RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14416
(1065 letters)
>gnl|CDD|236433 PRK09259, PRK09259, putative oxalyl-CoA decarboxylase; Validated.
Length = 569
Score = 308 bits (792), Expect = 2e-93
Identities = 145/383 (37%), Positives = 216/383 (56%), Gaps = 43/383 (11%)
Query: 271 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKP 330
++ ALK GI+ ++G+VGIP+ +LA Q EGI YIG R+EQ+A AA A G+LT+KP
Sbjct: 14 HLVIDALKLNGIDTIYGVVGIPITDLARLAQAEGIRYIGFRHEQSAGNAAAAAGFLTQKP 73
Query: 331 GVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGI----GGFQECPQVELARP 386
GVCL VS PG L+ +ANA NC+PM++I GS + E + G ++E Q+ A+P
Sbjct: 74 GVCLTVSAPGFLNGLTALANATTNCFPMIMISGS--SEREIVDLQQGDYEELDQLNAAKP 131
Query: 387 YCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEP 446
+CK + R IG V +A+R + G+PG YLD PA +LAQ ++
Sbjct: 132 FCKAAFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAKVLAQTMDADE---------- 181
Query: 447 TLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPW-PGIAELKQASRLILEAKAPLVI 505
A LV KV++P P + +A L+ +AK PL+I
Sbjct: 182 -------------------ALTSLV---KVVDPAPAQLPAPEAVDRALDLLKKAKRPLII 219
Query: 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLL 565
+GKGAAY+QA+ ++ FV +PFLP M KG++PD HP +AAR+ AL NAD+VLL+
Sbjct: 220 LGKGAAYAQADEQIREFVEKTGIPFLPMSMAKGLLPDTHPQSAAAARSLALANADVVLLV 279
Query: 566 GARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHT 625
GARLNW+L G+ + ++ K IQ+D+ +E+ ++ A + D+ +Q L L+
Sbjct: 280 GARLNWLLSHGKGKTWGADKKFIQIDIEPQEIDSNRPIAAPVVGDIGSVMQAL---LAGL 336
Query: 626 QRNWSFSATSPWWQELKLKCQTN 648
++N F A + W L + + N
Sbjct: 337 KQNT-FKAPAEWLDALAERKEKN 358
Score = 147 bits (373), Expect = 6e-37
Identities = 67/151 (44%), Positives = 96/151 (63%), Gaps = 6/151 (3%)
Query: 13 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKP 72
++ ALK GI+ ++G+VGIP+ +LA Q EGI YIG R+EQ+A AA A G+LT+KP
Sbjct: 14 HLVIDALKLNGIDTIYGVVGIPITDLARLAQAEGIRYIGFRHEQSAGNAAAAAGFLTQKP 73
Query: 73 GVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGI----GGFQECPQVELARP 128
GVCL VS PG L+ +ANA NC+PM++I GS + E + G ++E Q+ A+P
Sbjct: 74 GVCLTVSAPGFLNGLTALANATTNCFPMIMISGS--SEREIVDLQQGDYEELDQLNAAKP 131
Query: 129 YCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
+CK + R IG V +A+R + G+PG
Sbjct: 132 FCKAAFRVNRAEDIGIGVARAIRTAVSGRPG 162
Score = 127 bits (321), Expect = 2e-30
Identities = 49/87 (56%), Positives = 63/87 (72%), Gaps = 5/87 (5%)
Query: 159 GRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGME 218
R+++ PRHRLD GT+G MG+G+G+A+AAA+ GK VV ++GDSAFGFSGME
Sbjct: 405 ARNIIDMYKPRHRLDCGTWGVMGIGMGYAIAAAV-----ETGKPVVAIEGDSAFGFSGME 459
Query: 219 LETLVRYRLPVILVIVNNNGIYGGFDE 245
+ET+ RY LPV +VI NN GIY G D
Sbjct: 460 VETICRYNLPVTVVIFNNGGIYRGDDV 486
Score = 73.1 bits (180), Expect = 4e-13
Identities = 39/103 (37%), Positives = 58/103 (56%), Gaps = 14/103 (13%)
Query: 952 SG-EVTTV----LPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEK 1006
SG EV T+ LPV +VI NN GIY G D+ + + PT L RY+K
Sbjct: 456 SGMEVETICRYNLPVTVVIFNNGGIYRG-DDVNLSGAGDPS-------PTVLVHHARYDK 507
Query: 1007 MMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSA 1049
MM FG GY TT +++ A+ + + + +P+LIN++I+P+A
Sbjct: 508 MMEAFGGVGYNVTTPDELRHALTEAIA-SGKPTLINVVIDPAA 549
Score = 35.0 bits (81), Expect = 0.27
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
Query: 680 SG-EVTTV----LPVILVIVNNNGIYGGFDET 706
SG EV T+ LPV +VI NN GIY G D
Sbjct: 456 SGMEVETICRYNLPVTVVIFNNGGIYRGDDVN 487
Score = 35.0 bits (81), Expect = 0.27
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
Query: 714 SG-EVTTV----LPVILVIVNNNGIYGGFDET 740
SG EV T+ LPV +VI NN GIY G D
Sbjct: 456 SGMEVETICRYNLPVTVVIFNNGGIYRGDDVN 487
Score = 35.0 bits (81), Expect = 0.27
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
Query: 748 SG-EVTTV----LPVILVIVNNNGIYGGFDET 774
SG EV T+ LPV +VI NN GIY G D
Sbjct: 456 SGMEVETICRYNLPVTVVIFNNGGIYRGDDVN 487
Score = 35.0 bits (81), Expect = 0.27
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
Query: 782 SG-EVTTV----LPVILVIVNNNGIYGGFDET 808
SG EV T+ LPV +VI NN GIY G D
Sbjct: 456 SGMEVETICRYNLPVTVVIFNNGGIYRGDDVN 487
Score = 35.0 bits (81), Expect = 0.27
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
Query: 816 SG-EVTTV----LPVILVIVNNNGIYGGFDET 842
SG EV T+ LPV +VI NN GIY G D
Sbjct: 456 SGMEVETICRYNLPVTVVIFNNGGIYRGDDVN 487
Score = 35.0 bits (81), Expect = 0.27
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
Query: 850 SG-EVTTV----LPVILVIVNNNGIYGGFDET 876
SG EV T+ LPV +VI NN GIY G D
Sbjct: 456 SGMEVETICRYNLPVTVVIFNNGGIYRGDDVN 487
Score = 35.0 bits (81), Expect = 0.27
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
Query: 884 SG-EVTTV----LPVILVIVNNNGIYGGFDET 910
SG EV T+ LPV +VI NN GIY G D
Sbjct: 456 SGMEVETICRYNLPVTVVIFNNGGIYRGDDVN 487
Score = 34.6 bits (80), Expect = 0.32
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 652 KLPVILVIVNNNGIYGGFDET 672
LPV +VI NN GIY G D
Sbjct: 467 NLPVTVVIFNNGGIYRGDDVN 487
>gnl|CDD|132298 TIGR03254, oxalate_oxc, oxalyl-CoA decarboxylase. In a number of
bacteria, including Oxalobacter formigenes from the
human gut, a two-gene operon of oxc (oxalyl-CoA
decarboxylase) and frc (formyl-CoA transferase) encodes
a system for degrading and therefore detoxifying
oxalate. Members of this family are the thiamine
pyrophosphate (TPP)-containing enzyme oxalyl-CoA
decarboxylase [Cellular processes, Detoxification].
Length = 554
Score = 295 bits (757), Expect = 1e-88
Identities = 167/509 (32%), Positives = 248/509 (48%), Gaps = 80/509 (15%)
Query: 272 VIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPG 331
++ ALK GI ++G+VGIPV +LA Q +G+ YIG R+EQ+A YAA A G+LT+KPG
Sbjct: 8 LVIDALKLNGINTIYGVVGIPVTDLARLAQAKGMRYIGFRHEQSAGYAAAAAGFLTQKPG 67
Query: 332 VCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGI----GGFQECPQVELARPY 387
VCL VS PG L+ +ANA NC+PM++I GS + + G ++E Q+ A+P+
Sbjct: 68 VCLTVSAPGFLNGLTALANATTNCFPMIMISGS--SERHIVDLQQGDYEEMDQLAAAKPF 125
Query: 388 CKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRIN-QSALVPTPKVLEP 446
K + R IG + +A+R + G+PG YLD PA +L Q + + A KV++P
Sbjct: 126 AKAAYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAAVLGQTMEAEKAKKTLVKVVDP 185
Query: 447 TLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVII 506
AP + P + +A L+ +AK PL+++
Sbjct: 186 ---------------------APKQL-----------PSPDSVDRAVELLKDAKRPLILL 213
Query: 507 GKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLLG 566
GKGAAY+QA+ E+ FV +PFLP M KG++PD HP +AAR+ AL AD+V+L+G
Sbjct: 214 GKGAAYAQADEEIREFVEKTGIPFLPMSMAKGLLPDTHPQSAAAARSFALAEADVVMLVG 273
Query: 567 ARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQ 626
ARLNW+L G+ + + K IQVD+ E+ ++ A + D+ VQ +LS +
Sbjct: 274 ARLNWLLSHGKGKLWGEDAKFIQVDIEPTEMDSNRPIAAPVVGDIGSVVQ---ALLSAAK 330
Query: 627 RNWSFSATSPWWQELKLKCQTNRQVKLPVILVIVNNNGIYGGFD-------ETTYASIVE 679
+ W +K K + N + + +G + + +V
Sbjct: 331 NGG-VKPPADWRNAIKTKSEKNVAKMAERLSASESPMNYHGALEAIRDVLKDNPDIYLVN 389
Query: 680 SGEVTTVL---------PVILVIVNNNGIYGGFDETTYASIVESG--------------- 715
G T L P + V G+ G A+ VE+G
Sbjct: 390 EGANTLDLARNVIDMYKPRHRLDVGTWGVMGIGMGYAIAAAVETGKPVVALEGDSAFGFS 449
Query: 716 --EVTTV----LPVILVIVNNNGIYGGFD 738
EV T+ LPV +VI NN GIY G D
Sbjct: 450 GMEVETICRYNLPVCVVIFNNGGIYRGDD 478
Score = 137 bits (346), Expect = 1e-33
Identities = 64/150 (42%), Positives = 94/150 (62%), Gaps = 6/150 (4%)
Query: 14 VIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPG 73
++ ALK GI ++G+VGIPV +LA Q +G+ YIG R+EQ+A YAA A G+LT+KPG
Sbjct: 8 LVIDALKLNGINTIYGVVGIPVTDLARLAQAKGMRYIGFRHEQSAGYAAAAAGFLTQKPG 67
Query: 74 VCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGI----GGFQECPQVELARPY 129
VCL VS PG L+ +ANA NC+PM++I GS + + G ++E Q+ A+P+
Sbjct: 68 VCLTVSAPGFLNGLTALANATTNCFPMIMISGS--SERHIVDLQQGDYEEMDQLAAAKPF 125
Query: 130 CKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
K + R IG + +A+R + G+PG
Sbjct: 126 AKAAYRVLRAEDIGIGIARAIRTAVSGRPG 155
Score = 114 bits (288), Expect = 2e-26
Identities = 49/86 (56%), Positives = 63/86 (73%), Gaps = 5/86 (5%)
Query: 159 GRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGME 218
R+++ PRHRLD GT+G MG+G+G+A+AAA+ GK VV ++GDSAFGFSGME
Sbjct: 398 ARNVIDMYKPRHRLDVGTWGVMGIGMGYAIAAAV-----ETGKPVVALEGDSAFGFSGME 452
Query: 219 LETLVRYRLPVILVIVNNNGIYGGFD 244
+ET+ RY LPV +VI NN GIY G D
Sbjct: 453 VETICRYNLPVCVVIFNNGGIYRGDD 478
Score = 72.9 bits (179), Expect = 4e-13
Identities = 42/101 (41%), Positives = 54/101 (53%), Gaps = 16/101 (15%)
Query: 954 EVTTV----LPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSP-PTSLGPSLRYEKMM 1008
EV T+ LPV +VI NN GIY G D V P PT L RY+KMM
Sbjct: 452 EVETICRYNLPVCVVIFNNGGIYRGDDV----------NVVGADPAPTVLVHGARYDKMM 501
Query: 1009 AVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSA 1049
FG GY TT ++K A+ + L + +P+LIN +I+PSA
Sbjct: 502 KAFGGVGYNVTTPDELKAALNEALA-SGKPTLINAVIDPSA 541
Score = 33.3 bits (76), Expect = 0.72
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
Query: 784 EVTTV----LPVILVIVNNNGIYGGFD 806
EV T+ LPV +VI NN GIY G D
Sbjct: 452 EVETICRYNLPVCVVIFNNGGIYRGDD 478
Score = 33.3 bits (76), Expect = 0.72
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
Query: 818 EVTTV----LPVILVIVNNNGIYGGFD 840
EV T+ LPV +VI NN GIY G D
Sbjct: 452 EVETICRYNLPVCVVIFNNGGIYRGDD 478
Score = 33.3 bits (76), Expect = 0.72
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
Query: 852 EVTTV----LPVILVIVNNNGIYGGFD 874
EV T+ LPV +VI NN GIY G D
Sbjct: 452 EVETICRYNLPVCVVIFNNGGIYRGDD 478
Score = 33.3 bits (76), Expect = 0.72
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
Query: 886 EVTTV----LPVILVIVNNNGIYGGFD 908
EV T+ LPV +VI NN GIY G D
Sbjct: 452 EVETICRYNLPVCVVIFNNGGIYRGDD 478
>gnl|CDD|223107 COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes
[acetolactate synthase, pyruvate dehydrogenase
(cytochrome), glyoxylate carboligase, phosphonopyruvate
decarboxylase] [Amino acid transport and metabolism /
Coenzyme metabolism].
Length = 550
Score = 284 bits (728), Expect = 1e-84
Identities = 106/371 (28%), Positives = 165/371 (44%), Gaps = 43/371 (11%)
Query: 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY 325
++ + + +AL+ G++ VFGI G ++ L A GI +I +R+EQ A +AA
Sbjct: 1 MMTGAEALVEALEANGVDTVFGIPGGSILPLYDALYDSGIRHILVRHEQGAAFAADGYAR 60
Query: 326 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 385
T KPGVCLV SGPG + G+A+A ++ P+L I G G FQE QV L R
Sbjct: 61 ATGKPGVCLVTSGPGATNLLTGLADAYMDSVPLLAITGQVPTSLIGTDAFQEVDQVGLFR 120
Query: 386 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLE 445
P KY+ + I + V +A R++ G+PG +D P ++LA P P+
Sbjct: 121 PITKYNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDVLAAEAE----EPGPEPAI 176
Query: 446 PTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505
P + +++A+ L+ EAK P+++
Sbjct: 177 LPPYRPAPPPPEA------------------------------IRKAAELLAEAKRPVIL 206
Query: 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH-------ALQN 558
G G + A EL P + T MGKG VP+ HP + H AL+
Sbjct: 207 AGGGVRRAGASEELRELAEKLGAPVVTTLMGKGAVPEDHPLSLGMLGMHGTKAANEALEE 266
Query: 559 ADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQL 618
ADL+L +GAR + + F II +D++ E+ + V I D + T++ L
Sbjct: 267 ADLLLAVGARFDDRVTGYSG--FAPPAAIIHIDIDPAEIGKNYPVDVPIVGDAKATLEAL 324
Query: 619 KQMLSHTQRNW 629
+ L + W
Sbjct: 325 LEELKPERAAW 335
Score = 161 bits (410), Expect = 1e-41
Identities = 58/162 (35%), Positives = 89/162 (54%), Gaps = 2/162 (1%)
Query: 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY 67
++ + + +AL+ G++ VFGI G ++ L A GI +I +R+EQ A +AA
Sbjct: 1 MMTGAEALVEALEANGVDTVFGIPGGSILPLYDALYDSGIRHILVRHEQGAAFAADGYAR 60
Query: 68 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 127
T KPGVCLV SGPG + G+A+A ++ P+L I G G FQE QV L R
Sbjct: 61 ATGKPGVCLVTSGPGATNLLTGLADAYMDSVPLLAITGQVPTSLIGTDAFQEVDQVGLFR 120
Query: 128 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLPR 169
P KY+ + I + V +A R++ G+PG ++ +LP+
Sbjct: 121 PITKYNFEVRSPEDIPEVVARAFRIALSGRPGPVVV--DLPK 160
Score = 96.6 bits (241), Expect = 1e-20
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PR L +G GTMG GL A+ A L P ++VV + GD F +G ELET VRY L
Sbjct: 398 PRRFLTSGGLGTMGFGLPAAIGAKLAA----PDRKVVAIAGDGGFMMNGQELETAVRYGL 453
Query: 228 PVILVIVNNNGIYG 241
PV +V++NN G YG
Sbjct: 454 PVKIVVLNNGG-YG 466
Score = 44.2 bits (105), Expect = 3e-04
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 959 LPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLC 1018
LPV +V++NN G YG + T + P + K+ +G G
Sbjct: 453 LPVKIVVLNNGG-YGMVRQWQELFYGGRYSGTDLGNP-------DFVKLAEAYGAKGIRV 504
Query: 1019 TTVPQIKQAMKKCLQTTTRPSLINILINPSADRKP 1053
T ++++A+++ L + P LI+++++P P
Sbjct: 505 ETPEELEEALEEALA-SDGPVLIDVVVDPEEAVPP 538
>gnl|CDD|132918 cd07035, TPP_PYR_POX_like, Pyrimidine (PYR) binding domain of POX
and related proteins. Thiamine pyrophosphate (TPP
family), pyrimidine (PYR) binding domain of pyruvate
oxidase (POX) and related protiens subfamily. The PYR
domain is found in many key metabolic enzymes which use
TPP (also known as thiamine diphosphate) as a cofactor.
TPP binds in the cleft formed by a PYR domain and a PP
domain. The PYR domain, binds the aminopyrimidine ring
of TPP, the PP domain binds the diphosphate residue. A
polar interaction between the conserved glutamate of the
PYR domain and the N1' of the TPP aminopyrimidine ring
is shared by most TPP-dependent enzymes, and
participates in the activation of TPP. For glyoxylate
carboligase, which belongs to this subfamily, but lacks
this conserved glutamate, the rate of the initial TPP
activation step is reduced but the ensuing steps of the
enzymic reaction proceed efficiently. The PYR and PP
domains have a common fold, but do not share strong
sequence conservation. The PP domain is not included in
this sub-family. Most TPP-dependent enzymes have the PYR
and PP domains on the same subunit although these
domains can be alternatively arranged in the primary
structure. TPP-dependent enzymes are multisubunit
proteins, the smallest catalytic unit being a
dimer-of-active sites, for many the active sites lie
between PP and PYR domains on different subunits. POX
decarboxylates pyruvate, producing hydrogen peroxide and
the energy-storage metabolite acetylphosphate. This
subfamily includes pyruvate decarboxylase (PDC) and
indolepyruvate decarboxylase (IPDC). PDC catalyzes the
conversion of pyruvate to acetaldehyde and CO2 in
alcoholic fermentation. IPDC plays a role in the
indole-3-pyruvic acid (IPA) pathway in plants and
various plant-associated bacteria, it catalyzes the
decarboxylation of IPA to IAA. This subfamily also
includes the large catalytic subunit of acetohydroxyacid
synthase (AHAS). AHAS catalyzes the condensation of two
molecules of pyruvate to give the acetohydroxyacid,
2-acetolactate, a precursor of the branched chain amino
acids, valine and leucine. AHAS also catalyzes the
condensation of pyruvate and 2-ketobutyrate to form
2-aceto-2-hydroxybutyrate in isoleucine biosynthesis.
Methanococcus jannaschii sulfopyruvate decarboxylase
(MjComDE) and phosphonopyruvate decarboxylase (PpyrDc)
also belong to this subfamily. PpyrDc is a homotrimeric
enzyme having the PP and PYR domains tandemly arranged
on the same subunit. It functions in the biosynthesis of
C-P compounds such as bialaphos tripeptide in
Streptomyces hygroscopicus. MjComDE is a dodecamer
having the PYR and PP domains on different subunits, it
has six alpha (PYR/ComD) subunits and six beta (PP/ComE)
subunits. MjComDE catalyzes the decarboxylation of
sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M
pathway.
Length = 155
Score = 175 bits (446), Expect = 1e-50
Identities = 62/155 (40%), Positives = 88/155 (56%)
Query: 271 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKP 330
+ +ALK +G+++VFG+ G ++ L A + GI YI +R+EQ A A T KP
Sbjct: 1 DALVEALKAEGVDHVFGVPGGAILPLLDALARSGIRYILVRHEQGAVGMADGYARATGKP 60
Query: 331 GVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKY 390
GV LV SGPGL + G+ANA ++ P+LVI G EG G FQE QV L RP K+
Sbjct: 61 GVVLVTSGPGLTNAVTGLANAYLDSIPLLVITGQRPTAGEGRGAFQEIDQVALFRPITKW 120
Query: 391 SARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPA 425
+ R + I + + +A R++ G+PG LD P
Sbjct: 121 AYRVTSPEEIPEALRRAFRIALSGRPGPVALDLPK 155
Score = 168 bits (427), Expect = 3e-48
Identities = 59/147 (40%), Positives = 85/147 (57%)
Query: 13 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKP 72
+ +ALK +G+++VFG+ G ++ L A + GI YI +R+EQ A A T KP
Sbjct: 1 DALVEALKAEGVDHVFGVPGGAILPLLDALARSGIRYILVRHEQGAVGMADGYARATGKP 60
Query: 73 GVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKY 132
GV LV SGPGL + G+ANA ++ P+LVI G EG G FQE QV L RP K+
Sbjct: 61 GVVLVTSGPGLTNAVTGLANAYLDSIPLLVITGQRPTAGEGRGAFQEIDQVALFRPITKW 120
Query: 133 SARPPNIHLIGQHVEKAVRLSTFGKPG 159
+ R + I + + +A R++ G+PG
Sbjct: 121 AYRVTSPEEIPEALRRAFRIALSGRPG 147
>gnl|CDD|217224 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal
TPP binding domain.
Length = 172
Score = 171 bits (435), Expect = 5e-49
Identities = 60/168 (35%), Positives = 94/168 (55%), Gaps = 2/168 (1%)
Query: 271 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKK 329
+A+ALK G+++VFG+ G ++ L A + GI Y+ R+EQ A +AA T K
Sbjct: 5 DALAEALKALGVDHVFGVPGSSILPLLDALAKSPGIRYVLTRHEQGAGFAADGYARATGK 64
Query: 330 PGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQ-ECPQVELARPYC 388
PGV LV SGPG + G+ANA ++ P+LVI G G GG Q E Q+ L RP
Sbjct: 65 PGVVLVTSGPGATNALTGLANAYVDGIPVLVISGQVPTSDLGRGGLQEELDQLALFRPVT 124
Query: 389 KYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSA 436
K++ R + I + +++A R + G+PG YL+ P ++ + +++
Sbjct: 125 KWAERVTSPDEIPEALDRAFRAALSGRPGPVYLELPLDVQLEEVDEPE 172
Score = 158 bits (401), Expect = 2e-44
Identities = 60/160 (37%), Positives = 87/160 (54%), Gaps = 4/160 (2%)
Query: 13 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKK 71
+A+ALK G+++VFG+ G ++ L A + GI Y+ R+EQ A +AA T K
Sbjct: 5 DALAEALKALGVDHVFGVPGSSILPLLDALAKSPGIRYVLTRHEQGAGFAADGYARATGK 64
Query: 72 PGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQ-ECPQVELARPYC 130
PGV LV SGPG + G+ANA ++ P+LVI G G GG Q E Q+ L RP
Sbjct: 65 PGVVLVTSGPGATNALTGLANAYVDGIPVLVISGQVPTSDLGRGGLQEELDQLALFRPVT 124
Query: 131 KYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLPRH 170
K++ R + I + +++A R + G+PG L LP
Sbjct: 125 KWAERVTSPDEIPEALDRAFRAALSGRPGPVYL--ELPLD 162
>gnl|CDD|235629 PRK05858, PRK05858, hypothetical protein; Provisional.
Length = 542
Score = 163 bits (415), Expect = 2e-42
Identities = 98/353 (27%), Positives = 160/353 (45%), Gaps = 37/353 (10%)
Query: 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY 325
A ++ A+ LK G++ +F + G + L ++EGI I +R+EQ A +AA+A
Sbjct: 4 TGHAGRLAARRLKAHGVDTMFTLSGGHLFPLYDGAREEGIRLIDVRHEQTAAFAAEAWAK 63
Query: 326 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 385
LT+ PGV ++ +GPG+ + MA AQ N P++V+GG G+G QE V
Sbjct: 64 LTRVPGVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLGGRAPALRWGMGSLQEIDHVPFVA 123
Query: 386 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLE 445
P K++A + G+ V++A++ + G ++DFP + + + P L
Sbjct: 124 PVTKFAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMDHA---FSMADDDGRPGAL- 179
Query: 446 PTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505
LP PT P L +A+ L+ EA+ P+++
Sbjct: 180 TELP---------------------------AGPT---PDPDALARAAGLLAEAQRPVIM 209
Query: 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLL 565
G + AE LL +P L MG+GVVP HP S AR AL AD+VL++
Sbjct: 210 AGTDVWWGHAEAALLRLAEELGIPVLMNGMGRGVVPADHPLAFSRARGKALGEADVVLVV 269
Query: 566 GARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQL 618
G +++ L FG F +++ VD + + A + D+ + L
Sbjct: 270 GVPMDFRLGFG---VFGGTAQLVHVDDAPPQRAHHRPVAAGLYGDLSAILSAL 319
Score = 98.6 bits (246), Expect = 3e-21
Identities = 47/146 (32%), Positives = 80/146 (54%)
Query: 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY 67
A ++ A+ LK G++ +F + G + L ++EGI I +R+EQ A +AA+A
Sbjct: 4 TGHAGRLAARRLKAHGVDTMFTLSGGHLFPLYDGAREEGIRLIDVRHEQTAAFAAEAWAK 63
Query: 68 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 127
LT+ PGV ++ +GPG+ + MA AQ N P++V+GG G+G QE V
Sbjct: 64 LTRVPGVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLGGRAPALRWGMGSLQEIDHVPFVA 123
Query: 128 PYCKYSARPPNIHLIGQHVEKAVRLS 153
P K++A + G+ V++A++ +
Sbjct: 124 PVTKFAATAQSAENAGRLVDQALQAA 149
Score = 85.2 bits (211), Expect = 5e-17
Identities = 38/70 (54%), Positives = 50/70 (71%), Gaps = 5/70 (7%)
Query: 172 LDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVIL 231
LD G FG +G G G+ALAA L P ++VV +QGD AFGFS M+++TLVR+ LPV+
Sbjct: 401 LDPGPFGCLGTGPGYALAARLA----RPSRQVVLLQGDGAFGFSLMDVDTLVRHNLPVVS 456
Query: 232 VIVNNNGIYG 241
V + NNGI+G
Sbjct: 457 V-IGNNGIWG 465
Score = 35.1 bits (81), Expect = 0.23
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 15/94 (15%)
Query: 959 LPVILVIVNNNGIYG---GFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDG 1015
LPV+ V + NNGI+G EA Y V + L P RY++++ G G
Sbjct: 452 LPVVSV-IGNNGIWGLEKHPMEALYGYDVAA----------DLRPGTRYDEVVRALGGHG 500
Query: 1016 YLCTTVPQIKQAMKKCLQTTTRPSLINILINPSA 1049
L T ++ A+++ + P L+N+L +PS
Sbjct: 501 ELVTVPAELGPALERAFASGV-PYLVNVLTDPSV 533
>gnl|CDD|238962 cd02004, TPP_BZL_OCoD_HPCL, Thiamine pyrophosphate (TPP) family,
BZL_OCoD_HPCL subfamily, TPP-binding module; composed of
proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA
decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase
(2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves
the acyloin linkage of benzoin producing 2 molecules of
benzaldehyde and enabling the Pseudomonas to grow on
benzoin as the sole carbon and energy source. OCoD has a
role in the detoxification of oxalate, catalyzing the
decarboxylation of oxalyl-CoA to formate. 2-HPCL is a
peroxisomal enzyme which plays a role in the
alpha-oxidation of 3-methyl-branched fatty acids,
catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA
into formyl-CoA and a 2-methyl-branched fatty aldehyde.
All these enzymes depend on Mg2+ and TPP for activity.
Length = 172
Score = 152 bits (386), Expect = 2e-42
Identities = 55/92 (59%), Positives = 66/92 (71%), Gaps = 4/92 (4%)
Query: 159 GRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGME 218
R +L PRHRLDAGTFGT+GVGLG+A+AAAL P KRVV V+GD AFGFSGME
Sbjct: 29 ARYILRPRKPRHRLDAGTFGTLGVGLGYAIAAALAR----PDKRVVLVEGDGAFGFSGME 84
Query: 219 LETLVRYRLPVILVIVNNNGIYGGFDEATYAW 250
LET VRY LP+++V+ NN G Y G D ++
Sbjct: 85 LETAVRYNLPIVVVVGNNGGWYQGLDGQQLSY 116
Score = 81.0 bits (201), Expect = 1e-17
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 959 LPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLC 1018
LP+++V+ NN G Y G D P T+L P RY+ + FG G L
Sbjct: 93 LPIVVVVGNNGGWYQGLDGQQL-------SYGLGLPVTTLLPDTRYDLVAEAFGGKGELV 145
Query: 1019 TTVPQIKQAMKKCLQTTTRPSLINILI 1045
TT ++K A+K+ L + +P+LIN++I
Sbjct: 146 TTPEELKPALKRALA-SGKPALINVII 171
Score = 34.4 bits (80), Expect = 0.13
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 652 KLPVILVIVNNNGIYGGFDETTY 674
LP+++V+ NN G Y G D
Sbjct: 92 NLPIVVVVGNNGGWYQGLDGQQL 114
Score = 33.3 bits (77), Expect = 0.36
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 687 LPVILVIVNNNGIYGGFDETTY 708
LP+++V+ NN G Y G D
Sbjct: 93 LPIVVVVGNNGGWYQGLDGQQL 114
Score = 33.3 bits (77), Expect = 0.36
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 721 LPVILVIVNNNGIYGGFDETTY 742
LP+++V+ NN G Y G D
Sbjct: 93 LPIVVVVGNNGGWYQGLDGQQL 114
Score = 33.3 bits (77), Expect = 0.36
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 755 LPVILVIVNNNGIYGGFDETTY 776
LP+++V+ NN G Y G D
Sbjct: 93 LPIVVVVGNNGGWYQGLDGQQL 114
Score = 33.3 bits (77), Expect = 0.36
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 789 LPVILVIVNNNGIYGGFDETTY 810
LP+++V+ NN G Y G D
Sbjct: 93 LPIVVVVGNNGGWYQGLDGQQL 114
Score = 33.3 bits (77), Expect = 0.36
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 823 LPVILVIVNNNGIYGGFDETTY 844
LP+++V+ NN G Y G D
Sbjct: 93 LPIVVVVGNNGGWYQGLDGQQL 114
Score = 33.3 bits (77), Expect = 0.36
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 857 LPVILVIVNNNGIYGGFDETTY 878
LP+++V+ NN G Y G D
Sbjct: 93 LPIVVVVGNNGGWYQGLDGQQL 114
Score = 33.3 bits (77), Expect = 0.36
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 891 LPVILVIVNNNGIYGGFDETTY 912
LP+++V+ NN G Y G D
Sbjct: 93 LPIVVVVGNNGGWYQGLDGQQL 114
>gnl|CDD|232833 TIGR00118, acolac_lg, acetolactate synthase, large subunit,
biosynthetic type. Two groups of proteins form
acetolactate from two molecules of pyruvate. The type of
acetolactate synthase described in this model also
catalyzes the formation of acetohydroxybutyrate from
pyruvate and 2-oxobutyrate, an early step in the
branched chain amino acid biosynthesis; it is therefore
also termed acetohydroxyacid synthase. In bacteria, this
catalytic chain is associated with a smaller regulatory
chain in an alpha2/beta2 heterotetramer. Acetolactate
synthase is a thiamine pyrophosphate enzyme. In this
type, FAD and Mg++ are also found. Several isozymes of
this enzyme are found in E. coli K12, one of which
contains a frameshift in the large subunit gene and is
not expressed [Amino acid biosynthesis, Pyruvate
family].
Length = 558
Score = 161 bits (409), Expect = 1e-41
Identities = 100/388 (25%), Positives = 168/388 (43%), Gaps = 56/388 (14%)
Query: 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGY 325
+S + I ++LK +G++ VFG G ++ + A + GI +I +R+EQ A +AA
Sbjct: 1 MSGAEAIIESLKDEGVKTVFGYPGGAILPIYDALYNDSGIEHILVRHEQGAAHAADGYAR 60
Query: 326 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 385
+ K GV LV SGPG + G+A A ++ PM+V G G FQE + +
Sbjct: 61 ASGKVGVVLVTSGPGATNLVTGIATAYMDSIPMVVFTGQVPTSLIGSDAFQEADILGITM 120
Query: 386 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLE 445
P K+S + + I + +++A ++T G+PG +D P ++ I
Sbjct: 121 PITKHSFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKDVTTAEIE------------ 168
Query: 446 PTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505
P+P L P P ++K+A+ LI AK P+++
Sbjct: 169 --YPYPEKVNLP--------GYRP---------TVKGHPL--QIKKAAELINLAKKPVIL 207
Query: 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH-------ALQN 558
+G G + A EL +P T MG G P+ HP + H A+
Sbjct: 208 VGGGVIIAGASEELKELAERIQIPVTTTLMGLGSFPEDHPLSLGMLGMHGTKTANLAVHE 267
Query: 559 ADLVLLLGARLNWILHF-----GRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRL 613
DL++ +GAR F G +F N KII +D++ E+ +V+ + I D R
Sbjct: 268 CDLIIAVGAR------FDDRVTGNLAKFAPNAKIIHIDIDPAEIGKNVRVDIPIVGDARN 321
Query: 614 TVQQLKQMLSHTQRNWSFSATSPWWQEL 641
+++L + L S W +++
Sbjct: 322 VLEELLKKL----FELKERKESAWLEQI 345
Score = 95.6 bits (238), Expect = 3e-20
Identities = 48/152 (31%), Positives = 81/152 (53%), Gaps = 1/152 (0%)
Query: 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGY 67
+S + I ++LK +G++ VFG G ++ + A + GI +I +R+EQ A +AA
Sbjct: 1 MSGAEAIIESLKDEGVKTVFGYPGGAILPIYDALYNDSGIEHILVRHEQGAAHAADGYAR 60
Query: 68 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 127
+ K GV LV SGPG + G+A A ++ PM+V G G FQE + +
Sbjct: 61 ASGKVGVVLVTSGPGATNLVTGIATAYMDSIPMVVFTGQVPTSLIGSDAFQEADILGITM 120
Query: 128 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
P K+S + + I + +++A ++T G+PG
Sbjct: 121 PITKHSFQVKSAEDIPRIIKEAFHIATTGRPG 152
Score = 62.8 bits (153), Expect = 6e-10
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 28/154 (18%)
Query: 142 IGQHVEKAVRLSTFGKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGK 201
+GQH A + F KP R + +G GTMG GL A+ A + P
Sbjct: 386 VGQHQMWAAQFYPFRKP----------RRFITSGGLGTMGFGLPAAIGAKVA----KPES 431
Query: 202 RVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSE 261
V+C+ GD +F + EL T V+Y +PV ++I+NN + W ++ + S
Sbjct: 432 TVICITGDGSFQMNLQELSTAVQYDIPVKILILNN-----RYLGMVRQWQELFYEERYSH 486
Query: 262 DYDEELSANQVIAQALKFQGIEYVFGIVGIPVIE 295
+ L +A+A +GI GI + +
Sbjct: 487 THMGSLPDFVKLAEA---------YGIKGIRIEK 511
>gnl|CDD|236239 PRK08322, PRK08322, acetolactate synthase; Reviewed.
Length = 547
Score = 155 bits (395), Expect = 8e-40
Identities = 103/379 (27%), Positives = 164/379 (43%), Gaps = 55/379 (14%)
Query: 269 ANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTK 328
A + + L+ +G+EY+FGI G ++L A + I I R+EQ A + A G LT
Sbjct: 3 AADLFVKCLENEGVEYIFGIPGEENLDLLEALRDSSIKLILTRHEQGAAFMAATYGRLTG 62
Query: 329 KPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYC 388
K GVCL GPG + G+A AQ+ PM+ I G G FQ V + P
Sbjct: 63 KAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAITGQKPIKRSKQGSFQIVDVVAMMAPLT 122
Query: 389 KYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTP-KVLEPT 447
K++ + + I + V +A RL+ +PG +L+ P ++ A+ T K L +
Sbjct: 123 KWTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPEDIAAE--------ETDGKPLPRS 174
Query: 448 LPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVIIG 507
A K +++A+ I AK PL++IG
Sbjct: 175 YSRRPYASPKA------------------------------IERAAEAIQAAKNPLILIG 204
Query: 508 KGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH-------ALQNAD 560
GA A L FV+ +PF T MGKGV+P+ HP + A A+++AD
Sbjct: 205 AGANRKTASKALTEFVDKTGIPFFTTQMGKGVIPETHPLSLGTAGLSQGDYVHCAIEHAD 264
Query: 561 LVLLLGARLNWILHFGRAPRF---KSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQ 617
L++ +G + + P F + K+I ++ E+ V + D+ ++ Q
Sbjct: 265 LIINVGHDV-----IEKPPFFMNPNGDKKVIHINFLPAEVDPVYFPQVEVVGDIANSLWQ 319
Query: 618 LKQMLSHTQRNWSFSATSP 636
LK+ L+ Q +W F
Sbjct: 320 LKERLA-DQPHWDFPRFLK 337
Score = 88.0 bits (219), Expect = 9e-18
Identities = 50/149 (33%), Positives = 74/149 (49%)
Query: 11 ANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTK 70
A + + L+ +G+EY+FGI G ++L A + I I R+EQ A + A G LT
Sbjct: 3 AADLFVKCLENEGVEYIFGIPGEENLDLLEALRDSSIKLILTRHEQGAAFMAATYGRLTG 62
Query: 71 KPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYC 130
K GVCL GPG + G+A AQ+ PM+ I G G FQ V + P
Sbjct: 63 KAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAITGQKPIKRSKQGSFQIVDVVAMMAPLT 122
Query: 131 KYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
K++ + + I + V +A RL+ +PG
Sbjct: 123 KWTRQIVSPDNIPEVVREAFRLAEEERPG 151
Score = 59.8 bits (146), Expect = 5e-09
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNN 236
TMG GL A+AA L P ++V+ V GD F + ELET VR LP++++I+N+
Sbjct: 405 LATMGAGLPSAIAAKLVH----PDRKVLAVCGDGGFMMNSQELETAVRLGLPLVVLILND 460
Query: 237 NGIYG 241
N YG
Sbjct: 461 NA-YG 464
>gnl|CDD|215786 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central
domain. The central domain of TPP enzymes contains a
2-fold Rossman fold.
Length = 136
Score = 139 bits (353), Expect = 2e-38
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 8/137 (5%)
Query: 489 LKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV 548
+ +A+ L+ AK P+++ G G S A EL + +P + T MGKG P+ HP +
Sbjct: 1 IDKAAELLASAKRPVILAGGGVRRSGASEELRALAEKLGIPVVTTLMGKGAFPEDHPLYL 60
Query: 549 -------SAARTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSV 601
+ A AL+ ADLVL +GAR + G P F + KII +D++ E+ +
Sbjct: 61 GMLGMHGTPAANEALEEADLVLAIGARFDD-RGTGSLPEFAPDAKIIHIDIDPAEIGKNY 119
Query: 602 QAAVAIQSDVRLTVQQL 618
V I D + ++ L
Sbjct: 120 PVDVPIVGDAKEALEAL 136
>gnl|CDD|181502 PRK08611, PRK08611, pyruvate oxidase; Provisional.
Length = 576
Score = 147 bits (374), Expect = 4e-37
Identities = 98/392 (25%), Positives = 175/392 (44%), Gaps = 66/392 (16%)
Query: 269 ANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQAIGYL 326
A + + + L+ GI++V+GI G + + A+ +Q+ I +I +R+E+ A AA A L
Sbjct: 6 AGEALVKLLQDWGIDHVYGIPGDSIDAVVDALRKEQDKIKFIQVRHEEVAALAAAAYAKL 65
Query: 327 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARP 386
T K GVCL + GPG +H G+ +A+++ P+L + G D G FQE ++
Sbjct: 66 TGKIGVCLSIGGPGAIHLLNGLYDAKMDHVPVLALAGQVTSDLLGTDFFQEVNLEKMFED 125
Query: 387 YCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEP 446
Y+ + + + + V +A+R + + K GV+ L P +L AQ+I +
Sbjct: 126 VAVYNHQIMSAENLPEIVNQAIR-TAYEKKGVAVLTIPDDLPAQKIKDTTNKTVDTF--- 181
Query: 447 TLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVII 506
PT+P P ++K+A++LI +AK P+++
Sbjct: 182 -------------------------------RPTVPSPKPKDIKKAAKLINKAKKPVILA 210
Query: 507 GKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV-------SAARTHALQNA 559
G GA A+ ELL+F +P + T KG++PD HP + + A+Q A
Sbjct: 211 GLGA--KHAKEELLAFAEKAKIPIIHTLPAKGIIPDDHPYSLGNLGKIGTKPAYEAMQEA 268
Query: 560 DLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQL- 618
DL++++G ++ K IQ+D + + V + D + + QL
Sbjct: 269 DLLIMVGT------NYPYVDYLPKKAKAIQIDTDPANIGKRYPVNVGLVGDAKKALHQLT 322
Query: 619 --------KQMLSHTQRNWSFSATSPWWQELK 642
++ L Q N + WW+ ++
Sbjct: 323 ENIKHVEDRRFLEACQEN-----MAKWWKWME 349
Score = 76.6 bits (189), Expect = 3e-14
Identities = 39/111 (35%), Positives = 64/111 (57%), Gaps = 2/111 (1%)
Query: 11 ANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQAIGYL 68
A + + + L+ GI++V+GI G + + A+ +Q+ I +I +R+E+ A AA A L
Sbjct: 6 AGEALVKLLQDWGIDHVYGIPGDSIDAVVDALRKEQDKIKFIQVRHEEVAALAAAAYAKL 65
Query: 69 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE 119
T K GVCL + GPG +H G+ +A+++ P+L + G D G FQE
Sbjct: 66 TGKIGVCLSIGGPGAIHLLNGLYDAKMDHVPVLALAGQVTSDLLGTDFFQE 116
Score = 51.2 bits (123), Expect = 3e-06
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 178 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNN 237
GTMG GL A+AA + P ++ + + GD F + T V+Y+LP+++V++NN
Sbjct: 408 GTMGCGLPGAIAAKIA----FPDRQAIAICGDGGFSMVMQDFVTAVKYKLPIVVVVLNNQ 463
Query: 238 GI 239
+
Sbjct: 464 QL 465
>gnl|CDD|181602 PRK08979, PRK08979, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 572
Score = 147 bits (373), Expect = 5e-37
Identities = 101/390 (25%), Positives = 178/390 (45%), Gaps = 48/390 (12%)
Query: 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAI 323
E LS +I ++L +G++++FG G V+++ A ++ GI +I +R+EQAA + A
Sbjct: 2 EMLSGASMIVRSLIDEGVKHIFGYPGGSVLDIYDALHEKSGIEHILVRHEQAAVHMADGY 61
Query: 324 GYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVEL 383
T K GV LV SGPG +T G+A A ++ PM+V+ G + G FQEC + +
Sbjct: 62 ARATGKVGVVLVTSGPGATNTITGIATAYMDSIPMVVLSGQVPSNLIGNDAFQECDMIGI 121
Query: 384 ARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKV 443
+RP K+S + I + ++KA +++ G+PG +D P +
Sbjct: 122 SRPVVKHSFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKD----------------C 165
Query: 444 LEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503
L P ++ + P I + PT ++K+ + +L AK P+
Sbjct: 166 LNP--------------AILHPYEYPESIKMRSYNPTTSGHK-GQIKRGLQALLAAKKPV 210
Query: 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH-------AL 556
+ +G GA S A+ ++L NLP + T MG G P H N + H A+
Sbjct: 211 LYVGGGAIISGADKQILQLAEKLNLPVVSTLMGLGAFPGTHKNSLGMLGMHGRYEANMAM 270
Query: 557 QNADLVLLLGARLNWILHFGRAP----RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVR 612
NADL+ +G R + R ++ N I+ +D++ + +V+ + I
Sbjct: 271 HNADLIFGIGVRFD-----DRTTNNLEKYCPNATILHIDIDPSSISKTVRVDIPIVGSAD 325
Query: 613 LTVQQLKQMLSHTQRNWSFSATSPWWQELK 642
+ + +L + +A + WW E++
Sbjct: 326 KVLDSMLALLDESGETNDEAAIASWWNEIE 355
Score = 95.7 bits (238), Expect = 4e-20
Identities = 53/154 (34%), Positives = 89/154 (57%), Gaps = 1/154 (0%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAI 65
E LS +I ++L +G++++FG G V+++ A ++ GI +I +R+EQAA + A
Sbjct: 2 EMLSGASMIVRSLIDEGVKHIFGYPGGSVLDIYDALHEKSGIEHILVRHEQAAVHMADGY 61
Query: 66 GYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVEL 125
T K GV LV SGPG +T G+A A ++ PM+V+ G + G FQEC + +
Sbjct: 62 ARATGKVGVVLVTSGPGATNTITGIATAYMDSIPMVVLSGQVPSNLIGNDAFQECDMIGI 121
Query: 126 ARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
+RP K+S + I + ++KA +++ G+PG
Sbjct: 122 SRPVVKHSFLVKDAEDIPEIIKKAFYIASTGRPG 155
Score = 54.8 bits (132), Expect = 2e-07
Identities = 43/141 (30%), Positives = 62/141 (43%), Gaps = 19/141 (13%)
Query: 142 IGQHVEKAVRLSTFGKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGK 201
+GQH A F KP R +++G GTMG F L AA+ P +
Sbjct: 395 VGQHQMFAALYYPFDKP----------RRWINSGGLGTMG----FGLPAAMGVKFAMPDE 440
Query: 202 RVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSE 261
VVCV GD + + EL T ++Y +PV ++ +NN F W D+I + S
Sbjct: 441 TVVCVTGDGSIQMNIQELSTALQYDIPVKIINLNNR-----FLGMVKQWQDMIYQGRHSH 495
Query: 262 DYDEELSANQVIAQALKFQGI 282
Y + + IA+A GI
Sbjct: 496 SYMDSVPDFAKIAEAYGHVGI 516
>gnl|CDD|181185 PRK07979, PRK07979, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 146 bits (370), Expect = 1e-36
Identities = 101/386 (26%), Positives = 176/386 (45%), Gaps = 40/386 (10%)
Query: 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAI 323
E LS +++ ++L QG++ VFG G V+++ A GI ++ +R+EQAA + A +
Sbjct: 2 EMLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGL 61
Query: 324 GYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVEL 383
T + GV LV SGPG + G+A A ++ P++V+ G A G FQEC V +
Sbjct: 62 ARATGEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVGI 121
Query: 384 ARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKV 443
+RP K+S I Q ++KA L+ G+PG +D P ++L P
Sbjct: 122 SRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDIL-----------NPAN 170
Query: 444 LEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503
P + WP ++ + K ++K+A + ++ AK P+
Sbjct: 171 KLPYV-WPESVSMRSYNPTTQGHK-------------------GQIKRALQTLVAAKKPV 210
Query: 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH-------AL 556
V +G GA + +L V NLP + + MG G P H + H +
Sbjct: 211 VYVGGGAINAACHQQLKELVEKLNLPVVSSLMGLGAFPATHRQSLGMLGMHGTYEANMTM 270
Query: 557 QNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQ 616
NAD++ +G R + A ++ N ++ +D++ + +V A + I D R ++
Sbjct: 271 HNADVIFAVGVRFDDRTTNNLA-KYCPNATVLHIDIDPTSISKTVTADIPIVGDARQVLE 329
Query: 617 QLKQMLSHTQRNWSFSATSPWWQELK 642
Q+ ++LS + WWQ+++
Sbjct: 330 QMLELLSQESAHQPLDEIRDWWQQIE 355
Score = 89.1 bits (221), Expect = 3e-18
Identities = 54/154 (35%), Positives = 85/154 (55%), Gaps = 1/154 (0%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAI 65
E LS +++ ++L QG++ VFG G V+++ A GI ++ +R+EQAA + A +
Sbjct: 2 EMLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGL 61
Query: 66 GYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVEL 125
T + GV LV SGPG + G+A A ++ P++V+ G A G FQEC V +
Sbjct: 62 ARATGEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVGI 121
Query: 126 ARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
+RP K+S I Q ++KA L+ G+PG
Sbjct: 122 SRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPG 155
Score = 60.6 bits (147), Expect = 3e-09
Identities = 44/141 (31%), Positives = 63/141 (44%), Gaps = 19/141 (13%)
Query: 142 IGQHVEKAVRLSTFGKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGK 201
+GQH A F KP R +++G GTMG F L AAL P +
Sbjct: 395 VGQHQMFAALYYPFDKP----------RRWINSGGLGTMG----FGLPAALGVKMALPEE 440
Query: 202 RVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSE 261
VVCV GD + + EL T ++Y LPV+++ +NN + W D+I S+
Sbjct: 441 TVVCVTGDGSIQMNIQELSTALQYELPVLVLNLNN-----RYLGMVKQWQDMIYSGRHSQ 495
Query: 262 DYDEELSANQVIAQALKFQGI 282
Y + L +A+A GI
Sbjct: 496 SYMQSLPDFVRLAEAYGHVGI 516
>gnl|CDD|180672 PRK06725, PRK06725, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 570
Score = 145 bits (368), Expect = 2e-36
Identities = 102/386 (26%), Positives = 173/386 (44%), Gaps = 41/386 (10%)
Query: 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIG 324
EE++ + Q LK G+ VFG G ++ + A + G+ +I R+EQAA +AA+
Sbjct: 13 EEVTGAGHVIQCLKKLGVTTVFGYPGGAILPVYDALYESGLKHILTRHEQAAIHAAEGYA 72
Query: 325 YLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELA 384
+ K GV SGPG + G+A+A ++ P++VI G A G GFQE V +
Sbjct: 73 RASGKVGVVFATSGPGATNLVTGLADAYMDSIPLVVITGQVATPLIGKDGFQEADVVGIT 132
Query: 385 RPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVL 444
P K++ + +++ + + V++A ++ G+PG +D P ++ +++
Sbjct: 133 VPVTKHNYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDVQNEKV------------ 180
Query: 445 EPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLV 504
T + + E I G EP P +L++ ++ I +AK PL+
Sbjct: 181 --TSFYNEVVE----------------IPGYKPEPR---PDSMKLREVAKAISKAKRPLL 219
Query: 505 IIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH-------ALQ 557
IG G +S EL+ F +P + T MG G P P + H A+
Sbjct: 220 YIGGGVIHSGGSEELIEFARENRIPVVSTLMGLGAYPPGDPLFLGMLGMHGTYAANMAVT 279
Query: 558 NADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQ 617
DL+L LG R + + G+ F + K + +D++ E H +V + DV+ +
Sbjct: 280 ECDLLLALGVRFDDRVT-GKLELFSPHSKKVHIDIDPSEFHKNVAVEYPVVGDVKKALHM 338
Query: 618 LKQMLSHTQRNWSFSATSPWWQELKL 643
L M HTQ + W +E L
Sbjct: 339 LLHMSIHTQTDEWLQKVKTWKEEYPL 364
Score = 87.3 bits (216), Expect = 1e-17
Identities = 49/157 (31%), Positives = 85/157 (54%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIG 66
EE++ + Q LK G+ VFG G ++ + A + G+ +I R+EQAA +AA+
Sbjct: 13 EEVTGAGHVIQCLKKLGVTTVFGYPGGAILPVYDALYESGLKHILTRHEQAAIHAAEGYA 72
Query: 67 YLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELA 126
+ K GV SGPG + G+A+A ++ P++VI G A G GFQE V +
Sbjct: 73 RASGKVGVVFATSGPGATNLVTGLADAYMDSIPLVVITGQVATPLIGKDGFQEADVVGIT 132
Query: 127 RPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLL 163
P K++ + +++ + + V++A ++ G+PG L+
Sbjct: 133 VPVTKHNYQVRDVNQLSRIVQEAFYIAESGRPGPVLI 169
Score = 51.5 bits (123), Expect = 2e-06
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PR L +G GTMG G A+ A L + V+C+ GD++F + EL+T+ +
Sbjct: 412 PRTFLTSGGLGTMGFGFPAAIGAQLA----KEEELVICIAGDASFQMNIQELQTIAENNI 467
Query: 228 PVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSE 261
PV + I+NN F W ++ ++ +SE
Sbjct: 468 PVKVFIINN-----KFLGMVRQWQEMFYENRLSE 496
>gnl|CDD|181257 PRK08155, PRK08155, acetolactate synthase catalytic subunit;
Validated.
Length = 564
Score = 141 bits (357), Expect = 6e-35
Identities = 106/374 (28%), Positives = 165/374 (44%), Gaps = 45/374 (12%)
Query: 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAI 323
+ + ++I + L+ QGI V GI G ++ L A Q I +I R+EQ A + AQ +
Sbjct: 11 KRFTGAELIVRLLERQGIRIVTGIPGGAILPLYDALSQSTQIRHILARHEQGAGFIAQGM 70
Query: 324 GYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVEL 383
T KP VC+ SGPG + +A+A+++ P++ I G G FQE +
Sbjct: 71 ARTTGKPAVCMACSGPGATNLVTAIADARLDSIPLVCITGQVPASMIGTDAFQEVDTYGI 130
Query: 384 ARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKV 443
+ P K++ +I + Q + A R++ G+PG ++D P ++ I A
Sbjct: 131 SIPITKHNYLVRDIEELPQVISDAFRIAQSGRPGPVWIDIPKDVQTAVIELEA------- 183
Query: 444 LEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503
P AE A P ++ A+ +I AK P+
Sbjct: 184 ------LPAPAEKDAA----------------------PAFDEESIRDAAAMINAAKRPV 215
Query: 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVS-----AART--HAL 556
+ +G G S A LP T M G++P AHP + AR+ + L
Sbjct: 216 LYLGGGVINSGAPARARELAEKAQLPTTMTLMALGMLPKAHPLSLGMLGMHGARSTNYIL 275
Query: 557 QNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQ 616
Q ADL+++LGAR + G+ +F N KII VD++ EL Q VAIQ+DV +
Sbjct: 276 QEADLLIVLGARFD-DRAIGKTEQFCPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLA 334
Query: 617 QLKQMLSHTQR-NW 629
QL ++ R W
Sbjct: 335 QLLPLVEAQPRAEW 348
Score = 68.2 bits (167), Expect = 1e-11
Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 1/154 (0%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAI 65
+ + ++I + L+ QGI V GI G ++ L A Q I +I R+EQ A + AQ +
Sbjct: 11 KRFTGAELIVRLLERQGIRIVTGIPGGAILPLYDALSQSTQIRHILARHEQGAGFIAQGM 70
Query: 66 GYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVEL 125
T KP VC+ SGPG + +A+A+++ P++ I G G FQE +
Sbjct: 71 ARTTGKPAVCMACSGPGATNLVTAIADARLDSIPLVCITGQVPASMIGTDAFQEVDTYGI 130
Query: 126 ARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
+ P K++ +I + Q + A R++ G+PG
Sbjct: 131 SIPITKHNYLVRDIEELPQVISDAFRIAQSGRPG 164
Score = 55.1 bits (133), Expect = 1e-07
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 166 NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRY 225
N PR L +G GTMG GL A+ AAL P ++V+C GD + + E+ T
Sbjct: 407 NRPRQWLTSGGLGTMGFGLPAAIGAALAN----PERKVLCFSGDGSLMMNIQEMATAAEN 462
Query: 226 RLPVILVIVNNN 237
+L V ++++NN
Sbjct: 463 QLDVKIILMNNE 474
>gnl|CDD|168717 PRK06882, PRK06882, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 137 bits (346), Expect = 1e-33
Identities = 96/385 (24%), Positives = 175/385 (45%), Gaps = 40/385 (10%)
Query: 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAI 323
++LS +++ Q+L+ +G+EYVFG G V+++ A GI ++ +R+EQAA + A
Sbjct: 2 KKLSGAEMVVQSLRDEGVEYVFGYPGGSVLDIYDAIHTLGGIEHVLVRHEQAAVHMADGY 61
Query: 324 GYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVEL 383
T K G LV SGPG + G+A A + P++++ G + G FQEC + +
Sbjct: 62 ARSTGKVGCVLVTSGPGATNAITGIATAYTDSVPLVILSGQVPSNLIGTDAFQECDMLGI 121
Query: 384 ARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKV 443
+RP K+S N I ++KA +++ G+PG +D P +++ P K
Sbjct: 122 SRPVVKHSFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKDMVN---------PANKF 172
Query: 444 LEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503
T +P L+ + + K ++K+A + +L AK P+
Sbjct: 173 ---TYEYPEEVSLRSYNPTVQGHK-------------------GQIKKALKALLVAKKPV 210
Query: 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH-------AL 556
+ +G G ++ +L F NLP + MG G P + H A+
Sbjct: 211 LFVGGGVITAECSEQLTQFAQKLNLPVTSSLMGLGAYPSTDKQFLGMLGMHGTYEANNAM 270
Query: 557 QNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQ 616
+DL+L +G R + A ++ N K+I +D++ + +V A + I + ++
Sbjct: 271 HESDLILGIGVRFDDRTTNNLA-KYCPNAKVIHIDIDPTSISKNVPAYIPIVGSAKNVLE 329
Query: 617 QLKQMLSHTQRNWSFSATSPWWQEL 641
+ +L S + + WWQ++
Sbjct: 330 EFLSLLEEENLAKSQTDLTAWWQQI 354
Score = 91.1 bits (226), Expect = 1e-18
Identities = 51/154 (33%), Positives = 86/154 (55%), Gaps = 1/154 (0%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAI 65
++LS +++ Q+L+ +G+EYVFG G V+++ A GI ++ +R+EQAA + A
Sbjct: 2 KKLSGAEMVVQSLRDEGVEYVFGYPGGSVLDIYDAIHTLGGIEHVLVRHEQAAVHMADGY 61
Query: 66 GYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVEL 125
T K G LV SGPG + G+A A + P++++ G + G FQEC + +
Sbjct: 62 ARSTGKVGCVLVTSGPGATNAITGIATAYTDSVPLVILSGQVPSNLIGTDAFQECDMLGI 121
Query: 126 ARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
+RP K+S N I ++KA +++ G+PG
Sbjct: 122 SRPVVKHSFIVKNAEDIPSTIKKAFYIASTGRPG 155
Score = 58.8 bits (142), Expect = 1e-08
Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 166 NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRY 225
+ PR +++G GTMG F L AA+ P VVCV GD + + EL T +Y
Sbjct: 409 DKPRRWINSGGAGTMG----FGLPAAIGVKFAHPEATVVCVTGDGSIQMNIQELSTAKQY 464
Query: 226 RLPVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIE 283
+PV++V +NN F W D+I S+ Y L +A+A GI+
Sbjct: 465 DIPVVIVSLNNR-----FLGMVKQWQDLIYSGRHSQVYMNSLPDFAKLAEAYGHVGIQ 517
>gnl|CDD|180780 PRK06965, PRK06965, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 587
Score = 137 bits (346), Expect = 2e-33
Identities = 96/392 (24%), Positives = 175/392 (44%), Gaps = 51/392 (13%)
Query: 264 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMAC-QQEGIHYIGMRNEQAACYAAQA 322
+ +++ +AL +G+E+++G G V+ + +Q+ I ++ +R+EQAA +AA
Sbjct: 18 AADSIGAEILMKALAAEGVEFIWGYPGGAVLYIYDELYKQDKIQHVLVRHEQAAVHAADG 77
Query: 323 IGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVE 382
T K GV LV SGPG+ + G+A A ++ PM+VI G G FQEC V
Sbjct: 78 YARATGKVGVALVTSGPGVTNAVTGIATAYMDSIPMVVISGQVPTAAIGQDAFQECDTVG 137
Query: 383 LARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPK 442
+ RP K++ ++ + + V+KA ++ G+PG +D P ++ + P
Sbjct: 138 ITRPIVKHNFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKDV--------SKTPCE- 188
Query: 443 VLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAP 502
+P E++ + P ++++A L+L AK P
Sbjct: 189 -----YEYPKSVEMRSYN------------------PVTKGHS-GQIRKAVSLLLSAKRP 224
Query: 503 LVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH-------A 555
+ G G + A EL + P T MG G P + + H A
Sbjct: 225 YIYTGGGVILANASRELRQLADLLGYPVTNTLMGLGAYPASDKKFLGMLGMHGTYEANMA 284
Query: 556 LQNADLVLLLGARLNWIL-----HFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSD 610
+Q+ D+++ +GAR + + HF PR KII +D++ + V+ + I D
Sbjct: 285 MQHCDVLIAIGARFDDRVIGNPAHFASRPR-----KIIHIDIDPSSISKRVKVDIPIVGD 339
Query: 611 VRLTVQQLKQMLSHTQRNWSFSATSPWWQELK 642
V+ +++L + L + A + WW++++
Sbjct: 340 VKEVLKELIEQLQTAEHGPDADALAQWWKQIE 371
Score = 94.1 bits (234), Expect = 9e-20
Identities = 49/155 (31%), Positives = 85/155 (54%), Gaps = 1/155 (0%)
Query: 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMAC-QQEGIHYIGMRNEQAACYAAQA 64
+ +++ +AL +G+E+++G G V+ + +Q+ I ++ +R+EQAA +AA
Sbjct: 18 AADSIGAEILMKALAAEGVEFIWGYPGGAVLYIYDELYKQDKIQHVLVRHEQAAVHAADG 77
Query: 65 IGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVE 124
T K GV LV SGPG+ + G+A A ++ PM+VI G G FQEC V
Sbjct: 78 YARATGKVGVALVTSGPGVTNAVTGIATAYMDSIPMVVISGQVPTAAIGQDAFQECDTVG 137
Query: 125 LARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
+ RP K++ ++ + + V+KA ++ G+PG
Sbjct: 138 ITRPIVKHNFLVKDVRDLAETVKKAFYIARTGRPG 172
Score = 49.0 bits (117), Expect = 1e-05
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 14/95 (14%)
Query: 142 IGQHVEKAVRLSTFGKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGK 201
+GQH A + F N PR +++G GTMGVGL +A+ + P
Sbjct: 411 VGQHQMWAAQFYRF----------NEPRRWINSGGLGTMGVGLPYAMGIKMA----HPDD 456
Query: 202 RVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNN 236
VVC+ G+ + EL T ++Y PV ++ +NN
Sbjct: 457 DVVCITGEGSIQMCIQELSTCLQYDTPVKIISLNN 491
>gnl|CDD|181337 PRK08266, PRK08266, hypothetical protein; Provisional.
Length = 542
Score = 134 bits (340), Expect = 7e-33
Identities = 95/390 (24%), Positives = 149/390 (38%), Gaps = 56/390 (14%)
Query: 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQA 322
++ + I L G++ VFG+ G + L A+ + I I R+EQAA Y A
Sbjct: 2 TTMTGGEAIVAGLVAHGVDTVFGLPGAQLYWLFDALYKAGDRIRVIHTRHEQAAGYMAFG 61
Query: 323 IGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDH--EGIGGFQECP- 379
T +PGVC VV GPG+L+ + A P+L + G +G G E P
Sbjct: 62 YARSTGRPGVCSVVPGPGVLNAGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPD 121
Query: 380 QVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVP 439
Q+ R + K++ R + V +A + G+P L+ P ++ QR +A P
Sbjct: 122 QLATLRSFTKWAERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWDVFGQRAPVAAAPP 181
Query: 440 TPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEA 499
P IA A+ LI A
Sbjct: 182 LRPAPPPAPDPDAIAA------------------------------------AAALIAAA 205
Query: 500 KAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHP---NCVSAARTHAL 556
K P++ +G GAA A E+ P + G+G+V D HP N +A
Sbjct: 206 KNPMIFVGGGAA--GAGEEIRELAEMLQAPVVAFRSGRGIVSDRHPLGLNFAAAYEL--W 261
Query: 557 QNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQ 616
D+V+ +G+RL L R P +K+I++D++ E ++ VAI +D +
Sbjct: 262 PQTDVVIGIGSRL--ELPTFRWPWRPDGLKVIRIDIDPTE-MRRLKPDVAIVADAKAGTA 318
Query: 617 QLKQMLS-----HTQRNWSFSATSPWWQEL 641
L LS R ++
Sbjct: 319 ALLDALSKAGSKRPSRRAELRELKAAARQR 348
Score = 75.4 bits (186), Expect = 7e-14
Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 5/158 (3%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQA 64
++ + I L G++ VFG+ G + L A+ + I I R+EQAA Y A
Sbjct: 2 TTMTGGEAIVAGLVAHGVDTVFGLPGAQLYWLFDALYKAGDRIRVIHTRHEQAAGYMAFG 61
Query: 65 IGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDH--EGIGGFQECP- 121
T +PGVC VV GPG+L+ + A P+L + G +G G E P
Sbjct: 62 YARSTGRPGVCSVVPGPGVLNAGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPD 121
Query: 122 QVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
Q+ R + K++ R + V +A + G+P
Sbjct: 122 QLATLRSFTKWAERIEHPSEAPALVAEAFQQMLSGRPR 159
Score = 60.4 bits (147), Expect = 3e-09
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PR + G GT+G G AL A + P + VV + GD F F EL T V++ +
Sbjct: 392 PRTFVTCGYQGTLGYGFPTALGAKVAN----PDRPVVSITGDGGFMFGVQELATAVQHNI 447
Query: 228 PVILVIVNNNGIYG 241
V+ +V NN YG
Sbjct: 448 GVV-TVVFNNNAYG 460
>gnl|CDD|180368 PRK06048, PRK06048, acetolactate synthase 3 catalytic subunit;
Reviewed.
Length = 561
Score = 134 bits (340), Expect = 8e-33
Identities = 97/397 (24%), Positives = 178/397 (44%), Gaps = 41/397 (10%)
Query: 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIG 324
E+++ + I + L+ +G+E +FG G +I + + +I +R+EQAA +AA
Sbjct: 6 EKMTGARAIIKCLEKEGVEVIFGYPGGAIIPVYDELYDSDLRHILVRHEQAAAHAADGYA 65
Query: 325 YLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELA 384
T K GVC+ SGPG + G+A A ++ P++ + G + G FQE +
Sbjct: 66 RATGKVGVCVATSGPGATNLVTGIATAYMDSVPIVALTGQVPRSMIGNDAFQEADITGIT 125
Query: 385 RPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVL 444
P K++ + + + +++A +++ G+PG +D P ++ I+
Sbjct: 126 MPITKHNYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKDVTTAEID----------- 174
Query: 445 EPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLV 504
+P EL+ +PT ++K+A+ LI++A+ P++
Sbjct: 175 ---FDYPDKVELRG------------------YKPTYK-GNPQQIKRAAELIMKAERPII 212
Query: 505 IIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH-------ALQ 557
G G S A EL+ + P T MG G +P HP + H A+Q
Sbjct: 213 YAGGGVISSNASEELVELAETIPAPVTTTLMGIGAIPTEHPLSLGMLGMHGTKYANYAIQ 272
Query: 558 NADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQ 617
+DL++ +GAR + + G+ F N KII +D++ E+ +V+ V I D + ++
Sbjct: 273 ESDLIIAVGARFDDRVT-GKLASFAPNAKIIHIDIDPAEISKNVKVDVPIVGDAKQVLKS 331
Query: 618 LKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLP 654
L + + + R + W +E LK + V P
Sbjct: 332 LIKYVQYCDRKEWLDKINQWKKEYPLKYKEREDVIKP 368
Score = 75.2 bits (185), Expect = 7e-14
Identities = 44/163 (26%), Positives = 85/163 (52%), Gaps = 2/163 (1%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIG 66
E+++ + I + L+ +G+E +FG G +I + + +I +R+EQAA +AA
Sbjct: 6 EKMTGARAIIKCLEKEGVEVIFGYPGGAIIPVYDELYDSDLRHILVRHEQAAAHAADGYA 65
Query: 67 YLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELA 126
T K GVC+ SGPG + G+A A ++ P++ + G + G FQE +
Sbjct: 66 RATGKVGVCVATSGPGATNLVTGIATAYMDSVPIVALTGQVPRSMIGNDAFQEADITGIT 125
Query: 127 RPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLPR 169
P K++ + + + +++A +++ G+PG L+ +LP+
Sbjct: 126 MPITKHNYLVQDAKDLPRIIKEAFHIASTGRPGPVLI--DLPK 166
Score = 50.9 bits (122), Expect = 3e-06
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 27/141 (19%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PR + +G GTMG G A+ A + P K V+ + GD +F + EL T V+ +
Sbjct: 404 PRTFITSGGLGTMGYGFPAAIGAKVG----KPDKTVIDIAGDGSFQMNSQELATAVQNDI 459
Query: 228 PVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFG 287
PVI+ I+NN G+ W ++ YD+ S I ++ F + +G
Sbjct: 460 PVIVAILNN-----GYLGMVRQWQELF--------YDKRYSHT-CIKGSVDFVKLAEAYG 505
Query: 288 IVGI---------PVIELAMA 299
+G+ P IE A+A
Sbjct: 506 ALGLRVEKPSEVRPAIEEAVA 526
>gnl|CDD|180578 PRK06466, PRK06466, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 134 bits (338), Expect = 1e-32
Identities = 99/385 (25%), Positives = 174/385 (45%), Gaps = 40/385 (10%)
Query: 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMAC-QQEGIHYIGMRNEQAACYAAQAI 323
E LS +++ +AL+ +G+EY++G G V+ + A +Q+ + +I +R+EQAA + A
Sbjct: 2 ELLSGAEMLVRALRDEGVEYIYGYPGGAVLHIYDALFKQDKVEHILVRHEQAATHMADGY 61
Query: 324 GYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVEL 383
T K GV LV SGPG + G+A A ++ PM+V+ G G FQE V +
Sbjct: 62 ARATGKTGVVLVTSGPGATNAITGIATAYMDSIPMVVLSGQVPSTLIGEDAFQETDMVGI 121
Query: 384 ARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKV 443
+RP K+S + I + ++KA ++ G+PG +D P ++ P K
Sbjct: 122 SRPIVKHSFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKDMTN---------PAEKF 172
Query: 444 LEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503
+P +L+ S P + ++++A ++L AK P+
Sbjct: 173 ---EYEYPKKVKLRSYS------------------PAVRGHS-GQIRKAVEMLLAAKRPV 210
Query: 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH-------AL 556
+ G G A L + NLP T MG G P + H A+
Sbjct: 211 IYSGGGVVLGNASALLTELAHLLNLPVTNTLMGLGGFPGTDRQFLGMLGMHGTYEANMAM 270
Query: 557 QNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQ 616
+AD++L +GAR + + G +F N KII +D++ + +++A + I V +
Sbjct: 271 HHADVILAVGARFDDRVTNG-PAKFCPNAKIIHIDIDPASISKTIKADIPIVGPVESVLT 329
Query: 617 QLKQMLSHTQRNWSFSATSPWWQEL 641
++ +L A + WW+++
Sbjct: 330 EMLAILKEIGEKPDKEALAAWWKQI 354
Score = 96.7 bits (241), Expect = 1e-20
Identities = 52/154 (33%), Positives = 86/154 (55%), Gaps = 1/154 (0%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMAC-QQEGIHYIGMRNEQAACYAAQAI 65
E LS +++ +AL+ +G+EY++G G V+ + A +Q+ + +I +R+EQAA + A
Sbjct: 2 ELLSGAEMLVRALRDEGVEYIYGYPGGAVLHIYDALFKQDKVEHILVRHEQAATHMADGY 61
Query: 66 GYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVEL 125
T K GV LV SGPG + G+A A ++ PM+V+ G G FQE V +
Sbjct: 62 ARATGKTGVVLVTSGPGATNAITGIATAYMDSIPMVVLSGQVPSTLIGEDAFQETDMVGI 121
Query: 126 ARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
+RP K+S + I + ++KA ++ G+PG
Sbjct: 122 SRPIVKHSFMVKHASEIPEIIKKAFYIAQSGRPG 155
Score = 57.8 bits (140), Expect = 2e-08
Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 28/156 (17%)
Query: 142 IGQHVEKAVRLSTFGKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGK 201
+GQH A + F KP +++G GTMG GL A+ L P +
Sbjct: 397 VGQHQMFAAQYYKFNKP----------NRWINSGGLGTMGFGLPAAMGVKLAF----PDQ 442
Query: 202 RVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSE 261
V CV G+ + + EL T ++Y LPV ++ + NNG G + W D+ + S
Sbjct: 443 DVACVTGEGSIQMNIQELSTCLQYGLPVKIINL-NNGALGMVRQ----WQDMQYEGRHSH 497
Query: 262 DYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELA 297
Y E L +A+A +G VGI + +L
Sbjct: 498 SYMESLPDFVKLAEA---------YGHVGIRITDLK 524
>gnl|CDD|214363 CHL00099, ilvB, acetohydroxyacid synthase large subunit.
Length = 585
Score = 133 bits (337), Expect = 2e-32
Identities = 99/378 (26%), Positives = 170/378 (44%), Gaps = 51/378 (13%)
Query: 281 GIEYVFGIVG---IPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTKKPGVCLVV 336
G++++FG G +P+ + A +++G I +I +R+EQ A +AA T K GVC
Sbjct: 24 GVKHIFGYPGGAILPIYDELYAWEKKGLIKHILVRHEQGAAHAADGYARSTGKVGVCFAT 83
Query: 337 SGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPN 396
SGPG + G+A AQ++ P+LVI G + G FQE + P K+S +
Sbjct: 84 SGPGATNLVTGIATAQMDSVPLLVITGQVGRAFIGTDAFQEVDIFGITLPIVKHSYVVRD 143
Query: 397 IHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAEL 456
I + V +A ++ G+PG +D P ++ ++ + P + L I +
Sbjct: 144 ARDISRIVAEAFYIAKHGRPGPVLIDIPKDVGLEKFDYYPPEP-GNTIIKILGCRPIYKP 202
Query: 457 KQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVIIGKGAAYSQAE 516
I ++QA++LIL++ PL+ +G GA S A
Sbjct: 203 T----------------------------IKRIEQAAKLILQSSQPLLYVGGGAIISDAH 234
Query: 517 TELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV-------SAARTHALQNADLVLLLGARL 569
E+ + +P T MGKG+ + HP C+ +A A+ DL++ LGAR
Sbjct: 235 QEITELAELYKIPVTTTLMGKGIFDEDHPLCLGMLGMHGTAYANFAVSECDLLIALGAR- 293
Query: 570 NWILHF-----GRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSH 624
F G+ F N ++I +D++ E+ + VAI DV+ +Q+L ++L +
Sbjct: 294 -----FDDRVTGKLDEFACNAQVIHIDIDPAEIGKNRIPQVAIVGDVKKVLQELLELLKN 348
Query: 625 TQRNWSFSATSPWWQELK 642
+ T W + +
Sbjct: 349 SPNLLESEQTQAWRERIN 366
Score = 69.0 bits (169), Expect = 9e-12
Identities = 46/141 (32%), Positives = 74/141 (52%), Gaps = 4/141 (2%)
Query: 23 GIEYVFGIVG---IPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTKKPGVCLVV 78
G++++FG G +P+ + A +++G I +I +R+EQ A +AA T K GVC
Sbjct: 24 GVKHIFGYPGGAILPIYDELYAWEKKGLIKHILVRHEQGAAHAADGYARSTGKVGVCFAT 83
Query: 79 SGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPN 138
SGPG + G+A AQ++ P+LVI G + G FQE + P K+S +
Sbjct: 84 SGPGATNLVTGIATAQMDSVPLLVITGQVGRAFIGTDAFQEVDIFGITLPIVKHSYVVRD 143
Query: 139 IHLIGQHVEKAVRLSTFGKPG 159
I + V +A ++ G+PG
Sbjct: 144 ARDISRIVAEAFYIAKHGRPG 164
Score = 53.9 bits (130), Expect = 4e-07
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PR L + GTMG GL A+ A + P + V+C+ GD++F + EL T+ +Y L
Sbjct: 420 PRKWLSSAGLGTMGYGLPAAIGAQIA----HPNELVICISGDASFQMNLQELGTIAQYNL 475
Query: 228 PVILVIVNN 236
P+ ++I+NN
Sbjct: 476 PIKIIIINN 484
>gnl|CDD|180919 PRK07282, PRK07282, acetolactate synthase catalytic subunit;
Reviewed.
Length = 566
Score = 133 bits (335), Expect = 3e-32
Identities = 94/363 (25%), Positives = 168/363 (46%), Gaps = 42/363 (11%)
Query: 264 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMAC-QQEGIHYIGMRNEQAACYAAQA 322
+ S + ++ + L+ G++ +FG G V+ L A EGI +I R+EQ A + A+
Sbjct: 7 ESPKSGSDLVLETLRDLGVDTIFGYPGGAVLPLYDAIYNFEGIRHILARHEQGALHEAEG 66
Query: 323 IGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVE 382
T K GV +V SGPG + G+A+A + P+LV G A+ G FQE V
Sbjct: 67 YAKSTGKLGVAVVTSGPGATNAITGIADAMSDSVPLLVFTGQVARAGIGKDAFQEADIVG 126
Query: 383 LARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPK 442
+ P KY+ + I + + +AV ++T G+PG +D P ++ A T
Sbjct: 127 ITMPITKYNYQIRETADIPRIITEAVHIATTGRPGPVVIDLPKDVSALE--------TDF 178
Query: 443 VLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAP 502
+ +P + P + + + ++ K+ LKQ S+ AK P
Sbjct: 179 IYDPEVNLPSYQPTLEPNDMQIK---------KI------------LKQLSK----AKKP 213
Query: 503 LVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH-------A 555
+++ G G Y++A TEL +F + +P + T +G+G + +HP + H A
Sbjct: 214 VILAGGGINYAEAATELNAFAERYQIPVVTTLLGQGTIATSHPLFLGMGGMHGSYAANIA 273
Query: 556 LQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTV 615
+ AD ++ +G+R + L G F N K+ +D++ E+ ++ + + D + +
Sbjct: 274 MTEADFMINIGSRFDDRL-TGNPKTFAKNAKVAHIDIDPAEIGKIIKTDIPVVGDAKKAL 332
Query: 616 QQL 618
Q L
Sbjct: 333 QML 335
Score = 78.7 bits (194), Expect = 6e-15
Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 1/155 (0%)
Query: 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMAC-QQEGIHYIGMRNEQAACYAAQA 64
+ S + ++ + L+ G++ +FG G V+ L A EGI +I R+EQ A + A+
Sbjct: 7 ESPKSGSDLVLETLRDLGVDTIFGYPGGAVLPLYDAIYNFEGIRHILARHEQGALHEAEG 66
Query: 65 IGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVE 124
T K GV +V SGPG + G+A+A + P+LV G A+ G FQE V
Sbjct: 67 YAKSTGKLGVAVVTSGPGATNAITGIADAMSDSVPLLVFTGQVARAGIGKDAFQEADIVG 126
Query: 125 LARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
+ P KY+ + I + + +AV ++T G+PG
Sbjct: 127 ITMPITKYNYQIRETADIPRIITEAVHIATTGRPG 161
Score = 42.5 bits (100), Expect = 0.001
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 169 RHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLP 228
R + +G GTMG G+ A+ A + P K V+ GD F + EL L Y++P
Sbjct: 409 RQLVTSGGLGTMGFGIPAAIGAKIA----NPDKEVILFVGDGGFQMTNQELAILNIYKVP 464
Query: 229 VILVIVNNNGI 239
+ +V++NN+ +
Sbjct: 465 IKVVMLNNHSL 475
>gnl|CDD|215261 PLN02470, PLN02470, acetolactate synthase.
Length = 585
Score = 132 bits (333), Expect = 7e-32
Identities = 104/387 (26%), Positives = 174/387 (44%), Gaps = 46/387 (11%)
Query: 264 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQA 322
DE ++ +AL+ +G++ VF G +E+ A + I + R+EQ +AA+
Sbjct: 10 DEPRKGADILVEALEREGVDTVFAYPGGASMEIHQALTRSNCIRNVLCRHEQGEVFAAEG 69
Query: 323 IGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVE 382
+ K GVC+ SGPG + G+A+A ++ P++ I G + G FQE P VE
Sbjct: 70 YAKASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVE 129
Query: 383 LARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPK 442
+ R K++ ++ I + + +A L++ G+PG +D P + I Q VP
Sbjct: 130 VTRSITKHNYLVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKD-----IQQQLAVP--- 181
Query: 443 VLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAP 502
+ PG ++ P P ++L+Q RLI E+K P
Sbjct: 182 NWNQPMKLPGYL-----------SRLP------------KPPEKSQLEQIVRLISESKRP 218
Query: 503 LVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH-------A 555
+V +G G + EL FV +P T MG G P + + H A
Sbjct: 219 VVYVGGGC--LNSSEELREFVELTGIPVASTLMGLGAFPASDELSLQMLGMHGTVYANYA 276
Query: 556 LQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTV 615
+ +ADL+L G R + + G+ F S I+ +D++ E+ + Q V++ +DV+L +
Sbjct: 277 VDSADLLLAFGVRFDDRVT-GKLEAFASRASIVHIDIDPAEIGKNKQPHVSVCADVKLAL 335
Query: 616 QQLKQML-SHTQRNWSFSATSPWWQEL 641
Q L ++L + FSA W EL
Sbjct: 336 QGLNKLLEERKAKRPDFSA---WRAEL 359
Score = 77.1 bits (190), Expect = 2e-14
Identities = 46/159 (28%), Positives = 82/159 (51%), Gaps = 1/159 (0%)
Query: 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQA 64
DE ++ +AL+ +G++ VF G +E+ A + I + R+EQ +AA+
Sbjct: 10 DEPRKGADILVEALEREGVDTVFAYPGGASMEIHQALTRSNCIRNVLCRHEQGEVFAAEG 69
Query: 65 IGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVE 124
+ K GVC+ SGPG + G+A+A ++ P++ I G + G FQE P VE
Sbjct: 70 YAKASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVE 129
Query: 125 LARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLL 163
+ R K++ ++ I + + +A L++ G+PG L+
Sbjct: 130 VTRSITKHNYLVMDVEDIPRVIREAFFLASSGRPGPVLV 168
Score = 47.4 bits (113), Expect = 3e-05
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PR L +G G MG GL A+ AA P VV + GD +F + EL T+ L
Sbjct: 416 PRRWLTSGGLGAMGFGLPAAIGAAAA----NPDAIVVDIDGDGSFIMNIQELATIHVENL 471
Query: 228 PVILVIVNN 236
PV ++++NN
Sbjct: 472 PVKIMVLNN 480
>gnl|CDD|236098 PRK07789, PRK07789, acetolactate synthase 1 catalytic subunit;
Validated.
Length = 612
Score = 128 bits (324), Expect = 1e-30
Identities = 98/392 (25%), Positives = 176/392 (44%), Gaps = 56/392 (14%)
Query: 265 EELSANQVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQ 321
E ++ Q + ++L+ G++ VFGI G +PV + + + ++ +R+EQ A +AA+
Sbjct: 29 ERMTGAQAVVRSLEELGVDVVFGIPGGAILPVYDPLFDSTK--VRHVLVRHEQGAGHAAE 86
Query: 322 AIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQV 381
T + GVC+ SGPG + +A+A ++ P++ I G + G FQE V
Sbjct: 87 GYAQATGRVGVCMATSGPGATNLVTPIADANMDSVPVVAITGQVGRGLIGTDAFQEADIV 146
Query: 382 ELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTP 441
+ P K++ + I + + +A +++ G+PG +D P + L Q+
Sbjct: 147 GITMPITKHNFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKDAL-----QA------ 195
Query: 442 KVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKA 501
+ T WP ++ L P V +P ++++A++LI A+
Sbjct: 196 ---QTTFSWP--------PRMDLPGYRP------VTKPHG-----KQIREAAKLIAAARR 233
Query: 502 PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV-------SAARTH 554
P++ +G G ++A EL +P + T M +G PD+HP + + A
Sbjct: 234 PVLYVGGGVIRAEASAELRELAELTGIPVVTTLMARGAFPDSHPQHLGMPGMHGTVAAVA 293
Query: 555 ALQNADLVLLLGARLNWILHF-----GRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQS 609
ALQ +DL++ LGAR F G+ F + K+I D++ E+ + A V I
Sbjct: 294 ALQRSDLLIALGAR------FDDRVTGKLDSFAPDAKVIHADIDPAEIGKNRHADVPIVG 347
Query: 610 DVRLTVQQLKQMLSHTQRNWSFSATSPWWQEL 641
DV+ + +L L + WW L
Sbjct: 348 DVKEVIAELIAALRAEHAAGGKPDLTAWWAYL 379
Score = 63.8 bits (156), Expect = 3e-10
Identities = 42/156 (26%), Positives = 81/156 (51%), Gaps = 5/156 (3%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQ 63
E ++ Q + ++L+ G++ VFGI G +PV + + + ++ +R+EQ A +AA+
Sbjct: 29 ERMTGAQAVVRSLEELGVDVVFGIPGGAILPVYDPLFDSTK--VRHVLVRHEQGAGHAAE 86
Query: 64 AIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQV 123
T + GVC+ SGPG + +A+A ++ P++ I G + G FQE V
Sbjct: 87 GYAQATGRVGVCMATSGPGATNLVTPIADANMDSVPVVAITGQVGRGLIGTDAFQEADIV 146
Query: 124 ELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
+ P K++ + I + + +A +++ G+PG
Sbjct: 147 GITMPITKHNFLVTDADDIPRVIAEAFHIASTGRPG 182
Score = 37.3 bits (87), Expect = 0.043
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PR L++G GTMG +A+ AA+ P K V + GD F + EL T +
Sbjct: 437 PRTWLNSGGLGTMG----YAVPAAMGAKVGRPDKEVWAIDGDGCFQMTNQELATCAIEGI 492
Query: 228 PVILVIVNN 236
P+ + ++NN
Sbjct: 493 PIKVALINN 501
>gnl|CDD|235766 PRK06276, PRK06276, acetolactate synthase catalytic subunit;
Reviewed.
Length = 586
Score = 127 bits (320), Expect = 3e-30
Identities = 92/390 (23%), Positives = 161/390 (41%), Gaps = 55/390 (14%)
Query: 271 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKP 330
+ I +AL+ +G++ +FG G ++ A + +I R+EQAA +AA + K
Sbjct: 5 EAIIKALEAEGVKIIFGYPGGALLPFYDALYDSDLIHILTRHEQAAAHAADGYARASGKV 64
Query: 331 GVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKY 390
GVC+ SGPG + G+A A + P++ + G G FQE + + P K+
Sbjct: 65 GVCVATSGPGATNLVTGIATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGIFMPITKH 124
Query: 391 SARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEPTLPW 450
+ + I + A ++ G+PG ++D P ++ + P P +
Sbjct: 125 NFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKDVQEGEL-DLEKYPIPA----KIDL 179
Query: 451 PGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVIIGKGA 510
PG L ++K+A+ LI EA+ P+++ G G
Sbjct: 180 PGYKPTTFGHPL-------------------------QIKKAAELIAEAERPVILAGGGV 214
Query: 511 AYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH-------ALQNADLVL 563
S A EL+ +P T MGKG P+ HP + H ++ +D+++
Sbjct: 215 IISGASEELIELSELVKIPVCTTLMGKGAFPEDHPLALGMVGMHGTKAANYSVTESDVLI 274
Query: 564 LLGARLNWILHF-----GRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQL 618
+G R F G F N KII +D++ E+ +V+ V I D + L
Sbjct: 275 AIGCR------FSDRTTGDISSFAPNAKIIHIDIDPAEIGKNVRVDVPIVGDAKNV---L 325
Query: 619 KQMLSHTQRNWSFSATSPWW---QELKLKC 645
+ +L+ + S W ++LK +
Sbjct: 326 RDLLAELMKK-EIKNKSEWLERVKKLKKES 354
Score = 74.4 bits (183), Expect = 1e-13
Identities = 40/147 (27%), Positives = 70/147 (47%)
Query: 13 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKP 72
+ I +AL+ +G++ +FG G ++ A + +I R+EQAA +AA + K
Sbjct: 5 EAIIKALEAEGVKIIFGYPGGALLPFYDALYDSDLIHILTRHEQAAAHAADGYARASGKV 64
Query: 73 GVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKY 132
GVC+ SGPG + G+A A + P++ + G G FQE + + P K+
Sbjct: 65 GVCVATSGPGATNLVTGIATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGIFMPITKH 124
Query: 133 SARPPNIHLIGQHVEKAVRLSTFGKPG 159
+ + I + A ++ G+PG
Sbjct: 125 NFQIKKPEEIPEIFRAAFEIAKTGRPG 151
Score = 55.1 bits (133), Expect = 2e-07
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PR + +G GTMG G A+ A + P V+ + GD F + EL T+ Y +
Sbjct: 409 PRSFISSGGLGTMGFGFPAAIGAKVAK----PDANVIAITGDGGFLMNSQELATIAEYDI 464
Query: 228 PVILVIVNN 236
PV++ I +N
Sbjct: 465 PVVICIFDN 473
>gnl|CDD|181458 PRK08527, PRK08527, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 563
Score = 124 bits (312), Expect = 2e-29
Identities = 97/385 (25%), Positives = 174/385 (45%), Gaps = 46/385 (11%)
Query: 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMAC-QQEGIHYIGMRNEQAACYAAQAIG 324
+LS +Q++ +ALK +G++ VFG G ++ + +Q +I R+EQAA +AA
Sbjct: 2 KLSGSQMVCEALKEEGVKVVFGYPGGAILNIYDEIYKQNYFKHILTRHEQAAVHAADGYA 61
Query: 325 YLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELA 384
+ K GV +V SGPG + G+A A ++ P+++I G G FQE V ++
Sbjct: 62 RASGKVGVAIVTSGPGFTNAVTGLATAYMDSIPLVLISGQVPNSLIGTDAFQEIDAVGIS 121
Query: 385 RPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVL 444
RP K++ +I + + +++A ++ G+PG ++D P ++ A
Sbjct: 122 RPCVKHNYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKDVTAT-------------- 167
Query: 445 EPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLV 504
+ E + ++ L+ P ++K+A+ I EAK PL
Sbjct: 168 --------LGEFEYPKEISLKTYKPTYKGNS-----------RQIKKAAEAIKEAKKPLF 208
Query: 505 IIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH-------ALQ 557
+G GA S A E+ V +P + T M +GV+ P + H A+
Sbjct: 209 YLGGGAILSNASEEIRELVKKTGIPAVETLMARGVLRSDDPLLLGMLGMHGSYAANMAMS 268
Query: 558 NADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQ 617
DL++ LGAR + + G+ F + KII VD++ + V A I D++ +++
Sbjct: 269 ECDLLISLGARFDDRVT-GKLSEFAKHAKIIHVDIDPSSISKIVNADYPIVGDLKNVLKE 327
Query: 618 LKQMLSHTQRNWSFSATSPWWQELK 642
+ + L + + W + LK
Sbjct: 328 MLEELK----EENPTTYKEWREILK 348
Score = 75.9 bits (187), Expect = 5e-14
Identities = 47/153 (30%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMAC-QQEGIHYIGMRNEQAACYAAQAIG 66
+LS +Q++ +ALK +G++ VFG G ++ + +Q +I R+EQAA +AA
Sbjct: 2 KLSGSQMVCEALKEEGVKVVFGYPGGAILNIYDEIYKQNYFKHILTRHEQAAVHAADGYA 61
Query: 67 YLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELA 126
+ K GV +V SGPG + G+A A ++ P+++I G G FQE V ++
Sbjct: 62 RASGKVGVAIVTSGPGFTNAVTGLATAYMDSIPLVLISGQVPNSLIGTDAFQEIDAVGIS 121
Query: 127 RPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
RP K++ +I + + +++A ++ G+PG
Sbjct: 122 RPCVKHNYLVKSIEELPRILKEAFYIARSGRPG 154
Score = 56.3 bits (136), Expect = 6e-08
Identities = 31/72 (43%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 166 NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRY 225
N PR +G GTMG GL AL A L P K V+ GD + + EL T V Y
Sbjct: 402 NYPRQLATSGGLGTMGYGLPAALGAKLAV----PDKVVINFTGDGSILMNIQELMTAVEY 457
Query: 226 RLPVILVIVNNN 237
++PVI +I+NNN
Sbjct: 458 KIPVINIILNNN 469
>gnl|CDD|180569 PRK06456, PRK06456, acetolactate synthase catalytic subunit;
Reviewed.
Length = 572
Score = 123 bits (311), Expect = 3e-29
Identities = 85/377 (22%), Positives = 167/377 (44%), Gaps = 51/377 (13%)
Query: 268 SANQVIAQALKFQGIEYVFGIVGIPVIELAMA----CQQEGIHYIGMRNEQAACYAAQAI 323
+ +++ +LK +G++ +FGI G+ +++ A + ++ MR+EQAA +AA
Sbjct: 3 TGARILVDSLKREGVKVIFGIPGLSNMQIYDAFVEDLANGELRHVLMRHEQAAAHAADGY 62
Query: 324 GYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVEL 383
+ PGVC SGPG + G+ A + P++ I G + G FQE + +
Sbjct: 63 ARASGVPGVCTATSGPGTTNLVTGLITAYWDSSPVIAITGQVPRSVMGKMAFQEADAMGV 122
Query: 384 ARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKV 443
KY I I Q ++ A ++T G+PG +D P ++ +++ +
Sbjct: 123 FENVTKYVIGIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDIFYEKMEE--------- 173
Query: 444 LEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIA---ELKQASRLILEAK 500
+ WP + PLV + +P LK+A+ +++ A+
Sbjct: 174 ----IKWP---------------EKPLVKGYR------DFPTRIDRLALKKAAEILINAE 208
Query: 501 APLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------AR 552
P++++G G +S A E+L ++P + T GK +P HP A
Sbjct: 209 RPIILVGTGVVWSNATPEVLELAELLHIPIVSTFPGKTAIPHDHPLYFGPMGYYGRAEAS 268
Query: 553 THALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVR 612
AL+ +D +L++GAR + ++ K I V+++ + +++ V I + +
Sbjct: 269 MAALE-SDAMLVVGARFSDRTFTSYDEMVETRKKFIMVNIDPTDGEKAIKVDVGIYGNAK 327
Query: 613 LTVQQL-KQMLSHTQRN 628
+ +++L K + Q+
Sbjct: 328 IILRELIKAITELGQKR 344
Score = 81.8 bits (202), Expect = 8e-16
Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 4/154 (2%)
Query: 10 SANQVIAQALKFQGIEYVFGIVGIPVIELAMA----CQQEGIHYIGMRNEQAACYAAQAI 65
+ +++ +LK +G++ +FGI G+ +++ A + ++ MR+EQAA +AA
Sbjct: 3 TGARILVDSLKREGVKVIFGIPGLSNMQIYDAFVEDLANGELRHVLMRHEQAAAHAADGY 62
Query: 66 GYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVEL 125
+ PGVC SGPG + G+ A + P++ I G + G FQE + +
Sbjct: 63 ARASGVPGVCTATSGPGTTNLVTGLITAYWDSSPVIAITGQVPRSVMGKMAFQEADAMGV 122
Query: 126 ARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
KY I I Q ++ A ++T G+PG
Sbjct: 123 FENVTKYVIGIKRIDEIPQWIKNAFYIATTGRPG 156
Score = 47.1 bits (112), Expect = 4e-05
Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PR L + GTMG GL A+ A L P K VV + GD +F +G L T V +
Sbjct: 411 PRTFLTSSGMGTMGFGLPAAMGAKLA----RPDKVVVDLDGDGSFLMTGTNLATAVDEHI 466
Query: 228 PVILVIVNN 236
PVI VI +N
Sbjct: 467 PVISVIFDN 475
>gnl|CDD|181285 PRK08199, PRK08199, thiamine pyrophosphate protein; Validated.
Length = 557
Score = 119 bits (300), Expect = 9e-28
Identities = 96/371 (25%), Positives = 155/371 (41%), Gaps = 69/371 (18%)
Query: 271 QVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLT 327
Q++ AL+ G+E VF + G + V++ A+ + I I R E A A+A G LT
Sbjct: 12 QILVDALRANGVERVFCVPGESYLAVLD-ALH-DETDIRVIVCRQEGGAAMMAEAYGKLT 69
Query: 328 KKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR-- 385
+PG+C V GPG + G+ A + PM++ G A+D FQE ++ R
Sbjct: 70 GRPGICFVTRGPGATNASIGVHTAFQDSTPMILFVGQVARDFREREAFQE---IDYRRMF 126
Query: 386 -PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVL 444
P K+ A + I + V +A ++T G+PG L P ++L++ A VP
Sbjct: 127 GPMAKWVAEIDDAARIPELVSRAFHVATSGRPGPVVLALPEDVLSET----AEVPDAPPY 182
Query: 445 EPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLV 504
PG A+L + ++L+ A+ PLVI+G
Sbjct: 183 RRVAAAPGAADLARLAELLARAERPLVILG------------------------------ 212
Query: 505 IIGKGAAYS-QAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVS----------AART 553
G+ ++ A +L +F + LP + + + HPN AAR
Sbjct: 213 ----GSGWTEAAVADLRAFAERWGLPVACAFRRQDLFDNRHPNYAGDLGLGINPALAAR- 267
Query: 554 HALQNADLVLLLGARLNWILHFG----RAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQS 609
++ ADLVL +G RL + G P + ++ V +AEEL + +AI +
Sbjct: 268 --IREADLVLAVGTRLGEVTTQGYTLLDIPVPRQ--TLVHVHPDAEELGRVYRPDLAIVA 323
Query: 610 DVRLTVQQLKQ 620
D L
Sbjct: 324 DPAAFAAALAA 334
Score = 75.7 bits (187), Expect = 6e-14
Identities = 48/153 (31%), Positives = 76/153 (49%), Gaps = 11/153 (7%)
Query: 13 QVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLT 69
Q++ AL+ G+E VF + G + V++ A+ + I I R E A A+A G LT
Sbjct: 12 QILVDALRANGVERVFCVPGESYLAVLD-ALH-DETDIRVIVCRQEGGAAMMAEAYGKLT 69
Query: 70 KKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR-- 127
+PG+C V GPG + G+ A + PM++ G A+D FQE ++ R
Sbjct: 70 GRPGICFVTRGPGATNASIGVHTAFQDSTPMILFVGQVARDFREREAFQE---IDYRRMF 126
Query: 128 -PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
P K+ A + I + V +A ++T G+PG
Sbjct: 127 GPMAKWVAEIDDAARIPELVSRAFHVATSGRPG 159
Score = 66.8 bits (164), Expect = 4e-11
Identities = 34/68 (50%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Query: 174 AGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVI 233
A T G+MG GL A+AA L P + VV GD F +G EL T V+Y LP+I VI
Sbjct: 411 APTSGSMGYGLPAAIAAKLL----FPERTVVAFAGDGCFLMNGQELATAVQYGLPII-VI 465
Query: 234 VNNNGIYG 241
V NNG+YG
Sbjct: 466 VVNNGMYG 473
>gnl|CDD|132497 TIGR03457, sulphoacet_xsc, sulfoacetaldehyde acetyltransferase.
Members of this protein family are sulfoacetaldehyde
acetyltransferase, an enzyme of taurine utilization.
Taurine, or 2-aminoethanesulfonate, can be used by
bacteria as a source of carbon, nitrogen, and sulfur
[Central intermediary metabolism, Other].
Length = 579
Score = 119 bits (299), Expect = 1e-27
Identities = 90/396 (22%), Positives = 155/396 (39%), Gaps = 61/396 (15%)
Query: 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY 325
+++ ++ + L G+ + FGI+G ++ GI +I + +EQ A + A
Sbjct: 1 KMTPSEAFVEVLVANGVTHAFGIMGSAFMDAMDLFPPAGIRFIPVVHEQGAGHMADGFAR 60
Query: 326 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 385
+T + + + +GPG+ + +A A P++++ G+GGFQE Q+ + +
Sbjct: 61 VTGRMSMVIGQNGPGVTNCVTAIAAAYWAHTPVVIVTPEAGTKTIGLGGFQEADQLPMFQ 120
Query: 386 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLE 445
+ KY + + + + + + G + L+ P + I+ P
Sbjct: 121 EFTKYQGHVRHPSRMAEVLNRCFERAWREM-GPAQLNIPRDYFYGEIDVEIPRPVR---- 175
Query: 446 PTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505
L+ A G L QA+RL+ EAK P++I
Sbjct: 176 ------------------LDRGA---------------GGATSLAQAARLLAEAKFPVII 202
Query: 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV-------SAARTHALQN 558
G G A E + P + + + P +HP V S A + +
Sbjct: 203 SGGGVVMGDAVEECKALAERLGAPVVNSYLHNDSFPASHPLWVGPLGYQGSKAAMKLISD 262
Query: 559 ADLVLLLGARLNWILHFGRAPR-----FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRL 613
AD+VL LG RL FG P+ + N KIIQVD NA+ + + V I D +
Sbjct: 263 ADVVLALGTRLG---PFGTLPQYGIDYWPKNAKIIQVDANAKMIGLVKKVTVGICGDAKA 319
Query: 614 TVQQLKQML-------SHTQRNWSFSAT-SPWWQEL 641
++ Q L + +R A S W QEL
Sbjct: 320 AAAEILQRLAGKAGDANRAERKAKIQAERSAWEQEL 355
Score = 70.3 bits (172), Expect = 3e-12
Identities = 29/144 (20%), Positives = 66/144 (45%)
Query: 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY 67
+++ ++ + L G+ + FGI+G ++ GI +I + +EQ A + A
Sbjct: 1 KMTPSEAFVEVLVANGVTHAFGIMGSAFMDAMDLFPPAGIRFIPVVHEQGAGHMADGFAR 60
Query: 68 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 127
+T + + + +GPG+ + +A A P++++ G+GGFQE Q+ + +
Sbjct: 61 VTGRMSMVIGQNGPGVTNCVTAIAAAYWAHTPVVIVTPEAGTKTIGLGGFQEADQLPMFQ 120
Query: 128 PYCKYSARPPNIHLIGQHVEKAVR 151
+ KY + + + + +
Sbjct: 121 EFTKYQGHVRHPSRMAEVLNRCFE 144
Score = 54.9 bits (132), Expect = 2e-07
Identities = 39/147 (26%), Positives = 57/147 (38%), Gaps = 27/147 (18%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PR L +FG G + A + P + VV GD A+G S E+ T VR+ +
Sbjct: 420 PRKFLAPMSFGNCGYAFPTIIGAKIAA----PDRPVVAYAGDGAWGMSMNEIMTAVRHDI 475
Query: 228 PVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFG 287
PV V+ N W +K N + Y+ + + L F GI G
Sbjct: 476 PVTAVVFRN-----------RQWG--AEKKNQVDFYNNRFVGTE-LESELSFAGIADAMG 521
Query: 288 IVGI---------PVIELAMACQQEGI 305
G+ P ++ A+A Q EG
Sbjct: 522 AKGVVVDKPEDVGPALKKAIAAQAEGK 548
>gnl|CDD|236380 PRK09107, PRK09107, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 595
Score = 119 bits (299), Expect = 1e-27
Identities = 101/396 (25%), Positives = 177/396 (44%), Gaps = 44/396 (11%)
Query: 256 KSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMAC-QQEGIHYIGMRNEQ 314
+ S +++ +++ QALK QG+E++FG G V+ + QQ+ I +I +R+EQ
Sbjct: 1 SAQKSHM-PRQMTGAEMVVQALKDQGVEHIFGYPGGAVLPIYDEIFQQDDIQHILVRHEQ 59
Query: 315 AACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGG 374
A +AA+ T KPGV LV SGPG + + +A ++ P++ I G G
Sbjct: 60 GAGHAAEGYARSTGKPGVVLVTSGPGATNAVTPLQDALMDSIPLVCITGQVPTHLIGSDA 119
Query: 375 FQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQ 434
FQEC V + RP K++ +++ + + + +A ++T G+PG +D P ++ Q
Sbjct: 120 FQECDTVGITRPCTKHNWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDV------Q 173
Query: 435 SALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASR 494
A T P A + + Q ++ A + +A
Sbjct: 174 FA--------TGTYTPPQKAPVHVSYQPKVKGDA------------------EAITEAVE 207
Query: 495 LILEAKAPLVIIGKGAAYSQAE-TELL-SFVNSFNLPFLPTPMGKGVVPDAHPNCVSAAR 552
L+ AK P++ G G S E + LL V P T MG G P + N +
Sbjct: 208 LLANAKRPVIYSGGGVINSGPEASRLLRELVELTGFPITSTLMGLGAYPASGKNWLGMLG 267
Query: 553 TH-------ALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAV 605
H A+ + D++L +GAR + + GR F N K I +D++ ++ +V+ V
Sbjct: 268 MHGTYEANMAMHDCDVMLCVGARFDDRIT-GRLDAFSPNSKKIHIDIDPSSINKNVRVDV 326
Query: 606 AIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQEL 641
I DV ++ + ++ + A + WW ++
Sbjct: 327 PIIGDVGHVLEDMLRLWKARGKKPDKEALADWWGQI 362
Score = 87.5 bits (217), Expect = 1e-17
Identities = 50/155 (32%), Positives = 87/155 (56%), Gaps = 1/155 (0%)
Query: 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMAC-QQEGIHYIGMRNEQAACYAAQA 64
+++ +++ QALK QG+E++FG G V+ + QQ+ I +I +R+EQ A +AA+
Sbjct: 8 PRQMTGAEMVVQALKDQGVEHIFGYPGGAVLPIYDEIFQQDDIQHILVRHEQGAGHAAEG 67
Query: 65 IGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVE 124
T KPGV LV SGPG + + +A ++ P++ I G G FQEC V
Sbjct: 68 YARSTGKPGVVLVTSGPGATNAVTPLQDALMDSIPLVCITGQVPTHLIGSDAFQECDTVG 127
Query: 125 LARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
+ RP K++ +++ + + + +A ++T G+PG
Sbjct: 128 ITRPCTKHNWLVKDVNDLARVIHEAFHVATSGRPG 162
Score = 48.6 bits (116), Expect = 2e-05
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 18/124 (14%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
P + +G GTMG GL AL + H P V+ + GD++ E+ T V+Y L
Sbjct: 420 PNRWMTSGGLGTMGYGLPAALGVQI--AH--PDALVIDIAGDASIQMCIQEMSTAVQYNL 475
Query: 228 PVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFG 287
PV + I+NN Y G W ++ + +S Y E + +A+A +G
Sbjct: 476 PVKIFILNNQ--YMGM---VRQWQQLLHGNRLSHSYTEAMPDFVKLAEA---------YG 521
Query: 288 IVGI 291
VGI
Sbjct: 522 AVGI 525
>gnl|CDD|131471 TIGR02418, acolac_catab, acetolactate synthase, catabolic.
Acetolactate synthase (EC 2.2.1.6) combines two
molecules of pyruvate to yield 2-acetolactate with the
release of CO2. This reaction may be involved in either
valine biosynthesis (biosynthetic) or conversion of
pyruvate to acetoin and possibly to 2,3-butanediol
(catabolic). The biosynthetic type, described by
TIGR00118, is also capable of forming
acetohydroxybutyrate from pyruvate and 2-oxobutyrate for
isoleucine biosynthesis. The family described here, part
of the same larger family of thiamine
pyrophosphate-dependent enzymes (pfam00205, pfam02776)
is the catabolic form, generally found associated with
in species with acetolactate decarboxylase and usually
found in the same operon. The model may not encompass
all catabolic acetolactate synthases, but rather one
particular clade in the larger TPP-dependent enzyme
family [Energy metabolism, Fermentation].
Length = 539
Score = 117 bits (296), Expect = 2e-27
Identities = 64/204 (31%), Positives = 104/204 (50%), Gaps = 3/204 (1%)
Query: 271 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKP 330
++ L+ QG+ YVFGI G + + A + +GI I +R+EQ A + AQA+G +T KP
Sbjct: 3 DLVVDQLENQGVRYVFGIPGAKIDRVFDALEDKGIELIVVRHEQNAAFMAQAVGRITGKP 62
Query: 331 GVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKY 390
GV LV SGPG + G+A A P++ IGG + Q V L RP KY
Sbjct: 63 GVALVTSGPGCSNLVTGLATANSEGDPVVAIGGQVKRADLLKLTHQSMDNVALFRPITKY 122
Query: 391 SARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEPTLPW 450
SA + + + V A R + GKPG +++ P +++ ++ A+ + P L
Sbjct: 123 SAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDVVDSPVSVKAIPASYA---PKLGA 179
Query: 451 PGIAELKQASQLILEAKAPLVIIG 474
+ + ++ I AK P++++G
Sbjct: 180 APDDAIDEVAEAIQNAKLPVLLLG 203
Score = 95.2 bits (237), Expect = 4e-20
Identities = 58/162 (35%), Positives = 86/162 (53%), Gaps = 2/162 (1%)
Query: 13 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKP 72
++ L+ QG+ YVFGI G + + A + +GI I +R+EQ A + AQA+G +T KP
Sbjct: 3 DLVVDQLENQGVRYVFGIPGAKIDRVFDALEDKGIELIVVRHEQNAAFMAQAVGRITGKP 62
Query: 73 GVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKY 132
GV LV SGPG + G+A A P++ IGG + Q V L RP KY
Sbjct: 63 GVALVTSGPGCSNLVTGLATANSEGDPVVAIGGQVKRADLLKLTHQSMDNVALFRPITKY 122
Query: 133 SARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLPRHRLDA 174
SA + + + V A R + GKPG + + +LP+ +D+
Sbjct: 123 SAEVQDPDALSEVVANAFRAAESGKPGAAFV--SLPQDVVDS 162
Score = 65.9 bits (161), Expect = 7e-11
Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
RH L + T+GV L +A+ AAL P +VV V GD F FS MELET VR +L
Sbjct: 398 ARHLLISNGMQTLGVALPWAIGAALV----RPNTKVVSVSGDGGFLFSSMELETAVRLKL 453
Query: 228 PVILVIVNNNG 238
++ +I N+NG
Sbjct: 454 NIVHIIWNDNG 464
>gnl|CDD|181601 PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit;
Reviewed.
Length = 548
Score = 116 bits (294), Expect = 4e-27
Identities = 101/370 (27%), Positives = 166/370 (44%), Gaps = 65/370 (17%)
Query: 271 QVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY-- 325
Q + AL+ QG++ VFG G +PV + A G+ ++ R+EQ A AA IGY
Sbjct: 5 QWVVHALRAQGVDTVFGYPGGAIMPVYD---ALYDGGVEHLLCRHEQGAAMAA--IGYAR 59
Query: 326 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 385
T K GVC+ SGPG + G+A+A ++ P++ I G + G FQE + L+
Sbjct: 60 ATGKVGVCIATSGPGATNLITGLADALLDSVPVVAITGQVSSPLIGTDAFQEIDVLGLSL 119
Query: 386 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLE 445
K+S ++ + + + +A +++ G+PG +D P ++ Q A L
Sbjct: 120 ACTKHSFLVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKDI------QLAEGELEPHLT 173
Query: 446 PTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505
EP P AEL+QA L+ +AK P++
Sbjct: 174 TVEN----------------------------EPAFP---AAELEQARALLAQAKKPVLY 202
Query: 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV-------SAARTHALQN 558
+G G + A L F+ + +P + T G G V HP + + A A+Q
Sbjct: 203 VGGGVGMAGAVPALREFLAATGMPAVATLKGLGAVEADHPYYLGMLGMHGTKAANLAVQE 262
Query: 559 ADLVLLLGARLNWILHF-----GRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRL 613
DL++ +GAR F G+ F + K+I +D++ E++ QA VA+Q D+
Sbjct: 263 CDLLIAVGAR------FDDRVTGKLNTFAPHAKVIHLDIDPAEINKLRQAHVALQGDLNA 316
Query: 614 TVQQLKQMLS 623
+ L+Q L+
Sbjct: 317 LLPALQQPLN 326
Score = 70.3 bits (173), Expect = 3e-12
Identities = 48/152 (31%), Positives = 80/152 (52%), Gaps = 10/152 (6%)
Query: 13 QVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY-- 67
Q + AL+ QG++ VFG G +PV + A G+ ++ R+EQ A AA IGY
Sbjct: 5 QWVVHALRAQGVDTVFGYPGGAIMPVYD---ALYDGGVEHLLCRHEQGAAMAA--IGYAR 59
Query: 68 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 127
T K GVC+ SGPG + G+A+A ++ P++ I G + G FQE + L+
Sbjct: 60 ATGKVGVCIATSGPGATNLITGLADALLDSVPVVAITGQVSSPLIGTDAFQEIDVLGLSL 119
Query: 128 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
K+S ++ + + + +A +++ G+PG
Sbjct: 120 ACTKHSFLVQSLEELPEIMAEAFEIASSGRPG 151
Score = 56.0 bits (136), Expect = 8e-08
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
P + + + GTMG GL A+ A + P V+CV GD +F + EL T+ R +L
Sbjct: 391 PENFITSSGLGTMGFGLPAAIGAQVAR----PDDTVICVSGDGSFMMNVQELGTIKRKQL 446
Query: 228 PVILVIVNN 236
PV +V+++N
Sbjct: 447 PVKIVLLDN 455
>gnl|CDD|236041 PRK07524, PRK07524, hypothetical protein; Provisional.
Length = 535
Score = 116 bits (293), Expect = 5e-27
Identities = 88/373 (23%), Positives = 154/373 (41%), Gaps = 51/373 (13%)
Query: 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL 326
+ + + + L+ G+E VFGI G+ +EL GI ++ R+EQ A + A +
Sbjct: 2 TTCGEALVRLLEAYGVETVFGIPGVHTVELYRGLAGSGIRHVTPRHEQGAGFMADGYARV 61
Query: 327 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDH--EGIGGFQECP-QVEL 383
+ KPGVC +++GPG+ + M A + PMLVI + +G G E P Q +
Sbjct: 62 SGKPGVCFIITGPGMTNIATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAM 121
Query: 384 ARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKV 443
+S + + + + +A + +P +++ P ++LA L+P P
Sbjct: 122 VAGVAAFSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLDVLAAPA--DHLLPAPPT 179
Query: 444 LEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503
P P P A L QA+ + A+ PL
Sbjct: 180 ----------------------------------RPARPGPAPAALAQAAERLAAARRPL 205
Query: 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA----ARTHAL-QN 558
++ G GA A L + + P T KG++P HP + A AL
Sbjct: 206 ILAGGGAL--AAAAALRALAERLDAPVALTINAKGLLPAGHPLLLGASQSLPAVRALIAE 263
Query: 559 ADLVLLLGARL---NWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTV 615
AD+VL +G L ++ ++F F ++I++D++ ++L + A+A+ D R +
Sbjct: 264 ADVVLAVGTELGETDYDVYF--DGGFPLPGELIRIDIDPDQLARNYPPALALVGDARAAL 321
Query: 616 QQLKQMLSHTQRN 628
+ L L
Sbjct: 322 EALLARLPGQAAA 334
Score = 73.5 bits (181), Expect = 3e-13
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 3/130 (2%)
Query: 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL 68
+ + + + L+ G+E VFGI G+ +EL GI ++ R+EQ A + A +
Sbjct: 2 TTCGEALVRLLEAYGVETVFGIPGVHTVELYRGLAGSGIRHVTPRHEQGAGFMADGYARV 61
Query: 69 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDH--EGIGGFQECP-QVEL 125
+ KPGVC +++GPG+ + M A + PMLVI + +G G E P Q +
Sbjct: 62 SGKPGVCFIITGPGMTNIATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAM 121
Query: 126 ARPYCKYSAR 135
+S
Sbjct: 122 VAGVAAFSHT 131
Score = 53.8 bits (130), Expect = 4e-07
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 6/75 (8%)
Query: 168 PRHRLDAGT-FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYR 226
PR +A T +GT+G GL A+ AAL AP + VVC+ GD F+ EL + V
Sbjct: 396 PRRWFNASTGYGTLGYGLPAAIGAALG----APERPVVCLVGDGGLQFTLPELASAVEAD 451
Query: 227 LPVILVIVNNNGIYG 241
LP+I+++ NN+G YG
Sbjct: 452 LPLIVLLWNNDG-YG 465
>gnl|CDD|236014 PRK07418, PRK07418, acetolactate synthase 3 catalytic subunit;
Reviewed.
Length = 616
Score = 117 bits (295), Expect = 5e-27
Identities = 102/380 (26%), Positives = 163/380 (42%), Gaps = 60/380 (15%)
Query: 276 ALKFQGIEYVFGIVG---IPVI-ELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPG 331
+LK G++++FG G +P+ EL A + + +I +R+EQ A +AA T K G
Sbjct: 28 SLKRHGVKHIFGYPGGAILPIYDELYKAEAEGWLKHILVRHEQGAAHAADGYARATGKVG 87
Query: 332 VCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYS 391
VC SGPG + G+A AQ++ PM+VI G + G FQE + P K+S
Sbjct: 88 VCFGTSGPGATNLVTGIATAQMDSVPMVVITGQVPRPAIGTDAFQETDIFGITLPIVKHS 147
Query: 392 --ARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEPTLP 449
R P+ + + V +A +++ G+PG +D P ++ + + P P
Sbjct: 148 YVVRDPSD--MARIVAEAFHIASSGRPGPVLIDIPKDVGQEEFD----------YVPVEP 195
Query: 450 WPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVIIGKG 509
+ PT+ ++ A +LI EA+ PL+ +G G
Sbjct: 196 GS--------------------VKPPGYRPTVK-GNPRQINAALKLIEEAERPLLYVGGG 234
Query: 510 AAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH-------ALQNADLV 562
A + A EL F +P T MGKG + HP V H A+ DL+
Sbjct: 235 AISAGAHAELKELAERFQIPVTTTLMGKGAFDEHHPLSVGMLGMHGTAYANFAVTECDLL 294
Query: 563 LLLGARLNWILHF-----GRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQ 617
+ +GAR F G+ F S K+I +D++ E+ + + V I DVR
Sbjct: 295 IAVGAR------FDDRVTGKLDEFASRAKVIHIDIDPAEVGKNRRPDVPIVGDVRKV--- 345
Query: 618 LKQMLSHTQRNWSFSATSPW 637
L ++L + + T W
Sbjct: 346 LVKLLERSLEPTTPPRTQAW 365
Score = 65.5 bits (160), Expect = 1e-10
Identities = 49/148 (33%), Positives = 78/148 (52%), Gaps = 8/148 (5%)
Query: 18 ALKFQGIEYVFGIVG---IPVI-ELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPG 73
+LK G++++FG G +P+ EL A + + +I +R+EQ A +AA T K G
Sbjct: 28 SLKRHGVKHIFGYPGGAILPIYDELYKAEAEGWLKHILVRHEQGAAHAADGYARATGKVG 87
Query: 74 VCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYS 133
VC SGPG + G+A AQ++ PM+VI G + G FQE + P K+S
Sbjct: 88 VCFGTSGPGATNLVTGIATAQMDSVPMVVITGQVPRPAIGTDAFQETDIFGITLPIVKHS 147
Query: 134 --ARPPNIHLIGQHVEKAVRLSTFGKPG 159
R P+ + + V +A +++ G+PG
Sbjct: 148 YVVRDPSD--MARIVAEAFHIASSGRPG 173
Score = 62.8 bits (153), Expect = 7e-10
Identities = 56/225 (24%), Positives = 90/225 (40%), Gaps = 59/225 (26%)
Query: 164 LNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLV 223
L N PR + + GTMG G+ A+ + P + V+C+ GD++F + EL TL
Sbjct: 420 LRNGPRRWISSAGLGTMGFGMPAAMGVKVAL----PDEEVICIAGDASFLMNIQELGTLA 475
Query: 224 RYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIE 283
+Y + V VI+NN W ++++ S Y E SA+ + F +
Sbjct: 476 QYGINVKTVIINNG------------WQGMVRQWQESF-YGERYSASNMEPGMPDFVKLA 522
Query: 284 YVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343
FG+ G+ + E R++ A L GP L+
Sbjct: 523 EAFGVKGMVISE---------------RDQLKDAIAEA------------LAHDGPVLI- 554
Query: 344 TFGGMANAQI----NCWPMLVIGGSCAQDHEGIGGFQECPQVELA 384
+ + NC+PM+ G S AQ + G E P++ LA
Sbjct: 555 ------DVHVRRDENCYPMVPPGKSNAQ----MVGLPEHPELALA 589
>gnl|CDD|235700 PRK06112, PRK06112, acetolactate synthase catalytic subunit;
Validated.
Length = 578
Score = 113 bits (284), Expect = 8e-26
Identities = 97/375 (25%), Positives = 151/375 (40%), Gaps = 59/375 (15%)
Query: 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY 325
+ IA+ALK G+E +FG +P L +A + GI I R E A A
Sbjct: 13 NGTVAHAIARALKRHGVEQIFG-QSLPSA-LFLAAEAIGIRQIAYRTENAGGAMADGYAR 70
Query: 326 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 385
++ K V +GP +A A P++ + +D FQE + L +
Sbjct: 71 VSGKVAVVTAQNGPAATLLVAPLAEALKASVPIVALVQDVNRDQTDRNAFQELDHIALFQ 130
Query: 386 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLE 445
K+ R I +V++A +T G+PG L PA+LL A P L
Sbjct: 131 SCTKWVRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPADLLTAAAAAPA-APRSNSLG 189
Query: 446 PTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505
+P L+ T+P P L +A+ L+ +A+ P+V+
Sbjct: 190 ---HFP-------------------------LDRTVPAP--QRLAEAASLLAQAQRPVVV 219
Query: 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHP-------NCV---SAAR--T 553
G G S A L + + LP T MGKG V + HP + + S R
Sbjct: 220 AGGGVHISGASAALAALQSLAGLPVATTNMGKGAVDETHPLSLGVVGSLMGPRSPGRHLR 279
Query: 554 HALQNADLVLLLGARLN------WILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 607
++ AD+VLL+G R N W L + + I +D++ EE+ + + A+ +
Sbjct: 280 DLVREADVVLLVGTRTNQNGTDSWSL-------YPEQAQYIHIDVDGEEVGRNYE-ALRL 331
Query: 608 QSDVRLTVQQLKQML 622
D RLT+ L L
Sbjct: 332 VGDARLTLAALTDAL 346
Score = 61.7 bits (150), Expect = 1e-09
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 183 GLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYG 241
GLG+ + A+ PG V+C+ GD F ELET R +PV +V++ NNGI G
Sbjct: 438 GLGWGVPMAIGAKVARPGAPVICLVGDGGFAHVWAELETARRMGVPVTIVVL-NNGILG 495
Score = 59.4 bits (144), Expect = 6e-09
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 4/167 (2%)
Query: 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY 67
+ IA+ALK G+E +FG +P L +A + GI I R E A A
Sbjct: 13 NGTVAHAIARALKRHGVEQIFG-QSLPSA-LFLAAEAIGIRQIAYRTENAGGAMADGYAR 70
Query: 68 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 127
++ K V +GP +A A P++ + +D FQE + L +
Sbjct: 71 VSGKVAVVTAQNGPAATLLVAPLAEALKASVPIVALVQDVNRDQTDRNAFQELDHIALFQ 130
Query: 128 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLPRHRLDA 174
K+ R I +V++A +T G+PG +LL LP L A
Sbjct: 131 SCTKWVRRVTVAERIDDYVDQAFTAATSGRPGPVVLL--LPADLLTA 175
Score = 29.7 bits (67), Expect = 9.3
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 8/49 (16%)
Query: 638 WQELKLKCQTNRQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTV 686
W EL +T R++ +PV +V++ NNGI GF + +A V+ G T
Sbjct: 471 WAEL----ETARRMGVPVTIVVL-NNGIL-GFQK--HAETVKFGTHTDA 511
>gnl|CDD|236076 PRK07710, PRK07710, acetolactate synthase catalytic subunit;
Reviewed.
Length = 571
Score = 112 bits (282), Expect = 1e-25
Identities = 94/383 (24%), Positives = 167/383 (43%), Gaps = 47/383 (12%)
Query: 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL 326
++ Q++ +AL+ +G+E +FG G V+ L A GI +I R+EQ A +AA+ +
Sbjct: 16 MTGAQMLIEALEKEGVEVIFGYPGGAVLPLYDALYDCGIPHILTRHEQGAIHAAEGYARI 75
Query: 327 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARP 386
+ KPGV + SGPG + G+A+A I+ P++V G A G FQE + + P
Sbjct: 76 SGKPGVVIATSGPGATNVVTGLADAMIDSLPLVVFTGQVATSVIGSDAFQEADIMGITMP 135
Query: 387 YCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEP 446
K++ + + + +++A ++T G+PG +D P ++ + +
Sbjct: 136 VTKHNYQVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKDM--------VVEEGEFCYDV 187
Query: 447 TLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVII 506
+ PG + + L I +L QA + AK P+++
Sbjct: 188 QMDLPGYQPNYEPNLL----------------------QIRKLVQA---VSVAKKPVILA 222
Query: 507 GKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH-------ALQNA 559
G G +++A EL S+ +P + T +G G P HP + A H AL
Sbjct: 223 GAGVLHAKASKELTSYAEQQEIPVVHTLLGLGGFPADHPLFLGMAGMHGTYTANMALYEC 282
Query: 560 DLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLK 619
DL++ +GAR + + G F + +D++ E+ +V + I +D + +Q L
Sbjct: 283 DLLINIGARFDDRVT-GNLAYFAKEATVAHIDIDPAEIGKNVPTEIPIVADAKQALQVL- 340
Query: 620 QMLSHTQRNWSFSATSPWWQELK 642
Q+ W LK
Sbjct: 341 -----LQQEGKKENHHEWLSLLK 358
Score = 78.6 bits (194), Expect = 8e-15
Identities = 47/151 (31%), Positives = 83/151 (54%)
Query: 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL 68
++ Q++ +AL+ +G+E +FG G V+ L A GI +I R+EQ A +AA+ +
Sbjct: 16 MTGAQMLIEALEKEGVEVIFGYPGGAVLPLYDALYDCGIPHILTRHEQGAIHAAEGYARI 75
Query: 69 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARP 128
+ KPGV + SGPG + G+A+A I+ P++V G A G FQE + + P
Sbjct: 76 SGKPGVVIATSGPGATNVVTGLADAMIDSLPLVVFTGQVATSVIGSDAFQEADIMGITMP 135
Query: 129 YCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
K++ + + + +++A ++T G+PG
Sbjct: 136 VTKHNYQVRKASDLPRIIKEAFHIATTGRPG 166
Score = 46.3 bits (110), Expect = 8e-05
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
Query: 142 IGQHVEKAVRLSTFGKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGK 201
+GQH A + F P + + +G GTMG GL A+ A L P +
Sbjct: 398 VGQHQMWAAQYYPFKTPDK----------WVTSGGLGTMGFGLPAAIGAQLA----KPDE 443
Query: 202 RVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNN 236
VV + GD F + EL + LPV +VI+NN
Sbjct: 444 TVVAIVGDGGFQMTLQELSVIKELSLPVKVVILNN 478
>gnl|CDD|236312 PRK08617, PRK08617, acetolactate synthase; Reviewed.
Length = 552
Score = 111 bits (281), Expect = 2e-25
Identities = 65/210 (30%), Positives = 103/210 (49%), Gaps = 15/210 (7%)
Query: 271 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKP 330
++ +L QG++YVFGI G + + A + G I R+EQ A + A AIG LT KP
Sbjct: 9 DLVVDSLINQGVKYVFGIPGAKIDRVFDALEDSGPELIVTRHEQNAAFMAAAIGRLTGKP 68
Query: 331 GVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQD------HEGIGGFQECPQVELA 384
GV LV SGPG+ + G+ A P++ IGG + H Q V L
Sbjct: 69 GVVLVTSGPGVSNLATGLVTATAEGDPVVAIGGQVKRADRLKRTH------QSMDNVALF 122
Query: 385 RPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVL 444
RP KYSA + + + + A R + G+PG +++ P +++ + A+ P K
Sbjct: 123 RPITKYSAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQDVVDAPVTSKAIAPLSK-- 180
Query: 445 EPTLPWPGIAELKQASQLILEAKAPLVIIG 474
P L ++ ++LI AK P++++G
Sbjct: 181 -PKLGPASPEDINYLAELIKNAKLPVLLLG 209
Score = 88.4 bits (220), Expect = 7e-18
Identities = 53/157 (33%), Positives = 77/157 (49%), Gaps = 12/157 (7%)
Query: 13 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKP 72
++ +L QG++YVFGI G + + A + G I R+EQ A + A AIG LT KP
Sbjct: 9 DLVVDSLINQGVKYVFGIPGAKIDRVFDALEDSGPELIVTRHEQNAAFMAAAIGRLTGKP 68
Query: 73 GVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQD------HEGIGGFQECPQVELA 126
GV LV SGPG+ + G+ A P++ IGG + H Q V L
Sbjct: 69 GVVLVTSGPGVSNLATGLVTATAEGDPVVAIGGQVKRADRLKRTH------QSMDNVALF 122
Query: 127 RPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLL 163
RP KYSA + + + + A R + G+PG + +
Sbjct: 123 RPITKYSAEVQDPDNLSEVLANAFRAAESGRPGAAFV 159
Score = 67.6 bits (166), Expect = 2e-11
Identities = 34/71 (47%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PRH L + T+GV L +A+AAAL PGK+VV V GD F FS MELET VR +L
Sbjct: 404 PRHLLFSNGMQTLGVALPWAIAAALV----RPGKKVVSVSGDGGFLFSAMELETAVRLKL 459
Query: 228 PVILVIVNNNG 238
++ +I N+
Sbjct: 460 NIVHIIWNDGH 470
>gnl|CDD|235718 PRK06154, PRK06154, hypothetical protein; Provisional.
Length = 565
Score = 110 bits (276), Expect = 6e-25
Identities = 85/371 (22%), Positives = 147/371 (39%), Gaps = 58/371 (15%)
Query: 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL 326
+ + +A+ LK +G+E +FG PV EL A GI + R E+ A + A
Sbjct: 20 MKVAEAVAEILKEEGVELLFGF---PVNELFDAAAAAGIRPVIARTERVAVHMADGYARA 76
Query: 327 T--KKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELA 384
T ++ GV V GPG + FGG+A A + P+L + + + P E
Sbjct: 77 TSGERVGVFAVQYGPGAENAFGGVAQAYGDSVPVLFLPTGYPRGSTDVA-----PNFESL 131
Query: 385 RPY---CKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTP 441
R Y K+ + + + + +A G+PG L+ P ++LA+ +++ L P
Sbjct: 132 RNYRHITKWCEQVTLPDEVPELMRRAFTRLRNGRPGPVVLELPVDVLAEELDELPLDHRP 191
Query: 442 KVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKA 501
++ + P E+ +A+ L+L A+
Sbjct: 192 ------------------------SRR-----------SRPGADPVEVVEAAALLLAAER 216
Query: 502 PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHP-------NCVSAARTH 554
P++ G+G Y+QA EL +P + T GK P+ HP A H
Sbjct: 217 PVIYAGQGVLYAQATPELKELAELLEIPVMTTLNGKSAFPEDHPLALGSGGRARPATVAH 276
Query: 555 ALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLT 614
L+ AD++ +G L + P K+ II L+ +L+ + D L
Sbjct: 277 FLREADVLFGIGCSLTRSYYGLPMPEGKT---IIHSTLDDADLNKDYPIDHGLVGDAALV 333
Query: 615 VQQLKQMLSHT 625
++Q+ + L
Sbjct: 334 LKQMIEELRRR 344
Score = 60.2 bits (146), Expect = 4e-09
Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 5/65 (7%)
Query: 180 MGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGI 239
+G GLG A+ A L P V+ + GD+AFG +GM+ ET VR R+P IL I+ NN
Sbjct: 433 LGYGLGLAMGAKLA----RPDALVINLWGDAAFGMTGMDFETAVRERIP-ILTILLNNFS 487
Query: 240 YGGFD 244
GG+D
Sbjct: 488 MGGYD 492
Score = 56.0 bits (135), Expect = 7e-08
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL 68
+ + +A+ LK +G+E +FG PV EL A GI + R E+ A + A
Sbjct: 20 MKVAEAVAEILKEEGVELLFGF---PVNELFDAAAAAGIRPVIARTERVAVHMADGYARA 76
Query: 69 T--KKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVI 103
T ++ GV V GPG + FGG+A A + P+L +
Sbjct: 77 TSGERVGVFAVQYGPGAENAFGGVAQAYGDSVPVLFL 113
>gnl|CDD|132922 cd07039, TPP_PYR_POX, Pyrimidine (PYR) binding domain of POX.
Thiamine pyrophosphate (TPP family), pyrimidine (PYR)
binding domain of pyruvate oxidase (POX) subfamily. The
PYR domain is found in many key metabolic enzymes which
use TPP (also known as thiamine diphosphate) as a
cofactor. TPP binds in the cleft formed by a PYR domain
and a PP domain. The PYR domain, binds the
aminopyrimidine ring of TPP, the PP domain binds the
diphosphate residue. The PYR and PP domains have a
common fold, but do not share strong sequence
conservation. The PP domain is not included in this
sub-family. Most TPP-dependent enzymes have the PYR and
PP domains on the same subunit although these domains
can be alternatively arranged in the primary structure.
TPP-dependent enzymes are multisubunit proteins, the
smallest catalytic unit being a dimer-of-active sites.
Lactobacillus plantarum POX is a homotetramer
(dimer-of-homodimers), having two active sites per
homodimer lying between PYR and PP domains of different
subunits. POX decarboxylates pyruvate, producing
hydrogen peroxide and the energy-storage metabolite
acetylphosphate.
Length = 164
Score = 98.8 bits (247), Expect = 7e-24
Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 8/161 (4%)
Query: 271 QVIAQALKFQGIEYVFGIVGIPVIELAMACQ-QEGIHYIGMRNEQAACYAAQAIGYLTKK 329
VI + L+ G++ V+GI G + L A + + I +I +R+E+AA +AA A LT K
Sbjct: 4 DVIVETLENWGVKRVYGIPGDSINGLMDALRREGKIEFIQVRHEEAAAFAASAEAKLTGK 63
Query: 330 PGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCK 389
GVCL SGPG +H G+ +A+ + P+L I G D G FQE + L +
Sbjct: 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAGQVPTDELGTDYFQEVDLLALFKDVAV 123
Query: 390 YSARPPNIHLIGQH---VEKAVRLSTFGKPGVSYLDFPANL 427
Y+ + Q +++A+R + K GV+ L P ++
Sbjct: 124 YNET---VTSPEQLPELLDRAIR-TAIAKRGVAVLILPGDV 160
Score = 92.6 bits (231), Expect = 1e-21
Identities = 47/140 (33%), Positives = 70/140 (50%), Gaps = 4/140 (2%)
Query: 13 QVIAQALKFQGIEYVFGIVGIPVIELAMACQ-QEGIHYIGMRNEQAACYAAQAIGYLTKK 71
VI + L+ G++ V+GI G + L A + + I +I +R+E+AA +AA A LT K
Sbjct: 4 DVIVETLENWGVKRVYGIPGDSINGLMDALRREGKIEFIQVRHEEAAAFAASAEAKLTGK 63
Query: 72 PGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCK 131
GVCL SGPG +H G+ +A+ + P+L I G D G FQE + L +
Sbjct: 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAGQVPTDELGTDYFQEVDLLALFKDVAV 123
Query: 132 YSARPPNIHLIGQHVEKAVR 151
Y+ + Q E R
Sbjct: 124 YNET---VTSPEQLPELLDR 140
>gnl|CDD|236042 PRK07525, PRK07525, sulfoacetaldehyde acetyltransferase; Validated.
Length = 588
Score = 103 bits (258), Expect = 1e-22
Identities = 86/366 (23%), Positives = 145/366 (39%), Gaps = 67/366 (18%)
Query: 277 LKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVC 333
L+ GI + FGI+G + +L GI +I + +EQ A + A +T + G+
Sbjct: 16 LQAHGITHAFGIIGSAFMDASDLFPPA---GIRFIDVAHEQNAGHMADGYTRVTGRMGMV 72
Query: 334 LVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSAR 393
+ +GPG+ + +A A P++++ G GGFQE Q+ + KY
Sbjct: 73 IGQNGPGITNFVTAVATAYWAHTPVVLVTPQAGTKTIGQGGFQEAEQMPMFEDMTKYQEE 132
Query: 394 PPN----IHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEPTLP 449
+ ++ + +KA R S G + ++ P + I+ +P P LE
Sbjct: 133 VRDPSRMAEVLNRVFDKAKRES-----GPAQINIPRDYFYGVIDVE--IPQPVRLER--- 182
Query: 450 WPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVIIGKG 509
G L +A+ L+ EAK P+++ G G
Sbjct: 183 --------------------------------GAGGEQSLAEAAELLSEAKFPVILSGAG 210
Query: 510 AAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHP-------NCVSAARTHALQNADLV 562
S A E + + P + P +HP S A + AD+V
Sbjct: 211 VVLSDAIEECKALAERLDAPVACGYLHNDAFPGSHPLWVGPLGYNGSKAAMELIAKADVV 270
Query: 563 LLLGARLNWILHFGRAPR-----FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQ 617
L LG RLN FG P+ + + KIIQVD+N + + + + +V I D + ++
Sbjct: 271 LALGTRLN---PFGTLPQYGIDYWPKDAKIIQVDINPDRIGLTKKVSVGICGDAKAVARE 327
Query: 618 LKQMLS 623
L L+
Sbjct: 328 LLARLA 333
Score = 68.5 bits (168), Expect = 1e-11
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 6/123 (4%)
Query: 19 LKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVC 75
L+ GI + FGI+G + +L GI +I + +EQ A + A +T + G+
Sbjct: 16 LQAHGITHAFGIIGSAFMDASDLFPPA---GIRFIDVAHEQNAGHMADGYTRVTGRMGMV 72
Query: 76 LVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSAR 135
+ +GPG+ + +A A P++++ G GGFQE Q+ + KY
Sbjct: 73 IGQNGPGITNFVTAVATAYWAHTPVVLVTPQAGTKTIGQGGFQEAEQMPMFEDMTKYQEE 132
Query: 136 PPN 138
+
Sbjct: 133 VRD 135
Score = 58.9 bits (143), Expect = 9e-09
Identities = 38/147 (25%), Positives = 57/147 (38%), Gaps = 27/147 (18%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
R L G+FG G + A + C P + VV GD A+G S E+ T VR+
Sbjct: 425 GRKYLAPGSFGNCGYAFPAIIGAKIAC----PDRPVVGFAGDGAWGISMNEVMTAVRHNW 480
Query: 228 PVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFG 287
PV V+ N Y W +K N + Y+ + + + + GI G
Sbjct: 481 PVTAVVFRN-----------YQWG--AEKKNQVDFYNNRFVGTE-LDNNVSYAGIAEAMG 526
Query: 288 IVGI---------PVIELAMACQQEGI 305
G+ P ++ A+ Q EG
Sbjct: 527 AEGVVVDTQEELGPALKRAIDAQNEGK 553
>gnl|CDD|180570 PRK06457, PRK06457, pyruvate dehydrogenase; Provisional.
Length = 549
Score = 101 bits (254), Expect = 4e-22
Identities = 78/351 (22%), Positives = 148/351 (42%), Gaps = 54/351 (15%)
Query: 268 SANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLT 327
S +VI + L+ GI+ ++GI G + L A ++ + Y+ +R+E+ A AA +T
Sbjct: 3 SVAEVIIRVLEDNGIQRIYGIPGDSIDPLVDAIRKSKVKYVQVRHEEGAALAASVEAKIT 62
Query: 328 KKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPY 387
KP C+ SGPG +H G+ +A+++ P++ + G D G FQE +L
Sbjct: 63 GKPSACMGTSGPGSIHLLNGLYDAKMDHAPVIALTGQVESDMIGHDYFQEVNLTKLFDDV 122
Query: 388 CKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEPT 447
++ N + +A+R K GV++++ P ++
Sbjct: 123 AVFNQILINPENAEYIIRRAIR-EAISKRGVAHINLPVDI-------------------- 161
Query: 448 LPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVIIG 507
L+++S+ +GKV + +A LI E++ P+++IG
Sbjct: 162 --------LRKSSEYKGSKNTE---VGKVKYSI-------DFSRAKELIKESEKPVLLIG 203
Query: 508 KGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV-------SAARTHALQNAD 560
G E+ F P + T GKG++PD P + + A+ AD
Sbjct: 204 GGT--RGLGKEINRFAEKIGAPIIYTLNGKGILPDLDPKVMGGIGLLGTKPSIEAMDKAD 261
Query: 561 LVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDV 611
L+++LG ++ + + K+IQVD++ + + ++ V
Sbjct: 262 LLIMLGTSFPYVNFLNK------SAKVIQVDIDNSNIGKRLDVDLSYPIPV 306
Score = 61.4 bits (149), Expect = 2e-09
Identities = 39/142 (27%), Positives = 70/142 (49%)
Query: 10 SANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLT 69
S +VI + L+ GI+ ++GI G + L A ++ + Y+ +R+E+ A AA +T
Sbjct: 3 SVAEVIIRVLEDNGIQRIYGIPGDSIDPLVDAIRKSKVKYVQVRHEEGAALAASVEAKIT 62
Query: 70 KKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPY 129
KP C+ SGPG +H G+ +A+++ P++ + G D G FQE +L
Sbjct: 63 GKPSACMGTSGPGSIHLLNGLYDAKMDHAPVIALTGQVESDMIGHDYFQEVNLTKLFDDV 122
Query: 130 CKYSARPPNIHLIGQHVEKAVR 151
++ N + +A+R
Sbjct: 123 AVFNQILINPENAEYIIRRAIR 144
Score = 44.0 bits (104), Expect = 4e-04
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 178 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNN 237
G+MG+G+ ++ A+ + ++V+ GD F + MEL T +Y LPV ++I NN+
Sbjct: 396 GSMGIGVPGSVGASFAVEN---KRQVISFVGDGGFTMTMMELITAKKYDLPVKIIIYNNS 452
>gnl|CDD|213733 TIGR02720, pyruv_oxi_spxB, pyruvate oxidase. Members of this
family are examples of pyruvate oxidase (EC 1.2.3.3), an
enzyme with FAD and TPP as cofactors that catalyzes the
reaction pyruvate + phosphate + O2 + H2O = acetyl
phosphate + CO2 + H2O2. It should not be confused with
pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in
E. coli PoxB, although the E. coli enzyme is closely
homologous and has pyruvate oxidase as an alternate name
[Energy metabolism, Aerobic].
Length = 575
Score = 100 bits (250), Expect = 1e-21
Identities = 88/381 (23%), Positives = 161/381 (42%), Gaps = 56/381 (14%)
Query: 269 ANQVIAQALKFQGIEYVFGIVG--IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL 326
A+ + + L+ G+++++GI G A++ +++ IHYI +R+E+ AA A L
Sbjct: 1 ASAAVLKVLEAWGVDHIYGIPGGSFNSTMDALSAERDRIHYIQVRHEEVGALAAAADAKL 60
Query: 327 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARP 386
T K GVC +GPG H G+ +A+ + P+L + G + FQE + +
Sbjct: 61 TGKIGVCFGSAGPGATHLLNGLYDAKEDHVPVLALVGQVPTTGMNMDTFQEMNENPIYAD 120
Query: 387 YCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEP 446
Y+ + +++A+R + GV+ + P + Q I P
Sbjct: 121 VAVYNRTAMTAESLPHVIDEAIR-RAYAHNGVAVVTIPVDFGWQEI-------------P 166
Query: 447 TLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVII 506
+ + Q P LP P + + +A + + A+ P++
Sbjct: 167 DNDYYASSVSYQT-------------------PLLPAPDVEAVTRAVQTLKAAERPVIYY 207
Query: 507 GKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHP-NCVSAART------HALQNA 559
G GA +A EL + +P + T + KG++ D +P SA R AL A
Sbjct: 208 GIGA--RKAGEELEALSEKLKIPLISTGLAKGIIEDRYPAYLGSAYRVAQKPANEALFQA 265
Query: 560 DLVLLLGARLNW-ILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQL 618
DLVL +G + + FK+ IQ+D++ +L +A+ +D + + L
Sbjct: 266 DLVLFVGNNYPFAEVSKA----FKNTKYFIQIDIDPAKLGKRHHTDIAVLADAK---KAL 318
Query: 619 KQMLSHTQRNWSFSATSPWWQ 639
+L+ + ++PWWQ
Sbjct: 319 AAILAQVEP----RESTPWWQ 335
Score = 59.8 bits (145), Expect = 5e-09
Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Query: 11 ANQVIAQALKFQGIEYVFGIVG--IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL 68
A+ + + L+ G+++++GI G A++ +++ IHYI +R+E+ AA A L
Sbjct: 1 ASAAVLKVLEAWGVDHIYGIPGGSFNSTMDALSAERDRIHYIQVRHEEVGALAAAADAKL 60
Query: 69 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE 119
T K GVC +GPG H G+ +A+ + P+L + G + FQE
Sbjct: 61 TGKIGVCFGSAGPGATHLLNGLYDAKEDHVPVLALVGQVPTTGMNMDTFQE 111
Score = 44.1 bits (104), Expect = 4e-04
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 160 RSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMEL 219
R L + + + F TMGVG+ A+AA L +Y P ++V + GD AF + +L
Sbjct: 391 RHLKMTPKNKWI-TSNLFATMGVGVPGAIAAKL---NY-PDRQVFNLAGDGAFSMTMQDL 445
Query: 220 ETLVRYRLPVILVIVNN 236
T V+Y LPVI ++ +N
Sbjct: 446 LTQVQYHLPVINIVFSN 462
>gnl|CDD|217223 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal
TPP binding domain.
Length = 151
Score = 90.0 bits (224), Expect = 7e-21
Identities = 39/100 (39%), Positives = 48/100 (48%), Gaps = 15/100 (15%)
Query: 142 IGQHVEKAVRLSTFGKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGK 201
IG H A R F P R L +G GTMG GL A+ A L P +
Sbjct: 2 IGCHQMWAARYYRFRPP----------RRYLTSGGLGTMGYGLPAAIGAKLAR----PDR 47
Query: 202 RVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYG 241
VV + GD F + EL T VRY LP+ +V++ NNG YG
Sbjct: 48 PVVAIAGDGGFQMNLQELATAVRYNLPITVVVL-NNGGYG 86
Score = 43.3 bits (103), Expect = 9e-05
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 959 LPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLC 1018
LP+ +V++NN G YG T G P P + + K+ +G G
Sbjct: 73 LPITVVVLNN-GGYG----MTRGQQTPFGGGRYSGPDGKDLPPVDFAKLAEAYGAKGARV 127
Query: 1019 TTVPQIKQAMKKCLQTTTRPSLINI 1043
+ ++++A+K+ L+ P+LI++
Sbjct: 128 ESPEELEEALKEALE-HDGPALIDV 151
>gnl|CDD|181661 PRK09124, PRK09124, pyruvate dehydrogenase; Provisional.
Length = 574
Score = 93.5 bits (233), Expect = 2e-19
Identities = 93/367 (25%), Positives = 151/367 (41%), Gaps = 54/367 (14%)
Query: 271 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTKK 329
IA+ L+ G++ ++G+ G + L+ + ++ G I ++ R+E+ A +AA A LT +
Sbjct: 7 DYIAKTLEQAGVKRIWGVTGDSLNGLSDSLRRMGTIEWMHTRHEEVAAFAAGAEAQLTGE 66
Query: 330 PGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQEC-PQVELARPYC 388
VC GPG LH G+ + N P+L I G G FQE PQ EL R
Sbjct: 67 LAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQ-ELFRECS 125
Query: 389 KYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEPTL 448
Y N + + + A+R GV+ + P ++ AL P P+ T
Sbjct: 126 HYCELVSNPEQLPRVLAIAMR-KAILNRGVAVVVLPGDV--------ALKPAPE--RATP 174
Query: 449 PWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVIIGK 508
W A P+V P EL++ + L+ + ++ G
Sbjct: 175 HW-------------YHAPQPVVT-----------PAEEELRKLAALLNGSSNITLLCGS 210
Query: 509 GAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVS-------AARTHALQNADL 561
G A A EL++ + P + GK V +P V ++ HA+ N D
Sbjct: 211 GCA--GAHDELVALAETLKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGYHAMMNCDT 268
Query: 562 VLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQM 621
+L+LG F + ++ KIIQ+D+N L + + DV+ T+ L +
Sbjct: 269 LLMLGTD------FPYRQFYPTDAKIIQIDINPGSLGRRSPVDLGLVGDVKATLAALLPL 322
Query: 622 LS-HTQR 627
L T R
Sbjct: 323 LEEKTDR 329
Score = 55.8 bits (135), Expect = 8e-08
Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 6/123 (4%)
Query: 13 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTKK 71
IA+ L+ G++ ++G+ G + L+ + ++ G I ++ R+E+ A +AA A LT +
Sbjct: 7 DYIAKTLEQAGVKRIWGVTGDSLNGLSDSLRRMGTIEWMHTRHEEVAAFAAGAEAQLTGE 66
Query: 72 PGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQEC-PQVELARP-- 128
VC GPG LH G+ + N P+L I G G FQE PQ EL R
Sbjct: 67 LAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQ-ELFRECS 125
Query: 129 -YC 130
YC
Sbjct: 126 HYC 128
Score = 33.0 bits (76), Expect = 0.88
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 11/72 (15%)
Query: 169 RHRLDAGTF--GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGM--ELETLVR 224
+ RL G+F G+M A+ AL PG++VV + GD GFS + + +LV+
Sbjct: 398 KRRL-LGSFNHGSMAN----AMPQALGAQAAHPGRQVVALSGDG--GFSMLMGDFLSLVQ 450
Query: 225 YRLPVILVIVNN 236
+LPV +V+ NN
Sbjct: 451 LKLPVKIVVFNN 462
>gnl|CDD|238318 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) enzyme family,
TPP-binding module; found in many key metabolic enzymes
which use TPP (also known as thiamine diphosphate) as a
cofactor. These enzymes include, among others, the E1
components of the pyruvate, the acetoin and the branched
chain alpha-keto acid dehydrogenase complexes.
Length = 168
Score = 86.2 bits (214), Expect = 2e-19
Identities = 37/74 (50%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
R L + FG MG GL A+ AAL AP + VVC+ GD F +G EL T VRY L
Sbjct: 36 GRRFLTSTGFGAMGYGLPAAIGAALA----APDRPVVCIAGDGGFMMTGQELATAVRYGL 91
Query: 228 PVILVIVNNNGIYG 241
PVI+V+ NN G YG
Sbjct: 92 PVIVVVFNNGG-YG 104
Score = 37.6 bits (88), Expect = 0.010
Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 22/112 (19%)
Query: 939 GGFDETTYASIVESGEVTTV----LPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSP 994
GGF T E+ T LPVI+V+ NN G Y +I E
Sbjct: 74 GGFMMT-------GQELATAVRYGLPVIVVVFNNGG---------YGTIRMHQEAFYGGR 117
Query: 995 PT-SLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILI 1045
+ + + + + +G G ++ A+ + L P+LI +
Sbjct: 118 VSGTDLSNPDFAALAEAYGAKGVRVEDPEDLEAALAEALA-AGGPALIEVKT 168
>gnl|CDD|180820 PRK07064, PRK07064, hypothetical protein; Provisional.
Length = 544
Score = 90.4 bits (225), Expect = 1e-18
Identities = 80/361 (22%), Positives = 147/361 (40%), Gaps = 60/361 (16%)
Query: 272 VIAQALKFQGIEYVFGIVGI---PVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTK 328
+IA L+ G++ FG++ I P+++ A+ ++ I ++ R E A A A ++
Sbjct: 8 LIAAFLEQCGVKTAFGVISIHNMPILD-AIG-RRGKIRFVPARGEAGAVNMADAHARVSG 65
Query: 329 KPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDH--EGIGGFQECP-QVELAR 385
GV L +G G + G + A P+L I G + + +G E P Q+ + R
Sbjct: 66 GLGVALTSTGTGAGNAAGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLR 125
Query: 386 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLE 445
K + R + + +AVR++ G ++ P ++ Q+A + P L
Sbjct: 126 AVSKAAFRVRSAETALATIREAVRVALTAPTGPVSVEIPIDI------QAAEIELPDDLA 179
Query: 446 PTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505
P + +P P A + + + + A+ PL+
Sbjct: 180 P------------------------------VHVAVPEPDAAAVAELAERLAAARRPLLW 209
Query: 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHA-----LQNAD 560
+G GA ++ AE + L + + G+GVVP+ HP + A A + D
Sbjct: 210 LGGGARHAGAEVKRLV---DLGFGVVTSTQGRGVVPEDHPASLGAFNNSAAVEALYKTCD 266
Query: 561 LVLLLGARL--NWILHFG-RAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQ 617
L+L++G+RL N L + PR +I+VD +A + + D + +
Sbjct: 267 LLLVVGSRLRGNETLKYSLALPR-----PLIRVDADAAADGRGYPNDLFVHGDAARVLAR 321
Query: 618 L 618
L
Sbjct: 322 L 322
Score = 50.0 bits (120), Expect = 6e-06
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 14 VIAQALKFQGIEYVFGIVGI---PVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTK 70
+IA L+ G++ FG++ I P+++ A+ ++ I ++ R E A A A ++
Sbjct: 8 LIAAFLEQCGVKTAFGVISIHNMPILD-AIG-RRGKIRFVPARGEAGAVNMADAHARVSG 65
Query: 71 KPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGG 105
GV L +G G + G + A P+L I G
Sbjct: 66 GLGVALTSTGTGAGNAAGALVEALTAGTPLLHITG 100
Score = 42.3 bits (100), Expect = 0.001
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 178 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNN 237
G +G GL A+ AAL PG++ V + GD + EL T V+ +++V++N+
Sbjct: 405 GGIGQGLAMAIGAALA----GPGRKTVGLVGDGGLMLNLGELATAVQENANMVIVLMNDG 460
Query: 238 GIYG 241
G YG
Sbjct: 461 G-YG 463
>gnl|CDD|236243 PRK08327, PRK08327, acetolactate synthase catalytic subunit;
Validated.
Length = 569
Score = 86.6 bits (215), Expect = 3e-17
Identities = 81/374 (21%), Positives = 138/374 (36%), Gaps = 69/374 (18%)
Query: 276 ALKFQGIEYVFGIVG---IPVIELAMACQQEGIH---YIGMRNEQAACYAAQAIGY--LT 327
LK G++Y+F G P+IE + G ++ +E A + A GY +T
Sbjct: 16 LLKELGVDYIFINSGTDYPPIIEAKARARAAGRPLPEFVICPHEIVA--ISMAHGYALVT 73
Query: 328 KKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEG--------IGGFQEC- 378
KP +V G + GG+ NA + P+LV G EG I QE
Sbjct: 74 GKPQAVMVHVDVGTANALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMR 133
Query: 379 PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALV 438
Q L R Y K+ IG+ V +A++++ G YL P +LA+
Sbjct: 134 DQGGLVREYVKWDYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPREVLAE-------- 185
Query: 439 PTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILE 498
P+V A P P ++ +A+ ++
Sbjct: 186 EVPEVKADAGRQMAPAP--------------------------PAPDPEDIARAAEMLAA 219
Query: 499 AKAPLVIIGKGAAYSQAETELLSFVNSFNLP---FLPTPMGKGVVPDAHPNCVSAARTHA 555
A+ P++I + ++ L +P + + P HP +
Sbjct: 220 AERPVIITWRAGRTAEGFASLRRLAEELAIPVVEYAGEVV---NYPSDHPLHLGPDPRAD 276
Query: 556 LQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHN-----SVQAAVAIQSD 610
L ADLVL++ + + WI R ++ ++IQ+D + L + + IQ+D
Sbjct: 277 LAEADLVLVVDSDVPWIPKKIRPD---ADARVIQID--VDPLKSRIPLWGFPCDLCIQAD 331
Query: 611 VRLTVQQLKQMLSH 624
+ QL++ L
Sbjct: 332 TSTALDQLEERLKS 345
Score = 46.9 bits (112), Expect = 6e-05
Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 26/185 (14%)
Query: 18 ALKFQGIEYVFGIVG---IPVIELAMACQQEGIH---YIGMRNEQAACYAAQAIGY--LT 69
LK G++Y+F G P+IE + G ++ +E A + A GY +T
Sbjct: 16 LLKELGVDYIFINSGTDYPPIIEAKARARAAGRPLPEFVICPHEIVA--ISMAHGYALVT 73
Query: 70 KKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEG--------IGGFQEC- 120
KP +V G + GG+ NA + P+LV G EG I QE
Sbjct: 74 GKPQAVMVHVDVGTANALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMR 133
Query: 121 PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG-------RSLLLNNLPRHRLD 173
Q L R Y K+ IG+ V +A++++ G R +L +P + D
Sbjct: 134 DQGGLVREYVKWDYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPREVLAEEVPEVKAD 193
Query: 174 AGTFG 178
AG
Sbjct: 194 AGRQM 198
Score = 41.9 bits (99), Expect = 0.002
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 167 LPRHRLDAGTFGTM-----GVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELET 221
+PR G+ GLG+AL AAL P + V+ GD +F F E
Sbjct: 411 VPRQ-ARLNKPGSYFGDGSAGGLGWALGAALGAKLATPDRLVIATVGDGSFIFGVPEAAH 469
Query: 222 LV--RYRLPVILVIVNNNG 238
V RY LPV++V+ NN G
Sbjct: 470 WVAERYGLPVLVVVFNNGG 488
Score = 36.9 bits (86), Expect = 0.068
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 959 LPVILVIVNNNGIYGGFDEAT-------YASIVESGEVTTVSPPTSLGPSLRYEKMMAVF 1011
LPV LV+V NNG + EA YA G P T P + K+ F
Sbjct: 477 LPV-LVVVFNNGGWLAVKEAVLEVYPEGYA--ARKGTF----PGTDFDPRPDFAKIAEAF 529
Query: 1012 GHDGYLCTTVPQIKQAMKKCL 1032
G G ++K A+++ L
Sbjct: 530 GGYGERVEDPEELKGALRRAL 550
>gnl|CDD|226469 COG3960, COG3960, Glyoxylate carboligase [General function
prediction only].
Length = 592
Score = 84.2 bits (208), Expect = 1e-16
Identities = 89/390 (22%), Positives = 150/390 (38%), Gaps = 56/390 (14%)
Query: 277 LKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTKKPG---V 332
L+ +GI FG+ G + A ++ G I +I R+ + A + A+ GY G V
Sbjct: 14 LEKEGITTAFGVPGAAINPFYSALRKHGGIRHILARHVEGASHMAE--GYTRATAGNIGV 71
Query: 333 CLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSA 392
C+ SGP G+ +A + P+L I G + FQ +A+P K++
Sbjct: 72 CIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKWAV 131
Query: 393 RPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPG 452
L+ + +++A L G+PG +D P ++ I P + EP
Sbjct: 132 TVREPALVPRVLQQAFHLMRSGRPGPVLIDLPFDVQVAEIEFD-----PDMYEP------ 180
Query: 453 IAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVIIGKGAAY 512
L P + ++A ++++A+ PL++ G G
Sbjct: 181 ------------------------LPVYKPAATRVQAEKALAMLIQAERPLIVAGGGVIN 216
Query: 513 SQAETELLSFVNSFNLPFLPTPMGKGVVPDAHP---NCVSAARTHALQNA-----DLVLL 564
+ A L F +P +PT MG G +PD HP V +H NA D+V
Sbjct: 217 ADAAALLQEFAELTGVPVIPTLMGWGCIPDDHPLMAGMVGLQTSHRYGNATLLASDMVFG 276
Query: 565 LGARLNWI-LHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623
+G R W H G + K I VD+ ++ + I SD + + +L
Sbjct: 277 IGNR--WANRHTGSVEVYTEGRKFIHVDIEPTQIGRVFCPDLGIVSDAKAAL----TLLL 330
Query: 624 HTQRNWSFSATSPWWQELKLKCQTNRQVKL 653
+ W + P + CQ ++ L
Sbjct: 331 DVAQEWKKAGKLPCRKAWVADCQQRKRTLL 360
Score = 50.7 bits (121), Expect = 3e-06
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 18/129 (13%)
Query: 159 GRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGME 218
L PRH ++ G G LG+ + AAL P + VV + GD F F E
Sbjct: 400 AAQFLHVFKPRHWINCGQAGP----LGWTIPAALGVCAADPKRNVVAISGDYDFQFLIEE 455
Query: 219 LETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKS--NMSEDYDEELSANQVIAQA 276
L ++++P I V+VNN A+L +I+++ DY +L+ + +
Sbjct: 456 LAVGAQFKIPYIHVLVNN------------AYLGLIRQAQRAFDMDYCVQLAFENINSSE 503
Query: 277 LKFQGIEYV 285
+ G+++V
Sbjct: 504 VNGYGVDHV 512
Score = 44.5 bits (105), Expect = 3e-04
Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 8/154 (5%)
Query: 19 LKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTKKPG---V 74
L+ +GI FG+ G + A ++ G I +I R+ + A + A+ GY G V
Sbjct: 14 LEKEGITTAFGVPGAAINPFYSALRKHGGIRHILARHVEGASHMAE--GYTRATAGNIGV 71
Query: 75 CLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSA 134
C+ SGP G+ +A + P+L I G + FQ +A+P K++
Sbjct: 72 CIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKWAV 131
Query: 135 RPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLP 168
L+ + +++A L G+PG L+ +LP
Sbjct: 132 TVREPALVPRVLQQAFHLMRSGRPGPVLI--DLP 163
>gnl|CDD|226471 COG3962, COG3962, Acetolactate synthase [Amino acid transport and
metabolism].
Length = 617
Score = 81.7 bits (202), Expect = 1e-15
Identities = 45/157 (28%), Positives = 66/157 (42%), Gaps = 11/157 (7%)
Query: 482 PWPGIAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVP 541
P P EL A+ LI AK PL++ G G YS A L +F + +P + T GK +
Sbjct: 212 PPPDERELADAAALIKSAKKPLIVAGGGVLYSGAREALRAFAETHGIPVVETQAGKSALA 271
Query: 542 DAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNA 594
HP + A A + ADLV+ +G RL +A VK + LN
Sbjct: 272 WDHPLNLGGVGVTGTLAANRAAEEADLVIGIGTRLQDFTTGSKALFKNPGVKFLN--LNV 329
Query: 595 EELHNSVQAAVAIQSDVRLTVQQLKQMLS--HTQRNW 629
+ A+ + +D R ++ L + L T W
Sbjct: 330 QPFDAYKHDALPLVADARAGLEALSEALGGYRTAAGW 366
Score = 30.1 bits (68), Expect = 9.1
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNN 236
F MG + +A L P + V + GD ++ EL T V +I+V+++N
Sbjct: 443 FSCMG----YEIAGGLGAKAAEPDREVYVMVGDGSYMMLNSELATSVMLGKKIIVVLLDN 498
Query: 237 NGIYG 241
G YG
Sbjct: 499 RG-YG 502
>gnl|CDD|213633 TIGR01504, glyox_carbo_lig, glyoxylate carboligase. Glyoxylate
carboligase, also called tartronate-semialdehyde
synthase, releases CO2 while synthesizing a single
molecule of tartronate semialdehyde from two molecules
of glyoxylate. It is a thiamine pyrophosphate-dependent
enzyme, closely related in sequence to the large subunit
of acetolactate synthase. In the D-glycerate pathway,
part of allantoin degradation in the Enterobacteriaceae,
tartronate semialdehyde is converted to D-glycerate and
then 3-phosphoglycerate, a product of glycolysis and
entry point in the general metabolism.
Length = 588
Score = 81.2 bits (200), Expect = 1e-15
Identities = 87/387 (22%), Positives = 144/387 (37%), Gaps = 56/387 (14%)
Query: 277 LKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTKKPG---V 332
L+ +GI FG+ G + A + G I +I R+ + A + A+ GY G V
Sbjct: 13 LEKEGITTAFGVPGAAINPFYSALKAHGGIRHILARHVEGASHMAE--GYTRATAGNIGV 70
Query: 333 CLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSA 392
C+ SGP G+ +A + P+L I G + FQ +A+P K +
Sbjct: 71 CIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIAAIAKPVSKMAV 130
Query: 393 RPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPG 452
L+ + +++A L G+PG +D P ++ I P EP
Sbjct: 131 TVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDVQVAEIEFD-----PDTYEP------ 179
Query: 453 IAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVIIGKGAAY 512
L P A++++A ++ A+ PL++ G G
Sbjct: 180 ------------------------LPVYKPAATRAQIEKAVEMLNAAERPLIVAGGGVIN 215
Query: 513 SQAETELLSFVNSFNLPFLPTPMGKGVVPDAH---PNCVSAARTHALQNA-----DLVLL 564
+ A L F +P +PT MG G +PD H V +H NA D V
Sbjct: 216 ADAADLLQEFAELTGVPVIPTLMGWGCIPDDHELMAGMVGLQTSHRYGNATLLESDFVFG 275
Query: 565 LGARLNWI-LHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623
+G R W H G + K + VD+ ++ + I SD + + ++L
Sbjct: 276 IGNR--WANRHTGSVDVYTEGRKFVHVDIEPTQIGRVFAPDLGIVSDAKAAL----KLLV 329
Query: 624 HTQRNWSFSATSPWWQELKLKCQTNRQ 650
+ + P E CQ ++
Sbjct: 330 EVAQELKKAGRLPDRSEWAADCQQRKR 356
Score = 47.6 bits (113), Expect = 3e-05
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 29/138 (21%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PRH ++ G G LG+ + AAL P + VV + GD F F EL ++ +
Sbjct: 408 PRHWINCGQAGP----LGWTIPAALGVCAADPKRNVVALSGDYDFQFMIEELAVGAQHNI 463
Query: 228 PVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGI----E 283
P I V+VNN A+L +I+++ + D D + L F+ I
Sbjct: 464 PYIHVLVNN------------AYLGLIRQAQRAFDMDYCVQ--------LAFENINSSEV 503
Query: 284 YVFGIVGIPVIELAMACQ 301
+G+ + V E + C+
Sbjct: 504 NGYGVDHVKVAE-GLGCK 520
Score = 45.3 bits (107), Expect = 2e-04
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 8/154 (5%)
Query: 19 LKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTKKPG---V 74
L+ +GI FG+ G + A + G I +I R+ + A + A+ GY G V
Sbjct: 13 LEKEGITTAFGVPGAAINPFYSALKAHGGIRHILARHVEGASHMAE--GYTRATAGNIGV 70
Query: 75 CLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSA 134
C+ SGP G+ +A + P+L I G + FQ +A+P K +
Sbjct: 71 CIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIAAIAKPVSKMAV 130
Query: 135 RPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLP 168
L+ + +++A L G+PG L+ +LP
Sbjct: 131 TVREAALVPRVLQQAFHLMRSGRPGPVLI--DLP 162
>gnl|CDD|238973 cd02015, TPP_AHAS, Thiamine pyrophosphate (TPP) family,
Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding
module; composed of proteins similar to the large
catalytic subunit of AHAS. AHAS catalyzes the
condensation of two molecules of pyruvate to give the
acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the
precursor of the branched chain amino acids, valine and
leucine. AHAS also catalyzes the condensation of
pyruvate and 2-ketobutyrate to form
2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In
addition to requiring TPP and a divalent metal ion as
cofactors, AHAS requires FAD.
Length = 186
Score = 74.1 bits (183), Expect = 4e-15
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PR L +G GTMG GL A+ A + P K V+C+ GD +F + EL T +Y L
Sbjct: 40 PRSWLTSGGLGTMGFGLPAAIGAKVAR----PDKTVICIDGDGSFQMNIQELATAAQYNL 95
Query: 228 PVILVIVNNN 237
PV +VI+NN
Sbjct: 96 PVKIVILNNG 105
>gnl|CDD|183066 PRK11269, PRK11269, glyoxylate carboligase; Provisional.
Length = 591
Score = 74.2 bits (183), Expect = 2e-13
Identities = 80/329 (24%), Positives = 129/329 (39%), Gaps = 52/329 (15%)
Query: 277 LKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTKKPG---V 332
L+ +G+ FG+ G + A ++ G I +I R+ + A + A+ GY G V
Sbjct: 14 LEKEGVTTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAE--GYTRATAGNIGV 71
Query: 333 CLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSA 392
C+ SGP G+ +A + P+L I G + FQ +A+P K++
Sbjct: 72 CIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIESIAKPVTKWAV 131
Query: 393 RPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPG 452
L+ + ++A L G+PG +D P ++ I P EP
Sbjct: 132 TVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFDVQVAEIEFD-----PDTYEP------ 180
Query: 453 IAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVIIGKGAAY 512
L P A++++A ++ A+ PL++ G G
Sbjct: 181 ------------------------LPVYKPAATRAQIEKALEMLNAAERPLIVAGGGVIN 216
Query: 513 SQAETELLSFVNSFNLPFLPTPMGKGVVPDAHP---NCVSAARTHALQNA-----DLVLL 564
+ A L+ F +P +PT MG G +PD HP V +H NA D VL
Sbjct: 217 ADASDLLVEFAELTGVPVIPTLMGWGAIPDDHPLMAGMVGLQTSHRYGNATLLASDFVLG 276
Query: 565 LGARLNWI-LHFGRAPRFKSNVKIIQVDL 592
+G R W H G + K + VD+
Sbjct: 277 IGNR--WANRHTGSVEVYTKGRKFVHVDI 303
Score = 44.2 bits (105), Expect = 4e-04
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 22/122 (18%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PRH ++ G G LG+ + AAL P + VV + GD F F EL ++ L
Sbjct: 409 PRHWINCGQAGP----LGWTIPAALGVRAADPDRNVVALSGDYDFQFLIEELAVGAQFNL 464
Query: 228 PVILVIVNNNGIYGGFDEATYAWLDIIKKS----NMSEDYDEELSANQVIAQALKFQGIE 283
P I V+VNN A+L +I+++ +M DY +L+ + + L G++
Sbjct: 465 PYIHVLVNN------------AYLGLIRQAQRAFDM--DYCVQLAFENINSPELNGYGVD 510
Query: 284 YV 285
+V
Sbjct: 511 HV 512
>gnl|CDD|180614 PRK06546, PRK06546, pyruvate dehydrogenase; Provisional.
Length = 578
Score = 72.7 bits (179), Expect = 5e-13
Identities = 91/368 (24%), Positives = 150/368 (40%), Gaps = 65/368 (17%)
Query: 269 ANQVIAQALKFQGIEYVFGIVGI---PVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY 325
A Q++ Q L G++ ++GIVG P+++ + GI ++ +R+E+AA +AA A
Sbjct: 6 AEQLVEQ-LVAAGVKRIYGIVGDSLNPIVDAVR--RTGGIEWVHVRHEEAAAFAAAAEAQ 62
Query: 326 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQEC-PQ---V 381
LT K VC GPG LH G+ +A + P+L I G G FQE P V
Sbjct: 63 LTGKLAVCAGSCGPGNLHLINGLYDAHRSGAPVLAIASHIPSAQIGSGFFQETHPDRLFV 122
Query: 382 ELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTP 441
E + YC+ + + A++ GVS + P ++ + + P
Sbjct: 123 ECSG-YCEMVSSAEQAPRVLHS---AIQ-HAVAGGGVSVVTLPGDIADEPAPEG---FAP 174
Query: 442 KVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKA 501
V+ P P V+ P AE++ + I EAK
Sbjct: 175 SVISPR--------------------RPTVV-----------PDPAEVRALADAINEAKK 203
Query: 502 PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVS-------AARTH 554
+ G G + A E+L+ P + GK + +P V A
Sbjct: 204 VTLFAGAGVRGAHA--EVLALAEKIKAPVGHSLRGKEWIQYDNPFDVGMSGLLGYGAAHE 261
Query: 555 ALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLT 614
A+ ADL++LLG + +F +V+ QVD++ E L + +A+ DV T
Sbjct: 262 AMHEADLLILLGTDFPY-------DQFLPDVRTAQVDIDPEHLGRRTRVDLAVHGDVAET 314
Query: 615 VQQLKQML 622
++ L ++
Sbjct: 315 IRALLPLV 322
Score = 57.7 bits (140), Expect = 2e-08
Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 11 ANQVIAQALKFQGIEYVFGIVGI---PVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY 67
A Q++ Q L G++ ++GIVG P+++ + GI ++ +R+E+AA +AA A
Sbjct: 6 AEQLVEQ-LVAAGVKRIYGIVGDSLNPIVDAVR--RTGGIEWVHVRHEEAAAFAAAAEAQ 62
Query: 68 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE 119
LT K VC GPG LH G+ +A + P+L I G G FQE
Sbjct: 63 LTGKLAVCAGSCGPGNLHLINGLYDAHRSGAPVLAIASHIPSAQIGSGFFQE 114
Score = 42.3 bits (100), Expect = 0.001
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 164 LNNLPRHRLDAGTF--GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELET 221
+ R R+ G+F G+M L A+ A L PG++V+ + GD EL T
Sbjct: 393 ITPNGRRRV-IGSFRHGSMANALPHAIGAQLA----DPGRQVISMSGDGGLSMLLGELLT 447
Query: 222 LVRYRLPVILVIVNN 236
+ Y LPV +V+ NN
Sbjct: 448 VKLYDLPVKVVVFNN 462
>gnl|CDD|238968 cd02010, TPP_ALS, Thiamine pyrophosphate (TPP) family, Acetolactate
synthase (ALS) subfamily, TPP-binding module; composed
of proteins similar to Klebsiella pneumoniae ALS, a
catabolic enzyme required for butanediol fermentation.
ALS catalyzes the conversion of 2 molecules of pyruvate
to acetolactate and carbon dioxide. ALS does not contain
FAD, and requires TPP and a divalent metal cation for
activity.
Length = 177
Score = 68.1 bits (167), Expect = 5e-13
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
P L + TMGV L A+ A L P ++VV V GD F + ELET VR ++
Sbjct: 38 PNTCLISNGLATMGVALPGAIGAKLVY----PDRKVVAVSGDGGFMMNSQELETAVRLKI 93
Query: 228 PVILVIVNNNGIYG 241
P++++I N+NG YG
Sbjct: 94 PLVVLIWNDNG-YG 106
>gnl|CDD|238972 cd02014, TPP_POX, Thiamine pyrophosphate (TPP) family, Pyruvate
oxidase (POX) subfamily, TPP-binding module; composed of
proteins similar to Lactobacillus plantarum POX, which
plays a key role in controlling acetate production under
aerobic conditions. POX decarboxylates pyruvate,
producing hydrogen peroxide and the energy-storage
metabolite acetylphosphate. It requires FAD in addition
to TPP and a divalent cation as cofactors.
Length = 178
Score = 63.3 bits (155), Expect = 2e-11
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 175 GTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIV 234
G TMG GL A+AA L P ++V+ + GD F +L T V+Y LPVI+V+
Sbjct: 48 GLLATMGNGLPGAIAAKLAY----PDRQVIALSGDGGFAMLMGDLITAVKYNLPVIVVVF 103
Query: 235 NNN 237
NN+
Sbjct: 104 NNS 106
>gnl|CDD|132915 cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding domain of
thiamine pyrophosphate (TPP)-dependent enzymes.
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR)
binding domain; found in many key metabolic enzymes
which use TPP (also known as thiamine diphosphate) as a
cofactor. TPP binds in the cleft formed by a PYR domain
and a PP domain. The PYR domain, binds the
aminopyrimidine ring of TPP, the PP domain binds the
diphosphate residue. A polar interaction between the
conserved glutamate of the PYR domain and the N1' of the
TPP aminopyrimidine ring is shared by most TPP-dependent
enzymes, and participates in the activation of TPP. The
PYR and PP domains have a common fold, but do not share
strong sequence conservation. The PP domain is not
included in this group. Most TPP-dependent enzymes have
the PYR and PP domains on the same subunit although
these domains can be alternatively arranged in the
primary structure. In the case of 2-oxoisovalerate
dehydrogenase (2OXO), sulfopyruvate decarboxylase
(ComDE), and the E1 component of human pyruvate
dehydrogenase complex (E1- PDHc) the PYR and PP domains
appear on different subunits. TPP-dependent enzymes are
multisubunit proteins, the smallest catalytic unit being
a dimer-of-active sites. For many of these enzymes the
active sites lie between PP and PYR domains on different
subunits. However, for the homodimeric enzymes
1-deoxy-D-xylulose 5-phosphate synthase (DXS) and
Desulfovibrio africanus pyruvate:ferredoxin
oxidoreductase (PFOR), each active site lies at the
interface of the PYR and PP domains from the same
subunit.
Length = 154
Score = 60.1 bits (146), Expect = 2e-10
Identities = 32/158 (20%), Positives = 62/158 (39%), Gaps = 7/158 (4%)
Query: 271 QVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLT 327
A+ L G+ +VFG G +++ + + +E A AA
Sbjct: 1 AAFAEVLTAWGVRHVFGYPGDEISSLLDALRE--GDKRIIDTVIHELGAAGAAAGYARAG 58
Query: 328 KKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPY 387
P V +V SG GLL+ G+A+A P++ + G+ + FQ + + R
Sbjct: 59 G-PPVVIVTSGTGLLNAINGLADAAAEHLPVVFLIGARGISAQAKQTFQSMFDLGMYRSI 117
Query: 388 CKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPA 425
+ + P+ + ++ A+R + + G + P
Sbjct: 118 PEANISSPSPAELPAGIDHAIR-TAYASQGPVVVRLPR 154
Score = 55.0 bits (133), Expect = 9e-09
Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 6/131 (4%)
Query: 13 QVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLT 69
A+ L G+ +VFG G +++ + + +E A AA
Sbjct: 1 AAFAEVLTAWGVRHVFGYPGDEISSLLDALRE--GDKRIIDTVIHELGAAGAAAGYARAG 58
Query: 70 KKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPY 129
P V +V SG GLL+ G+A+A P++ + G+ + FQ + + R
Sbjct: 59 G-PPVVIVTSGTGLLNAINGLADAAAEHLPVVFLIGARGISAQAKQTFQSMFDLGMYRSI 117
Query: 130 CKYSARPPNIH 140
+ + P+
Sbjct: 118 PEANISSPSPA 128
>gnl|CDD|238971 cd02013, TPP_Xsc_like, Thiamine pyrophosphate (TPP) family,
Xsc-like subfamily, TPP-binding module; composed of
proteins similar to Alcaligenes defragrans
sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a
key role in the degradation of taurine, catalyzing the
desulfonation of 2-sulfoacetaldehyde into sulfite and
acetyl phosphate. This enzyme requires TPP and divalent
metal ions for activity.
Length = 196
Score = 59.1 bits (143), Expect = 9e-10
Identities = 41/147 (27%), Positives = 62/147 (42%), Gaps = 28/147 (19%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PR + +FG G+AL A + AP + VV + GD A+G S ME+ T VR++L
Sbjct: 43 PRSFIAPLSFGN----CGYALPAIIGAKAAAPDRPVVAIAGDGAWGMSMMEIMTAVRHKL 98
Query: 228 PVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFG 287
PV V+ N W +K N + Y+ ++ ++ F I G
Sbjct: 99 PVTAVVFRN-----------RQWG--AEKKNQVDFYNNRFVGTEL--ESESFAKIAEACG 143
Query: 288 IVGI---------PVIELAMACQQEGI 305
GI P ++ A+A EG
Sbjct: 144 AKGITVDKPEDVGPALQKAIAMMAEGK 170
>gnl|CDD|238963 cd02005, TPP_PDC_IPDC, Thiamine pyrophosphate (TPP) family,
PDC_IPDC subfamily, TPP-binding module; composed of
proteins similar to pyruvate decarboxylase (PDC) and
indolepyruvate decarboxylase (IPDC). PDC, a key enzyme
in alcoholic fermentation, catalyzes the conversion of
pyruvate to acetaldehyde and CO2. It is able to utilize
other 2-oxo acids as substrates. In plants and various
plant-associated bacteria, IPDC plays a role in the
indole-3-pyruvic acid (IPA) pathway, a
tryptophan-dependent biosynthetic route to
indole-3-acetaldehyde (IAA). IPDC catalyzes the
decarboxylation of IPA to IAA. Both PDC and IPDC depend
on TPP and Mg2+ as cofactors.
Length = 183
Score = 57.5 bits (140), Expect = 3e-09
Identities = 21/54 (38%), Positives = 35/54 (64%)
Query: 185 GFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNG 238
G+++ AAL AP +RV+ + GD +F + EL T++RY L I+ ++NN+G
Sbjct: 53 GYSVPAALGAALAAPDRRVILLVGDGSFQMTVQELSTMIRYGLNPIIFLINNDG 106
Score = 33.7 bits (78), Expect = 0.30
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 28/97 (28%)
Query: 959 LPVILVIVNNNG------IYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFG 1012
L I+ ++NN+G I+G EA+Y I + Y K+ VFG
Sbjct: 95 LNPIIFLINNDGYTIERAIHGP--EASYNDI----------------ANWNYTKLPEVFG 136
Query: 1013 ----HDGYLCTTVPQIKQAMKKCLQTTTRPSLINILI 1045
+ T ++ +A+K L + SLI +++
Sbjct: 137 GGGGGLSFRVKTEGELDEALKDALFNRDKLSLIEVIL 173
>gnl|CDD|238960 cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) family, BFDC
subfamily, TPP-binding module; composed of proteins
similar to Pseudomonas putida benzoylformate
decarboxylase (BFDC). P. putida BFDC plays a role in the
mandelate pathway, catalyzing the conversion of
benzoylformate to benzaldehyde and carbon dioxide. This
enzyme is dependent on TPP and a divalent metal cation
as cofactors.
Length = 178
Score = 56.8 bits (138), Expect = 4e-09
Identities = 35/123 (28%), Positives = 49/123 (39%), Gaps = 17/123 (13%)
Query: 163 LLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL 222
L G +G GL A+ AAL P ++VV + GD +F ++ L T
Sbjct: 34 QLPLTRPGSYFTLRGGGLGWGLPAAVGAALAN----PDRKVVAIIGDGSFMYTIQALWTA 89
Query: 223 VRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGI 282
RY LPV +VI+NN G YG +S + E N L GI
Sbjct: 90 ARYGLPVTVVILNNRG-YG------------ALRSFLKRVGPEGPGENAPDGLDLLDPGI 136
Query: 283 EYV 285
++
Sbjct: 137 DFA 139
Score = 34.1 bits (79), Expect = 0.18
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 959 LPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLC 1018
LPV +VI+NN G YG E L P + + + FG +
Sbjct: 94 LPVTVVILNNRG-YGALRSFLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERV 152
Query: 1019 TTVPQIKQAMKKCLQTTTRPSLINILI 1045
T ++ +A+++ L P+LI +++
Sbjct: 153 ETPEELDEALREAL-AEGGPALIEVVV 178
>gnl|CDD|226470 COG3961, COG3961, Pyruvate decarboxylase and related thiamine
pyrophosphate-requiring enzymes [Carbohydrate transport
and metabolism / Coenzyme metabolism / General function
prediction only].
Length = 557
Score = 57.3 bits (139), Expect = 3e-08
Identities = 77/357 (21%), Positives = 141/357 (39%), Gaps = 68/357 (19%)
Query: 273 IAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL-TK 328
+ L GI+ +FG+ G + +++ + G+ ++G NE A YAA GY
Sbjct: 10 LFDRLAQLGIKSIFGVPGDYNLSLLDKIYS--VPGLRWVGNANELNAAYAAD--GYARLN 65
Query: 329 KPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGS---CAQD-----HE--GIGGFQEC 378
+ G G L G+A + P++ I G AQ H G G F+
Sbjct: 66 GISALVTTFGVGELSALNGIAGSYAEHVPVVHIVGVPTTSAQASGLLLHHTLGDGDFKV- 124
Query: 379 PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFG--KPGVSYLDFPANLLAQRINQSA 436
+++ A +I+ + +++ +R + +P Y+ PA++ I +
Sbjct: 125 -FHRMSKEITCAQAMLTDINTAPREIDRVIR-TALKQRRPV--YIGLPADVADLPIE-AP 179
Query: 437 LVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLI 496
L P L+ + P L + I E LI
Sbjct: 180 LTPLDLQLKTSDP----EALSEVIDTIAE-----------------------------LI 206
Query: 497 LEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPN-------CVS 549
+AK P+++ + E EL +N+ P PMGKGV+ ++HPN +S
Sbjct: 207 NKAKKPVILADALVSRFGLEKELKKLINATGFPVATLPMGKGVIDESHPNYLGVYNGKLS 266
Query: 550 AARTH-ALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAV 605
A+++ADL+L +G L G ++K II++ ++ ++ ++V +
Sbjct: 267 EPEVREAVESADLILTIGVLLTDFNTGGFTYQYKPA-NIIEIHPDSVKIKDAVFTNL 322
Score = 45.8 bits (109), Expect = 1e-04
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNN 236
+G++G L AL AAL AP +RV+ GD + + E+ T++R+ L I+ ++NN
Sbjct: 410 WGSIGYTLPAALGAALA----APDRRVILFIGDGSLQLTVQEISTMIRWGLKPIIFVLNN 465
Query: 237 NG 238
+G
Sbjct: 466 DG 467
>gnl|CDD|235931 PRK07092, PRK07092, benzoylformate decarboxylase; Reviewed.
Length = 530
Score = 52.7 bits (127), Expect = 7e-07
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 172 LDAGTFGTMGVG-LGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVI 230
G+F TM G LG+ L AA+ PG+RV+ + GD + +S L + + +LPV
Sbjct: 396 RRQGSFYTMASGGLGYGLPAAVGVALAQPGRRVIGLIGDGSAMYSIQALWSAAQLKLPVT 455
Query: 231 LVIVNNNGIYG 241
VI+NN YG
Sbjct: 456 FVILNNGR-YG 465
Score = 37.2 bits (87), Expect = 0.041
Identities = 77/331 (23%), Positives = 120/331 (36%), Gaps = 81/331 (24%)
Query: 320 AQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECP 379
AQA T + S G+ + G + A N P+++ G Q I F+ P
Sbjct: 68 AQA----TGNAAFVNLHSAAGVGNAMGNLFTAFKNHTPLVITAG---QQARSILPFE--P 118
Query: 380 ------QVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYL-------DFPAN 426
EL +PY K+S P + + +A ++ G ++ D PA
Sbjct: 119 FLAAVQAAELPKPYVKWSIEPARAEDVPAAIARAYHIAMQPPRGPVFVSIPYDDWDQPAE 178
Query: 427 LLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGI 486
L R SA+ P P L A L A + A+ P +++G P +
Sbjct: 179 PLPARTVSSAVRPDPAAL---------ARLGDA---LDAARRPALVVG---------PAV 217
Query: 487 AE---LKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPT--PMGKGVVP 541
A RL +AP+ + A S F P P+ G +P
Sbjct: 218 DRAGAWDDAVRLAERHRAPVWV-----APM-----------SGRCSF-PEDHPLFAGFLP 260
Query: 542 DAHPNCVSAARTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSV 601
A +SA L DLVL++GA + G P +++Q+ + E
Sbjct: 261 -ASREKISAL----LDGHDLVLVIGAPVFTYHVEGPGPHLPEGAELVQLTDDPGE----- 310
Query: 602 QAAV-----AIQSDVRLTVQQLKQMLSHTQR 627
AA AI D+RL ++ L +L + R
Sbjct: 311 -AAWAPMGDAIVGDIRLALRDLLALLPPSAR 340
>gnl|CDD|238964 cd02006, TPP_Gcl, Thiamine pyrophosphate (TPP) family, Gcl
subfamily, TPP-binding module; composed of proteins
similar to Escherichia coli glyoxylate carboligase
(Gcl). E. coli glyoxylate carboligase, plays a key role
in glyoxylate metabolism where it catalyzes the
condensation of two molecules of glyoxylate to give
tartronic semialdehyde and carbon dioxide. This enzyme
requires TPP, magnesium ion and FAD as cofactors.
Length = 202
Score = 46.9 bits (111), Expect = 1e-05
Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 29/138 (21%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PRH ++ G G LG+ + AAL P ++VV + GD F F EL ++R+
Sbjct: 47 PRHWINCGQAGP----LGWTVPAALGVAAADPDRQVVALSGDYDFQFMIEELAVGAQHRI 102
Query: 228 PVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGI----E 283
P I V+VNN A+L +I+++ + D D +++ L F+ I
Sbjct: 103 PYIHVLVNN------------AYLGLIRQAQRAFDMDYQVN--------LAFENINSSEL 142
Query: 284 YVFGIVGIPVIELAMACQ 301
+G+ + V E + C+
Sbjct: 143 GGYGVDHVKVAE-GLGCK 159
>gnl|CDD|181344 PRK08273, PRK08273, thiamine pyrophosphate protein; Provisional.
Length = 597
Score = 46.4 bits (111), Expect = 7e-05
Identities = 81/387 (20%), Positives = 155/387 (40%), Gaps = 74/387 (19%)
Query: 281 GIEYVFGIVG--IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSG 338
G+ VFG G I + A+ + ++ R+E+ A + A A T + GVCL SG
Sbjct: 17 GVRRVFGYPGDGINGLLGALGRADDKPEFVQARHEEMAAFMAVAHAKFTGEVGVCLATSG 76
Query: 339 PGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGG-FQECPQVEL-------ARPYCKY 390
PG +H G+ +A+++ P++ I G Q +GG +Q+ +V+L A + +
Sbjct: 77 PGAIHLLNGLYDAKLDHVPVVAIVGQ--QARAALGGHYQQ--EVDLQSLFKDVAGAFVQM 132
Query: 391 SARPPNI-HLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEPTLP 449
P + HL V++AVR + + V+ + P ++ Q P T+
Sbjct: 133 VTVPEQLRHL----VDRAVR-TALAERTVTAVILPNDV------QELEYEPPPHAHGTVH 181
Query: 450 -WPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVIIGK 508
G P V+ P +L++A+ ++ + +++G
Sbjct: 182 SGVGYT-------------RPRVV-----------PYDEDLRRAAEVLNAGRKVAILVGA 217
Query: 509 GAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAA---RTHA----LQNADL 561
GA A E+++ +GK +PD P + T ++ D
Sbjct: 218 GAL--GATDEVIAVAERLGAGVAKALLGKAALPDDLPWVTGSIGLLGTKPSYELMRECDT 275
Query: 562 VLLLGARL---NWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQL 618
+L++G+ ++ G+A + +Q+D++ L V + D T++ L
Sbjct: 276 LLMVGSSFPYSEFLPKEGQA-------RGVQIDIDGRMLGLRYPMEVNLVGDAAETLRAL 328
Query: 619 KQMLSHTQ-RNWS---FSATSPWWQEL 641
+L + R+W + WW+ L
Sbjct: 329 LPLLERKKDRSWRERIEKWVARWWETL 355
Score = 45.7 bits (109), Expect = 1e-04
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 19/140 (13%)
Query: 23 GIEYVFGIVG--IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSG 80
G+ VFG G I + A+ + ++ R+E+ A + A A T + GVCL SG
Sbjct: 17 GVRRVFGYPGDGINGLLGALGRADDKPEFVQARHEEMAAFMAVAHAKFTGEVGVCLATSG 76
Query: 81 PGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGG-FQECPQVEL-------ARPYCKY 132
PG +H G+ +A+++ P++ I G Q +GG +Q+ +V+L A + +
Sbjct: 77 PGAIHLLNGLYDAKLDHVPVVAIVGQ--QARAALGGHYQQ--EVDLQSLFKDVAGAFVQM 132
Query: 133 SARPPNI-HLIGQHVEKAVR 151
P + HL V++AVR
Sbjct: 133 VTVPEQLRHL----VDRAVR 148
Score = 35.7 bits (83), Expect = 0.15
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 13/70 (18%)
Query: 175 GTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGM-ELETLVRY-------R 226
GT TMG + +A+AA H P + V+ + GD A +GM EL T+ +Y R
Sbjct: 412 GTLATMGPAVPYAIAAKF--AH--PDRPVIALVGDGAMQMNGMAELITVAKYWRQWSDPR 467
Query: 227 LPVILVIVNN 236
L ++LV+ N
Sbjct: 468 L-IVLVLNNR 476
>gnl|CDD|236063 PRK07586, PRK07586, hypothetical protein; Validated.
Length = 514
Score = 46.4 bits (111), Expect = 8e-05
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
H T G +G GL A AA+ C P ++V+ +QGD + ++ L T R L
Sbjct: 375 APHDWLTLTGGAIGQGLPLATGAAVAC----PDRKVLALQGDGSAMYTIQALWTQARENL 430
Query: 228 PVILVIVNNNG 238
V VI N
Sbjct: 431 DVTTVIFANRA 441
>gnl|CDD|139002 PRK12474, PRK12474, hypothetical protein; Provisional.
Length = 518
Score = 44.9 bits (106), Expect = 2e-04
Identities = 38/162 (23%), Positives = 61/162 (37%), Gaps = 9/162 (5%)
Query: 271 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRN-----EQAACYAAQAIGY 325
+ L G+E F G + A + MR E AA G
Sbjct: 9 DSVVDTLLNCGVEVCFANPGTSEMHFVAALDRVP----RMRPVLCLFEGVVTGAADGYGR 64
Query: 326 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 385
+ KP V L+ GPGL + + NA+ P++ I G A +H AR
Sbjct: 65 IAGKPAVTLLHLGPGLANGLANLHNARRAASPIVNIVGDHAVEHLQYDAPLTSDIDGFAR 124
Query: 386 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANL 427
P ++ R + + V +AV+ + G++ L PA++
Sbjct: 125 PVSRWVHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADV 166
Score = 41.8 bits (98), Expect = 0.002
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 176 TFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVN 235
T G++G GL A AA+ P ++VVC QGD ++ L T+ R L V +VI
Sbjct: 387 TGGSIGQGLPLAAGAAVAA----PDRKVVCPQGDGGAAYTMQALWTMARENLDVTVVIFA 442
Query: 236 N 236
N
Sbjct: 443 N 443
Score = 39.1 bits (91), Expect = 0.013
Identities = 36/157 (22%), Positives = 57/157 (36%), Gaps = 9/157 (5%)
Query: 13 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRN-----EQAACYAAQAIGY 67
+ L G+E F G + A + MR E AA G
Sbjct: 9 DSVVDTLLNCGVEVCFANPGTSEMHFVAALDRVP----RMRPVLCLFEGVVTGAADGYGR 64
Query: 68 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 127
+ KP V L+ GPGL + + NA+ P++ I G A +H AR
Sbjct: 65 IAGKPAVTLLHLGPGLANGLANLHNARRAASPIVNIVGDHAVEHLQYDAPLTSDIDGFAR 124
Query: 128 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLL 164
P ++ R + + V +AV+ + G + L+
Sbjct: 125 PVSRWVHRSASAGAVDSDVARAVQAAQSAPGGIATLI 161
>gnl|CDD|132921 cd07038, TPP_PYR_PDC_IPDC_like, Pyrimidine (PYR) binding domain of
pyruvate decarboxylase (PDC), indolepyruvate
decarboxylase (IPDC) and related proteins. Thiamine
pyrophosphate (TPP family), pyrimidine (PYR) binding
domain of pyruvate decarboxylase (PDC) and
indolepyruvate decarboxylase (IPDC) subfamily. The PYR
domain is found in many key metabolic enzymes which use
TPP (also known as thiamine diphosphate) as a cofactor.
TPP binds in the cleft formed by a PYR domain and a PP
domain. The PYR domain, binds the aminopyrimidine ring
of TPP, the PP domain binds the diphosphate residue. The
PYR and PP domains have a common fold, but do not share
strong sequence conservation. The PP domain is not
included in this sub-family. Most TPP-dependent enzymes
have the PYR and PP domains on the same subunit although
these domains can be alternatively arranged in the
primary structure. TPP-dependent enzymes are
multisubunit proteins, the smallest catalytic unit being
a dimer-of-active sites, for many the active sites lie
between PP and PYR domains on different subunits. PDC
catalyzes the conversion of pyruvate to acetaldehyde and
CO2 in alcoholic fermentation. IPDC plays a role in the
indole-3-pyruvic acid (IPA) pathway in plants and
various plant-associated bacteria, it catalyzes the
decarboxylation of IPA to IAA. Also belonging to this
group is Mycobacterium tuberculosis alpha-keto acid
decarboxylase (MtKDC) which participates in amino acid
degradation via the Ehrlich pathway, and Lactococcus
lactis branched-chain keto acid decarboxylase (KdcA) an
enzyme identified as being involved in cheese ripening,
which exhibits a very broad substrate range in the
decarboxylation and carboligation reactions.
Length = 162
Score = 41.3 bits (98), Expect = 5e-04
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 13 QVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL- 68
+ + + LK G+++VFG+ G +P+++ + G+ ++G NE A YAA GY
Sbjct: 1 EYLLERLKQLGVKHVFGVPGDYNLPLLD--AIEENPGLRWVGNCNELNAGYAAD--GYAR 56
Query: 69 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGS 106
K G + G G L G+A A P++ I G+
Sbjct: 57 VKGLGALVTTYGVGELSALNGIAGAYAEHVPVVHIVGA 94
Score = 41.3 bits (98), Expect = 5e-04
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 271 QVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL- 326
+ + + LK G+++VFG+ G +P+++ + G+ ++G NE A YAA GY
Sbjct: 1 EYLLERLKQLGVKHVFGVPGDYNLPLLD--AIEENPGLRWVGNCNELNAGYAAD--GYAR 56
Query: 327 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGS 364
K G + G G L G+A A P++ I G+
Sbjct: 57 VKGLGALVTTYGVGELSALNGIAGAYAEHVPVVHIVGA 94
>gnl|CDD|132435 TIGR03394, indol_phenyl_DC, indolepyruvate/phenylpyruvate
decarboxylase, Azospirillum family. A family of closely
related, thiamine pyrophosphate-dependent enzymes
includes indolepyruvate decarboxylase (EC 4.1.1.74),
phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate
decarboxylase (EC 4.1.1.1), branched-chain
alpha-ketoacid decarboxylase, etc.. Members of this
group of homologs may overlap in specificity. This model
represents a clade that includes a Azospirillum
brasilense member active as both phenylpyruvate
decarboxylase and indolepyruvate decarboxylase.
Length = 535
Score = 43.3 bits (102), Expect = 6e-04
Identities = 67/314 (21%), Positives = 116/314 (36%), Gaps = 59/314 (18%)
Query: 275 QALKFQGIEYVFGIVGIPVIELAMACQQEGI-HYIGMRNEQAACYAAQAIGYLTKKPGVC 333
+ALK +G + +FGI G + ++ GI + +E A +AA A GV
Sbjct: 8 RALKDRGAQEMFGIPGDFALPFFKVIEETGILPLHTLSHEPAVGFAADAAARYRGTLGVA 67
Query: 334 LVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSAR 393
V G G + +A A P++VI G+ EG G
Sbjct: 68 AVTYGAGAFNMVNAIAGAYAEKSPVVVISGAPGT-TEGNAGLL----------------- 109
Query: 394 PPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQ--RINQSALVPTPKVLEPTLPWP 451
+H G+ ++ ++ + LD PA A+ R+ SA E + P
Sbjct: 110 ---LHHQGRTLDSQFQVFKEVTCDQAVLDDPATAPAEIARVLGSA-------RELSRP-- 157
Query: 452 GIAELKQASQLILEAKAPLVIIGKVLEPTLP-WPG-IAELKQASRLILE----AKAPLVI 505
L+ ++ P+ P P WP L + +L A +P+++
Sbjct: 158 --VYLEIPRDMVNAEVEPV--------PDDPAWPVDRDALDACADEVLARMRSATSPVMM 207
Query: 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVS---------AARTHAL 556
+ E ++ +P + T MG+G++ DA P A + +
Sbjct: 208 VCVEVRRYGLEAKVAELAQRLGVPVVTTFMGRGLLADA-PTPPLGTYLGVAGDAELSRLV 266
Query: 557 QNADLVLLLGARLN 570
+ +D +LLLG L+
Sbjct: 267 EESDGLLLLGVILS 280
Score = 38.0 bits (88), Expect = 0.028
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 175 GTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIV 234
G + MG G+ + A GKR++ + GD AF +G EL R + I+++
Sbjct: 400 GYYAGMGFGVPAGIGAQC-----TSGKRILTLVGDGAFQMTGWELGNCRRLGIDPIVILF 454
Query: 235 NN 236
NN
Sbjct: 455 NN 456
Score = 37.6 bits (87), Expect = 0.037
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
Query: 17 QALKFQGIEYVFGIVGIPVIELAMACQQEGI-HYIGMRNEQAACYAAQAIGYLTKKPGVC 75
+ALK +G + +FGI G + ++ GI + +E A +AA A GV
Sbjct: 8 RALKDRGAQEMFGIPGDFALPFFKVIEETGILPLHTLSHEPAVGFAADAAARYRGTLGVA 67
Query: 76 LVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGF 117
V G G + +A A P++VI G+ EG G
Sbjct: 68 AVTYGAGAFNMVNAIAGAYAEKSPVVVISGAPGT-TEGNAGL 108
>gnl|CDD|232855 TIGR00173, menD,
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
carboxylic-acid synthase. MenD was thought until
recently to act as SHCHC synthase, but has recently been
shown to act instead as SEPHCHC synthase. Conversion of
SEPHCHC into SHCHC and pyruvate may occur spontaneously
but is catalyzed efficiently, at least in some
organisms, by MenH (see TIGR03695). 2-oxoglutarate
decarboxylase/SHCHC synthase (menD) is a thiamine
pyrophosphate enzyme involved in menaquinone
biosynthesis [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 430
Score = 41.8 bits (99), Expect = 0.001
Identities = 68/344 (19%), Positives = 118/344 (34%), Gaps = 68/344 (19%)
Query: 327 TKKPGVCLVV-SGPGLLHTFGGMANAQINCWPMLVIGGSCAQD--HE--GIGGFQECPQV 381
+ +P V +V SG + + + A + P++V+ D E G G Q Q
Sbjct: 60 SGRP-VAVVCTSGTAVANLLPAVIEAYYSGVPLIVLTA----DRPPELRGCGANQTIDQP 114
Query: 382 ELARPYCKYSA--RPPNIHL----IGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQS 435
L Y ++S P + V++AV + PG +++ P +
Sbjct: 115 GLFGSYVRWSVDLPLPEADEPLRYLRSTVDRAVAQAQGAPPGPVHINVP---FRE----- 166
Query: 436 ALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRL 495
L P P +L+P PW V P L + +L
Sbjct: 167 PLYPDP-LLQPLQPW----------------LRSGVPTVSTGPPVLDPESLDDLWDR--- 206
Query: 496 ILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHA 555
+ +AK L+I G A AE L + + P L P+ G+ HP +
Sbjct: 207 LRQAKRGLIIAGPLAGAEDAE-ALAALAEALGWPLLADPLS-GLRGGPHPLVIDHYDL-L 263
Query: 556 LQNADLVLLLGARLNWILHFGRAP------RF--KSNVKIIQVDLNAE---ELHNSVQAA 604
L NA+L L L ++ FG P ++ + + VD + H++
Sbjct: 264 LANAELREELQPDL--VIRFGGPPVSKRLRQWLARQPAEYWVVDPDGGWLDPFHHATT-- 319
Query: 605 VAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 648
+++ + L +L + W W E + K +
Sbjct: 320 -RLEASPAAFAEALAGLLKNPAAAW-----LDRWLEAEAKAREA 357
>gnl|CDD|132434 TIGR03393, indolpyr_decarb, indolepyruvate decarboxylase, Erwinia
family. A family of closely related, thiamine
pyrophosphate-dependent enzymes includes indolepyruvate
decarboxylase (EC 4.1.1.74), phenylpyruvate
decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC
4.1.1.1), branched-chain alpha-ketoacid decarboxylase,
etc.. Members of this group of homologs may overlap in
specificity. Within the larger family, this model
represents a clade of bacterial indolepyruvate
decarboxylases, part of a pathway for biosynthesis of
the plant hormone indole-3-acetic acid. Typically, these
species interact with plants, as pathogens or as
beneficial, root-associated bacteria [Central
intermediary metabolism, Other].
Length = 539
Score = 39.5 bits (92), Expect = 0.009
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 184 LGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNG 238
+G+ L AA P +RV+ + GD + + EL +++R + I++++NN G
Sbjct: 406 IGYTLPAAFGAQTACPNRRVILLIGDGSAQLTIQELGSMLRDKQHPIILVLNNEG 460
>gnl|CDD|132340 TIGR03297, Ppyr-DeCO2ase, phosphonopyruvate decarboxylase. This
family consists of examples of phosphonopyruvate an
decarboxylase enzyme that produces phosphonoacetaldehyde
(Pald), the second step in the biosynthesis
phosphonate-containing compounds. Since the preceding
enzymate step, PEP phosphomutase (AepX, TIGR02320)
favors the substrate PEP energetically, the
decarboxylase is required to drive the reaction in the
direction of phosphonate production. Pald is a precursor
of natural products including antibiotics like bialaphos
and phosphonothricin in Streptomyces species,
phosphonate-modified molecules such as the
polysaccharide B of Bacteroides fragilis, the
phosphonolipids of Tetrahymena pyroformis, the
glycosylinositolphospholipids of Trypanosoma cruzi. This
gene generally occurs in prokaryotic organisms adjacent
to the gene for AepX. Most often an aminotansferase
(aepZ) is also present which leads to the production of
the most common phosphonate compound,
2-aminoethylphosphonate (AEP).
Length = 361
Score = 38.9 bits (91), Expect = 0.012
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 21/104 (20%)
Query: 147 EKAVRLSTFGKPGRSL------LLNNLPRHRLDAGTFGTMG----VGLGFALAAALYCNH 196
+ V +ST GK R L + R L T G+MG + LG ALA
Sbjct: 187 DNTVIVSTTGKTSRELYELRDRIGQGHARDFL---TVGSMGHASQIALGLALAR------ 237
Query: 197 YAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIY 240
P +RVVC+ GD A L T+ ++ ++ NNG +
Sbjct: 238 --PDQRVVCLDGDGAALMHMGGLATIGTQGPANLIHVLFNNGAH 279
>gnl|CDD|239468 cd03371, TPP_PpyrDC, Thiamine pyrophosphate (TPP) family, PpyrDC
subfamily, TPP-binding module; composed of proteins
similar to phosphonopyruvate decarboxylase (PpyrDC)
proteins. PpyrDC is a homotrimeric enzyme which
functions in the biosynthesis of C-P compounds such as
bialaphos tripeptide in Streptomyces hygroscopicus.
These proteins require TPP and divalent metal cation
cofactors.
Length = 188
Score = 37.7 bits (88), Expect = 0.015
Identities = 31/102 (30%), Positives = 41/102 (40%), Gaps = 15/102 (14%)
Query: 147 EKAVRLSTFGKPGRSLLL---NNLPRHRLDAGTFGTMG----VGLGFALAAALYCNHYAP 199
A +ST G R L H D T G+MG + LG ALA P
Sbjct: 14 ATAAVVSTTGMTSRELFELRDRPGGGHAQDFLTVGSMGHASQIALGIALAR--------P 65
Query: 200 GKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYG 241
++VVC+ GD A L T+ ++ IV NNG +
Sbjct: 66 DRKVVCIDGDGAALMHMGGLATIGGLAPANLIHIVLNNGAHD 107
>gnl|CDD|238966 cd02008, TPP_IOR_alpha, Thiamine pyrophosphate (TPP) family,
IOR-alpha subfamily, TPP-binding module; composed of
proteins similar to indolepyruvate ferredoxin
oxidoreductase (IOR) alpha subunit. IOR catalyzes the
oxidative decarboxylation of arylpyruvates, such as
indolepyruvate or phenylpyruvate, which are generated by
the transamination of aromatic amino acids, to the
corresponding aryl acetyl-CoA.
Length = 178
Score = 36.1 bits (84), Expect = 0.040
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 15/113 (13%)
Query: 134 ARPPNI------HLIGQHVEKAVRLST--FGKPGRSLLLNNLPRHRLDAGTFGTMGVGLG 185
RPP + + KA + + G G L P + +D T MG +G
Sbjct: 1 PRPPGLCPGCPHRPSFYALRKAFKKDSIVSGDIGCYTLGALPPLNAID--TCTCMGASIG 58
Query: 186 FALAAALYCNHYAPGKRVVCVQGDSAFGFSGME-LETLVRYRLPVILVIVNNN 237
A+ A + K+VV V GDS F SG+ L V + + +VI++N
Sbjct: 59 VAIGMA----KASEDKKVVAVIGDSTFFHSGILGLINAVYNKANITVVILDNR 107
>gnl|CDD|215311 PLN02573, PLN02573, pyruvate decarboxylase.
Length = 578
Score = 35.8 bits (83), Expect = 0.12
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 9/65 (13%)
Query: 175 GTFG-TMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVI 233
G+ G ++G LG+A AA P KRV+ GD +F + ++ T++R I+ +
Sbjct: 428 GSIGWSVGATLGYAQAA--------PDKRVIACIGDGSFQVTAQDVSTMIRCGQKSIIFL 479
Query: 234 VNNNG 238
+NN G
Sbjct: 480 INNGG 484
>gnl|CDD|238974 cd02016, TPP_E1_OGDC_like, Thiamine pyrophosphate (TPP) family, E1
of OGDC-like subfamily, TPP-binding module; composed of
proteins similar to the E1 component of the
2-oxoglutarate dehydrogenase multienzyme complex (OGDC).
OGDC catalyzes the oxidative decarboxylation of
2-oxoglutarate to succinyl-CoA and carbon dioxide, a key
reaction of the tricarboxylic acid cycle.
Length = 265
Score = 35.2 bits (82), Expect = 0.14
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 182 VGLGFALAAALYCNHYAPGKRVVCVQ--GDSAFGFSGMELETLVRYRLP------VILVI 233
V +G A Y +V+ + GD+AF G+ ETL LP I ++
Sbjct: 121 VVMGKTRAKQDYRGDG-ERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIV 179
Query: 234 VNN 236
VNN
Sbjct: 180 VNN 182
>gnl|CDD|238961 cd02003, TPP_IolD, Thiamine pyrophosphate (TPP) family, IolD
subfamily, TPP-binding module; composed of proteins
similar to Rhizobium leguminosarum bv. viciae IolD. IolD
plays an important role in myo-inositol catabolism.
Length = 205
Score = 33.4 bits (77), Expect = 0.35
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 170 HRL-DAGTFGTMGVGLGFA-----LAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLV 223
H+L A T G + G++ +AA L P + V + GD ++ E+ T V
Sbjct: 30 HKLWRARTPGGYHLEYGYSCMGYEIAAGLGAKLAKPDREVYVLVGDGSYLMLHSEIVTAV 89
Query: 224 RYRLPVILVIVNNNG 238
+ L +I+V+ +N+G
Sbjct: 90 QEGLKIIIVLFDNHG 104
>gnl|CDD|226684 COG4231, COG4231, Indolepyruvate ferredoxin oxidoreductase, alpha
and beta subunits [Energy production and conversion].
Length = 640
Score = 33.9 bits (78), Expect = 0.48
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 163 LLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGME-LET 221
L LP T MG +G A + A K++V V GDS F SG+ L
Sbjct: 414 TLGILPPLNTVDTTTM-MGSSIGIAGGLSF-----ASTKKIVAVIGDSTFFHSGILALIN 467
Query: 222 LVRYRLPVILVIVNN 236
V + +++V+++N
Sbjct: 468 AVYNKANILVVVLDN 482
>gnl|CDD|215530 PLN02980, PLN02980, 2-oxoglutarate decarboxylase/ hydro-lyase/
magnesium ion binding / thiamin pyrophosphate binding.
Length = 1655
Score = 33.7 bits (77), Expect = 0.71
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 11/67 (16%)
Query: 174 AGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGF--SGMELETLVRYRLPVIL 231
+G G + +GFA+ CN KRV+CV GD +F +G+ + + R P+ +
Sbjct: 761 SGIDGLLSTAIGFAVG----CN-----KRVLCVVGDISFLHDTNGLSILSQRIARKPMTI 811
Query: 232 VIVNNNG 238
+++NN+G
Sbjct: 812 LVINNHG 818
>gnl|CDD|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex,
dehydrogenase (E1) component, eukaryotic type, alpha
subunit [Energy production and conversion].
Length = 358
Score = 32.6 bits (75), Expect = 1.0
Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 20/77 (25%)
Query: 173 DAGTFGTMG-VGLGFALAA-ALYCNHYAPGKRVVCV---------QGD--SAFGFSGMEL 219
+ G G G VG LAA A Y K V V QGD A F+ +
Sbjct: 128 EKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAV-- 185
Query: 220 ETLVRYRLPVILVIVNN 236
++LPV+ VI NN
Sbjct: 186 -----WKLPVVFVIENN 197
>gnl|CDD|238967 cd02009, TPP_SHCHC_synthase, Thiamine pyrophosphate (TPP) family,
SHCHC synthase subfamily, TPP-binding module; composed
of proteins similar to Escherichia coli
2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic
acid (SHCHC) synthase (also called MenD). SHCHC synthase
plays a key role in the menaquinone biosynthetic
pathway, converting isochorismate and 2-oxoglutarate to
SHCHC, pyruvate and carbon dioxide. The enzyme requires
TPP and a divalent metal cation for activity.
Length = 175
Score = 31.8 bits (73), Expect = 1.0
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 12/68 (17%)
Query: 178 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNN 237
GT+ LG ALA K V + GD +F L + L + +V++NNN
Sbjct: 55 GTLSTALGIALAT---------DKPTVLLTGDLSFLHDLNGLLLGKQEPLNLTIVVINNN 105
Query: 238 GIYGG-FD 244
G GG F
Sbjct: 106 G--GGIFS 111
>gnl|CDD|172445 PRK13932, PRK13932, stationary phase survival protein SurE;
Provisional.
Length = 257
Score = 30.9 bits (70), Expect = 2.9
Identities = 37/101 (36%), Positives = 46/101 (45%), Gaps = 20/101 (19%)
Query: 960 PVILVIVNNNGIYGGFDEATYASIVESGEVTTVSP--PTS-------LGPSLR---YEKM 1007
P ILV N++GI G AS+ + G VT V+P P S LG LR Y+K
Sbjct: 6 PHILV-CNDDGIEGEGIHVLAASMKKIGRVTVVAPAEPHSGMSHAMTLGVPLRIKEYQKN 64
Query: 1008 MAVFGH--DGYLCTTVPQIKQAMKKCLQTTTRPSLINILIN 1046
FG+ G T V IK A+ L +P LI IN
Sbjct: 65 NRFFGYTVSG---TPVDCIKVALSHIL--PEKPDLIVSGIN 100
>gnl|CDD|177069 CHL00149, odpA, pyruvate dehydrogenase E1 component alpha subunit;
Reviewed.
Length = 341
Score = 31.0 bits (70), Expect = 3.5
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 21/140 (15%)
Query: 138 NIHLIGQHV-EKAVRLSTFGKP-------GRSLLLNNLPRHRLDAGTFGTMGVGLGFALA 189
++H + + V K V FGK G S+ + + P H G F +G G+ AL
Sbjct: 82 HVHALSKGVPPKNVMAELFGKETGCSRGRGGSMHIFSAP-HNF-LGGFAFIGEGIPIALG 139
Query: 190 AA---LY----CNHYAPGKRVVCVQGDSAFGFSGMELETL---VRYRLPVILVIVNNNGI 239
AA +Y P + C GD +G E L V ++LP+I V+ NN
Sbjct: 140 AAFQSIYRQQVLKEVQPLRVTACFFGDGTTN-NGQFFECLNMAVLWKLPIIFVVENNQWA 198
Query: 240 YGGFDEATYAWLDIIKKSNM 259
G + + +I KK+
Sbjct: 199 IGMAHHRSTSIPEIHKKAEA 218
>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase;
Provisional.
Length = 347
Score = 30.6 bits (69), Expect = 4.5
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 470 LVIIGKVLEPTLPWPGIAELKQASRLILEAK---APLVIIGKGAAYSQAE 516
L +IG + + PWPG E + ASRL+ E K PL I +G+ S A+
Sbjct: 281 LTVIGSWMNYSSPWPGQ-EWETASRLLTERKLSLEPL-IAHRGSFESFAQ 328
>gnl|CDD|132917 cd07034, TPP_PYR_PFOR_IOR-alpha_like, Pyrimidine (PYR) binding
domain of pyruvate ferredoxin oxidoreductase (PFOR),
indolepyruvate ferredoxin oxidoreductase alpha subunit
(IOR-alpha), and related proteins. Thiamine
pyrophosphate (TPP family), pyrimidine (PYR) binding
domain, of pyruvate ferredoxin oxidoreductase (PFOR),
indolepyruvate ferredoxin oxidoreductase (IOR) alpha
subunit (IOR-alpha), and related proteins, subfamily.
The PYR domain is found in many key metabolic enzymes
which use TPP (also known as thiamine diphosphate) as a
cofactor. TPP binds in the cleft formed by a PYR domain
and a PP domain. The PYR domain, binds the
aminopyrimidine ring of TPP, the PP domain binds the
diphosphate residue. A polar interaction between the
conserved glutamate of the PYR domain and the N1' of
the TPP aminopyrimidine ring is shared by most
TPP-dependent enzymes, and participates in the
activation of TPP. The PYR and PP domains have a common
fold, but do not share strong sequence conservation.
The PP domain is not included in this sub-family. Most
TPP-dependent enzymes have the PYR and PP domains on
the same subunit although these domains can be
alternatively arranged in the primary structure.
TPP-dependent enzymes are multisubunit proteins, the
smallest catalytic unit being a dimer-of-active sites.
For many of these enzymes the active sites lie between
PP and PYR domains on different subunits. However, for
the homodimeric enzyme Desulfovibrio africanus
pyruvate:ferredoxin oxidoreductase (PFOR), each active
site lies at the interface of the PYR and PP domains
from the same subunit. This subfamily includes proteins
characterized as pyruvate NADP+ oxidoreductase (PNO).
PFOR and PNO catalyze the oxidative decarboxylation of
pyruvate to form acetyl-CoA, a crucial step in many
metabolic pathways. The facultative anaerobic
mitochondrion of the photosynthetic protist Euglena
gracilis oxidizes pyruvate with PNO. IOR catalyzes the
oxidative decarboxylation of arylpyruvates, such as
indolepyruvate or phenylpyruvate.
Length = 160
Score = 29.4 bits (67), Expect = 6.2
Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 13/81 (16%)
Query: 12 NQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-----EGIHYIGMRNEQAA---CYAAQ 63
N+ +A+ G++ V P E+A + G + +E AA A
Sbjct: 2 NEAVARGALAAGVDVVAAYPITPSTEIAETLAKAVLGELGGVVVQAESEHAAAEAAIGAS 61
Query: 64 AIGYLTKKPGVCLVVSGPGLL 84
A G SGPGL
Sbjct: 62 AAGAR-----AMTATSGPGLN 77
Score = 29.4 bits (67), Expect = 6.2
Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 13/81 (16%)
Query: 270 NQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-----EGIHYIGMRNEQAA---CYAAQ 321
N+ +A+ G++ V P E+A + G + +E AA A
Sbjct: 2 NEAVARGALAAGVDVVAAYPITPSTEIAETLAKAVLGELGGVVVQAESEHAAAEAAIGAS 61
Query: 322 AIGYLTKKPGVCLVVSGPGLL 342
A G SGPGL
Sbjct: 62 AAGAR-----AMTATSGPGLN 77
>gnl|CDD|234139 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component,
alpha subunit. Members of this protein family are the
alpha subunit of the E1 component of pyruvate
dehydrogenase (PDH). This model represents one branch of
a larger family that E1-alpha proteins from
2-oxoisovalerate dehydrogenase, acetoin dehydrogenase,
another PDH clade, etc [Energy metabolism, Pyruvate
dehydrogenase].
Length = 315
Score = 29.8 bits (68), Expect = 8.5
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 175 GTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSA-----FGFSGMELETLVRYRLPV 229
G G +G + A A + C GD A F + + L ++LPV
Sbjct: 107 GGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQF-YESFNMAAL--WKLPV 163
Query: 230 ILVIVNN 236
I VI NN
Sbjct: 164 IFVIENN 170
>gnl|CDD|129415 TIGR00315, cdhB, CO dehydrogenase/acetyl-CoA synthase complex,
epsilon subunit. Nomenclature follows the description
for Methanosarcina thermophila. The complex is also
found in Archaeoglobus fulgidus, not considered a
methanogen, but is otherwise generally associated with
methanogenesis [Energy metabolism, Chemoautotrophy].
Length = 162
Score = 29.1 bits (65), Expect = 8.5
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 486 IAELKQASRLILEAKAPLVIIGKGAAYSQAETELLS-FVNSFNLPFLPTP 534
+ K + +I AK PL+I+G E EL+ F+ F+LP + T
Sbjct: 14 LVSPKLVAMMIKRAKRPLLIVG-PENLEDEEKELIVKFIEKFDLPVVATA 62
>gnl|CDD|180576 PRK06463, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase;
Provisional.
Length = 255
Score = 29.4 bits (66), Expect = 9.2
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 19/83 (22%)
Query: 652 KLPVILVIVNNNGI-----YGGFDETTYASIVE---SGEVTTV---LP--------VILV 692
+ + V+VNN GI + FDE Y +++ +G + T LP I+
Sbjct: 76 EFGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVN 135
Query: 693 IVNNNGIYGGFDETTYASIVESG 715
I +N GI + TT+ +I ++G
Sbjct: 136 IASNAGIGTAAEGTTFYAITKAG 158
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.407
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 55,055,463
Number of extensions: 5673023
Number of successful extensions: 5641
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5340
Number of HSP's successfully gapped: 281
Length of query: 1065
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 958
Effective length of database: 6,191,724
Effective search space: 5931671592
Effective search space used: 5931671592
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (28.4 bits)