 ----------------GA-------QLNQFAL-----H---PLRIVR-----------AMQDIVNSDVTLTVDMGSFHIW 400 (566)
T ss_dssp ----------------CC-------CCCCSSB-----C---HHHHHH-----------HHHHHCCTTEEEEECSSHHHHH
T ss_pred ----------------cc-------cCCCCCc-----C---HHHHHH-----------HHHHhCCCCCEEEEcCcHHHHH
Confidence 00 01224 5 6 778888 9999999999999999976556
Q ss_pred cccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccccc
Q psy14416 738 DETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESG 817 (1065)
Q Consensus 738 ~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 817 (1065)
..+++.. . -|.+ +
T Consensus 401 ~~~~~~~-----~----~~~~---------------------------------------------~------------- 413 (566)
T 1ozh_A 401 IARYLYT-----F----RARQ---------------------------------------------V------------- 413 (566)
T ss_dssp HHHTGGG-----C----CCSE---------------------------------------------E-------------
T ss_pred HHHhccc-----C----CCCe---------------------------------------------E-------------
Confidence 4433221 0 0000 0
Q ss_pred ceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEE
Q psy14416 818 EVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVI 897 (1065)
Q Consensus 818 ~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~ 897 (1065)
+. ++-+|+| |+++++++ |++++. |+++|+
T Consensus 414 ------------~~-~~g~g~m----------------------------G~~l~~Ai--Gaala~--------~~~~vv 442 (566)
T 1ozh_A 414 ------------MI-SNGQQTM----------------------------GVALPWAI--GAWLVN--------PERKVV 442 (566)
T ss_dssp ------------EC-CCTTCCT----------------------------TCHHHHHH--HHHHHS--------TTSEEE
T ss_pred ------------Ee-CCCcccc----------------------------cchHHHHH--HHHHhC--------CCCCEE
Confidence 00 1113444 88888877 888887 889999
Q ss_pred EccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCch
Q psy14416 898 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 977 (1065)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~ 977 (1065)
+++|||+| +|+.++++++ .++++|+++||+||+| |+.+..
T Consensus 443 ---------------------------------~i~GDG~~-~~~~~~L~ta-----~~~~l~~~ivv~nN~~-~~~~~~ 482 (566)
T 1ozh_A 443 ---------------------------------SVSGDGGF-LQSSMELETA-----VRLKANVLHLIWVDNG-YNMVAI 482 (566)
T ss_dssp ---------------------------------EEEEHHHH-HHHTTHHHHH-----HHHTCCEEEEEEECSB-CHHHHH
T ss_pred ---------------------------------EEEcChHH-hccHHHHHHH-----HHhCCCcEEEEEECCc-hhHHHH
Confidence 99999999 9999999999 9999999999999987 222211
Q ss_pred hhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q psy14416 978 ATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSAD 1050 (1065)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 1050 (1065)
. ........+ ....+++||.++|++||+++++|++.+||+++++++++. ++|+||||.++++++
T Consensus 483 ~--~~~~~~~~~------~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~-~gp~liev~~~~~~~ 546 (566)
T 1ozh_A 483 Q--EEKKYQRLS------GVEFGPMDFKAYAESFGAKGFAVESAEALEPTLRAAMDV-DGPAVVAIPVDYRDN 546 (566)
T ss_dssp H--HHHHHSSCC------SCBCCCCCHHHHHHTTTSEEEECCSGGGHHHHHHHHHHS-SSCEEEEEEBCCTTH
T ss_pred H--HHHhcCCCc------cCcCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhC-CCCEEEEEEeCCCcC
Confidence 1 111111111 123456899999999999999999999999999999986 899999999998876
No 7
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=100.00 E-value=4.3e-75 Score=711.22 Aligned_cols=542 Identities=23% Similarity=0.318 Sum_probs=430.9
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
.++++++|++.|+++||+++||+||+++++|++++.+ .+|++|.++||++|+|||+||||+||||+||+||||||++|+
T Consensus 11 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~ 90 (590)
T 1ybh_A 11 PRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATNL 90 (590)
T ss_dssp CEEHHHHHHHHHHTTTCCEEEECCCGGGHHHHHHHHHCSSCEECCCSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTT
T ss_pred CccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhccCCccEEeeCCHHHHHHHHHHHHHHHCCCEEEEeccCchHHHH
Confidence 4789999999999999999999999999999999976 469999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecC
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP 424 (1065)
++||++|+.+++|||+|||++|.++++++++|++||.++|+++|||++++++++++++.+++|++.|.++|||||||+||
T Consensus 91 ~~gv~~A~~~~vPll~itg~~~~~~~g~~~~Q~~d~~~~~~~~~k~~~~v~~~~~i~~~l~~A~~~a~~~~~GPV~l~iP 170 (590)
T 1ybh_A 91 VSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVP 170 (590)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSEEEECCCGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred HHHHHHHHhhCCCEEEEeCcCCccccCCCcccccCHHHHHHHHhCeEEecCCHHHHHHHHHHHHHHHhhCCCceEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEE
Q psy14416 425 ANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLV 504 (1065)
Q Consensus 425 ~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvI 504 (1065)
.|++..+.+... + .+.. .+ . ..+...+.++.+.+++++++|++||||+|
T Consensus 171 ~dv~~~~~~~~~-~-~~~~------~~--------------~---------~~~~~~~~~~~~~i~~~~~~l~~a~rpvI 219 (590)
T 1ybh_A 171 KDIQQQLAIPNW-E-QAMR------LP--------------G---------YMSRMPKPPEDSHLEQIVRLISESKKPVL 219 (590)
T ss_dssp HHHHHCEECCCT-T-CCCC------CH--------------H---------HHHHSCCCCCHHHHHHHHHHHHHCSSEEE
T ss_pred cchhhhhccccc-c-cccc------cc--------------c---------CCCCCCCCCCHHHHHHHHHHHHhCCCcEE
Confidence 999877653210 0 0000 00 0 00011223578899999999999999999
Q ss_pred EEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccCC
Q psy14416 505 IIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFGR 577 (1065)
Q Consensus 505 lvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g~ 577 (1065)
++|.++..+. +++++|+|++|+||++++++||.+|++||+++|. ..+.++++||+||.+|+++++..+ ++
T Consensus 220 l~G~g~~~~~--~~l~~lae~~~~Pv~~t~~g~g~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~-~~ 296 (590)
T 1ybh_A 220 YVGGGCLNSS--DELGRFVELTGIPVASTLMGLGSYPADDELSLHMLGMHGTVYANYAVEHSDLLLAFGVRFDDRVT-GK 296 (590)
T ss_dssp EECGGGTTCH--HHHHHHHHHHCCCEEECTTTTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSEEEEESCCCCHHHH-SS
T ss_pred EECcccccCH--HHHHHHHHHhCCCEEEchhhcCcCCCCCchhcCCcccccCHHHHHHHHhCCEEEEEcCCCCcccc-Cc
Confidence 9999987665 8999999999999999999999999999998872 456778899999999999977544 44
Q ss_pred CccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhh
Q psy14416 578 APRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVIL 657 (1065)
Q Consensus 578 ~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ 657 (1065)
+..+.++.++||||.|+.++++++..++.+++|+..+|++|.+.+....... ......|.+++++..++......
T Consensus 297 ~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---- 371 (590)
T 1ybh_A 297 LEAFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLENRAEEL-KLDFGVWRNELNVQKQKFPLSFK---- 371 (590)
T ss_dssp GGGTTTTSEEEEEESCTTTTTSSSCCSEEEESCHHHHHHHHHHHHHHTHHHH-CCCCHHHHHHHHHHHHHSCCCCC----
T ss_pred ccccCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhhcccccc-ccchHHHHHHHHHHHHhhhhhcc----
Confidence 4455567899999999999999999999999999999999988775211000 01235677665544332211100
Q ss_pred hhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCcc
Q psy14416 658 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 737 (1065)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~ 737 (1065)
....++ + +..+++ .|.+.+|++++++.|.|++..|
T Consensus 372 --------------------------~~~~~l-----~---~~~~~~-----------~l~~~lp~~~ivv~d~G~~~~~ 406 (590)
T 1ybh_A 372 --------------------------TFGEAI-----P---PQYAIK-----------VLDELTDGKAIISTGVGQHQMW 406 (590)
T ss_dssp --------------------------CCTTBC-----C---HHHHHH-----------HHHHHTTTCCEEEECSSHHHHH
T ss_pred --------------------------cccCCc-----C---HHHHHH-----------HHHHhCCCCCEEEEcCcHHHHH
Confidence 011235 6 778888 9999999999999999875545
Q ss_pred cccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccccc
Q psy14416 738 DETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESG 817 (1065)
Q Consensus 738 ~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 817 (1065)
..+++.. ..| +.+++
T Consensus 407 ~~~~~~~-----------------------------------------------~~~-------~~~~~----------- 421 (590)
T 1ybh_A 407 AAQFYNY-----------------------------------------------KKP-------RQWLS----------- 421 (590)
T ss_dssp HHHSCCC-----------------------------------------------SST-------TSEEC-----------
T ss_pred HHHhccc-----------------------------------------------CCC-------CeEEe-----------
Confidence 3322110 000 12222
Q ss_pred ceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEE
Q psy14416 818 EVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVI 897 (1065)
Q Consensus 818 ~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~ 897 (1065)
+|.+|+| |+++++++ |++++. |+++|+
T Consensus 422 ---------------~g~~G~~----------------------------G~~l~~Ai--Gaala~--------~~~~vv 448 (590)
T 1ybh_A 422 ---------------SGGLGAM----------------------------GFGLPAAI--GASVAN--------PDAIVV 448 (590)
T ss_dssp ---------------CCSSCCT----------------------------TCHHHHHH--HHHHHC--------TTSCEE
T ss_pred ---------------CCCcccc----------------------------cchHHHHH--HHHHhC--------CCCcEE
Confidence 3335666 88888888 888888 888999
Q ss_pred EccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCch
Q psy14416 898 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 977 (1065)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~ 977 (1065)
+++|||+| +|+.++++++ +++++|+++||+||+| |+....
T Consensus 449 ---------------------------------~i~GDGs~-~~~~~~L~ta-----~~~~l~~~ivv~NN~~-~~~~~~ 488 (590)
T 1ybh_A 449 ---------------------------------DIDGDGSF-IMNVQELATI-----RVENLPVKVLLLNNQH-LGMVMQ 488 (590)
T ss_dssp ---------------------------------EEEEHHHH-HHTTTHHHHH-----HHTTCCEEEEEEECSB-CHHHHH
T ss_pred ---------------------------------EEEccchh-hccHHHHHHH-----HHhCCCcEEEEEECCc-chHHHH
Confidence 99999999 9999999999 9999999999999988 332221
Q ss_pred hhHhHHhhcCCc-cc-C-CCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 978 ATYASIVESGEV-TT-V-SPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 978 ~~~~~~~~~~~~-~~-~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
. ......+.. .. . .|..+..+.+||.++|++||+++++|++.+||+++++++++. ++|+||||.+++.++..
T Consensus 489 ~--~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~-~gp~liev~~~~~~~~~ 563 (590)
T 1ybh_A 489 W--EDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVTKKADLREAIQTMLDT-PGPYLLDVICPHQEHVL 563 (590)
T ss_dssp H--HHHHSTTCCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEECBHHHHHHHHHHHHHS-SSCEEEEEECCTTCCCC
T ss_pred H--HHHhcCCccccccccccccccCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhC-CCCEEEEEEecCCcccC
Confidence 1 111111111 00 0 011111236899999999999999999999999999999987 89999999999988653
No 8
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=100.00 E-value=7.7e-75 Score=715.84 Aligned_cols=541 Identities=20% Similarity=0.295 Sum_probs=427.9
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
..++++++|++.|+++||++|||+||+++++|++++.+ .+|++|.++||++|+|||+||||+||||+||+||||||++|
T Consensus 80 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~pl~dal~~~~~i~~v~~~hE~~Aa~aAdGyAr~tGkpgvv~~TsGpG~~N 159 (677)
T 1t9b_A 80 VGLTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATN 159 (677)
T ss_dssp TTCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHTTTCSSSEEECCSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHT
T ss_pred cCCCHHHHHHHHHHHcCCCEEEEecCccHHHHHHHHHhCCCCeEEEeCChHHHHHHHHHHHHHHCCCEEEEECCChHHHH
Confidence 46799999999999999999999999999999999976 46999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
+++||++|+.+++|||+|||++|.++++++++|++||.++|+++|||++++++++++++.+++|++.|.++|||||||+|
T Consensus 160 ~~~gia~A~~d~vPllvItG~~~~~~~g~~a~Q~~Dq~~i~~~~tk~~~~v~~~~~i~~~i~~A~~~A~~grpGPV~l~l 239 (677)
T 1t9b_A 160 VVTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDL 239 (677)
T ss_dssp THHHHHHHHHHTCCEEEEEEECCTTTTTSCCTTCCCHHHHTGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCCChhhcCCCCccccCHHHHhhhheeEEEEcCCHHHHHHHHHHHHHHHhhCCCceEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++..++..+... .... +..+++ .........++.+.+++++++|++||||+
T Consensus 240 P~Dv~~~~~~~p~~~-~~~~--~~~~~~-----------------------~~~~~~~~~~~~~~i~~a~~~L~~AkrPv 293 (677)
T 1t9b_A 240 PKDVTAAILRNPIPT-KTTL--PSNALN-----------------------QLTSRAQDEFVMQSINKAADLINLAKKPV 293 (677)
T ss_dssp EHHHHHSBCCSCBC----------------------------------------------CHHHHHHHHHHHHHTCSSEE
T ss_pred CHHHhhhhccccccc-cccc--cccccc-----------------------CCCccccccCCHHHHHHHHHHHHhCCCeE
Confidence 999987765421100 0000 000000 00000111234678999999999999999
Q ss_pred EEEccCCCch-hHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCcccccccc
Q psy14416 504 VIIGKGAAYS-QAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHF 575 (1065)
Q Consensus 504 IlvG~g~~~~-~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~ 575 (1065)
|++|.++..+ .+.++|++|||++|+||+++.++||.++++||+++|. ..+.++++||+||.+|+++++..+.
T Consensus 294 Il~G~g~~~~~~~~~~l~~lae~~~~PV~tt~~gkg~~~~~hpl~lG~~G~~g~~~~~~~l~~aDlvl~iG~r~~~~~t~ 373 (677)
T 1t9b_A 294 LYVGAGILNHADGPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKSLDMLGMHGCATANLAVQNADLIIAVGARFDDRVTG 373 (677)
T ss_dssp EEECGGGGGSTTHHHHHHHHHHHTTCCEEECGGGTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSEEEEESCCCCTTTSC
T ss_pred EEECcccccCchhHHHHHHHHHHhCCCeeeccccCccCCCCCccccCcCCccCcHHHHHHHhcCCEEEEECCccCccccc
Confidence 9999998655 4678999999999999999999999999999997662 4566788999999999999875543
Q ss_pred CCCccccCCCe---------EEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHH
Q psy14416 576 GRAPRFKSNVK---------IIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQ 646 (1065)
Q Consensus 576 g~~~~~~~~~~---------iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~ 646 (1065)
....|.++.+ +||||.|+..+++.+..++.+++|+..+|++|.+.+.. ...+..|.+.+++.++
T Consensus 374 -~~~~~~~~~~~~~~~~~~~iI~idid~~~~~~~~~~~~~i~gD~~~~l~~L~~~l~~------~~~~~~w~~~~~~~~~ 446 (677)
T 1t9b_A 374 -NISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDATTNLGKMMSKIFP------VKERSEWFAQINKWKK 446 (677)
T ss_dssp -SGGGSSHHHHHHHHTTSCEEEEEESCGGGSSSSSCCSEEEESCHHHHHHHHHTTSCC------CCCCHHHHHHHHHHHH
T ss_pred -CccccCcccccccccCCceEEEEECCHHHhCCcccCCEEEeCCHHHHHHHHHHHhhc------cccchHHHHHHHHHHH
Confidence 3333444445 99999999999999999999999999999999888752 1234678887776544
Q ss_pred hhhhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcC---CC
Q psy14416 647 TNRQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVL---PV 723 (1065)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~L---P~ 723 (1065)
......... ....++ + +..+++ .|.+.+ |+
T Consensus 447 ~~~~~~~~~----------------------------~~~~~l-----~---~~~v~~-----------~L~~~l~~~~~ 479 (677)
T 1t9b_A 447 EYPYAYMEE----------------------------TPGSKI-----K---PQTVIK-----------KLSKVANDTGR 479 (677)
T ss_dssp HSCCCCCCC----------------------------CTTCCB-----C---HHHHHH-----------HHHHHHHTTCS
T ss_pred hcccccccc----------------------------cCCCCc-----C---HHHHHH-----------HHHHHhhcCCC
Confidence 332111000 012245 6 777888 898888 77
Q ss_pred cEEEEECCCCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCccc
Q psy14416 724 ILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG 803 (1065)
Q Consensus 724 d~ilv~d~G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 803 (1065)
+.++..|.|++..|..+++.. ..| +.
T Consensus 480 ~~iv~~~vg~~~~~~~~~~~~-----------------------------------------------~~p-------~~ 505 (677)
T 1t9b_A 480 HVIVTTGVGQHQMWAAQHWTW-----------------------------------------------RNP-------HT 505 (677)
T ss_dssp CEEEEECSSHHHHHHHHHSCC-----------------------------------------------CST-------TC
T ss_pred CEEEEeCCchHHHHHHHhccc-----------------------------------------------CCC-------Ce
Confidence 888888887655554322210 000 01
Q ss_pred ccCcccccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhhee
Q psy14416 804 GFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVE 883 (1065)
Q Consensus 804 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ 883 (1065)
++ ++|.+|+| |+++++++ |++++.
T Consensus 506 ~~--------------------------~sg~~G~m----------------------------G~~lpaAi--GaalA~ 529 (677)
T 1t9b_A 506 FI--------------------------TSGGLGTM----------------------------GYGLPAAI--GAQVAK 529 (677)
T ss_dssp EE--------------------------CCCSSCCT----------------------------TCHHHHHH--HHHHHC
T ss_pred EE--------------------------eCCCcchh----------------------------hchHHHHH--HHHHhC
Confidence 11 24556777 88888888 999988
Q ss_pred ccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEE
Q psy14416 884 SGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVIL 963 (1065)
Q Consensus 884 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 963 (1065)
|+++|| +++|||+| +|+.++|+++ +++++|++|
T Consensus 530 --------p~~~Vv---------------------------------~i~GDGsf-~~~~~eL~ta-----~~~~l~v~i 562 (677)
T 1t9b_A 530 --------PESLVI---------------------------------DIDGDASF-NMTLTELSSA-----VQAGTPVKI 562 (677)
T ss_dssp --------TTSEEE---------------------------------EEEEHHHH-HHHGGGHHHH-----HHHTCCCEE
T ss_pred --------CCCeEE---------------------------------EEEeehHH-hccHHHHHHH-----HHhCCCeEE
Confidence 899999 99999999 9999999999 999999999
Q ss_pred EEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEE
Q psy14416 964 VIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINI 1043 (1065)
Q Consensus 964 ~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~ 1043 (1065)
||+||+| |+.+... ........+ . ....+++||.++|++||+++++|++.+||+++|+++++. ++|+||||
T Consensus 563 vV~NN~~-~g~~~~~--~~~~~~~~~---~--~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~-~gp~lIev 633 (677)
T 1t9b_A 563 LILNNEE-QGMVTQW--QSLFYEHRY---S--HTHQLNPDFIKLAEAMGLKGLRVKKQEELDAKLKEFVST-KGPVLLEV 633 (677)
T ss_dssp EEEECSS-CHHHHHH--HHHHSTTCC---C--SCCCCCCCHHHHHHHTTCEEEEECSHHHHHHHHHHHHHC-SSCEEEEE
T ss_pred EEEeCCC-chhhhhh--hhhhcCCCc---c--cCcCCCCCHHHHHHHcCCeEEEECCHHHHHHHHHHHHHC-CCcEEEEE
Confidence 9999988 3322111 111111111 0 112356899999999999999999999999999999986 89999999
Q ss_pred EeCCCCCC
Q psy14416 1044 LINPSADR 1051 (1065)
Q Consensus 1044 ~~~~~~~~ 1051 (1065)
.+++.++.
T Consensus 634 ~~~~~~~~ 641 (677)
T 1t9b_A 634 EVDKKVPV 641 (677)
T ss_dssp EBCSSCCC
T ss_pred EecCCccc
Confidence 99988764
No 9
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=100.00 E-value=1.4e-74 Score=706.28 Aligned_cols=541 Identities=20% Similarity=0.240 Sum_probs=432.3
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc--CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ--EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 342 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~--~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~ 342 (1065)
..++++++|++.|+++||+++||+||+++++|++++.+ .+|++|.++||++|+|||+||||+||||+||+||+|||++
T Consensus 2 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~i~~v~~~hE~~Aa~~A~GyAr~tg~p~v~~~TsGpG~~ 81 (589)
T 2pgn_A 2 AIKRGADLIVEALEEYGTEQVVGFIGHTSHFVADAFSKSHLGKRVINPATELGGAWMVNGYNYVKDRSAAVGAWHCVGNL 81 (589)
T ss_dssp CEEEHHHHHHHHHHHTTCCEEEEECSGGGHHHHHHHHTSTTSTTCBCCSSHHHHHHHHHHHHHHHTSCCEEEEEEGGGGG
T ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHHCCCEEEEEecCchHH
Confidence 35789999999999999999999999999999999976 4699999999999999999999999999999999999999
Q ss_pred ccccccccccccCcceEeecCCCccCCCCCC-CCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEE
Q psy14416 343 HTFGGMANAQINCWPMLVIGGSCAQDHEGIG-GFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYL 421 (1065)
Q Consensus 343 N~~~av~eA~~~~vPLlvItg~~p~~~~g~g-a~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L 421 (1065)
|+++||++|+.+++|||+|||++|.++++++ ++|++||.+ |+++|||++++++++++++.+++|++.|.++|||||||
T Consensus 82 N~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~Q~~d~~~-~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l 160 (589)
T 2pgn_A 82 LLHAAMQEARTGRIPAVHIGLNSDGRLAGRSEAAQQVPWQS-FTPIARSTQRVERLDKVGEAIHEAFRVAEGHPAGPAYV 160 (589)
T ss_dssp GCHHHHHHHHHTTCCEEEEEEESCGGGTTCTTCSSCCCGGG-GTTTSSEEEECCSGGGHHHHHHHHHHHHTSSSCCEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEecCCcccccCCCCcccccChhh-ccccEEEEeecCCHHHHHHHHHHHHHHHhcCCCccEEE
Confidence 9999999999999999999999999999999 999999999 99999999999999999999999999999999999999
Q ss_pred ecChhhhhhccccc-cCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCC
Q psy14416 422 DFPANLLAQRINQS-ALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAK 500 (1065)
Q Consensus 422 ~iP~Dv~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~Ak 500 (1065)
+||.|++.++.+.. ... .+. | ..+.....++ +.+++++++|+++|
T Consensus 161 ~iP~dv~~~~~~~~~~~~-~~~-------~-------------------------~~~~~~~~~~-~~v~~~~~~l~~a~ 206 (589)
T 2pgn_A 161 DIPFDLTADQIDDKALVP-RGA-------T-------------------------RAKSVLHAPN-EDVREAAAQLVAAK 206 (589)
T ss_dssp EEETHHHHCEEECTTTSC-CCC-------C-------------------------CCCCCCCCCH-HHHHHHHHHHHHCS
T ss_pred EeCHhhhhcccccccccc-ccc-------c-------------------------cCCccCCChH-HHHHHHHHHHHhCC
Confidence 99999987655421 110 000 0 0000002234 78999999999999
Q ss_pred CcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCcccccc
Q psy14416 501 APLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWIL 573 (1065)
Q Consensus 501 rPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~ 573 (1065)
||+|++|.++.++++.+++++|+|++|+||++++++|+.++++||+++|. ..++++++||+||.+|+++.++.
T Consensus 207 rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~~p~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~ 286 (589)
T 2pgn_A 207 NPVILAGGGVARSGGSEALLKLAEMVGVPVVTTSTGAGVFPETHALAMGSAGFCGWKSANDMMAAADFVLVLGSRLSDWG 286 (589)
T ss_dssp SEEEEECHHHHHHTCHHHHHHHHHHHTCCEEECTTTTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSEEEEESCCCCTTT
T ss_pred CeEEEECCCcccccHHHHHHHHHHHhCCCEEEccccCccCCCCChhhcCCccccCCHHHHHHHhhCCEEEEECCCccccc
Confidence 99999999887777789999999999999999999999999999998872 35677889999999999998876
Q ss_pred ccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhccccc-C-CCCCCCchHH--HHHHH-HHHhh
Q psy14416 574 HFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQR-N-WSFSATSPWW--QELKL-KCQTN 648 (1065)
Q Consensus 574 ~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~-~-~~~~~~~~W~--~~~~~-~~~~~ 648 (1065)
+. | ..+.++.++||||.|+.++++++.+++.+++|+..+|++|.+.++.... . ........|. +.+++ ..+ .
T Consensus 287 ~~-~-~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-~ 363 (589)
T 2pgn_A 287 IA-Q-GYITKMPKFVHVDTDPAVLGTFYFPLLSVVADAKTFMEQLIEVLPGTSGFKAVRYQERENFRQATEFRAAWDG-W 363 (589)
T ss_dssp TT-T-TTTCCCCSEEEEESCGGGTTSSSCCSEEEECCHHHHHHHHHHHGGGSTTCCCCCGGGSTTHHHHHHHHHHHHH-H
T ss_pred cc-c-cccCCCCeEEEEeCCHHHHCCCcCCCEEEEeCHHHHHHHHHHHhhhcccccccccccchhhccHHHHHHHHHH-H
Confidence 55 4 3455677899999999999999999999999999999999887752100 0 0001234687 66554 322 1
Q ss_pred hhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEE
Q psy14416 649 RQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 728 (1065)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv 728 (1065)
.+... . ....++ + +..+++ .|.+.+|++++++
T Consensus 364 ~~~~~-~----------------------------~~~~~l-----~---~~~~~~-----------~l~~~l~~~~iv~ 395 (589)
T 2pgn_A 364 VREQE-S----------------------------GDGMPA-----S---MFRAMA-----------EVRKVQRPEDIIV 395 (589)
T ss_dssp HHHHT-C----------------------------CCCSSC-----C---HHHHHH-----------HHHHTCCTTCEEE
T ss_pred Hhhhc-c----------------------------CCCCCc-----C---HHHHHH-----------HHHHhCCCCCEEE
Confidence 10000 0 012245 6 778888 9999999999999
Q ss_pred ECCCCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcc
Q psy14416 729 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDET 808 (1065)
Q Consensus 729 ~d~G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 808 (1065)
.|+|.+..|..+++.. ..| +.
T Consensus 396 ~d~g~~~~~~~~~~~~-----------------------------------------------~~~-------~~----- 416 (589)
T 2pgn_A 396 TDIGNHTLPMFGGAIL-----------------------------------------------QRP-------RR----- 416 (589)
T ss_dssp ECSSTTHHHHHHHCCC-----------------------------------------------SST-------TC-----
T ss_pred EcCchHHHHHHHhccc-----------------------------------------------CCC-------Cc-----
Confidence 9999876665433221 000 00
Q ss_pred cccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccc
Q psy14416 809 TYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVT 888 (1065)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~ 888 (1065)
++.| +-+|+| |+++++++ |++++.
T Consensus 417 --------------------~~~~-~g~g~m----------------------------G~~l~~Ai--Gaala~----- 440 (589)
T 2pgn_A 417 --------------------LVTS-MAEGIL----------------------------GCGFPMAL--GAQLAE----- 440 (589)
T ss_dssp --------------------EESC-TTTCCT----------------------------TCHHHHHH--HHHHHC-----
T ss_pred --------------------EECC-CCcchh----------------------------hhHHHHHH--HHHHhC-----
Confidence 1111 113455 88888877 888888
Q ss_pred cccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcC
Q psy14416 889 TVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNN 968 (1065)
Q Consensus 889 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn 968 (1065)
|+++|+ +++|||+| +|+.++++++ +++++|+++||+||
T Consensus 441 ---~~~~vv---------------------------------~i~GDG~~-~~~~~~L~ta-----~~~~l~~~ivv~nN 478 (589)
T 2pgn_A 441 ---PNSRVF---------------------------------LGTGDGAL-YYHFNEFRVA-----VEHKLPVITMVFTN 478 (589)
T ss_dssp ---TTSCEE---------------------------------EEEEHHHH-HHHGGGHHHH-----HHTTCCCEEEEEEC
T ss_pred ---CCCcEE---------------------------------EEEeeHHH-HhhHHHHHHH-----HHhCCCeEEEEEEC
Confidence 888999 99999999 9999999999 99999999999999
Q ss_pred CcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCC
Q psy14416 969 NGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPS 1048 (1065)
Q Consensus 969 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~ 1048 (1065)
+| |+.+... ......... . .. ..++||.++|++||+++++|++.+||+++|+++++. ++|+||||.+++.
T Consensus 479 ~~-~~~~~~~--~~~~~~~~~---~--~~-~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~-~gp~liev~~~~~ 548 (589)
T 2pgn_A 479 ES-YGANWTL--MNHQFGQNN---W--TE-FMNPDWVGIAKAFGAYGESVRETGDIAGALQRAIDS-GKPALIEIPVSKT 548 (589)
T ss_dssp SB-CHHHHHH--HHHHHSSCC---S--CB-CCCCCHHHHHHHHTCEEEECTTTCCHHHHHHHHHHH-CSCEEEEEECCSS
T ss_pred CC-cccchHH--HHhhcCCCc---c--cc-CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhC-CCCEEEEEEecCC
Confidence 87 3322211 111111111 1 11 236899999999999999999999999999999986 8999999999999
Q ss_pred CCCCcchhhh
Q psy14416 1049 ADRKPQNFSW 1058 (1065)
Q Consensus 1049 ~~~~~~~~~~ 1058 (1065)
++..+....|
T Consensus 549 ~~~~~~~~g~ 558 (589)
T 2pgn_A 549 QGLASDPVGG 558 (589)
T ss_dssp SSTTTCCSSC
T ss_pred CCcCccCCCc
Confidence 9887754443
No 10
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=100.00 E-value=5.2e-74 Score=698.16 Aligned_cols=540 Identities=24% Similarity=0.343 Sum_probs=428.6
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
..++++++|++.|+++||+++||+||+++++|++++.+++|++|.++||++|+|||+||||+||||+||+||||||++|+
T Consensus 2 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~ 81 (563)
T 2uz1_A 2 AMITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYARAGAKLGVALVTAGGGFTNA 81 (563)
T ss_dssp CEEEHHHHHHHHHHHHTCCCEEECCCGGGHHHHHHHHHHTCCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTTHHHHTT
T ss_pred CccCHHHHHHHHHHHCCCCEEEECCCCchHHHHHHHHhcCCcEEeeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHHH
Confidence 45789999999999999999999999999999999976679999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCCCCc-cChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE-CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~-idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
++||++|+.+++|||+|||++|.++++++++|+ +||.++|+++|||++++++++++++.+++|++.|.++|||||||+|
T Consensus 82 ~~~l~~A~~~~~Pll~itg~~~~~~~~~~~~Q~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~i 161 (563)
T 2uz1_A 82 VTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAAPITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDL 161 (563)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCGGGTTSCCTTCCCCHHHHHGGGCSEEEECCCGGGHHHHHHHHHHHHHSSSCCCEEEEE
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcccCCchhhhhhccHHHHhhhhhceEEEcCCHHHHHHHHHHHHHHhcCCCCceEEEEe
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++.++....... .|.. ........++.+.+++++++|+++|||+
T Consensus 162 P~dv~~~~~~~~~~~-~~~~--------------------------------~~~~~~~~~~~~~v~~~~~~l~~a~rpv 208 (563)
T 2uz1_A 162 PWDILMNQIDEDSVI-IPDL--------------------------------VLSAHGARPDPADLDQALALLRKAERPV 208 (563)
T ss_dssp EHHHHHCEEEGGGSC-CCCC--------------------------------CCCSSCCBCCHHHHHHHHHHHHHCSSEE
T ss_pred CHHHhhhhccccccc-cccc--------------------------------ccCCCCCCCCHHHHHHHHHHHHcCCCcE
Confidence 999665442211100 0000 0001123467888999999999999999
Q ss_pred EEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCC-CcccccHH------HHhhhcCCCEEEEeCCccccccccC
Q psy14416 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDA-HPNCVSAA------RTHALQNADLVLLLGARLNWILHFG 576 (1065)
Q Consensus 504 IlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~-hpl~lg~~------~~~al~~aDlVI~iG~~~~~~~~~g 576 (1065)
|++|.++.++++.+++++|+|++|+||++++++||.++++ ||+++|.. .++ +++||+||.+|++++++.+..
T Consensus 209 il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~~~p~~~G~~g~~~~~~~~-~~~aDlvl~iG~~~~~~~~~~ 287 (563)
T 2uz1_A 209 IVLGSEASRTARKTALSAFVAATGVPVFADYEGLSMLSGLPDAMRGGLVQNLYSFAKA-DAAPDLVLMLGARFGLNTGHG 287 (563)
T ss_dssp EEECHHHHHHTCHHHHHHHHHHHCCCEEECGGGGGGGTTSCGGGEEEEGGGGGGTTTT-TCCCSEEEEESCCSSGGGTTT
T ss_pred EEECCccccccHHHHHHHHHHHhCCcEEEcCcccCcCCCCCChhhcCCCCCCCHHHHh-hcCCCEEEEECCCCccccccc
Confidence 9999998877888999999999999999999999999999 99998632 234 789999999999999877654
Q ss_pred CCccccC-CCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHH-HHHhhhhcccc
Q psy14416 577 RAPRFKS-NVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKL-KCQTNRQVKLP 654 (1065)
Q Consensus 577 ~~~~~~~-~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~-~~~~~~~~~~~ 654 (1065)
|. .+.+ +.++||||.|+.++++++..++.+++|++.+|++|.+.++... . ......|.+++++ .++...+....
T Consensus 288 ~~-~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (563)
T 2uz1_A 288 SG-QLIPHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALAQATAQDA--A-WPDRGDWCAKVTDLAQERYASIAAK 363 (563)
T ss_dssp SC-SSSCTTSEEEEECSCGGGTTSSSCCSEEECSCHHHHHHHHHHHHTTSC--C-CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc-ccCCCCCeEEEEECCHHHhCCCCCCCeEEEcCHHHHHHHHHHhhhhcc--c-ccCcHHHHHHHHHHHHHHhHhhhhc
Confidence 43 3444 6899999999999999999999999999999999998775210 0 0123568776665 43332211100
Q ss_pred hhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCc
Q psy14416 655 VILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIY 734 (1065)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~ 734 (1065)
.. ... ++ + +..+++ .|.+.+|++++++.|.|.+
T Consensus 364 ~~---------------------------~~~-~~-----~---~~~~~~-----------~l~~~l~~~~iv~~d~G~~ 396 (563)
T 2uz1_A 364 SS---------------------------SEH-AL-----H---PFHASQ-----------VIAKHVDAGVTVVADGALT 396 (563)
T ss_dssp CC---------------------------CSS-SC-----C---HHHHHH-----------HHHTTCSTTEEEEECSSHH
T ss_pred cc---------------------------cCC-Cc-----C---HHHHHH-----------HHHHhCCCCcEEEEcCchH
Confidence 00 011 45 6 778888 9999999999999999876
Q ss_pred CcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccc
Q psy14416 735 GGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIV 814 (1065)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 814 (1065)
..|..+++.. . -|. .+++
T Consensus 397 ~~~~~~~~~~-----~----~~~---------------------------------------------~~~~-------- 414 (563)
T 2uz1_A 397 YLWLSEVMSR-----V----KPG---------------------------------------------GFLC-------- 414 (563)
T ss_dssp HHHHHHHHTT-----S----CCS---------------------------------------------EEEC--------
T ss_pred HHHHHHhccc-----c----CCC---------------------------------------------eEEC--------
Confidence 6665443321 0 000 0000
Q ss_pred cccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccE
Q psy14416 815 ESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVI 894 (1065)
Q Consensus 815 ~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~ 894 (1065)
++-+|+| |+++++++ |++++.+ . |++
T Consensus 415 ------------------~~g~g~~----------------------------G~~l~~Ai--Gaa~a~~--~----~~~ 440 (563)
T 2uz1_A 415 ------------------HGYLGSM----------------------------GVGFGTAL--GAQVADL--E----AGR 440 (563)
T ss_dssp ------------------CCTTCCT----------------------------TTHHHHHH--HHHHHHH--H----HTC
T ss_pred ------------------CCCCccc----------------------------cChHHHHH--HHHHHhh--C----CCC
Confidence 1223444 77777777 8887753 1 678
Q ss_pred EEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCC
Q psy14416 895 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 974 (1065)
Q Consensus 895 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~ 974 (1065)
+|+ +++|||+| +|+.++++++ .++++|+++||+||+| |+.
T Consensus 441 ~vv---------------------------------~i~GDG~~-~~~~~~L~ta-----~~~~l~~~ivv~nN~~-~~~ 480 (563)
T 2uz1_A 441 RTI---------------------------------LVTGDGSV-GYSIGEFDTL-----VRKQLPLIVIIMNNQS-WGA 480 (563)
T ss_dssp EEE---------------------------------EEEEHHHH-GGGTTHHHHH-----HHHTCCCEEEEEECSB-CHH
T ss_pred eEE---------------------------------EEEccHHH-hCCHHHHHHH-----HHhCCCeEEEEEeCCc-chH
Confidence 899 99999999 9999999999 9999999999999988 332
Q ss_pred CchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCc
Q psy14416 975 FDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKP 1053 (1065)
Q Consensus 975 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~ 1053 (1065)
.... ....+ +. .. ......+.+||.++|++||+++++|++.+||+++++++++. ++|+||||.+++ ++..|
T Consensus 481 ~~~~-~~~~~--~~-~~--~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~-~gp~liev~~~~-~~~~p 551 (563)
T 2uz1_A 481 TLHF-QQLAV--GP-NR--VTGTRLENGSYHGVAAAFGADGYHVDSVESFSAALAQALAH-NRPACINVAVAL-DPIPP 551 (563)
T ss_dssp HHHH-HHHHT--CT-TC--CCSCBCCCCCHHHHHHHTTCEEEEECSHHHHHHHHHHHHHS-SSCEEEEEECCS-CCCCH
T ss_pred HHHH-HHHhc--CC-Cc--ccCCcCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHHC-CCCEEEEEEecc-ccCCc
Confidence 2211 11111 10 00 01112256899999999999999999999999999999986 899999999994 34444
No 11
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=100.00 E-value=8.6e-75 Score=710.20 Aligned_cols=541 Identities=13% Similarity=0.116 Sum_probs=421.2
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
.++++++|++.|+++||++|||+||+++++|++++.+ .+|++|.++||++|+|||+||||+||||+||+||||||++|+
T Consensus 30 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aA~GyAr~tgkpgv~~~TsGpG~~N~ 109 (604)
T 2x7j_A 30 ITHYIGSFIDEFALSGITDAVVCPGSRSTPLAVLCAAHPDISVHVQIDERSAGFFALGLAKAKQRPVLLICTSGTAAANF 109 (604)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEECCCSTTHHHHHHHHHCTTCEEEECSSHHHHHHHHHHHHHHHTSCEEEEECSSHHHHTT
T ss_pred hHHHHHHHHHHHHHcCCCEEEECcCcccHHHHHHHHhCCCceEEEecChHHHHHHHHHHHHhhCCCEEEEECChhHHHHH
Confidence 4689999999999999999999999999999999976 479999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhh-------HHHHHHHHHHHhhcCCCC
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHL-------IGQHVEKAVRLSTFGKPG 417 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~-------i~~~i~~A~~~A~~~~~G 417 (1065)
++||++|+.+++|||+|||++|.++++++++|++||.++|+++|||+++++++++ +++.+++|++.|.+++||
T Consensus 110 ~~gia~A~~~~vPlv~ItG~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~G 189 (604)
T 2x7j_A 110 YPAVVEAHYSRVPIIVLTADRPHELREVGAPQAINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMG 189 (604)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCGGGSSSCCTTCCCCTTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHhhcCCCEEEEeCCCCHHHhCCCCCCcCcHHHHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCC
Confidence 9999999999999999999999999999999999999999999999999999997 999999999999999999
Q ss_pred EEEEecChhhhhhccccccCCC--CCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHH
Q psy14416 418 VSYLDFPANLLAQRINQSALVP--TPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRL 495 (1065)
Q Consensus 418 PV~L~iP~Dv~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~ 495 (1065)
||||+||.|++..+.......+ ..... + ...+..+.++.+.+++++++
T Consensus 190 PV~l~iP~d~~~~~~~~~~~~~~~~~~~~------~------------------------~~~~~~~~~~~~~i~~~~~~ 239 (604)
T 2x7j_A 190 PVHVNVPLREPLMPDLSDEPFGRMRTGRH------V------------------------SVKTGTQSVDRESLSDVAEM 239 (604)
T ss_dssp EEEEEEECCSCCCCCTTSCTTCCSSSSCS------S------------------------EEECCEEECCTGGGHHHHHH
T ss_pred cEEEEcccCccCCCccccccccccccccc------c------------------------cccccCccCChhhHHHHHHH
Confidence 9999999998654432111000 00000 0 00001122455678999999
Q ss_pred HHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCC-CCCCcccccHH--------HHhhhcCCCEEEEeC
Q psy14416 496 ILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVV-PDAHPNCVSAA--------RTHALQNADLVLLLG 566 (1065)
Q Consensus 496 L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v-~~~hpl~lg~~--------~~~al~~aDlVI~iG 566 (1065)
|++||||+|++|.++ .+++.+++++|||++|+||++++++++.+ +++||+++|.. ..+.++ +|+||.+|
T Consensus 240 l~~A~rPvIl~G~g~-~~~a~~~l~~lae~~~~PV~~t~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~-~Dlvl~iG 317 (604)
T 2x7j_A 240 LAEAEKGMIVCGELH-SDADKENIIALSKALQYPILADPLSNLRNGVHDKSTVIDAYDSFLKDDELKRKLR-PDVVIRFG 317 (604)
T ss_dssp HHHCSSEEEEECCCC-CHHHHHHHHHHHHHHTCCEEECGGGTTTBSSSCCTTEECCHHHHTTSHHHHHHHC-CSEEEEES
T ss_pred HhhcCCeEEEECCCC-cHHHHHHHHHHHHhcCceEEEcccccccccCCCCcceechHHHHhcCchhhhhcC-CCEEEEEC
Confidence 999999999999998 56778999999999999999999988766 78899987732 234454 89999999
Q ss_pred CccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHH
Q psy14416 567 ARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQ 646 (1065)
Q Consensus 567 ~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~ 646 (1065)
+++.++.+..|.+.. ++.++||||.|+.++++++.+++.+++|++.+|++|.+.++. ......|.++|++..+
T Consensus 318 ~~~~~~~~~~~~~~~-~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~------~~~~~~w~~~~~~~~~ 390 (604)
T 2x7j_A 318 PMPVSKPVFLWLKDD-PTIQQIVIDEDGGWRDPTQASAHMIHCNASVFAEEIMAGLTA------ATRSSEWLEKWQFVNG 390 (604)
T ss_dssp SCCSCHHHHHHHHHC-TTSEEEEECTTCCCCCTTSCCSEEECSCHHHHHHHHHHTSCS------SCCCCHHHHHHHHHHH
T ss_pred CcCccHHHHHHHhhC-CCCeEEEECCCCCccCCCccceEEEEcCHHHHHHHHHHhhcC------CCCcHHHHHHHHHHHH
Confidence 999877655554322 256899999999999999999999999999999999887630 0123578877765544
Q ss_pred hhhhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEE
Q psy14416 647 TNRQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 726 (1065)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~i 726 (1065)
..++...+. ....++ + +..+++ .|.+.+|++++
T Consensus 391 ~~~~~~~~~----------------------------~~~~~~-----~---~~~~~~-----------~L~~~lp~d~i 423 (604)
T 2x7j_A 391 RFREHLQTI----------------------------SSEDVS-----F---EGNLYR-----------ILQHLVPENSS 423 (604)
T ss_dssp HHHHHHHTS----------------------------CCCCTT-----S---HHHHHH-----------HHHHHSCTTCE
T ss_pred HHHHHHHhh----------------------------cccCCC-----C---HHHHHH-----------HHHHhCCCCCE
Confidence 333221111 011245 6 778888 99999999999
Q ss_pred EEECCCCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccC
Q psy14416 727 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 806 (1065)
Q Consensus 727 lv~d~G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (1065)
|+.|+|+..+|..+++.. .. -|.
T Consensus 424 v~~d~g~~~~~~~~~~~~-----~~---~~~------------------------------------------------- 446 (604)
T 2x7j_A 424 LFVGNSMPIRDVDTFFEK-----QD---RPF------------------------------------------------- 446 (604)
T ss_dssp EEECTTHHHHHHHHHCCC-----BS---CCC-------------------------------------------------
T ss_pred EEEECCHHHHHHHHhccc-----CC---CCc-------------------------------------------------
Confidence 999998766664322210 00 000
Q ss_pred cccccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccc
Q psy14416 807 ETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGE 886 (1065)
Q Consensus 807 ~g~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~ 886 (1065)
.++.|.| .|+| |.++|+++ |++++
T Consensus 447 ---------------------~~~~~~G-~~~i----------------------------g~~l~~Ai--Gaala---- 470 (604)
T 2x7j_A 447 ---------------------RIYSNRG-ANGI----------------------------DGVVSSAM--GVCEG---- 470 (604)
T ss_dssp ---------------------EEECCTT-TCCS----------------------------SSHHHHHH--HHHHH----
T ss_pred ---------------------eEEeCCC-cCCc----------------------------CcHHHHHH--HHHhc----
Confidence 0111222 2233 55556555 67766
Q ss_pred cccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEE
Q psy14416 887 VTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 966 (1065)
Q Consensus 887 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 966 (1065)
++++|+ +++|||+| +|+.++++++ +++++|++|||+
T Consensus 471 -----~~~~vv---------------------------------~i~GDGsf-~~~~~eL~ta-----~~~~lp~~ivv~ 506 (604)
T 2x7j_A 471 -----TKAPVT---------------------------------LVIGDLSF-YHDLNGLLAA-----KKLGIPLTVILV 506 (604)
T ss_dssp -----HTSCEE---------------------------------EEEEHHHH-HHTGGGGHHH-----HHHCCCEEEEEE
T ss_pred -----CCCcEE---------------------------------EEEccHHH-HhHHHHHHHh-----hhcCCCeEEEEE
Confidence 356788 99999999 9999999999 999999999999
Q ss_pred cCCc--ccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEE
Q psy14416 967 NNNG--IYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINIL 1044 (1065)
Q Consensus 967 nn~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~ 1044 (1065)
||+| +++.++.......++ ..+...+++||.++|++||+++++|++.+||+++|+++++. ++|+||||.
T Consensus 507 NN~~~~i~~~~~~~q~~~~~~--------~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~-~gp~liev~ 577 (604)
T 2x7j_A 507 NNDGGGIFSFLPQASEKTHFE--------DLFGTPTGLDFKHAAALYGGTYSCPASWDEFKTAYAPQADK-PGLHLIEIK 577 (604)
T ss_dssp ECSSCGGGGGSGGGSCHHHHH--------HHTTCCCCCCTHHHHHHTTCEEECCSSHHHHHHHCCCCCSS-CCEEEEEEE
T ss_pred eCCCCcccccCCCCccchhhH--------hhccCCCCCCHHHHHHHcCCeEEecCCHHHHHHHHHHHHhC-CCCEEEEEE
Confidence 9987 443333221111110 01223467999999999999999999999999999999876 899999999
Q ss_pred eCCCCCCCcchhhh
Q psy14416 1045 INPSADRKPQNFSW 1058 (1065)
Q Consensus 1045 ~~~~~~~~~~~~~~ 1058 (1065)
++++++.+..+..|
T Consensus 578 ~~~~~~~~~~~~~~ 591 (604)
T 2x7j_A 578 TDRQSRVQLHRDML 591 (604)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCccccHHHHHHHH
Confidence 99877765544433
No 12
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=100.00 E-value=2.7e-73 Score=698.76 Aligned_cols=541 Identities=19% Similarity=0.246 Sum_probs=429.3
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHh-CCCeEEEEeccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLT-KKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~t-gkpgv~~~tsGpG~~N 343 (1065)
.++++++|++.|+++||+++||+||+++++|++++.+ .+|++|.++||++|+|||+||||+| |+|+||++|+|||++|
T Consensus 26 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgg~~~v~~~TsGpG~~N 105 (616)
T 2pan_A 26 KMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTD 105 (616)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHHHHSTTCCEEEEECSTHHHHT
T ss_pred cCcHHHHHHHHHHHCCCCEEEECCCCccHHHHHHHHhcCCCcEEeeCCHHHHHHHHHHHHHhcCCCceEEEeCCCchHHH
Confidence 4689999999999999999999999999999999976 5799999999999999999999999 8999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
+++||++|+.+++|||+|||++|.++.+++++|++||.++|+++|||++++++++++++.+++|++.|.++|||||||+|
T Consensus 106 ~~~~l~~A~~~~vPlvvItg~~p~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~r~GPV~l~i 185 (616)
T 2pan_A 106 MITALYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLVDL 185 (616)
T ss_dssp SHHHHHHHHHTTCCEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCCEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEecCCcccccCcccccccCHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcCCCceEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++..+.+..... .. ..+...+.++.+.+++++++|+++|||+
T Consensus 186 P~d~~~~~~~~~~~~---~~--------------------------------~~~~~~~~~~~~~i~~~~~~l~~a~rpv 230 (616)
T 2pan_A 186 PFDVQVAEIEFDPDM---YE--------------------------------PLPVYKPAASRMQIEKAVEMLIQAERPV 230 (616)
T ss_dssp EHHHHHSEEECCGGG---CC--------------------------------CCCCCCCCCCHHHHHHHHHHHHTCSSEE
T ss_pred chhhhhccccccccc---cc--------------------------------ccccCCCCCCHHHHHHHHHHHHcCCCeE
Confidence 999987654321000 00 0000112234788999999999999999
Q ss_pred EEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH--------HHHhhhcCCCEEEEeCCcccccccc
Q psy14416 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLGARLNWILHF 575 (1065)
Q Consensus 504 IlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~--------~~~~al~~aDlVI~iG~~~~~~~~~ 575 (1065)
|++|.++.++.+.+++++|+|++|+||++++++||.++++||+++|. ..++++++||+||.+|+++++..+
T Consensus 231 il~G~g~~~~~a~~~l~~lae~~~~PV~~t~~~~g~~~~~hp~~~G~~g~~~~~~~~~~~l~~aDlvl~iG~~~~~~~~- 309 (616)
T 2pan_A 231 IVAGGGVINADAAALLQQFAELTSVPVIPTLMGWGCIPDDHELMAGMVGLQTAHRYGNATLLASDMVFGIGNRFANRHT- 309 (616)
T ss_dssp EEECHHHHHTTCHHHHHHHHHHHTCCEEECTTTTTSSCTTSTTBCCCCSSSSCCHHHHHHHHHCSEEEEESCCCCHHHH-
T ss_pred EEECCCcCcccHHHHHHHHHHHhCCCEEEccccCccCCCCCccccCCccccCCHHHHHHHHHhCCEEEEECCCCccccc-
Confidence 99999887777789999999999999999999999999999998872 556778999999999999986443
Q ss_pred CCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccch
Q psy14416 576 GRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPV 655 (1065)
Q Consensus 576 g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 655 (1065)
+++..+.++.++||||.|+.++++.+..++.+++|+..+|++|.+.+...... ....+.+|++.+++..+....... .
T Consensus 310 ~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~ 387 (616)
T 2pan_A 310 GSVEKYTEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVAQEMQKA-GRLPCRKEWVADCQQRKRTLLRKT-H 387 (616)
T ss_dssp SSHHHHHTTCEEEEEESCGGGTTSSSCCSSCEECCHHHHHHHHHHHHHHHHHT-TCSCCCHHHHHHHHHHHTTSEECC-C
T ss_pred CcccccCCCCeEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHHhhhcccc-cccccHHHHHHHHHHHHhhhhhcc-c
Confidence 33334556788999999999999999999999999999999998876421000 011235676655433322111000 0
Q ss_pred hhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcC
Q psy14416 656 ILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG 735 (1065)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~ 735 (1065)
....++ + +..++. .|.+.+|++.+++.|.|.+.
T Consensus 388 ----------------------------~~~~~~-----~---~~~~~~-----------~L~~~l~~~~ivv~d~G~~~ 420 (616)
T 2pan_A 388 ----------------------------FDNVPV-----K---PQRVYE-----------EMNKAFGRDVCYVTTIGLSQ 420 (616)
T ss_dssp ----------------------------CCCSSB-----C---HHHHHH-----------HHHHHSCTTEEEEECSSHHH
T ss_pred ----------------------------cCCCCc-----C---HHHHHH-----------HHHHhCCCCcEEEEcCcHHH
Confidence 012345 6 778888 99999999999999998655
Q ss_pred cccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccc
Q psy14416 736 GFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVE 815 (1065)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 815 (1065)
.|...++.. ..| +.++
T Consensus 421 ~~~~~~~~~-----------------------------------------------~~~-------~~~~---------- 436 (616)
T 2pan_A 421 IAAAQMLHV-----------------------------------------------FKD-------RHWI---------- 436 (616)
T ss_dssp HHHHHHCCC-----------------------------------------------CST-------TSEE----------
T ss_pred HHHHHhccc-----------------------------------------------CCC-------CeEE----------
Confidence 553321110 000 1122
Q ss_pred ccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEE
Q psy14416 816 SGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVIL 895 (1065)
Q Consensus 816 ~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 895 (1065)
|+|.+|+| |+++++++ |++++. |+++
T Consensus 437 ----------------~~g~~G~~----------------------------G~~l~~Ai--Gaala~--------~~~~ 462 (616)
T 2pan_A 437 ----------------NCGQAGPL----------------------------GWTIPAAL--GVCAAD--------PKRN 462 (616)
T ss_dssp ----------------ECTTTCCT----------------------------TCHHHHHH--HHHHHC--------TTCE
T ss_pred ----------------cCCCcccc----------------------------cchHHHHH--HHHHhC--------CCCc
Confidence 23446666 88888888 888888 8899
Q ss_pred EEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCC
Q psy14416 896 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 975 (1065)
Q Consensus 896 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~ 975 (1065)
|+ +++|||+| +|+.++|+++ .++++|+++||+||+| |+.+
T Consensus 463 vv---------------------------------~i~GDGs~-~~~~~~L~ta-----~~~~l~~~ivv~NN~~-~~~~ 502 (616)
T 2pan_A 463 VV---------------------------------AISGDFDF-QFLIEELAVG-----AQFNIPYIHVLVNNAY-LGLI 502 (616)
T ss_dssp EE---------------------------------EEEEHHHH-HHTGGGHHHH-----HHTTCCCEEEEEECSB-CHHH
T ss_pred EE---------------------------------EEEcchhh-hCCHHHHHHH-----HHhCCCeEEEEEECCc-chHH
Confidence 99 99999999 9999999999 9999999999999987 3322
Q ss_pred chhhHhHHhhcCCc---ccCCCCCC---CCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHh----cCCCCEEEEEEe
Q psy14416 976 DEATYASIVESGEV---TTVSPPTS---LGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQ----TTTRPSLINILI 1045 (1065)
Q Consensus 976 ~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~----~~~~~~li~~~~ 1045 (1065)
... ..... +.. ..+..... ..+.+||.++|++||+++++|++.+||+++|+++++ . ++|+||||.+
T Consensus 503 ~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~~~-~gp~lIev~~ 578 (616)
T 2pan_A 503 RQS--QRAFD-MDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQY-RVPVVVEVIL 578 (616)
T ss_dssp HHH--GGGGT-CCCSCBCCCCCTTCGGGTTCCCCHHHHHHHTTCEEEEECSGGGHHHHHHHHHHHHHHH-CSCEEEEEEB
T ss_pred HHH--HHHhc-CCccccccccccccccCCCCCCCHHHHHHHcCCeEEEECCHHHHHHHHHHHHhhcccC-CCcEEEEEEe
Confidence 111 11110 100 00111111 123589999999999999999999999999999987 5 8999999999
Q ss_pred CCCCCCCc
Q psy14416 1046 NPSADRKP 1053 (1065)
Q Consensus 1046 ~~~~~~~~ 1053 (1065)
++.+..++
T Consensus 579 ~~~~~~~~ 586 (616)
T 2pan_A 579 ERVTNISM 586 (616)
T ss_dssp CSCCCCCB
T ss_pred cccccCCC
Confidence 99886554
No 13
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=100.00 E-value=5.5e-73 Score=684.22 Aligned_cols=518 Identities=18% Similarity=0.256 Sum_probs=419.9
Q ss_pred ccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccccc
Q psy14416 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 346 (1065)
Q Consensus 267 ~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~ 346 (1065)
++++++|++.|+++||+++||+||+++++|++++. ++|++|.++||++|+|||+||||+||||+||++|+|||++|+++
T Consensus 2 ~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~-~~i~~i~~~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~~~ 80 (528)
T 1q6z_A 2 ASVHGTTYELLRRQGIDTVFGNPGSNALPFLKDFP-EDFRYILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMG 80 (528)
T ss_dssp CBHHHHHHHHHHHTTCCEEEECCCGGGHHHHTTCC-TTCEEEECSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTHH
T ss_pred CcHHHHHHHHHHHCCCCEEEECCCcchHHHHHHHh-hcCcEEEECcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHHHH
Confidence 47999999999999999999999999999999994 57999999999999999999999999999999999999999999
Q ss_pred ccccccccCcceEeecCCCccCCCCCCCCCc-cChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecCh
Q psy14416 347 GMANAQINCWPMLVIGGSCAQDHEGIGGFQE-CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPA 425 (1065)
Q Consensus 347 av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~-idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~ 425 (1065)
||++|+.+++|||+|||++|.++++++++|+ +||.++|+++|||+.++++++++++.+++|++.|.+++||||||+||.
T Consensus 81 ~l~~A~~~~~Pll~itg~~~~~~~~~~~~q~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 160 (528)
T 1q6z_A 81 ALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPY 160 (528)
T ss_dssp HHHHHHHTTCCEEEEEEECCHHHHTTTCTTCCTTGGGSSTTSCSCEECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEG
T ss_pred HHHHHhhcCCCEEEEeCCCcccccCCCcccccccHHHHHHHhhHhhhcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEech
Confidence 9999999999999999999999999999999 799999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q psy14416 426 NLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505 (1065)
Q Consensus 426 Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvIl 505 (1065)
|++..+.+..... .+. ........++.+.+++++++|+++|||+|+
T Consensus 161 d~~~~~~~~~~~~-~~~---------------------------------~~~~~~~~~~~~~i~~~~~~l~~a~rpvil 206 (528)
T 1q6z_A 161 DDWDKDADPQSHH-LFD---------------------------------RHVSSSVRLNDQDLDILVKALNSASNPAIV 206 (528)
T ss_dssp GGTTSBCCGGGGG-GTT---------------------------------CCCCCCCCCCHHHHHHHHHHHHHCSSCEEE
T ss_pred hhhhCcccccccc-ccc---------------------------------cCCCCCCCCCHHHHHHHHHHHhcCCCeEEE
Confidence 9987654321100 000 001112346788899999999999999999
Q ss_pred EccCCCchhHHHHHHHHHhhcCCCE-EecCCCCCCCCCCCcccccH------HHHhhhcCCCEEEEeCCccccccccCCC
Q psy14416 506 IGKGAAYSQAETELLSFVNSFNLPF-LPTPMGKGVVPDAHPNCVSA------ARTHALQNADLVLLLGARLNWILHFGRA 578 (1065)
Q Consensus 506 vG~g~~~~~a~~~L~~LAe~lg~PV-~tt~~gkg~v~~~hpl~lg~------~~~~al~~aDlVI~iG~~~~~~~~~g~~ 578 (1065)
+|.++..+++.+++++|+|++|+|| +++.++|+.++++||+++|. ..++++++||+||.+|+++.++.+..|.
T Consensus 207 ~G~g~~~~~a~~~l~~lae~~~~Pv~~~~~~g~g~~~~~~p~~~G~~g~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~ 286 (528)
T 1q6z_A 207 LGPDVDAANANADCVMLAERLKAPVWVAPSAPRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPG 286 (528)
T ss_dssp ECHHHHHTTCHHHHHHHHHHHTCCEEECSSCSBCCSCTTSTTEEEECCSCHHHHHHHHTTCSEEEEESSCTTCCCSCCCS
T ss_pred ECCccchhhHHHHHHHHHHHHCCCEEEeccCccccCCCCCccccCcCCCCcHHHHHHHhcCCEEEEECCCCccccccCcC
Confidence 9998877777899999999999999 67778999999999999873 4567789999999999999998877776
Q ss_pred ccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhh
Q psy14416 579 PRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILV 658 (1065)
Q Consensus 579 ~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~ 658 (1065)
..++++.++||||.|+.++++. .+++.+++|++.+|++|.+.++... .|.. ++++.....
T Consensus 287 ~~~~~~~~~i~id~d~~~~~~~-~~~~~i~~d~~~~l~~L~~~~~~~~---------~~~~-------~~~~~~~~~--- 346 (528)
T 1q6z_A 287 QYLKPGTRLISVTCDPLEAARA-PMGDAIVADIGAMASALANLVEESS---------RQLP-------TAAPEPAKV--- 346 (528)
T ss_dssp CSSCTTCEEEEEESCHHHHHHC-SSSEEEESCHHHHHHHHHHHSCCCC---------SCCC-------CCCCCCCCC---
T ss_pred CcCCCCCeEEEEeCCHHHhCCC-CCCeeEeCCHHHHHHHHHHHhhccc---------cchH-------HHHhhhhcc---
Confidence 5555678999999999999998 8999999999999999988775210 1110 011110000
Q ss_pred hhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCccc
Q psy14416 659 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 738 (1065)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~~ 738 (1065)
. ....++ + +..+++ .|.+.+|++++++.|+|++..|.
T Consensus 347 ----------------~--------~~~~~~-----~---~~~~~~-----------~l~~~l~~~~iv~~d~g~~~~~~ 383 (528)
T 1q6z_A 347 ----------------D--------QDAGRL-----H---PETVFD-----------TLNDMAPENAIYLNESTSTTAQM 383 (528)
T ss_dssp ----------------C--------CCSSSB-----C---HHHHHH-----------HHHHHSCTTCEEEEECTTSHHHH
T ss_pred ----------------c--------ccCCCc-----C---HHHHHH-----------HHHhhCCCCeEEEECCcccHHHH
Confidence 0 012245 6 778888 99999999999999999877765
Q ss_pred ccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccccc
Q psy14416 739 ETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGE 818 (1065)
Q Consensus 739 ~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 818 (1065)
.+++.. . .+ +
T Consensus 384 ~~~~~~-----~------------------------------------------~~-------------~---------- 393 (528)
T 1q6z_A 384 WQRLNM-----R------------------------------------------NP-------------G---------- 393 (528)
T ss_dssp HHHCCC-----C------------------------------------------SS-------------S----------
T ss_pred HHhccc-----c------------------------------------------CC-------------C----------
Confidence 433221 0 00 0
Q ss_pred eeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEEE
Q psy14416 819 VTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 898 (1065)
Q Consensus 819 ~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 898 (1065)
.++.|.| |+| |+++++++ |++++. |+++|+
T Consensus 394 ---------~~~~~~g--g~~----------------------------G~~l~~A~--G~a~a~--------~~~~vv- 423 (528)
T 1q6z_A 394 ---------SYYFCAA--GGL----------------------------GFALPAAI--GVQLAE--------PERQVI- 423 (528)
T ss_dssp ---------CEEECTT--CCT----------------------------TSHHHHHH--HHHHHC--------TTSCEE-
T ss_pred ---------cEECCCC--ccc----------------------------cchHHHHH--HHHHhC--------CCCcEE-
Confidence 0122233 555 78778777 888887 888899
Q ss_pred ccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchh
Q psy14416 899 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEA 978 (1065)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~ 978 (1065)
+++|||+| +|+.++++++ .++++|+++||+||+| |+.+...
T Consensus 424 --------------------------------~~~GDG~~-~~~~~~l~~a-----~~~~l~~~ivv~nN~~-~~~~~~~ 464 (528)
T 1q6z_A 424 --------------------------------AVIGDGSA-NYSISALWTA-----AQYNIPTIFVIMNNGT-YGALRWF 464 (528)
T ss_dssp --------------------------------EEEEHHHH-TTTGGGHHHH-----HHHTCCCEEEEEECSB-CHHHHHH
T ss_pred --------------------------------EEECCcHH-HhhHHHHHHH-----HHhCCCeEEEEEeCCc-chHhHHH
Confidence 99999999 9999999999 9999999999999987 3321111
Q ss_pred hHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCC
Q psy14416 979 TYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSA 1049 (1065)
Q Consensus 979 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~ 1049 (1065)
........ ..... .+.+||.++|++||+++++|++.+||+++|+++++. ++|+||||.++++.
T Consensus 465 --~~~~~~~~----~~~~~-~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~-~gp~liev~~~~~~ 527 (528)
T 1q6z_A 465 --AGVLEAEN----VPGLD-VPGIDFRALAKGYGVQALKADNLEQLKGSLQEALSA-KGPVLIEVSTVSPV 527 (528)
T ss_dssp --HHHHTCCS----CCSCB-CCCCCHHHHHHHHTCEEEEESSHHHHHHHHHHHHTC-SSCEEEEEEBCC--
T ss_pred --HHHhcCCC----cccCC-CCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHHC-CCcEEEEEEecCCC
Confidence 11110111 11122 267999999999999999999999999999999986 89999999998764
No 14
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=100.00 E-value=6.1e-74 Score=698.77 Aligned_cols=528 Identities=20% Similarity=0.244 Sum_probs=417.1
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCc-hhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIP-VIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~-~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
.++++++|++.|+++||+++||+||++ +++|++++. . |++|.++||++|+|||+||||+||||+||+||+|||++|+
T Consensus 11 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~~l~~al~-~-i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~ 88 (573)
T 2iht_A 11 KPTAAHALLSRLRDHGVGKVFGVVGREAASILFDEVE-G-IDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGMTNL 88 (573)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCCGGGGTCCSCSST-T-CEEEECSSHHHHHHHHHHHHHHHCSCEEEEECTTHHHHHH
T ss_pred CccHHHHHHHHHHHCCCCEEEEecCCcchhHHHHHHc-C-CeEEeeCCHHHHHHHHHHHHHHHCCCEEEEEccCchHHHH
Confidence 479999999999999999999999999 999999998 5 9999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCC-CCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGI-GGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~-ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
++||++|+.+++|||+|||++|.+++++ +++|++||.++|+++|||++++++++++++.+++|++.|.++|||||||+|
T Consensus 89 ~~~v~~A~~~~~Pll~itg~~~~~~~~~~~~~Q~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~i 168 (573)
T 2iht_A 89 STGIATSVLDRSPVIALAAQSESHDIFPNDTHQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISL 168 (573)
T ss_dssp HHHHHHHHHHTCCEEEEEEESCGGGCCTTTSTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHTBSSCCCEEEEE
T ss_pred HHHHHHHHhhCCCEEEEcccCcccccCCcCccccCCHHHHHHhHhhEEEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred Chhhhhhccccc-cCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCC--CCCCHHHHHHHHHHHHhCC
Q psy14416 424 PANLLAQRINQS-ALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTL--PWPGIAELKQASRLILEAK 500 (1065)
Q Consensus 424 P~Dv~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~v~~~ae~L~~Ak 500 (1065)
|.|++..+.... ...+.+.. + ...+.. ..++.+.+++++++|+++|
T Consensus 169 P~dv~~~~~~~~~~~~~~~~~-----~--------------------------~~~~~~~~~~~~~~~v~~~~~~l~~a~ 217 (573)
T 2iht_A 169 PVDLLGSSEGIDTTVPNPPAN-----T--------------------------PAKPVGVVADGWQKAADQAAALLAEAK 217 (573)
T ss_dssp EHHHHTCCTTCC---CCCCCC-----C--------------------------CSSCBEEECTTHHHHHHHHHHHHHHCS
T ss_pred cchHhhhhhcccccCCccccc-----c--------------------------CCCCccccCCCCHHHHHHHHHHHHcCC
Confidence 999986651100 00000000 0 000000 1356788999999999999
Q ss_pred CcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHH------------HHhhhcCCCEEEEeCCc
Q psy14416 501 APLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAA------------RTHALQNADLVLLLGAR 568 (1065)
Q Consensus 501 rPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~------------~~~al~~aDlVI~iG~~ 568 (1065)
||+|++|.++..+++.+++++|+|++|+||++++++|+.+|++||+++|.. .++++++||+||.+|++
T Consensus 218 rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~hp~~~G~~~~~~~g~~~~~~~~~~l~~aDlvl~iG~~ 297 (573)
T 2iht_A 218 HPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVGHELNYGAVTGYMDGILNFPALQTMFAPVDLVLTVGYD 297 (573)
T ss_dssp SEEEEECHHHHHTTCHHHHHHHHHHHTCCEEECSTTTTSSCTTCTTEEEECCTTHHHHHTSCHHHHHHTTCCEEEEETCC
T ss_pred CeEEEECCCccccCHHHHHHHHHHHHCCeEEEecccCccCCCCCcCccCccccccCCCCCCHHHHHHHhhCCEEEEECCC
Confidence 999999998877777899999999999999999999999999999987632 34678899999999999
Q ss_pred -cccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHh
Q psy14416 569 -LNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQT 647 (1065)
Q Consensus 569 -~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~ 647 (1065)
+.++.+..|.. .++.++||||.|+..+++++..++.+++|+..+|++|.+.++.. .+..| +.+++.+++
T Consensus 298 ~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~-------~~~~w-~~~~~~~~~ 367 (573)
T 2iht_A 298 YAEDLRPSMWQK--GIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATASF-------GAKQR-HDIEPLRAR 367 (573)
T ss_dssp GGGCCCHHHHCC--SSCCEEEEEESSCCSCTTTCCCSEEEESCHHHHHHHHHHHTTTC-------CCCCC-CCCHHHHHH
T ss_pred ccccccccccCC--CCCCeEEEEeCCHHHhCCCcCCCeeEeCCHHHHHHHHHHhcccc-------CchhH-HHHHHHHHH
Confidence 87766555531 14678999999999999999999999999999999998877521 01223 222222222
Q ss_pred hhhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCC----
Q psy14416 648 NRQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPV---- 723 (1065)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~---- 723 (1065)
......+. . ....++ + +..+++ .|.+.+|+
T Consensus 368 ~~~~~~~~-------------------~--------~~~~~~-----~---~~~~~~-----------~l~~~l~~~~~~ 401 (573)
T 2iht_A 368 IAEFLADP-------------------E--------TYEDGM-----R---VHQVID-----------SMNTVMEEAAEP 401 (573)
T ss_dssp HHHHHTCC-------------------C--------CCSSSB-----C---HHHHHH-----------HHHHHHHHHSCT
T ss_pred hhhhhhcc-------------------c--------cCcCCc-----C---HHHHHH-----------HHHHhcccccCC
Confidence 11111011 0 112245 6 778888 99999998
Q ss_pred -cEEEEECCCCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcc
Q psy14416 724 -ILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIY 802 (1065)
Q Consensus 724 -d~ilv~d~G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1065)
+.+++.|+|.+..|..+++.. ..| +
T Consensus 402 ~~~iv~~d~G~~~~~~~~~~~~-----------------------------------------------~~~-------~ 427 (573)
T 2iht_A 402 GEGTIVSDIGFFRHYGVLFARA-----------------------------------------------DQP-------F 427 (573)
T ss_dssp TCCEEEECSSHHHHHHHHHCCC-----------------------------------------------CST-------T
T ss_pred CCcEEEEcCcHhHHHHHHhcCc-----------------------------------------------CCC-------C
Confidence 999999998766554432210 000 0
Q ss_pred cccCcccccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhhe
Q psy14416 803 GGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIV 882 (1065)
Q Consensus 803 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~ 882 (1065)
.++ + +|-+|+| |+++++++ |++++
T Consensus 428 ~~~-------------------------~-~~g~g~m----------------------------G~~l~~Ai--Gaa~a 451 (573)
T 2iht_A 428 GFL-------------------------T-SAGCSSF----------------------------GYGIPAAI--GAQMA 451 (573)
T ss_dssp SEE-------------------------C-CSSSCCT----------------------------TCHHHHHH--HHHHH
T ss_pred eEE-------------------------c-CCCCccc----------------------------ccHHHHHH--HHHHh
Confidence 011 1 1123444 88888877 88888
Q ss_pred eccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEE
Q psy14416 883 ESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVI 962 (1065)
Q Consensus 883 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 962 (1065)
. |+++|+ +++|||+| +|+.++++++ .++++|++
T Consensus 452 ~--------~~~~vv---------------------------------~i~GDG~~-~~~~~~L~~a-----~~~~l~~~ 484 (573)
T 2iht_A 452 R--------PDQPTF---------------------------------LIAGDGGF-HSNSSDLETI-----ARLNLPIV 484 (573)
T ss_dssp S--------TTSCEE---------------------------------EEEEHHHH-HHTGGGHHHH-----HHHTCCCE
T ss_pred C--------CCCcEE---------------------------------EEEccHHH-HhHHHHHHHH-----HHhCCCeE
Confidence 7 888999 99999999 9999999999 99999999
Q ss_pred EEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEE
Q psy14416 963 LVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLIN 1042 (1065)
Q Consensus 963 ~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~ 1042 (1065)
+||+||+| |+.+... ........... ......+||.++|++||+++++|++.+||+++|+++++. ++|+|||
T Consensus 485 ivv~NN~~-~~~~~~~--~~~~~~~~~~~----~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~-~gp~lie 556 (573)
T 2iht_A 485 TVVVNNDT-NGLIELY--QNIGHHRSHDP----AVKFGGVDFVALAEANGVDATRATNREELLAALRKGAEL-GRPFLIE 556 (573)
T ss_dssp EEEEECSB-CHHHHHH--HHHHHSSCCGG----GTBCCCCCHHHHHHHTTCEEEECCSHHHHHHHHHHHHTS-SSCEEEE
T ss_pred EEEEECCc-chhhHHH--HHHhcCCCcCc----cccCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhC-CCCEEEE
Confidence 99999987 2322111 11111111110 011234899999999999999999999999999999976 8999999
Q ss_pred EEeCC
Q psy14416 1043 ILINP 1047 (1065)
Q Consensus 1043 ~~~~~ 1047 (1065)
|.+++
T Consensus 557 v~~~~ 561 (573)
T 2iht_A 557 VPVNY 561 (573)
T ss_dssp EEBCC
T ss_pred EECCC
Confidence 99998
No 15
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=100.00 E-value=3.4e-72 Score=685.12 Aligned_cols=528 Identities=16% Similarity=0.231 Sum_probs=426.0
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC--CceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE--GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~--~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
+++++++|++.|+++||+++||+||+++++|++++.++ +|++|.++||++|+|||+||||+||||+||++|+|||++|
T Consensus 3 ~~~~a~~lv~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgk~~v~~~tsGpG~~N 82 (590)
T 1v5e_A 3 KINIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGASH 82 (590)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHTTSSSTTCCCEEEECSSHHHHHHHHHHHHHTTCCCCEEEECTTHHHHT
T ss_pred CccHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHhcCCCCeEEeeCCHHHHHHHHHHHHHHHCCCEEEEeCcChHHHH
Confidence 46899999999999999999999999999999999764 7999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
+++||++|+.+++|||+|||++|.++++++++|++||.++|+++|||++++++++++++.+++|++.|.+++|||||| |
T Consensus 83 ~~~gl~~A~~~~vPll~Itg~~p~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-i 161 (590)
T 1v5e_A 83 LINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQNPMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKRGVAVLE-V 161 (590)
T ss_dssp THHHHHHHHHHTCCEEEEEEECCGGGTTTTCTTCCCCHHHHHTTCSEEEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-E
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcccCCCCcccccCHHHHHHhhccEEEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-E
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++..+++........... + ...+ . .++.+.+++++++|+++|||+
T Consensus 162 P~dv~~~~~~~~~~~~~~~~~------------------------~------~~~~-~-~~~~~~i~~~~~~l~~a~rpv 209 (590)
T 1v5e_A 162 PGDFAKVEIDNDQWYSSANSL------------------------R------KYAP-I-APAAQDIDAAVELLNNSKRPV 209 (590)
T ss_dssp ETTGGGCEEEGGGCCCCGGGC------------------------C------CCCC-C-CCCHHHHHHHHHHHHHCSSEE
T ss_pred ccchhhcccCccccccccccc------------------------c------cCCC-C-CCCHHHHHHHHHHHHhCCCeE
Confidence 999987655321100000000 0 0011 1 456788999999999999999
Q ss_pred EEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccC
Q psy14416 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFG 576 (1065)
Q Consensus 504 IlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g 576 (1065)
|++|.++ . ++.+++++|+|++++||++++++||.++++||+++|. ..++++++||+||.+|++++++...+
T Consensus 210 il~G~g~-~-~a~~~l~~lae~~~~Pv~~t~~g~g~~~~~~p~~~G~~g~~g~~~~~~~l~~aDlvl~iG~~~~~~~~~~ 287 (590)
T 1v5e_A 210 IYAGIGT-M-GHGPAVQELARKIKAPVITTGKNFETFEWDFEALTGSTYRVGWKPANETILEADTVLFAGSNFPFSEVEG 287 (590)
T ss_dssp EEECGGG-T-TCHHHHHHHHHHHTCCEEECTTCGGGSCTTCTTEEEESSSSSCHHHHHHHHHCSEEEEESCCCTTTTTTT
T ss_pred EEEcCch-h-HHHHHHHHHHHHHCCCEEEccccCcCCCCCChhhCccCcccCCHHHHHHHHhCCEEEEECCCCcchhccc
Confidence 9999999 6 7789999999999999999999999999999999873 45678899999999999998765211
Q ss_pred CCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchh
Q psy14416 577 RAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVI 656 (1065)
Q Consensus 577 ~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 656 (1065)
. .| ++.++||||.|+..+++++..++.+++|++.+|++|.+.+.. .....|.+++++..++... ..+..
T Consensus 288 ~--~~-~~~~~i~id~d~~~~~~~~~~~~~i~gd~~~~l~~L~~~l~~-------~~~~~w~~~~~~~~~~~~~-~~~~~ 356 (590)
T 1v5e_A 288 T--FR-NVDNFIQIDIDPAMLGKRHHADVAILGDAALAIDEILNKVDA-------VEESAWWTANLKNIANWRE-YINML 356 (590)
T ss_dssp T--TT-TCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHH-HHHHH
T ss_pred c--CC-CCCeEEEEeCCHHHHCCCcCCCeEEEcCHHHHHHHHHHhhcc-------CCcHHHHHHHHHHHHHhHh-hhhhc
Confidence 1 13 467899999999999999999999999999999999987752 1235687776655443321 11000
Q ss_pred hhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCc
Q psy14416 657 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 736 (1065)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~ 736 (1065)
.. ....++ + +..+++ .|.+.+|++++++.|+|.+..
T Consensus 357 ------------------~~-------~~~~~~-----~---~~~~~~-----------~l~~~l~~~~ivv~d~G~~~~ 392 (590)
T 1v5e_A 357 ------------------ET-------KEEGDL-----Q---FYQVYN-----------AINNHADEDAIYSIDVGNSTQ 392 (590)
T ss_dssp ------------------HT-------CCSSBC-----C---HHHHHH-----------HHHHHSCTTCEEEECSSHHHH
T ss_pred ------------------cc-------CCCCCc-----C---HHHHHH-----------HHHhhCCCCCEEEECCchHHH
Confidence 00 012235 6 778888 999999999999999998777
Q ss_pred ccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccc
Q psy14416 737 FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVES 816 (1065)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 816 (1065)
|..+++.. . -|.+ ++.
T Consensus 393 ~~~~~~~~-----~----~~~~---------------------------------------------~~~---------- 408 (590)
T 1v5e_A 393 TSIRHLHM-----T----PKNM---------------------------------------------WRT---------- 408 (590)
T ss_dssp GGGGTCCC-----C----TTSE---------------------------------------------EEC----------
T ss_pred HHHHhccc-----C----CCCe---------------------------------------------EEc----------
Confidence 75543321 0 0000 000
Q ss_pred cceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEE
Q psy14416 817 GEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 896 (1065)
Q Consensus 817 ~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v 896 (1065)
|+-.|+| |+++++++ |++++. |+++|
T Consensus 409 ----------------~~~~g~m----------------------------G~~l~~Ai--Gaala~--------~~~~v 434 (590)
T 1v5e_A 409 ----------------SPLFATM----------------------------GIAIPGGL--GAKNTY--------PDRQV 434 (590)
T ss_dssp ----------------CCSSCCT----------------------------TCHHHHHH--HHHHHC--------TTSCE
T ss_pred ----------------CCCCCcc----------------------------cChHHHHH--HHHHhC--------CCCeE
Confidence 1223444 88888877 888887 88899
Q ss_pred EEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCc
Q psy14416 897 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 976 (1065)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~ 976 (1065)
+ +++|||+| +|+.++++++ +++++|+++||+||+| |+...
T Consensus 435 v---------------------------------~i~GDG~~-~~~~~~L~ta-----~~~~l~~~ivv~NN~~-~~~~~ 474 (590)
T 1v5e_A 435 W---------------------------------NIIGDGAF-SMTYPDVVTN-----VRYNMPVINVVFSNTE-YAFIK 474 (590)
T ss_dssp E---------------------------------EEEEHHHH-HHHGGGHHHH-----HHTTCCCEEEEEECSS-CTTGG
T ss_pred E---------------------------------EEEechHH-hchHHHHHHH-----HHhCCCCEEEEEECCc-hHHHH
Confidence 9 99999999 9999999999 9999999999999987 33222
Q ss_pred hhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcC--CCCEEEEEEeCCCC
Q psy14416 977 EATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTT--TRPSLINILINPSA 1049 (1065)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~--~~~~li~~~~~~~~ 1049 (1065)
... .. .+ .. ......+++||.++|++||+++++|++.+||+++|+++++.. ++|+||||.+++++
T Consensus 475 ~~q-~~---~~-~~---~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~~~gp~liev~~~~~~ 541 (590)
T 1v5e_A 475 NKY-ED---TN-KN---LFGVDFTDVDYAKIAEAQGAKGFTVSRIEDMDRVMAEAVAANKAGHTVVIDCKITQDR 541 (590)
T ss_dssp GTT-SS---SC-CS---CCCCCCCCCCHHHHHHHTTSEEEEECBHHHHHHHHHHHHHHHHTTCCEEEEEECCSCC
T ss_pred HHH-HH---hc-CC---CccccCCCCCHHHHHHHcCCEEEEECCHHHHHHHHHHHHHhcCCCCCEEEEEEecccc
Confidence 110 00 00 11 111113579999999999999999999999999999998642 78999999999887
No 16
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=100.00 E-value=3.6e-74 Score=698.17 Aligned_cols=528 Identities=15% Similarity=0.132 Sum_probs=395.6
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
+++++++|++.|+++||+++||+||+++++|++++.+ .+|++|.++||++|+|||+||||+||||+||+||||||++|+
T Consensus 7 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~~AdGyAr~tG~pgv~~~TsGpG~~N~ 86 (556)
T 3hww_A 7 NRRWAAVILEALTRHGVRHICIAPGSRSTLLTLAAAENSAFIHHTHFDERGLGHLALGLAKVSKQPVAVIVTSGTAVANL 86 (556)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEECCCTTSHHHHHHHHHCTTCEEEECSCHHHHHHHHHHHHHHHCSCEEEEECSSHHHHTT
T ss_pred hhHHHHHHHHHHHHCCCCEEEEcCCCCcHHHHHHHhhCCCceEEEecCCcHHHHHHHHHHHhhCCCEEEEECCCcHHHhh
Confidence 5789999999999999999999999999999999965 579999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhh------HHHHHHHHHHHhhcCCCCE
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHL------IGQHVEKAVRLSTFGKPGV 418 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~------i~~~i~~A~~~A~~~~~GP 418 (1065)
++||++|+.+++|||+|||++|.++++++++|++||.++|+++|||++++.++++ +++.+++|+ .++||||
T Consensus 87 ~~gia~A~~d~vPll~itG~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~---~~~r~GP 163 (556)
T 3hww_A 87 YPALIEAGLTGEKLILLTADRPPELIDCGANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHAL---GTLHAGG 163 (556)
T ss_dssp HHHHHHHHHHCCCEEEEEEECCGGGSSSSCTTCCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHH---HSCCSSC
T ss_pred hHHHHHHHHhCCCeEEEeCCCCHHHhccCCCccccHHHHHhhheeEEEecCCCcccccHHHHHHHHHHHH---hcCCCCC
Confidence 9999999999999999999999999999999999999999999999999998864 788888887 3588999
Q ss_pred EEEecChhhhhh-ccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHH-HHHHHHH
Q psy14416 419 SYLDFPANLLAQ-RINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAEL-KQASRLI 496 (1065)
Q Consensus 419 V~L~iP~Dv~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v-~~~ae~L 496 (1065)
|||+||.|++.. +.+..... .+... ..+.+ ...+....++.+.+ ++++++|
T Consensus 164 V~i~iP~d~~~~~~~~~~~~~-~~~~~--------------------~~~~~------~~~~~~~~~~~~~~~~~~~~~l 216 (556)
T 3hww_A 164 VHINCPFAEPLYGEMDDTGLS-WQQRL--------------------GDWWQ------DDKPWLREAPRLESEKQRDWFF 216 (556)
T ss_dssp EEEEEECCSCCSCCCSSTTHH-HHHTT--------------------GGGGG------CCSCSSCCCCCCCCCCCTTHHH
T ss_pred EEEeCCcCCCCCCCccccccc-ccccc--------------------ccccc------cccccccccccccchhhhhhhh
Confidence 999999986433 11110000 00000 00000 00000000111111 2345567
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCC-CCCCCCCCCccccc-HHHHhhhcCCCEEEEeCCccccccc
Q psy14416 497 LEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPM-GKGVVPDAHPNCVS-AARTHALQNADLVLLLGARLNWILH 574 (1065)
Q Consensus 497 ~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~-gkg~v~~~hpl~lg-~~~~~al~~aDlVI~iG~~~~~~~~ 574 (1065)
.+||||+|++|.+ .+++.++|++|+|++|+||++|++ +|+.++++||+++| ...++++++||+||.+|++++++.+
T Consensus 217 ~~A~rPvIl~G~~--~~~a~~~l~~lae~~~~PV~~t~~~~~~~~~~~~~~~lg~~~~~~~~~~aDlvl~iG~~~~~~~~ 294 (556)
T 3hww_A 217 WRQKRGVVVAGRM--SAEEGKKVALWAQTLGWPLIGDVLSQTGQPLPCADLWLGNAKATSELQQAQIVVQLGSSLTGKRL 294 (556)
T ss_dssp HTTSCEEEEECBC--CHHHHHHHHHHHHHHTCCEEECTTTCSCCSSCCHHHHTTSHHHHHHHTTCSEEEEESBCCCCHHH
T ss_pred ccCCCeEEEECCC--ChHHHHHHHHHHHhcCCEEEEccCCCCCCCcCcHHHHhcCchhhhcccCCCEEEEcCCCcccHHH
Confidence 8999999999974 467889999999999999999986 78999999999998 4567788999999999999988776
Q ss_pred cCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccc
Q psy14416 575 FGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLP 654 (1065)
Q Consensus 575 ~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 654 (1065)
.+|...+.+ .++||||.|+.++++++.+++.+++|++.+|++|.+.. ...|.+++++.+++......+
T Consensus 295 ~~~~~~~~~-~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~l~~~~-----------~~~w~~~~~~~~~~~~~~~~~ 362 (556)
T 3hww_A 295 LQWQASCEP-EEYWIVDDIEGRLDPAHHRGRRLIANIADWLELHPAEK-----------RQPWCVEIPRLAEQAMQAVIA 362 (556)
T ss_dssp HHHHHHCCC-SEEEEEESSCSCCCTTCCSEEEEESCHHHHHHHSCCCC-----------CCCCCSSHHHHHHHHHHHHHT
T ss_pred HHHHhcCCC-CeEEEECCCCccCCCCCCceEEEEcCHHHHHHhccccc-----------chHHHHHHHHHHHHHHHHHhh
Confidence 666555544 48999999999999999999999999999999863321 123433333332222221110
Q ss_pred hhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCc
Q psy14416 655 VILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIY 734 (1065)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~ 734 (1065)
...++ + +..+++ .|.+.+|++++|+.++|.+
T Consensus 363 ------------------------------~~~~~-----~---~~~~~~-----------~l~~~l~~~~iv~~g~~~~ 393 (556)
T 3hww_A 363 ------------------------------RRDAF-----G---EAQLAH-----------RICDYLPEQGQLFVGNSLV 393 (556)
T ss_dssp ------------------------------TCCSS-----S---HHHHHH-----------TGGGTCCTTCEEEECSSHH
T ss_pred ------------------------------cccCc-----C---HHHHHH-----------HHHHhCCCCCeEEEeCCcH
Confidence 12245 6 778889 9999999999999887543
Q ss_pred CcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccc
Q psy14416 735 GGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIV 814 (1065)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 814 (1065)
.++..++ .. . + .+.
T Consensus 394 ~~~~~~~--------~~----------------------------~-------------~----~~~------------- 407 (556)
T 3hww_A 394 VRLIDAL--------SQ----------------------------L-------------P----AGY------------- 407 (556)
T ss_dssp HHHHHHH--------CC----------------------------C-------------C----TTC-------------
T ss_pred HHHHHHh--------cc----------------------------C-------------C----CCc-------------
Confidence 2221100 00 0 0 000
Q ss_pred cccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccE
Q psy14416 815 ESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVI 894 (1065)
Q Consensus 815 ~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~ 894 (1065)
.++.|+|-.|++ |. +++++ |++++ |++
T Consensus 408 -------------~~~~~~g~~g~~----------------------------G~-l~~A~--Gaa~a---------~~~ 434 (556)
T 3hww_A 408 -------------PVYSNRGASGID----------------------------GL-LSTAA--GVQRA---------SGK 434 (556)
T ss_dssp -------------CEEECCSSCCSS----------------------------SH-HHHHH--HHHHH---------HCC
T ss_pred -------------eEEecCcccccc----------------------------cH-HHHHH--HHHhc---------CCC
Confidence 112233334444 44 45555 66665 467
Q ss_pred EEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCc--cc
Q psy14416 895 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNG--IY 972 (1065)
Q Consensus 895 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g--~~ 972 (1065)
+|+ +++|||+| +|+.++|+++ +++++|+++||+||+| ++
T Consensus 435 ~vv---------------------------------~i~GDGsf-~~~~~eL~ta-----~~~~lpv~ivv~NN~~~~~~ 475 (556)
T 3hww_A 435 PTL---------------------------------AIVGDLSA-LYDLNALALL-----RQVSAPLVLIVVNNNGGQIF 475 (556)
T ss_dssp CEE---------------------------------EEEEHHHH-HHTGGGHHHH-----TTCSSCEEEEEEESCC----
T ss_pred cEE---------------------------------EEEccHHh-hhcchhhHhh-----cccCCCcEEEEEECCCCCcc
Confidence 899 99999999 9999999999 9999999999999987 44
Q ss_pred CCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 973 GGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 973 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
+.++... . .....+...+++||.++|++||++|++|++.+||+++|+++++. ++|+||||.++++++.+
T Consensus 476 ~~~~~~~--~--------~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~-~gp~liev~~~~~~~~~ 544 (556)
T 3hww_A 476 SLLPTPQ--S--------ERERFYLMPQNVHFEHAAAMFELKYHRPQNWQELETAFADAWRT-PTTTVIEMVVNDTDGAQ 544 (556)
T ss_dssp -----------------------CCCCCCCCSHHHHHHTTCEEECCSSHHHHHHHHHHHTTS-SSEEEEEEECCSSHHHH
T ss_pred cCCCCcc--h--------hHHHhccCCCCCCHHHHHHHcCCcEEecCCHHHHHHHHHHHHhC-CCCEEEEEECCccccHH
Confidence 4333210 0 01122345678999999999999999999999999999999986 89999999999988765
Q ss_pred cch
Q psy14416 1053 PQN 1055 (1065)
Q Consensus 1053 ~~~ 1055 (1065)
..+
T Consensus 545 ~l~ 547 (556)
T 3hww_A 545 TLQ 547 (556)
T ss_dssp HHH
T ss_pred HHH
Confidence 533
No 17
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=100.00 E-value=2.4e-70 Score=666.61 Aligned_cols=525 Identities=16% Similarity=0.170 Sum_probs=412.2
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
+++++++|++.|+++||+++||+||+++++|++++.++ +|++|.++||++|+|||+||||+|| |+||++|||||++|+
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~ 80 (568)
T 2wvg_A 2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKG-AAAAVVTYSVGALSA 80 (568)
T ss_dssp CEEHHHHHHHHHHHTTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHH
T ss_pred CcCHHHHHHHHHHHcCCCEEEeCCCCccHHHHHHHhccCCceEeccCcHHHHHHHHHHHHHhhC-CeEEEEeCCCCHHHH
Confidence 46899999999999999999999999999999999764 7999999999999999999999999 999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCC--------CCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCC
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGG--------FQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKP 416 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga--------~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~ 416 (1065)
++||++|+.+++|||+|||++|.++++++. .|..||.++|+++|||++++++++++++.+++|++.|.+++
T Consensus 81 ~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~- 159 (568)
T 2wvg_A 81 FDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREK- 159 (568)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHHTTSCSCEEEECSGGGHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccchHHHHHHHHhhEeEEEEeCCHHHHHHHHHHHHHHHHhCC-
Confidence 999999999999999999999998876653 24458999999999999999999999999999999999876
Q ss_pred CEEEEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHH
Q psy14416 417 GVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLI 496 (1065)
Q Consensus 417 GPV~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L 496 (1065)
|||||+||.|++..+.+..... +.. .......+.++.+.+++++++|
T Consensus 160 GPV~l~iP~dv~~~~~~~~~~~--~~~-------------------------------~~~~~~~~~~~~~~i~~~~~~l 206 (568)
T 2wvg_A 160 KPVYLEIACNIASMPCAAPGPA--SAL-------------------------------FNDEASDEASLNAAVEETLKFI 206 (568)
T ss_dssp CCEEEEEEGGGTTSEECEECCT--HHH-------------------------------HCCCCCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEechhHhcCcccCCCcc--ccc-------------------------------ccCCCCCccccHHHHHHHHHHH
Confidence 9999999999987654321100 000 0000111123457799999999
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH--------HHHhhhcCCCEEEEeCCc
Q psy14416 497 LEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLGAR 568 (1065)
Q Consensus 497 ~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~--------~~~~al~~aDlVI~iG~~ 568 (1065)
+++|||+|++|.++.++++.+++++|+|++|+||++++++||.++++||+++|. ..++++++||+||.+|++
T Consensus 207 ~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~ 286 (568)
T 2wvg_A 207 ANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPV 286 (568)
T ss_dssp TTCCCEEEEECTTTTTTTCHHHHHHHHHHHCCEEEEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHHHHHCSEEEEESCC
T ss_pred HhCCCCEEEECccccccchHHHHHHHHHHhCCCEEEchhcCccCCCCCCceeccccCCcCCHHHHHHHHhCCEEEEECCC
Confidence 999999999999998888889999999999999999999999999999998773 245678899999999999
Q ss_pred cccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhh
Q psy14416 569 LNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 648 (1065)
Q Consensus 569 ~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~ 648 (1065)
++++.+.+|.. +.++.++||||.|+..+++.+..+ .+++.+|++|.+.++. ....|. .|.+..+
T Consensus 287 ~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~----~~~~~~l~~L~~~l~~--------~~~~~~-~~~~~~~-- 350 (568)
T 2wvg_A 287 FNDYSTTGWTD-IPDPKKLVLAEPRSVVVNGIRFPS----VHLKDYLTRLAQKVSK--------KTGALD-FFKSLNA-- 350 (568)
T ss_dssp CBTTTTTTTTC-CCCTTTEEEECSSEEEETTEEEES----CCHHHHHHHHHHHCCC--------CCHHHH-HHHHTTC--
T ss_pred ccccccccccc-CCCCCcEEEEeCChhhcCCeecCC----CCHHHHHHHHHHhccc--------cccchh-hhhhhhh--
Confidence 99887766654 335678999999999888654433 4579999999887751 124563 2332110
Q ss_pred hhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEE
Q psy14416 649 RQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 728 (1065)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv 728 (1065)
....... . .....++ + +..+++ .|.+.+|++++++
T Consensus 351 ~~~~~~~-------------------~-------~~~~~~~-----~---~~~~~~-----------~l~~~l~~~~iv~ 385 (568)
T 2wvg_A 351 GELKKAA-------------------P-------ADPSAPL-----V---NAEIAR-----------QVEALLTPNTTVI 385 (568)
T ss_dssp CSCCCCC-------------------C-------CCTTSBC-----C---HHHHHH-----------HHHTTCCTTEEEE
T ss_pred hcccccc-------------------c-------CCCCCcc-----C---HHHHHH-----------HHHHhCCCCCEEE
Confidence 0110000 0 0112345 6 778888 9999999999999
Q ss_pred ECCCCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcc
Q psy14416 729 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDET 808 (1065)
Q Consensus 729 ~d~G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 808 (1065)
.|.|.+. |..+++.. + .+ ..++
T Consensus 386 ~d~G~~~-~~~~~~~~-----------~------------------------------------~~-------~~~~--- 407 (568)
T 2wvg_A 386 AETGDSW-FNAQRMKL-----------P------------------------------------NG-------ARVE--- 407 (568)
T ss_dssp ECSSHHH-HHHHTCCC-----------C------------------------------------TT-------CEEE---
T ss_pred EcCcHHH-HHHhhccc-----------C------------------------------------CC-------CeEE---
Confidence 9998643 32211110 0 00 0000
Q ss_pred cccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccc
Q psy14416 809 TYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVT 888 (1065)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~ 888 (1065)
.+|.+|+| |+++++++ |++++.
T Consensus 408 -----------------------~~~~~g~~----------------------------G~~l~~A~--G~ala~----- 429 (568)
T 2wvg_A 408 -----------------------YEMQWGHI----------------------------GWSVPAAF--GYAVGA----- 429 (568)
T ss_dssp -----------------------CCTTTCCT----------------------------TTHHHHHH--HHHHHC-----
T ss_pred -----------------------eCCCcchh----------------------------hhHHHHHH--HHHHhC-----
Confidence 02224444 88888887 889988
Q ss_pred cccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcC
Q psy14416 889 TVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNN 968 (1065)
Q Consensus 889 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn 968 (1065)
|+++|+ +++|||+| +|+.++++++ +++++|+++||+||
T Consensus 430 ---~~~~vv---------------------------------~i~GDGs~-~~~~~el~ta-----~~~~l~~~ivv~NN 467 (568)
T 2wvg_A 430 ---PERRNI---------------------------------LMVGDGSF-QLTAQEVAQM-----VRLKLPVIIFLINN 467 (568)
T ss_dssp ---TTSEEE---------------------------------EEEEHHHH-HHHGGGHHHH-----HHTTCCCEEEEEEC
T ss_pred ---CCCcEE---------------------------------EEEcChhH-hccHHHHHHH-----HHcCCCcEEEEEEC
Confidence 889999 99999999 9999999999 99999999999999
Q ss_pred CcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCC---------CeEeeCCHHHHHHHHHHHHhcCCCCE
Q psy14416 969 NGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGH---------DGYLCTTVPQIKQAMKKCLQTTTRPS 1039 (1065)
Q Consensus 969 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---------~~~~~~~~~~l~~~~~~~~~~~~~~~ 1039 (1065)
+| |+.+.. ... ..+...+++||.++|++||+ ++++|++.+||+++++++++..++|+
T Consensus 468 ~~-~~~~~~------~~~-------~~~~~~~~~d~~~~a~a~G~~~~~~~~~~~~~~v~~~~el~~al~~a~~~~~gp~ 533 (568)
T 2wvg_A 468 YG-YTIEVM------IHD-------GPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALANTDGPT 533 (568)
T ss_dssp SS-CHHHHT------TSC-------CGGGCCCCCCHHHHHHHHHCTTSSSCCCCEEEEESBHHHHHHHHHHHHHCCSSCE
T ss_pred Cc-ceEeee------ecc-------CCCcCCCCCCHHHHHHHhCCCcccccCCcceEEeCCHHHHHHHHHHHHhcCCCcE
Confidence 98 221110 000 11233467999999999999 89999999999999999987437999
Q ss_pred EEEEEeCCCCCCCcchhhh
Q psy14416 1040 LINILINPSADRKPQNFSW 1058 (1065)
Q Consensus 1040 li~~~~~~~~~~~~~~~~~ 1058 (1065)
||||.+++++..++....|
T Consensus 534 liev~~~~~~~~~~~~~~~ 552 (568)
T 2wvg_A 534 LIECFIGREDCTEELVKWG 552 (568)
T ss_dssp EEEEECCTTCCCHHHHHHH
T ss_pred EEEEEcCccccCHHHHHHH
Confidence 9999999998876644444
No 18
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=100.00 E-value=6.6e-70 Score=662.50 Aligned_cols=521 Identities=15% Similarity=0.172 Sum_probs=410.7
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
+++++++|++.|+++||+++||+||+++++|++++.++ +|++|.++||++|+|||+||+|+|| |+||++|||||++|+
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~v~~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~ 80 (566)
T 2vbi_A 2 TYTVGMYLAERLVQIGLKHHFAVAGDYNLVLLDQLLLNKDMKQIYCCNELNCGFSAEGYARSNG-AAAAVVTFSVGAISA 80 (566)
T ss_dssp CCBHHHHHHHHHHHHTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHH
T ss_pred ccCHHHHHHHHHHHcCCCEEEeCCCCccHHHHHHHhcCCCCeEEeeCcHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHH
Confidence 46899999999999999999999999999999999764 7999999999999999999999999 999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCC--------CCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCC
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGG--------FQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKP 416 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga--------~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~ 416 (1065)
++||++|+.+++|||+|||++|.+.++++. .|..||.++|+++|||++++++++++++.+++|++.|.+++
T Consensus 81 ~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~- 159 (566)
T 2vbi_A 81 MNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEMARQVTCAAESITDAHSAPAKIDHVIRTALRER- 159 (566)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHHHHhhhEeEEEEeCCHHHHHHHHHHHHHHHHhCC-
Confidence 999999999999999999999998887654 24458999999999999999999999999999999999876
Q ss_pred CEEEEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHH
Q psy14416 417 GVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLI 496 (1065)
Q Consensus 417 GPV~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L 496 (1065)
|||||+||.|++..+.+..... +... ......+.++.+.+++++++|
T Consensus 160 GPV~l~iP~d~~~~~~~~~~~~--~~~~-------------------------------~~~~~~~~~~~~~i~~~~~~l 206 (566)
T 2vbi_A 160 KPAYLDIACNIASEPCVRPGPV--SSLL-------------------------------SEPEIDHTSLKAAVDATVALL 206 (566)
T ss_dssp CCEEEEEETTTTTSBCCEECCC--SCSC-------------------------------CCBCCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEechhhcCCeecCCCCC--cccC-------------------------------CCCCCCcchHHHHHHHHHHHH
Confidence 9999999999987665321100 0000 000011123457799999999
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH--------HHHhhhcCCCEEEEeCCc
Q psy14416 497 LEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLGAR 568 (1065)
Q Consensus 497 ~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~--------~~~~al~~aDlVI~iG~~ 568 (1065)
+++|||+|++|.++.++++.+++++|+|++|+||++++++|+.++++||+++|. ..++++++||+||.+|++
T Consensus 207 ~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~ 286 (566)
T 2vbi_A 207 EKSASPVMLLGSKLRAANALAATETLADKLQCAVTIMAAAKGFFPEDHAGFRGLYWGEVSNPGVQELVETSDALLCIAPV 286 (566)
T ss_dssp HTCSCEEEEECTTTTTTTCHHHHHHHHHHHCCEEEEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHHHHTCSEEEEESCC
T ss_pred HhCCCCEEEECcCccccchHHHHHHHHHHhCCCEEEccccCccCCCCCccccccccCccCCHHHHHHHHhCCEEEEECCC
Confidence 999999999999998888899999999999999999999999999999998773 345678899999999999
Q ss_pred cccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhh
Q psy14416 569 LNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 648 (1065)
Q Consensus 569 ~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~ 648 (1065)
+.++.+.+|.. +.++.++||||.|+..+++.+..++ +++++|++|.+.++. ....|. .|
T Consensus 287 ~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~----~~~~~l~~L~~~l~~--------~~~~~~-~~------- 345 (566)
T 2vbi_A 287 FNDYSTVGWSA-WPKGPNVILAEPDRVTVDGRAYDGF----TLRAFLQALAEKAPA--------RPASAQ-KS------- 345 (566)
T ss_dssp CBTTTTTTTTS-CCCSTTEEEECSSEEEETTEEEESS----CHHHHHHHHHHHCCC--------CCHHHH-TS-------
T ss_pred ccccccccccc-cCCCCcEEEEeCChheeCCcccCCc----cHHHHHHHHHHhccc--------cccchh-hh-------
Confidence 99988777754 3356789999999998887554443 578999999887651 123341 11
Q ss_pred hhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEE
Q psy14416 649 RQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 728 (1065)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv 728 (1065)
.+..+.. .+ . ....++ + +..+++ .|.+.+|++.+++
T Consensus 346 ~~~~~~~----------~~--------------~-~~~~~l-----~---~~~~~~-----------~l~~~l~~~~iv~ 381 (566)
T 2vbi_A 346 SVPTCSL----------TA--------------T-SDEAGL-----T---NDEIVR-----------HINALLTSNTTLV 381 (566)
T ss_dssp CCCCCCC----------CC--------------C-CTTSCC-----C---HHHHHH-----------HHHHHCCTTEEEE
T ss_pred hhhhhcc----------CC--------------C-CCCCcc-----C---HHHHHH-----------HHHHhcCCCCEEE
Confidence 1111100 00 0 012245 6 778888 9999999999999
Q ss_pred ECCCCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcc
Q psy14416 729 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDET 808 (1065)
Q Consensus 729 ~d~G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 808 (1065)
.|.|.+. |..+++.. + .+ +.+
T Consensus 382 ~d~G~~~-~~~~~~~~-----------~------------------------------------~~-------~~~---- 402 (566)
T 2vbi_A 382 AETGDSW-FNAMRMTL-----------P------------------------------------RG-------ARV---- 402 (566)
T ss_dssp ECSSHHH-HHHHTCCC-----------C------------------------------------TT-------CEE----
T ss_pred ECCchHH-HhhhheEC-----------C------------------------------------CC-------CEE----
Confidence 9998642 32211110 0 00 000
Q ss_pred cccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccc
Q psy14416 809 TYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVT 888 (1065)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~ 888 (1065)
+ .+|.+|+| |+++++++ |++++.
T Consensus 403 ---------------------~-~~~~~g~m----------------------------G~~l~~A~--G~ala~----- 425 (566)
T 2vbi_A 403 ---------------------E-LEMQWGHI----------------------------GWSVPSAF--GNAMGS----- 425 (566)
T ss_dssp ---------------------E-CCTTTCCT----------------------------TTHHHHHH--HHHHTC-----
T ss_pred ---------------------E-ecCcccch----------------------------hhHHHHHH--HHHHhC-----
Confidence 0 02224444 88888887 888887
Q ss_pred cccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcC
Q psy14416 889 TVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNN 968 (1065)
Q Consensus 889 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn 968 (1065)
|+++|+ +++|||+| +|+.++++++ .++++|+++||+||
T Consensus 426 ---~~~~vv---------------------------------~~~GDG~~-~~~~~eL~ta-----~~~~l~~~ivv~nN 463 (566)
T 2vbi_A 426 ---QDRQHV---------------------------------VMVGDGSF-QLTAQEVAQM-----VRYELPVIIFLINN 463 (566)
T ss_dssp ---TTSEEE---------------------------------EEEEHHHH-HHHGGGHHHH-----HHTTCCCEEEEEEC
T ss_pred ---CCCcEE---------------------------------EEEcchHH-HhhHHHHHHH-----HHhCCCcEEEEEEC
Confidence 889999 99999999 9999999999 99999999999999
Q ss_pred CcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCC-----CeEeeCCHHHHHHHHHHHHhcCCCCEEEEE
Q psy14416 969 NGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGH-----DGYLCTTVPQIKQAMKKCLQTTTRPSLINI 1043 (1065)
Q Consensus 969 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~l~~~~~~~~~~~~~~~li~~ 1043 (1065)
+| |+.... ... ..+...+.+||.++|++||+ ++++|++.+||+++|+++++..++|+||||
T Consensus 464 ~~-~~~~~~------~~~-------~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v~~~~el~~al~~a~~~~~gp~liev 529 (566)
T 2vbi_A 464 RG-YVIEIA------IHD-------GPYNYIKNWDYAGLMEVFNAGEGHGLGLKATTPKELTEAIARAKANTRGPTLIEC 529 (566)
T ss_dssp SS-CHHHHT------TSC-------CGGGCCCCCCTTTHHHHHHTTTCCCEEEEECSHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred Cc-ceEEEe------ecc-------CCccCCCCCCHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHHHHhcCCCcEEEEE
Confidence 88 221110 000 11233467999999999999 999999999999999999874379999999
Q ss_pred EeCCCCCCCcchhhh
Q psy14416 1044 LINPSADRKPQNFSW 1058 (1065)
Q Consensus 1044 ~~~~~~~~~~~~~~~ 1058 (1065)
.+++++..++....|
T Consensus 530 ~~~~~~~~~~~~~~~ 544 (566)
T 2vbi_A 530 QIDRTDCTDMLVQWG 544 (566)
T ss_dssp ECCTTCCCHHHHHHH
T ss_pred EeCcccCcHHHHHHH
Confidence 999998876644433
No 19
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=100.00 E-value=9.4e-71 Score=669.71 Aligned_cols=525 Identities=18% Similarity=0.225 Sum_probs=406.8
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
+.++++++|++.|+++||+++||+||+++++|++++.++ +|++|.++||++|+|||+||||+|| |+||++|+|||++|
T Consensus 2 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~v~~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N 80 (563)
T 2vk8_A 2 SEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKG-MSCIITTFGVGELS 80 (563)
T ss_dssp CEEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHGGGGSTTCEECCCSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHH
T ss_pred CccCHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHhhcCCceEEccCchHHHHHHHHHHHHhhC-CcEEEEcCCCcHHH
Confidence 357899999999999999999999999999999999765 7999999999999999999999999 99999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCC----------CCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhc
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHE----------GIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTF 413 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~----------g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~ 413 (1065)
+++||++|+.+++|||+|||++|.+++ +.+++| ||.++|+++|||+.++++++++++.+++|++.|.+
T Consensus 81 ~~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~~q--~~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~ 158 (563)
T 2vk8_A 81 ALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFT--VFHRMSANISETTAMITDIATAPAEIDRCIRTTYV 158 (563)
T ss_dssp HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSSCSS--HHHHHHHTTCSEEEECCCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCcchH--HHHHHhhhhEEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998653 567888 58999999999999999999999999999999997
Q ss_pred CCCCEEEEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHH
Q psy14416 414 GKPGVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQAS 493 (1065)
Q Consensus 414 ~~~GPV~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~a 493 (1065)
.+ |||||+||.|++..+.+..... .+... ......+.++.+.+++++
T Consensus 159 ~~-GPV~l~iP~d~~~~~~~~~~~~-~~~~~-------------------------------~~~~~~~~~~~~~i~~~~ 205 (563)
T 2vk8_A 159 TQ-RPVYLGLPANLVDLNVPAKLLQ-TPIDM-------------------------------SLKPNDAESEKEVIDTIL 205 (563)
T ss_dssp HT-SCEEEEEETTGGGSEEEGGGGG-SCCCC-------------------------------SCCCCCHHHHHHHHHHHH
T ss_pred CC-CCEEEEechhhhcCccCCccCc-Ccccc-------------------------------cCCCCCchhhHHHHHHHH
Confidence 75 9999999999987655422100 00000 000011122356789999
Q ss_pred HHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH--------HHHhhhcCCCEEEEe
Q psy14416 494 RLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------ARTHALQNADLVLLL 565 (1065)
Q Consensus 494 e~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~--------~~~~al~~aDlVI~i 565 (1065)
++|++||||+|++|.++.++++.+++++|+|++|+||++++++||.+|++||+++|. ..++++++||+||.+
T Consensus 206 ~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~g~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~i 285 (563)
T 2vk8_A 206 VLDKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSV 285 (563)
T ss_dssp HHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHCCCEEECTTTTTSSCTTSTTEEEECCGGGSCHHHHHHHHTCSEEEEE
T ss_pred HHHHhCCCCEEEECcCccccchHHHHHHHHHHhCCCEEECcccCccCCCCCCcccccccCccCCHHHHHHHHhCCEEEEE
Confidence 999999999999999987778889999999999999999999999999999998763 346778999999999
Q ss_pred CCccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHH
Q psy14416 566 GARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKC 645 (1065)
Q Consensus 566 G~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~ 645 (1065)
|++++++.+.+|.. +.++.++||||.|+..+++.+..++ +++.+|++|.+.+... .| .|.+ +
T Consensus 286 G~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~----~~~~~l~~L~~~l~~~--~~------~~~~-~---- 347 (563)
T 2vk8_A 286 GALLSDFNTGSFSY-SYKTKNIVEFHSDHMKIRNATFPGV----QMKFVLQKLLTTIADA--AK------GYKP-V---- 347 (563)
T ss_dssp SCCCCTTTTTTTCC-CCCCSCEEEECSSEEEETTEEEETC----CHHHHHHHHHHHHHHH--TT------TCCC-C----
T ss_pred CCCCcccccccccc-CCCCCeEEEEeCCceEECCcccCCc----CHHHHHHHHHHhhccc--cc------hhhh-h----
Confidence 99999887766643 3346789999999999888765544 5689999998776521 00 0110 0
Q ss_pred HhhhhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcE
Q psy14416 646 QTNRQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVIL 725 (1065)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ 725 (1065)
+.+++..... +. ....++ + +..+++ .|.+.+|+++
T Consensus 348 ~~~~~~~~~~------------------~~--------~~~~~~-----~---~~~~~~-----------~l~~~l~~~~ 382 (563)
T 2vk8_A 348 AVPARTPANA------------------AV--------PASTPL-----K---QEWMWN-----------QLGNFLQEGD 382 (563)
T ss_dssp CCCCCCCCCC------------------CC--------CTTCBC-----C---HHHHHH-----------HHTTTCCTTC
T ss_pred hhhhhccccc------------------CC--------CCCCCc-----C---HHHHHH-----------HHHHhCCCCC
Confidence 0000000000 00 112345 6 778888 9999999999
Q ss_pred EEEECCCCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCccccc
Q psy14416 726 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 805 (1065)
Q Consensus 726 ilv~d~G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (1065)
+++.|.|++. |..+++.. + .+ +.
T Consensus 383 iv~~d~G~~~-~~~~~~~~-----------~------------------------------------~~-------~~-- 405 (563)
T 2vk8_A 383 VVIAETGTSA-FGINQTTF-----------P------------------------------------NN-------TY-- 405 (563)
T ss_dssp EEEECTTHHH-HHGGGSCC-----------C------------------------------------SS-------CE--
T ss_pred EEEECCchHH-HHHhhcCc-----------C------------------------------------CC-------Ce--
Confidence 9999998653 21111100 0 00 00
Q ss_pred CcccccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheecc
Q psy14416 806 DETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESG 885 (1065)
Q Consensus 806 ~~g~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~ 885 (1065)
++. ||-+|+| |+++++++ |++++.
T Consensus 406 -----------------------~~~-~~~~g~m----------------------------G~~l~~A~--Gaala~-- 429 (563)
T 2vk8_A 406 -----------------------GIS-QVLWGSI----------------------------GFTTGATL--GAAFAA-- 429 (563)
T ss_dssp -----------------------EEC-CTTTCCT----------------------------THHHHHHH--HHHHHH--
T ss_pred -----------------------EEc-ccchhhh----------------------------hhHHHHHH--HHHHhC--
Confidence 000 2224555 88888887 888887
Q ss_pred cccccccc----EEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCE
Q psy14416 886 EVTTVLPV----ILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPV 961 (1065)
Q Consensus 886 ~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~ 961 (1065)
|+ ++|+ +++|||+| +|+.++++++ +++++|+
T Consensus 430 ------~~~~~~~~vv---------------------------------~~~GDG~~-~~~~~el~ta-----~~~~l~~ 464 (563)
T 2vk8_A 430 ------EEIDPKKRVI---------------------------------LFIGDGSL-QLTVQEISTM-----IRWGLKP 464 (563)
T ss_dssp ------HHHCTTCCEE---------------------------------EEEEHHHH-HHHGGGHHHH-----HHTTCCC
T ss_pred ------cccCCCCCEE---------------------------------EEEcchHh-hccHHHHHHH-----HHcCCCc
Confidence 55 8899 99999999 9999999999 9999999
Q ss_pred EEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCC---eEeeCCHHHHHHHHH-HHHhcCCC
Q psy14416 962 ILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHD---GYLCTTVPQIKQAMK-KCLQTTTR 1037 (1065)
Q Consensus 962 ~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~l~~~~~-~~~~~~~~ 1037 (1065)
++||+||+|+ +... .. .+. . ..+...+.+||.++|++||++ +++|++.+||+++++ ++++..++
T Consensus 465 ~ivv~nN~~~-~~~~-----~~--~~~-~---~~~~~~~~~d~~~~a~a~G~~~~~~~~v~~~~el~~al~~~a~~~~~~ 532 (563)
T 2vk8_A 465 YLFVLNNDGY-TIQK-----LI--HGP-K---AQYNEIQGWDHLSLLPTFGAKDYETHRVATTGEWDKLTQDKSFNDNSK 532 (563)
T ss_dssp EEEEEESSSC-HHHH-----HH--SCT-T---CGGGCCCCCCGGGHHHHTTCSSEEEEEECBHHHHHHHHTCTTTTSCSS
T ss_pred EEEEEECCcc-hhhh-----hh--hCC-C---CCcccCCCCCHHHHHHHhCCCCCcEEEecCHHHHHHHHHHHHHhCCCC
Confidence 9999999882 2111 00 011 0 011223679999999999999 999999999999999 88875347
Q ss_pred CEEEEEEeCCCCCCCcchhhh
Q psy14416 1038 PSLINILINPSADRKPQNFSW 1058 (1065)
Q Consensus 1038 ~~li~~~~~~~~~~~~~~~~~ 1058 (1065)
|+||||.+++++..+..+..|
T Consensus 533 p~liev~~~~~~~~~~~~~~~ 553 (563)
T 2vk8_A 533 IRMIEVMLPVFDAPQNLVEQA 553 (563)
T ss_dssp EEEEEEECCTTCCCHHHHHHH
T ss_pred cEEEEEEeCccccCHHHHHHH
Confidence 999999999998876654444
No 20
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=100.00 E-value=2e-70 Score=666.46 Aligned_cols=516 Identities=17% Similarity=0.179 Sum_probs=402.6
Q ss_pred cccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCC-ceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccc
Q psy14416 263 YDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGL 341 (1065)
Q Consensus 263 ~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~-i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~ 341 (1065)
.+..++++++|++.|+++||+++||+||+++++|++++.+++ +++|.++||++|+|||+||||+||||+||+||+|||+
T Consensus 17 ~~~~~~~a~~lv~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~~~i~~~~E~~Aa~~A~GyAr~tgkp~v~~~TsGpG~ 96 (565)
T 2nxw_A 17 RGSHMKLAEALLRALKDRGAQAMFGIPGDFALPFFKVAEETQILPLHTLSHEPAVGFAADAAARYSSTLGVAAVTYGAGA 96 (565)
T ss_dssp CSCCCBHHHHHHHHHHHTTCCCEEECCCGGGHHHHHHHHHHCSSCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTTHHH
T ss_pred CCCCcCHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHHHHhCCCeEEEECCCCCH
Confidence 445689999999999999999999999999999999997654 7899999999999999999999999999999999999
Q ss_pred cccccccccccccCcceEeecCCCccCCCCCCCC-----CccC-hhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCC
Q psy14416 342 LHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGF-----QECP-QVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGK 415 (1065)
Q Consensus 342 ~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~-----Q~id-Q~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~ 415 (1065)
+|+++||++|+.+++|||+|||+++....+.+++ |++| |.++|+++|||++++++++++++.+++|++.|.+.
T Consensus 97 ~N~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~- 175 (565)
T 2nxw_A 97 FNMVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKEITVAQARLDDPAKAPAEIARVLGAARAQ- 175 (565)
T ss_dssp HTTHHHHHHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHTTSCSCEEECCCTTTHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHhhheEEEEeCCHHHHHHHHHHHHHHHHhC-
Confidence 9999999999999999999999999999888774 7898 99999999999999999999999999999999875
Q ss_pred CCEEEEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHH
Q psy14416 416 PGVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRL 495 (1065)
Q Consensus 416 ~GPV~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~ 495 (1065)
+|||||+||.|++.++++... . . ......+.+.++.+++++++
T Consensus 176 ~GPV~l~iP~Dv~~~~~~~~~-~---~---------------------------------~~~~~~~~~~~~~i~~~~~~ 218 (565)
T 2nxw_A 176 SRPVYLEIPRNMVNAEVEPVG-D---D---------------------------------PAWPVDRDALAACADEVLAA 218 (565)
T ss_dssp TCCEEEEEEGGGTTCBCCCCC-C---C---------------------------------CCCCCCHHHHHHHHHHHHHH
T ss_pred CCCEEEECChhhhcCcCCCcc-c---c---------------------------------CCCCCCchhhHHHHHHHHHH
Confidence 699999999999877654211 0 0 00001111234678999999
Q ss_pred HHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH--------HHHhhhcCCCEEEEeCC
Q psy14416 496 ILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLGA 567 (1065)
Q Consensus 496 L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~--------~~~~al~~aDlVI~iG~ 567 (1065)
|+++|||+|++|.++.++++.+++++|+|++|+||++++++|+.++++||+++|. ..++++++||+||.+|+
T Consensus 219 l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~ 298 (565)
T 2nxw_A 219 MRSATSPVLMVCVEVRRYGLEAKVAELAQRLGVPVVTTFMGRGLLADAPTPPLGTYIGVAGDAEITRLVEESDGLFLLGA 298 (565)
T ss_dssp HHHCSSEEEEECHHHHHTTCHHHHHHHHHHHCSCEEECGGGTTTTTTSSSCCSCBCCGGGSCHHHHHHHHTCSEEEEESC
T ss_pred HHcCCCCEEEECCCcchhchHHHHHHHHHHhCCCEEECcccCccCCCCCCccccccCcccCCHHHHHHHHhCCEEEEECC
Confidence 9999999999999887777789999999999999999999999999999998873 34567889999999999
Q ss_pred ccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHh
Q psy14416 568 RLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQT 647 (1065)
Q Consensus 568 ~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~ 647 (1065)
++.++.+..|...+. ..++|++|.|+..+++.+..++ .+..++++|.+.++.. ...|...
T Consensus 299 ~~~~~~~~~~~~~~~-~~~~i~i~~d~~~~~~~~~~~~----~~~~~l~~L~~~l~~~--------~~~w~~~------- 358 (565)
T 2nxw_A 299 ILSDTNFAVSQRKID-LRKTIHAFDRAVTLGYHTYADI----PLAGLVDALLERLPPS--------DRTTRGK------- 358 (565)
T ss_dssp CBCSSTTSBCTTTSC-GGGEEEEETTEEEETTEEEESC----CHHHHHHHHHHTSCCC--------CCCCCCS-------
T ss_pred CccccccccccccCC-CCcEEEEeCCceeeCCcccCCc----cHHHHHHHHHHhcccc--------chhhhhh-------
Confidence 998877665654333 4589999999988876544333 4578999988776521 1223210
Q ss_pred hhhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCC--cE
Q psy14416 648 NRQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPV--IL 725 (1065)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~--d~ 725 (1065)
........+ . ....++ + +..++. .|.+.+|+ ++
T Consensus 359 ~~~~~~~~~------------------~--------~~~~~l-----~---~~~v~~-----------~l~~~l~~~~~~ 393 (565)
T 2nxw_A 359 EPHAYPTGL------------------Q--------ADGEPI-----A---PMDIAR-----------AVNDRVRAGQEP 393 (565)
T ss_dssp CSSCCCCCC------------------C--------CSSSBC-----C---HHHHHH-----------HHHHHHHTTCCC
T ss_pred hhhhccccc------------------c--------CCCCcc-----C---HHHHHH-----------HHHHhcccccCC
Confidence 000000000 0 012345 6 778888 99999999 99
Q ss_pred EE-EECCCCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccc
Q psy14416 726 VI-VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 804 (1065)
Q Consensus 726 il-v~d~G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1065)
+| +.|.|++. |..+++ . |. .+
T Consensus 394 iv~~~d~G~~~-~~~~~~--------~----~~---------------------------------------------~~ 415 (565)
T 2nxw_A 394 LLIAADMGDCL-FTAMDM--------I----DA---------------------------------------------GL 415 (565)
T ss_dssp CEEEECSSHHH-HHHTTS--------C----CS---------------------------------------------CE
T ss_pred EEEEecchHHH-HHHHhC--------C----Cc---------------------------------------------EE
Confidence 98 89988643 211000 0 00 00
Q ss_pred cCcccccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheec
Q psy14416 805 FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVES 884 (1065)
Q Consensus 805 ~~~g~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~ 884 (1065)
+ .+|.+|+| |+++++++ |++++.
T Consensus 416 ~--------------------------~~~~~g~m----------------------------G~~l~~A~--G~ala~- 438 (565)
T 2nxw_A 416 M--------------------------APGYYAGM----------------------------GFGVPAGI--GAQCVS- 438 (565)
T ss_dssp E--------------------------CCTTTCCT----------------------------TCHHHHHH--HHHHHT-
T ss_pred E--------------------------ccCccccc----------------------------cccchHHH--HHHHhC-
Confidence 0 02334555 88888876 888887
Q ss_pred cccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEE
Q psy14416 885 GEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 964 (1065)
Q Consensus 885 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 964 (1065)
|+++|+ +++|||+| +|+.++++++ .++++|++||
T Consensus 439 -------~~~~vv---------------------------------~i~GDG~~-~~~~~~l~ta-----~~~~l~~~iv 472 (565)
T 2nxw_A 439 -------GGKRIL---------------------------------TVVGDGAF-QMTGWELGNC-----RRLGIDPIVI 472 (565)
T ss_dssp -------TTCCEE---------------------------------EEEEHHHH-HHHGGGGGGH-----HHHTCCCEEE
T ss_pred -------CCCcEE---------------------------------EEEechHH-HhhHHHHHHH-----HHhCCCCEEE
Confidence 888999 99999999 8999999999 9999999999
Q ss_pred EEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCE-EEEE
Q psy14416 965 IVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPS-LINI 1043 (1065)
Q Consensus 965 v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~-li~~ 1043 (1065)
|+||+| |+.++.. ...+ .+...+.+||.++|++||+++++|++.+||+++|+++++. ++|. ||||
T Consensus 473 v~nN~~-~~~~~~~-----~~~~-------~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~-~gp~~liev 538 (565)
T 2nxw_A 473 LFNNAS-WEMLRTF-----QPES-------AFNDLDDWRFADMAAGMGGDGVRVRTRAELKAALDKAFAT-RGRFQLIEA 538 (565)
T ss_dssp EEECSB-CHHHHHH-----CTTC-------GGGBCCCCCHHHHTGGGTSEEEEECBHHHHHHHHHHHHHC-CSSCEEEEE
T ss_pred EEECCC-CcEEeee-----cccC-------CCCcCCCCCHHHHHHHcCCCEEEeCCHHHHHHHHHHHHhc-CCCeEEEEE
Confidence 999998 3322211 0011 1223467899999999999999999999999999999986 7887 9999
Q ss_pred EeCCCCCCCcchh
Q psy14416 1044 LINPSADRKPQNF 1056 (1065)
Q Consensus 1044 ~~~~~~~~~~~~~ 1056 (1065)
.+++++..+..+.
T Consensus 539 ~~~~~~~~~~~~~ 551 (565)
T 2nxw_A 539 MIPRGVLSDTLAR 551 (565)
T ss_dssp ECCTTCCCHHHHH
T ss_pred EcccccCCHHHHH
Confidence 9999888665333
No 21
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=100.00 E-value=1.4e-68 Score=649.14 Aligned_cols=517 Identities=16% Similarity=0.160 Sum_probs=403.4
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
.++++++|++.|+++||+++||+||+++++|++++.+. +|++|.++||++|+|||+||||+|| |+||++|+|||++|+
T Consensus 4 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg-~~v~~~tsGpG~~N~ 82 (552)
T 1ovm_A 4 PYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKG-FAALLTTFGVGELSA 82 (552)
T ss_dssp CCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHT
T ss_pred ccCHHHHHHHHHHHcCCCEEEECCChhHHHHHHHHhcCCCceEEeeCcHHHHHHHHHHHHHhhC-CcEEEEccCCcHHHH
Confidence 47899999999999999999999999999999999764 7999999999999999999999999 999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCC----------CCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcC
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHE----------GIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFG 414 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~----------g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~ 414 (1065)
++||++|+.+++|||+|||++|.+++ +.+++| ||.++|+++|||++++++ +++++.+++|++.|.++
T Consensus 83 ~~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~q--~~~~~~~~~tk~~~~v~~-~~~~~~i~~A~~~a~~~ 159 (552)
T 1ovm_A 83 MNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFR--HFYHMSEPITVAQAVLTE-QNACYEIDRVLTTMLRE 159 (552)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCS--HHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCEEEEECCCCHHHHhcccccccccCCCcHH--HHHHHHHhheeEEEEEcc-ccHHHHHHHHHHHHHhC
Confidence 99999999999999999999998653 445778 589999999999999999 99999999999999876
Q ss_pred CCCEEEEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHH
Q psy14416 415 KPGVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASR 494 (1065)
Q Consensus 415 ~~GPV~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae 494 (1065)
+ |||||+||.|++.++++.... +... ..+...+.++.+.++++++
T Consensus 160 ~-GPV~l~iP~d~~~~~~~~~~~---~~~~-------------------------------~~~~~~~~~~~~~i~~~~~ 204 (552)
T 1ovm_A 160 R-RPGYLMLPADVAKKAATPPVN---ALTH-------------------------------KQAHADSACLKAFRDAAEN 204 (552)
T ss_dssp T-CCEEEEEEHHHHHSBCCCCSS---CCCC-------------------------------CCCCCCHHHHHHHHHHHHH
T ss_pred C-CCEEEEeehhhccCccCCCcc---cccc-------------------------------cCCCCCccchHHHHHHHHH
Confidence 5 999999999997665432110 0000 0000111234567999999
Q ss_pred HHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH--------HHHhhhcCCCEEEEeC
Q psy14416 495 LILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLG 566 (1065)
Q Consensus 495 ~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~--------~~~~al~~aDlVI~iG 566 (1065)
+|+++|||+|++|.++.++++.+++++|+|++++||+++++|||.++++||+++|. ..++++++||+||.+|
T Consensus 205 ~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~iG 284 (552)
T 1ovm_A 205 KLAMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVG 284 (552)
T ss_dssp HHHTCSCEEEEECHHHHHTTCHHHHHHHHHHSCCEEEECGGGTTSSCTTSTTCCCCCCGGGSCHHHHHHHHTSSEEEEES
T ss_pred HHHhCCCCEEEECcCccccCHHHHHHHHHHHHCCCEEEccccCccCCCCCcCeecccCCCCCCHHHHHHHHhCCEEEEEC
Confidence 99999999999999987778889999999999999999999999999999999873 3567789999999999
Q ss_pred CccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHH
Q psy14416 567 ARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQ 646 (1065)
Q Consensus 567 ~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~ 646 (1065)
++++++.+.+|.. +.++.++||||.|+..+++.+..+ .+++.+|++|.+ +.... ..|.+.+++.
T Consensus 285 ~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~----~~~~~~l~~L~~-l~~~~--------~~~~~~~~~~-- 348 (552)
T 1ovm_A 285 TRFTDTLTAGFTH-QLTPAQTIEVQPHAARVGDVWFTG----IPMNQAIETLVE-LCKQH--------VHAGLMSSSS-- 348 (552)
T ss_dssp CCCCTTTTTTTCC-CCCTTTEEEECSSEEEETTEEEES----CCHHHHHHHHHH-HHHTS--------CCC---------
T ss_pred CCCCccccccccc-CCCCCeEEEEeCChheeCCcccCC----ccHHHHHHHHHh-Ccccc--------cchhhhhhhc--
Confidence 9999887766643 335678999999999888866544 356899999988 65211 2343222210
Q ss_pred hhhhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEE
Q psy14416 647 TNRQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 726 (1065)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~i 726 (1065)
... .. . ....++ + +..++. .|.+.+|++++
T Consensus 349 -~~~---~~-------------------~--------~~~~~~-----~---~~~~~~-----------~l~~~l~~~~i 378 (552)
T 1ovm_A 349 -GAI---PF-------------------P--------QPDGSL-----T---QENFWR-----------TLQTFIRPGDI 378 (552)
T ss_dssp --------------------------------------CCSBC-----C---HHHHHH-----------HHHHHCCTTCE
T ss_pred -ccc---cc-------------------C--------CCCCcc-----C---HHHHHH-----------HHHHhcCCCCE
Confidence 000 00 0 112245 6 778888 99999999999
Q ss_pred EEECCCCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccC
Q psy14416 727 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 806 (1065)
Q Consensus 727 lv~d~G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (1065)
++.|+|++. |..+++.. + .+ +.
T Consensus 379 vv~d~G~~~-~~~~~~~~-----------~------------------------------------~~-------~~--- 400 (552)
T 1ovm_A 379 ILADQGTSA-FGAIDLRL-----------P------------------------------------AD-------VN--- 400 (552)
T ss_dssp EEECTTHHH-HHHTTCCC-----------C------------------------------------SS-------CE---
T ss_pred EEECCchHH-HHHHhccc-----------C------------------------------------CC-------Ce---
Confidence 999998644 22111100 0 00 00
Q ss_pred cccccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccc
Q psy14416 807 ETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGE 886 (1065)
Q Consensus 807 ~g~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~ 886 (1065)
++. ++-+|+| |+++++++ |++++.
T Consensus 401 ----------------------~~~-~~~~g~m----------------------------G~~l~~A~--G~a~a~--- 424 (552)
T 1ovm_A 401 ----------------------FIV-QPLWGSI----------------------------GYTLAAAF--GAQTAC--- 424 (552)
T ss_dssp ----------------------EEC-CTTTCCT----------------------------THHHHHHH--HHHHHC---
T ss_pred ----------------------EEe-chhhHhh----------------------------hhHHHHHH--HHHHhC---
Confidence 000 1224444 88888887 888887
Q ss_pred cccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEE
Q psy14416 887 VTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 966 (1065)
Q Consensus 887 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 966 (1065)
|+++|+ +++|||+| +|+.++++++ .++++|+++||+
T Consensus 425 -----~~~~vv---------------------------------~~~GDG~~-~~~~~el~ta-----~~~~l~~~ivv~ 460 (552)
T 1ovm_A 425 -----PNRRVI---------------------------------VLTGDGAA-QLTIQELGSM-----LRDKQHPIILVL 460 (552)
T ss_dssp -----TTSCEE---------------------------------EEEEHHHH-HHHTTHHHHH-----HHTTCCCEEEEE
T ss_pred -----CCCcEE---------------------------------EEECchHH-HhHHHHHHHH-----HHhCCCCEEEEE
Confidence 888999 99999999 9999999999 999999999999
Q ss_pred cCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCC----CeEeeCCHHHHHHHHHHHHhcCCCCEEEE
Q psy14416 967 NNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGH----DGYLCTTVPQIKQAMKKCLQTTTRPSLIN 1042 (1065)
Q Consensus 967 nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~~~~~~l~~~~~~~~~~~~~~~li~ 1042 (1065)
||+|+ +... .. .+. ...+...+.+||.++|++||+ ++++|++.+||+++|+++++. ++|+|||
T Consensus 461 nN~~~-~~~~-----~~--~~~----~~~~~~~~~~d~~~~a~a~G~~~~~~~~~v~~~~~l~~al~~a~~~-~gp~lie 527 (552)
T 1ovm_A 461 NNEGY-TVER-----AI--HGA----EQRYNDIALWNWTHIPQALSLDPQSECWRVSEAEQLADVLEKVAHH-ERLSLIE 527 (552)
T ss_dssp ESSSC-HHHH-----HH--SCT----TCGGGCCCCCCGGGSTTTSCSSCCEEEEEECBHHHHHHHHHHHTTC-SSEEEEE
T ss_pred ECCCC-eEEE-----ee--ccC----CCCcccCCCCCHHHHHHHhCCCcCCCEEEeCCHHHHHHHHHHHHhC-CCCEEEE
Confidence 99983 2110 00 011 001123467999999999999 999999999999999999876 8999999
Q ss_pred EEeCCCCCCCcchhhh
Q psy14416 1043 ILINPSADRKPQNFSW 1058 (1065)
Q Consensus 1043 ~~~~~~~~~~~~~~~~ 1058 (1065)
|.+++++..+.....|
T Consensus 528 v~~~~~~~~~~l~~~~ 543 (552)
T 1ovm_A 528 VMLPKADIPPLLGALT 543 (552)
T ss_dssp EECCTTCCCHHHHHHH
T ss_pred EEcCcccCCHHHHHHH
Confidence 9999988876544433
No 22
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=100.00 E-value=4e-67 Score=638.61 Aligned_cols=516 Identities=18% Similarity=0.212 Sum_probs=401.8
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
.++++++|++.|+++||+++||+||+++++|++++.++ +|++|.++||++|+|||+||||+|| |+||++|+|||++|+
T Consensus 24 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~GyAr~tG-~~v~~~tsGpG~~N~ 102 (570)
T 2vbf_A 24 MYTVGDYLLDRLHELGIEEIFGVPGDYNLQFLDQIISREDMKWIGNANELNASYMADGYARTKK-AAAFLTTFGVGELSA 102 (570)
T ss_dssp CCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHH
T ss_pred cCCHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhcCCCCeEECcCcHHHHHHHHHHHHHHhC-CeEEEEcCCCCHHHH
Confidence 46899999999999999999999999999999999764 7999999999999999999999999 999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCC--C------CccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCC
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGG--F------QECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKP 416 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga--~------Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~ 416 (1065)
++||++|+.+++|||+|||++|..+.++++ + |..||.++|+++|||++++++ +++++.+++|++.|.+++
T Consensus 103 ~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~-~~~~~~l~~A~~~A~~~~- 180 (570)
T 2vbf_A 103 INGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLTA-ENATYEIDRVLSQLLKER- 180 (570)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeeccccchHHHHHHhhhhEEEEEEECc-ccHHHHHHHHHHHHhhCC-
Confidence 999999999999999999999987665443 1 222488999999999999999 999999999999999776
Q ss_pred CEEEEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHH
Q psy14416 417 GVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLI 496 (1065)
Q Consensus 417 GPV~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L 496 (1065)
|||||+||.|++..+++.... +.. + ..+...+.+ .+.+++++++|
T Consensus 181 GPV~l~iP~d~~~~~~~~~~~---~~~------~-------------------------~~~~~~~~~-~~~i~~~~~~l 225 (570)
T 2vbf_A 181 KPVYINLPVDVAAAKAEKPAL---SLE------K-------------------------ESSTTNTTE-QVILSKIEESL 225 (570)
T ss_dssp CCEEEEEEHHHHTSBCCCCSS---CCC-------------------------------------CHHH-HHHHHHHHHHH
T ss_pred CCEEEEcchhhhcCcccCCcc---ccc------c-------------------------cCCCCCccH-HHHHHHHHHHH
Confidence 999999999998766532110 000 0 000011112 57799999999
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH--------HHHhhhcCCCEEEEeCCc
Q psy14416 497 LEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLGAR 568 (1065)
Q Consensus 497 ~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~--------~~~~al~~aDlVI~iG~~ 568 (1065)
+++|||+|++|.++.++++.+++++|+|++++||++++++||.++++||+++|. ..++++++||+||.+|++
T Consensus 226 ~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~ 305 (570)
T 2vbf_A 226 KNAQKPVVIAGHEVISFGLEKTVTQFVSETKLPITTLNFGKSAVDESLPSFLGIYNGKLSEISLKNFVESADFILMLGVK 305 (570)
T ss_dssp HHCSSEEEEECHHHHHTTCHHHHHHHHHHHCCCEEECSTTTTSSCTTSTTEEEECCGGGSCHHHHHHHHHCSEEEEESCC
T ss_pred HcCCCCEEEECcCccccChHHHHHHHHHHHCCCEEECcccCccCCCCCcCccCCcCCCcCCHHHHHHHHhCCEEEEECCC
Confidence 999999999999988778889999999999999999999999999999998763 345678899999999999
Q ss_pred cccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhh
Q psy14416 569 LNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 648 (1065)
Q Consensus 569 ~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~ 648 (1065)
+.++.+..|.. +.++.++|+||.|+.++++.+..++ |++.+|++|.+.+.. . . |. |+ ..
T Consensus 306 ~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~----~~~~~l~~L~~~l~~--------~-~-~~--~~----~~ 364 (570)
T 2vbf_A 306 LTDSSTGAFTH-HLDENKMISLNIDEGIIFNKVVEDF----DFRAVVSSLSELKGI--------E-Y-EG--QY----ID 364 (570)
T ss_dssp CCGGGTTTTCC-CCCGGGEEEECSSCEEETTEEECSS----CHHHHHHTGGGCCSC--------C-C-CS--CC----CC
T ss_pred ccccccccccc-CCCCCeEEEEeCCHHHhCCeeecCC----CHHHHHHHHHHhccc--------c-c-cc--cc----hh
Confidence 99887766654 3346789999999998887665443 789999988776641 0 1 21 10 00
Q ss_pred hhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEE
Q psy14416 649 RQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 728 (1065)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv 728 (1065)
++...+. ....++ + +..++. .|.+.+|++++|+
T Consensus 365 ~~~~~~~----------------------------~~~~~~-----~---~~~~~~-----------~l~~~l~~~~iv~ 397 (570)
T 2vbf_A 365 KQYEEFI----------------------------PSSAPL-----S---QDRLWQ-----------AVESLTQSNETIV 397 (570)
T ss_dssp CCCCCCC----------------------------CCSSBC-----C---HHHHHH-----------HHHHHCCSSEEEE
T ss_pred hhccccC----------------------------CCCCCc-----C---HHHHHH-----------HHHHhcCCCCEEE
Confidence 0000000 112245 6 778888 9999999999999
Q ss_pred ECCCCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcc
Q psy14416 729 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDET 808 (1065)
Q Consensus 729 ~d~G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 808 (1065)
.|.|++. |..+++. ++ .+ +.
T Consensus 398 ~d~G~~~-~~~~~~~-----------~~------------------------------------~~-------~~----- 417 (570)
T 2vbf_A 398 AEQGTSF-FGASTIF-----------LK------------------------------------SN-------SR----- 417 (570)
T ss_dssp ECTTHHH-HHHTTSC-----------CC------------------------------------TT-------CE-----
T ss_pred EeCCHHH-HHHHhcc-----------cC------------------------------------CC-------Ce-----
Confidence 9998643 2111100 00 00 00
Q ss_pred cccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccc
Q psy14416 809 TYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVT 888 (1065)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~ 888 (1065)
.+. ++.+|+| |+++++++ |++++.
T Consensus 418 --------------------~~~-~~~~g~m----------------------------G~~l~~A~--Gaala~----- 441 (570)
T 2vbf_A 418 --------------------FIG-QPLWGSI----------------------------GYTFPAAL--GSQIAD----- 441 (570)
T ss_dssp --------------------EEC-CTTTCCT----------------------------TTHHHHHH--HHHHHC-----
T ss_pred --------------------Eec-Cccchhh----------------------------hhhHHHHH--HHHHhC-----
Confidence 000 2224445 88888887 899988
Q ss_pred cccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcC
Q psy14416 889 TVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNN 968 (1065)
Q Consensus 889 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn 968 (1065)
|+++|+ +++|||+| +|+.++++++ +++++|+++||+||
T Consensus 442 ---~~~~vv---------------------------------~~~GDG~~-~~~~~eL~ta-----~~~~l~~~ivv~nN 479 (570)
T 2vbf_A 442 ---KESRHL---------------------------------LFIGDGSL-QLTVQELGLS-----IREKLNPICFIINN 479 (570)
T ss_dssp ---TTSEEE---------------------------------EEEEHHHH-HHHGGGHHHH-----HHTTCCCEEEEEES
T ss_pred ---CCCcEE---------------------------------EEEcchhh-hcCHHHHHHH-----HHcCCCCEEEEEEC
Confidence 889999 99999999 9999999999 99999999999999
Q ss_pred CcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCC-----eEeeCCHHHHHHHHHHH-HhcCCCCEEEE
Q psy14416 969 NGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHD-----GYLCTTVPQIKQAMKKC-LQTTTRPSLIN 1042 (1065)
Q Consensus 969 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~l~~~~~~~-~~~~~~~~li~ 1042 (1065)
+|+ +... .+ . +. ...+...+.+||.++|++||++ +++|++.+||+++|+++ ++. ++|+|||
T Consensus 480 ~~~-~~~~-----~~-~-~~----~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v~~~~el~~al~~a~~~~-~~p~lie 546 (570)
T 2vbf_A 480 DGY-TVER-----EI-H-GP----TQSYNDIPMWNYSKLPETFGATEDRVVSKIVRTENEFVSVMKEAQADV-NRMYWIE 546 (570)
T ss_dssp SSC-HHHH-----HH-S-CT----TCGGGCCCCCCGGGHHHHTTCCTTTEEEEEECBHHHHHHHHHHHHHCT-TSEEEEE
T ss_pred Cch-HHHH-----HH-h-cc----CCCccCCCCCCHHHHHHHcCCCcCCcceEEecCHHHHHHHHHHHHhcC-CCcEEEE
Confidence 882 2111 00 0 10 0112234679999999999998 89999999999999985 554 8999999
Q ss_pred EEeCCCCCCCcchhhh
Q psy14416 1043 ILINPSADRKPQNFSW 1058 (1065)
Q Consensus 1043 ~~~~~~~~~~~~~~~~ 1058 (1065)
|.+++++..+.....|
T Consensus 547 v~~~~~~~~~~~~~~~ 562 (570)
T 2vbf_A 547 LVLEKEDAPKLLKKMG 562 (570)
T ss_dssp EECCTTCCCHHHHHHH
T ss_pred EEcCcccccHHHHHHH
Confidence 9999998876644444
No 23
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=100.00 E-value=2.7e-43 Score=426.92 Aligned_cols=153 Identities=27% Similarity=0.391 Sum_probs=148.1
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
|++|++|+|++.|+++||++|||+||+.+++|+++|.+. +|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus 1 m~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~dal~~~~~i~~i~~~~E~~Aa~~A~GyAr~tg~~~v~~~TsGpG~~N 80 (549)
T 3eya_A 1 MKQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLH 80 (549)
T ss_dssp CCCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHHCSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHT
T ss_pred CCccHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHHhcCCCeEEEeCChHHHHHHHHHHHHHhCCCEEEEeCCCCcHhh
Confidence 468999999999999999999999999999999999865 7999999999999999999999999999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+++||++|+.+++|||+|+|+++....+++.+|++||.+++++++||++++.+++++++.+++|++.|.++ +||
T Consensus 81 ~~~gi~~A~~~~vPvl~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~-~GP 154 (549)
T 3eya_A 81 LINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLN-RGV 154 (549)
T ss_dssp THHHHHHHHHTTCCEEEEEEESCGGGTTSCCTTCCCHHHHTSTTCSEEEECCSGGGHHHHHHHHHHHHHHT-TSE
T ss_pred hHHHHHHHHhhCCCEEEEeCCCchhhcCCCCCCccCHHHHHhhhhheEEEeCCHHHHHHHHHHHHHHHhhC-CCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999874 477
No 24
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=100.00 E-value=3e-42 Score=421.12 Aligned_cols=153 Identities=31% Similarity=0.498 Sum_probs=149.3
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 86 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~ 86 (1065)
.|+++++|++.|+++||++|||+||+.+++|+++|.+. +|++|.++||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 11 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~ 90 (590)
T 1ybh_A 11 PRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATNL 90 (590)
T ss_dssp CEEHHHHHHHHHHTTTCCEEEECCCGGGHHHHHHHHHCSSCEECCCSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTT
T ss_pred CccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhccCCccEEeeCCHHHHHHHHHHHHHHHCCCEEEEeccCchHHHH
Confidence 47999999999999999999999999999999999764 69999999999999999999999999999999999999999
Q ss_pred hHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 87 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 87 l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
++||++|+.+++|||+|+|+++....+++.+|++||.+++++++||++++++++++++.+++|++.|.++||||
T Consensus 91 ~~gv~~A~~~~vPll~itg~~~~~~~g~~~~Q~~d~~~~~~~~~k~~~~v~~~~~i~~~l~~A~~~a~~~~~GP 164 (590)
T 1ybh_A 91 VSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGP 164 (590)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSEEEECCCGGGHHHHHHHHHHHHHSSSCCE
T ss_pred HHHHHHHHhhCCCEEEEeCcCCccccCCCcccccCHHHHHHHHhCeEEecCCHHHHHHHHHHHHHHHhhCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888
No 25
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=100.00 E-value=4e-42 Score=420.84 Aligned_cols=156 Identities=25% Similarity=0.391 Sum_probs=148.1
Q ss_pred cccccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh--CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCc
Q psy14416 4 DYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ--EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGP 81 (1065)
Q Consensus 4 ~~~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~--~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GP 81 (1065)
..+++|+++++|++.|+++||++|||+||+.+++|+++|.+ .+|++|.+|||++|+|||+||+|+||||+||++|+||
T Consensus 6 ~~~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~dal~~~~~~i~~i~~~hE~~Aa~aA~GyAr~tg~~gv~~~TsGp 85 (603)
T 4feg_A 6 TKQTNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAGP 85 (603)
T ss_dssp ---CEEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHTTTTSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTTH
T ss_pred CCcCeeeHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHHHhccCCCeEEEecChHHHHHHHHHHHHHhCCceEEEecCCc
Confidence 44678999999999999999999999999999999999986 3799999999999999999999999999999999999
Q ss_pred chhhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 82 GLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 82 G~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
|++|+++||++|+.+++|||+|+|++++...+++.+|++||.+++++++||++++.+++++++.+++|++.|.+ ++||
T Consensus 86 G~~N~~~gia~A~~~~vPvl~itG~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~-~~GP 163 (603)
T 4feg_A 86 GGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYA-HQGV 163 (603)
T ss_dssp HHHTTHHHHHHHHHTTCCEEEEEEECCTTTTTSCCTTCCCCGGGGTTTCSEEEECCCSTTHHHHHHHHHHHHHH-HTSE
T ss_pred hHHHHHHHHHHHHHcCCCEEEEecCCcccccCCCccccccHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHhc-CCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987 4566
No 26
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=100.00 E-value=5.8e-42 Score=422.93 Aligned_cols=154 Identities=27% Similarity=0.432 Sum_probs=149.4
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
..|+++++|++.|+++||++|||+||+.+++|+++|.+ .+|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus 80 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~pl~dal~~~~~i~~v~~~hE~~Aa~aAdGyAr~tGkpgvv~~TsGpG~~N 159 (677)
T 1t9b_A 80 VGLTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATN 159 (677)
T ss_dssp TTCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHTTTCSSSEEECCSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHT
T ss_pred cCCCHHHHHHHHHHHcCCCEEEEecCccHHHHHHHHHhCCCCeEEEeCChHHHHHHHHHHHHHHCCCEEEEECCChHHHH
Confidence 45899999999999999999999999999999999975 46999999999999999999999999999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+++||++|+.+++|||+|+|++++...+++.||++||..++++++||++++++++++++.+++|++.|.++||||
T Consensus 160 ~~~gia~A~~d~vPllvItG~~~~~~~g~~a~Q~~Dq~~i~~~~tk~~~~v~~~~~i~~~i~~A~~~A~~grpGP 234 (677)
T 1t9b_A 160 VVTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGP 234 (677)
T ss_dssp THHHHHHHHHHTCCEEEEEEECCTTTTTSCCTTCCCHHHHTGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCE
T ss_pred HHHHHHHHHHcCCCEEEEeCCCChhhcCCCCccccCHHHHhhhheeEEEEcCCHHHHHHHHHHHHHHHhhCCCce
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988776
No 27
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=100.00 E-value=4.5e-42 Score=417.92 Aligned_cols=158 Identities=39% Similarity=0.691 Sum_probs=151.1
Q ss_pred CcccccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcc
Q psy14416 3 EDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPG 82 (1065)
Q Consensus 3 ~~~~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG 82 (1065)
++.++.|+++++|++.|+++||++|||+||+.+++|+++|.+.+|++|.++||++|+|||+||+|+||||+||++|+|||
T Consensus 4 ~~~~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~i~~~~E~~Aa~~A~GyAr~tg~pgv~~~TsGpG 83 (568)
T 2c31_A 4 DDNVELTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAGYAASIAGYIEGKPGVCLTVSAPG 83 (568)
T ss_dssp ---CCEEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHTTCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHH
T ss_pred CcCCCcccHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHhCCCcEEEeCcHHHHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 35678899999999999999999999999999999999998778999999999999999999999999999999999999
Q ss_pred hhhhhHHHhhcccCCCcEEEEecCCCCCcCc--cCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 83 LLHTFGGMANAQINCWPMLVIGGSCAQDHEG--IGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 83 ~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g--~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
++|+++|+++|+.+++|||+|+|+++....+ ++.+|++||.+++++++||++++++++++++.+++|++.|.++||||
T Consensus 84 ~~N~~~~i~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GP 163 (568)
T 2c31_A 84 FLNGVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGRPGG 163 (568)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTCCCHHHHSGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCE
T ss_pred HHHHHHHHHHHHhcCCCEEEEccCCCccccCCCCCcccccCHHHHHHhhhheeeecCCHHHHHHHHHHHHHHhcCCCCce
Confidence 9999999999999999999999999998888 68999999999999999999999999999999999999999989888
No 28
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=100.00 E-value=1.4e-41 Score=413.31 Aligned_cols=154 Identities=29% Similarity=0.443 Sum_probs=144.6
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 86 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~ 86 (1065)
..||++++|++.|+++||++|||+||+.+++|+++|.+.+|++|.++||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 9 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~v~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~ 88 (566)
T 1ozh_A 9 QWAHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANAAFMAAAVGRITGKAGVALVTSGPGCSNL 88 (566)
T ss_dssp EESCHHHHHHHHHHHHTCCEEEEECCTTTHHHHHHGGGSSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTT
T ss_pred ccCcHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHHHCCCEEEEEccChHHHHH
Confidence 34899999999999999999999999999999999977779999999999999999999999999999999999999999
Q ss_pred hHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 87 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 87 l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
++||++|+.+++|||+|+|+++....+++.+|++||.+++++++||++++++++++++.+++|++.|.++||||
T Consensus 89 ~~~l~~A~~~~vPll~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~r~GP 162 (566)
T 1ozh_A 89 ITGMATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGS 162 (566)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCTTTC------CCCHHHHHGGGCSEEEECCSGGGHHHHHHHHHHHHHSSSCCE
T ss_pred HHHHHHHHhcCCCEEEEeCCCccccCCCCcccccCHHHHHHHHhheEEEcCCHHHHHHHHHHHHHHHhcCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
No 29
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=100.00 E-value=7.7e-42 Score=415.62 Aligned_cols=155 Identities=41% Similarity=0.728 Sum_probs=150.2
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
|..|+++++|++.|+++||++|||+||+.+++|+++|.+.+|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus 5 ~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~i~~~hE~~Aa~~A~Gyar~tg~pgv~~~TsGpG~~N 84 (564)
T 2q28_A 5 LQMTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAEGIRYIGFRHEQSAGYAAAASGFLTQKPGICLTVSAPGFLN 84 (564)
T ss_dssp CCEEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHTTCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHH
T ss_pred cccCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEeeCCHHHHHHHHHHHHHHhCCCEEEEEccCchHHH
Confidence 55689999999999999999999999999999999998778999999999999999999999999999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCc--cCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEG--IGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g--~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+++||++|+.+++|||+|+|+++....+ ++.+|++||.+++++++||++++++++++++.+++|++.|.++||||
T Consensus 85 ~~~gi~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GP 161 (564)
T 2q28_A 85 GLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPGG 161 (564)
T ss_dssp HHHHHHHHHHHTCCEEEEEEECCHHHHHTTSCCTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCE
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCccccCCCCCccccccHHHHHHHhhheeeecCCHHHHHHHHHHHHHHHhcCCCce
Confidence 9999999999999999999999998877 78999999999999999999999999999999999999999989888
No 30
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=100.00 E-value=4.1e-41 Score=413.14 Aligned_cols=153 Identities=25% Similarity=0.356 Sum_probs=149.0
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhc-CCcEEEEEeCCcchhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLT-KKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~t-g~~gv~~~t~GPG~~N 85 (1065)
+|+++|+|++.|+++||++|||+||+.+++|+++|.+ .+|++|.++||++|+|||+||+|+| ||++||++|+|||++|
T Consensus 26 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgg~~~v~~~TsGpG~~N 105 (616)
T 2pan_A 26 KMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTD 105 (616)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHHHHSTTCCEEEEECSTHHHHT
T ss_pred cCcHHHHHHHHHHHCCCCEEEECCCCccHHHHHHHHhcCCCcEEeeCCHHHHHHHHHHHHHhcCCCceEEEeCCCchHHH
Confidence 5799999999999999999999999999999999975 4799999999999999999999999 8999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+++||++|+.+++|||+|+|+++....+++.+|++||.+++++++||++++.+++++++.+++|++.|.++||||
T Consensus 106 ~~~~l~~A~~~~vPlvvItg~~p~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~r~GP 180 (616)
T 2pan_A 106 MITALYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGP 180 (616)
T ss_dssp SHHHHHHHHHTTCCEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHhcCCCEEEEecCCcccccCcccccccCHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcCCCce
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
No 31
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=100.00 E-value=3.3e-41 Score=406.84 Aligned_cols=152 Identities=22% Similarity=0.331 Sum_probs=147.4
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 87 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l 87 (1065)
++|++++|++.|+++||++|||+||+.+++|+++|. .+|++|.++||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 1 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~-~~i~~i~~~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~~ 79 (528)
T 1q6z_A 1 MASVHGTTYELLRRQGIDTVFGNPGSNALPFLKDFP-EDFRYILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAM 79 (528)
T ss_dssp -CBHHHHHHHHHHHTTCCEEEECCCGGGHHHHTTCC-TTCEEEECSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTH
T ss_pred CCcHHHHHHHHHHHCCCCEEEECCCcchHHHHHHHh-hcCcEEEECcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHHH
Confidence 368999999999999999999999999999999994 5799999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCcEEEEecCCCCCcCccCCCcc-cchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 88 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQE-CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 88 ~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~-~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+||++|+.+++|||+|+|++++...+++.+|+ +||.+++++++||+.++++++++++.+++|++.|.++||||
T Consensus 80 ~~l~~A~~~~~Pll~itg~~~~~~~~~~~~q~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~a~~~~~GP 153 (528)
T 1q6z_A 80 GALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQGP 153 (528)
T ss_dssp HHHHHHHHTTCCEEEEEEECCHHHHTTTCTTCCTTGGGSSTTSCSCEECCSSGGGHHHHHHHHHHHHHSSSCCC
T ss_pred HHHHHHhhcCCCEEEEeCCCcccccCCCcccccccHHHHHHHhhHhhhcCCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999999999 79999999999999999999999999999999999999988
No 32
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=100.00 E-value=1.4e-40 Score=405.46 Aligned_cols=154 Identities=18% Similarity=0.162 Sum_probs=146.1
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
..++++++|++.|+++||++|||+||+.+++|+++|.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|
T Consensus 9 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aAdGyAr~tG~pgv~~~TsGpG~~N 88 (578)
T 3lq1_A 9 VLTDYLAAFIEELVQAGVKEAIISPGSRSTPLALMMAEHPILKIYVDVDERSAGFFALGLAKASKRPVVLLCTSGTAAAN 88 (578)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHCCCEEEEECSSHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCceEEEecCcHHHHHHHHHHHHhhCCCEEEEECCchhhhh
Confidence 35789999999999999999999999999999999986 47999999999999999999999999999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHH-------HHHHHHHHhhcCCC
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQ-------HVEKAVRLSTFGKP 158 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~-------~l~~A~~~A~~~rp 158 (1065)
+++||++|+.+++|||+|+|+++....+++.||++||.+++++++||++++++++++++ .+++|++.|.++||
T Consensus 89 ~~~gia~A~~d~vPll~itG~~p~~~~g~~~~Qe~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~ 168 (578)
T 3lq1_A 89 YFPAVAEANLSQIPLIVLTADRPHELRNVGAPQAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPR 168 (578)
T ss_dssp THHHHHHHHHTTCCEEEEEEECCGGGTTSSCTTCCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred hhHHHHHHHhcCCCeEEEeCCCCHHhhcCCCCCCcCHhhHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHHHhhCCCC
Confidence 99999999999999999999999999999999999999999999999999999998764 89999999988765
Q ss_pred cc
Q psy14416 159 GR 160 (1065)
Q Consensus 159 GP 160 (1065)
||
T Consensus 169 GP 170 (578)
T 3lq1_A 169 GP 170 (578)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 33
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=100.00 E-value=2.6e-40 Score=402.08 Aligned_cols=155 Identities=27% Similarity=0.372 Sum_probs=150.5
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
|++|+++++|++.|+++||++|||+||+.+++|+++|.+.+|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus 1 ~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N 80 (563)
T 2uz1_A 1 MAMITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYARAGAKLGVALVTAGGGFTN 80 (563)
T ss_dssp -CEEEHHHHHHHHHHHHTCCCEEECCCGGGHHHHHHHHHHTCCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTTHHHHT
T ss_pred CCccCHHHHHHHHHHHCCCCEEEECCCCchHHHHHHHHhcCCcEEeeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHH
Confidence 56799999999999999999999999999999999998667999999999999999999999999999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCccCCCcc-cchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE-CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~-~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+++||++|+.+++|||+|+|+++....+++.+|+ +||.+++++++||++++++++++++.+++|++.|.++||||
T Consensus 81 ~~~~l~~A~~~~~Pll~itg~~~~~~~~~~~~Q~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GP 156 (563)
T 2uz1_A 81 AVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAAPITKWAHRVMATEHIPRLVMQAIRAALSAPRGP 156 (563)
T ss_dssp THHHHHHHHHHTCCEEEEEEECCGGGTTSCCTTCCCCHHHHHGGGCSEEEECCCGGGHHHHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcccCCchhhhhhccHHHHhhhhhceEEEcCCHHHHHHHHHHHHHHhcCCCCce
Confidence 9999999999999999999999999999999999 99999999999999999999999999999999999988888
No 34
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=100.00 E-value=2.4e-40 Score=401.46 Aligned_cols=145 Identities=15% Similarity=0.135 Sum_probs=138.8
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
..+|++|+|++.|+++||++|||+||+.+++|+++|.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|
T Consensus 6 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~~AdGyAr~tG~pgv~~~TsGpG~~N 85 (556)
T 3hww_A 6 FNRRWAAVILEALTRHGVRHICIAPGSRSTLLTLAAAENSAFIHHTHFDERGLGHLALGLAKVSKQPVAVIVTSGTAVAN 85 (556)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEECCCTTSHHHHHHHHHCTTCEEEECSCHHHHHHHHHHHHHHHCSCEEEEECSSHHHHT
T ss_pred hhhHHHHHHHHHHHHCCCCEEEEcCCCCcHHHHHHHhhCCCceEEEecCCcHHHHHHHHHHHhhCCCEEEEECCCcHHHh
Confidence 35799999999999999999999999999999999965 57999999999999999999999999999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCccc------HHHHHHHHHH
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHL------IGQHVEKAVR 151 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~------i~~~l~~A~~ 151 (1065)
+++||++|+.+++|||+|||++++...+++.||++||.+++++++||++++.++++ +++.+++|++
T Consensus 86 ~~~gia~A~~d~vPll~itG~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~~ 157 (556)
T 3hww_A 86 LYPALIEAGLTGEKLILLTADRPPELIDCGANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALG 157 (556)
T ss_dssp THHHHHHHHHHCCCEEEEEEECCGGGSSSSCTTCCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhCCCeEEEeCCCCHHHhccCCCccccHHHHHhhheeEEEecCCCcccccHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999875 8888888884
No 35
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=100.00 E-value=2.5e-40 Score=405.16 Aligned_cols=152 Identities=16% Similarity=0.170 Sum_probs=145.7
Q ss_pred ccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhh
Q psy14416 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 87 (1065)
Q Consensus 9 ~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l 87 (1065)
++++++|++.|+++||++|||+||+.+++|+++|.+. +|++|.+|||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 31 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aA~GyAr~tgkpgv~~~TsGpG~~N~~ 110 (604)
T 2x7j_A 31 THYIGSFIDEFALSGITDAVVCPGSRSTPLAVLCAAHPDISVHVQIDERSAGFFALGLAKAKQRPVLLICTSGTAAANFY 110 (604)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECCCSTTHHHHHHHHHCTTCEEEECSSHHHHHHHHHHHHHHHTSCEEEEECSSHHHHTTH
T ss_pred HHHHHHHHHHHHHcCCCEEEECcCcccHHHHHHHHhCCCceEEEecChHHHHHHHHHHHHhhCCCEEEEECChhHHHHHH
Confidence 5899999999999999999999999999999999764 699999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCccc-------HHHHHHHHHHHhhcCCCcc
Q psy14416 88 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHL-------IGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 88 ~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~-------i~~~l~~A~~~A~~~rpGP 160 (1065)
+||++|+.+++|||+|||+++....+++.+|++||.+++++++||+++++++++ +++.+++|++.|.++||||
T Consensus 111 ~gia~A~~~~vPlv~ItG~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GP 190 (604)
T 2x7j_A 111 PAVVEAHYSRVPIIVLTADRPHELREVGAPQAINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGP 190 (604)
T ss_dssp HHHHHHHHHTCCEEEEEEECCGGGSSSCCTTCCCCTTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCE
T ss_pred HHHHHHhhcCCCEEEEeCCCCHHHhCCCCCCcCcHHHHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCc
Confidence 999999999999999999999999999999999999999999999999999998 9999999999998865444
No 36
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=100.00 E-value=8.9e-40 Score=399.16 Aligned_cols=154 Identities=19% Similarity=0.239 Sum_probs=148.2
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC--CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcch
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE--GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGL 83 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~--~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~ 83 (1065)
|..|+++++|++.|+++||++|||+||+.+++|+++|.+. +|++|.++||++|+|||+||+|+||||+||++|+|||+
T Consensus 1 ~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~i~~v~~~hE~~Aa~~A~GyAr~tg~p~v~~~TsGpG~ 80 (589)
T 2pgn_A 1 MAIKRGADLIVEALEEYGTEQVVGFIGHTSHFVADAFSKSHLGKRVINPATELGGAWMVNGYNYVKDRSAAVGAWHCVGN 80 (589)
T ss_dssp -CEEEHHHHHHHHHHHTTCCEEEEECSGGGHHHHHHHHTSTTSTTCBCCSSHHHHHHHHHHHHHHHTSCCEEEEEEGGGG
T ss_pred CCCCcHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHHCCCEEEEEecCchH
Confidence 5678999999999999999999999999999999999864 69999999999999999999999999999999999999
Q ss_pred hhhhHHHhhcccCCCcEEEEecCCCCCcCccC-CCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 84 LHTFGGMANAQINCWPMLVIGGSCAQDHEGIG-GFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 84 ~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~-~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+|+++||++|+.+++|||+|+|+++....+++ .+|++||.. +++++||++++++++++++.+++|++.|.++||||
T Consensus 81 ~N~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~Q~~d~~~-~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GP 157 (589)
T 2pgn_A 81 LLLHAAMQEARTGRIPAVHIGLNSDGRLAGRSEAAQQVPWQS-FTPIARSTQRVERLDKVGEAIHEAFRVAEGHPAGP 157 (589)
T ss_dssp GGCHHHHHHHHHTTCCEEEEEEESCGGGTTCTTCSSCCCGGG-GTTTSSEEEECCSGGGHHHHHHHHHHHHTSSSCCE
T ss_pred HHHHHHHHHHHhcCCCEEEEecCCcccccCCCCcccccChhh-ccccEEEEeecCCHHHHHHHHHHHHHHHhcCCCcc
Confidence 99999999999999999999999999999999 999999999 99999999999999999999999999999887777
No 37
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=100.00 E-value=1.8e-39 Score=395.29 Aligned_cols=151 Identities=23% Similarity=0.338 Sum_probs=145.6
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCC-hHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIP-VIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 86 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~-~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~ 86 (1065)
+|+++++|++.|+++||++|||+||+. +++|+++|. . |++|.++||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 11 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~~l~~al~-~-i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~ 88 (573)
T 2iht_A 11 KPTAAHALLSRLRDHGVGKVFGVVGREAASILFDEVE-G-IDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGMTNL 88 (573)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCCGGGGTCCSCSST-T-CEEEECSSHHHHHHHHHHHHHHHCSCEEEEECTTHHHHHH
T ss_pred CccHHHHHHHHHHHCCCCEEEEecCCcchhHHHHHHc-C-CeEEeeCCHHHHHHHHHHHHHHHCCCEEEEEccCchHHHH
Confidence 479999999999999999999999999 999999998 4 9999999999999999999999999999999999999999
Q ss_pred hHHHhhcccCCCcEEEEecCCCCCcCcc-CCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 87 FGGMANAQINCWPMLVIGGSCAQDHEGI-GGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 87 l~gla~A~~~~~Pll~Isg~~~~~~~g~-~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
++|+++|+.+++|||+|+|+++....++ +.+|++||.+++++++||++++++++++++.+++|++.|.++||||
T Consensus 89 ~~~v~~A~~~~~Pll~itg~~~~~~~~~~~~~Q~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~~GP 163 (573)
T 2iht_A 89 STGIATSVLDRSPVIALAAQSESHDIFPNDTHQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGP 163 (573)
T ss_dssp HHHHHHHHHHTCCEEEEEEESCGGGCCTTTSTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHTBSSCCC
T ss_pred HHHHHHHHhhCCCEEEEcccCcccccCCcCccccCCHHHHHHhHhhEEEEcCCHHHHHHHHHHHHHHHhcCCCce
Confidence 9999999999999999999999999999 9999999999999999999999999999999999999998866544
No 38
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=100.00 E-value=2.3e-39 Score=395.46 Aligned_cols=153 Identities=21% Similarity=0.317 Sum_probs=146.9
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC--CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE--GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~--~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
+|+++|+|++.|+++||++|||+||+.+++|+++|.+. +|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus 3 ~~~~a~~lv~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgk~~v~~~tsGpG~~N 82 (590)
T 1v5e_A 3 KINIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGASH 82 (590)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHTTSSSTTCCCEEEECSSHHHHHHHHHHHHHTTCCCCEEEECTTHHHHT
T ss_pred CccHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHhcCCCCeEEeeCCHHHHHHHHHHHHHHHCCCEEEEeCcChHHHH
Confidence 47999999999999999999999999999999999764 7999999999999999999999999999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+++||++|+.+++|||+|+|+++....+++.+|++||.+++++++||++++++++++++.+++|++.|.++||||
T Consensus 83 ~~~gl~~A~~~~vPll~Itg~~p~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GP 157 (590)
T 1v5e_A 83 LINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQNPMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKRGVA 157 (590)
T ss_dssp THHHHHHHHHHTCCEEEEEEECCGGGTTTTCTTCCCCHHHHHTTCSEEEECCSGGGHHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcccCCCCcccccCHHHHHHhhccEEEEeCCHHHHHHHHHHHHHHHhcCCCce
Confidence 999999999999999999999999999999999999999999999999999999999999999999988776544
No 39
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=100.00 E-value=2.1e-39 Score=394.39 Aligned_cols=151 Identities=15% Similarity=0.190 Sum_probs=141.4
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 86 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~ 86 (1065)
+|+++++|++.|+++||++|||+||+.+++|+++|.+. +|++|.++||++|+|||+||+|+|| |+||++|+|||++|+
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~ 80 (568)
T 2wvg_A 2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKG-AAAAVVTYSVGALSA 80 (568)
T ss_dssp CEEHHHHHHHHHHHTTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHH
T ss_pred CcCHHHHHHHHHHHcCCCEEEeCCCCccHHHHHHHhccCCceEeccCcHHHHHHHHHHHHHhhC-CeEEEEeCCCCHHHH
Confidence 58999999999999999999999999999999999864 7999999999999999999999999 999999999999999
Q ss_pred hHHHhhcccCCCcEEEEecCCCCCcCccCC--Cc-----c-cchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCC
Q psy14416 87 FGGMANAQINCWPMLVIGGSCAQDHEGIGG--FQ-----E-CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKP 158 (1065)
Q Consensus 87 l~gla~A~~~~~Pll~Isg~~~~~~~g~~~--~Q-----~-~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rp 158 (1065)
++||++|+.+++|||+|+|+++....+++. +| + .||.+++++++||++++++++++++.+++|++.|.++|
T Consensus 81 ~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~- 159 (568)
T 2wvg_A 81 FDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREK- 159 (568)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHHTTSCSCEEEECSGGGHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccchHHHHHHHHhhEeEEEEeCCHHHHHHHHHHHHHHHHhCC-
Confidence 999999999999999999999998876653 22 3 38999999999999999999999999999999998875
Q ss_pred cc
Q psy14416 159 GR 160 (1065)
Q Consensus 159 GP 160 (1065)
||
T Consensus 160 GP 161 (568)
T 2wvg_A 160 KP 161 (568)
T ss_dssp CC
T ss_pred CC
Confidence 77
No 40
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=100.00 E-value=2.1e-39 Score=394.27 Aligned_cols=151 Identities=16% Similarity=0.224 Sum_probs=141.1
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 86 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~ 86 (1065)
+|+++++|++.|+++||++|||+||+.+++|+++|.+. +|++|.++||++|+|||+||+|+|| |+||++|+|||++|+
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~v~~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~ 80 (566)
T 2vbi_A 2 TYTVGMYLAERLVQIGLKHHFAVAGDYNLVLLDQLLLNKDMKQIYCCNELNCGFSAEGYARSNG-AAAAVVTFSVGAISA 80 (566)
T ss_dssp CCBHHHHHHHHHHHHTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHH
T ss_pred ccCHHHHHHHHHHHcCCCEEEeCCCCccHHHHHHHhcCCCCeEEeeCcHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHH
Confidence 58999999999999999999999999999999999865 6999999999999999999999999 999999999999999
Q ss_pred hHHHhhcccCCCcEEEEecCCCCCcCccCC--Cc-----c-cchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCC
Q psy14416 87 FGGMANAQINCWPMLVIGGSCAQDHEGIGG--FQ-----E-CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKP 158 (1065)
Q Consensus 87 l~gla~A~~~~~Pll~Isg~~~~~~~g~~~--~Q-----~-~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rp 158 (1065)
++||++|+.+++|||+|+|+++....+++. +| + .||.+++++++||++++++++++++.+++|++.|.++|
T Consensus 81 ~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~- 159 (566)
T 2vbi_A 81 MNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEMARQVTCAAESITDAHSAPAKIDHVIRTALRER- 159 (566)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHHHHhhhEeEEEEeCCHHHHHHHHHHHHHHHHhCC-
Confidence 999999999999999999999998877654 22 3 38999999999999999999999999999999998765
Q ss_pred cc
Q psy14416 159 GR 160 (1065)
Q Consensus 159 GP 160 (1065)
||
T Consensus 160 GP 161 (566)
T 2vbi_A 160 KP 161 (566)
T ss_dssp CC
T ss_pred CC
Confidence 66
No 41
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=100.00 E-value=1.6e-39 Score=395.25 Aligned_cols=151 Identities=19% Similarity=0.261 Sum_probs=140.6
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchh
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 84 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~ 84 (1065)
|++|+++++|++.|+++||++|||+||+.+++|+++|.+. +|++|.++||++|+|||+||+|+|| |+||++|+|||++
T Consensus 1 ~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~v~~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~ 79 (563)
T 2vk8_A 1 MSEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKG-MSCIITTFGVGEL 79 (563)
T ss_dssp -CEEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHGGGGSTTCEECCCSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHH
T ss_pred CCccCHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHhhcCCceEEccCchHHHHHHHHHHHHhhC-CcEEEEcCCCcHH
Confidence 4678999999999999999999999999999999999864 6999999999999999999999999 9999999999999
Q ss_pred hhhHHHhhcccCCCcEEEEecCCCCCcC----------ccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhh
Q psy14416 85 HTFGGMANAQINCWPMLVIGGSCAQDHE----------GIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLST 154 (1065)
Q Consensus 85 N~l~gla~A~~~~~Pll~Isg~~~~~~~----------g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~ 154 (1065)
|+++||++|+.+++|||+|+|+++.... +.+.+| ||.+++++++||+.++++++++++.+++|++.|.
T Consensus 80 N~~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~~q--~~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~ 157 (563)
T 2vk8_A 80 SALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFT--VFHRMSANISETTAMITDIATAPAEIDRCIRTTY 157 (563)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSSCSS--HHHHHHHTTCSEEEECCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCcchH--HHHHHhhhhEEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999997653 456777 5889999999999999999999999999999998
Q ss_pred cCCCcc
Q psy14416 155 FGKPGR 160 (1065)
Q Consensus 155 ~~rpGP 160 (1065)
+++ ||
T Consensus 158 ~~~-GP 162 (563)
T 2vk8_A 158 VTQ-RP 162 (563)
T ss_dssp HHT-SC
T ss_pred hCC-CC
Confidence 764 66
No 42
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=100.00 E-value=4.6e-39 Score=390.98 Aligned_cols=156 Identities=18% Similarity=0.230 Sum_probs=142.3
Q ss_pred cccccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCC-CeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcc
Q psy14416 4 DYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPG 82 (1065)
Q Consensus 4 ~~~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~-i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG 82 (1065)
..+.+|+++++|++.|+++||++|||+||+.+++|+++|.+.+ +++|.++||++|+|||+||+|+||||+||++|+|||
T Consensus 16 ~~~~~~~~a~~lv~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~~~i~~~~E~~Aa~~A~GyAr~tgkp~v~~~TsGpG 95 (565)
T 2nxw_A 16 PRGSHMKLAEALLRALKDRGAQAMFGIPGDFALPFFKVAEETQILPLHTLSHEPAVGFAADAAARYSSTLGVAAVTYGAG 95 (565)
T ss_dssp CCSCCCBHHHHHHHHHHHTTCCCEEECCCGGGHHHHHHHHHHCSSCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTTHH
T ss_pred cCCCCcCHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHHHHhCCCeEEEECCCCC
Confidence 4467799999999999999999999999999999999997654 689999999999999999999999999999999999
Q ss_pred hhhhhHHHhhcccCCCcEEEEecCCCCCcCccCCC-----cccc-hhhhcccccceeccCCCcccHHHHHHHHHHHhhcC
Q psy14416 83 LLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGF-----QECP-QVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFG 156 (1065)
Q Consensus 83 ~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~-----Q~~d-q~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~ 156 (1065)
++|+++||++|+.+++|||+|+|+++....+++.+ |++| |.+++++++||++++++++++++.+++|++.|.++
T Consensus 96 ~~N~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~ 175 (565)
T 2nxw_A 96 AFNMVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKEITVAQARLDDPAKAPAEIARVLGAARAQ 175 (565)
T ss_dssp HHTTHHHHHHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHTTSCSCEEECCCTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHhhheEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999998887764 6788 99999999999999999999999999999999875
Q ss_pred CCcc
Q psy14416 157 KPGR 160 (1065)
Q Consensus 157 rpGP 160 (1065)
|||
T Consensus 176 -~GP 178 (565)
T 2nxw_A 176 -SRP 178 (565)
T ss_dssp -TCC
T ss_pred -CCC
Confidence 477
No 43
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=100.00 E-value=4.4e-38 Score=381.63 Aligned_cols=150 Identities=19% Similarity=0.233 Sum_probs=138.5
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchh
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 84 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~ 84 (1065)
++.|+++++|++.|+++||++|||+||+.+++|+++|.+. +|++|.++||++|+|||+||+|+|| ++||++|+|||++
T Consensus 2 ~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg-~~v~~~tsGpG~~ 80 (552)
T 1ovm_A 2 RTPYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKG-FAALLTTFGVGEL 80 (552)
T ss_dssp -CCCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHH
T ss_pred CCccCHHHHHHHHHHHcCCCEEEECCChhHHHHHHHHhcCCCceEEeeCcHHHHHHHHHHHHHhhC-CcEEEEccCCcHH
Confidence 3468999999999999999999999999999999999864 6999999999999999999999999 9999999999999
Q ss_pred hhhHHHhhcccCCCcEEEEecCCCCCcC----------ccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhh
Q psy14416 85 HTFGGMANAQINCWPMLVIGGSCAQDHE----------GIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLST 154 (1065)
Q Consensus 85 N~l~gla~A~~~~~Pll~Isg~~~~~~~----------g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~ 154 (1065)
|+++|+++|+.+++|||+|+|+++.... +.+.+| ||.+++++++||++++++ +++++.+++|++.|.
T Consensus 81 N~~~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~q--~~~~~~~~~tk~~~~v~~-~~~~~~i~~A~~~a~ 157 (552)
T 1ovm_A 81 SAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFR--HFYHMSEPITVAQAVLTE-QNACYEIDRVLTTML 157 (552)
T ss_dssp HTHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCS--HHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCEEEEECCCCHHHHhcccccccccCCCcHH--HHHHHHHhheeEEEEEcc-ccHHHHHHHHHHHHH
Confidence 9999999999999999999999997654 345677 488999999999999999 999999999999998
Q ss_pred cCCCcc
Q psy14416 155 FGKPGR 160 (1065)
Q Consensus 155 ~~rpGP 160 (1065)
++| ||
T Consensus 158 ~~~-GP 162 (552)
T 1ovm_A 158 RER-RP 162 (552)
T ss_dssp HHT-CC
T ss_pred hCC-CC
Confidence 764 77
No 44
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=100.00 E-value=1.1e-37 Score=379.40 Aligned_cols=150 Identities=18% Similarity=0.234 Sum_probs=137.2
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 86 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~ 86 (1065)
+|+++|+|++.|+++||++|||+||+.+++|+++|.+. +|++|.++||++|+|||+||+|+|| |+||++|+|||++|+
T Consensus 24 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~GyAr~tG-~~v~~~tsGpG~~N~ 102 (570)
T 2vbf_A 24 MYTVGDYLLDRLHELGIEEIFGVPGDYNLQFLDQIISREDMKWIGNANELNASYMADGYARTKK-AAAFLTTFGVGELSA 102 (570)
T ss_dssp CCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHH
T ss_pred cCCHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhcCCCCeEECcCcHHHHHHHHHHHHHHhC-CeEEEEcCCCCHHHH
Confidence 47999999999999999999999999999999999864 7999999999999999999999999 999999999999999
Q ss_pred hHHHhhcccCCCcEEEEecCCCCCcCccCC--Cc-----cc-chhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCC
Q psy14416 87 FGGMANAQINCWPMLVIGGSCAQDHEGIGG--FQ-----EC-PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKP 158 (1065)
Q Consensus 87 l~gla~A~~~~~Pll~Isg~~~~~~~g~~~--~Q-----~~-dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rp 158 (1065)
++||++|+.+++|||+|+|+++....+++. +| ++ +|.+++++++||++++++ +++++.+++|++.|.++|
T Consensus 103 ~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~-~~~~~~l~~A~~~A~~~~- 180 (570)
T 2vbf_A 103 INGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLTA-ENATYEIDRVLSQLLKER- 180 (570)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeeccccchHHHHHHhhhhEEEEEEECc-ccHHHHHHHHHHHHhhCC-
Confidence 999999999999999999999987665443 33 23 488999999999999999 999999999999998654
Q ss_pred cc
Q psy14416 159 GR 160 (1065)
Q Consensus 159 GP 160 (1065)
||
T Consensus 181 GP 182 (570)
T 2vbf_A 181 KP 182 (570)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 45
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=99.48 E-value=8.2e-15 Score=150.24 Aligned_cols=130 Identities=16% Similarity=0.213 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCc--cc--ccHH-------HH-
Q psy14416 486 IAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHP--NC--VSAA-------RT- 553 (1065)
Q Consensus 486 ~~~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hp--l~--lg~~-------~~- 553 (1065)
..++++++++|++||||+|++|+++.++++.+++++|+|++|+||++|.++||.++++|| ++ +|.. .+
T Consensus 21 ~~~v~~aa~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~iPV~~t~~gkg~~~~~hp~~~~~~~G~~G~~~~~~~~~ 100 (170)
T 3cf4_G 21 AVSPEMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAATGSSLAVLADKDVDAKYINAHMLGFYLTDPKWP 100 (170)
T ss_dssp ECCHHHHHHHHHHCSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECTTTHHHHTTSSSCEEECCHHHHHHHTTCTTCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCccchhHHHHHHHHHHHhCCCEEECcccCcccCCCChhhhcceeeeccccCChhhhh
Confidence 345899999999999999999999988888999999999999999999999999999999 99 7742 23
Q ss_pred --hhhcCCCEEEEeCCcc--ccccccCCCccccCCCeEEEecCChh-hcccccccceEEEcCHHHHHHHHHHhh
Q psy14416 554 --HALQNADLVLLLGARL--NWILHFGRAPRFKSNVKIIQVDLNAE-ELHNSVQAAVAIQSDVRLTVQQLKQML 622 (1065)
Q Consensus 554 --~al~~aDlVI~iG~~~--~~~~~~g~~~~~~~~~~iI~Vd~d~~-~~~~~~~~~~~I~~D~~~~L~~L~~~l 622 (1065)
+++++||+||.+|+++ ++..+..+. .+.+ .++|+++.+.. ..+..+ ..+ ..+++++.|.+.+
T Consensus 101 ~~~~~~~aDlvl~iG~~~~~~~~~t~~~~-~~~~-~~iI~i~~~~~~~~~~~~-~~l----~~~~~l~~L~~~~ 167 (170)
T 3cf4_G 101 GLDGNGNYDMIITIGFKKFYINQVLSAAK-NFSN-LKTIAIERGYIQNATMSF-GNL----SKADHYAALDELI 167 (170)
T ss_dssp CSSSSCCCSEEEEESCCHHHHHHHHHHHH-HHCC-CCEEECSSSCCTTSSEEC-CCC----CHHHHHHHHHHHH
T ss_pred HHHHhhcCCEEEEECCccCcccccccccc-ccCC-CeEEEECCCcccchhhhh-ccC----CHHHHHHHHHHHH
Confidence 6688999999999999 766544332 2334 67775554321 111111 111 4577887776654
No 46
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=99.37 E-value=3.2e-14 Score=145.54 Aligned_cols=101 Identities=22% Similarity=0.316 Sum_probs=81.1
Q ss_pred HHHH-HHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCC-CC-c--cccc--HHHHhhh-----
Q psy14416 489 LKQA-SRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPD-AH-P--NCVS--AARTHAL----- 556 (1065)
Q Consensus 489 v~~~-ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~-~h-p--l~lg--~~~~~al----- 556 (1065)
++++ +++|++||||+|++|+ +..+++.++|++|+|+ ++||++|.+++|.+++ +| | +.+| ...+...
T Consensus 24 i~~a~a~lI~~AkRPvIl~Gg-v~~~~A~~eL~~~ae~-~iPVvtT~~g~g~~~~~~~~p~~~~~G~~~~g~~~~~~~~~ 101 (174)
T 1ytl_A 24 KGKPVANMIKKAKRPLLIVGP-DMTDEMFERVKKFVEK-DITVVATGSAITRFIDAGLGEKVNYAVLHELTQFLLDPDWK 101 (174)
T ss_dssp CHHHHHHHHHHCSSEEEEECS-CCCHHHHHHHHHHHTS-SSEEEEETTHHHHHHHTTCGGGSEEECHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHcCCCCEEEECC-CCCccHHHHHHHHHHc-CCCEEEcccccCcCCCCCCCccccccccHHHHHHhhhhhhh
Confidence 5788 9999999999999999 9888889999999999 9999999999999999 88 8 5566 3334333
Q ss_pred -----cCCCEEEEeCCccccccc-cCCCccccCCCeEEEec
Q psy14416 557 -----QNADLVLLLGARLNWILH-FGRAPRFKSNVKIIQVD 591 (1065)
Q Consensus 557 -----~~aDlVI~iG~~~~~~~~-~g~~~~~~~~~~iI~Vd 591 (1065)
++|||||.+|+++++... .+.+..|.+++++||||
T Consensus 102 ~~~~~~~aDLvI~iG~rf~~~~~~t~~~~~fap~akii~Id 142 (174)
T 1ytl_A 102 GFDGQGNYDLVLMLGSIYYHGSQMLAAIKNFAPHIRALAID 142 (174)
T ss_dssp CTTSSCCCSEEEEESCCHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred hhcccCCCCEEEEECCcCCccccccccccccCCCCeEEEeC
Confidence 899999999999973221 12223344678899875
No 47
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=99.33 E-value=3.4e-12 Score=147.80 Aligned_cols=163 Identities=17% Similarity=0.115 Sum_probs=125.3
Q ss_pred ccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc----CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccc
Q psy14416 264 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGP 339 (1065)
Q Consensus 264 ~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~----~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGp 339 (1065)
...+++.+++++.+.+.|++++||.||++.+++.+.+.+ .+++++.+.||.+|..||.|+++..+| ++..|+||
T Consensus 20 ~~~~~GneAva~~~~~ag~~~v~~yPgtP~t~i~~~l~~~~~~~g~~~i~~e~E~~a~~~a~Gaa~aG~r--~~~~ts~~ 97 (395)
T 1yd7_A 20 PDFIQGDEAIARAAILAGCRFYAGYPITPASEIFEAMALYMPLVDGVVIQMEDEIASIAAAIGASWAGAK--AMTATSGP 97 (395)
T ss_dssp EEEEEHHHHHHHHHHHHTCCEEEECCBTTTBCHHHHHHHHGGGGTCEEEECSCHHHHHHHHHHHHHTTCC--EEEEEETT
T ss_pred eEEeEHHHHHHHHHHHcCCCEEEEEECcchHHHHHHHHHhhhhcCcEEEEeCCHHHHHHHHHHHHHhCCc--EEEEeCch
Confidence 346799999999999999999999999999999888743 579999999999999999999999888 55689999
Q ss_pred cccccccccccccccCcceEeecCCCccCCCCCCCCCcc-Chh--hhhc--ccccEEeeCCChhhHHHHHHHHHHHhhcC
Q psy14416 340 GLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQEC-PQV--ELAR--PYCKYSARPPNIHLIGQHVEKAVRLSTFG 414 (1065)
Q Consensus 340 G~~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~i-dQ~--~l~~--~~~k~s~~l~~~~~i~~~i~~A~~~A~~~ 414 (1065)
|+.+++.++.+|...++|+|+++++++....+.+..++- |.. ...+ ++.++.....+++++...+..|++.|...
T Consensus 98 G~~~~~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~~~~~sd~~~~~~~~~g~~g~~vl~p~~~qea~~l~~~A~~lA~~~ 177 (395)
T 1yd7_A 98 GFSLMQENIGYAVMTETPVVIVDVQRSGPSTGQPTLPAQGDIMQAIWGTHGDHSLIVLSPSTVQEAFDFTIRAFNLSEKY 177 (395)
T ss_dssp HHHHHTTTCC----CCCCEEEEEEC--------------------------CCCCEEECCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCcccchhHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998776554444443 221 2222 56788899999999999999999999866
Q ss_pred CCCEEEEecChhhhh
Q psy14416 415 KPGVSYLDFPANLLA 429 (1065)
Q Consensus 415 ~~GPV~L~iP~Dv~~ 429 (1065)
+ .||.+.+|.++..
T Consensus 178 ~-~PVi~~~~~~l~h 191 (395)
T 1yd7_A 178 R-TPVILLTDAEVGH 191 (395)
T ss_dssp T-SEEEEEECHHHHH
T ss_pred C-CCEEEEcchhHhC
Confidence 5 8999999988643
No 48
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=99.28 E-value=5.9e-12 Score=145.80 Aligned_cols=155 Identities=17% Similarity=0.157 Sum_probs=118.1
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh----CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCc
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGP 81 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~----~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GP 81 (1065)
...|++.|++++.+.+.|++.+||+||+...++.+.|.+ .+++++.++||.+|+.||.|+++..+| +|..++||
T Consensus 20 ~~~~~GneAva~~~~~ag~~~v~~yPgtP~t~i~~~l~~~~~~~g~~~i~~e~E~~a~~~a~Gaa~aG~r--~~~~ts~~ 97 (395)
T 1yd7_A 20 PDFIQGDEAIARAAILAGCRFYAGYPITPASEIFEAMALYMPLVDGVVIQMEDEIASIAAAIGASWAGAK--AMTATSGP 97 (395)
T ss_dssp EEEEEHHHHHHHHHHHHTCCEEEECCBTTTBCHHHHHHHHGGGGTCEEEECSCHHHHHHHHHHHHHTTCC--EEEEEETT
T ss_pred eEEeEHHHHHHHHHHHcCCCEEEEEECcchHHHHHHHHHhhhhcCcEEEEeCCHHHHHHHHHHHHHhCCc--EEEEeCch
Confidence 345899999999999999999999999999999988853 579999999999999999999999888 55679999
Q ss_pred chhhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccch-hhh--cc--cccceeccCCCcccHHHHHHHHHHHhhcC
Q psy14416 82 GLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQ-VEL--AR--PYCKYSARPPNIHLIGQHVEKAVRLSTFG 156 (1065)
Q Consensus 82 G~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq-~~l--~~--~itk~~~~v~~~~~i~~~l~~A~~~A~~~ 156 (1065)
|+.++..+|..|...++|+++++++.+....+...+++-++ ..+ .. ++.+......+++++...+..|++.|...
T Consensus 98 G~~~~~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~~~~~sd~~~~~~~~~g~~g~~vl~p~~~qea~~l~~~A~~lA~~~ 177 (395)
T 1yd7_A 98 GFSLMQENIGYAVMTETPVVIVDVQRSGPSTGQPTLPAQGDIMQAIWGTHGDHSLIVLSPSTVQEAFDFTIRAFNLSEKY 177 (395)
T ss_dssp HHHHHTTTCC----CCCCEEEEEEC--------------------------CCCCEEECCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCcccchhHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988776655444444422 121 22 56788999999999999999999999877
Q ss_pred CCccccc
Q psy14416 157 KPGRSLL 163 (1065)
Q Consensus 157 rpGP~~l 163 (1065)
+ .|+++
T Consensus 178 ~-~PVi~ 183 (395)
T 1yd7_A 178 R-TPVIL 183 (395)
T ss_dssp T-SEEEE
T ss_pred C-CCEEE
Confidence 6 88775
No 49
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=99.11 E-value=3.9e-10 Score=138.25 Aligned_cols=240 Identities=14% Similarity=0.091 Sum_probs=144.7
Q ss_pred cccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcc--ccHHHHHHhhhcCCCEEEEEEcCCeeeeccccchh---
Q psy14416 174 AGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFG--FSGMELETLVRYRLPVILVIVNNNGIYGGFDEATY--- 248 (1065)
Q Consensus 174 ~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~--m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~--- 248 (1065)
....|+||+++|+|+|+++|.++..++++|||++|||+|+ |+.++|.+++++++|+++| +||++| +++.+..
T Consensus 119 ~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~I-vnnN~~--~i~~~~~~~~ 195 (629)
T 2o1x_A 119 AITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMGRKMLIV-LNDNEM--SISENVGAMN 195 (629)
T ss_dssp CSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHHCCSEEEE-EEECSB--SSSBCCSSHH
T ss_pred CcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHhhCCCEEEE-EECCCC--CCCCChhHHH
Confidence 3457999999999999999987778999999999999999 7789999999999997655 555566 4322110
Q ss_pred --------------------------------------hhh---------hhhhccCCCcccccCccHHHHHHHHHHhc-
Q psy14416 249 --------------------------------------AWL---------DIIKKSNMSEDYDEELSANQVIAQALKFQ- 280 (1065)
Q Consensus 249 --------------------------------------~~~---------~l~~~~g~~~~~~~~~~~~~~l~~~L~~~- 280 (1065)
++. +++..++.......+-...+.|.++|++.
T Consensus 196 ~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~ 275 (629)
T 2o1x_A 196 KFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFFDPASVNPFAAMGVRYVGPVDGHNVQELVWLLERLV 275 (629)
T ss_dssp HHC---------------------------------------------CCCTTGGGTCEEEEEEESSCHHHHHHHHHHHT
T ss_pred HHHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhhcCcccchHHHhcCCeEEeeECCcCHHHHHHHHHHHH
Confidence 111 11112221110000001223333333321
Q ss_pred ---Cce-----------------------------------------------------------EEEee----cC-Cch
Q psy14416 281 ---GIE-----------------------------------------------------------YVFGI----VG-IPV 293 (1065)
Q Consensus 281 ---GV~-----------------------------------------------------------~vfg~----pG-~~~ 293 (1065)
|-. .++.+ ++ ...
T Consensus 276 ~~~~P~lI~v~t~kg~G~~~~e~~~~~~H~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~~~ 355 (629)
T 2o1x_A 276 DLDGPTILHIVTTKGKGLSYAEADPIYWHGPAKFDPATGEYVPSSAYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSGL 355 (629)
T ss_dssp TSSSEEEEEEECCTTTTCHHHHHCTTGGGSCCSBCTTTCCBCCCCCCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTC
T ss_pred hcCCCEEEEEEEecCCCCChhHcCCcccccCccCCcCcCcccccchHHHHHHHHHHHHHHhhhCcCEEEEeccccCCcCh
Confidence 100 11111 11 111
Q ss_pred hhhHHHhhcCCceEEE-ccCCchHHHHHHHHHHHhCCCeEEEEeccccccccccc-cccccccCcceEeecCCCccCCCC
Q psy14416 294 IELAMACQQEGIHYIG-MRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGG-MANAQINCWPMLVIGGSCAQDHEG 371 (1065)
Q Consensus 294 ~~l~~al~~~~i~~i~-~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~a-v~eA~~~~vPLlvItg~~p~~~~g 371 (1065)
..+...+ .=|++. ...|+++.-+|.|.|.. |.-. +..+..+.+.-++-- +..+-..+.|++++......--.+
T Consensus 356 ~~f~~~~---~~r~~~~gIaE~~~~~~a~G~A~~-G~rp-~~~~~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~~g~d 430 (629)
T 2o1x_A 356 VEFSRVH---PHRYLDVGIAEEVAVTTAAGMALQ-GMRP-VVAIYSTFLQRAYDQVLHDVAIEHLNVTFCIDRAGIVGAD 430 (629)
T ss_dssp HHHHHHC---GGGEEECCSCHHHHHHHHHHHHHT-TCEE-EEEEEHHHHGGGHHHHHHTTTTTTCCCEEEEESBBCCCTT
T ss_pred HHHHHhc---CcceEeccccHHHHHHHHHHHHHc-CCEE-EEEecHHHHHHHHHHHHHHHhhcCCCEEEEEECCccCCCC
Confidence 1111111 124554 45899999999999986 5423 334466665433322 455677899999887443332111
Q ss_pred CCCCCccChhhhhcccccEEe-eCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 372 IGGFQECPQVELARPYCKYSA-RPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 372 ~ga~Q~idQ~~l~~~~~k~s~-~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
-..+|.+.+..+++.+..+.. ...++.++...+..|++. ++||+|-+|..
T Consensus 431 G~tH~~~~d~a~~r~iP~l~v~~P~d~~e~~~~~~~a~~~-----~~Pv~i~~~r~ 481 (629)
T 2o1x_A 431 GATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQTH-----DGPFAIRYPRG 481 (629)
T ss_dssp CTTTCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHS-----SSCEEEECCSS
T ss_pred CcccCccHHHHHHHccCCcEEEecCCHHHHHHHHHHHHhC-----CCCEEEEecCC
Confidence 235666777799999887754 566777888888888764 58999999854
No 50
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=99.01 E-value=3e-09 Score=130.27 Aligned_cols=242 Identities=14% Similarity=0.146 Sum_probs=140.3
Q ss_pred cccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcc--ccHHHHHHhhhcCCCEEEEEEcCCeeeeccccchhh----
Q psy14416 176 TFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFG--FSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYA---- 249 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~--m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~---- 249 (1065)
..|+||+++|.|+|+++|.++..++++|||++|||+|+ |+.++|.+++++++|+++|+ ||++| +++.+...
T Consensus 119 ~~G~~G~gl~~A~G~AlA~~~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~vv-nnN~~--~i~~~~~~~~~~ 195 (621)
T 2o1s_A 119 SVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMAFEAMNHAGDIRPDMLVIL-NDNEM--SISENVGALNNH 195 (621)
T ss_dssp CCSSSSCHHHHHHHHHHHHHHHTSCCCEEEEEETTGGGSHHHHHHHHHHHHHCCSEEEEE-EECC---------------
T ss_pred CCcccchHHHHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHhhCCCEEEEE-eCCCc--ccCCCcchHHHH
Confidence 37999999999999999987778999999999999999 66889999999999987665 55566 44321110
Q ss_pred ---------h----------------------------------hhhhhccCCCcccccCccHHHHHHHHHHh----cCc
Q psy14416 250 ---------W----------------------------------LDIIKKSNMSEDYDEELSANQVIAQALKF----QGI 282 (1065)
Q Consensus 250 ---------~----------------------------------~~l~~~~g~~~~~~~~~~~~~~l~~~L~~----~GV 282 (1065)
| ..++..++.......+-...+.|.++|++ .|-
T Consensus 196 ~~~~~~~~~y~~~~~~~~~~~~~~p~~~~~~~r~~~~~~~~~~p~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~~~gP 275 (621)
T 2o1s_A 196 LAQLLSGKLYSSLREGGKKVFSGVPPIKELLKRTEEHIKGMVVPGTLFEELGFNYIGPVDGHDVLGLITTLKNMRDLKGP 275 (621)
T ss_dssp -------------------------------------------CHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHSCSE
T ss_pred HHhhhcchhHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccChhhHHHHCCCeEeeeeCCCCHHHHHHHHHHHHHcCCC
Confidence 0 01111111110000011123344444432 221
Q ss_pred e--EEE-----eec------------------------CCc-hhhhHH----Hh----hc-CCc----------------
Q psy14416 283 E--YVF-----GIV------------------------GIP-VIELAM----AC----QQ-EGI---------------- 305 (1065)
Q Consensus 283 ~--~vf-----g~p------------------------G~~-~~~l~~----al----~~-~~i---------------- 305 (1065)
. ++. |.+ +.. ...+.+ ++ ++ +.+
T Consensus 276 ~lI~v~t~kg~G~~~~e~~~~~~H~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~~~~~~ 355 (621)
T 2o1s_A 276 QFLHIMTKKGRGYEPAEKDPITFHAVPKFDPSSGCLPKSSGGLPSYSKIFGDWLCETAAKDNKLMAITPAMREGSGMVEF 355 (621)
T ss_dssp EEEEEECCCTTCCCCC--------------------------CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHH
T ss_pred EEEEEEEecccCCChhhcCchhccCCCCCCCCcCcccccccchHHHHHHHHHHHHHHHhhCcCEEEEeCcccCCcChHHH
Confidence 1 010 111 000 001111 11 11 111
Q ss_pred ------eEEE-ccCCchHHHHHHHHHHHhCCCeEEEEeccccccccccc-cccccccCcceEeecCCCccCCCCCCCCCc
Q psy14416 306 ------HYIG-MRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGG-MANAQINCWPMLVIGGSCAQDHEGIGGFQE 377 (1065)
Q Consensus 306 ------~~i~-~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~a-v~eA~~~~vPLlvItg~~p~~~~g~ga~Q~ 377 (1065)
|++. ...|+++.-+|.|+|.. |. ..+..+.++.+.-++-- +..+-..+.|++++.......-..-..+|.
T Consensus 356 ~~~~~~r~~~~gIaE~~~~~~a~G~A~~-G~-rp~~~~~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~~g~~G~tH~~ 433 (621)
T 2o1s_A 356 SRKFPDRYFDVAIAEQHAVTFAAGLAIG-GY-KPIVAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQG 433 (621)
T ss_dssp HHHCTTTEEECCSCHHHHHHHHHHHHHT-TC-EEEEEEETTGGGGGHHHHHHTTTTTTCCCEEEEESCBCCCTTCGGGCB
T ss_pred HHhCCCceEecCcCHHHHHHHHHHHHHC-CC-EEEEEehHhHHHHHHHHHHHHHHhcCCCEEEEEECCccCCCCCCccCc
Confidence 3554 45899999999999986 54 33334477766433322 455677899999887443332111124565
Q ss_pred cChhhhhcccccEE-eeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 378 CPQVELARPYCKYS-ARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 378 idQ~~l~~~~~k~s-~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
+.+..+++.+..+. +...++.++...+..|++.+ .+||+|-.|..
T Consensus 434 ~~d~~~~~~iP~l~v~~P~d~~e~~~~l~~a~~~~----~~Pv~i~~~r~ 479 (621)
T 2o1s_A 434 AFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYN----DGPSAVRYPRG 479 (621)
T ss_dssp CSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHCC----SSCEEEECCSS
T ss_pred hHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHHcC----CCCEEEEeCCC
Confidence 66678888887764 45667788888888777643 58999999854
No 51
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=98.99 E-value=2.8e-09 Score=129.90 Aligned_cols=243 Identities=16% Similarity=0.156 Sum_probs=148.6
Q ss_pred cccCCCcchhHHHHHHhhhcccC-CCCeEEEEeCCCCcc--ccHHHHHHhhhcCCCEEEEEEcCCeeeecccc------c
Q psy14416 176 TFGTMGVGLGFALAAALYCNHYA-PGKRVVCVQGDSAFG--FSGMELETLVRYRLPVILVIVNNNGIYGGFDE------A 246 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~~-p~rrvV~l~GDGsf~--m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~------~ 246 (1065)
..|+||+++|.|+|+++|....+ ++++|+|++|||+++ |+.++|.++.++++|.+++|+||++| +++. .
T Consensus 119 ~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~~~Eal~~A~~~~l~~livi~nnN~~--~i~~~~~~~~~ 196 (616)
T 3mos_A 119 ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRL--GQSDPAPLQHQ 196 (616)
T ss_dssp CCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCTTEEEEEEECSB--CSSSBCTTTTC
T ss_pred cccccCCccHHHHHHHHHHHHhCCCCCEEEEEECccccccCcHHHHHHHHHHcCCCcEEEEEECCCC--CCcCCcccccC
Confidence 46899999999999999965433 369999999999999 88999999999999999999998887 1100 0
Q ss_pred hhhhhhhhhccCCC---------------------------------------cccc-----------------------
Q psy14416 247 TYAWLDIIKKSNMS---------------------------------------EDYD----------------------- 264 (1065)
Q Consensus 247 ~~~~~~l~~~~g~~---------------------------------------~~~~----------------------- 264 (1065)
.+++.+.+..++.. ++..
T Consensus 197 ~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~~~~~P~lI~v~T~kg~G~~~~e~~~~~Hg~~~~~~~~~~~~~~~~~~~ 276 (616)
T 3mos_A 197 MDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQAKHQPTAIIAKTFKGRGITGVEDKESWHGKPLPKNMAEQIIQEIYSQI 276 (616)
T ss_dssp HHHHHHHHHHTTCEEEEEETTCHHHHHHHHHSCCSSCEEEEEECCTTTTSTTTTTCSSCTTCCCCHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhcCCCCEEEEEEEecccccccccCchhhcCCCCCHHHHHHHHHHHHHHH
Confidence 01111111110000 0000
Q ss_pred ----------------------------------cCccHHHHHHHHHH---hcCceEEEeecCCchhhhHHHhhc-CCce
Q psy14416 265 ----------------------------------EELSANQVIAQALK---FQGIEYVFGIVGIPVIELAMACQQ-EGIH 306 (1065)
Q Consensus 265 ----------------------------------~~~~~~~~l~~~L~---~~GV~~vfg~pG~~~~~l~~al~~-~~i~ 306 (1065)
..+..-+++.++|. +..=+-+.+.+..........+.+ ..=|
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~r~a~~~~L~~l~~~d~~vv~~~aD~~~~~~~~~~~~~~p~R 356 (616)
T 3mos_A 277 QSKKKILATPPQEDAPSVDIANIRMPSLPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSEIFKKEHPDR 356 (616)
T ss_dssp CCCCCCCCBCCCCCCCCCCCSCCCCSSCCCCCTTCBCCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHSHHHHHHHCGGG
T ss_pred HhhhhhCcCccchhhhhhhhhccccCCCcccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCcCCCcchhhHHHhCCCC
Confidence 00000022222221 122222333332221122222322 1125
Q ss_pred EEE-ccCCchHHHHHHHHHHHhCCCeEEEEeccccccccccccccccccCcceEeecCCCccCC-CCCCCCCccChhhhh
Q psy14416 307 YIG-MRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDH-EGIGGFQECPQVELA 384 (1065)
Q Consensus 307 ~i~-~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~eA~~~~vPLlvItg~~p~~~-~g~ga~Q~idQ~~l~ 384 (1065)
++. ...|+++.-+|.|+|.. |...++..|.++.+.-++..|..+...+.|++++........ .+-..+|.+.+..++
T Consensus 357 ~~d~gIaE~~~v~~a~G~A~~-G~~~~~~~~f~~Fl~~a~dqi~~~a~~~~~v~~v~~~~g~~~G~dG~tH~~~ed~a~l 435 (616)
T 3mos_A 357 FIECYIAEQNMVSIAVGCATR-NRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIGEDGPSQMALEDLAMF 435 (616)
T ss_dssp EEECCSCHHHHHHHHHHHHGG-GCCEEEEEEEGGGGGGGHHHHHHHHHTTCCEEEEEESBSGGGCTTCGGGCBSSHHHHH
T ss_pred eEEcCccHHHHHHHHHHHHHc-CCCCEEEEehHHHHHHHHHHHHHHHHhCCCeEEEEECCCccccCCCCcccCHHHHHHh
Confidence 664 46999999999999975 443455678899998888999888889999887643222211 111246778888999
Q ss_pred cccccEEe-eCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 385 RPYCKYSA-RPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 385 ~~~~k~s~-~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
+.+..... ...++.++...++.|+ . .+||++|..|.+
T Consensus 436 ~~iP~l~V~~P~d~~e~~~~l~~a~----~-~~gp~~ir~~r~ 473 (616)
T 3mos_A 436 RSVPTSTVFYPSDGVATEKAVELAA----N-TKGICFIRTSRP 473 (616)
T ss_dssp HTSTTEEEECCCSHHHHHHHHHHHH----T-CCSEEEEECCSS
T ss_pred cCCCCCEEEecCCHHHHHHHHHHHH----h-cCCCEEEEEeCC
Confidence 99887654 4456666655555444 2 359999998854
No 52
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=98.98 E-value=4.2e-10 Score=146.08 Aligned_cols=152 Identities=11% Similarity=-0.003 Sum_probs=109.8
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh---C---C-----CeEEEecChhhHHHHHHHHHHhcCCcEE
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ---E---G-----IHYIGMRNEQAACYAAQAIGYLTKKPGV 74 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~---~---~-----i~~v~~rhE~~A~~mA~gyar~tg~~gv 74 (1065)
+..|++.|+++... ..|++.+++.|+++..++.+.+.+ . + ..++...+|.+|..||.|.+. +|...+
T Consensus 4 ~~~~~GNeAvA~~a-~ag~~~~~~YPITPstei~e~l~~~~~~g~~~~~G~~~~v~~~esE~aA~~aaiGAa~-aGaR~~ 81 (1231)
T 2c42_A 4 MMTTDGNTATAHVA-YAMSEVAAIYPITPSSTMGEEADDWAAQGRKNIFGQTLTIREMQSEAGAAGAVHGALA-AGALTT 81 (1231)
T ss_dssp EEEEEHHHHHHHHH-HHHCSEEEECCCTTTHHHHHHHHHHHHHTCCCTTSCCCEEEECSSHHHHHHHHHHHHH-TTCCEE
T ss_pred eEEccHHHHHHHHH-HHCCCEEEEECCCCchHHHHHHHHHHHcCCchhcCCceEEEecCChHHHHHHHHHHHH-cCChHh
Confidence 45689999999986 779999999999999999988841 1 2 489999999999999999665 565555
Q ss_pred EEEeCCcchhhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccce-eccCCCcccHHHHHHHHHHHh
Q psy14416 75 CLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKY-SARPPNIHLIGQHVEKAVRLS 153 (1065)
Q Consensus 75 ~~~t~GPG~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~-~~~v~~~~~i~~~l~~A~~~A 153 (1065)
+ .|+|||+.-+...|..+...+.|+++...+.+....+...+.+-++ .++.-.+.| .....++.++...+..|+..|
T Consensus 82 t-~Ts~~Gl~lm~e~l~~~ag~~~P~Vi~va~R~g~~~glsi~~~hsd-~~~ar~~G~~vl~pss~QEa~dl~~~Af~lA 159 (1231)
T 2c42_A 82 T-FTASQGLLLMIPNMYKISGELLPGVFHVTARAIAAHALSIFGDHQD-IYAARQTGFAMLASSSVQEAHDMALVAHLAA 159 (1231)
T ss_dssp E-EECHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSSSBCCSCCSHH-HHTTTTSSCEEEECCSHHHHHHHHHHHHHHH
T ss_pred h-hccHHHHHHHHHHHHHHhCCCCCEEEEECCCCccCCCCcCCCchhh-HHHHhcCCcEEEECCCHHHHHHHHHHHHHHH
Confidence 4 4899999999999977666789999999887654333222111111 122222333 344567788888888998888
Q ss_pred hcCCCcccc
Q psy14416 154 TFGKPGRSL 162 (1065)
Q Consensus 154 ~~~rpGP~~ 162 (1065)
...+ -|++
T Consensus 160 ek~~-~PVi 167 (1231)
T 2c42_A 160 IESN-VPFM 167 (1231)
T ss_dssp HHHC-CCEE
T ss_pred HHcC-CCEE
Confidence 7543 4433
No 53
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=98.89 E-value=3.4e-09 Score=122.54 Aligned_cols=84 Identities=15% Similarity=0.158 Sum_probs=66.8
Q ss_pred CCCcccccccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccH--HHHHHhhhcCCCEEEEE
Q psy14416 156 GKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSG--MELETLVRYRLPVILVI 233 (1065)
Q Consensus 156 ~rpGP~~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~--~eL~t~vr~~lpivivV 233 (1065)
++.+|.|+...... + . ...|+||+++|.|+|+++|.+...++++|||++|||+|+|.. ++|.++.++++|+++||
T Consensus 143 G~~~~~H~~~~~~~-~-~-~~~g~lG~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv 219 (400)
T 2bfd_A 143 GRQMPVHYGCKERH-F-V-TISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFC 219 (400)
T ss_dssp TCSCSSCCCBTTTT-B-C-CCCSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCcCCcccccC-c-c-ccCccccccccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEE
Confidence 45566665432211 2 2 235999999999999999977667799999999999999987 99999999999999999
Q ss_pred EcCCeeeecccc
Q psy14416 234 VNNNGIYGGFDE 245 (1065)
Q Consensus 234 ~NN~gy~~g~~~ 245 (1065)
.|| +| +++.
T Consensus 220 ~NN-~~--~i~~ 228 (400)
T 2bfd_A 220 RNN-GY--AIST 228 (400)
T ss_dssp EEC-SE--ETTE
T ss_pred ECC-ce--eeee
Confidence 998 56 5543
No 54
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=98.85 E-value=1.3e-09 Score=125.03 Aligned_cols=92 Identities=17% Similarity=0.178 Sum_probs=69.5
Q ss_pred EEeccccccCcc-hhh-HHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHH
Q psy14416 931 IVNNNGIYGGFD-ETT-YASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMM 1008 (1065)
Q Consensus 931 ~~~gd~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1065)
+++|||+| ++. .++ +.++ .++++|+++||.|| + |+..... .. ..+..||.+++
T Consensus 171 ~i~GDGa~-~~G~~~Eal~~A-----~~~~lpvi~vv~NN-~-~gi~~~~--~~---------------~~~~~d~~~~a 225 (367)
T 1umd_A 171 CTFGDGAT-SEGDWYAGINFA-----AVQGAPAVFIAENN-F-YAISVDY--RH---------------QTHSPTIADKA 225 (367)
T ss_dssp EEEETGGG-GSHHHHHHHHHH-----HHTTCSEEEEEEEC-S-EETTEEH--HH---------------HCSSSCSGGGG
T ss_pred EEEccccc-ccCcHHHHHHHH-----HHhCcCEEEEEecC-C-eeeccCh--hh---------------ccCCCCHHHHH
Confidence 99999999 777 777 8888 88999977666666 5 4432110 00 01346899999
Q ss_pred HHcCCCeEeeCCHHHH------HHHHHHHHhcCCCCEEEEEEeCCC
Q psy14416 1009 AVFGHDGYLCTTVPQI------KQAMKKCLQTTTRPSLINILINPS 1048 (1065)
Q Consensus 1009 ~~~g~~~~~~~~~~~l------~~~~~~~~~~~~~~~li~~~~~~~ 1048 (1065)
++||+.+++|++.+.+ ++|++++.+. ++|+|||+.+.+.
T Consensus 226 ~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~-~gP~lIe~~t~r~ 270 (367)
T 1umd_A 226 HAFGIPGYLVDGMDVLASYYVVKEAVERARRG-EGPSLVELRVYRY 270 (367)
T ss_dssp GGTTSCEEEEETTCHHHHHHHHHHHHHHHHTT-CCCEEEEEECCCC
T ss_pred HHcCCcEEEeCCCCHHHHHHHHHHHHHHHHhc-CCCEEEEEEeecC
Confidence 9999999999987776 6677766655 8999999999773
No 55
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=98.85 E-value=1.1e-08 Score=125.72 Aligned_cols=116 Identities=13% Similarity=-0.062 Sum_probs=80.3
Q ss_pred eEEEc-cCCchHHHHHHHHHHHhCCCeEEEEeccccccccccccccccccCcceEee-cCCCccCCCCCCCCCccChhhh
Q psy14416 306 HYIGM-RNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVI-GGSCAQDHEGIGGFQECPQVEL 383 (1065)
Q Consensus 306 ~~i~~-~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~eA~~~~vPLlvI-tg~~p~~~~g~ga~Q~idQ~~l 383 (1065)
|++.+ ..|++++-+|.|+|..-|. -.+..|+.+.+.=+..++..+-..+.|++++ |.+...--.+-..+|.+.+..+
T Consensus 398 R~i~~gIaE~~~~~~a~GlA~~Gg~-~P~~~t~~~F~~~~~~air~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~ 476 (651)
T 2e6k_A 398 RYLHFGVREHAMGAILNGLNLHGGY-RAYGGTFLVFSDYMRPAIRLAALMGVPTVFVFTHDSIALGEDGPTHQPVEHLMS 476 (651)
T ss_dssp CEEECCSCHHHHHHHHHHHHHHSSC-EEEEEEEGGGGGGSHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHH
T ss_pred ceEecCcCHHHHHHHHHHHHHcCCC-EEEEEeHHHHHHHHHHHHHHHHhcCCCEEEEEECCccccCCCcCccccHHHHHH
Confidence 34443 4788999999999876423 3445666777666777787788889999988 4454432222345688888899
Q ss_pred hcccccEE-eeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 384 ARPYCKYS-ARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 384 ~~~~~k~s-~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
++.+..+. +...++.++...+..|++. ..+||+|.+|..
T Consensus 477 lr~iP~l~V~~Pad~~E~~~~l~~A~~~----~~~Pv~i~~~r~ 516 (651)
T 2e6k_A 477 LRAMPNLFVIRPADAYETFYAWLVALRR----KEGPTALVLTRQ 516 (651)
T ss_dssp HHTSTTCEEECCSSHHHHHHHHHHHHHC----CSSCEEEECCSS
T ss_pred hcCCCCcEEEecCCHHHHHHHHHHHHHc----CCCCEEEEEeCC
Confidence 99886654 4556777777777777653 258999999853
No 56
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=98.84 E-value=2.8e-09 Score=129.77 Aligned_cols=112 Identities=12% Similarity=-0.166 Sum_probs=76.2
Q ss_pred EccCCchHHHHHHHHHHHhCCCeEEEEeccccccccccccccccccCcceEeec-CCCccCCCCCCCCCccChhhhhccc
Q psy14416 309 GMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIG-GSCAQDHEGIGGFQECPQVELARPY 387 (1065)
Q Consensus 309 ~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~eA~~~~vPLlvIt-g~~p~~~~g~ga~Q~idQ~~l~~~~ 387 (1065)
.-.-|++++-+|.|+|...|...++ .|..+=+.-+...|..+-..+.|++++. .+.-.--.+-..+|.+.+..+++.+
T Consensus 387 ~GIaE~~~v~~a~GlA~~gG~~P~~-~~f~~F~~~~~~~ir~~a~~~~pv~~~~t~~g~g~G~dG~THq~~ed~a~lr~i 465 (632)
T 3l84_A 387 FGIREHAMAAINNAFARYGIFLPFS-ATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAM 465 (632)
T ss_dssp CCSCHHHHHHHHHHHHHHSSCEEEE-EEEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGGSCSSHHHHHHHS
T ss_pred eCccHHHHHHHHHHHHHcCCCEEEE-EecHHHHHHHHHHHHHHhccCCCEEEEEECCCcCCCCCCCCCCCHhHHHHHhcC
Confidence 3457889999999999874543333 3355555556667766677899999874 4443221223356888889999998
Q ss_pred ccEEe-eCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 388 CKYSA-RPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 388 ~k~s~-~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
..... ...++.++...++.|++ .+|||+|-+|..
T Consensus 466 P~l~V~~P~d~~e~~~~l~~A~~-----~~~Pv~ir~~r~ 500 (632)
T 3l84_A 466 PNFLTFRPADGVENVKAWQIALN-----ADIPSAFVLSRQ 500 (632)
T ss_dssp SSCEEECCSSHHHHHHHHHHHHH-----CSSCEEEECCSS
T ss_pred CCCEEEecCCHHHHHHHHHHHHh-----CCCCEEEEEcCC
Confidence 87644 45566777777777665 359999999854
No 57
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=98.81 E-value=2.3e-08 Score=123.13 Aligned_cols=112 Identities=13% Similarity=-0.110 Sum_probs=78.5
Q ss_pred ccCCchHHHHHHHHHHHhCCCeEEEEeccccccccccccccccccCcceEeecC-CCccCCCCCCCCCccChhhhhcccc
Q psy14416 310 MRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGG-SCAQDHEGIGGFQECPQVELARPYC 388 (1065)
Q Consensus 310 ~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~eA~~~~vPLlvItg-~~p~~~~g~ga~Q~idQ~~l~~~~~ 388 (1065)
-..|++++-+|.|+|...|...++ .|..+-+.-+..++..+-..+.|++++.. +...--.+-..+|.+.+..+++.+.
T Consensus 408 GIaE~~~v~~a~GlA~~gG~~P~~-~tf~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~~~G~dG~tHq~~edla~lr~iP 486 (669)
T 2r8o_A 408 GVREFGMTAIANGISLHGGFLPYT-STFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTP 486 (669)
T ss_dssp CSCHHHHHHHHHHHHHHSSCEEEE-EEEGGGGGTTHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTST
T ss_pred chhHHHHHHHHHHHHHcCCCeEEE-eehHHHHHHHHHHHHHHHhcCCCEEEEEeCCCcCcCCCCCccCCHHHHHHhcCCC
Confidence 447889999999999875543333 67777777778888888889999999853 3332111223568888889998886
Q ss_pred cEE-eeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 389 KYS-ARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 389 k~s-~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
... +...++.++...++.|++ ...+||+|-+|..
T Consensus 487 ~l~V~~Pad~~E~~~~l~~a~~----~~~~Pv~i~~~r~ 521 (669)
T 2r8o_A 487 NMSTWRPCDQVESAVAWKYGVE----RQDGPTALILSRQ 521 (669)
T ss_dssp TCEEECCSSHHHHHHHHHHHHH----CSSSCEEEECCSS
T ss_pred CCEEEecCCHHHHHHHHHHHHH----hCCCcEEEEeCCC
Confidence 654 445666666666666664 3358999998853
No 58
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=98.78 E-value=1.8e-08 Score=115.55 Aligned_cols=66 Identities=18% Similarity=0.187 Sum_probs=60.0
Q ss_pred cccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc-HHH-HHHhhhcCCCEEEEEEcCCeeeeccc
Q psy14416 176 TFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS-GME-LETLVRYRLPVILVIVNNNGIYGGFD 244 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~-~~e-L~t~vr~~lpivivV~NN~gy~~g~~ 244 (1065)
..|++|.++|.|+|+++|.+...++++||+++|||+|++. .+| |.++.++++|+++||.||+ | |+.
T Consensus 142 ~~g~lG~~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~-~--gi~ 209 (367)
T 1umd_A 142 VASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNF-Y--AIS 209 (367)
T ss_dssp CCSSTTTTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECS-E--ETT
T ss_pred CCchhhhhhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCC-e--eec
Confidence 4688999999999999998888999999999999999999 899 9999999999888888887 7 553
No 59
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=98.78 E-value=3.7e-09 Score=120.90 Aligned_cols=119 Identities=13% Similarity=0.014 Sum_probs=88.6
Q ss_pred ccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcch-
Q psy14416 865 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE- 943 (1065)
Q Consensus 865 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~- 943 (1065)
+.+|.+++.++ |+++|..... +++.|+ +++|||+| ++..
T Consensus 142 g~lG~~lp~Av--G~A~A~~~~~----~~~~vv---------------------------------~i~GDGa~-~~G~~ 181 (368)
T 1w85_A 142 IIIGAQYIQAA--GVALGLKMRG----KKAVAI---------------------------------TYTGDGGT-SQGDF 181 (368)
T ss_dssp CSTTHHHHHHH--HHHHHHHHTT----CSCCEE---------------------------------EEEETGGG-GSHHH
T ss_pred cccCccccHHH--HHHHHhHhhC----CCCeEE---------------------------------EEEchhhh-hhcHH
Confidence 45577777776 8888764333 577888 99999999 5532
Q ss_pred -hhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeC--C
Q psy14416 944 -TTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCT--T 1020 (1065)
Q Consensus 944 -~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~ 1020 (1065)
.++.++ .++++|+++||.|| + |+..... .......||.++|++||+.+++|+ +
T Consensus 182 ~Eal~~A-----~~~~lpvi~vv~NN-~-~gi~~~~-----------------~~~~~~~d~~~~a~a~G~~~~~VdG~D 237 (368)
T 1w85_A 182 YEGINFA-----GAFKAPAIFVVQNN-R-FAISTPV-----------------EKQTVAKTLAQKAVAAGIPGIQVDGMD 237 (368)
T ss_dssp HHHHHHH-----HHTTCCEEEEEEEC-S-EETTEEG-----------------GGTCSCSCSGGGGGGTTCCEEEEETTC
T ss_pred HHHHHHH-----HHHCcCEEEEEEcC-C-ccceecc-----------------ccccCCCCHHHHHHHCCCCEEEEcCCC
Confidence 257777 88999988888887 5 3321100 011234689999999999999998 6
Q ss_pred HHHHHHHHHHHHh---cCCCCEEEEEEeCC
Q psy14416 1021 VPQIKQAMKKCLQ---TTTRPSLINILINP 1047 (1065)
Q Consensus 1021 ~~~l~~~~~~~~~---~~~~~~li~~~~~~ 1047 (1065)
++++.++++++++ ..++|+|||+.+.+
T Consensus 238 ~~av~~a~~~A~~~~r~~~gP~lIe~~t~r 267 (368)
T 1w85_A 238 PLAVYAAVKAARERAINGEGPTLIETLCFR 267 (368)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEEeec
Confidence 9999999999986 24799999999976
No 60
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=98.72 E-value=1.3e-08 Score=116.35 Aligned_cols=67 Identities=16% Similarity=0.123 Sum_probs=59.1
Q ss_pred ccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCeeeeccc
Q psy14416 175 GTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNGIYGGFD 244 (1065)
Q Consensus 175 ~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~gy~~g~~ 244 (1065)
+..|+||+++|.|+|+++|.+...++++|||++|||+|++. .++|.++.++++|+++||.||+ | ++.
T Consensus 139 ~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~-~--gi~ 207 (368)
T 1w85_A 139 PPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR-F--AIS 207 (368)
T ss_dssp CCCCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECS-E--ETT
T ss_pred CCccccCccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCC-c--cce
Confidence 35699999999999999998777889999999999999986 4679999999999999999984 6 553
No 61
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=98.72 E-value=6.8e-09 Score=120.06 Aligned_cols=121 Identities=14% Similarity=-0.004 Sum_probs=86.3
Q ss_pred ccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcc--
Q psy14416 865 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD-- 942 (1065)
Q Consensus 865 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~-- 942 (1065)
+++|.+++.++ |+++|..... +++.|+ ++.|||++ ++.
T Consensus 181 g~lG~~lp~Av--GaA~A~k~~~----~~~~vv---------------------------------~i~GDGa~-~~G~~ 220 (407)
T 1qs0_A 181 GNLATQFVQAV--GWAMASAIKG----DTKIAS---------------------------------AWIGDGAT-AESDF 220 (407)
T ss_dssp SSSSHHHHHHH--HHHHHHHHTT----CCCCEE---------------------------------EEEETGGG-GSHHH
T ss_pred cccccchhHHH--HHHHHHHHhC----CCCEEE---------------------------------EEECCchh-hcChH
Confidence 55677777776 8887764333 677888 99999999 654
Q ss_pred hhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeC--C
Q psy14416 943 ETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCT--T 1020 (1065)
Q Consensus 943 ~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~ 1020 (1065)
..++.++ .++++|+++|| |||+ |+..... . .......||.+.|++||+.+++|+ +
T Consensus 221 ~Eal~~A-----~~~~lpvi~Vv-~NN~-~gi~~~~-----------~-----~~~~~~~d~a~~a~a~G~~~~~VdG~D 277 (407)
T 1qs0_A 221 HTALTFA-----HVYRAPVILNV-VNNQ-WAISTFQ-----------A-----IAGGESTTFAGRGVGCGIASLRVDGND 277 (407)
T ss_dssp HHHHHHH-----HHHTCCEEEEE-EECS-EETTEEG-----------G-----GGTTTTCCSTHHHHHTTCEEEEEETTC
T ss_pred HHHHHHH-----HHHCcCEEEEE-ECCC-cceeecc-----------c-----cccCCCCCHHHHHHHcCCeEEEEcCCC
Confidence 3467777 78999955555 5556 3321100 0 111135689999999999999998 5
Q ss_pred HHHHHHHHHHHHh---cCCCCEEEEEEeCCC
Q psy14416 1021 VPQIKQAMKKCLQ---TTTRPSLINILINPS 1048 (1065)
Q Consensus 1021 ~~~l~~~~~~~~~---~~~~~~li~~~~~~~ 1048 (1065)
++++.++++++++ ..++|+|||+.+.+.
T Consensus 278 ~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 308 (407)
T 1qs0_A 278 FVAVYAASRWAAERARRGLGPSLIEWVTYRA 308 (407)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEEEEEECCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEEeecc
Confidence 7799999988875 248999999999764
No 62
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=98.71 E-value=2.7e-08 Score=115.07 Aligned_cols=84 Identities=23% Similarity=0.150 Sum_probs=65.6
Q ss_pred CCCcccccccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEE
Q psy14416 156 GKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVI 233 (1065)
Q Consensus 156 ~rpGP~~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV 233 (1065)
|+.+|.|+.. ....++. ..|+||+++|.|+|+++|.+...++++|||++|||++++. .++|.++++|++|+++||
T Consensus 162 G~g~~~h~~~-~~~~~~~--~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv 238 (407)
T 1qs0_A 162 GRQLPIMYSV-REAGFFT--ISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNV 238 (407)
T ss_dssp TCSCTTCCCB-GGGTBCC--CCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCceeecch-hccCccc--cccccccchhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHHHHHHHCcCEEEEE
Confidence 5667777644 1222322 3689999999999999998877899999999999999986 588999999999976666
Q ss_pred EcCCeeeecccc
Q psy14416 234 VNNNGIYGGFDE 245 (1065)
Q Consensus 234 ~NN~gy~~g~~~ 245 (1065)
.|| +| ++..
T Consensus 239 ~NN-~~--gi~~ 247 (407)
T 1qs0_A 239 VNN-QW--AIST 247 (407)
T ss_dssp EEC-SE--ETTE
T ss_pred ECC-Cc--ceee
Confidence 666 56 5543
No 63
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=98.69 E-value=5.7e-09 Score=127.08 Aligned_cols=135 Identities=11% Similarity=0.028 Sum_probs=97.6
Q ss_pred ecceEEEEeccccccccccchhhhhheeccccc---cccccEEEEEccCcccCCccccccceeccccceeeeccceEEEE
Q psy14416 856 VLPVILVIVNNNGIYGGFDETTYASIVESGEVT---TVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 932 (1065)
Q Consensus 856 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1065)
..|-+....|++|.+++.++ |++++...... ....++.|+ ++
T Consensus 105 ~~~g~~~~tG~lG~gl~~Av--G~AlA~~~~~~~~n~~~~d~~v~---------------------------------~v 149 (632)
T 3l84_A 105 STLGVEIATGPLGQGVANAV--GFAMAAKKAQNLLGSDLIDHKIY---------------------------------CL 149 (632)
T ss_dssp TSTTCCSCCCSTTHHHHHHH--HHHHHHHHHHHHHCTTTCCCCEE---------------------------------EE
T ss_pred CCCCcccCCcchhhHHHHHH--HHHHHHHhhccccccCCCCCeEE---------------------------------EE
Confidence 33444455577788777777 88887732110 001267888 99
Q ss_pred eccccccC--cchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHH
Q psy14416 933 NNNGIYGG--FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAV 1010 (1065)
Q Consensus 933 ~gd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1065)
+|||++ + +...++.++ .++++|.+|+|+|||++ +. ... +.. ....|+.+++++
T Consensus 150 ~GDG~~-~eG~~~Eal~~A-----~~~~L~~livi~nnN~~-~i-~~~----------~~~-------~~~~d~~~~~~a 204 (632)
T 3l84_A 150 CGDGDL-QEGISYEACSLA-----GLHKLDNFILIYDSNNI-SI-EGD----------VGL-------AFNENVKMRFEA 204 (632)
T ss_dssp EEHHHH-HSHHHHHHHHHH-----HHTTCTTEEEEEEECSE-ET-TEE----------GGG-------TCCCCHHHHHHH
T ss_pred ECCcch-hhccHHHHHHHH-----HHcCCCcEEEEEECCCc-cc-ccc----------hhh-------hcChhHHHHHHH
Confidence 999999 5 556688888 89999988888888884 11 110 000 124689999999
Q ss_pred cCCCeEeeC--CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 1011 FGHDGYLCT--TVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 1011 ~g~~~~~~~--~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
||.+++.|+ +.++|.+||+++.+. ++|+||++.|.+....
T Consensus 205 ~G~~~~~vdGhd~~~l~~al~~A~~~-~~P~lI~v~T~kG~G~ 246 (632)
T 3l84_A 205 QGFEVLSINGHDYEEINKALEQAKKS-TKPCLIIAKTTIAKGA 246 (632)
T ss_dssp TTCEEEEEETTCHHHHHHHHHHHHTC-SSCEEEEEECCTTTTC
T ss_pred cCCeEEEEeeCCHHHHHHHHHHHHhC-CCCEEEEEeeEeeecC
Confidence 999999996 899999999999885 9999999999765443
No 64
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=98.68 E-value=9.8e-09 Score=126.07 Aligned_cols=134 Identities=13% Similarity=0.078 Sum_probs=96.8
Q ss_pred ceEEEEeccccccccccchhhhhheecccc------ccccccEEEEEccCcccCCccccccceeccccceeeeccceEEE
Q psy14416 858 PVILVIVNNNGIYGGFDETTYASIVESGEV------TTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVI 931 (1065)
Q Consensus 858 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1065)
|-+-...|++|.+++.++ |+++|..... .-.+.++.|+ +
T Consensus 133 pgv~~~tG~lG~gl~~Av--G~AlA~~~~~~~~n~~~~~~~d~~v~---------------------------------~ 177 (690)
T 3m49_A 133 AGVDATTGPLGQGIATAV--GMAMAERHLAAKYNRDAYNIVDHYTY---------------------------------A 177 (690)
T ss_dssp TTCCSCCCSTTHHHHHHH--HHHHHHHHHHHHHCBTTBCCSCCCEE---------------------------------E
T ss_pred CccccCCccccccHHHHH--HHHHHHHHhhccccccccccCCCeEE---------------------------------E
Confidence 333444567787777776 8888763211 0011267788 9
Q ss_pred EeccccccC--cchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHH
Q psy14416 932 VNNNGIYGG--FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMA 1009 (1065)
Q Consensus 932 ~~gd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1065)
++|||++ + +...++.++ .++++|..|+|+|||++ + +.... ......|+.++++
T Consensus 178 i~GDG~l-~eG~~~Eal~~A-----~~~~L~~livI~dnN~~-~-i~~~~-----------------~~~~~~d~~~~~~ 232 (690)
T 3m49_A 178 ICGDGDL-MEGVSAEASSLA-----AHLQLGRLVVLYDSNDI-S-LDGDL-----------------NRSFSESVEDRYK 232 (690)
T ss_dssp EECHHHH-HSHHHHHHHHHH-----HHTTCTTEEEEEEECSB-C-SSSBG-----------------GGTCCCCHHHHHH
T ss_pred EECchhh-hhccHHHHHHHH-----HHhCCCeEEEEEECCCe-e-cccch-----------------hhccchhHHHHHH
Confidence 9999999 5 455678888 88999988888888884 2 11110 0112468999999
Q ss_pred HcCCCeEee---CCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 1010 VFGHDGYLC---TTVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 1010 ~~g~~~~~~---~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
+||.++++| ++.++|.+||+++.+..++|+||++.|.+....
T Consensus 233 a~G~~~~~v~DG~d~~~l~~Al~~a~~~~~~P~lI~v~T~kG~G~ 277 (690)
T 3m49_A 233 AYGWQVIRVEDGNDIEAIAKAIEEAKADEKRPTLIEVRTTIGFGS 277 (690)
T ss_dssp HHTCEEEEESCTTCHHHHHHHHHHHHHCCSSCEEEEEECCTTTTC
T ss_pred HcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCEEEEEEeeccccc
Confidence 999999999 799999999999987348999999999766543
No 65
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=98.68 E-value=8.6e-09 Score=119.18 Aligned_cols=119 Identities=14% Similarity=0.032 Sum_probs=89.1
Q ss_pred ccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcch-
Q psy14416 865 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE- 943 (1065)
Q Consensus 865 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~- 943 (1065)
+.+|.+++.++ |+++|..... +++.|+ +++|||+| ++..
T Consensus 162 g~lG~~lp~Av--G~AlA~~~~~----~~~~vv---------------------------------~~~GDGa~-~~G~~ 201 (400)
T 2bfd_A 162 SPLATQIPQAV--GAAYAAKRAN----ANRVVI---------------------------------CYFGEGAA-SEGDA 201 (400)
T ss_dssp SSTTTHHHHHH--HHHHHHHHHT----CCCCEE---------------------------------EEEETTGG-GSHHH
T ss_pred ccccccccHHH--HHHHhhhhhC----CCCeEE---------------------------------EEECchhh-hcChH
Confidence 55577777766 8888773222 367788 99999999 7776
Q ss_pred -hhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeC--C
Q psy14416 944 -TTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCT--T 1020 (1065)
Q Consensus 944 -~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~ 1020 (1065)
.++.++ .++++|+++||.|| ++ +..... .......|+.+.+++||+.+++|+ +
T Consensus 202 ~Eal~~A-----~~~~lpvi~vv~NN-~~-~i~~~~-----------------~~~~~~~d~~~~a~a~G~~~~~VdG~D 257 (400)
T 2bfd_A 202 HAGFNFA-----ATLECPIIFFCRNN-GY-AISTPT-----------------SEQYRGDGIAARGPGYGIMSIRVDGND 257 (400)
T ss_dssp HHHHHHH-----HHTTCCEEEEEEEC-SE-ETTEEG-----------------GGTCSSSTTGGGTGGGTCEEEEEETTC
T ss_pred HHHHHHH-----HHHCcCEEEEEECC-ce-eeeecc-----------------cccCCCCCHHHHHHHcCCcEEEEeCCC
Confidence 788888 88999999888888 63 211100 001134789999999999999998 6
Q ss_pred HHHHHHHHHHHHh---cCCCCEEEEEEeCC
Q psy14416 1021 VPQIKQAMKKCLQ---TTTRPSLINILINP 1047 (1065)
Q Consensus 1021 ~~~l~~~~~~~~~---~~~~~~li~~~~~~ 1047 (1065)
++++.++++++++ ..++|+|||+.+.+
T Consensus 258 ~~av~~a~~~A~~~ar~~~~P~lIe~~tyR 287 (400)
T 2bfd_A 258 VFAVYNATKEARRRAVAENQPFLIEAMTYR 287 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEEeee
Confidence 8899999998886 23899999999944
No 66
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=98.66 E-value=8.6e-09 Score=125.67 Aligned_cols=123 Identities=14% Similarity=0.044 Sum_probs=90.6
Q ss_pred EeccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccC--
Q psy14416 863 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG-- 940 (1065)
Q Consensus 863 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~-- 940 (1065)
..|++|.+++.++ |++++..... .+++.|+ +++|||+| +
T Consensus 119 ~~G~lG~gl~~A~--G~AlA~~~~~---~~~~~vv---------------------------------~v~GDG~~-~eG 159 (616)
T 3mos_A 119 ATGSLGQGLGAAC--GMAYTGKYFD---KASYRVY---------------------------------CLLGDGEL-SEG 159 (616)
T ss_dssp CCCSTTCHHHHHH--HHHHHHHHTS---CCSCCEE---------------------------------EEEETGGG-GSH
T ss_pred cccccCCccHHHH--HHHHHHHHhC---CCCCEEE---------------------------------EEECcccc-ccC
Confidence 4567788777777 8888763111 1257788 99999999 5
Q ss_pred cchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeC-
Q psy14416 941 FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCT- 1019 (1065)
Q Consensus 941 ~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~- 1019 (1065)
+...++.++ .++++|.+|+|+|||++ +. . +.. .......||.+++++||+++++|+
T Consensus 160 ~~~Eal~~A-----~~~~l~~livi~nnN~~-~i-~----------~~~------~~~~~~~~~~~~~~a~G~~~~~VdG 216 (616)
T 3mos_A 160 SVWEAMAFA-----SIYKLDNLVAILDINRL-GQ-S----------DPA------PLQHQMDIYQKRCEAFGWHAIIVDG 216 (616)
T ss_dssp HHHHHHHHH-----HHTTCTTEEEEEEECSB-CS-S----------SBC------TTTTCHHHHHHHHHHTTCEEEEEET
T ss_pred cHHHHHHHH-----HHcCCCcEEEEEECCCC-CC-c----------CCc------ccccChHHHHHHHHHcCCeEEEEcC
Confidence 556688888 88999988888898883 21 1 100 011134689999999999999994
Q ss_pred -CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q psy14416 1020 -TVPQIKQAMKKCLQTTTRPSLINILINPSAD 1050 (1065)
Q Consensus 1020 -~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 1050 (1065)
+.++|.++++++ .++|+||++.|.+...
T Consensus 217 ~d~~~l~~al~~~---~~~P~lI~v~T~kg~G 245 (616)
T 3mos_A 217 HSVEELCKAFGQA---KHQPTAIIAKTFKGRG 245 (616)
T ss_dssp TCHHHHHHHHHSC---CSSCEEEEEECCTTTT
T ss_pred CCHHHHHHHHHhc---CCCCEEEEEEEecccc
Confidence 899999999765 3899999999976543
No 67
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=98.65 E-value=9.8e-09 Score=126.48 Aligned_cols=136 Identities=14% Similarity=0.014 Sum_probs=99.0
Q ss_pred cceEEEEeccccccccccchhhhhheecccc------ccccccEEEEEccCcccCCccccccceeccccceeeeccceEE
Q psy14416 857 LPVILVIVNNNGIYGGFDETTYASIVESGEV------TTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 930 (1065)
Q Consensus 857 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1065)
.|-+....+++|.+++.++ |++++..... ...+.++.|+
T Consensus 106 ~~g~~~~~G~lG~gl~~Av--G~AlA~~~~~~~~n~~~~~~~~~~v~--------------------------------- 150 (669)
T 2r8o_A 106 TAGVETTTGPLGQGIANAV--GMAIAEKTLAAQFNRPGHDIVDHYTY--------------------------------- 150 (669)
T ss_dssp STTCCSCCCSTTHHHHHHH--HHHHHHHHHHHHHCBTTBCCCCCCEE---------------------------------
T ss_pred CCCcccccccccchHHHHH--HHHHHHHHhccccccCccCCcCCeEE---------------------------------
Confidence 3445566678888888877 8888763110 0011266788
Q ss_pred EEeccccccC--cchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHH
Q psy14416 931 IVNNNGIYGG--FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMM 1008 (1065)
Q Consensus 931 ~~~gd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1065)
+++|||++ + +...++.++ .++++|.+|+|+|||++ +. ... .. .....|+.+++
T Consensus 151 ~~~GDG~~-~eG~~~Eal~~A-----~~~~L~~li~i~~nN~~-~i-~~~----------~~-------~~~~~d~~~~~ 205 (669)
T 2r8o_A 151 AFMGDGCM-MEGISHEVCSLA-----GTLKLGKLIAFYDDNGI-SI-DGH----------VE-------GWFTDDTAMRF 205 (669)
T ss_dssp EEECHHHH-HSHHHHHHHHHH-----HHTTCTTEEEEEEECSE-ET-TEE----------GG-------GTCCCCHHHHH
T ss_pred EEECHhHh-cchHHHHHHHHH-----HHcCCCcEEEEEECCCc-Ee-ccc----------cc-------cccCccHHHHH
Confidence 99999999 5 455678888 88999988888888883 21 110 00 01135899999
Q ss_pred HHcCCCeE-eeC--CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 1009 AVFGHDGY-LCT--TVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 1009 ~~~g~~~~-~~~--~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
++||++++ .|+ +.++|.++++++.+..++|+||++.|.+.....
T Consensus 206 ~a~G~~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~G~~ 252 (669)
T 2r8o_A 206 EAYGWHVIRDIDGHDAASIKRAVEEARAVTDKPSLLMCKTIIGFGSP 252 (669)
T ss_dssp HHTTCEEEEEEETTCHHHHHHHHHHHHHCCSSCEEEEEECCTTTTCT
T ss_pred HHCCCeEEeEECCCCHHHHHHHHHHHHhcCCCCEEEEEEeEeccCcC
Confidence 99999998 887 999999999999874489999999998766554
No 68
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=98.63 E-value=1e-08 Score=126.47 Aligned_cols=133 Identities=14% Similarity=0.116 Sum_probs=96.2
Q ss_pred ceEEEEeccccccccccchhhhhheecccc------ccccccEEEEEccCcccCCccccccceeccccceeeeccceEEE
Q psy14416 858 PVILVIVNNNGIYGGFDETTYASIVESGEV------TTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVI 931 (1065)
Q Consensus 858 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1065)
|-+....+.+|.+++.++ |++++..... ...+.++.|+ +
T Consensus 109 ~g~~~~~G~lG~gl~~Av--G~AlA~~~~~~~~n~~~~~~~~~~vv---------------------------------~ 153 (680)
T 1gpu_A 109 PGVEVTTGPLGQGISNAV--GMAMAQANLAATYNKPGFTLSDNYTY---------------------------------V 153 (680)
T ss_dssp TTCCSCCCSTTHHHHHHH--HHHHHHHHHHHHHCBTTBCCCCCCEE---------------------------------E
T ss_pred CCeeeccccccchHHHHH--HHHHHHHHhccccccCccCCCCCeEE---------------------------------E
Confidence 444455677788877777 8888763110 0011256788 9
Q ss_pred EeccccccC--cchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHH
Q psy14416 932 VNNNGIYGG--FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMA 1009 (1065)
Q Consensus 932 ~~gd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1065)
++|||++ + +...++.++ .+++||.+|+|+|||++ +. ... .. .....|+.++++
T Consensus 154 i~GDG~~-~eG~~~Eal~~A-----~~~~L~~li~i~~nN~~-~i-~~~----------~~-------~~~~~d~~~~~~ 208 (680)
T 1gpu_A 154 FLGDGCL-QEGISSEASSLA-----GHLKLGNLIAIYDDNKI-TI-DGA----------TS-------ISFDEDVAKRYE 208 (680)
T ss_dssp EECHHHH-HSHHHHHHHHHH-----HHTTCTTEEEEEEECSE-ET-TEE----------GG-------GTCCCCHHHHHH
T ss_pred EECCCcc-chhhHHHHHHHH-----HHhCCCcEEEEEECCCc-eE-ecc----------cc-------cccCccHHHHHH
Confidence 9999999 5 555678888 88999988888888884 21 110 00 012468999999
Q ss_pred HcCCCeE-eeC---CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q psy14416 1010 VFGHDGY-LCT---TVPQIKQAMKKCLQTTTRPSLINILINPSAD 1050 (1065)
Q Consensus 1010 ~~g~~~~-~~~---~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 1050 (1065)
+||++++ .|+ +.++|.++++++.+..++|+||++.|.+...
T Consensus 209 a~G~~~~~~vdG~~d~~~l~~al~~A~~~~~~P~lI~~~T~kg~G 253 (680)
T 1gpu_A 209 AYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKMTTTIGYG 253 (680)
T ss_dssp HHTCEEEEESCTTTCHHHHHHHHHHHHHCTTSCEEEEEECCTTTT
T ss_pred hcCCeEEEEecCCCCHHHHHHHHHHHHHCCCCCEEEEEEeecccc
Confidence 9999999 888 9999999999998744899999999987433
No 69
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=98.61 E-value=1.7e-08 Score=123.62 Aligned_cols=133 Identities=12% Similarity=0.020 Sum_probs=94.4
Q ss_pred ceEEEEeccccccccccchhhhhheecccc------ccccccEEEEEccCcccCCccccccceeccccceeeeccceEEE
Q psy14416 858 PVILVIVNNNGIYGGFDETTYASIVESGEV------TTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVI 931 (1065)
Q Consensus 858 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1065)
|-+-...|++|.+++.++ |+++|..... ...+.++.|+ +
T Consensus 109 ~gve~~tG~lG~gl~~Av--G~AlA~~~~~~~~~~~~~~~~d~~v~---------------------------------~ 153 (663)
T 3kom_A 109 PGVETTTGPLGQGVANAV--GMALGEKLLSDRYNTPDLKVIDHHTY---------------------------------V 153 (663)
T ss_dssp TTCCSCCCSTTHHHHHHH--HHHHHHHHHHHHHCBTTBCSCCCCEE---------------------------------E
T ss_pred CCcccCCcchhhHHHHHH--HHHHhHHhhcccccccccccCCCeEE---------------------------------E
Confidence 333345567787777776 8888763211 0011167888 9
Q ss_pred EeccccccC--cchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHH
Q psy14416 932 VNNNGIYGG--FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMA 1009 (1065)
Q Consensus 932 ~~gd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1065)
++|||++ + +...++.++ .+++||..|+|+|||++ + +.. .+.. ....|+.+.++
T Consensus 154 i~GDG~l-~eG~~~Eal~~A-----~~~~L~~livi~dnN~~-~-i~~----------~~~~-------~~~~d~~~~~~ 208 (663)
T 3kom_A 154 FLGDGCL-MEGVSHEACSLA-----GTLGLNKLVAFWDDNNI-S-IDG----------DTKG-------WFSDNTPERFR 208 (663)
T ss_dssp EECHHHH-HSHHHHHHHHHH-----HHHTCTTEEEEEEECC-----------------CGGG-------TCCCCHHHHHH
T ss_pred EECchhh-hhchHHHHHHHH-----HHhCCCeEEEEEECCCc-c-ccc----------chhh-------hcchhHHHHHH
Confidence 9999999 5 455688888 89999988888888884 1 111 1110 12478999999
Q ss_pred HcCCCeE-eeC--CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q psy14416 1010 VFGHDGY-LCT--TVPQIKQAMKKCLQTTTRPSLINILINPSAD 1050 (1065)
Q Consensus 1010 ~~g~~~~-~~~--~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 1050 (1065)
+||.+++ .|+ +.++|.+|++++.+..++|+||++.|.+...
T Consensus 209 a~G~~~~~~vdG~d~~~l~~al~~A~~~~~~P~lI~~~T~kg~G 252 (663)
T 3kom_A 209 AYGWHVIENVDGHDFVAIEKAINEAHSQQQKPTLICCKTVIGFG 252 (663)
T ss_dssp HTTCEEEEEEETTCHHHHHHHHHHHHHCSSSCEEEEEECCTTTT
T ss_pred HCCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEEecccccc
Confidence 9999999 785 8999999999998734899999999976543
No 70
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=98.60 E-value=1.2e-08 Score=125.42 Aligned_cols=94 Identities=19% Similarity=0.219 Sum_probs=71.2
Q ss_pred EEeccccccC--cchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHH
Q psy14416 931 IVNNNGIYGG--FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMM 1008 (1065)
Q Consensus 931 ~~~gd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1065)
+++|||+| + +...++.++ .++++|.+|+|+|||++ + +... +.. ....|+.+.+
T Consensus 192 ~i~GDG~l-~eG~~~Eal~~A-----~~~~L~~livI~dnN~~-~-i~~~----------~~~-------~~~~d~~~~~ 246 (711)
T 3uk1_A 192 VFLGDGCL-MEGISHEACSLA-----GTLKLNKLIALYDDNGI-S-IDGD----------VVN-------WFHDDTPKRF 246 (711)
T ss_dssp EEECHHHH-HSHHHHHHHHHH-----HHTTCTTEEEEEEECSE-E-TTEE----------GGG-------TCCCCHHHHH
T ss_pred EEECCcch-hhccHHHHHHHH-----HHhCCCcEEEEEECCCc-c-cccc----------hhh-------hcCCCHHHHH
Confidence 99999999 5 455688888 99999988888888884 1 1110 000 0247899999
Q ss_pred HHcCCCeEe-e--CCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q psy14416 1009 AVFGHDGYL-C--TTVPQIKQAMKKCLQTTTRPSLINILINPSAD 1050 (1065)
Q Consensus 1009 ~~~g~~~~~-~--~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 1050 (1065)
++||.++++ | ++.++|.++++++.+. ++|+||++.|.+...
T Consensus 247 ~a~G~~~~~~vdG~d~~~l~~Al~~A~~~-~~P~lI~v~T~kG~G 290 (711)
T 3uk1_A 247 EAYGWNVIPNVNGHDVDAIDAAIAKAKRS-DKPSLICCKTRIGNG 290 (711)
T ss_dssp HHTTCEEEEEEETTCHHHHHHHHHHHTTC-SSCEEEEEEC-----
T ss_pred HHcCCcEEEEeCCCCHHHHHHHHHHHHhC-CCCEEEEEccccccC
Confidence 999999998 6 5899999999999875 999999999975443
No 71
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=98.58 E-value=2.1e-08 Score=123.59 Aligned_cols=136 Identities=13% Similarity=0.078 Sum_probs=100.0
Q ss_pred cceEEEEeccccccccccchhhhhheecccc------ccccccEEEEEccCcccCCccccccceeccccceeeeccceEE
Q psy14416 857 LPVILVIVNNNGIYGGFDETTYASIVESGEV------TTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 930 (1065)
Q Consensus 857 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1065)
.|-+....+++|.+++.++ |++++..... ....+++.|+
T Consensus 119 ~~~~~~~~G~lG~gl~~Av--G~AlA~~~~~~~~n~~~~~~~~~~v~--------------------------------- 163 (675)
T 1itz_A 119 TPGVEVTTGPLGQGIANAV--GLALAEKHLAARFNKPDSEIVDHYTY--------------------------------- 163 (675)
T ss_dssp CTTCCSCCCSTTHHHHHHH--HHHHHHHHHHHHHCBTTBCCCCCCEE---------------------------------
T ss_pred CCCeeECCccHHhHHHHHH--HHHHHhhhhcccccccccCCCCCEEE---------------------------------
Confidence 4455566678888888877 8888763111 1112567788
Q ss_pred EEeccccccC--cchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHH
Q psy14416 931 IVNNNGIYGG--FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMM 1008 (1065)
Q Consensus 931 ~~~gd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1065)
+++|||++ + +...++.++ .+++|+.+|+|+|||++ +. ... ... . ...|+.+++
T Consensus 164 ~i~GDG~~-~eG~~~Eal~~A-----~~~~L~~li~i~~nN~~-~i-~~~----------~~~-----~--~~~d~~~~~ 218 (675)
T 1itz_A 164 VILGDGCQ-MEGIANEACSLA-----GHWGLGKLIAFYDDNHI-SI-DGD----------TEI-----A--FTEDVSTRF 218 (675)
T ss_dssp EEECHHHH-HSHHHHHHHHHH-----HHTTCTTEEEEEEECSE-ET-TEE----------GGG-----T--CCSCHHHHH
T ss_pred EEECHhHh-chhHHHHHHHHH-----HHhCCCcEEEEEECCCc-cC-CCC----------hhh-----h--cChhHHHHH
Confidence 99999999 5 566788888 88999877788888884 11 110 000 1 157899999
Q ss_pred HHcCCCeE-eeC---CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 1009 AVFGHDGY-LCT---TVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 1009 ~~~g~~~~-~~~---~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
++||.+++ .|+ +.++|.++++++.+..++|+||++.|.+.....
T Consensus 219 ~a~G~~~~~~vdG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~G~~ 266 (675)
T 1itz_A 219 EALGWHTIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIKVTTTIGFGSP 266 (675)
T ss_dssp HHTTCEEEEESCTTTCHHHHHHHHHHHHHCCSSCEEEEEECCTTTTCT
T ss_pred HhCCCEEEEEecCCCCHHHHHHHHHHHHHCCCCeEEEEEeeecccCcc
Confidence 99999998 887 999999999999874489999999998865543
No 72
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=98.58 E-value=1.8e-08 Score=123.72 Aligned_cols=132 Identities=14% Similarity=0.079 Sum_probs=97.0
Q ss_pred ceEEEEeccccccccccchhhhhheecccc------ccccccEEEEEccCcccCCccccccceeccccceeeeccceEEE
Q psy14416 858 PVILVIVNNNGIYGGFDETTYASIVESGEV------TTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVI 931 (1065)
Q Consensus 858 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1065)
|-+....+++|.+++.++ |++++..... ....+++.|+ +
T Consensus 111 ~g~~~~~G~lG~gl~~Av--G~A~A~~~~~~~~~~~~~~~~~~~v~---------------------------------~ 155 (651)
T 2e6k_A 111 PGVEVTTGPLGQGISTAV--GLALAERKLAAEFNRPGHVVVDHYTY---------------------------------V 155 (651)
T ss_dssp TTCCSCCCSTTHHHHHHH--HHHHHHHHHHHHHCBTTBCCCCCCEE---------------------------------E
T ss_pred CCeeeccccccchHHHHH--HHHHHHHhhcccccccccCCCCCEEE---------------------------------E
Confidence 445556677888888877 8888763111 1112467788 9
Q ss_pred EeccccccC--cchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHH
Q psy14416 932 VNNNGIYGG--FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMA 1009 (1065)
Q Consensus 932 ~~gd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1065)
++|||++ + +...++.++ .+++||.+|+|+|||++ +. ... ... . ...|+.++++
T Consensus 156 ~~GDG~~-~eG~~~Eal~~A-----~~~~L~~li~i~~nN~~-~i-~~~----------~~~-----~--~~~d~~~~~~ 210 (651)
T 2e6k_A 156 LASDGDL-MEGVSGEAASLA-----GHWGLSKLIVFWDDNRI-SI-DGP----------TDL-----A--FTEDVLARYR 210 (651)
T ss_dssp EECHHHH-HSHHHHHHHHHH-----HHTTCTTEEEEEEECCE-ET-TEE----------GGG-----T--CCSCHHHHHH
T ss_pred EEChhhh-chhHHHHHHHHH-----HHcCCCeEEEEEECCCc-cc-ccc----------ccc-----c--cCccHHHHHH
Confidence 9999999 5 455678888 88999988888888883 21 110 000 0 1468999999
Q ss_pred HcCCCeE-eeC--CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q psy14416 1010 VFGHDGY-LCT--TVPQIKQAMKKCLQTTTRPSLINILINPSAD 1050 (1065)
Q Consensus 1010 ~~g~~~~-~~~--~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 1050 (1065)
+||++++ +|+ +.++|.++++++.+. ++|+||++.|.+...
T Consensus 211 a~G~~~~~~vdG~d~~~l~~al~~a~~~-~~P~lI~~~t~kg~G 253 (651)
T 2e6k_A 211 AYGWQTLRVEDVNDLEALRKAIKLAKLD-ERPTLIAVRSHIGFG 253 (651)
T ss_dssp HTTCEEEEESCTTCHHHHHHHHHHHHHS-SSCEEEEEECCTTTT
T ss_pred hCCCeEEEEeCCCCHHHHHHHHHHHHHC-CCCEEEEEEeEeccc
Confidence 9999999 887 999999999999884 899999999986544
No 73
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=98.51 E-value=9.2e-08 Score=117.76 Aligned_cols=120 Identities=20% Similarity=0.205 Sum_probs=83.9
Q ss_pred cccCCCcchhHHHHHHhhhcccC-----C-----CCeEEEEeCCCCcc--ccHHHHHHhhhcCCCEEEEEEcCCeeeecc
Q psy14416 176 TFGTMGVGLGFALAAALYCNHYA-----P-----GKRVVCVQGDSAFG--FSGMELETLVRYRLPVILVIVNNNGIYGGF 243 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~~-----p-----~rrvV~l~GDGsf~--m~~~eL~t~vr~~lpivivV~NN~gy~~g~ 243 (1065)
..|+||++++.|+|+++|..... | +++|+|++|||+++ |+.++|.++.++++|.+++|+||++| ++
T Consensus 153 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~--~i 230 (711)
T 3uk1_A 153 TTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGI--SI 230 (711)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSE--ET
T ss_pred CccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccHHHHHHHHHHhCCCcEEEEEECCCc--cc
Confidence 46899999999999999965322 1 79999999999999 67899999999999988888888877 44
Q ss_pred ccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHH
Q psy14416 244 DEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAI 323 (1065)
Q Consensus 244 ~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ 323 (1065)
+.+.-. . + . .-+.+..+..|++.+--+-|.....+..+ .--
T Consensus 231 ~~~~~~---~---~--------~----~d~~~~~~a~G~~~~~~vdG~d~~~l~~A---------------------l~~ 271 (711)
T 3uk1_A 231 DGDVVN---W---F--------H----DDTPKRFEAYGWNVIPNVNGHDVDAIDAA---------------------IAK 271 (711)
T ss_dssp TEEGGG---T---C--------C----CCHHHHHHHTTCEEEEEEETTCHHHHHHH---------------------HHH
T ss_pred ccchhh---h---c--------C----CCHHHHHHHcCCcEEEEeCCCCHHHHHHH---------------------HHH
Confidence 431111 1 0 0 11344556667765544556555444433 333
Q ss_pred HHHhCCCeEEEEe
Q psy14416 324 GYLTKKPGVCLVV 336 (1065)
Q Consensus 324 ar~tgkpgv~~~t 336 (1065)
++..++|.++.|.
T Consensus 272 A~~~~~P~lI~v~ 284 (711)
T 3uk1_A 272 AKRSDKPSLICCK 284 (711)
T ss_dssp HTTCSSCEEEEEE
T ss_pred HHhCCCCEEEEEc
Confidence 4557888888774
No 74
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=98.49 E-value=1.1e-07 Score=116.57 Aligned_cols=120 Identities=17% Similarity=0.168 Sum_probs=81.6
Q ss_pred cccCCCcchhHHHHHHhhhcccC-----C-----CCeEEEEeCCCCcc--ccHHHHHHhhhcCCCEEEEEEcCCeeeecc
Q psy14416 176 TFGTMGVGLGFALAAALYCNHYA-----P-----GKRVVCVQGDSAFG--FSGMELETLVRYRLPVILVIVNNNGIYGGF 243 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~~-----p-----~rrvV~l~GDGsf~--m~~~eL~t~vr~~lpivivV~NN~gy~~g~ 243 (1065)
..|+||++++.|+|+++|..... | +++|+|++|||+++ |+.++|.++.+++||.+++|+||++| ++
T Consensus 114 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livi~dnN~~--~i 191 (663)
T 3kom_A 114 TTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAFWDDNNI--SI 191 (663)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECC-----
T ss_pred CCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhhchHHHHHHHHHHhCCCeEEEEEECCCc--cc
Confidence 46999999999999999965332 2 79999999999999 67899999999999998999999877 44
Q ss_pred ccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHH
Q psy14416 244 DEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAI 323 (1065)
Q Consensus 244 ~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ 323 (1065)
+.+ .+.. + . .-+.+..+..|.+.+.-+-|.....+. .|.-.
T Consensus 192 ~~~---~~~~---~--------~----~d~~~~~~a~G~~~~~~vdG~d~~~l~---------------------~al~~ 232 (663)
T 3kom_A 192 DGD---TKGW---F--------S----DNTPERFRAYGWHVIENVDGHDFVAIE---------------------KAINE 232 (663)
T ss_dssp --C---GGGT---C--------C----CCHHHHHHHTTCEEEEEEETTCHHHHH---------------------HHHHH
T ss_pred ccc---hhhh---c--------c----hhHHHHHHHCCCeEEEEEcCCCHHHHH---------------------HHHHH
Confidence 431 1111 0 0 113445556666665445555444443 33444
Q ss_pred HHH-hCCCeEEEEe
Q psy14416 324 GYL-TKKPGVCLVV 336 (1065)
Q Consensus 324 ar~-tgkpgv~~~t 336 (1065)
++. +++|.++.|.
T Consensus 233 A~~~~~~P~lI~~~ 246 (663)
T 3kom_A 233 AHSQQQKPTLICCK 246 (663)
T ss_dssp HHHCSSSCEEEEEE
T ss_pred HHhcCCCCEEEEEe
Confidence 565 6889988875
No 75
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=98.49 E-value=7.9e-08 Score=117.70 Aligned_cols=140 Identities=11% Similarity=0.101 Sum_probs=86.7
Q ss_pred eccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccC--c
Q psy14416 864 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG--F 941 (1065)
Q Consensus 864 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~--~ 941 (1065)
.+.+|.+++.|+ |+++|..... +++.|+ +++|||+| + +
T Consensus 120 ~G~~G~gl~~A~--G~AlA~~~~~----~~~~Vv---------------------------------~v~GDG~~-~~G~ 159 (621)
T 2o1s_A 120 VGHSSTSISAGI--GIAVAAEKEG----KNRRTV---------------------------------CVIGDGAI-TAGM 159 (621)
T ss_dssp CSSSSCHHHHHH--HHHHHHHHHT----SCCCEE---------------------------------EEEETTGG-GSHH
T ss_pred CcccchHHHHHH--HHHHHHHHhC----CCCeEE---------------------------------EEEchhhh-hccH
Confidence 466688777777 8888764333 678899 99999999 5 4
Q ss_pred chhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhh----H-hHHhhcCCc-------ccCC---CC-CCC-CCCccH
Q psy14416 942 DETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEAT----Y-ASIVESGEV-------TTVS---PP-TSL-GPSLRY 1004 (1065)
Q Consensus 942 ~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~----~-~~~~~~~~~-------~~~~---~~-~~~-~~~~~~ 1004 (1065)
...++.++ .++++|+++| +|||+ |+...... + .++.....+ .... |. ... ....||
T Consensus 160 ~~EaL~~A-----~~~~~pli~v-vnnN~-~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~~~~~~~r~~~~ 232 (621)
T 2o1s_A 160 AFEAMNHA-----GDIRPDMLVI-LNDNE-MSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPPIKELLKRTEEH 232 (621)
T ss_dssp HHHHHHHH-----HHHCCSEEEE-EEECC---------------------------------------------------
T ss_pred HHHHHHHH-----HhhCCCEEEE-EeCCC-cccCCCcchHHHHHHhhhcchhHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 45678888 8899999755 56666 22111100 0 000000000 0000 00 000 001133
Q ss_pred -------HHHHHHcCCCeE-ee--CCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 1005 -------EKMMAVFGHDGY-LC--TTVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 1005 -------~~~~~~~g~~~~-~~--~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
.+++++||++++ .+ ++.++|.++++++.+. ++|+|||+.|.+....
T Consensus 233 ~~~~~~p~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~~-~gP~lI~v~t~kg~G~ 288 (621)
T 2o1s_A 233 IKGMVVPGTLFEELGFNYIGPVDGHDVLGLITTLKNMRDL-KGPQFLHIMTKKGRGY 288 (621)
T ss_dssp ------CHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHS-CSEEEEEEECCCTTCC
T ss_pred hhhccChhhHHHHCCCeEeeeeCCCCHHHHHHHHHHHHHc-CCCEEEEEEEecccCC
Confidence 689999999998 77 5999999999999886 8999999999875444
No 76
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=98.48 E-value=1.2e-07 Score=116.51 Aligned_cols=120 Identities=20% Similarity=0.204 Sum_probs=85.2
Q ss_pred cccCCCcchhHHHHHHhhhcccC----------CCCeEEEEeCCCCcc--ccHHHHHHhhhcCCCEEEEEEcCCeeeecc
Q psy14416 176 TFGTMGVGLGFALAAALYCNHYA----------PGKRVVCVQGDSAFG--FSGMELETLVRYRLPVILVIVNNNGIYGGF 243 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~~----------p~rrvV~l~GDGsf~--m~~~eL~t~vr~~lpivivV~NN~gy~~g~ 243 (1065)
..|+||++++.|+|+++|..... .+++|+|++|||+++ |+.++|.++.++++|.+++|+||++| ++
T Consensus 138 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~--~i 215 (690)
T 3m49_A 138 TTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDI--SL 215 (690)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSB--CS
T ss_pred CCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhhhccHHHHHHHHHHhCCCeEEEEEECCCe--ec
Confidence 35899999999999999965432 289999999999999 67899999999999999999999877 55
Q ss_pred ccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHH
Q psy14416 244 DEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAI 323 (1065)
Q Consensus 244 ~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ 323 (1065)
+.+. +.. + . .-+.+..+..|.+.+-..-|.....+.. |.-.
T Consensus 216 ~~~~---~~~---~--------~----~d~~~~~~a~G~~~~~v~DG~d~~~l~~---------------------Al~~ 256 (690)
T 3m49_A 216 DGDL---NRS---F--------S----ESVEDRYKAYGWQVIRVEDGNDIEAIAK---------------------AIEE 256 (690)
T ss_dssp SSBG---GGT---C--------C----CCHHHHHHHHTCEEEEESCTTCHHHHHH---------------------HHHH
T ss_pred ccch---hhc---c--------c----hhHHHHHHHcCCcEEEEecCCCHHHHHH---------------------HHHH
Confidence 4411 110 0 0 1134555566776554436665544443 3445
Q ss_pred HHH-hCCCeEEEEe
Q psy14416 324 GYL-TKKPGVCLVV 336 (1065)
Q Consensus 324 ar~-tgkpgv~~~t 336 (1065)
++. +++|.++.|.
T Consensus 257 a~~~~~~P~lI~v~ 270 (690)
T 3m49_A 257 AKADEKRPTLIEVR 270 (690)
T ss_dssp HHHCCSSCEEEEEE
T ss_pred HHhcCCCCEEEEEE
Confidence 566 7889988875
No 77
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=98.48 E-value=3.9e-08 Score=120.57 Aligned_cols=142 Identities=10% Similarity=0.087 Sum_probs=89.3
Q ss_pred EeccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccC--
Q psy14416 863 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG-- 940 (1065)
Q Consensus 863 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~-- 940 (1065)
..+.+|.+++.|+ |+++|..... +++.|+ +++|||+| +
T Consensus 121 ~~G~~G~gl~~Av--G~AlA~k~~~----~~~~Vv---------------------------------~v~GDG~~-~~G 160 (629)
T 2o1x_A 121 TVGHASTSLTNAL--GMALARDAQG----KDFHVA---------------------------------AVIGDGSL-TGG 160 (629)
T ss_dssp CCSSSSCHHHHHH--HHHHHHHHHT----CCCCEE---------------------------------EEEETTGG-GSH
T ss_pred CCCcccccHhHHH--HHHHHHHHhC----CCCeEE---------------------------------EEEchhhh-hcc
Confidence 3466688888777 8888754333 788899 99999999 5
Q ss_pred cchhhHHHhhccCccccCCCEEEEEEcCCcccCCCch-h---hH-hHHhhcCCccc-------C-----CCCCCCC-CCc
Q psy14416 941 FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE-A---TY-ASIVESGEVTT-------V-----SPPTSLG-PSL 1002 (1065)
Q Consensus 941 ~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~-~---~~-~~~~~~~~~~~-------~-----~~~~~~~-~~~ 1002 (1065)
+...++.++ .++++|+++| +|||+ |+.... . .+ ..+.....+.. . .+..... ...
T Consensus 161 ~~~EaL~~A-----~~~~~pli~I-vnnN~-~~i~~~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~ 233 (629)
T 2o1x_A 161 MALAALNTI-----GDMGRKMLIV-LNDNE-MSISENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAK 233 (629)
T ss_dssp HHHHHHHHH-----HHHCCSEEEE-EEECS-BSSSBCCSSHHHHC-----------------------------------
T ss_pred HHHHHHHHH-----HhhCCCEEEE-EECCC-CCCCCChhHHHHHHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 556789998 8899998655 56666 221110 0 11 11000000000 0 0000000 001
Q ss_pred cH-------H--HHHHHcCCCeE-eeC--CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 1003 RY-------E--KMMAVFGHDGY-LCT--TVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 1003 ~~-------~--~~~~~~g~~~~-~~~--~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
|| . +++++||++++ +++ +.++|.++++++.+. ++|+||++.+.+....+
T Consensus 234 d~~~~~~~p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~~-~~P~lI~v~t~kg~G~~ 294 (629)
T 2o1x_A 234 NSTRHFFDPASVNPFAAMGVRYVGPVDGHNVQELVWLLERLVDL-DGPTILHIVTTKGKGLS 294 (629)
T ss_dssp ----------CCCTTGGGTCEEEEEEESSCHHHHHHHHHHHTTS-SSEEEEEEECCTTTTCH
T ss_pred HHHHhhcCcccchHHHhcCCeEEeeECCcCHHHHHHHHHHHHhc-CCCEEEEEEEecCCCCC
Confidence 33 3 78999999998 775 999999999999876 89999999998765543
No 78
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=98.47 E-value=1.3e-07 Score=116.42 Aligned_cols=121 Identities=19% Similarity=0.191 Sum_probs=85.8
Q ss_pred cccCCCcchhHHHHHHhhhcccC----------CCCeEEEEeCCCCcc--ccHHHHHHhhhcCCCEEEEEEcCCeeeecc
Q psy14416 176 TFGTMGVGLGFALAAALYCNHYA----------PGKRVVCVQGDSAFG--FSGMELETLVRYRLPVILVIVNNNGIYGGF 243 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~~----------p~rrvV~l~GDGsf~--m~~~eL~t~vr~~lpivivV~NN~gy~~g~ 243 (1065)
..|+||++++.|+|++++..... ++++|+|++|||+++ |+.++|.++.+++|+.+++|+||++| ++
T Consensus 125 ~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~--~i 202 (675)
T 1itz_A 125 TTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHI--SI 202 (675)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSE--ET
T ss_pred CCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCc--cC
Confidence 46899999999999999965433 789999999999999 88999999999999988888998877 44
Q ss_pred ccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCC-chhhhHHHhhcCCceEEEccCCchHHHHHHH
Q psy14416 244 DEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGI-PVIELAMACQQEGIHYIGMRNEQAACYAAQA 322 (1065)
Q Consensus 244 ~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~-~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g 322 (1065)
+.+.-. . . . .-+.+..+..|.+.+.-+-|. ....+..+ .-
T Consensus 203 ~~~~~~------~-------~-~----~d~~~~~~a~G~~~~~~vdG~~d~~~l~~a---------------------l~ 243 (675)
T 1itz_A 203 DGDTEI------A-------F-T----EDVSTRFEALGWHTIWVKNGNTGYDDIRAA---------------------IK 243 (675)
T ss_dssp TEEGGG------T-------C-C----SCHHHHHHHTTCEEEEESCTTTCHHHHHHH---------------------HH
T ss_pred CCChhh------h-------c-C----hhHHHHHHhCCCEEEEEecCCCCHHHHHHH---------------------HH
Confidence 331111 0 0 0 113455556777766555555 44444433 33
Q ss_pred HHHH-hCCCeEEEEec
Q psy14416 323 IGYL-TKKPGVCLVVS 337 (1065)
Q Consensus 323 ~ar~-tgkpgv~~~ts 337 (1065)
-++. +++|.++.+..
T Consensus 244 ~a~~~~~~P~lI~~~T 259 (675)
T 1itz_A 244 EAKAVTDKPTLIKVTT 259 (675)
T ss_dssp HHHHCCSSCEEEEEEC
T ss_pred HHHHCCCCeEEEEEee
Confidence 3454 68899888754
No 79
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=98.46 E-value=8.6e-08 Score=118.02 Aligned_cols=135 Identities=14% Similarity=0.077 Sum_probs=96.9
Q ss_pred cceEEEEeccccccccccchhhhhheecccc------ccccccEEEEEccCcccCCccccccceeccccceeeeccceEE
Q psy14416 857 LPVILVIVNNNGIYGGFDETTYASIVESGEV------TTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 930 (1065)
Q Consensus 857 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1065)
.|-+....+++|.+++.++ |++++..... ...+.++.|+
T Consensus 108 ~pgv~~~tG~lG~gl~~Av--G~AlA~~~~~~~~n~~g~~~~d~~v~--------------------------------- 152 (673)
T 1r9j_A 108 TPGVEVTTGPLGQGIANAV--GLAIAEAHLAATFNRPGYNIVDHYTY--------------------------------- 152 (673)
T ss_dssp STTCCSCCCSTTHHHHHHH--HHHHHHHHHHHHHCBTTBCCCCCCEE---------------------------------
T ss_pred CCCeeeccCCCCCcHHHHH--HHHHHHHHhhhhccccccCCCCCEEE---------------------------------
Confidence 4555566678888877777 8887763111 1112366788
Q ss_pred EEeccccccCcc--hhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHH
Q psy14416 931 IVNNNGIYGGFD--ETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMM 1008 (1065)
Q Consensus 931 ~~~gd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1065)
+++|||++ +.. ..++.++ .+++||.+|+|+|||++ + +... ... . ...|+.+.+
T Consensus 153 ~~~GDG~~-~eG~~~Eal~~A-----~~~~L~~li~i~d~N~~-~-i~~~----------~~~-----~--~~~d~~~~~ 207 (673)
T 1r9j_A 153 VYCGDGCL-MEGVCQEALSLA-----GHLALEKLIVIYDSNYI-S-IDGS----------TSL-----S--FTEQCHQKY 207 (673)
T ss_dssp EEECHHHH-HSHHHHHHHHHH-----HHHTCTTEEEEEEECSB-C-SSSB----------GGG-----T--CCCCHHHHH
T ss_pred EEECcchh-cccHHHHHHHHH-----HHhCCCcEEEEEECCCC-c-cccc----------hhh-----c--cCHhHHHHH
Confidence 99999999 532 4457777 88999977788888884 2 1111 000 0 146899999
Q ss_pred HHcCCCeE-ee---CCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 1009 AVFGHDGY-LC---TTVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 1009 ~~~g~~~~-~~---~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
++||.+++ .| ++.++|.+|++++.+..++|+||++.|.+....
T Consensus 208 ~a~G~~~~~~vdG~~d~~~l~~Al~~A~~~~~~P~lI~~~T~kg~G~ 254 (673)
T 1r9j_A 208 VAMGFHVIEVKNGDTDYEGLRKALAEAKATKGKPKMIVQTTTIGFGS 254 (673)
T ss_dssp HHTTCEEEEESCTTTCHHHHHHHHHHHHHCCSSCEEEEEECCTTTTS
T ss_pred HHCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCCEEEEEeccccccc
Confidence 99999999 88 899999999999987458999999999775443
No 80
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=98.42 E-value=8.6e-08 Score=124.62 Aligned_cols=44 Identities=16% Similarity=0.149 Sum_probs=41.6
Q ss_pred CCeEEEEeCCC-CccccHHHHHHhhhcCCCEEEEEEcCCeeeecccc
Q psy14416 200 GKRVVCVQGDS-AFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDE 245 (1065)
Q Consensus 200 ~rrvV~l~GDG-sf~m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~ 245 (1065)
+|+||+++||| +|+|++|||.|++++++|+++||+||+.| ||++
T Consensus 953 ~~~Vv~i~GDG~~~~mg~~eL~ta~~~~~~v~iiVlnN~~y--g~tg 997 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYDIGYGGLDHVLASGEDVNVFVMDTEVY--SNTG 997 (1231)
T ss_dssp CCEEEEEEEHHHHHTTTHHHHHHHHHTTCSCEEEEEECSSB--TTTT
T ss_pred CCcEEEEeCcHHHHHcchHHHHHHHHhCCCeEEEEEECHHH--HhHH
Confidence 58999999999 99999999999999999999999999966 8876
No 81
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=98.41 E-value=1.9e-07 Score=106.61 Aligned_cols=117 Identities=15% Similarity=0.087 Sum_probs=80.7
Q ss_pred ccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcc--
Q psy14416 865 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD-- 942 (1065)
Q Consensus 865 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~-- 942 (1065)
+++|.+++.++ |+++|..... +++.|| ++.|||++ ++.
T Consensus 140 g~~G~~lp~A~--G~A~A~~~~~----~~~~vv---------------------------------~~~GDGa~-~~G~~ 179 (365)
T 2ozl_A 140 GIVGAQVPLGA--GIALACKYNG----KDEVCL---------------------------------TLYGDGAA-NQGQI 179 (365)
T ss_dssp CSTTTHHHHHH--HHHHHHHHHT----CCCCEE---------------------------------EEEETTGG-GCHHH
T ss_pred chhhhhhHHHH--HHHHHHHhcC----CCceEE---------------------------------EEECchhh-hccHH
Confidence 44577666666 8888774332 467788 99999999 553
Q ss_pred hhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeC--C
Q psy14416 943 ETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCT--T 1020 (1065)
Q Consensus 943 ~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~ 1020 (1065)
..++.++ ..+++|+++||.|| + |+...... .. ..+.||.+ ++||+.+++|+ +
T Consensus 180 ~Ealn~A-----~~~~lpvi~vv~NN-~-~g~~t~~~-~~----------------~~~~~~~~--ra~g~p~~~VdG~D 233 (365)
T 2ozl_A 180 FEAYNMA-----ALWKLPCIFICENN-R-YGMGTSVE-RA----------------AASTDYYK--RGDFIPGLRVDGMD 233 (365)
T ss_dssp HHHHHHH-----HHTTCCEEEEEEEC-S-EETTEEHH-HH----------------CSCCCGGG--TTTTSCEEEEETTC
T ss_pred HHHHHHH-----HHHCcCEEEEEECC-C-cccCCCcc-cc----------------cCCCCHHH--HhCCCCEEEEeCCC
Confidence 2356677 77999988777666 5 33211110 00 01234554 68999999998 7
Q ss_pred HHHHHHHHHHHHh---cCCCCEEEEEEeCC
Q psy14416 1021 VPQIKQAMKKCLQ---TTTRPSLINILINP 1047 (1065)
Q Consensus 1021 ~~~l~~~~~~~~~---~~~~~~li~~~~~~ 1047 (1065)
++++.++++++++ ..++|+|||+.+.+
T Consensus 234 ~~av~~a~~~A~~~~r~~~gP~lIe~~t~R 263 (365)
T 2ozl_A 234 ILCVREATRFAAAYCRSGKGPILMELQTYR 263 (365)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEEeec
Confidence 9999999988874 34899999999954
No 82
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=98.39 E-value=2.6e-07 Score=113.98 Aligned_cols=121 Identities=22% Similarity=0.268 Sum_probs=85.7
Q ss_pred cccCCCcchhHHHHHHhhhcccC----------CCCeEEEEeCCCCcc--ccHHHHHHhhhcCCCEEEEEEcCCeeeecc
Q psy14416 176 TFGTMGVGLGFALAAALYCNHYA----------PGKRVVCVQGDSAFG--FSGMELETLVRYRLPVILVIVNNNGIYGGF 243 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~~----------p~rrvV~l~GDGsf~--m~~~eL~t~vr~~lpivivV~NN~gy~~g~ 243 (1065)
..|+||+++|.|+|++++..... .+++|+|++|||+++ |+.++|.++.++++|.+++|+||++| ++
T Consensus 114 ~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~--~i 191 (680)
T 1gpu_A 114 TTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKI--TI 191 (680)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSE--ET
T ss_pred ccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchhhHHHHHHHHHHhCCCcEEEEEECCCc--eE
Confidence 46899999999999999965332 388999999999999 88899999999999988888888877 44
Q ss_pred ccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCC-chhhhHHHhhcCCceEEEccCCchHHHHHHH
Q psy14416 244 DEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGI-PVIELAMACQQEGIHYIGMRNEQAACYAAQA 322 (1065)
Q Consensus 244 ~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~-~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g 322 (1065)
+.+.- . .. . .-+++..+..|++.+.-+-|. ....+..++ -
T Consensus 192 ~~~~~---~-----~~------~----~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al---------------------~ 232 (680)
T 1gpu_A 192 DGATS---I-----SF------D----EDVAKRYEAYGWEVLYVENGNEDLAGIAKAI---------------------A 232 (680)
T ss_dssp TEEGG---G-----TC------C----CCHHHHHHHHTCEEEEESCTTTCHHHHHHHH---------------------H
T ss_pred ecccc---c-----cc------C----ccHHHHHHhcCCeEEEEecCCCCHHHHHHHH---------------------H
Confidence 33110 0 00 0 123455566777766556665 555554433 3
Q ss_pred HHHH-hCCCeEEEEec
Q psy14416 323 IGYL-TKKPGVCLVVS 337 (1065)
Q Consensus 323 ~ar~-tgkpgv~~~ts 337 (1065)
-++. +++|.++.+..
T Consensus 233 ~A~~~~~~P~lI~~~T 248 (680)
T 1gpu_A 233 QAKLSKDKPTLIKMTT 248 (680)
T ss_dssp HHHHCTTSCEEEEEEC
T ss_pred HHHHCCCCCEEEEEEe
Confidence 3444 67899888754
No 83
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=98.33 E-value=3.9e-07 Score=112.20 Aligned_cols=121 Identities=21% Similarity=0.157 Sum_probs=85.9
Q ss_pred cccCCCcchhHHHHHHhhhcccC----------CCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCeeeecc
Q psy14416 176 TFGTMGVGLGFALAAALYCNHYA----------PGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNGIYGGF 243 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~~----------p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~gy~~g~ 243 (1065)
..|+||++++.|+|++++..... .+++|+|++|||++++. .+++.++.+++||.+++|+||++| ++
T Consensus 114 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~d~N~~--~i 191 (673)
T 1r9j_A 114 TTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYI--SI 191 (673)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECSB--CS
T ss_pred ccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccHHHHHHHHHHHhCCCcEEEEEECCCC--cc
Confidence 46999999999999999965432 58999999999999954 788999999999988888888877 54
Q ss_pred ccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecC-CchhhhHHHhhcCCceEEEccCCchHHHHHHH
Q psy14416 244 DEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVG-IPVIELAMACQQEGIHYIGMRNEQAACYAAQA 322 (1065)
Q Consensus 244 ~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG-~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g 322 (1065)
+.+.-. . + .+-+.+..+..|.+.+.-+-| .....+..++ -
T Consensus 192 ~~~~~~---~---~------------~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~Al---------------------~ 232 (673)
T 1r9j_A 192 DGSTSL---S---F------------TEQCHQKYVAMGFHVIEVKNGDTDYEGLRKAL---------------------A 232 (673)
T ss_dssp SSBGGG---T---C------------CCCHHHHHHHTTCEEEEESCTTTCHHHHHHHH---------------------H
T ss_pred ccchhh---c---c------------CHhHHHHHHHCCCeEEEEeCCCCCHHHHHHHH---------------------H
Confidence 431110 0 0 012456667778777656666 5554444333 3
Q ss_pred HHHH-hCCCeEEEEec
Q psy14416 323 IGYL-TKKPGVCLVVS 337 (1065)
Q Consensus 323 ~ar~-tgkpgv~~~ts 337 (1065)
-++. +++|.++.+..
T Consensus 233 ~A~~~~~~P~lI~~~T 248 (673)
T 1r9j_A 233 EAKATKGKPKMIVQTT 248 (673)
T ss_dssp HHHHCCSSCEEEEEEC
T ss_pred HHHHcCCCCEEEEEec
Confidence 3343 78899888764
No 84
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=98.30 E-value=5.5e-07 Score=102.77 Aligned_cols=67 Identities=21% Similarity=0.311 Sum_probs=58.0
Q ss_pred cccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCeeeecccc
Q psy14416 176 TFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNGIYGGFDE 245 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~gy~~g~~~ 245 (1065)
..|+||+++|.|+|+++|.+...+++.|||++|||++++. .++|.++..+++|+++||.|| +| |+..
T Consensus 138 ~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN-~~--g~~t 206 (365)
T 2ozl_A 138 GNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENN-RY--GMGT 206 (365)
T ss_dssp CCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEEC-SE--ETTE
T ss_pred CcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHHHHHHHCcCEEEEEECC-Cc--ccCC
Confidence 4589999999999999998776789999999999999985 568999999999998888777 46 5543
No 85
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=97.95 E-value=3.6e-06 Score=103.41 Aligned_cols=95 Identities=15% Similarity=0.177 Sum_probs=68.0
Q ss_pred EEeccccccCcch--hhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHH
Q psy14416 931 IVNNNGIYGGFDE--TTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMM 1008 (1065)
Q Consensus 931 ~~~gd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1065)
+++|||++ +-.. -.+..+ .+++||-.|+|+|||++ + +. +... .....|+.+.+
T Consensus 173 ~~~GDG~l-~eG~~~EAl~~A-----~~~~L~nli~i~d~N~~-s-i~----------~~~~-------~~~~~~~~~~~ 227 (700)
T 3rim_A 173 VIASDGDI-EEGVTSEASSLA-----AVQQLGNLIVFYDRNQI-S-IE----------DDTN-------IALCEDTAARY 227 (700)
T ss_dssp EEEEHHHH-HSHHHHHHHHHH-----HHTTCTTEEEEEEECSE-E-TT----------EEGG-------GTCCCCHHHHH
T ss_pred EEECCccc-ccChHHHHHHHH-----HHcCCCcEEEEEECCCc-c-cc----------cchh-------hccchhHHHHH
Confidence 99999999 3221 134455 67899855555666673 1 11 1000 11246899999
Q ss_pred HHcCCCeEee---CCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q psy14416 1009 AVFGHDGYLC---TTVPQIKQAMKKCLQTTTRPSLINILINPSAD 1050 (1065)
Q Consensus 1009 ~~~g~~~~~~---~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 1050 (1065)
++||.++..| +++++|.+|++++.+.+++|+||++.|-+...
T Consensus 228 ~a~G~~~~~V~DG~D~~al~~Al~~A~~~~~~P~lI~~~T~kG~G 272 (700)
T 3rim_A 228 RAYGWHVQEVEGGENVVGIEEAIANAQAVTDRPSFIALRTVIGYP 272 (700)
T ss_dssp HHHTCEEEEEECTTCHHHHHHHHHHHHHCCSSCEEEEEECCTTTT
T ss_pred HHcCCeEEEECCCCCHHHHHHHHHHHHHcCCCCEEEEEEEEeeec
Confidence 9999999999 59999999999998745899999999976543
No 86
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=97.76 E-value=1.8e-05 Score=97.25 Aligned_cols=120 Identities=18% Similarity=0.148 Sum_probs=82.6
Q ss_pred cccCCCcchhHHHHHHhhhccc-------------CCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCeee
Q psy14416 176 TFGTMGVGLGFALAAALYCNHY-------------APGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNGIY 240 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~-------------~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~gy~ 240 (1065)
..|++|++++.|+|+++|.+.. ..+++|+|++|||+++.. -+.+.++..++||.+|+|+||++|
T Consensus 131 ~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~- 209 (700)
T 3rim_A 131 TTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYDRNQI- 209 (700)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSE-
T ss_pred cccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCcccccChHHHHHHHHHHcCCCcEEEEEECCCc-
Confidence 3689999999999999997653 347899999999999954 578999999999977777777766
Q ss_pred eccccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHH
Q psy14416 241 GGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAA 320 (1065)
Q Consensus 241 ~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A 320 (1065)
.++.+. . .. + .+-+.+..+..|.+.+-..-|.....+.. |
T Consensus 210 -si~~~~-~---~~--~------------~~~~~~~~~a~G~~~~~V~DG~D~~al~~---------------------A 249 (700)
T 3rim_A 210 -SIEDDT-N---IA--L------------CEDTAARYRAYGWHVQEVEGGENVVGIEE---------------------A 249 (700)
T ss_dssp -ETTEEG-G---GT--C------------CCCHHHHHHHHTCEEEEEECTTCHHHHHH---------------------H
T ss_pred -ccccch-h---hc--c------------chhHHHHHHHcCCeEEEECCCCCHHHHHH---------------------H
Confidence 332211 1 00 0 12245566677877664226665555443 3
Q ss_pred HHHHHH-hCCCeEEEEe
Q psy14416 321 QAIGYL-TKKPGVCLVV 336 (1065)
Q Consensus 321 ~g~ar~-tgkpgv~~~t 336 (1065)
..-++. +++|.++.|.
T Consensus 250 l~~A~~~~~~P~lI~~~ 266 (700)
T 3rim_A 250 IANAQAVTDRPSFIALR 266 (700)
T ss_dssp HHHHHHCCSSCEEEEEE
T ss_pred HHHHHHcCCCCEEEEEE
Confidence 344555 6899998875
No 87
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=97.74 E-value=5.6e-05 Score=95.10 Aligned_cols=100 Identities=16% Similarity=0.094 Sum_probs=74.5
Q ss_pred cccCCCcchhHHHHHHhhhcc-------cCCCCeEEEEeCCCCcc--ccHHHHHHhhhcCCCEEEEEEcCCeeeeccccc
Q psy14416 176 TFGTMGVGLGFALAAALYCNH-------YAPGKRVVCVQGDSAFG--FSGMELETLVRYRLPVILVIVNNNGIYGGFDEA 246 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~-------~~p~rrvV~l~GDGsf~--m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~~ 246 (1065)
.-|+||.+++.|+|++++.+. ..++++|+|++|||+++ |+.+.|..+.+++|+.+++|+||++| .++.
T Consensus 190 ~tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~--si~~- 266 (886)
T 2qtc_A 190 PTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQ--RLDG- 266 (886)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSB--CSSS-
T ss_pred cccccCccHHHHHHHHHHhhhhcccccccCCCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCc--ccCC-
Confidence 358999999999999998764 45789999999999999 67899999999999878888888765 2211
Q ss_pred hhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCch
Q psy14416 247 TYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPV 293 (1065)
Q Consensus 247 ~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~ 293 (1065)
. ........+.|.+..+..|...+-..-|+..
T Consensus 267 -----------~----v~~~~~~~~~l~~~~~~~G~~~~~v~~g~~~ 298 (886)
T 2qtc_A 267 -----------P----VTGNGKIINELEGIFEGAGWNVIKVMWGSRW 298 (886)
T ss_dssp -----------B----SCTTSCHHHHHHHHHHHTTCEEEEECBCTTH
T ss_pred -----------C----ccccccccHHHHHHHHhCCCCEEEEecchhH
Confidence 0 0011234567777788888877766544433
No 88
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=97.60 E-value=6.7e-05 Score=94.19 Aligned_cols=66 Identities=20% Similarity=0.108 Sum_probs=57.0
Q ss_pred ccCCCcchhHHHHHHhhhcccC----------CCCeEEEEeCCCCc--cccHHH-HHHhhhcCCC---EEEEEEcCCeee
Q psy14416 177 FGTMGVGLGFALAAALYCNHYA----------PGKRVVCVQGDSAF--GFSGME-LETLVRYRLP---VILVIVNNNGIY 240 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~----------p~rrvV~l~GDGsf--~m~~~e-L~t~vr~~lp---ivivV~NN~gy~ 240 (1065)
-++||+++|.|+|+++|.+... .+..++|+.|||+| ++..+| |.++..+++| +++||.|| +|
T Consensus 244 ~s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN-~~- 321 (868)
T 2yic_A 244 PSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNN-QI- 321 (868)
T ss_dssp CSSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEEC-SC-
T ss_pred CccccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcC-Cc-
Confidence 4789999999999999987643 56789999999997 788888 9999999999 99999999 56
Q ss_pred ecccc
Q psy14416 241 GGFDE 245 (1065)
Q Consensus 241 ~g~~~ 245 (1065)
|+..
T Consensus 322 -g~st 325 (868)
T 2yic_A 322 -GFTT 325 (868)
T ss_dssp -BTTB
T ss_pred -cccc
Confidence 6654
No 89
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=97.41 E-value=6.2e-05 Score=96.82 Aligned_cols=66 Identities=20% Similarity=0.108 Sum_probs=56.6
Q ss_pred ccCCCcchhHHHHHHhhhcccC----------CCCeEEEEeCCCCc--cccHHH-HHHhhhcCCC---EEEEEEcCCeee
Q psy14416 177 FGTMGVGLGFALAAALYCNHYA----------PGKRVVCVQGDSAF--GFSGME-LETLVRYRLP---VILVIVNNNGIY 240 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~----------p~rrvV~l~GDGsf--~m~~~e-L~t~vr~~lp---ivivV~NN~gy~ 240 (1065)
-+++|.++|.|+|+++|.+... .++.++|+.|||+| +...+| |.++..+++| +++||.|| +|
T Consensus 489 ~s~Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN-~~- 566 (1113)
T 2xt6_A 489 PSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNN-QI- 566 (1113)
T ss_dssp CSSTTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEEC-SC-
T ss_pred CccccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeC-Cc-
Confidence 4678999999999999987654 56889999999998 888888 9999999999 99999998 45
Q ss_pred ecccc
Q psy14416 241 GGFDE 245 (1065)
Q Consensus 241 ~g~~~ 245 (1065)
|+..
T Consensus 567 -gist 570 (1113)
T 2xt6_A 567 -GFTT 570 (1113)
T ss_dssp -BTTB
T ss_pred -cccc
Confidence 6654
No 90
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=97.33 E-value=0.00012 Score=91.87 Aligned_cols=93 Identities=13% Similarity=0.131 Sum_probs=65.9
Q ss_pred EEeccccc-cCcchhh-HHHhhccCccccCCC---EEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHH
Q psy14416 931 IVNNNGIY-GGFDETT-YASIVESGEVTTVLP---VILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYE 1005 (1065)
Q Consensus 931 ~~~gd~~~-~~~~~~~-~~~~~~~~~~~~~~~---~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1005 (1065)
++.|||+| .+...+| +..+ ..+++| ++.||.|| ++ +.-... ... . ...++.
T Consensus 282 ~~~GDGa~~~eG~v~Ealn~A-----~~~~lp~g~vi~iv~NN-~~-g~st~~-~~~-------------~---s~~~~~ 337 (868)
T 2yic_A 282 MLHGDAAFAGQGVVAETLNLA-----LLRGYRTGGTIHIVVNN-QI-GFTTAP-TDS-------------R---SSEYCT 337 (868)
T ss_dssp EEEEHHHHHHCHHHHHHHTTT-----TCTTTCCSCCEEEEEEC-SC-BTTBCH-HHH-------------C---SSSSTT
T ss_pred EEECCcccccccHHHHHHHHH-----HhcCCCCCCeEEEEEcC-Cc-ccccCc-ccc-------------c---cccCHH
Confidence 99999998 4555555 4444 678898 99999988 52 211111 000 0 113355
Q ss_pred HHHHHcCCCeEeeC--CHHHHHHHHHHHHh---cCCCCEEEEEEeCC
Q psy14416 1006 KMMAVFGHDGYLCT--TVPQIKQAMKKCLQ---TTTRPSLINILINP 1047 (1065)
Q Consensus 1006 ~~~~~~g~~~~~~~--~~~~l~~~~~~~~~---~~~~~~li~~~~~~ 1047 (1065)
+.|++||+.+++|+ +++++.++++++++ ..++|+|||+.+-+
T Consensus 338 ~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR 384 (868)
T 2yic_A 338 DVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYR 384 (868)
T ss_dssp GGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_pred HHHHhCCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeec
Confidence 68999999999998 58999999988874 23899999999954
No 91
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=97.00 E-value=0.00059 Score=86.20 Aligned_cols=60 Identities=12% Similarity=0.069 Sum_probs=51.5
Q ss_pred cCCCcchhHHHHHHhhhcccC-----CCCeEEEEeCCCCc--cccHHH-HHHhhhcCCC---EEEEEEcCC
Q psy14416 178 GTMGVGLGFALAAALYCNHYA-----PGKRVVCVQGDSAF--GFSGME-LETLVRYRLP---VILVIVNNN 237 (1065)
Q Consensus 178 gsmG~gl~~AlGaala~~~~~-----p~rrvV~l~GDGsf--~m~~~e-L~t~vr~~lp---ivivV~NN~ 237 (1065)
+.+|.++|.|+|+++|.+... .+..+||++|||+| +....| |..+..+++| +++||.||.
T Consensus 321 shlg~~~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~ 391 (933)
T 2jgd_A 321 SHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQ 391 (933)
T ss_dssp SSTTCHHHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC
T ss_pred cccccccCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 356788999999999977653 56789999999998 777888 9999999999 899888886
No 92
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=96.98 E-value=0.00046 Score=86.84 Aligned_cols=33 Identities=18% Similarity=0.097 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 1020 TVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 1020 ~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
+.++|.+|++++.+..++|+||++.|-+.....
T Consensus 365 D~~~l~~a~~~A~~~~~~PtlI~~~T~KG~G~~ 397 (886)
T 2qtc_A 365 DPKKIYAAFKKAQETKGKATVILAHTIKGYGMG 397 (886)
T ss_dssp CHHHHHHHHHHHHHCCSSCEEEEEECCTTTTCT
T ss_pred CHHHHHHHHHHHHHcCCCCEEEEEeeeeccccc
Confidence 788999999999876469999999997665543
No 93
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=96.79 E-value=0.001 Score=84.15 Aligned_cols=94 Identities=9% Similarity=0.073 Sum_probs=61.8
Q ss_pred EEeccccc-cCcchhh-HHHhhccCccccCCC---EEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHH
Q psy14416 931 IVNNNGIY-GGFDETT-YASIVESGEVTTVLP---VILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYE 1005 (1065)
Q Consensus 931 ~~~gd~~~-~~~~~~~-~~~~~~~~~~~~~~~---~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1005 (1065)
++.|||+| .+-...| +-.+ ...++| +++||.||+ + +.-.... . ......++.
T Consensus 353 ~v~GDGa~a~qG~~~Ealn~A-----~~~~lp~gg~I~vv~nN~-~-~ist~~~-------------~---~~~~~~~~~ 409 (933)
T 2jgd_A 353 TIHGDAAVTGQGVVQETLNMS-----KARGYEVGGTVRIVINNQ-V-GFTTSNP-------------L---DARSTPYCT 409 (933)
T ss_dssp EEEEHHHHHHCTHHHHHHHHT-----TSTTTCCSCCEEEEEECC---------------------------------CGG
T ss_pred EEECCcccccCCHHHHHHHHh-----hccCCCCCceEEEEEeCC-c-cccCCCH-------------H---hcccchhHH
Confidence 99999999 5555555 4444 667899 888887774 2 2111000 0 001123466
Q ss_pred HHHHHcCCCeEeeCC--HHHHHHHHHHHHh---cCCCCEEEEEEeCC
Q psy14416 1006 KMMAVFGHDGYLCTT--VPQIKQAMKKCLQ---TTTRPSLINILINP 1047 (1065)
Q Consensus 1006 ~~~~~~g~~~~~~~~--~~~l~~~~~~~~~---~~~~~~li~~~~~~ 1047 (1065)
+.+++||+.+++|+- ++++.++++++.+ ...+|+|||+.+-+
T Consensus 410 ~~a~a~g~p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR 456 (933)
T 2jgd_A 410 DIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYR 456 (933)
T ss_dssp GGGGTTTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_pred HHHHHcCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeee
Confidence 778999999999865 7889888888873 33799999999855
No 94
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=96.62 E-value=0.0015 Score=84.29 Aligned_cols=93 Identities=16% Similarity=0.196 Sum_probs=64.6
Q ss_pred EEeccccc-cCcchhh-HHHhhccCccccCCC---EEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHH
Q psy14416 931 IVNNNGIY-GGFDETT-YASIVESGEVTTVLP---VILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYE 1005 (1065)
Q Consensus 931 ~~~gd~~~-~~~~~~~-~~~~~~~~~~~~~~~---~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1005 (1065)
++.|||+| .+...+| +..+ ...++| ++.||.|| ++ + +....... .+ ..++.
T Consensus 527 ~~~GDGa~~~eG~~~Ealn~A-----~~~~lp~g~vi~iv~NN-~~-g-ist~~~~~-------------~s---~~~~~ 582 (1113)
T 2xt6_A 527 MLHGDAAFAGQGVVAETLNLA-----LLRGYRTGGTIHIVVNN-QI-G-FTTAPTDS-------------RS---SEYCT 582 (1113)
T ss_dssp EEEEHHHHHHCTHHHHHHTTT-----TCTTTCCSCCEEEEEEC-SC-B-TTBCHHHH-------------CS---SSSTT
T ss_pred EEECCcccccccHHHHHHHHH-----hhcCCCCCCeEEEEEeC-Cc-c-cccCcccc-------------cc---ccCHH
Confidence 99999998 4555555 3333 668888 99999988 52 2 11110000 00 12234
Q ss_pred HHHHHcCCCeEeeC--CHHHHHHHHHHHHh---cCCCCEEEEEEeCC
Q psy14416 1006 KMMAVFGHDGYLCT--TVPQIKQAMKKCLQ---TTTRPSLINILINP 1047 (1065)
Q Consensus 1006 ~~~~~~g~~~~~~~--~~~~l~~~~~~~~~---~~~~~~li~~~~~~ 1047 (1065)
+.+++||+.+++|+ +++++.++++++++ ..++|+|||+.+-+
T Consensus 583 ~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR 629 (1113)
T 2xt6_A 583 DVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYR 629 (1113)
T ss_dssp GGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_pred HHHHhcCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeEc
Confidence 67899999999999 99999999988875 23799999999954
No 95
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=94.47 E-value=0.16 Score=63.19 Aligned_cols=99 Identities=18% Similarity=0.190 Sum_probs=65.9
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc----HHHHHH-hhhcCCCEEEEEEcCCeeeeccccchhhhh
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS----GMELET-LVRYRLPVILVIVNNNGIYGGFDEATYAWL 251 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~----~~eL~t-~vr~~lpivivV~NN~gy~~g~~~~~~~~~ 251 (1065)
-|++|+|++.|+|+++. +|+.+|+|++|||...=. ..|+.. +..+++..++.|+++++| ..+
T Consensus 174 tG~LGqGls~AvG~A~~----~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~N~~--~i~------- 240 (845)
T 3ahc_A 174 GGELGYALSHAYGAVMN----NPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNGY--KIA------- 240 (845)
T ss_dssp CSSTTCHHHHHHHHHTT----CTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEECSB--SSS-------
T ss_pred CCCccchHhHHhhhhhc----CCCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEECCCC--cCC-------
Confidence 58999999999999987 799999999999994331 111222 335667777788877655 111
Q ss_pred hhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecC-C--chhhhH
Q psy14416 252 DIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVG-I--PVIELA 297 (1065)
Q Consensus 252 ~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG-~--~~~~l~ 297 (1065)
+. ........+-+.+.++..|-+.+.-+-| . ....+.
T Consensus 241 ------g~---t~l~~~~~e~l~~rf~a~Gw~v~~~vdG~~~~D~~~i~ 280 (845)
T 3ahc_A 241 ------NP---TILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIH 280 (845)
T ss_dssp ------SB---CHHHHSCHHHHHHHHHHTTEEEEEEECSSSSCCHHHHH
T ss_pred ------CC---ccccccCcHHHHHHHHHCCCEEeEEeCCCCCcCHHHHH
Confidence 10 0001112567899999999998745678 5 444443
No 96
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=94.20 E-value=0.1 Score=57.08 Aligned_cols=87 Identities=23% Similarity=0.261 Sum_probs=60.4
Q ss_pred HhhhcCCCEEEEeCCccccccccCCCccccCCCeEEEecCChhh-cc-cccccceEEEcCHHHHHHHHHHhhcccccCCC
Q psy14416 553 THALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEE-LH-NSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWS 630 (1065)
Q Consensus 553 ~~al~~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~-~~-~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~ 630 (1065)
...+.+||++|++|+++.-....+.......+..++.|+.++.. +. .....|+.+.+|+.+.+..|.+.+.
T Consensus 192 ~~~~~~aDlllviGTSl~V~Paa~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~~~g~~~~~~~~L~~~lg------- 264 (285)
T 3glr_A 192 VVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHPRSRDVAQLGDVVHGVESLVELLG------- 264 (285)
T ss_dssp HHHHHHCSEEEEESCCCCEETTGGGGGSSCTTSCEEEEESSCCTHHHHSCCTTEEEEESCHHHHHHHHHHHHT-------
T ss_pred HHHHhcCCEEEEeCCCCccccHHHHHHHHhCCCcEEEECCCCcCccccCCCCccEEEcCCHHHHHHHHHHHhC-------
Confidence 44567999999999998654444444333445678889998753 11 2345789999999999999998875
Q ss_pred CCCCchHHHHHHHHHHhhhhcc
Q psy14416 631 FSATSPWWQELKLKCQTNRQVK 652 (1065)
Q Consensus 631 ~~~~~~W~~~~~~~~~~~~~~~ 652 (1065)
|.+++.+..+...+.+
T Consensus 265 ------w~~el~~~~~~~~~~~ 280 (285)
T 3glr_A 265 ------WTEEMRDLVQRETGKL 280 (285)
T ss_dssp ------CHHHHHHHHHHHHHHC
T ss_pred ------CHHHHHHHHHhhHhhh
Confidence 5666666555544443
No 97
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=93.15 E-value=0.11 Score=57.96 Aligned_cols=72 Identities=13% Similarity=0.140 Sum_probs=50.5
Q ss_pred HHhhhcCCCEEEEeCCccccccccCCCccccCCCeEEEecCChhhcccc------------------cccceEEEcCHHH
Q psy14416 552 RTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNS------------------VQAAVAIQSDVRL 613 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~------------------~~~~~~I~~D~~~ 613 (1065)
....+.+||++|.+|+++.-....++.........++.||.++...+.. ...++.+.+|+.+
T Consensus 214 a~~~~~~aDlllviGTSl~V~P~a~l~~~~~~~~~~v~IN~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~gd~~~ 293 (323)
T 1j8f_A 214 MQSDFLKVDLLLVMGTSLQVQPFASLISKAPLSTPRLLINKEKAGQSDPFLGMIMGLGGGMDFDSKKAYRDVAWLGECDQ 293 (323)
T ss_dssp HHHGGGSCSEEEEESSCSCSHHHHHHHTTSCTTCCEEEEESSCCCCCCHHHHHHHHHHTCCCSSSTTCCSEEEEESCHHH
T ss_pred HHHHHhCCCEEEEEeeCcccHHHHHHHHHHHcCCcEEEEeCCCCCCCcccccccccccccccccccccceeEEEeCCHHH
Confidence 3456789999999999987544333333333334566788877654332 2368899999999
Q ss_pred HHHHHHHhhc
Q psy14416 614 TVQQLKQMLS 623 (1065)
Q Consensus 614 ~L~~L~~~l~ 623 (1065)
++..|.+.+.
T Consensus 294 ~l~~L~~~lg 303 (323)
T 1j8f_A 294 GCLALAELLG 303 (323)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 9999988775
No 98
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=90.52 E-value=0.36 Score=53.59 Aligned_cols=113 Identities=17% Similarity=0.187 Sum_probs=79.5
Q ss_pred cEEEEccCCCchhHHHHHHHHHhhcCCCEEecCC--CCCCCCCCCcccccHHHHhhhcCCCEEEEeCCccccccccCCCc
Q psy14416 502 PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPM--GKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWILHFGRAP 579 (1065)
Q Consensus 502 PvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~--gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~~~~~g~~~ 579 (1065)
.++-.|+|....+..+.+.+||+++|.-|-+|-- -.|.+|. .+.+|..... =.|||-|.+|-+=.-..+.|.
T Consensus 199 ivVsgGrG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~--~~QVGqTGk~--V~P~lYiA~GISGAiQHlaGm-- 272 (315)
T 1efv_A 199 VVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPN--DMQVGQTGKI--VAPELYIAVGISGAIQHLAGM-- 272 (315)
T ss_dssp EEEEECGGGCSTGGGHHHHHHHHHHTCEEEECHHHHHTTSSCG--GGBBSTTSBC--CCCSEEEEESCCCCHHHHTTT--
T ss_pred EEEEcCCcCCChHHHHHHHHHHHHhCCceeecHHHHhCCCCCH--HheeccCCcc--cCcceEEEecccCcHHHHhhc--
Confidence 3444555665555668999999999998877642 2355554 4456654432 279999999976544444454
Q ss_pred cccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 580 RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 580 ~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
.....+|-||.|+.. --+...|..|++|..+++.+|.++++
T Consensus 273 --~~s~~IVAIN~D~~A-pIf~~ADygiVgDl~~v~P~L~~~l~ 313 (315)
T 1efv_A 273 --KDSKTIVAINKDPEA-PIFQVADYGIVADLFKVVPEMTEILK 313 (315)
T ss_dssp --TTCSEEEEEESCTTC-GGGGTCSEEEESCHHHHHHHHHHHTC
T ss_pred --ccCCEEEEEeCCCCC-CcchhcCeEEeeeHHHHHHHHHHHHh
Confidence 234578889999863 22456899999999999999999885
No 99
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=90.43 E-value=0.39 Score=54.22 Aligned_cols=69 Identities=10% Similarity=0.071 Sum_probs=52.1
Q ss_pred HHhhhcCCCEEEEeCCccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 552 RTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
..+.+.+||++|.+|+++.-....++......+..++.|+.++...+ ..++.|.+++.+++..|.+.+.
T Consensus 249 a~~~~~~aDllLviGTSL~V~Paa~lv~~~~~~~~~v~IN~~~t~~~---~~dl~i~g~~~~vl~~L~~~lg 317 (354)
T 2hjh_A 249 IREDILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKHA---EFDLSLLGYCDDIAAMVAQKCG 317 (354)
T ss_dssp HHHHTTTCCEEEEESCCCCEETGGGHHHHSCTTSCEEEEESSCCTTS---CCSEEEESCHHHHHHHHHHHHT
T ss_pred HHHHHhhCCEEEEECcCCCchhHHHHHHHHhcCCcEEEEcCCCCCCC---CcCEEEeCCHHHHHHHHHHHcC
Confidence 34567899999999999875444444333334567888999886533 4789999999999999999876
No 100
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=90.25 E-value=0.41 Score=59.58 Aligned_cols=134 Identities=16% Similarity=0.143 Sum_probs=82.0
Q ss_pred cceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEE
Q psy14416 851 GEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 930 (1065)
Q Consensus 851 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1065)
|++....|=+-..-|.+|.+++.+. |+++.. |+..|+
T Consensus 161 gHp~~~tpGve~~tG~LGqGls~Av--G~A~~~--------~~~~v~--------------------------------- 197 (845)
T 3ahc_A 161 SHFAPETPGSIHEGGELGYALSHAY--GAVMNN--------PSLFVP--------------------------------- 197 (845)
T ss_dssp SSCCTTSTTCSCCCSSTTCHHHHHH--HHHTTC--------TTCEEE---------------------------------
T ss_pred CCCCCCCCCeecCCCCccchHhHHh--hhhhcC--------CCCeEE---------------------------------
Confidence 4444445545555566666665555 666655 778888
Q ss_pred EEeccccccCcchhhHHHhhccCc--cccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCC--CCCccHHH
Q psy14416 931 IVNNNGIYGGFDETTYASIVESGE--VTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSL--GPSLRYEK 1006 (1065)
Q Consensus 931 ~~~gd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 1006 (1065)
+++|||-. . ...|+...|... ..+++.-.++|++.||+ . ++. ++.+ ...-++.+
T Consensus 198 ~~~GDGe~-e--~GsLAg~wea~~~~~~~~l~nl~~i~D~N~~-~-i~g-----------------~t~l~~~~~e~l~~ 255 (845)
T 3ahc_A 198 CIIGDGEA-E--TGPLATGWQSNKLVNPRTDGIVLPILHLNGY-K-IAN-----------------PTILARISDEELHD 255 (845)
T ss_dssp EEEETTGG-G--SHHHHHHGGGGGSCCTTTSCEEEEEEEECSB-S-SSS-----------------BCHHHHSCHHHHHH
T ss_pred EEECCCch-h--hhcchhhhHHhhhhhhhcCCCEEEEEECCCC-c-CCC-----------------CccccccCcHHHHH
Confidence 99999986 1 223333322222 34566667777777784 1 111 1111 12356788
Q ss_pred HHHHcCCCeE-eeC-----CHHHHHHHHHHHH---------------h-cCCCC--EEEEEEeCCCC
Q psy14416 1007 MMAVFGHDGY-LCT-----TVPQIKQAMKKCL---------------Q-TTTRP--SLINILINPSA 1049 (1065)
Q Consensus 1007 ~~~~~g~~~~-~~~-----~~~~l~~~~~~~~---------------~-~~~~~--~li~~~~~~~~ 1049 (1065)
..++||.+-+ .|. +.+++.++|.+++ + .+++| ++|-+.|....
T Consensus 256 rf~a~Gw~v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~Ii~rT~kG~ 322 (845)
T 3ahc_A 256 FFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPMLIFRTPKGW 322 (845)
T ss_dssp HHHHTTEEEEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEEEEECCTTT
T ss_pred HHHHCCCEEeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEECcccC
Confidence 8999999887 654 6788887765433 2 13689 99999997665
No 101
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=89.76 E-value=0.49 Score=55.04 Aligned_cols=69 Identities=10% Similarity=0.075 Sum_probs=52.1
Q ss_pred HHhhhcCCCEEEEeCCccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 552 RTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
..+.+.+||++|++|+++.-....++....+...+++.|+.++... ...|+.+.++..+++..|.+.+.
T Consensus 387 a~~~~~~aDLlLVIGTSL~VyPaA~Lv~~a~~~~p~ViIN~ept~~---~~~Dl~l~G~cdevv~~L~~~LG 455 (492)
T 4iao_A 387 IREDILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKH---AEFDLSLLGYCDDIAAMVAQKCG 455 (492)
T ss_dssp HHHHTTTCSEEEEESCCCCEETGGGHHHHSBTTSCEEEEESSCCTT---SCCSEEEESCHHHHHHHHHHHTT
T ss_pred HHHHHhhCCEEEEeccCCCccchhhHHHHHhcCCcEEEEcCCCCCC---CCccEEEeCCHHHHHHHHHHHhC
Confidence 3456789999999999987544444433334456788899988653 24699999999999999999886
No 102
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=89.64 E-value=0.69 Score=46.72 Aligned_cols=133 Identities=15% Similarity=0.238 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhc---CCCEE--ecCCCCCCCCCCCccccc------------H
Q psy14416 488 ELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSF---NLPFL--PTPMGKGVVPDAHPNCVS------------A 550 (1065)
Q Consensus 488 ~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~l---g~PV~--tt~~gkg~v~~~hpl~lg------------~ 550 (1065)
..++++++|..|++.+|+-|.|..-+++...+++|+++| |.-|- --|.+ |..|-+-.-++. .
T Consensus 35 ~~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVA-GRMPGhMNVLLAEA~VPYd~v~EMd 113 (203)
T 2fsv_C 35 SAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVA-GRMPGHMNVLLAEANVPYDEVFELE 113 (203)
T ss_dssp CHHHHHHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTC-SSSTTHHHHHHHHTTCCGGGEEEHH
T ss_pred CHHHHHHHHHhCCcEEEEcCchHhHHHHHHHHHHHHHHHHHcCCeEEEEecccc-cCCCCCccEEEEEecCCHHHHhhHH
Confidence 456788999999999999998877666666666666655 55442 22222 233321111111 1
Q ss_pred HHHhhhcCCCEEEEeCCccc---------cccccCCC--ccccCCCeEEEecCChh----hcc--ccc-ccceEEEcCHH
Q psy14416 551 ARTHALQNADLVLLLGARLN---------WILHFGRA--PRFKSNVKIIQVDLNAE----ELH--NSV-QAAVAIQSDVR 612 (1065)
Q Consensus 551 ~~~~al~~aDlVI~iG~~~~---------~~~~~g~~--~~~~~~~~iI~Vd~d~~----~~~--~~~-~~~~~I~~D~~ 612 (1065)
..+..+.+.|++|++|+.-. ....+|.+ .-| +.+++|.+..+-. -++ -++ .-+.-+.+|++
T Consensus 114 eIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~-kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDAK 192 (203)
T 2fsv_C 114 EINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVW-KAGTVLFIKRSMASGYAGVENELFFRNNTMMLFGDAK 192 (203)
T ss_dssp HHGGGSTTCSEEEEESCCGGGCGGGTSCTTSTTTTCCCCCGG-GSSEEEEEESSSCCCTTCCCCGGGGSTTEEEEESCHH
T ss_pred HHhhhhhhcCEEEEeccccccCchhhcCCCCCcCCCeeeccc-cCCEEEEEECCCCCCcCCCcCcceecCCceEEeccHH
Confidence 34567789999999996532 11233432 112 2345555544321 111 122 34556899999
Q ss_pred HHHHHHHHhh
Q psy14416 613 LTVQQLKQML 622 (1065)
Q Consensus 613 ~~L~~L~~~l 622 (1065)
..+++|...+
T Consensus 193 ~~~~~l~~~l 202 (203)
T 2fsv_C 193 KMTEQIVQAM 202 (203)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 9999988765
No 103
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=89.59 E-value=0.74 Score=45.51 Aligned_cols=131 Identities=15% Similarity=0.209 Sum_probs=76.4
Q ss_pred HHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhc---CCCEE--ecCCCCCCCCCCCccccc------------HH
Q psy14416 489 LKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSF---NLPFL--PTPMGKGVVPDAHPNCVS------------AA 551 (1065)
Q Consensus 489 v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~l---g~PV~--tt~~gkg~v~~~hpl~lg------------~~ 551 (1065)
.++++++|..|++.+|+-|.|..-+++...+++|++.| |.-|- --|.+ |..|.+-.-++. ..
T Consensus 13 ~~~~a~~l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVA-GRMPGhmNVLLAEA~VPYd~v~EMde 91 (180)
T 1pno_A 13 AEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVA-GRMPGHMNVLLAEANVPYDEVFELEE 91 (180)
T ss_dssp HHHHHHHHHTCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTC-TTSTTHHHHHHHHTTCCGGGEEEHHH
T ss_pred HHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEecccc-ccCCCcceEEEEeeCCCHHHHhhHHH
Confidence 56788999999999999998877666666666666655 55442 22222 233321111111 13
Q ss_pred HHhhhcCCCEEEEeCCcccc---------ccccCCC--ccccCCCeEEEecCChhhcc-------ccc-ccceEEEcCHH
Q psy14416 552 RTHALQNADLVLLLGARLNW---------ILHFGRA--PRFKSNVKIIQVDLNAEELH-------NSV-QAAVAIQSDVR 612 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~~---------~~~~g~~--~~~~~~~~iI~Vd~d~~~~~-------~~~-~~~~~I~~D~~ 612 (1065)
.+..+.+.|++|++|+.-.- ....|.+ .-| +.+++|.+..+-. .+ -++ .-+.-+.+|++
T Consensus 92 IN~df~~tDv~lVIGANDvvNpaA~~dp~SpI~GMPvl~v~-kAk~ViV~KRsm~-~GyAgv~NpLF~~~nt~MlfGDAK 169 (180)
T 1pno_A 92 INSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVE-KAGTVLFIKRSMA-SGYAGVENELFFRNNTMMLFGDAK 169 (180)
T ss_dssp HGGGGGGCSEEEEESCCGGGCGGGTTCTTSTTTTCCCCCGG-GSSEEEEEESSSC-CCTTCCCCGGGTSTTEEEEESCHH
T ss_pred HhhhhhhcCEEEEeccccccCchhccCCCCCcCCCeeechh-hCCEEEEEECCCC-CCcCCCcCcceecCCceEEeccHH
Confidence 45677899999999965321 1223432 112 2345554544321 11 122 34556899999
Q ss_pred HHHHHHHHhh
Q psy14416 613 LTVQQLKQML 622 (1065)
Q Consensus 613 ~~L~~L~~~l 622 (1065)
..+++|...+
T Consensus 170 ~~~~~l~~~l 179 (180)
T 1pno_A 170 KMTEQIVQAM 179 (180)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987765
No 104
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=89.16 E-value=1.4 Score=49.27 Aligned_cols=118 Identities=9% Similarity=-0.042 Sum_probs=80.7
Q ss_pred ceEEEc-cCCchHHHHHHHHHHHhCCCeEEEEecccccccccccccc-ccc--------cCcceEeecCCCccCCCCCCC
Q psy14416 305 IHYIGM-RNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMAN-AQI--------NCWPMLVIGGSCAQDHEGIGG 374 (1065)
Q Consensus 305 i~~i~~-~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~e-A~~--------~~vPLlvItg~~p~~~~g~ga 374 (1065)
-|++.+ ..|+++.-+|.|+|.. |.-.++-.|.++.+.-++..+.+ +.. .+.|++++..... . .+-+.
T Consensus 52 ~r~~~~gisE~~~~~~a~G~A~~-G~rp~~~~t~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g-~-~~G~t 128 (338)
T 1qs0_B 52 SRVFDAPISESGIVGTAVGMGAY-GLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG-G-IYGGQ 128 (338)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHH-TCEEEEECSCGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC-S-SSCCS
T ss_pred CcEEEccccHHHHHHHHHHHHhC-CCEEEEEeccHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC-C-CCCcc
Confidence 388876 7999999999999987 54333334788887666666542 322 2589998863222 1 22245
Q ss_pred CCccChhhhhcccccEE-eeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChhhhhh
Q psy14416 375 FQECPQVELARPYCKYS-ARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQ 430 (1065)
Q Consensus 375 ~Q~idQ~~l~~~~~k~s-~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~Dv~~~ 430 (1065)
+|...+..+++.+-.+. ....++.++...+..|++. .+||+|..|..+...
T Consensus 129 h~s~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~A~~~-----~~Pv~i~~p~~l~r~ 180 (338)
T 1qs0_B 129 THSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIEC-----DDPVIFLEPKRLYNG 180 (338)
T ss_dssp SSSCCCHHHHTTSTTCEEECCCSHHHHHHHHHHHHHS-----SSCEEEEEEGGGSSS
T ss_pred cccccHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhc-----CCcEEEEEchHhhcC
Confidence 56666678888887764 4567888888888888762 589999888666543
No 105
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=89.14 E-value=0.76 Score=46.55 Aligned_cols=134 Identities=18% Similarity=0.257 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhc---CCCEE--ecCCCCCCCCCCCccccc------------H
Q psy14416 488 ELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSF---NLPFL--PTPMGKGVVPDAHPNCVS------------A 550 (1065)
Q Consensus 488 ~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~l---g~PV~--tt~~gkg~v~~~hpl~lg------------~ 550 (1065)
..++++++|..|++.+|+-|.|..-+++...+++|+++| |.-|- --|.+ |..|-+-.-++. .
T Consensus 34 ~~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVA-GRMPGhMNVLLAEA~VPYd~v~EMd 112 (207)
T 1djl_A 34 NLDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLTEQGKKVRFGIHPVA-GRMPGQLNVLLAEAGVPYDIVLEMD 112 (207)
T ss_dssp CHHHHHHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTC-SSSTTHHHHHHHHTTCCGGGEEEHH
T ss_pred CHHHHHHHHHhCCeEEEECCchHHHHHHhHHHHHHHHHHHHCCCeEEEEeCccC-CCCCCCCcEEEEEeCCCHHHHhhHH
Confidence 346788999999999999998877666666666666655 55442 22222 233321111111 1
Q ss_pred HHHhhhcCCCEEEEeCCccc---------cccccCCC--ccccCCCeEEEecCChh----hcc--ccc-ccceEEEcCHH
Q psy14416 551 ARTHALQNADLVLLLGARLN---------WILHFGRA--PRFKSNVKIIQVDLNAE----ELH--NSV-QAAVAIQSDVR 612 (1065)
Q Consensus 551 ~~~~al~~aDlVI~iG~~~~---------~~~~~g~~--~~~~~~~~iI~Vd~d~~----~~~--~~~-~~~~~I~~D~~ 612 (1065)
..+..+.+.|++|++|+.-. ....+|.+ .-| +.+++|.+..+-. -++ -++ .-+.-+.+|++
T Consensus 113 eIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~-kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDAK 191 (207)
T 1djl_A 113 EINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVW-KSKQVIVMKRSLGVGYAAVDNPIFYKPNTAMLLGDAK 191 (207)
T ss_dssp HHGGGGGGCSEEEEESCCGGGCTHHHHCTTSTTTTCCCCCGG-GSSEEEEEESSSCCCTTCCCCGGGGSTTEEEEESCHH
T ss_pred HHhhhhhhcCEEEEeccccccCCccccCCCCCccCCeeecce-ecCEEEEEECCCCCCcCCCcCcceecCCceEEeccHH
Confidence 34567789999999997632 11234442 122 2345555544321 111 122 34556899999
Q ss_pred HHHHHHHHhhc
Q psy14416 613 LTVQQLKQMLS 623 (1065)
Q Consensus 613 ~~L~~L~~~l~ 623 (1065)
..+++|...++
T Consensus 192 ~~~~~l~~~l~ 202 (207)
T 1djl_A 192 KTCDALQAKVR 202 (207)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988876
No 106
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=88.89 E-value=0.41 Score=52.58 Aligned_cols=69 Identities=16% Similarity=0.175 Sum_probs=48.5
Q ss_pred hhcCCCEEEEeCCccccccccCCCccccCCCeEEEecCChhh-cc-cccccceEEEcCHHHHHHHHHHhhc
Q psy14416 555 ALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEE-LH-NSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 555 al~~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~-~~-~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
.+.+||++|.+|+++.-....++......+.+++.||.++.. +. .....++.+.+|+.++|..|.+.+.
T Consensus 208 ~~~~~DlllviGTSl~V~Pa~~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~i~~~~~~~l~~l~~~l~ 278 (289)
T 1q1a_A 208 KHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELG 278 (289)
T ss_dssp --CCCCEEEEESCCCCEETTTHHHHHSCTTSEEEEESSSCCTHHHHSCCTTCEEECCCHHHHHHHHHHHHT
T ss_pred HhccCCEEEEEccCCChhhHHHHHHHHhcCCCEEEEECCCcccCCCCCcceeEEEeCCHHHHHHHHHHHcC
Confidence 467999999999998654333333333346788889998763 21 1234689999999999999988775
No 107
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=88.35 E-value=0.84 Score=45.29 Aligned_cols=133 Identities=18% Similarity=0.257 Sum_probs=78.1
Q ss_pred HHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhc---CCCEE--ecCCCCCCCCCCCccccc------------HH
Q psy14416 489 LKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSF---NLPFL--PTPMGKGVVPDAHPNCVS------------AA 551 (1065)
Q Consensus 489 v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~l---g~PV~--tt~~gkg~v~~~hpl~lg------------~~ 551 (1065)
.++++++|..|++.+|+-|.|..-+++...+++|++.| |.-|- --|.+ |..|.+-.-++. ..
T Consensus 12 ~~~~a~~l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVA-GRMPGhMNVLLAEA~VPYd~v~EMde 90 (184)
T 1d4o_A 12 LDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFGIHPVA-GRMPGQLNVLLAEAGVPYDIVLEMDE 90 (184)
T ss_dssp HHHHHHHHHHCSEEEEEECHHHHHTTTHHHHHHHHHHHHHTTCEEEEEECTTC-SSSTTHHHHHHHHHTCCGGGEEEHHH
T ss_pred HHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEecccc-ccCCCcceEEEEEecCCHHHHHhHHH
Confidence 56788899999999999998876666666666666655 55442 22222 233321111111 13
Q ss_pred HHhhhcCCCEEEEeCCccc---------cccccCCC--ccccCCCeEEEecCChh----hcc--ccc-ccceEEEcCHHH
Q psy14416 552 RTHALQNADLVLLLGARLN---------WILHFGRA--PRFKSNVKIIQVDLNAE----ELH--NSV-QAAVAIQSDVRL 613 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~---------~~~~~g~~--~~~~~~~~iI~Vd~d~~----~~~--~~~-~~~~~I~~D~~~ 613 (1065)
.+..+.+.|++|++|+.-. .....|.+ .-| +.+++|.+..+-. .++ -++ .-+.-+.+|++.
T Consensus 91 IN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvl~v~-kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDAK~ 169 (184)
T 1d4o_A 91 INHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVW-KSKQVIVMKRSLGVGYAAVDNPIFYKPNTAMLLGDAKK 169 (184)
T ss_dssp HGGGGGGCSEEEEESCSGGGCTHHHHCTTSTTTTCCCCCGG-GSSCEEEEESSSCCCTTCCCCGGGGSTTEEEEESCHHH
T ss_pred HhhhhhhcCEEEEecCCccCCCccccCCCCCccCCeeeehh-hCCEEEEEECCCCCCcCCCcCcceecCCceEEeccHHH
Confidence 4567789999999997632 11234432 122 2334554543321 111 122 345568999999
Q ss_pred HHHHHHHhhc
Q psy14416 614 TVQQLKQMLS 623 (1065)
Q Consensus 614 ~L~~L~~~l~ 623 (1065)
.+++|...++
T Consensus 170 ~~~~l~~~l~ 179 (184)
T 1d4o_A 170 TCDALQAKVR 179 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988876
No 108
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Probab=87.98 E-value=0.53 Score=52.07 Aligned_cols=112 Identities=15% Similarity=0.136 Sum_probs=76.8
Q ss_pred cEEEEccCCCchhHHHHHHHHHhhcCCCEEecCC--CCCCCCCCCcccccHHHHhhhcCCCEEEEeCCccccccccCCCc
Q psy14416 502 PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPM--GKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWILHFGRAP 579 (1065)
Q Consensus 502 PvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~--gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~~~~~g~~~ 579 (1065)
.++-.|+|....+..+.+.+||+++|.-|-++-- -.|.+|. .+.+|..... =.|+|-|.+|-+=.-..+.|.
T Consensus 194 ivVsgGRG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~--~~QVGqTGk~--V~P~lYiA~GISGAiQHlaGm-- 267 (307)
T 1efp_A 194 RVVSGGRGLGSKESFAIIEELADKLGAAVGASRAAVDSGYAPN--DWQVGQTGKV--VAPELYVAVGISGAIQHLAGM-- 267 (307)
T ss_dssp EEEEECGGGCSSSTTHHHHHHHHHHTCEEEECHHHHHTTSSCG--GGBBSSSSBC--CCCSEEEEESCCCCHHHHTTT--
T ss_pred EEEEcCCcCCCHHHHHHHHHHHHHhCCceeecHHHHhCCCCCh--hhEeccCCcc--cCCceEEEEeccCcHHHHhhh--
Confidence 3444555655445568999999999998877642 2355554 3456644432 279999999976544444454
Q ss_pred cccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhh
Q psy14416 580 RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQML 622 (1065)
Q Consensus 580 ~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l 622 (1065)
.....+|-||.|+.. --+...|..|++|..+++.+|.+++
T Consensus 268 --~~s~~IVAIN~D~~A-pIF~~ADygiVgDl~~v~P~L~~~l 307 (307)
T 1efp_A 268 --KDSKVIVAINKDEEA-PIFQIADYGLVGDLFSVVPELTGKL 307 (307)
T ss_dssp --TTCSEEEEEESCTTC-GGGGTCSEEEESCHHHHHHHHHHTC
T ss_pred --ccCCEEEEEeCCCCC-CcccccCeEEeeeHHHHHHHHHhhC
Confidence 234578889999863 2245689999999999999998753
No 109
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=87.71 E-value=0.64 Score=52.55 Aligned_cols=69 Identities=16% Similarity=0.175 Sum_probs=48.0
Q ss_pred hhcCCCEEEEeCCccccccccCCCccccCCCeEEEecCChhh-cc-cccccceEEEcCHHHHHHHHHHhhc
Q psy14416 555 ALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEE-LH-NSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 555 al~~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~-~~-~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
.+.+||++|.+|+++.-....++......+.+++.|+.++.. +. .....++.|.+|+.++|..|.+.+.
T Consensus 216 ~~~~aDllLviGTSl~V~Paa~l~~~~~~g~~~v~IN~~~t~~~~~~~~~~d~~i~g~~~evl~~L~~~Lg 286 (361)
T 1q14_A 216 KHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELG 286 (361)
T ss_dssp ---CCCEEEEESCCCCSTTGGGHHHHSCTTSEEEEESSSCCHHHHHTCCTTCEEECSCHHHHHHHHHHHHT
T ss_pred hhccCCEEEEECCCCCchhHHHHHHHHhcCCeEEEEeCCCccccccCcccccEEEeCCHHHHHHHHHHHcC
Confidence 457999999999998654444443333346788889998763 11 1234689999999999999988765
No 110
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=87.68 E-value=0.54 Score=52.33 Aligned_cols=114 Identities=17% Similarity=0.171 Sum_probs=78.0
Q ss_pred cEEEEccCCCchhHHHHHHHHHhhcCCCEEecCC--CCCCCCCCCcccccHHHHhhhcCCCEEEEeCCccccccccCCCc
Q psy14416 502 PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPM--GKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWILHFGRAP 579 (1065)
Q Consensus 502 PvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~--gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~~~~~g~~~ 579 (1065)
.++-.|+|....+..+.+.+||+++|.-|-++-- -.|.+|. .+.+|.... .+..|+|-|.+|-+=.-..+.|.
T Consensus 204 ivVsgGRG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~--~~QVGqTGk-~V~P~~lYiA~GISGAiQHlaGm-- 278 (320)
T 1o97_D 204 FIMSIGRGIGEETNVEQFRELADEAGATLCCSRPIADAGWLPK--SRQVGQSGK-VVGSCKLYVAMGISGSIQHMAGM-- 278 (320)
T ss_dssp EEEEECGGGCSGGGHHHHHHHHHHHTCEEEECHHHHHTTSSCG--GGBBSTTSB-CCTTCSEEEEESCCCCHHHHHHH--
T ss_pred EEEEcCCccCChHHHHHHHHHHHHhCCceeecHHHHhCCCCCh--hhEeecCce-EecccceEEEEeccCcHHHHhhc--
Confidence 3444555666556678999999999998877642 2355554 445665443 33344999999976444344443
Q ss_pred cccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 580 RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 580 ~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
.....+|-||.|+.. --+...|..|++|..+++.+|.++++
T Consensus 279 --~~s~~IVAIN~D~~A-pIF~~ADygiVgDl~~vvP~L~~~l~ 319 (320)
T 1o97_D 279 --KHVPTIIAVNTDPGA-SIFTIAKYGIVADIFDIEEELKAQLA 319 (320)
T ss_dssp --TTCSEEEEECSCTTC-GGGGTCSEEECSCHHHHHHHHHHHC-
T ss_pred --ccCCEEEEEeCCCCC-CcccccCeEEeeeHHHHHHHHHHHHh
Confidence 234578889999863 22456899999999999999998874
No 111
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=87.12 E-value=1 Score=50.06 Aligned_cols=116 Identities=8% Similarity=-0.108 Sum_probs=76.9
Q ss_pred ceEEEc-cCCchHHHHHHHHHHHhCCCeEEEEecccccccccccccc-ccc--------cCcceEeecCCCccCCCCCCC
Q psy14416 305 IHYIGM-RNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMAN-AQI--------NCWPMLVIGGSCAQDHEGIGG 374 (1065)
Q Consensus 305 i~~i~~-~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~e-A~~--------~~vPLlvItg~~p~~~~g~ga 374 (1065)
-|++.+ ..|+++.-+|.|+|.. |...++-.|.++.+.-++..+.+ +-. .++|++++.. +.....+ +.
T Consensus 50 ~r~~~~gIaE~~~v~~a~G~A~~-G~rp~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~-g~ 126 (324)
T 1w85_B 50 DRVFDTPLAESGIGGLAIGLALQ-GFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSP-FGGGVHT-PE 126 (324)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHT-TCEEEEBCSSGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEE-ECSSSCC-CT
T ss_pred CcEEEcchhHHHHHHHHHHHHhC-CCEEEEEecchhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEe-ccCCCCC-CC
Confidence 477764 4999999999999986 54333334788887666666643 222 7899998843 2222112 22
Q ss_pred CCccChhhhhcccccEE-eeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChhhh
Q psy14416 375 FQECPQVELARPYCKYS-ARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLL 428 (1065)
Q Consensus 375 ~Q~idQ~~l~~~~~k~s-~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~Dv~ 428 (1065)
.+...+..+++.+..+. ....++.++...+.+|++ .++||+|.-|..+.
T Consensus 127 ~hs~~~~a~~~~iP~l~V~~Psd~~e~~~~l~~a~~-----~~~Pv~i~~p~~l~ 176 (324)
T 1w85_B 127 LHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIR-----DNDPVIFLEHLKLY 176 (324)
T ss_dssp TSSCCCHHHHTTSTTCEEECCSSHHHHHHHHHHHHH-----SSSCEEEEEETTTS
T ss_pred cccccHHHHHccCCCCEEEeeCCHHHHHHHHHHHHH-----cCCCEEEEechHhc
Confidence 22223448899888754 456788888888888885 35899998886654
No 112
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=87.01 E-value=0.85 Score=51.23 Aligned_cols=114 Identities=11% Similarity=0.029 Sum_probs=78.6
Q ss_pred ceEEEc-cCCchHHHHHHHHHHHhCCCeEEEEecccccccccccccccc---------ccCcceEeecCCCccCCCCCC-
Q psy14416 305 IHYIGM-RNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQ---------INCWPMLVIGGSCAQDHEGIG- 373 (1065)
Q Consensus 305 i~~i~~-~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~eA~---------~~~vPLlvItg~~p~~~~g~g- 373 (1065)
-|++.+ ..|+++.-+|.|+|.. |...++-.+.++.+.-++..+..+- ..+.||+++... ...- +.|
T Consensus 62 ~r~~d~gIaE~~~v~~a~G~A~~-G~rp~~~~~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~~g-~~G~ 138 (341)
T 2ozl_B 62 KRIIDTPISEMGFAGIAVGAAMA-GLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GASA-GVAA 138 (341)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHT-TCEEEEECSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SCCS-SCCG
T ss_pred CcEEECchhHHHHHHHHHHHHHC-CCEEEEEeccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cCCC-CCCc
Confidence 478877 6999999999999976 5433333467887766666665433 278999987653 2211 122
Q ss_pred CC-CccChhhhhcccccEEe-eCCChhhHHHHHHHHHHHhhcCCCCEEEEecChhhh
Q psy14416 374 GF-QECPQVELARPYCKYSA-RPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLL 428 (1065)
Q Consensus 374 a~-Q~idQ~~l~~~~~k~s~-~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~Dv~ 428 (1065)
.+ |.+| .+++.+..+.. ...++.++...++.|++. ++||+|..|..+.
T Consensus 139 tHs~~~e--a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~-----~~Pv~i~~~~~~~ 188 (341)
T 2ozl_B 139 QHSQCFA--AWYGHCPGLKVVSPWNSEDAKGLIKSAIRD-----NNPVVVLENELMY 188 (341)
T ss_dssp GGCCCCH--HHHHTSTTCEEECCCSHHHHHHHHHHHHHS-----SSCEEEEECHHHH
T ss_pred chhhHHH--HHhccCCCCEEEEeCCHHHHHHHHHHHHhc-----CCCEEEEEChhhh
Confidence 23 5554 78888877754 567888888888888762 5899999997653
No 113
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=86.66 E-value=0.55 Score=49.89 Aligned_cols=70 Identities=17% Similarity=0.168 Sum_probs=49.2
Q ss_pred HHhhhcCCCEEEEeCCccccccccCCCcccc-CCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 552 RTHALQNADLVLLLGARLNWILHFGRAPRFK-SNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~~~~~~g~~~~~~-~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
..+.+++||++|.+|+++.-....++..... .+.+++.|+.++...+. ..++.|.+++.++|.+|.+.+.
T Consensus 161 a~~~~~~adl~lviGTSl~V~Pa~~l~~~a~~~g~~~i~iN~~~t~~~~--~~~~~i~~~~~~~l~~l~~~l~ 231 (235)
T 1s5p_A 161 IYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGN--EFAEKYYGPASQVVPEFVEKLL 231 (235)
T ss_dssp HHHHHHHCSEEEEESCCTTEETGGGHHHHHHHTTCEEEEEESSSCC-----CCSEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCEEEEECcCCchhhHHHHHHHHHHcCCeEEEEECCCCCCCc--cccEEEeCCHHHHHHHHHHHHH
Confidence 3456778999999999986533333322211 35788999999876654 4688999999999999987653
No 114
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=86.38 E-value=0.89 Score=51.07 Aligned_cols=118 Identities=7% Similarity=-0.070 Sum_probs=80.2
Q ss_pred ceEEEc-cCCchHHHHHHHHHHHhCCCeEEEEeccccccccccccc-ccccc--------Cc-ceEeecCCCccCCCCCC
Q psy14416 305 IHYIGM-RNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMA-NAQIN--------CW-PMLVIGGSCAQDHEGIG 373 (1065)
Q Consensus 305 i~~i~~-~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~-eA~~~--------~v-PLlvItg~~p~~~~g~g 373 (1065)
-|++.+ ..|+++.-+|.|+|.. |...++-.|.++.+.-++..+. .+... +. ||+++.. +.... +-+
T Consensus 67 ~r~~~~gIaE~~~v~~a~G~A~~-G~rp~~~~tf~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~-~~g~~-~G~ 143 (342)
T 2bfd_B 67 DRVFNTPLCEQGIVGFGIGIAVT-GATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSP-WGCVG-HGA 143 (342)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHT-TCCEEEECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEE-ESCCS-SCG
T ss_pred CeEEEcCcCHHHHHHHHHHHHHC-CCeeEEEecchhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEe-cCCCC-CCc
Confidence 478876 4999999999999987 5434443578888776666654 23222 23 9998843 32221 224
Q ss_pred CCCccChhhhhcccccE-EeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChhhhhh
Q psy14416 374 GFQECPQVELARPYCKY-SARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQ 430 (1065)
Q Consensus 374 a~Q~idQ~~l~~~~~k~-s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~Dv~~~ 430 (1065)
.+|...+..+++.+..+ .....++.++...+..|++ . ++||+|-.|..+...
T Consensus 144 th~~~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~-~~Pv~i~~p~~l~r~ 196 (342)
T 2bfd_B 144 LYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIE----D-KNPCIFFEPKILYRA 196 (342)
T ss_dssp GGSSCCCHHHHHTSTTCEEECCSSHHHHHHHHHHHHH----S-SSCEEEEEEGGGTTS
T ss_pred chhhHhHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHh----c-CCcEEEEecchhcCC
Confidence 56666667888888775 4456788888888888876 2 589999888666443
No 115
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=85.88 E-value=1.3 Score=49.31 Aligned_cols=117 Identities=12% Similarity=-0.024 Sum_probs=76.6
Q ss_pred ceEEEc-cCCchHHHHHHHHHHHhCCCeEEEEecccccccccccccc--cc---c----cCcceEeecCCCccCCCCCCC
Q psy14416 305 IHYIGM-RNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMAN--AQ---I----NCWPMLVIGGSCAQDHEGIGG 374 (1065)
Q Consensus 305 i~~i~~-~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~e--A~---~----~~vPLlvItg~~p~~~~g~ga 374 (1065)
-|++.+ ..|+++.-+|.|+|.. |...++-.|.++.+.-++..+.+ |. . .++|++++.. +.....+-..
T Consensus 51 ~r~~~~gIaE~~~v~~a~G~A~~-G~~p~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~g~~ 128 (324)
T 1umd_B 51 DRVMDTPLSEAAIVGAALGMAAH-GLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMP-SGGGVRGGHH 128 (324)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHH-TCEEEEECSSGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEE-ECSSSSCGGG
T ss_pred CcEEECchhHHHHHHHHHHHHHC-CCEEEEEeccHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEc-CCCCCCCCCc
Confidence 366655 9999999999999986 54333334688877655555543 22 1 6899998763 2221111111
Q ss_pred CCccChhhhhcccccE-EeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChhhhh
Q psy14416 375 FQECPQVELARPYCKY-SARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLA 429 (1065)
Q Consensus 375 ~Q~idQ~~l~~~~~k~-s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~Dv~~ 429 (1065)
+|. .+..+++.+..+ .....++.++...+.+|++ .++||+|--|..+..
T Consensus 129 hs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~p~~l~~ 178 (324)
T 1umd_B 129 HSQ-SPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIR-----DEDPVVFLEPKRLYR 178 (324)
T ss_dssp SSC-CCHHHHHTSTTCEEEECCSHHHHHHHHHHHHH-----CSSCEEEEEEGGGSS
T ss_pred cch-hHHHHHhcCCCCEEEEeCCHHHHHHHHHHHHh-----cCCCEEEEechHhcC
Confidence 222 234888888775 4567788888888888885 358999988876643
No 116
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=85.82 E-value=0.94 Score=44.93 Aligned_cols=134 Identities=13% Similarity=0.181 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhc---CCCEE--ecCCCCCCCCCCCcccccH----------
Q psy14416 486 IAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSF---NLPFL--PTPMGKGVVPDAHPNCVSA---------- 550 (1065)
Q Consensus 486 ~~~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~l---g~PV~--tt~~gkg~v~~~hpl~lg~---------- 550 (1065)
+...++++++|..|++.+|+-|.|..-+++...+++|++.| |.-|- --|.+ |..|..-.-++..
T Consensus 17 ~~~~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVA-GRMPGhMNVLLAEA~VPYd~v~E 95 (186)
T 2bru_C 17 EITAEETAELLKNSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVA-GRLPGHMNVLLAEAKVPYDIVLE 95 (186)
T ss_dssp ---CHHHHHHHHHCSEEEEECSBHHHHTTTHHHHHHHHHHHHHHCCEEEEEECSSS-SSSSSTHHHHHHHHTCCTTTEEE
T ss_pred ecCHHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEecccc-ccCCCcceEEEEecCCCHHHHhh
Confidence 34567889999999999999998876666666666666655 55442 22222 2333221111111
Q ss_pred --HHHhhhcCCCEEEEeCCccc---------cccccCCCc-cccCCCeEEEecCChhhccc-------cc-ccceEEEcC
Q psy14416 551 --ARTHALQNADLVLLLGARLN---------WILHFGRAP-RFKSNVKIIQVDLNAEELHN-------SV-QAAVAIQSD 610 (1065)
Q Consensus 551 --~~~~al~~aDlVI~iG~~~~---------~~~~~g~~~-~~~~~~~iI~Vd~d~~~~~~-------~~-~~~~~I~~D 610 (1065)
..+..+.+.|++|++|+.-. .....|.+- ...+.+.+|.+..+- ..|. ++ .-+.-+.+|
T Consensus 96 MdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~KRsm-~~GyAgv~NpLF~~~nt~MlfGD 174 (186)
T 2bru_C 96 MDEINDDFADTDTVLVIGANDTVNPAAQDDPKSPIAGMPVLEVWKAQNVIVFKRSM-NTGYAGVQNPLFFKENTHMLFGD 174 (186)
T ss_dssp SCCCHHHHHHCSEEEECBCGGGGCGGGTTSTTSSSTTCCCCCCTTSSEEEEECSSS-CCSSCCCSCTTTBSSSEEEECSC
T ss_pred HHHHhcccccCCEEEEeccccccCccccCCCCCCcCCCeeeccccCCEEEEEECCC-CCCcCCCcCcceecCCceEEecc
Confidence 23456778999999996532 112334321 111234555454432 1121 22 335568999
Q ss_pred HHHHHHHHHHh
Q psy14416 611 VRLTVQQLKQM 621 (1065)
Q Consensus 611 ~~~~L~~L~~~ 621 (1065)
++..+++|...
T Consensus 175 AK~~~~~l~~~ 185 (186)
T 2bru_C 175 AKASVDAILKA 185 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 117
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=84.35 E-value=1.1 Score=50.12 Aligned_cols=70 Identities=21% Similarity=0.230 Sum_probs=51.6
Q ss_pred HHhhhcCCCEEEEeCCccccccccCCCcc-ccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 552 RTHALQNADLVLLLGARLNWILHFGRAPR-FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~~~~~~g~~~~-~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
..+++.+||++|++|+++.-....++... .....+++.||.++...+. ..++.|.+++.++|..|.+.|.
T Consensus 200 A~~~~~~aDllLViGTSL~V~Paa~Lp~~a~~~G~~vviIN~~pT~~d~--~adl~i~g~a~evl~~L~~~Lg 270 (355)
T 3pki_A 200 ADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDR--HADLRIHGYVDEVMTRLMEHLG 270 (355)
T ss_dssp HHHHHHHCSEEEEESCCCCSTTGGGTTHHHHHTTCEEEEECSSCCTTGG--GCSEEECSCHHHHHHHHHHHTT
T ss_pred HHHHHhcCCEEEEEeeCCCchhhhhhHHHHHhcCCEEEEECCCCCCCCC--ccCEEEeCCHHHHHHHHHHHhC
Confidence 34567899999999999865444444321 1235678889998866553 4688999999999999998875
No 118
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=83.66 E-value=6.6 Score=43.48 Aligned_cols=109 Identities=11% Similarity=-0.023 Sum_probs=70.7
Q ss_pred CeEEEe-cChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhHHHhh--cc-------cCCCcEEEEecCCCCCcCccCC
Q psy14416 47 IHYIGM-RNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMAN--AQ-------INCWPMLVIGGSCAQDHEGIGG 116 (1065)
Q Consensus 47 i~~v~~-rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~gla~--A~-------~~~~Pll~Isg~~~~~~~g~~~ 116 (1065)
-+++.+ ..|+++..+|.|++.. |...++-.+.++.+.-+...+.. |+ ..+.|++++.. ......+...
T Consensus 51 ~r~~~~gIaE~~~v~~a~G~A~~-G~~p~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~g~~ 128 (324)
T 1umd_B 51 DRVMDTPLSEAAIVGAALGMAAH-GLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMP-SGGGVRGGHH 128 (324)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHH-TCEEEEECSSGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEE-ECSSSSCGGG
T ss_pred CcEEECchhHHHHHHHHHHHHHC-CCEEEEEeccHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEc-CCCCCCCCCc
Confidence 366666 9999999999999886 76555545788887655556643 32 16899998763 2221122222
Q ss_pred Ccccchhhhcccccce-eccCCCcccHHHHHHHHHHHhhcCCCccccc
Q psy14416 117 FQECPQVELARPYCKY-SARPPNIHLIGQHVEKAVRLSTFGKPGRSLL 163 (1065)
Q Consensus 117 ~Q~~dq~~l~~~itk~-~~~v~~~~~i~~~l~~A~~~A~~~rpGP~~l 163 (1065)
||.. +..+++.+..+ .....++.+....+..|++ .++|+.+
T Consensus 129 hs~~-~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i 170 (324)
T 1umd_B 129 HSQS-PEAHFVHTAGLKVVAVSTPYDAKGLLKAAIR-----DEDPVVF 170 (324)
T ss_dssp SSCC-CHHHHHTSTTCEEEECCSHHHHHHHHHHHHH-----CSSCEEE
T ss_pred cchh-HHHHHhcCCCCEEEEeCCHHHHHHHHHHHHh-----cCCCEEE
Confidence 3333 34777777653 5556677778888887775 3478776
No 119
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=83.48 E-value=0.71 Score=49.41 Aligned_cols=69 Identities=17% Similarity=0.137 Sum_probs=49.3
Q ss_pred HhhhcCCCEEEEeCCccccccccCCCccc-cCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 553 THALQNADLVLLLGARLNWILHFGRAPRF-KSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 553 ~~al~~aDlVI~iG~~~~~~~~~g~~~~~-~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
.+.+++||++|.+|+++.-....++.... ..+.+++.||.++...+. ..++.|.+++.++|.+|.+.|.
T Consensus 175 ~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~--~~~~~i~~~~~~~l~~l~~~lg 244 (246)
T 1yc5_A 175 IGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDD--IATLKYNMDVVEFARRVMEEGG 244 (246)
T ss_dssp HHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEECSSCCTTGG--GCSEEECSCHHHHHHHHHHHHT
T ss_pred HHHHhcCCEEEEECCCCcchhHHHHHHHHHHcCCeEEEEeCCCCCCCc--ceeEEEeCCHHHHHHHHHHHcC
Confidence 45667899999999876543332221111 236788999999877654 3589999999999999987763
No 120
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=83.36 E-value=1.2 Score=49.44 Aligned_cols=70 Identities=21% Similarity=0.229 Sum_probs=51.1
Q ss_pred HHhhhcCCCEEEEeCCccccccccCCCcc-ccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 552 RTHALQNADLVLLLGARLNWILHFGRAPR-FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~~~~~~g~~~~-~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
..+.+.+||++|++|+++.-....++... .....+++.||.++...+. ..++.|.+++.++|..|.+.|.
T Consensus 200 a~~~~~~aDllLViGTSL~V~Paa~l~~~a~~~G~~vviIN~~~t~~d~--~adl~i~g~~~evl~~L~~~Lg 270 (318)
T 3k35_A 200 ADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDR--HADLRIHGYVDEVMTRLMKHLG 270 (318)
T ss_dssp HHHHHHTCSEEEEESCCCCSTTGGGHHHHHHHTTCEEEEECSSCCTTGG--GCSEEECSCHHHHHHHHHHHHT
T ss_pred HHHHHhcCCEEEEEccCCCchhhhhhHHHHHhcCCEEEEECCCCCCCCC--cccEEEeCCHHHHHHHHHHHhC
Confidence 34567899999999999864433333211 1235678889998866553 4688999999999999998875
No 121
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=82.54 E-value=0.86 Score=48.95 Aligned_cols=70 Identities=13% Similarity=0.094 Sum_probs=49.6
Q ss_pred HHhhhcCCCEEEEeCCccccccccCCCccc-cCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 552 RTHALQNADLVLLLGARLNWILHFGRAPRF-KSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~~~~~~g~~~~~-~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
..+.+++||++|.+|+++.-....++.... ..+.+++.||.++...+. ..++.|.+++.++|.+|.+.++
T Consensus 177 a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~iN~~~~~~d~--~~~~~i~~~~~~~l~~l~~~l~ 247 (253)
T 1ma3_A 177 AIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADP--IFDVKIIGKAGEVLPKIVEEVK 247 (253)
T ss_dssp HHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEEESSCCTTGG--GCSEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEEECCCceeccHHHHHHHHHHcCCeEEEEeCCCCCCCC--ceeEEEeCCHHHHHHHHHHHHH
Confidence 345667899999999986543332221111 235788999998876654 3589999999999999977664
No 122
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=81.38 E-value=1 Score=48.16 Aligned_cols=69 Identities=12% Similarity=0.156 Sum_probs=48.6
Q ss_pred HhhhcCCCEEEEeCCccccccccCCCccc-cCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 553 THALQNADLVLLLGARLNWILHFGRAPRF-KSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 553 ~~al~~aDlVI~iG~~~~~~~~~g~~~~~-~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
.+.+++||++|.+|+++.-....++.... ..+.+++.||.++...+. ..++.+.+++.++|.+|.+.+.
T Consensus 172 ~~~~~~adlllviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~--~~~~~i~~~~~~~l~~l~~~l~ 241 (249)
T 1m2k_A 172 MREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTP--IADYSLRGKAGEVMDELVRHVR 241 (249)
T ss_dssp HHHHHHCSEEEEESCCSCSTTGGGHHHHHHHTTCEEEEECSSCCTTGG--GCSEEECSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCEEEEEccCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCc--ceeEEEeCCHHHHHHHHHHHHH
Confidence 34567899999999876533222221111 246788999999877654 3588999999999999877654
No 123
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=80.37 E-value=1.2 Score=48.25 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=47.5
Q ss_pred HhhhcCCCEEEEeCCccccccccCCCcc-ccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHH
Q psy14416 553 THALQNADLVLLLGARLNWILHFGRAPR-FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLK 619 (1065)
Q Consensus 553 ~~al~~aDlVI~iG~~~~~~~~~g~~~~-~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~ 619 (1065)
.+.+.+||++|.+|+++.-....++... ...+.+++.||.++...+. ..++.|.+++.++|.+|.
T Consensus 207 ~~~~~~aDl~lviGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~d~--~~~~~i~g~~~~~l~~l~ 272 (273)
T 3riy_A 207 DRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATN--RFRFHFQGPCGTTLPEAL 272 (273)
T ss_dssp HHHHHHCSEEEEESCCSCEETGGGHHHHHHHTTCCEEEEESSCCTTGG--GSSEEEESCHHHHHHHHH
T ss_pred HHHHhcCCEEEEEeeCCcchhHHHhHHHHHHCCCEEEEECCCCCCCCc--ceeEEEeCCHHHHHHHHh
Confidence 3456789999999999864433333221 1246788999998877664 568999999999998874
No 124
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=79.68 E-value=10 Score=42.37 Aligned_cols=109 Identities=13% Similarity=0.081 Sum_probs=73.4
Q ss_pred CeEEEe-cChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhHHHhhcc---------cCCCcEEEEecCCCCCcCccC-
Q psy14416 47 IHYIGM-RNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQ---------INCWPMLVIGGSCAQDHEGIG- 115 (1065)
Q Consensus 47 i~~v~~-rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~gla~A~---------~~~~Pll~Isg~~~~~~~g~~- 115 (1065)
-+++.+ ..|++++.+|.|+|.. |...++-.+.+..+.-+...+..+. ..+.|++++... .... +.+
T Consensus 62 ~r~~d~gIaE~~~v~~a~G~A~~-G~rp~~~~~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~~g-~~G~ 138 (341)
T 2ozl_B 62 KRIIDTPISEMGFAGIAVGAAMA-GLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GASA-GVAA 138 (341)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHT-TCEEEEECSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SCCS-SCCG
T ss_pred CcEEECchhHHHHHHHHHHHHHC-CCEEEEEeccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cCCC-CCCc
Confidence 478888 5999999999999986 7656655578888766666666433 278999988653 2211 122
Q ss_pred CC-cccchhhhcccccce-eccCCCcccHHHHHHHHHHHhhcCCCccccccc
Q psy14416 116 GF-QECPQVELARPYCKY-SARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLN 165 (1065)
Q Consensus 116 ~~-Q~~dq~~l~~~itk~-~~~v~~~~~i~~~l~~A~~~A~~~rpGP~~l~~ 165 (1065)
.| |.+| .+++.+..+ .....++.++...++.|++. ++|+++..
T Consensus 139 tHs~~~e--a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~-----~~Pv~i~~ 183 (341)
T 2ozl_B 139 QHSQCFA--AWYGHCPGLKVVSPWNSEDAKGLIKSAIRD-----NNPVVVLE 183 (341)
T ss_dssp GGCCCCH--HHHHTSTTCEEECCCSHHHHHHHHHHHHHS-----SSCEEEEE
T ss_pred chhhHHH--HHhccCCCCEEEEeCCHHHHHHHHHHHHhc-----CCCEEEEE
Confidence 34 5554 677777654 44556777787777777662 48877643
No 125
>3c2q_A Uncharacterized conserved protein; putative LOR/SDH, structural genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis S2}
Probab=78.90 E-value=5.1 Score=43.81 Aligned_cols=96 Identities=18% Similarity=0.349 Sum_probs=67.6
Q ss_pred hcCCCEEecCC--CCCCCCCCCccccc--HHHHhhhcCCCEEEEeCCccccccccCCCccccCCCeEEEecCChhhc---
Q psy14416 525 SFNLPFLPTPM--GKGVVPDAHPNCVS--AARTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEEL--- 597 (1065)
Q Consensus 525 ~lg~PV~tt~~--gkg~v~~~hpl~lg--~~~~~al~~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~--- 597 (1065)
+.++|++-... -.|.+|+-+.-..- ..-++.++++|+||.+.+.+-+..+...++.+ .+.+-||.++...
T Consensus 236 k~~VPfVLAGSIRDDGPLPdvitdv~~AQ~~mr~~~~~a~~vimlaTmLHSIAtGNm~Ps~---v~~~cVDInp~~VtKL 312 (345)
T 3c2q_A 236 KNNIPYVLAGSIRDDGPIPDVITDSMVAQDKMRTTVMDKKMVIMLSTLLHSVATGNLMPSY---IKTVCVDIQPSTVTKL 312 (345)
T ss_dssp HTTCCEEEECCTTCSSCCTTCBCBHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHTTCCTT---SEEEEEESCHHHHHHH
T ss_pred hCCCCEEEEeeccCCCCCCcccccHHHHHHHHHHHhccCCchHHHHHHHHHHHhcccCccc---ceEEEEECCHHHhhhh
Confidence 56888775432 33445544332221 23456788999999999999988777776543 4688899998655
Q ss_pred -ccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 598 -HNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 598 -~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
|+...-.+.++.|+.+||..|.+.|.
T Consensus 313 ~DRGs~qa~giVTdvg~Fl~~L~~~L~ 339 (345)
T 3c2q_A 313 MDRGTSQAIGVVTDVGVFLVLLLKELE 339 (345)
T ss_dssp HHTCCSSEEEEESCHHHHHHHHHHHHH
T ss_pred hccCceeEEEEEecHHHHHHHHHHHHH
Confidence 34445578899999999999988775
No 126
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=78.70 E-value=8.9 Score=42.66 Aligned_cols=109 Identities=8% Similarity=-0.034 Sum_probs=73.7
Q ss_pred CeEEEe-cChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhHHHhh-ccc--------CCCcEEEEecCCCCCcCccCC
Q psy14416 47 IHYIGM-RNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMAN-AQI--------NCWPMLVIGGSCAQDHEGIGG 116 (1065)
Q Consensus 47 i~~v~~-rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~gla~-A~~--------~~~Pll~Isg~~~~~~~g~~~ 116 (1065)
-+++.+ ..|+++..+|.|+|.. |...++-.+.++++.-+...+.. +.. .+.|++++..... . ..-+.
T Consensus 52 ~r~~~~gisE~~~~~~a~G~A~~-G~rp~~~~t~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g-~-~~G~t 128 (338)
T 1qs0_B 52 SRVFDAPISESGIVGTAVGMGAY-GLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG-G-IYGGQ 128 (338)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHH-TCEEEEECSCGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC-S-SSCCS
T ss_pred CcEEEccccHHHHHHHHHHHHhC-CCEEEEEeccHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC-C-CCCcc
Confidence 378886 7999999999999987 75555545788887666666642 321 3589998862221 1 12245
Q ss_pred Ccccchhhhcccccce-eccCCCcccHHHHHHHHHHHhhcCCCccccc
Q psy14416 117 FQECPQVELARPYCKY-SARPPNIHLIGQHVEKAVRLSTFGKPGRSLL 163 (1065)
Q Consensus 117 ~Q~~dq~~l~~~itk~-~~~v~~~~~i~~~l~~A~~~A~~~rpGP~~l 163 (1065)
||...+..+++.+-.+ .....++.++...+..|++. ++|+++
T Consensus 129 h~s~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~A~~~-----~~Pv~i 171 (338)
T 1qs0_B 129 THSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIEC-----DDPVIF 171 (338)
T ss_dssp SSSCCCHHHHTTSTTCEEECCCSHHHHHHHHHHHHHS-----SSCEEE
T ss_pred cccccHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhc-----CCcEEE
Confidence 6666667788877554 45566777787777777762 488776
No 127
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=78.51 E-value=6.3 Score=43.67 Aligned_cols=109 Identities=7% Similarity=-0.093 Sum_probs=71.5
Q ss_pred CeEEEec-ChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhHHHhh-ccc--------CCCcEEEEecCCCCCcCccCC
Q psy14416 47 IHYIGMR-NEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMAN-AQI--------NCWPMLVIGGSCAQDHEGIGG 116 (1065)
Q Consensus 47 i~~v~~r-hE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~gla~-A~~--------~~~Pll~Isg~~~~~~~g~~~ 116 (1065)
-+++.+- .|+++..+|.|++.. |...++-.+.++.+.-+...+.. +.. .+.|++++.. ......+...
T Consensus 50 ~r~~~~gIaE~~~v~~a~G~A~~-G~rp~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~g~~ 127 (324)
T 1w85_B 50 DRVFDTPLAESGIGGLAIGLALQ-GFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSP-FGGGVHTPEL 127 (324)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHT-TCEEEEBCSSGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEE-ECSSSCCCTT
T ss_pred CcEEEcchhHHHHHHHHHHHHhC-CCEEEEEecchhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEe-ccCCCCCCCc
Confidence 4777766 999999999999986 75555545788887656666643 222 7899998853 2211122122
Q ss_pred Ccccchhhhcccccce-eccCCCcccHHHHHHHHHHHhhcCCCccccc
Q psy14416 117 FQECPQVELARPYCKY-SARPPNIHLIGQHVEKAVRLSTFGKPGRSLL 163 (1065)
Q Consensus 117 ~Q~~dq~~l~~~itk~-~~~v~~~~~i~~~l~~A~~~A~~~rpGP~~l 163 (1065)
||. .+.++++.+..+ .....++.+....+..|++ .++|+.+
T Consensus 128 hs~-~~~a~~~~iP~l~V~~Psd~~e~~~~l~~a~~-----~~~Pv~i 169 (324)
T 1w85_B 128 HSD-SLEGLVAQQPGLKVVIPSTPYDAKGLLISAIR-----DNDPVIF 169 (324)
T ss_dssp SSC-CCHHHHTTSTTCEEECCSSHHHHHHHHHHHHH-----SSSCEEE
T ss_pred ccc-cHHHHHccCCCCEEEeeCCHHHHHHHHHHHHH-----cCCCEEE
Confidence 333 334788887754 5556677778888887775 3478776
No 128
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=76.95 E-value=2.4 Score=48.11 Aligned_cols=116 Identities=13% Similarity=-0.058 Sum_probs=71.8
Q ss_pred ceEEEc-cCCchHHHHHHHHHHHhCCCeEEEEecccccccccccccc-cccc--------CcceEeecCCCccCCCCCCC
Q psy14416 305 IHYIGM-RNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMAN-AQIN--------CWPMLVIGGSCAQDHEGIGG 374 (1065)
Q Consensus 305 i~~i~~-~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~e-A~~~--------~vPLlvItg~~p~~~~g~ga 374 (1065)
-|++.+ ..|+++.-+|.|+|.. |...++-.|.++.+.-++..+.. +-.. +.||+++...... .+.+.
T Consensus 98 ~r~~d~gIaE~~~v~~a~G~A~~-G~rpv~~~tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~--~g~g~ 174 (369)
T 1ik6_A 98 ERVIDTPLNEGGILGFAMGMAMA-GLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSG--TRGGL 174 (369)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHT-TCEEEEECCCC----CCHHHHHHHHHHHHC------CCCCEEEEEECC--------
T ss_pred CcEEECcccHHHHHHHHHHHHHC-CCeeEEEecchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCC--CCCCc
Confidence 477754 4999999999999986 54333334788877666666654 3222 8999977643321 12222
Q ss_pred -CCccChhhhhcccccEEe-eCCChhhHHHHHHHHHHHhhcCCCCEEEEecChhhhh
Q psy14416 375 -FQECPQVELARPYCKYSA-RPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLA 429 (1065)
Q Consensus 375 -~Q~idQ~~l~~~~~k~s~-~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~Dv~~ 429 (1065)
+|..| ..+++.+..+.. ...++.++...++.|++ .++||+|-.|..+..
T Consensus 175 ~hs~~~-~a~l~~iPnl~V~~Psd~~e~~~ll~~A~~-----~~~Pv~i~~p~~l~r 225 (369)
T 1ik6_A 175 YHSNSP-EAIFVHTPGLVVVMPSTPYNAKGLLKAAIR-----GDDPVVFLEPKILYR 225 (369)
T ss_dssp -----H-HHHHHTCTTCEEECCCSHHHHHHHHHHHHH-----SSSCEEEEEEGGGSS
T ss_pred cccccH-HHHHcCCCCcEEEecCCHHHHHHHHHHHHh-----CCCCEEEEEehhhhc
Confidence 33334 588888877754 56788888888888876 358999998877643
No 129
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=72.76 E-value=8.9 Score=43.32 Aligned_cols=109 Identities=12% Similarity=-0.053 Sum_probs=63.6
Q ss_pred CeEEEec-ChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhHHHhh-cccC--------CCcEEEEecCCCCCcCccCC
Q psy14416 47 IHYIGMR-NEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMAN-AQIN--------CWPMLVIGGSCAQDHEGIGG 116 (1065)
Q Consensus 47 i~~v~~r-hE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~gla~-A~~~--------~~Pll~Isg~~~~~~~g~~~ 116 (1065)
-+++.+- .|++++.+|.|+|.. |...++-.|.++.+.-+...|.. +... +.|++++........ +-..
T Consensus 98 ~r~~d~gIaE~~~v~~a~G~A~~-G~rpv~~~tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~~g-~g~~ 175 (369)
T 1ik6_A 98 ERVIDTPLNEGGILGFAMGMAMA-GLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTR-GGLY 175 (369)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHT-TCEEEEECCCC----CCHHHHHHHHHHHHC------CCCCEEEEEECC--------
T ss_pred CcEEECcccHHHHHHHHHHHHHC-CCeeEEEecchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCCCC-CCcc
Confidence 4777766 999999999999986 75555555788876555555543 2222 899997763222111 2223
Q ss_pred Ccccchhhhcccccce-eccCCCcccHHHHHHHHHHHhhcCCCccccc
Q psy14416 117 FQECPQVELARPYCKY-SARPPNIHLIGQHVEKAVRLSTFGKPGRSLL 163 (1065)
Q Consensus 117 ~Q~~dq~~l~~~itk~-~~~v~~~~~i~~~l~~A~~~A~~~rpGP~~l 163 (1065)
+|..+ .++++.+-.+ .....++.++...++.|++ .++|+.+
T Consensus 176 hs~~~-~a~l~~iPnl~V~~Psd~~e~~~ll~~A~~-----~~~Pv~i 217 (369)
T 1ik6_A 176 HSNSP-EAIFVHTPGLVVVMPSTPYNAKGLLKAAIR-----GDDPVVF 217 (369)
T ss_dssp ----H-HHHHHTCTTCEEECCCSHHHHHHHHHHHHH-----SSSCEEE
T ss_pred ccccH-HHHHcCCCCcEEEecCCHHHHHHHHHHHHh-----CCCCEEE
Confidence 44444 4777777654 4455677777777777765 3478776
No 130
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=69.90 E-value=7.4 Score=43.46 Aligned_cols=109 Identities=6% Similarity=-0.072 Sum_probs=72.8
Q ss_pred CeEEEec-ChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhHHHh-hccc--------CCC-cEEEEecCCCCCcCccC
Q psy14416 47 IHYIGMR-NEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMA-NAQI--------NCW-PMLVIGGSCAQDHEGIG 115 (1065)
Q Consensus 47 i~~v~~r-hE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~gla-~A~~--------~~~-Pll~Isg~~~~~~~g~~ 115 (1065)
-+++.+- .|++++.+|.|++.. |...++-.|.++++.-+...+. ++.. -+. |++++..... .. .-.
T Consensus 67 ~r~~~~gIaE~~~v~~a~G~A~~-G~rp~~~~tf~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g-~~-~G~ 143 (342)
T 2bfd_B 67 DRVFNTPLCEQGIVGFGIGIAVT-GATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGC-VG-HGA 143 (342)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHT-TCCEEEECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESC-CS-SCG
T ss_pred CeEEEcCcCHHHHHHHHHHHHHC-CCeeEEEecchhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCC-CC-CCc
Confidence 4788886 999999999999986 6666655689998766666654 2321 133 9998854221 21 224
Q ss_pred CCcccchhhhcccccc-eeccCCCcccHHHHHHHHHHHhhcCCCccccc
Q psy14416 116 GFQECPQVELARPYCK-YSARPPNIHLIGQHVEKAVRLSTFGKPGRSLL 163 (1065)
Q Consensus 116 ~~Q~~dq~~l~~~itk-~~~~v~~~~~i~~~l~~A~~~A~~~rpGP~~l 163 (1065)
.||...+..+++.+-. ......++.+....+..|++ . ++|+.+
T Consensus 144 th~~~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~-~~Pv~i 187 (342)
T 2bfd_B 144 LYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIE----D-KNPCIF 187 (342)
T ss_dssp GGSSCCCHHHHHTSTTCEEECCSSHHHHHHHHHHHHH----S-SSCEEE
T ss_pred chhhHhHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHh----c-CCcEEE
Confidence 5666666677777754 35556677777777777765 2 488776
No 131
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=67.13 E-value=2.2 Score=46.76 Aligned_cols=69 Identities=13% Similarity=0.219 Sum_probs=46.2
Q ss_pred HhhhcCCCEEEEeCCccccccccCCCccc-cCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 553 THALQNADLVLLLGARLNWILHFGRAPRF-KSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 553 ~~al~~aDlVI~iG~~~~~~~~~g~~~~~-~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
.+.+.+||++|.+|+++.-....++.... ..+.+++.||.++...+.. ..++.|.+++.++++ |.+.++
T Consensus 211 ~~~~~~aDllLviGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~~~~-~~d~~i~g~a~~vl~-~~~~l~ 280 (290)
T 3u31_A 211 EEEIAKCDLLLVIGTSSTVSTATNLCHFACKKKKKIVEINISKTYITNK-MSDYHVCAKFSELTK-VANILK 280 (290)
T ss_dssp HHHHHHCSEEEEESCCSCSHHHHHHHHHHHHTTCCEEEEESSCCTTTTT-TCSEEEESCGGGHHH-HHHHHH
T ss_pred HHHHhcCCEEEEECcCCcchhHHHHHHHHHHcCCEEEEECCCCCCCCCc-cceEEEECCHHHHHH-HHHHHh
Confidence 34567899999999998643333322211 2456888899988766532 368899999999876 444443
No 132
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=57.44 E-value=41 Score=35.67 Aligned_cols=153 Identities=7% Similarity=0.017 Sum_probs=76.9
Q ss_pred cCccHHHHHHHHHHhcC--ceEEEeecCCch--------hhhHHHhhcCCceEEEcc--CCchHHHHHH-HHHHHhCCCe
Q psy14416 265 EELSANQVIAQALKFQG--IEYVFGIVGIPV--------IELAMACQQEGIHYIGMR--NEQAACYAAQ-AIGYLTKKPG 331 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~G--V~~vfg~pG~~~--------~~l~~al~~~~i~~i~~~--~E~~A~~~A~-g~ar~tgkpg 331 (1065)
.....+..+++.|.+.| -+++..+-|... ..+.+++++.+++++... +....++.+. .+-+...+|-
T Consensus 111 D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (297)
T 3rot_A 111 DNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGIKTILQDKGIFFEELDVGTDPNQVQSRVKSYFKIHPETN 190 (297)
T ss_dssp CHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHHHCTTCC
T ss_pred ChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhcCCeEEEeecCCChHHHHHHHHHHHHhCCCCC
Confidence 45567888999999999 777766655322 224455666687765433 2223333221 1122345678
Q ss_pred EEEEeccccccccccccccccc----cCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHH-HHHHH
Q psy14416 332 VCLVVSGPGLLHTFGGMANAQI----NCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIG-QHVEK 406 (1065)
Q Consensus 332 v~~~tsGpG~~N~~~av~eA~~----~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~-~~i~~ 406 (1065)
+++|.+...+.-++.++.++-. ..+.++-+-+... ....+.......+... ++..+. ..++.
T Consensus 191 ai~~~~d~~A~g~~~al~~~g~~vP~~dv~vig~D~~~~------------~~~~i~~~~~lttv~~-~~~~~g~~av~~ 257 (297)
T 3rot_A 191 IIFCLTSQALDPLGQMLLHPDRYDFNYQPQVYSFDKTPN------------TVSLIHKKLVNYVMDQ-QPFLMGYLSITQ 257 (297)
T ss_dssp EEEESSHHHHHHHHHHHHSHHHHTCCCCCEEEEECCCHH------------HHHHHHTTSCCEEECC-CHHHHHHHHHHH
T ss_pred EEEEcCCcchHHHHHHHHhcCCccCCCceEEEEeCCCHH------------HHHHHHcCCceEEEec-ChHHHHHHHHHH
Confidence 8899887776666666666655 2444333321110 0011222222223332 344433 34444
Q ss_pred HHHHhhcCCCCEEEEecChhhhhhc
Q psy14416 407 AVRLSTFGKPGVSYLDFPANLLAQR 431 (1065)
Q Consensus 407 A~~~A~~~~~GPV~L~iP~Dv~~~~ 431 (1065)
+++... +..-|-++.+|.++...+
T Consensus 258 l~~~i~-g~~~~~~i~~~~~~~~~~ 281 (297)
T 3rot_A 258 LVLMNR-YQLNPVNINTAMAENLYF 281 (297)
T ss_dssp HHHHHH-HCCCCCCEECCC------
T ss_pred HHHHHh-CCCCCcccccCceEEecc
Confidence 444443 344567888898876544
No 133
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=49.16 E-value=22 Score=44.24 Aligned_cols=79 Identities=15% Similarity=0.113 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHHHHhhhcCCCEEE
Q psy14416 486 IAELKQASRLILEAK--APLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVL 563 (1065)
Q Consensus 486 ~~~v~~~ae~L~~Ak--rPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~~~~al~~aDlVI 563 (1065)
+++++.+++.|++.+ +..++.|.... .+....+.+|++.+|.+.+........... .+.+ ....-+.++|+||
T Consensus 323 deAl~~ia~~L~~i~~~~i~~~~s~~~t-~E~~~~~~kl~~~lGt~n~d~~~~~~~~~~---~~~~-~~~~di~~ad~Il 397 (783)
T 3i9v_3 323 EEAFLALKEGLKEARGEEVGLYLAHDAT-LEEGLLASELAKALKTPHLDFQGRTAAPAS---LFPP-ASLEDLLQADFAL 397 (783)
T ss_dssp HHHHHHHHHHHHTCCTTSEEEEECTTCC-TTHHHHHHHHHHHTTCSCEEETTCCSSCGG---GSCB-CCHHHHHHCSCEE
T ss_pred HHHHHHHHHHHHhhccCCEEEEECCCCC-HHHHHHHHHHHHHhCCCcccCCchhhhhhc---cCCC-CCHHHHhhCCEEE
Confidence 678888889998764 44555554432 344567899999999887644321111100 1111 1223457999999
Q ss_pred EeCCccc
Q psy14416 564 LLGARLN 570 (1065)
Q Consensus 564 ~iG~~~~ 570 (1065)
.+| .+.
T Consensus 398 ~~G-Np~ 403 (783)
T 3i9v_3 398 VLG-DPT 403 (783)
T ss_dssp EES-CHH
T ss_pred EeC-Chh
Confidence 999 764
No 134
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=45.10 E-value=1.3e+02 Score=31.50 Aligned_cols=88 Identities=9% Similarity=0.095 Sum_probs=51.7
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCch-------hhhHHHhhcCCce----EEEccCCchHHHHHHHHHHH--hCCCe
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPV-------IELAMACQQEGIH----YIGMRNEQAACYAAQAIGYL--TKKPG 331 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~-------~~l~~al~~~~i~----~i~~~~E~~A~~~A~g~ar~--tgkpg 331 (1065)
.+..++...++.|.+.|-+++.-+-|... ..+.+++++.++. ++....+...++.+.- ..+ ..+|-
T Consensus 109 D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~ 187 (289)
T 3k9c_A 109 DDVAGITLAVDHLTELGHRNIAHIDGADAPGGADRRAGFLAAMDRHGLSASATVVTGGTTETEGAEGMH-TLLEMPTPPT 187 (289)
T ss_dssp CHHHHHHHHHHHHHHTTCCSEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGEEEECCCSSHHHHHHHHH-HHHTSSSCCS
T ss_pred ChHHHHHHHHHHHHHCCCCcEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCccEEECCCCHHHHHHHHH-HHHcCCCCCC
Confidence 45567888999999999998877766432 2234455555543 3333333333333221 122 35788
Q ss_pred EEEEeccccccccccccccccc
Q psy14416 332 VCLVVSGPGLLHTFGGMANAQI 353 (1065)
Q Consensus 332 v~~~tsGpG~~N~~~av~eA~~ 353 (1065)
+++|.+..-+.-++.++.++-.
T Consensus 188 ai~~~~d~~A~g~~~al~~~g~ 209 (289)
T 3k9c_A 188 AVVAFNDRCATGVLDLLVRSGR 209 (289)
T ss_dssp EEEESSHHHHHHHHHHHHHTTC
T ss_pred EEEECChHHHHHHHHHHHHcCC
Confidence 9999877666656666655543
No 135
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=43.78 E-value=1.1e+02 Score=31.36 Aligned_cols=89 Identities=12% Similarity=-0.047 Sum_probs=51.7
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCch--------hhhHHHhhcCCceEEEcc---CCchHHHHHHH-HHHHhC-CCe
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPV--------IELAMACQQEGIHYIGMR---NEQAACYAAQA-IGYLTK-KPG 331 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~--------~~l~~al~~~~i~~i~~~---~E~~A~~~A~g-~ar~tg-kpg 331 (1065)
.....+...++.|.+.|.+++.-+-|... ..+.+++++.+++..... .....++-+.- +-+... +|-
T Consensus 103 d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 182 (272)
T 3o74_A 103 DDRDASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEALQGYTGEVRRYQGEAFSRECGQRLMQQLIDDLGGLPD 182 (272)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHTTTCCSEEEEEEESSSSHHHHHHHHHHHHHHHTSCCS
T ss_pred chHHHHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHHHHcCCChheeecCCCCHHHHHHHHHHHHhcCCCCCc
Confidence 35567888999999999998877655322 223444566676543322 22222222211 112234 688
Q ss_pred EEEEeccccccccccccccccc
Q psy14416 332 VCLVVSGPGLLHTFGGMANAQI 353 (1065)
Q Consensus 332 v~~~tsGpG~~N~~~av~eA~~ 353 (1065)
+++|.+...+.-++.++.++-.
T Consensus 183 ai~~~~d~~a~g~~~al~~~g~ 204 (272)
T 3o74_A 183 ALVTTSYVLLQGVFDTLQARPV 204 (272)
T ss_dssp EEEESSHHHHHHHHHHHHTSCG
T ss_pred EEEEeCchHHHHHHHHHHHcCC
Confidence 9999877666666666666543
No 136
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=43.68 E-value=1.9e+02 Score=30.28 Aligned_cols=88 Identities=9% Similarity=-0.014 Sum_probs=51.4
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCch--------hhhHHHhhcCCce-----EEEccCCchHHHHHHHHHH-HhCCC
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPV--------IELAMACQQEGIH-----YIGMRNEQAACYAAQAIGY-LTKKP 330 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~--------~~l~~al~~~~i~-----~i~~~~E~~A~~~A~g~ar-~tgkp 330 (1065)
....++...++.|.+.|-+++.-+-|... ..+.+++++.++. .+........++-+.---. ...+|
T Consensus 109 D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 188 (294)
T 3qk7_A 109 DNHAGASLAVKRLLELGHQRIAFVSTDARISYVDQRLQGYVQTMSEAGLMPLAGYLQKADPTRPGGYLAASRLLALEVPP 188 (294)
T ss_dssp CHHHHHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHHHHHHHTTTCCCCTTCEEEECSSHHHHHHHHHHHHHSSSCC
T ss_pred ChHHHHHHHHHHHHHCCCceEEEEeCCcccchHHHHHHHHHHHHHHCCCCCChhHeecCCCCHHHHHHHHHHHHcCCCCC
Confidence 45567888999999999998766655322 2234456555543 3333333344433322111 23578
Q ss_pred eEEEEecccccccccccccccc
Q psy14416 331 GVCLVVSGPGLLHTFGGMANAQ 352 (1065)
Q Consensus 331 gv~~~tsGpG~~N~~~av~eA~ 352 (1065)
-+++|.+..-+.-++.++.++-
T Consensus 189 ~ai~~~nd~~A~g~~~al~~~G 210 (294)
T 3qk7_A 189 TAIITDCNMLGDGVASALDKAG 210 (294)
T ss_dssp SEEEESSHHHHHHHHHHHHHTT
T ss_pred cEEEECCHHHHHHHHHHHHHcC
Confidence 8999987766665665555543
No 137
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=41.85 E-value=1.9e+02 Score=29.83 Aligned_cols=130 Identities=13% Similarity=0.113 Sum_probs=69.5
Q ss_pred CeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeeccccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhc
Q psy14416 201 KRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQ 280 (1065)
Q Consensus 201 rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~ 280 (1065)
=.-+++.+... ...+..+.+.++|++.+ |+. ..+ ............++..+++.|.+.
T Consensus 64 vdgiIi~~~~~----~~~~~~l~~~~iPvV~i--~~~--~~~--------------~~~~~V~~D~~~~g~~a~~~L~~~ 121 (276)
T 3jy6_A 64 FDGLILQSFSN----PQTVQEILHQQMPVVSV--DRE--MDA--------------CPWPQVVTDNFEAAKAATTAFRQQ 121 (276)
T ss_dssp CSEEEEESSCC----HHHHHHHHTTSSCEEEE--SCC--CTT--------------CSSCEEECCHHHHHHHHHHHHHTT
T ss_pred CCEEEEecCCc----HHHHHHHHHCCCCEEEE--ecc--cCC--------------CCCCEEEEChHHHHHHHHHHHHHc
Confidence 34455554433 56677777888997654 432 100 001111234567888899999999
Q ss_pred CceEEEeecCCch-hh----hHH----HhhcCCceEEEcc---CCchHHHHHHHHHHHhCCCeEEEEecccccccccccc
Q psy14416 281 GIEYVFGIVGIPV-IE----LAM----ACQQEGIHYIGMR---NEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGM 348 (1065)
Q Consensus 281 GV~~vfg~pG~~~-~~----l~~----al~~~~i~~i~~~---~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av 348 (1065)
|.+++..+.|... .. ... ++++.+. ++... ....+...+.-+-+...+|-+++|.+..-+.-++.++
T Consensus 122 G~~~I~~i~~~~~~~~~~~~R~~gf~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al 200 (276)
T 3jy6_A 122 GYQHVVVLTSELELSRTRQERYRGILAAAQDVDV-LEVSESSYNHSEVHQRLTQLITQNDQKTVAFALKERWLLEFFPNL 200 (276)
T ss_dssp TCCEEEEEEECSTTCHHHHHHHHHHHTTCSEEEE-EEECSSSCCHHHHHHHHHHHHHSSSSCEEEEESSHHHHHHHSHHH
T ss_pred CCCeEEEEecCCCCCchHHHHHHHHHHHHHhCCc-EEEeccccCCcHHHHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHH
Confidence 9998877766432 11 122 2333333 33221 1112221122121234678899998877666666666
Q ss_pred ccccc
Q psy14416 349 ANAQI 353 (1065)
Q Consensus 349 ~eA~~ 353 (1065)
.++-.
T Consensus 201 ~~~g~ 205 (276)
T 3jy6_A 201 IISGL 205 (276)
T ss_dssp HHSSS
T ss_pred HHcCC
Confidence 66543
No 138
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=40.84 E-value=44 Score=33.04 Aligned_cols=117 Identities=11% Similarity=0.114 Sum_probs=62.2
Q ss_pred CcEEEEccCCCchh----HHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHHHHhhhcCCCEEEEe-----CCcccc
Q psy14416 501 APLVIIGKGAAYSQ----AETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLL-----GARLNW 571 (1065)
Q Consensus 501 rPvIlvG~g~~~~~----a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~~~~al~~aDlVI~i-----G~~~~~ 571 (1065)
|..+++|...-... ..+++++++++.|..|+. |.-.. .+ -+..+-......+++||+||.+ |...++
T Consensus 10 ~~~~y~a~~~F~~~e~~~~~~~l~~~l~~~G~~v~~-P~~~~-~~--~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~ 85 (161)
T 2f62_A 10 RKIYIAGPAVFNPDMGASYYNKVRELLKKENVMPLI-PTDNE-AT--EALDIRQKNIQMIKDCDAVIADLSPFRGHEPDC 85 (161)
T ss_dssp CEEEEESGGGGSTTTTHHHHHHHHHHHHTTTCEEEC-TTTTC-CS--SHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCH
T ss_pred hceEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEC-CCccC-cc--hHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCC
Confidence 56677776543322 246777778888887665 32111 00 0111112335678899999999 555554
Q ss_pred cccc--CCCccccCCCeEEEecCChhh------------------ccc--c--cccceEEEcCHHHHHHHHHHhhc
Q psy14416 572 ILHF--GRAPRFKSNVKIIQVDLNAEE------------------LHN--S--VQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 572 ~~~~--g~~~~~~~~~~iI~Vd~d~~~------------------~~~--~--~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
-..+ |+- ...++++|-+..|... ++. + ......+..|..+.|+.|.+.+.
T Consensus 86 GTafEiGyA--~AlgKPVi~l~~d~r~~~~~~~~~~d~~g~~vedf~~~~NLMl~~~~~~~~~~~~~l~~l~~~~~ 159 (161)
T 2f62_A 86 GTAFEVGCA--AALNKMVLTFTSDRRNMREKYGSGVDKDNLRVEGFGLPFNLMLYDGVEVFDSFESAFKYFLANFP 159 (161)
T ss_dssp HHHHHHHHH--HHTTCEEEEECSCCSCHHHHHTSSBCTTSCBCCCSSCSSCGGGCCSSCEESSHHHHHHHHHHHSC
T ss_pred cHHHHHHHH--HHCCCEEEEEEcCchhhhhhcccccccccccccccCCcchhhhhhhheeeCCHHHHHHHHHHhhc
Confidence 2211 221 2234566666655321 111 0 01122277888888888877654
No 139
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*
Probab=38.42 E-value=31 Score=42.33 Aligned_cols=113 Identities=14% Similarity=0.105 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhCC-----CcEEEEccCCCc-hhHHHHHHHHHh-hcCCCEEecCCCCCCCCC--CCcccccH----HH
Q psy14416 486 IAELKQASRLILEAK-----APLVIIGKGAAY-SQAETELLSFVN-SFNLPFLPTPMGKGVVPD--AHPNCVSA----AR 552 (1065)
Q Consensus 486 ~~~v~~~ae~L~~Ak-----rPvIlvG~g~~~-~~a~~~L~~LAe-~lg~PV~tt~~gkg~v~~--~hpl~lg~----~~ 552 (1065)
+++++.+++.|++.+ .-+.+.++.... .+....+.+|++ .+|.+-+.+...-+..+. .....+|. ..
T Consensus 81 deAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~e~~~~~~~~~~~~~Gs~n~~~~~~~c~~~~~~~~~~~~G~~~~~~~ 160 (715)
T 2iv2_X 81 DEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFARAVIGTNNVDCCARVXHGPSVAGLHQSVGNGAMSNA 160 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGEEEECCSSTTCHHHHHHHHHHHHHTTCCCCEECSSCCSCCSSSCSHHHHHSCCSCSSC
T ss_pred HHHHHHHHHHHHHHHHhhCCCeEEEEecCCCcCcHHHHHHHHHHHHhcCCCcCCCCCccchhHHHHHHHhhcCCCCCCCC
Confidence 677888888877642 224444433222 334456889998 999986654322111111 11111221 11
Q ss_pred HhhhcCCCEEEEeCCccccccc--cCCCcc-ccCCCeEEEecCChhhcc
Q psy14416 553 THALQNADLVLLLGARLNWILH--FGRAPR-FKSNVKIIQVDLNAEELH 598 (1065)
Q Consensus 553 ~~al~~aDlVI~iG~~~~~~~~--~g~~~~-~~~~~~iI~Vd~d~~~~~ 598 (1065)
..-+.++|+||.+|+.+..... ..++.+ .....++|.||+......
T Consensus 161 ~~di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~G~klividPr~t~ta 209 (715)
T 2iv2_X 161 INEIDNTDLVFVFGYNPADSHPIVANHVINAKRNGAKIIVCDPRKIETA 209 (715)
T ss_dssp GGGGGGCSEEEEESCCHHHHCHHHHHHHHHHHHTTCEEEEECSSCCHHH
T ss_pred HhHHhcCCEEEEEcCChHHhCHHHHHHHHHHHHCCCeEEEEcCCCCchh
Confidence 2346789999999988754221 111111 124579999998765443
No 140
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=38.22 E-value=2.3e+02 Score=29.37 Aligned_cols=88 Identities=13% Similarity=0.083 Sum_probs=51.8
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchh--------hhHHHhhcCCce-----EEEccCCchHHHHHHHHHHH--hCC
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVI--------ELAMACQQEGIH-----YIGMRNEQAACYAAQAIGYL--TKK 329 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~--------~l~~al~~~~i~-----~i~~~~E~~A~~~A~g~ar~--tgk 329 (1065)
.....+...++.|.+.|-+++.-+-|.... .+.+++++.++. .+........++-+. ...+ ..+
T Consensus 114 D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~ 192 (292)
T 3k4h_A 114 DNYTAAREVAEYLISLGHKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAV-EELMGLQQP 192 (292)
T ss_dssp CHHHHHHHHHHHHHHTTCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHH-HHHHTSSSC
T ss_pred CcHHHHHHHHHHHHHCCCceEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEecCCCHHHHHHHH-HHHHcCCCC
Confidence 455678889999999999988777664322 234455555543 222333333333222 2222 247
Q ss_pred CeEEEEeccccccccccccccccc
Q psy14416 330 PGVCLVVSGPGLLHTFGGMANAQI 353 (1065)
Q Consensus 330 pgv~~~tsGpG~~N~~~av~eA~~ 353 (1065)
|-+++|.+..-+.-++.++.++-.
T Consensus 193 ~~ai~~~~d~~a~g~~~al~~~g~ 216 (292)
T 3k4h_A 193 PTAIMATDDLIGLGVLSALSKKGF 216 (292)
T ss_dssp CSEEEESSHHHHHHHHHHHHHTTC
T ss_pred CcEEEEcChHHHHHHHHHHHHhCC
Confidence 889999877666666666665543
No 141
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=36.85 E-value=83 Score=33.01 Aligned_cols=118 Identities=10% Similarity=0.085 Sum_probs=64.4
Q ss_pred HHHHHHhhhcCCCEEEEEEcCCeeeeccccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchh-
Q psy14416 216 GMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVI- 294 (1065)
Q Consensus 216 ~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~- 294 (1065)
...+..+.+.++|+|. +|+. ..+. ...........++..+++.|.+.|-+++.-+-|....
T Consensus 79 ~~~~~~l~~~~iPvV~--i~~~--~~~~--------------~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~ 140 (288)
T 3gv0_A 79 DPRVRFMTERNMPFVT--HGRS--DMGI--------------EHAFHDFDNEAYAYEAVERLAQCGRKRIAVIVPPSRFS 140 (288)
T ss_dssp CHHHHHHHHTTCCEEE--ESCC--CSSC--------------CCEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSH
T ss_pred cHHHHHHhhCCCCEEE--ECCc--CCCC--------------CCcEEEeCcHHHHHHHHHHHHHCCCCeEEEEcCCcccc
Confidence 3556677788898654 4433 1110 0011122345678889999999999998777664322
Q ss_pred -------hhHHHhhcCCceEEE-----ccCCchHHHHHHHHHHH--hCCCeEEEEecccccccccccccccc
Q psy14416 295 -------ELAMACQQEGIHYIG-----MRNEQAACYAAQAIGYL--TKKPGVCLVVSGPGLLHTFGGMANAQ 352 (1065)
Q Consensus 295 -------~l~~al~~~~i~~i~-----~~~E~~A~~~A~g~ar~--tgkpgv~~~tsGpG~~N~~~av~eA~ 352 (1065)
.+.+++++.++.+.. ...+...++-+. ...+ ..+|-+++|.+..-+.-++.++.++-
T Consensus 141 ~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g 211 (288)
T 3gv0_A 141 FHDHARKGFNRGIRDFGLTEFPIDAVTIETPLEKIRDFG-QRLMQSSDRPDGIVSISGSSTIALVAGFEAAG 211 (288)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSCCTTSCHHHHHHHH-HHHTTSSSCCSEEEESCHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHcCCCcchhheeccccchHHHHHHH-HHHHhCCCCCcEEEEcCcHHHHHHHHHHHHcC
Confidence 234456666655432 122222222221 1122 24688899987766555555555543
No 142
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=36.80 E-value=2.2e+02 Score=29.58 Aligned_cols=86 Identities=13% Similarity=0.016 Sum_probs=47.8
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCc-h--------hhhHHHhhcCCceE-----EEccCCchHHHHHHHHHHHh--C
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIP-V--------IELAMACQQEGIHY-----IGMRNEQAACYAAQAIGYLT--K 328 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~-~--------~~l~~al~~~~i~~-----i~~~~E~~A~~~A~g~ar~t--g 328 (1065)
....++...++.|.+.|-+++.-+-|.. . ..+.+++++.++++ +........++.+. -..++ .
T Consensus 116 D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~ 194 (289)
T 2fep_A 116 DYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEAL-QHLMSLDK 194 (289)
T ss_dssp CHHHHHHHHHHHHHHTTCSSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEECCSCHHHHHHHH-HHHTTSSS
T ss_pred CcHHHHHHHHHHHHHCCCCeEEEEeCCccccccHHHHHHHHHHHHHHcCCCCChheEeeCCCCHHHHHHHH-HHHHcCCC
Confidence 4556788889999999998876665543 1 12344565556442 22222223332221 11222 4
Q ss_pred CCeEEEEeccccccccccccccc
Q psy14416 329 KPGVCLVVSGPGLLHTFGGMANA 351 (1065)
Q Consensus 329 kpgv~~~tsGpG~~N~~~av~eA 351 (1065)
+|-+++|.+..-+.-++.++.++
T Consensus 195 ~~~ai~~~~d~~A~g~~~al~~~ 217 (289)
T 2fep_A 195 KPTAILSATDEMALGIIHAAQDQ 217 (289)
T ss_dssp CCSEEEESSHHHHHHHHHHHHHT
T ss_pred CCCEEEECCHHHHHHHHHHHHHc
Confidence 68888888766554455555444
No 143
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=36.65 E-value=1.2e+02 Score=31.09 Aligned_cols=121 Identities=12% Similarity=0.039 Sum_probs=65.6
Q ss_pred cHHHHHHhhhcCCCEEEEEEcCCeeeeccccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhc----CceEEEeecC
Q psy14416 215 SGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQ----GIEYVFGIVG 290 (1065)
Q Consensus 215 ~~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~----GV~~vfg~pG 290 (1065)
....+..+.+.++|++.+ |+. ..+. . ............+..+++.|.+. |-+++.-+-|
T Consensus 73 ~~~~~~~~~~~~ipvV~~--~~~--~~~~-----~--------~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~ 135 (276)
T 3ksm_A 73 LTPSVAQYRARNIPVLVV--DSD--LAGD-----A--------HQGLVATDNYAAGQLAARALLATLDLSKERNIALLRL 135 (276)
T ss_dssp THHHHHHHHHTTCCEEEE--SSC--CSSS-----C--------SSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECBC
T ss_pred HHHHHHHHHHCCCcEEEE--ecC--CCCC-----C--------cceEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEEc
Confidence 455677777888887654 332 1000 0 00001223456778889999998 9998877766
Q ss_pred Cch--------hhhHHHhhcC-CceEEEccC---CchHHHHHHH-HHHHhCCCeEEEEecccccccccccccccc
Q psy14416 291 IPV--------IELAMACQQE-GIHYIGMRN---EQAACYAAQA-IGYLTKKPGVCLVVSGPGLLHTFGGMANAQ 352 (1065)
Q Consensus 291 ~~~--------~~l~~al~~~-~i~~i~~~~---E~~A~~~A~g-~ar~tgkpgv~~~tsGpG~~N~~~av~eA~ 352 (1065)
... ..+.+++++. ++++..... ....++-+.- +-+...+|-+++|.+...+.-++.++.++-
T Consensus 136 ~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g 210 (276)
T 3ksm_A 136 RAGNASTDQREQGFLDVLRKHDKIRIIAAPYAGDDRGAARSEMLRLLKETPTIDGLFTPNESTTIGALVAIRQSG 210 (276)
T ss_dssp CTTCHHHHHHHHHHHHHHTTCTTEEEEECCBCCSSHHHHHHHHHHHHHHCSCCCEEECCSHHHHHHHHHHHHHTT
T ss_pred CCCchhHHHHHHHHHHHHHhCCCcEEEEEecCCCcHHHHHHHHHHHHHhCCCceEEEECCchhhhHHHHHHHHcC
Confidence 422 2244456555 777653221 2222222221 111234788888887765555555555543
No 144
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=35.94 E-value=2e+02 Score=30.00 Aligned_cols=87 Identities=13% Similarity=0.025 Sum_probs=48.1
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCch--------hhhHHHhhcCCce-----EEEccCCchHHHHHH-HHHHHhCCC
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPV--------IELAMACQQEGIH-----YIGMRNEQAACYAAQ-AIGYLTKKP 330 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~--------~~l~~al~~~~i~-----~i~~~~E~~A~~~A~-g~ar~tgkp 330 (1065)
....++..+++.|.+.|-+++.-+-|... ..+.+++++.+++ .+........++.+. -+-....+|
T Consensus 111 D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 190 (290)
T 2rgy_A 111 DHRRGGELAAATLIEHGHRKLAVISGPFTASDNVERLDGFFDELARHGIARDSVPLIESDFSPEGGYAATCQLLESKAPF 190 (290)
T ss_dssp CHHHHHHHHHHHHHHTTCCSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSCEEECCSSHHHHHHHHHHHHHHTCCC
T ss_pred CcHHHHHHHHHHHHHCCCceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCcccEEecCCChhHHHHHHHHHHhCCCCC
Confidence 34567788899999999998766655421 1233455555543 222222223333221 111123578
Q ss_pred eEEEEeccccccccccccccc
Q psy14416 331 GVCLVVSGPGLLHTFGGMANA 351 (1065)
Q Consensus 331 gv~~~tsGpG~~N~~~av~eA 351 (1065)
-+++|.+..-+.-++.++.++
T Consensus 191 ~ai~~~~d~~A~g~~~al~~~ 211 (290)
T 2rgy_A 191 TGLFCANDTMAVSALARFQQL 211 (290)
T ss_dssp SEEEESSHHHHHHHHHHHHHT
T ss_pred cEEEECCcHHHHHHHHHHHHc
Confidence 899988776555555555554
No 145
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=35.74 E-value=2.1e+02 Score=29.70 Aligned_cols=87 Identities=13% Similarity=0.098 Sum_probs=46.9
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCch--------hhhHHHhhcCCceE--EEccCCchHHHHHHH---HHHHhCCCe
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPV--------IELAMACQQEGIHY--IGMRNEQAACYAAQA---IGYLTKKPG 331 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~--------~~l~~al~~~~i~~--i~~~~E~~A~~~A~g---~ar~tgkpg 331 (1065)
....++..+++.|.+.|-+++.-+-|... ..+.+++++.++++ +........++-+.- +-+...+|-
T Consensus 107 D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 186 (285)
T 3c3k_A 107 DDVAASEYVVDQLVKSGKKRIALINHDLAYQYAQHRESGYLNRLKFHGLDYSRISYAENLDYMAGKLATFSLLKSAVKPD 186 (285)
T ss_dssp CHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHHHHHHTCCCCEEEECSSSSHHHHHHHHHHHHSSSSCCS
T ss_pred ChHHHHHHHHHHHHHcCCCeEEEEeCCCccccHHHHHHHHHHHHHHcCCCceEeecCCChHHHHHHHHHHHHHcCCCCCe
Confidence 34567788899999999998766655421 12344455555442 222222222332221 111123688
Q ss_pred EEEEeccccccccccccccc
Q psy14416 332 VCLVVSGPGLLHTFGGMANA 351 (1065)
Q Consensus 332 v~~~tsGpG~~N~~~av~eA 351 (1065)
+++|.+..-+.-++.++.++
T Consensus 187 ai~~~~d~~A~g~~~al~~~ 206 (285)
T 3c3k_A 187 AIFAISDVLAAGAIQALTES 206 (285)
T ss_dssp EEEESSHHHHHHHHHHHHHT
T ss_pred EEEECCHHHHHHHHHHHHHc
Confidence 88887766555455555443
No 146
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=35.22 E-value=1.9e+02 Score=30.03 Aligned_cols=86 Identities=8% Similarity=0.018 Sum_probs=47.4
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCch--------hhhHHHhhcCCceE-----EEccCCchHHHHHHHHHHHh---C
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPV--------IELAMACQQEGIHY-----IGMRNEQAACYAAQAIGYLT---K 328 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~--------~~l~~al~~~~i~~-----i~~~~E~~A~~~A~g~ar~t---g 328 (1065)
....++...++.|.+.|-+++.-+-|... ..+.+++++.++++ +........++.+. -..+. .
T Consensus 108 D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~ 186 (287)
T 3bbl_A 108 DGTAGTRQAVEYLIGRGHRRIAILAWPEDSRVGNDRLQGYLEAMQTAQLPIETGYILRGEGTFEVGRAMT-LHLLDLSPE 186 (287)
T ss_dssp CHHHHHHHHHHHHHHHTCCCEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHH-HHHHTSCTT
T ss_pred ccHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHHHHHHH-HHHHhhCCC
Confidence 34567788889999999988766655321 12344555566542 22222223333221 11223 2
Q ss_pred -CCeEEEEeccccccccccccccc
Q psy14416 329 -KPGVCLVVSGPGLLHTFGGMANA 351 (1065)
Q Consensus 329 -kpgv~~~tsGpG~~N~~~av~eA 351 (1065)
+|-+++|.+..-+.-++.++.++
T Consensus 187 ~~~~ai~~~~d~~a~g~~~al~~~ 210 (287)
T 3bbl_A 187 RRPTAIMTLNDTMAIGAMAAARER 210 (287)
T ss_dssp TSCSEEEESSHHHHHHHHHHHHHT
T ss_pred CCCcEEEECCcHHHHHHHHHHHHc
Confidence 67888888766555555555554
No 147
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=34.80 E-value=2.2e+02 Score=30.43 Aligned_cols=86 Identities=13% Similarity=0.040 Sum_probs=47.8
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCch--------hhhHHHhhcCCceE----EEc-cCCchHHHHHHHHHHHhCCCe
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPV--------IELAMACQQEGIHY----IGM-RNEQAACYAAQAIGYLTKKPG 331 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~--------~~l~~al~~~~i~~----i~~-~~E~~A~~~A~g~ar~tgkpg 331 (1065)
....++...++.|.+.|-+++.-+-|... ..+.+++++.++++ +.. ......++-+.- ..+..+|-
T Consensus 163 D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~-~ll~~~~~ 241 (332)
T 2o20_A 163 DYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAE-RLLERGAT 241 (332)
T ss_dssp CHHHHHHHHHHHHHHTTCSSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEECSCCSHHHHHHHHH-HHHHTTCC
T ss_pred ChHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHHHHHHHH-HHhccCCC
Confidence 34567788899999999998876665422 12344566666542 222 122222332211 11222899
Q ss_pred EEEEeccccccccccccccc
Q psy14416 332 VCLVVSGPGLLHTFGGMANA 351 (1065)
Q Consensus 332 v~~~tsGpG~~N~~~av~eA 351 (1065)
+++|.+..-+.-++.++.++
T Consensus 242 ai~~~~d~~A~g~~~al~~~ 261 (332)
T 2o20_A 242 SAVVSHDTVAVGLLSAMMDK 261 (332)
T ss_dssp EEEESCHHHHHHHHHHHHHT
T ss_pred EEEECChHHHHHHHHHHHHc
Confidence 99998766554455444443
No 148
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=33.35 E-value=1.2e+02 Score=31.56 Aligned_cols=86 Identities=14% Similarity=0.096 Sum_probs=47.6
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCch--------hhhHHHhhcCCceEE--EccCCchHHHHHHHHHHHh---CCCe
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPV--------IELAMACQQEGIHYI--GMRNEQAACYAAQAIGYLT---KKPG 331 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~--------~~l~~al~~~~i~~i--~~~~E~~A~~~A~g~ar~t---gkpg 331 (1065)
.....+..+++.|.+.|-+++.-+.|... ..+.+++++.++++. ........++.+. -..+. .+|-
T Consensus 101 D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~ 179 (277)
T 3cs3_A 101 DNRGGATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVSTRELTRFGIPYEIIQGDFTEPSGYAAA-KKILSQPQTEPV 179 (277)
T ss_dssp CHHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCEEEEECCSSHHHHHHHH-HHHTTSCCCSSE
T ss_pred CcHHHHHHHHHHHHHcCCceEEEEeCCccCccHHHHHHHHHHHHHHcCCCeeEEeCCCChhHHHHHH-HHHHhcCCCCCc
Confidence 34567788889999999988766655422 123345566676543 2222222233221 11222 3688
Q ss_pred EEEEeccccccccccccccc
Q psy14416 332 VCLVVSGPGLLHTFGGMANA 351 (1065)
Q Consensus 332 v~~~tsGpG~~N~~~av~eA 351 (1065)
+++|.+..-+.-++.++.++
T Consensus 180 ai~~~~d~~a~g~~~al~~~ 199 (277)
T 3cs3_A 180 DVFAFNDEMAIGVYKYVAET 199 (277)
T ss_dssp EEEESSHHHHHHHHHHHTTS
T ss_pred EEEEcChHHHHHHHHHHHHc
Confidence 88887766555455554443
No 149
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=33.27 E-value=1.8e+02 Score=30.32 Aligned_cols=150 Identities=7% Similarity=-0.038 Sum_probs=74.2
Q ss_pred cCccHHHHHHHHHHhcCc--eEEEeec----CC--------chhhhHHHhhcCC--ceEEE---ccCCchHHHHH-HHHH
Q psy14416 265 EELSANQVIAQALKFQGI--EYVFGIV----GI--------PVIELAMACQQEG--IHYIG---MRNEQAACYAA-QAIG 324 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV--~~vfg~p----G~--------~~~~l~~al~~~~--i~~i~---~~~E~~A~~~A-~g~a 324 (1065)
.....+..+++.|.+.|- +++.-+- |. +...+.+++++.+ ++... .......++.+ .-+-
T Consensus 116 D~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 195 (304)
T 3gbv_A 116 NSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFF 195 (304)
T ss_dssp CHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHH
Confidence 355678889999999988 7776664 32 1122344555443 33322 22222222222 2222
Q ss_pred HHhCCCeEEEEeccccccccccccccccccCcceEeecCCCccCCCCCCCCCccCh-hhhh-cccccEEeeCCChhhHHH
Q psy14416 325 YLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQ-VELA-RPYCKYSARPPNIHLIGQ 402 (1065)
Q Consensus 325 r~tgkpgv~~~tsGpG~~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ-~~l~-~~~~k~s~~l~~~~~i~~ 402 (1065)
+...+|-+++|.+.. +.-++.++.++-.+.+.++-+-+. +. ..++ .+.+..+...+..+-...
T Consensus 196 ~~~~~~~ai~~~~d~-a~g~~~al~~~g~~di~vig~d~~--------------~~~~~~~~~~~~~~tv~~~~~~~g~~ 260 (304)
T 3gbv_A 196 REHPDVKHGITFNSK-VYIIGEYLQQRRKSDFSLIGYDLL--------------ERNVTCLKEGTVSFLIAQQPELQGFN 260 (304)
T ss_dssp HHCTTCCEEEESSSC-THHHHHHHHHTTCCSCEEEEESCC--------------HHHHHHHHHTSEEEEEECCHHHHHHH
T ss_pred HhCCCeEEEEEcCcc-hHHHHHHHHHcCCCCcEEEEeCCC--------------HHHHHHHHcCceEEEEEeCHHHHHHH
Confidence 233478899998877 655666666554433333222111 11 2222 334444555433333344
Q ss_pred HHHHHHHHhhcCCCCEEEEecChhhhh
Q psy14416 403 HVEKAVRLSTFGKPGVSYLDFPANLLA 429 (1065)
Q Consensus 403 ~i~~A~~~A~~~~~GPV~L~iP~Dv~~ 429 (1065)
.++..++....+...|-++.+|..+..
T Consensus 261 av~~l~~~i~~~~~~~~~~~~~~~lv~ 287 (304)
T 3gbv_A 261 SIKTLCDHLIFRKEVACTNYMPIDLLT 287 (304)
T ss_dssp HHHHHHHHHTSCCCCCSEEECCCEEEC
T ss_pred HHHHHHHHHhcCCCCCceeecCcEEEE
Confidence 444444444344444567777766543
No 150
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=32.61 E-value=1.7e+02 Score=30.39 Aligned_cols=89 Identities=13% Similarity=0.068 Sum_probs=49.3
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchh--------hhHHHhhcCCceE----E-EccCCchHHHHH-HHHHHHhCCC
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVI--------ELAMACQQEGIHY----I-GMRNEQAACYAA-QAIGYLTKKP 330 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~--------~l~~al~~~~i~~----i-~~~~E~~A~~~A-~g~ar~tgkp 330 (1065)
.....+..+++.|.+.|-+++.-+.|.... .+.+++++.++.+ + ....+...++.+ .-+-....+|
T Consensus 108 D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 187 (291)
T 3egc_A 108 ENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRP 187 (291)
T ss_dssp CHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCC
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHHhCCCCC
Confidence 355678889999999999988777665322 2334455555432 2 222222222211 1111124578
Q ss_pred eEEEEeccccccccccccccccc
Q psy14416 331 GVCLVVSGPGLLHTFGGMANAQI 353 (1065)
Q Consensus 331 gv~~~tsGpG~~N~~~av~eA~~ 353 (1065)
-+++|.+..-+.-++.++.++-.
T Consensus 188 ~ai~~~~d~~a~g~~~al~~~g~ 210 (291)
T 3egc_A 188 TALLTSSHRITEGAMQALNVLGL 210 (291)
T ss_dssp SEEEESSHHHHHHHHHHHHHHTC
T ss_pred cEEEECCcHHHHHHHHHHHHcCC
Confidence 89999877766666666666544
No 151
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=31.66 E-value=76 Score=34.36 Aligned_cols=89 Identities=8% Similarity=0.028 Sum_probs=52.2
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchh--------hhHHHhhcCCceEEEc--cCCchHHHHHHHHHHHhCCCeEEE
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVI--------ELAMACQQEGIHYIGM--RNEQAACYAAQAIGYLTKKPGVCL 334 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~--------~l~~al~~~~i~~i~~--~~E~~A~~~A~g~ar~tgkpgv~~ 334 (1065)
.+..++...++.|.+.|-+++.-+-|.... .+.+++++.++.++.. ......++.+.---...+.|-+++
T Consensus 157 D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~ 236 (333)
T 3jvd_A 157 DDEAGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGISHAASIYGAEVTFHFGHYSVESGEEMAQVVFNNGLPDALI 236 (333)
T ss_dssp CHHHHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHHHHTCCCSEEE
T ss_pred ChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHhcCCCCcEEE
Confidence 456788889999999999998777664222 2344566677764332 222333333222111222388899
Q ss_pred Eeccccccccccccccccc
Q psy14416 335 VVSGPGLLHTFGGMANAQI 353 (1065)
Q Consensus 335 ~tsGpG~~N~~~av~eA~~ 353 (1065)
|.+..-+.-++.++.++-.
T Consensus 237 ~~nd~~A~g~~~al~~~G~ 255 (333)
T 3jvd_A 237 VASPRLMAGVMRAFTRLNV 255 (333)
T ss_dssp ECCHHHHHHHHHHHHHTTC
T ss_pred ECCHHHHHHHHHHHHHcCC
Confidence 9877655555555555533
No 152
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=31.56 E-value=1.4e+02 Score=31.00 Aligned_cols=90 Identities=11% Similarity=0.049 Sum_probs=52.5
Q ss_pred cCccHHHHHHHHHHh--cCceEEEeecCCch--------hhhHHHhhcC-CceEEEcc------CCchHHHHHH-HHHHH
Q psy14416 265 EELSANQVIAQALKF--QGIEYVFGIVGIPV--------IELAMACQQE-GIHYIGMR------NEQAACYAAQ-AIGYL 326 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~--~GV~~vfg~pG~~~--------~~l~~al~~~-~i~~i~~~------~E~~A~~~A~-g~ar~ 326 (1065)
.....+..+++.|.+ .|-+++.-+-|... ..+.+++++. +++.+... .....++-+. -+-+.
T Consensus 106 D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 185 (291)
T 3l49_A 106 NNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTK 185 (291)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHh
Confidence 345677888999999 89998877766422 2234455555 57644211 1112222221 11112
Q ss_pred hC---CCeEEEEecccccccccccccccccc
Q psy14416 327 TK---KPGVCLVVSGPGLLHTFGGMANAQIN 354 (1065)
Q Consensus 327 tg---kpgv~~~tsGpG~~N~~~av~eA~~~ 354 (1065)
.. +|-+++|.+...+.-++.++.++-..
T Consensus 186 ~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 216 (291)
T 3l49_A 186 YPNEGDVGAIWACWDVPMIGATQALQAAGRT 216 (291)
T ss_dssp CCSTTSCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCcCCcCEEEECCCchHHHHHHHHHHcCCC
Confidence 23 68899998877777677777766554
No 153
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=31.39 E-value=1.4e+02 Score=31.57 Aligned_cols=73 Identities=16% Similarity=0.231 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhCCC--cEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHHHHhhhcCCCEEEEe
Q psy14416 488 ELKQASRLILEAKA--PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLL 565 (1065)
Q Consensus 488 ~v~~~ae~L~~Akr--PvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~~~~al~~aDlVI~i 565 (1065)
.+..++..+...++ -++++|. ...+...++++|++.|.+.++.-.-.|.+..... ..+..||+|+++
T Consensus 56 ~L~~A~~~i~~i~~~~~vlfVgT---k~~~q~~V~k~A~~~g~~~v~~rwlgGtLTN~~t--------~~f~~PdllvV~ 124 (252)
T 3u5c_A 56 KLVLAARIIAAIPNPEDVVAISS---RTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYIT--------RSFKEPRLVIVT 124 (252)
T ss_dssp HHHHHHHHHTTSSSGGGEEEEEC---SHHHHHHHHHHHHHSSCEEEESCCCTTSSSCTTS--------TTCCCCSEEEES
T ss_pred HHHHHHHHHHHHhcCCEEEEEeC---CcHHHHHHHHHHHHhCCceecCcccCCcccChhh--------hhccCCceEEEe
Confidence 44555555554433 3788885 2356788999999999998877554455543221 246799999999
Q ss_pred CCcccc
Q psy14416 566 GARLNW 571 (1065)
Q Consensus 566 G~~~~~ 571 (1065)
..+-+.
T Consensus 125 Dp~~d~ 130 (252)
T 3u5c_A 125 DPRSDA 130 (252)
T ss_dssp CTTTTH
T ss_pred CCccch
Confidence 877554
No 154
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=31.09 E-value=2e+02 Score=29.00 Aligned_cols=100 Identities=16% Similarity=0.176 Sum_probs=59.8
Q ss_pred cHHHHHHHHHHhCCCcEEEEeCCCChHHHHHH--HH------hCCCeEEEecChhhHHHH---HHHH--------HHhcC
Q psy14416 10 SANQVIAQALKFQGIEYVFGIVGIPVIELAMA--CQ------QEGIHYIGMRNEQAACYA---AQAI--------GYLTK 70 (1065)
Q Consensus 10 t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~a--l~------~~~i~~v~~rhE~~A~~m---A~gy--------ar~tg 70 (1065)
..++.+++.|++.|-=++||+-++.......+ |. +.+++.+....+.....+ ..+| ...-+
T Consensus 34 ~a~~~i~~al~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~r~g~~~~~~~~d~~~~~a~~~d~~~~~~~~~~l~~~~~ 113 (201)
T 3trj_A 34 QAAKAMVSCLENGGKVLVCGNGSSGVIAQHFTSKLLNHFEMERPPLPAIALTGDVATITAVGNHYGFSQIFAKQVAALGN 113 (201)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHC-------CCCEEETTSCHHHHHHHHHHTCGGGTTHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhcCccCCCCCCCceEEccCChHHHHHhccCCCHHHHHHHHHHhhCC
Confidence 45677778888888889999766655433322 32 246666554423221110 0111 11123
Q ss_pred CcEEEEEeCCcc-hhhhhHHHhhcccCCCcEEEEecCCCC
Q psy14416 71 KPGVCLVVSGPG-LLHTFGGMANAQINCWPMLVIGGSCAQ 109 (1065)
Q Consensus 71 ~~gv~~~t~GPG-~~N~l~gla~A~~~~~Pll~Isg~~~~ 109 (1065)
+--++++.|..| ..+.+.++..|+..+.|+|.||+....
T Consensus 114 ~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~s 153 (201)
T 3trj_A 114 EDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGG 153 (201)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTCC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 344555555555 778888999999999999999976544
No 155
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=30.15 E-value=1.4e+02 Score=31.50 Aligned_cols=74 Identities=11% Similarity=0.250 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhCCCc--EEEEccCCCchhHHHHHHHHHhhcCCCEE-ecCCCCCCCCCCCcccccHHHHhhhcCCCEEE
Q psy14416 487 AELKQASRLILEAKAP--LVIIGKGAAYSQAETELLSFVNSFNLPFL-PTPMGKGVVPDAHPNCVSAARTHALQNADLVL 563 (1065)
Q Consensus 487 ~~v~~~ae~L~~AkrP--vIlvG~g~~~~~a~~~L~~LAe~lg~PV~-tt~~gkg~v~~~hpl~lg~~~~~al~~aDlVI 563 (1065)
..+..+++.+...++| ++++|. ...+.+.++++|++.|.+.+ ..-.-.|.+..... ..+..||+|+
T Consensus 51 ~~L~~A~~~i~~i~~~~~iLfVgt---k~~~~~~V~~~A~~~g~~yv~~~RWlgG~LTN~~t--------~~~~~Pdlli 119 (241)
T 2xzm_B 51 QKIKLAARVIAAVQHPEDVMVVCS---RIYGQRAAIKFAGYTHCKSTSSSRWTPGTLTNYQT--------LKYEEPRVLI 119 (241)
T ss_dssp HHHHHHHHHHHHCSSGGGEEEECC---SHHHHHHHHHHHHHHTCBCCCCSSCCTTTTTCTTC--------TTCCCCSEEE
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEC---CHHHHHHHHHHHHHhCCEEeccccccCCcccCccc--------cccCCCCEEE
Confidence 4456666667665433 788885 34566789999999999977 55443354432211 2457899999
Q ss_pred EeCCcccc
Q psy14416 564 LLGARLNW 571 (1065)
Q Consensus 564 ~iG~~~~~ 571 (1065)
++..+-+.
T Consensus 120 V~Dp~~e~ 127 (241)
T 2xzm_B 120 VTDPRSDF 127 (241)
T ss_dssp ESCTTTTH
T ss_pred EECCCcch
Confidence 99876543
No 156
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=29.59 E-value=2.2e+02 Score=29.46 Aligned_cols=120 Identities=13% Similarity=0.105 Sum_probs=62.6
Q ss_pred cHHHHHHhhhcCCCEEEEEEcCCeeeeccccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCch-
Q psy14416 215 SGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPV- 293 (1065)
Q Consensus 215 ~~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~- 293 (1065)
....+..+.+.++|++.+ |+. . -+. ............+..+++.|.+.|.+++..+-|...
T Consensus 88 ~~~~~~~~~~~~iPvV~~--~~~-~-~~~--------------~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~ 149 (298)
T 3tb6_A 88 NIGYYLNLEKNGIPFAMI--NAS-Y-AEL--------------AAPSFTLDDVKGGMMAAEHLLSLGHTHMMGIFKADDT 149 (298)
T ss_dssp THHHHHHHHHTTCCEEEE--SSC-C-TTC--------------SSCEEEECHHHHHHHHHHHHHHTTCCSEEEEEESSSH
T ss_pred cHHHHHHHHhcCCCEEEE--ecC-c-CCC--------------CCCEEEeCcHHHHHHHHHHHHHCCCCcEEEEcCCCCc
Confidence 345666777888887654 322 0 000 111112345677888999999999998766544322
Q ss_pred ------hhhHHHhhcCCce-----EEEccCCch-H-HHHH-HHHHHHhCC--CeEEEEecccccccccccccccc
Q psy14416 294 ------IELAMACQQEGIH-----YIGMRNEQA-A-CYAA-QAIGYLTKK--PGVCLVVSGPGLLHTFGGMANAQ 352 (1065)
Q Consensus 294 ------~~l~~al~~~~i~-----~i~~~~E~~-A-~~~A-~g~ar~tgk--pgv~~~tsGpG~~N~~~av~eA~ 352 (1065)
..+.+++++.++. ++....+.. . ++-+ .-+-+...+ |-+++|.+..-+.-++.++.++-
T Consensus 150 ~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~g 224 (298)
T 3tb6_A 150 QGVKRMNGFIQAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAILCYNDEIALKVIDMLREMD 224 (298)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEECSSHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEEEEeCcHHHHHHHHHHHHcC
Confidence 2234455555543 222221111 1 1211 112122344 88999887765555655555543
No 157
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=29.06 E-value=1.4e+02 Score=32.61 Aligned_cols=87 Identities=14% Similarity=0.025 Sum_probs=48.1
Q ss_pred cCccHHHHHHHHHHhcCceEEEeec---------C-----------C-----chhhhHHHhhcCCce-----EEEc-cCC
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIV---------G-----------I-----PVIELAMACQQEGIH-----YIGM-RNE 313 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~p---------G-----------~-----~~~~l~~al~~~~i~-----~i~~-~~E 313 (1065)
.+..++...++.|.+.|-+++--+- | . +...+.+++++.++. ++.. ...
T Consensus 172 D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~ 251 (366)
T 3h5t_A 172 NNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIMECWINN 251 (366)
T ss_dssp CHHHHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCHHHHHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEEESSCC
T ss_pred ChHHHHHHHHHHHHHCCCCcEEEEecccccccccCccccccccccccchHHHHHHHHHHHHHHCCCCCCcceEEEcCCCC
Confidence 4556778899999999999865543 2 1 122344556555543 2322 223
Q ss_pred chHHHHHHH-HHHHhCCCeEEEEeccccccccccccccc
Q psy14416 314 QAACYAAQA-IGYLTKKPGVCLVVSGPGLLHTFGGMANA 351 (1065)
Q Consensus 314 ~~A~~~A~g-~ar~tgkpgv~~~tsGpG~~N~~~av~eA 351 (1065)
...++.+.- +-....+|-+++|.+..-+.-++.++.++
T Consensus 252 ~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~ 290 (366)
T 3h5t_A 252 RQHNFEVAKELLETHPDLTAVLCTVDALAFGVLEYLKSV 290 (366)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCcEEEECCcHHHHHHHHHHHHc
Confidence 333332221 21234578999998776555555555544
No 158
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=28.77 E-value=4.4e+02 Score=27.54 Aligned_cols=87 Identities=13% Similarity=-0.034 Sum_probs=47.9
Q ss_pred cCccHHHHHHHHHHhc--CceEEEeecCCch--------hhhHHHhhcCCceEEEc---cCCchHHHHHHH-HHHHhCCC
Q psy14416 265 EELSANQVIAQALKFQ--GIEYVFGIVGIPV--------IELAMACQQEGIHYIGM---RNEQAACYAAQA-IGYLTKKP 330 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~--GV~~vfg~pG~~~--------~~l~~al~~~~i~~i~~---~~E~~A~~~A~g-~ar~tgkp 330 (1065)
.....+..+++.|.+. |-+++.-+-|... ..+.+++++.+++++.. ..+...++.+.- +-....+|
T Consensus 104 d~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 183 (313)
T 2h3h_A 104 DNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIVDILNDEEDGARAVSLAEAALNAHPDL 183 (313)
T ss_dssp CHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHHHHTTSSCEEEEEEECSSCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccHHHHHHHHHHHhcCCCCEEEEeecCCCCHHHHHHHHHHHHHHCcCc
Confidence 3445677788888888 8888776665421 22344566677765432 222222222211 11122367
Q ss_pred eEEEEeccccccccccccccc
Q psy14416 331 GVCLVVSGPGLLHTFGGMANA 351 (1065)
Q Consensus 331 gv~~~tsGpG~~N~~~av~eA 351 (1065)
-+++|.+...+.-++.++.++
T Consensus 184 ~ai~~~~d~~a~g~~~al~~~ 204 (313)
T 2h3h_A 184 DAFFGVYAYNGPAQALVVKNA 204 (313)
T ss_dssp CEEEECSTTHHHHHHHHHHHT
T ss_pred eEEEEcCCCccHHHHHHHHHc
Confidence 888888776555555554443
No 159
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=28.76 E-value=1.9e+02 Score=31.43 Aligned_cols=73 Identities=14% Similarity=0.262 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHHHHhhhcCCCEEEEe
Q psy14416 488 ELKQASRLILEAK--APLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLL 565 (1065)
Q Consensus 488 ~v~~~ae~L~~Ak--rPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~~~~al~~aDlVI~i 565 (1065)
.+..+++.+...+ .-++++|. +..+...++++|++.|.+.++.-.-.|.+..... ..+..+|+||++
T Consensus 61 ~L~~Aa~~I~~i~~~~~ILfVgT---k~~aq~aV~k~A~~tG~~yV~~RWlgGtLTN~~t--------~~f~ePdllvV~ 129 (305)
T 3iz6_A 61 KLQLAARVIVAIENPQDIIVQSA---RPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQ--------TSFSEPRLLILT 129 (305)
T ss_dssp HHHHHHHHHHHTTSSCCEEEECC---SHHHHHHHHHHHHHHTCEEECSCCCTTTTTTTTT--------SCSSCCSEEEES
T ss_pred HHHHHHHHHHHHhCCCeEEEEeC---cHHHHHHHHHHHHHhCCccccCcccCCcccCccc--------ccccCCceeEEe
Confidence 4455555555443 34788884 2356788999999999998876554455543221 235799999999
Q ss_pred CCcccc
Q psy14416 566 GARLNW 571 (1065)
Q Consensus 566 G~~~~~ 571 (1065)
..+-+.
T Consensus 130 Dp~~d~ 135 (305)
T 3iz6_A 130 DPRTDH 135 (305)
T ss_dssp CTTTTH
T ss_pred Ccccch
Confidence 876554
No 160
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=28.68 E-value=2.8e+02 Score=29.67 Aligned_cols=87 Identities=6% Similarity=-0.099 Sum_probs=48.9
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCch-------hhhHHHhhcCCc-----eEEEcc-CCchHHHHHHH-HHHHhCCC
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPV-------IELAMACQQEGI-----HYIGMR-NEQAACYAAQA-IGYLTKKP 330 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~-------~~l~~al~~~~i-----~~i~~~-~E~~A~~~A~g-~ar~tgkp 330 (1065)
....++...++.|.+.|-+++--+-|... ..+.+++++.++ .++... .....++.+.- +-+...+|
T Consensus 161 D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 240 (339)
T 3h5o_A 161 SQEDAGAAITRHLLSRGKRRIGFLGAQLDERVMKRLDGYRAALDAADCRDAGLEWLDPQPSSMQMGADMLDRALAERPDC 240 (339)
T ss_dssp CHHHHHHHHHHHHHHTTCCSEEEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECSCCCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHHCCCCeEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCChheEecCCCCHHHHHHHHHHHHcCCCCC
Confidence 35567888999999999998766655422 223445555554 344322 22222322211 11223578
Q ss_pred eEEEEeccccccccccccccc
Q psy14416 331 GVCLVVSGPGLLHTFGGMANA 351 (1065)
Q Consensus 331 gv~~~tsGpG~~N~~~av~eA 351 (1065)
-+++|.+..-+.-++.++.++
T Consensus 241 ~ai~~~nD~~A~g~~~al~~~ 261 (339)
T 3h5o_A 241 DALFCCNDDLAIGALARSQQL 261 (339)
T ss_dssp CEEEESSHHHHHHHHHHHHHT
T ss_pred cEEEECChHHHHHHHHHHHHc
Confidence 899998776655555555554
No 161
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=27.68 E-value=1.3e+02 Score=30.97 Aligned_cols=34 Identities=6% Similarity=0.171 Sum_probs=22.4
Q ss_pred EEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCC
Q psy14416 930 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNN 969 (1065)
Q Consensus 930 ~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~ 969 (1065)
|++.|.|++ .+.+...+++++. +..|..||-|+.
T Consensus 12 vl~SG~gsn----l~all~~~~~~~l--~~~I~~Visn~~ 45 (209)
T 4ds3_A 12 IFISGGGSN----MEALIRAAQAPGF--PAEIVAVFSDKA 45 (209)
T ss_dssp EEESSCCHH----HHHHHHHHTSTTC--SEEEEEEEESCT
T ss_pred EEEECCcHH----HHHHHHHHHcCCC--CcEEEEEEECCc
Confidence 489999999 6667666333332 235777777763
No 162
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=27.49 E-value=1.5e+02 Score=30.42 Aligned_cols=74 Identities=7% Similarity=0.208 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhC-CCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHHHHhhhcCCCEEEEe
Q psy14416 487 AELKQASRLILEA-KAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLL 565 (1065)
Q Consensus 487 ~~v~~~ae~L~~A-krPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~~~~al~~aDlVI~i 565 (1065)
+.+.++++.+... ..-++++|.. ..+.+.++++|++.|.+.+..-.-.|.+.... ...+.+||+|+++
T Consensus 54 ~~L~~A~~~i~~i~~~~iLfVgTk---~~~~~~V~~~A~~~g~~~v~~rwlgG~LTN~~--------~~~f~~PdlliV~ 122 (208)
T 1vi6_A 54 ERIRVAAKFLSRYEPSKILLVAAR---QYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPM--------LSEYREPEVVFVN 122 (208)
T ss_dssp HHHHHHHHHHTTSCGGGEEEEECS---GGGHHHHHHHHHHHCCEEEESSCCTTTTTCTT--------STTCCCCSEEEES
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCC---HHHHHHHHHHHHHhCCeeecCEECCCcccChh--------hHhhCCCCEEEEE
Confidence 3455555555554 2337788852 35568899999999999997765546553322 1235689999999
Q ss_pred CCcccc
Q psy14416 566 GARLNW 571 (1065)
Q Consensus 566 G~~~~~ 571 (1065)
..+-+.
T Consensus 123 Dp~~e~ 128 (208)
T 1vi6_A 123 DPAIDK 128 (208)
T ss_dssp CTTTTH
T ss_pred CCCcch
Confidence 876543
No 163
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=27.18 E-value=2.2e+02 Score=30.23 Aligned_cols=73 Identities=16% Similarity=0.275 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHHHHhhhcCCCEEEEe
Q psy14416 488 ELKQASRLILEAK--APLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLL 565 (1065)
Q Consensus 488 ~v~~~ae~L~~Ak--rPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~~~~al~~aDlVI~i 565 (1065)
.+..++..+..++ .-++++|. ...+.+.++++|++.|.+.+..-.-.|.+..... ..+..||+|+++
T Consensus 90 ~L~~A~~~i~~~~~~~~iLfVgT---k~~aq~~V~~~A~~~g~~yv~~RWlgG~LTN~~~--------~~f~~PdlliV~ 158 (253)
T 3bch_A 90 KLLLAARAIVAIENPADVSVISS---RNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQ--------AAFREPRLLVVT 158 (253)
T ss_dssp HHHHHHHHHHTCSSGGGEEEEEC---SHHHHHHHHHHHHHHCCEEEESCCCTTTTTCCSC--------STTCSCSEEEES
T ss_pred HHHHHHHHHHHHhCCCeEEEEeC---CHHHHHHHHHHHHHhCCeeecceecCCcccCccc--------cccCCCCEEEEE
Confidence 4555666666443 33788884 2356678999999999999877554455543211 235789999999
Q ss_pred CCcccc
Q psy14416 566 GARLNW 571 (1065)
Q Consensus 566 G~~~~~ 571 (1065)
..+-+.
T Consensus 159 Dp~~e~ 164 (253)
T 3bch_A 159 DPRADH 164 (253)
T ss_dssp CTTTTH
T ss_pred CCCccc
Confidence 876553
No 164
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=26.84 E-value=3.2e+02 Score=28.07 Aligned_cols=86 Identities=8% Similarity=-0.067 Sum_probs=45.7
Q ss_pred CccHHHHHHHHHHhc-C-ceEEEeecCCch--------hhhHHHhhcCCceEE---EccCCchHHHHHH-HHHHHhCCCe
Q psy14416 266 ELSANQVIAQALKFQ-G-IEYVFGIVGIPV--------IELAMACQQEGIHYI---GMRNEQAACYAAQ-AIGYLTKKPG 331 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~-G-V~~vfg~pG~~~--------~~l~~al~~~~i~~i---~~~~E~~A~~~A~-g~ar~tgkpg 331 (1065)
....+..+++.|.+. | .+++.-+-|... ..+.+++++.++.+. ........++.+. -+-+...+|-
T Consensus 113 ~~~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (289)
T 3brs_A 113 NIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDREEGLKIGLSDDSNKIEAIYYCDSNYDKAYDGTVELLTKYPDIS 192 (289)
T ss_dssp HHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHHHHHHHHHGGGGGGEEEEEECTTCHHHHHHHHHHHHHHCTTEE
T ss_pred hHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEeeecCCCCHHHHHHHHHHHHHhCCCce
Confidence 456778888999986 7 887766655321 123344555554322 2222222222221 1111234688
Q ss_pred EEEEeccccccccccccccc
Q psy14416 332 VCLVVSGPGLLHTFGGMANA 351 (1065)
Q Consensus 332 v~~~tsGpG~~N~~~av~eA 351 (1065)
+++|.+...+.-++.++.++
T Consensus 193 ai~~~~d~~a~g~~~al~~~ 212 (289)
T 3brs_A 193 VMVGLNQYSATGAARAIKDM 212 (289)
T ss_dssp EEEESSHHHHHHHHHHHHHT
T ss_pred EEEECCCcchHHHHHHHHhc
Confidence 88888766555555555554
No 165
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=26.75 E-value=3.4e+02 Score=27.93 Aligned_cols=85 Identities=12% Similarity=-0.034 Sum_probs=45.7
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCch--------hhhHHHhhcCCceEE----E-ccCCchHHHHHHHHHHH--hCCC
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPV--------IELAMACQQEGIHYI----G-MRNEQAACYAAQAIGYL--TKKP 330 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~--------~~l~~al~~~~i~~i----~-~~~E~~A~~~A~g~ar~--tgkp 330 (1065)
....+..+++.|.+.|.+++.-+.|... ..+.+++++.++++. . .......++.+. -..+ ..+|
T Consensus 123 ~~~~~~~a~~~l~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~ 201 (296)
T 3brq_A 123 HKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGV-EMLLERGAKF 201 (296)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGEECCCSSHHHHHHHH-HHHHTC--CC
T ss_pred hHHHHHHHHHHHHHCCCceEEEEcCCCCCccHHHHHHHHHHHHHHcCCCCChhhEEeCCCChhHHHHHH-HHHHhCCCCC
Confidence 4466778889999999998877766422 123445556665432 1 111222222221 1112 2468
Q ss_pred eEEEEeccccccccccccccc
Q psy14416 331 GVCLVVSGPGLLHTFGGMANA 351 (1065)
Q Consensus 331 gv~~~tsGpG~~N~~~av~eA 351 (1065)
-+++|.+..-+.-++.++.++
T Consensus 202 ~ai~~~~d~~a~g~~~al~~~ 222 (296)
T 3brq_A 202 SALVASNDDMAIGAMKALHER 222 (296)
T ss_dssp SEEEESSHHHHHHHHHHHHHH
T ss_pred CEEEECChHHHHHHHHHHHHc
Confidence 888887766555455555444
No 166
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=25.97 E-value=4.1e+02 Score=27.01 Aligned_cols=86 Identities=8% Similarity=-0.086 Sum_probs=46.4
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCch--------hhhHHHhhcCCce----EEEccC-CchHHHHHHHHHHHh--CC
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPV--------IELAMACQQEGIH----YIGMRN-EQAACYAAQAIGYLT--KK 329 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~--------~~l~~al~~~~i~----~i~~~~-E~~A~~~A~g~ar~t--gk 329 (1065)
.....+..+++.|.+.|.+++.-+-|... ..+.+++++.+++ ++...+ ....++.+. -..++ .+
T Consensus 103 d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~ 181 (275)
T 3d8u_A 103 DHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHEAPSSQLGAEGL-AKLLLRDSS 181 (275)
T ss_dssp CHHHHHHHHHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCEEECSSCCCHHHHHHHH-HHHHTTCTT
T ss_pred ChHHHHHHHHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHHHHHHHcCCCCCccEEEeCCCChhHHHHHH-HHHHhCCCC
Confidence 34567788899999999988766655321 1234455555543 221112 222222211 11122 46
Q ss_pred CeEEEEeccccccccccccccc
Q psy14416 330 PGVCLVVSGPGLLHTFGGMANA 351 (1065)
Q Consensus 330 pgv~~~tsGpG~~N~~~av~eA 351 (1065)
|-+++|.+..-+.-++.++.++
T Consensus 182 ~~ai~~~~d~~a~g~~~al~~~ 203 (275)
T 3d8u_A 182 LNALVCSHEEIAIGALFECHRR 203 (275)
T ss_dssp CCEEEESSHHHHHHHHHHHHHT
T ss_pred CCEEEEcCcHHHHHHHHHHHHc
Confidence 8888888766555555555543
No 167
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=25.66 E-value=1.8e+02 Score=28.38 Aligned_cols=97 Identities=15% Similarity=0.179 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCCChHHHHHH--H------HhCCCeEEEecChhhHHH-----------HHHHHHHhcCC
Q psy14416 11 ANQVIAQALKFQGIEYVFGIVGIPVIELAMA--C------QQEGIHYIGMRNEQAACY-----------AAQAIGYLTKK 71 (1065)
Q Consensus 11 ~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~a--l------~~~~i~~v~~rhE~~A~~-----------mA~gyar~tg~ 71 (1065)
.++.+++.|.+.+-=++||.-++......-+ | .+.+++.+....+.+-.. ...-+...-++
T Consensus 31 ~~~~i~~~l~~~~~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (188)
T 1tk9_A 31 VGELLCECLKKGGKILICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQVEALGNE 110 (188)
T ss_dssp HHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHSCSSSCCCCCCEEESSCCHHHHHHHHHHTCGGGHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHHhhhhccCCCCCceEeccCCchhHhhhhcCCCHHHHHHHHHHHhCCC
Confidence 4455666777776556677654443332222 1 123455554432332210 01112222233
Q ss_pred cEEEEEeCCcc-hhhhhHHHhhcccCCCcEEEEecCC
Q psy14416 72 PGVCLVVSGPG-LLHTFGGMANAQINCWPMLVIGGSC 107 (1065)
Q Consensus 72 ~gv~~~t~GPG-~~N~l~gla~A~~~~~Pll~Isg~~ 107 (1065)
--++++.|-.| ..+.+..+..|+..+.|+|.||+..
T Consensus 111 ~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~ 147 (188)
T 1tk9_A 111 KDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKG 147 (188)
T ss_dssp TCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGG
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 34555555444 6778888889999999999999653
No 168
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=24.68 E-value=3.7e+02 Score=28.53 Aligned_cols=183 Identities=13% Similarity=0.060 Sum_probs=0.0
Q ss_pred CccccHHHHHHhhhcCCCEEEEEEcCCeeeeccccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecC
Q psy14416 211 AFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVG 290 (1065)
Q Consensus 211 sf~m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG 290 (1065)
+.......+..+.+.++| +|++|+. ...............++..+++.|.+.|-+++.-+-|
T Consensus 124 ~~~~~~~~~~~l~~~~iP--vV~~~~~----------------~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~ 185 (332)
T 2hsg_A 124 SGNVTEEHVEELKKSPVP--VVLAASI----------------ESTNQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSG 185 (332)
T ss_dssp CSSCCHHHHHHHTTSSSC--EEEESCC----------------CSCTTSCEEEECHHHHHHHHHHHHHTTTCSCEEEEES
T ss_pred cCCCCHHHHHHHHhCCCC--EEEEccc----------------cCCCCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeC
Q ss_pred Cc---------hhhhHHHhhcCCce-----EEEccCCchHHHHHHHHHHHhC-CCeEEEEeccccccccccccccccc--
Q psy14416 291 IP---------VIELAMACQQEGIH-----YIGMRNEQAACYAAQAIGYLTK-KPGVCLVVSGPGLLHTFGGMANAQI-- 353 (1065)
Q Consensus 291 ~~---------~~~l~~al~~~~i~-----~i~~~~E~~A~~~A~g~ar~tg-kpgv~~~tsGpG~~N~~~av~eA~~-- 353 (1065)
.. ...+.+++++.|++ .+........++-+.---...+ +|-+++|.+..-+.-++.++.++-.
T Consensus 186 ~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~al~~~G~~v 265 (332)
T 2hsg_A 186 TLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVGTDEMALGVIHGAQDRGLNV 265 (332)
T ss_dssp CTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEECCSSHHHHHHHHHHHHHSSSCCSEEEESSHHHHHHHHHHHHHTTCCH
T ss_pred CcccCccHHHHHHHHHHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHcCCCCCeEEEECChHHHHHHHHHHHHcCCCC
Q ss_pred -cCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCC-EEEEecChhh
Q psy14416 354 -NCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG-VSYLDFPANL 427 (1065)
Q Consensus 354 -~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~G-PV~L~iP~Dv 427 (1065)
+.+.++-.-......... ..+-+++| +++++.+..-+.+.....+++. |.++.+|..+
T Consensus 266 P~disvvg~D~~~~~~~~~-p~lttv~~---------------~~~~~g~~a~~~l~~~i~~~~~~~~~~~~~~~l 325 (332)
T 2hsg_A 266 PNDLEIIGFDNTRLSTMVR-PQLTSVVQ---------------PMYDIGAVAMRLLTKYMNKETVDSSIVQLPHRI 325 (332)
T ss_dssp HHHCEEEEESCCGGGGSSS-SCCEEEEC---------------CHHHHHHHHHHHHHHHHTTCCSCCSCEEECCEE
T ss_pred CCCeEEEEECChHHHhccC-CceeEEEC---------------CHHHHHHHHHHHHHHHhcCCCCCCceEEECCEE
No 169
>2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP: c.69.1.14
Probab=24.33 E-value=3.3e+02 Score=27.16 Aligned_cols=35 Identities=14% Similarity=0.016 Sum_probs=27.7
Q ss_pred CCcEEEEEeCCcchhhhhHHHhhcccCCCcEEEEe
Q psy14416 70 KKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIG 104 (1065)
Q Consensus 70 g~~gv~~~t~GPG~~N~l~gla~A~~~~~Pll~Is 104 (1065)
.+|.|++++.+.|.......++.....+..++++-
T Consensus 61 ~~p~vv~~HG~~~~~~~~~~~~~~l~~~~~v~~~~ 95 (251)
T 2r8b_A 61 GAPLFVLLHGTGGDENQFFDFGARLLPQATILSPV 95 (251)
T ss_dssp TSCEEEEECCTTCCHHHHHHHHHHHSTTSEEEEEC
T ss_pred CCcEEEEEeCCCCCHhHHHHHHHhcCCCceEEEec
Confidence 46888888888888777778888877777787773
No 170
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=23.88 E-value=2.9e+02 Score=28.91 Aligned_cols=87 Identities=14% Similarity=0.069 Sum_probs=50.4
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCch--------hhhHHHhhcCCce-----EEEccCCchHHHHHHHHH------H
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPV--------IELAMACQQEGIH-----YIGMRNEQAACYAAQAIG------Y 325 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~--------~~l~~al~~~~i~-----~i~~~~E~~A~~~A~g~a------r 325 (1065)
....++...++.|.+.|-+++.-+-|... ..+.+++++.++. .+....+...++.+.--- +
T Consensus 114 D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 193 (303)
T 3kke_A 114 DDQKGGGIATEHLITLGHSRIAFISGTAIHDTAQRRKEGYLETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRGANLG 193 (303)
T ss_dssp CHHHHHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTT
T ss_pred CcHHHHHHHHHHHHHCCCCeEEEEeCCCcCccHHHHHHHHHHHHHHcCCCCCcceEEecCCChHHHHHHHHHhcchhhhc
Confidence 45677888999999999998877766322 2234456565543 223333333333322111 1
Q ss_pred HhCCCeEEEEeccccccccccccccc
Q psy14416 326 LTKKPGVCLVVSGPGLLHTFGGMANA 351 (1065)
Q Consensus 326 ~tgkpgv~~~tsGpG~~N~~~av~eA 351 (1065)
...+|-+++|.+..-+.-++.++.++
T Consensus 194 ~~~~~~ai~~~nd~~A~g~~~al~~~ 219 (303)
T 3kke_A 194 KPDGPTAVVVASVNAAVGALSTALRL 219 (303)
T ss_dssp STTSCSEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCCcEEEECCHHHHHHHHHHHHHc
Confidence 13468899998776555555555544
No 171
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=23.74 E-value=2.2e+02 Score=30.60 Aligned_cols=88 Identities=9% Similarity=-0.130 Sum_probs=48.9
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCc--h-------hhhHHHhhcCCce----EEE-ccCCchHHHHHH-HHHHHhCC
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIP--V-------IELAMACQQEGIH----YIG-MRNEQAACYAAQ-AIGYLTKK 329 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~--~-------~~l~~al~~~~i~----~i~-~~~E~~A~~~A~-g~ar~tgk 329 (1065)
.+..++...++.|.+.|.+++--+-|.. . ..+.+++++.++. .+. .......++-+. -+-....+
T Consensus 168 D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 247 (344)
T 3kjx_A 168 SHRRAGREMAQAILKAGYRRIGFMGTKMPLDYRARKRFEGFTEVLGKNGVEIEDREFYSGGSALAKGREMTQAMLERSPD 247 (344)
T ss_dssp CHHHHHHHHHHHHHHHTCCSCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCCSCEEECSSCCCHHHHHHHHHHHHHHSTT
T ss_pred CcHHHHHHHHHHHHHCCCCeEEEEecCcccCccHHHHHHHHHHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHhcCCC
Confidence 3456788899999999999876655532 1 1234455555543 221 122222232222 11122347
Q ss_pred CeEEEEecccccccccccccccc
Q psy14416 330 PGVCLVVSGPGLLHTFGGMANAQ 352 (1065)
Q Consensus 330 pgv~~~tsGpG~~N~~~av~eA~ 352 (1065)
|-+++|.+..-+.-++.++.++-
T Consensus 248 ~~ai~~~nd~~A~g~~~al~~~g 270 (344)
T 3kjx_A 248 LDFLYYSNDMIAAGGLLYLLEQG 270 (344)
T ss_dssp CCEEEESSHHHHHHHHHHHHHTT
T ss_pred CCEEEECCHHHHHHHHHHHHHcC
Confidence 89999988766665655555543
No 172
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=23.56 E-value=2.4e+02 Score=30.50 Aligned_cols=74 Identities=16% Similarity=0.271 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHHHHhhhcCCCEEEE
Q psy14416 487 AELKQASRLILEAK--APLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLL 564 (1065)
Q Consensus 487 ~~v~~~ae~L~~Ak--rPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~~~~al~~aDlVI~ 564 (1065)
+.+.++++.+...+ .-++++|. ...+.+.++++|++.|.+.+..-.-.|.+..... ..+..+|+||+
T Consensus 56 ~~L~~A~~~i~~i~~~~~ILfVgT---k~~aq~~V~k~A~~~g~~yv~~RWlgG~LTN~~t--------~~f~~PdlliV 124 (295)
T 2zkq_b 56 EKLLLAARAIVAIENPADVSVISS---RNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQ--------AAFREPRLLVV 124 (295)
T ss_dssp HHHHHHHHHHHHSSCGGGEEEEEC---SHHHHHHHHHHHHHHCCEEEESSCCCC-CCCTTC--------SSCCCCSEEEE
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeC---cHHHHHHHHHHHHHhCCceecceEecccccCccc--------ccccCCCeEEE
Confidence 34555566665443 33788885 2355678999999999998876554455533211 13578999999
Q ss_pred eCCcccc
Q psy14416 565 LGARLNW 571 (1065)
Q Consensus 565 iG~~~~~ 571 (1065)
+..+-+.
T Consensus 125 ~Dp~~e~ 131 (295)
T 2zkq_b 125 TDPRADH 131 (295)
T ss_dssp SCTTTTH
T ss_pred eCCCcch
Confidence 9876553
No 173
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=22.95 E-value=86 Score=33.89 Aligned_cols=145 Identities=12% Similarity=-0.010 Sum_probs=71.0
Q ss_pred CCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeeccccchhhhhhhhhccCCCcccccCccHHHHHHHHHHh
Q psy14416 200 GKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKF 279 (1065)
Q Consensus 200 ~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~ 279 (1065)
+++|..++|-.+...+......+.++++|++.+--... .+.. .. .+.++. .......+..+++.|.+
T Consensus 70 ~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~----~~~~-----~~-~~~~~~---~~~~~~~~~~~~~~l~~ 136 (358)
T 3hut_A 70 DPRVVGVLGDFSSTVSMAAGSIYGKEGMPQLSPTAAHP----DYIK-----IS-PWQFRA---ITTPAFEGPNNAAWMIG 136 (358)
T ss_dssp CTTEEEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCG----GGTT-----SC-TTEEES---SCCGGGHHHHHHHHHHH
T ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHCCCcEEecCCCCc----cccc-----CC-CeEEEe---cCChHHHHHHHHHHHHH
Confidence 57888888865443333445566788999654311111 0100 00 111221 12345678889999999
Q ss_pred cCceEEEeecCCch------hhhHHHhhcCCceEEEc--cCCchHHHHHHHHHH-HhCCCeEEEEeccc-cccccccccc
Q psy14416 280 QGIEYVFGIVGIPV------IELAMACQQEGIHYIGM--RNEQAACYAAQAIGY-LTKKPGVCLVVSGP-GLLHTFGGMA 349 (1065)
Q Consensus 280 ~GV~~vfg~pG~~~------~~l~~al~~~~i~~i~~--~~E~~A~~~A~g~ar-~tgkpgv~~~tsGp-G~~N~~~av~ 349 (1065)
.|.+++..+-.... ..+..++++.|++++.. .......+.+ ...+ ...+|-++++.+.+ -+..++.++.
T Consensus 137 ~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~-~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~ 215 (358)
T 3hut_A 137 DGFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDD-VIDEIEDEAPQAIYLAMAYEDAAPFLRALR 215 (358)
T ss_dssp TTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHH-HHHHHHHHCCSEEEEESCHHHHHHHHHHHH
T ss_pred cCCCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCccHHH-HHHHHHhcCCCEEEEccCchHHHHHHHHHH
Confidence 99998877732111 12334456667765432 1111111111 1222 22356666665433 4444554444
Q ss_pred cccccCcceE
Q psy14416 350 NAQINCWPML 359 (1065)
Q Consensus 350 eA~~~~vPLl 359 (1065)
+.-. ++|++
T Consensus 216 ~~g~-~~p~~ 224 (358)
T 3hut_A 216 ARGS-ALPVY 224 (358)
T ss_dssp HTTC-CCCEE
T ss_pred HcCC-CCcEE
Confidence 4433 35543
No 174
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=22.57 E-value=1.2e+02 Score=29.80 Aligned_cols=100 Identities=15% Similarity=0.171 Sum_probs=55.4
Q ss_pred cHHHHHHHHHHhcCceEEEeecCCchhhhHHH--------hhcCCceEEEccCCchHH-----------HHHHHHHHHhC
Q psy14416 268 SANQVIAQALKFQGIEYVFGIVGIPVIELAMA--------CQQEGIHYIGMRNEQAAC-----------YAAQAIGYLTK 328 (1065)
Q Consensus 268 ~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~a--------l~~~~i~~i~~~~E~~A~-----------~~A~g~ar~tg 328 (1065)
..++.+++.|.+.+-=++||+-++.......+ +.+.+++++....+.+-. .+..-+...-+
T Consensus 30 ~~~~~i~~~l~~~~~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (188)
T 1tk9_A 30 KVGELLCECLKKGGKILICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQVEALGN 109 (188)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHSCSSSCCCCCCEEESSCCHHHHHHHHHHTCGGGHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHHhhhhccCCCCCceEeccCCchhHhhhhcCCCHHHHHHHHHHHhCC
Confidence 34555666777788777888765544333222 122456665553233211 01111222123
Q ss_pred CCeEEEEecccc-ccccccccccccccCcceEeecCCCcc
Q psy14416 329 KPGVCLVVSGPG-LLHTFGGMANAQINCWPMLVIGGSCAQ 367 (1065)
Q Consensus 329 kpgv~~~tsGpG-~~N~~~av~eA~~~~vPLlvItg~~p~ 367 (1065)
+--++++.|-+| ..+.+.++..|...+.|+|.||+....
T Consensus 110 ~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s 149 (188)
T 1tk9_A 110 EKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGG 149 (188)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGGT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 334455555444 456777788899999999999987543
No 175
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=22.50 E-value=2.6e+02 Score=30.70 Aligned_cols=33 Identities=24% Similarity=0.123 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCceEEEeecCCchhhhHHHhh
Q psy14416 269 ANQVIAQALKFQGIEYVFGIVGIPVIELAMACQ 301 (1065)
Q Consensus 269 ~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~ 301 (1065)
..+.+++.|+++||+.+|.+-|..+..-...|.
T Consensus 81 ~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~ 113 (319)
T 1zxx_A 81 GQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLT 113 (319)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCchHHHHHHHHH
Confidence 678899999999999999999987766554443
No 176
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=22.49 E-value=53 Score=29.98 Aligned_cols=59 Identities=20% Similarity=0.343 Sum_probs=40.4
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHHHHhhhcCCCEEEEeCCcccc
Q psy14416 500 KAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNW 571 (1065)
Q Consensus 500 krPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~ 571 (1065)
+|.++++|.|...+-..+.+++.++..|+++-....+-+-+ ...+.++|+++ +|..+.+
T Consensus 4 kkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~~------------~~~~~~~Dvil-~~pqv~~ 62 (106)
T 1e2b_A 4 KHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLA------------GEKGQNADVVL-LGPQIAY 62 (106)
T ss_dssp EEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECSSST------------THHHHHCSEEE-ECTTSGG
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecHHHH------------HhhccCCCEEE-Eccchhh
Confidence 46889999999888778899999999999974332221111 11246789665 6776653
No 177
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=22.47 E-value=1.6e+02 Score=29.00 Aligned_cols=100 Identities=13% Similarity=0.050 Sum_probs=59.7
Q ss_pred cHHHHHHHHHHhcCceEEEeecCCchhhhH--HHhh------cCCceEEEccCC-----------chHHHHHHHHHHHhC
Q psy14416 268 SANQVIAQALKFQGIEYVFGIVGIPVIELA--MACQ------QEGIHYIGMRNE-----------QAACYAAQAIGYLTK 328 (1065)
Q Consensus 268 ~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~--~al~------~~~i~~i~~~~E-----------~~A~~~A~g~ar~tg 328 (1065)
...+.+++.|.+.+-=++||+-++...... ..+. +.|++.+...++ .....++.-....-+
T Consensus 29 ~~~~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~~~~ 108 (196)
T 2yva_A 29 RAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGH 108 (196)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHTCSSSCCCCCCEEESSCCHHHHHHHTTSTTGGGHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCEEEEEeCchhhHHHHHHHHHHhccccccCCCCceEeecCchHHHHHHhcCCCHHHHHHHHHHhcCC
Confidence 466788999999888788888665443322 2233 456777665422 111111111111122
Q ss_pred CCeEEEEecccc-ccccccccccccccCcceEeecCCCcc
Q psy14416 329 KPGVCLVVSGPG-LLHTFGGMANAQINCWPMLVIGGSCAQ 367 (1065)
Q Consensus 329 kpgv~~~tsGpG-~~N~~~av~eA~~~~vPLlvItg~~p~ 367 (1065)
+--++++.|-+| ..+.+.++..|...+.++|.||+....
T Consensus 109 ~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s 148 (196)
T 2yva_A 109 AGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGG 148 (196)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 334455555544 567778888899999999999987643
No 178
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=22.32 E-value=1.2e+02 Score=30.72 Aligned_cols=101 Identities=16% Similarity=0.185 Sum_probs=61.1
Q ss_pred cHHHHHHHHHHhcCceEEEeecCCchhhhHHH--hh------cCCceEEEccCCchHHHHHH------------HHHHHh
Q psy14416 268 SANQVIAQALKFQGIEYVFGIVGIPVIELAMA--CQ------QEGIHYIGMRNEQAACYAAQ------------AIGYLT 327 (1065)
Q Consensus 268 ~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~a--l~------~~~i~~i~~~~E~~A~~~A~------------g~ar~t 327 (1065)
..++.++++|++.|-=++||+-++.......+ |. +.+++.+....+.+. ..|. -+...-
T Consensus 34 ~a~~~i~~al~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~r~g~~~~~~~~d~~~-~~a~~~d~~~~~~~~~~l~~~~ 112 (201)
T 3trj_A 34 QAAKAMVSCLENGGKVLVCGNGSSGVIAQHFTSKLLNHFEMERPPLPAIALTGDVAT-ITAVGNHYGFSQIFAKQVAALG 112 (201)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHC-------CCCEEETTSCHHH-HHHHHHHTCGGGTTHHHHHHHC
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhcCccCCCCCCCceEEccCChHH-HHHhccCCCHHHHHHHHHHhhC
Confidence 56677888888889999999876655433322 33 357777665433321 1111 111112
Q ss_pred CCCeEEEEecccc-ccccccccccccccCcceEeecCCCccCC
Q psy14416 328 KKPGVCLVVSGPG-LLHTFGGMANAQINCWPMLVIGGSCAQDH 369 (1065)
Q Consensus 328 gkpgv~~~tsGpG-~~N~~~av~eA~~~~vPLlvItg~~p~~~ 369 (1065)
++--++++.|..| ..+.+.++..|...+.|+|.||+.....+
T Consensus 113 ~~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~l 155 (201)
T 3trj_A 113 NEDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGGAL 155 (201)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTCCGG
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCHH
Confidence 3334445545444 56677888889999999999998765543
No 179
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=22.01 E-value=2.9e+02 Score=27.09 Aligned_cols=99 Identities=13% Similarity=0.065 Sum_probs=56.9
Q ss_pred cHHHHHHHHHHhCCCcEEEEeCCCChHHHH--HHHH------hCCCeEEEecChhhH----------H-HHHHHHHHhcC
Q psy14416 10 SANQVIAQALKFQGIEYVFGIVGIPVIELA--MACQ------QEGIHYIGMRNEQAA----------C-YAAQAIGYLTK 70 (1065)
Q Consensus 10 t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~--~al~------~~~i~~v~~rhE~~A----------~-~mA~gyar~tg 70 (1065)
...+.+++.|.+.+-=++||.-++...... ..|. +.+++.+....+.+. . ..+.-....-+
T Consensus 29 ~~~~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~~~~ 108 (196)
T 2yva_A 29 RAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGH 108 (196)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHTCSSSCCCCCCEEESSCCHHHHHHHTTSTTGGGHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCEEEEEeCchhhHHHHHHHHHHhccccccCCCCceEeecCchHHHHHHhcCCCHHHHHHHHHHhcCC
Confidence 445778888988876677887554433222 2233 345666655422111 0 00000011123
Q ss_pred CcEEEEEeCCcc-hhhhhHHHhhcccCCCcEEEEecCCC
Q psy14416 71 KPGVCLVVSGPG-LLHTFGGMANAQINCWPMLVIGGSCA 108 (1065)
Q Consensus 71 ~~gv~~~t~GPG-~~N~l~gla~A~~~~~Pll~Isg~~~ 108 (1065)
+--++++.|-.| ..+.+..+..|+..+.++|.||+...
T Consensus 109 ~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~ 147 (196)
T 2yva_A 109 AGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDG 147 (196)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 334555555555 78888999999999999999996543
No 180
>1hi9_A Dciaa, dipeptide transport protein DPPA; hydrolase (protease), protease, D-aminopeptidase, decamer, SELF-compartmentalizing; 2.4A {Bacillus subtilis} SCOP: c.99.1.1
Probab=21.57 E-value=15 Score=39.58 Aligned_cols=73 Identities=12% Similarity=0.137 Sum_probs=0.0
Q ss_pred ccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCC--------CCEEEEe
Q psy14416 351 AQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGK--------PGVSYLD 422 (1065)
Q Consensus 351 A~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~--------~GPV~L~ 422 (1065)
|-.-++||+++|||.-....-..-+-.+.-+..-+.+.+++....+|+.+.+.|+++.+.|.... ++|+.+.
T Consensus 141 Ag~~gVPV~lvsGDd~~~~e~~~~~P~~~tv~vK~~~gr~aa~~~~p~~a~~~I~~aa~~Al~~~~~~~p~~~~~p~~l~ 220 (274)
T 1hi9_A 141 AGYYDVPVLMVAGDDRAAKEAEELIPNVTTAAVKQTISRSAVKCLSPAKRGRLLTEKTAFALQNKDKVKPLTPPDRPVLS 220 (274)
T ss_dssp HHHTTCCEEEEEEEHHHHHHHHTTSTTCEEEEEEEEEETTEEEECCHHHHHHHHHHHHHHHHHSGGGCCCCCCCSSCEEE
T ss_pred HhhcCCCEEEEecCHHHHHHHHHhCCCCeEEEEeecccccccccCCHHHHHHHHHHHHHHHHhhccCCCCcCCCCCEEEE
Q ss_pred c
Q psy14416 423 F 423 (1065)
Q Consensus 423 i 423 (1065)
|
T Consensus 221 v 221 (274)
T 1hi9_A 221 I 221 (274)
T ss_dssp E
T ss_pred E
No 181
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=21.26 E-value=1.9e+02 Score=28.53 Aligned_cols=37 Identities=14% Similarity=0.119 Sum_probs=27.7
Q ss_pred CcEEEEEeCCcc-hhhhhHHHhhcccCCCcEEEEecCC
Q psy14416 71 KPGVCLVVSGPG-LLHTFGGMANAQINCWPMLVIGGSC 107 (1065)
Q Consensus 71 ~~gv~~~t~GPG-~~N~l~gla~A~~~~~Pll~Isg~~ 107 (1065)
+--++++.|-.| ..+.+..+..|+..+.|+|.||+..
T Consensus 116 ~~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~ 153 (198)
T 2xbl_A 116 EGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNR 153 (198)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCC
Confidence 334555555555 6778888888999999999999654
No 182
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*
Probab=21.03 E-value=1.2e+02 Score=37.06 Aligned_cols=128 Identities=12% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCC-----CcEEEEccCCCchhHHHHHHHHHhh-cCCCEEecCC---------------CCCCCCCCC
Q psy14416 486 IAELKQASRLILEAK-----APLVIIGKGAAYSQAETELLSFVNS-FNLPFLPTPM---------------GKGVVPDAH 544 (1065)
Q Consensus 486 ~~~v~~~ae~L~~Ak-----rPvIlvG~g~~~~~a~~~L~~LAe~-lg~PV~tt~~---------------gkg~v~~~h 544 (1065)
+++++.+++.|++.+ .-+.+.|++.........+.+|++. +|.+.+.... |.+......
T Consensus 82 deAl~~ia~~l~~~~~~~G~~~i~~~~~~~~~~e~~~~~~~~~~~~~gs~n~~~~~~~c~~~~~~~~~~~~G~~~~~~~~ 161 (723)
T 2nap_A 82 DEALDLMASRFRSSIDMYGPNSVAWYGSGQCLTEESYVANKIFKGGFGTNNVDGNPRLCMASAVGGYVTSFGKDEPMGTY 161 (723)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGEEEEECTTSCHHHHHHHHHHHHHTSCCCCEEEGGGGTTHHHHHHHHHHHSSCSCSSCG
T ss_pred HHHHHHHHHHHHHHHHhhCCCeEEEEeCCcccchhhHHHHHHHHHhcCCCceeCCCccccchHhHHHHhccCCCCCCCCh
Q ss_pred cccccHHHHhhhcCCCEEEEeCCccccccccCCCccccC-----CCeEEEecCChhhcccccccceEEE-cCHHHHHHHH
Q psy14416 545 PNCVSAARTHALQNADLVLLLGARLNWILHFGRAPRFKS-----NVKIIQVDLNAEELHNSVQAAVAIQ-SDVRLTVQQL 618 (1065)
Q Consensus 545 pl~lg~~~~~al~~aDlVI~iG~~~~~~~~~g~~~~~~~-----~~~iI~Vd~d~~~~~~~~~~~~~I~-~D~~~~L~~L 618 (1065)
+ -+.++|+||.+|+.+.......+...... ..++|.||+........-...+.+. +.-.+++.+|
T Consensus 162 ~---------d~~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~~g~klividP~~t~ta~~Ad~~l~irPGtD~al~~al 232 (723)
T 2nap_A 162 A---------DIDQATCFFIIGSNTSEAHPVLFRRIARRKQVEPGVKIIVADPRRTNTSRIADMHVAFRPGTDLAFMHSM 232 (723)
T ss_dssp G---------GGGTCSEEEEESCCHHHHSHHHHHHHHHHHHHCTTCEEEEECSBCCGGGGGCSEEECCCTTTHHHHHHHH
T ss_pred h---------hHhHCCEEEEEcCChhHhCcHHHHHHHHHHhhCCCCEEEEEcCcCCchhhhhCeeeecCCCcHHHHHHHH
Q ss_pred HHhh
Q psy14416 619 KQML 622 (1065)
Q Consensus 619 ~~~l 622 (1065)
...+
T Consensus 233 ~~~i 236 (723)
T 2nap_A 233 AWVI 236 (723)
T ss_dssp HHHH
T ss_pred HHHH
No 183
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=20.99 E-value=1.6e+02 Score=30.95 Aligned_cols=175 Identities=10% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHHHhhhcCCCEEEEEEcCCeeeeccccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCC-----
Q psy14416 217 MELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGI----- 291 (1065)
Q Consensus 217 ~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~----- 291 (1065)
..+..+.+.++| +|++|+. ...............++...++.|.+.|-+++.-+-|.
T Consensus 97 ~~~~~l~~~~iP--vV~i~~~----------------~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~ 158 (305)
T 3huu_A 97 PIEHLLNEFKVP--YLIVGKS----------------LNYENIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAV 158 (305)
T ss_dssp HHHHHHHHTTCC--EEEESCC----------------CSSTTCCEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCBHH
T ss_pred HHHHHHHHcCCC--EEEECCC----------------CcccCCcEEEeCHHHHHHHHHHHHHHCCCCeEEEEcCCcccch
Q ss_pred ---chhhhHHHhhcCCceEE-EccCCchHHHHHHHHHHH----hCCCeEEEEeccccccccccccccccc---cCcceEe
Q psy14416 292 ---PVIELAMACQQEGIHYI-GMRNEQAACYAAQAIGYL----TKKPGVCLVVSGPGLLHTFGGMANAQI---NCWPMLV 360 (1065)
Q Consensus 292 ---~~~~l~~al~~~~i~~i-~~~~E~~A~~~A~g~ar~----tgkpgv~~~tsGpG~~N~~~av~eA~~---~~vPLlv 360 (1065)
+...+.+++++.++.+. ....+... ......+. ..+|-+++|.+..-+.-++.++.++-. +.+.|+-
T Consensus 159 ~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~g~~vP~di~vig 236 (305)
T 3huu_A 159 TEDRSVGFKQYCDDVKISNDCVVIKSMND--LRDFIKQYCIDASHMPSVIITSDVMLNMQLLNVLYEYQLRIPEDIQTAT 236 (305)
T ss_dssp HHHHHHHHHHHHHHTTCCCCEEEECSHHH--HHHHC--------CCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred hHHHHHHHHHHHHHcCCCcccEEecCcHH--HHHHHHHhhhcCCCCCCEEEECChHHHHHHHHHHHHcCCCCCcceEEEE
Q ss_pred ecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCC-CEEEEecChhh
Q psy14416 361 IGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKP-GVSYLDFPANL 427 (1065)
Q Consensus 361 Itg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~-GPV~L~iP~Dv 427 (1065)
+ .+.+....-...+-+++| +++++.+..-+.+.....++. .|.++.+|..+
T Consensus 237 ~-D~~~~~~~~~p~lttv~~---------------~~~~~g~~av~~l~~~i~~~~~~~~~~~~~~~l 288 (305)
T 3huu_A 237 F-NTSFLTENATPSQTSVNI---------------NPDVLGFTAGNTIIDVLRNETISFREKLISTQI 288 (305)
T ss_dssp E-SCSHHHHTSSSCCEEEEC---------------CHHHHHHHHHHHHHHHHCC----CCEEECCCEE
T ss_pred E-CCcchhhhcCCcceEEec---------------CHHHHHHHHHHHHHHHhhCCCCCCCcEEECcEE
No 184
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=20.92 E-value=2.8e+02 Score=29.63 Aligned_cols=88 Identities=11% Similarity=-0.017 Sum_probs=50.9
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCch--------hhhHHHhhcCCceE----E-EccCCchHHHHHHH-HHHHhCCC
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPV--------IELAMACQQEGIHY----I-GMRNEQAACYAAQA-IGYLTKKP 330 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~--------~~l~~al~~~~i~~----i-~~~~E~~A~~~A~g-~ar~tgkp 330 (1065)
.+..++...++.|.+.|.+++.-+-|... ..+.+++++.++++ + ........++-+.- +-....+|
T Consensus 164 D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 243 (338)
T 3dbi_A 164 DHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKF 243 (338)
T ss_dssp CHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCC
T ss_pred ChHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCCCCcceEEeCCCCHHHHHHHHHHHHcCCCCC
Confidence 35567888999999999998877766422 22444566666442 2 22223333332221 11124568
Q ss_pred eEEEEecccccccccccccccc
Q psy14416 331 GVCLVVSGPGLLHTFGGMANAQ 352 (1065)
Q Consensus 331 gv~~~tsGpG~~N~~~av~eA~ 352 (1065)
-+++|.+..-+.-++.++.++-
T Consensus 244 ~ai~~~nd~~A~g~~~al~~~G 265 (338)
T 3dbi_A 244 SALVASNDDMAIGAMKALHERG 265 (338)
T ss_dssp SEEEESSHHHHHHHHHHHHHTT
T ss_pred eEEEECChHHHHHHHHHHHHcC
Confidence 8999987765555555555543
No 185
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=20.27 E-value=3.2e+02 Score=28.35 Aligned_cols=86 Identities=14% Similarity=0.100 Sum_probs=46.9
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCc--------hhhhHHHhhcCCce--EEEc-cCCchHHHHHHHHHHHh--CCCe
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIP--------VIELAMACQQEGIH--YIGM-RNEQAACYAAQAIGYLT--KKPG 331 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~--------~~~l~~al~~~~i~--~i~~-~~E~~A~~~A~g~ar~t--gkpg 331 (1065)
....++..+++.|.+.|-+++.-+.|.. ...+.+++++.+++ ++.. ......++-+. -..+. .+|-
T Consensus 121 d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~ 199 (293)
T 2iks_A 121 ADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPREVHFLYANSYEREAAAQLF-EKWLETHPMPQ 199 (293)
T ss_dssp CHHHHHHHHHHHHHTSCCSSEEEEEECTTSHHHHHHHHHHHHHHTTCCCCEEEEEESSSCHHHHHHHH-HHHTTTSCCCS
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEEecCcccccHHHHHHHHHHHHHHcCCCccEEEcCCCChhhHHHHH-HHHHhcCCCCC
Confidence 3456778899999999988776555432 12234455666653 2322 22233333221 11122 3588
Q ss_pred EEEEeccccccccccccccc
Q psy14416 332 VCLVVSGPGLLHTFGGMANA 351 (1065)
Q Consensus 332 v~~~tsGpG~~N~~~av~eA 351 (1065)
+++|.+..-+..++.++.++
T Consensus 200 ai~~~~d~~a~g~~~al~~~ 219 (293)
T 2iks_A 200 ALFTTSFALLQGVMDVTLRR 219 (293)
T ss_dssp EEEESSHHHHHHHHHHHHHH
T ss_pred EEEECChHHHHHHHHHHHHc
Confidence 88888766555455555544
No 186
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=20.04 E-value=3.8e+02 Score=27.59 Aligned_cols=89 Identities=8% Similarity=0.016 Sum_probs=49.8
Q ss_pred CccHHHHHHHHHHh-c-Cce-----EEEeecCCc--------hhhhHHHhhcC-CceEEEc---cCCchHHHHHHH-HHH
Q psy14416 266 ELSANQVIAQALKF-Q-GIE-----YVFGIVGIP--------VIELAMACQQE-GIHYIGM---RNEQAACYAAQA-IGY 325 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~-~-GV~-----~vfg~pG~~--------~~~l~~al~~~-~i~~i~~---~~E~~A~~~A~g-~ar 325 (1065)
....+..+++.|.+ + |-+ ++.-+-|.. ...+.+++++. ++++... ......++-+.- +-+
T Consensus 112 ~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~ 191 (293)
T 3l6u_A 112 NQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTTNERHRGFLKGIENEPTLSIVDSVSGNYDPVTSERVMRQVID 191 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchHHHHHHHHHHHHHhCCCcEEeeeccCCCCHHHHHHHHHHHHH
Confidence 44567777888887 4 766 665554432 22344556666 8776532 222223322211 111
Q ss_pred HhCCCeEEEEecccccccccccccccccc
Q psy14416 326 LTKKPGVCLVVSGPGLLHTFGGMANAQIN 354 (1065)
Q Consensus 326 ~tgkpgv~~~tsGpG~~N~~~av~eA~~~ 354 (1065)
...+|-+++|.+..-+.-++.++.++-..
T Consensus 192 ~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 220 (293)
T 3l6u_A 192 SGIPFDAVYCHNDDIAMGVLEALKKAKIS 220 (293)
T ss_dssp TTCCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred hCCCCCEEEECCchHHHHHHHHHHhCCCC
Confidence 23568889998877666666666666554
No 187
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=20.02 E-value=73 Score=29.25 Aligned_cols=59 Identities=14% Similarity=0.136 Sum_probs=39.9
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHHHHhhhcCCCEEEEeCCccc
Q psy14416 499 AKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLN 570 (1065)
Q Consensus 499 AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~ 570 (1065)
..|.+++++.|...+-..+.+++.|++.|+++-....+-+-+. ..+.+.|+||. |....
T Consensus 6 ~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~~~------------~~~~~~DvvLL-gPQV~ 64 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHY------------DIMGVYDLIIL-APQVR 64 (108)
T ss_dssp CEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTSCT------------TTGGGCSEEEE-CGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHHHH------------hhccCCCEEEE-ChHHH
Confidence 3467888998876666788999999999999765432212111 23467898654 76554
Done!