RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14416
(1065 letters)
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate,
flavoprotein, lyase, thiamine pyrophosphate; HET: TZD
ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3
c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A*
2jib_A*
Length = 568
Score = 311 bits (799), Expect = 1e-94
Identities = 129/396 (32%), Positives = 201/396 (50%), Gaps = 40/396 (10%)
Query: 259 MSEDYD-EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAAC 317
MS D + E V+ ALK I+ ++G+VGIP+ LA Q +G + R+EQ A
Sbjct: 1 MSNDDNVELTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAG 60
Query: 318 YAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGG--F 375
YAA GY+ KPGVCL VS PG L+ +A+A NC+PM+++ GS ++ + +
Sbjct: 61 YAASIAGYIEGKPGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSEREIVDLQQGDY 120
Query: 376 QECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQS 435
+E Q+ +ARP+CK S R +I I + +AVR + G+PG Y+D PA L Q I+
Sbjct: 121 EEMDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAKLFGQTISVE 180
Query: 436 ALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRL 495
+ +P P P P + +A+ L
Sbjct: 181 E--ANKLLFKPIDPAPAQI-----------------------------PAEDAIARAADL 209
Query: 496 ILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHA 555
I AK P++++GKGAAY+Q + E+ + V +PFLP M KG++PD HP +A R A
Sbjct: 210 IKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPFLPMGMAKGLLPDNHPQSAAATRAFA 269
Query: 556 LQNADLVLLLGARLNWILHFGRAPRFKSNV-KIIQVDLNAEELHNSVQAAVAIQSDVRLT 614
L D+ +L+GARLNW++ G+ + + K +Q+D+ A E+ ++ A + D++
Sbjct: 270 LAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMDSNQPIAAPVVGDIKSA 329
Query: 615 VQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQ 650
V L++ L + A + W LK K N+
Sbjct: 330 VSLLRKALKGAPK-----ADAEWTGALKAKVDGNKA 360
Score = 163 bits (416), Expect = 1e-42
Identities = 63/162 (38%), Positives = 94/162 (58%), Gaps = 3/162 (1%)
Query: 1 MSEDYD-EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAAC 59
MS D + E V+ ALK I+ ++G+VGIP+ LA Q +G + R+EQ A
Sbjct: 1 MSNDDNVELTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAG 60
Query: 60 YAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGG--F 117
YAA GY+ KPGVCL VS PG L+ +A+A NC+PM+++ GS ++ + +
Sbjct: 61 YAASIAGYIEGKPGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSEREIVDLQQGDY 120
Query: 118 QECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
+E Q+ +ARP+CK S R +I I + +AVR + G+PG
Sbjct: 121 EEMDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGRPG 162
Score = 111 bits (280), Expect = 2e-25
Identities = 45/83 (54%), Positives = 58/83 (69%), Gaps = 5/83 (6%)
Query: 166 NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRY 225
PR RLD+GT+G MG+G+G+ +AAA GK V+ V+GDSAFGFSGMELET+ RY
Sbjct: 414 LKPRKRLDSGTWGVMGIGMGYCVAAAA-----VTGKPVIAVEGDSAFGFSGMELETICRY 468
Query: 226 RLPVILVIVNNNGIYGGFDEATY 248
LPV ++I+NN GIY G +
Sbjct: 469 NLPVTVIIMNNGGIYKGNEADPQ 491
Score = 56.8 bits (138), Expect = 3e-08
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 15/104 (14%)
Query: 954 EVTTV----LPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMA 1009
E+ T+ LPV ++I+NN GIY G + + RY+ MM
Sbjct: 461 ELETICRYNLPVTVIIMNNGGIYKGNEADPQPG----------VISCTRLTRGRYDMMME 510
Query: 1010 VFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKP 1053
FG GY+ T ++K A+++ + + +P LIN +I+P A +
Sbjct: 511 AFGGKGYVANTPAELKAALEEAVA-SGKPCLINAMIDPDAGVES 553
Score = 34.4 bits (80), Expect = 0.20
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 639 QELKLKCQTNRQVKLPVILVIVNNNGIYGGFDETTY 674
EL +T + LPV ++I+NN GIY G +
Sbjct: 460 MEL----ETICRYNLPVTVIIMNNGGIYKGNEADPQ 491
Score = 31.7 bits (73), Expect = 1.6
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 682 EVTTV----LPVILVIVNNNGIYGGFDETTY 708
E+ T+ LPV ++I+NN GIY G +
Sbjct: 461 ELETICRYNLPVTVIIMNNGGIYKGNEADPQ 491
Score = 31.7 bits (73), Expect = 1.6
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 716 EVTTV----LPVILVIVNNNGIYGGFDETTY 742
E+ T+ LPV ++I+NN GIY G +
Sbjct: 461 ELETICRYNLPVTVIIMNNGGIYKGNEADPQ 491
Score = 31.7 bits (73), Expect = 1.6
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 750 EVTTV----LPVILVIVNNNGIYGGFDETTY 776
E+ T+ LPV ++I+NN GIY G +
Sbjct: 461 ELETICRYNLPVTVIIMNNGGIYKGNEADPQ 491
Score = 31.7 bits (73), Expect = 1.6
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 784 EVTTV----LPVILVIVNNNGIYGGFDETTY 810
E+ T+ LPV ++I+NN GIY G +
Sbjct: 461 ELETICRYNLPVTVIIMNNGGIYKGNEADPQ 491
Score = 31.7 bits (73), Expect = 1.6
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 818 EVTTV----LPVILVIVNNNGIYGGFDETTY 844
E+ T+ LPV ++I+NN GIY G +
Sbjct: 461 ELETICRYNLPVTVIIMNNGGIYKGNEADPQ 491
Score = 31.7 bits (73), Expect = 1.6
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 852 EVTTV----LPVILVIVNNNGIYGGFDETTY 878
E+ T+ LPV ++I+NN GIY G +
Sbjct: 461 ELETICRYNLPVTVIIMNNGGIYKGNEADPQ 491
Score = 31.7 bits (73), Expect = 1.6
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 886 EVTTV----LPVILVIVNNNGIYGGFDETTY 912
E+ T+ LPV ++I+NN GIY G +
Sbjct: 461 ELETICRYNLPVTVIIMNNGGIYKGNEADPQ 491
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami
diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia
coli} PDB: 2q27_A* 2q29_A*
Length = 564
Score = 271 bits (696), Expect = 4e-80
Identities = 136/386 (35%), Positives = 211/386 (54%), Gaps = 39/386 (10%)
Query: 259 MSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACY 318
MS+ + +I +ALK I+ ++G+VGIPV ++A Q EGI YIG R+EQ+A Y
Sbjct: 1 MSDQL-QMTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAEGIRYIGFRHEQSAGY 59
Query: 319 AAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGG--FQ 376
AA A G+LT+KPG+CL VS PG L+ +ANA +N +PM++I GS + + ++
Sbjct: 60 AAAASGFLTQKPGICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIVDLQQGDYE 119
Query: 377 ECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSA 436
E Q+ A+PY K + R +G + +A+R+S G+PG YLD PAN+LA +
Sbjct: 120 ELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPANVLAATM---- 175
Query: 437 LVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLI 496
E I +++ S P L P + A L+
Sbjct: 176 --------EKDEALTTIVKVENPS------------------PALL-PCPKSVTSAISLL 208
Query: 497 LEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHAL 556
+A+ PL+I+GKGAAYSQA+ +L F+ S +PFLP M KG++ D HP +AAR+ AL
Sbjct: 209 AKAERPLIILGKGAAYSQADEQLREFIESAQIPFLPMSMAKGILEDTHPLSAAAARSFAL 268
Query: 557 QNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQ 616
NAD+V+L+GARLNW+L + ++ + IQ+D+ +E+ ++ AV + D+ ++Q
Sbjct: 269 ANADVVMLVGARLNWLLA-HGKKGWAADTQFIQLDIEPQEIDSNRPIAVPVVGDIASSMQ 327
Query: 617 QLKQMLSHTQRNWSFSATSPWWQELK 642
+ L + +F+ W L
Sbjct: 328 GMLAEL----KQNTFTTPLVWRDILN 349
Score = 145 bits (369), Expect = 1e-36
Identities = 65/161 (40%), Positives = 99/161 (61%), Gaps = 3/161 (1%)
Query: 1 MSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACY 60
MS+ + +I +ALK I+ ++G+VGIPV ++A Q EGI YIG R+EQ+A Y
Sbjct: 1 MSDQL-QMTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAEGIRYIGFRHEQSAGY 59
Query: 61 AAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGG--FQ 118
AA A G+LT+KPG+CL VS PG L+ +ANA +N +PM++I GS + + ++
Sbjct: 60 AAAASGFLTQKPGICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIVDLQQGDYE 119
Query: 119 ECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
E Q+ A+PY K + R +G + +A+R+S G+PG
Sbjct: 120 ELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPG 160
Score = 105 bits (265), Expect = 1e-23
Identities = 42/73 (57%), Positives = 54/73 (73%), Gaps = 5/73 (6%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PR RLD GT+G MG+G+G+A+ A++ G VV ++GDSAFGFSGME+ET+ RY L
Sbjct: 411 PRRRLDCGTWGVMGIGMGYAIGASV-----TSGSPVVAIEGDSAFGFSGMEIETICRYNL 465
Query: 228 PVILVIVNNNGIY 240
PV +VI NN GIY
Sbjct: 466 PVTIVIFNNGGIY 478
Score = 56.0 bits (136), Expect = 4e-08
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 23/111 (20%)
Query: 954 EVTTV----LPVILVIVNNNGIYGG-----FDEATYASIVESGEVTTVSPPTSLGPSLRY 1004
E+ T+ LPV +VI NN GIY G + PT L RY
Sbjct: 456 EIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGAPS-------------PTDLLHHARY 502
Query: 1005 EKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKPQN 1055
+K+M F GY TT +++ A+ + + +P++IN++I+P+A + +
Sbjct: 503 DKLMDAFRGVGYNVTTTDELRHALTTGI-QSRKPTIINVVIDPAAGTESGH 552
Score = 31.4 bits (72), Expect = 2.1
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 639 QELKLKCQTNRQVKLPVILVIVNNNGIY 666
E+ +T + LPV +VI NN GIY
Sbjct: 455 MEI----ETICRYNLPVTIVIFNNGGIY 478
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship,
oxidation-reduct umpolung, thiamine diphosphate,
reaction intermediate; HET: TDM FAD GOL; 1.09A
{Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A*
2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Length = 603
Score = 192 bits (490), Expect = 6e-52
Identities = 90/394 (22%), Positives = 166/394 (42%), Gaps = 52/394 (13%)
Query: 259 MSEDYDEELSANQVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQA 315
M + + A + + L+ G+++++GI G +++ A++ +++ IHYI +R+E+
Sbjct: 3 MKQTKQTNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMD-ALSAERDRIHYIQVRHEEV 61
Query: 316 ACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGF 375
AA A LT K GVC +GPG H G+ +A+ + P+L + G + F
Sbjct: 62 GAMAAAADAKLTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTF 121
Query: 376 QECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQS 435
QE + + Y+ N + +++A+R + + GV+ + P +L Q+I
Sbjct: 122 QEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYAHQ-GVAVVQIPVDLPWQQI--- 177
Query: 436 ALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRL 495
P W A Q P LP P + + + ++
Sbjct: 178 ----------PAEDWYASANSYQT-------------------PLLPEPDVQAVTRLTQT 208
Query: 496 ILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV------- 548
+L A+ PL+ G GA +A EL + +P + T KG+V D +P +
Sbjct: 209 LLAAERPLIYYGIGAR--KAGKELEQLSKTLKIPLMSTYPAKGIVADRYPAYLGSANRVA 266
Query: 549 SAARTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQ 608
AL AD+VL +G + +A FK+ +Q+D++ +L + +A+
Sbjct: 267 QKPANEALAQADVVLFVGNNYPFAE-VSKA--FKNTRYFLQIDIDPAKLGKRHKTDIAVL 323
Query: 609 SDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELK 642
+D + T L +L+ S +K
Sbjct: 324 ADAQKT---LAAILAQVSERESTPWWQANLANVK 354
Score = 101 bits (255), Expect = 3e-22
Identities = 39/160 (24%), Positives = 78/160 (48%), Gaps = 4/160 (2%)
Query: 1 MSEDYDEELSANQVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQA 57
M + + A + + L+ G+++++GI G +++ A++ +++ IHYI +R+E+
Sbjct: 3 MKQTKQTNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMD-ALSAERDRIHYIQVRHEEV 61
Query: 58 ACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGF 117
AA A LT K GVC +GPG H G+ +A+ + P+L + G + F
Sbjct: 62 GAMAAAADAKLTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTF 121
Query: 118 QECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGK 157
QE + + Y+ N + +++A+R + +
Sbjct: 122 QEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYAHQ 161
Score = 65.7 bits (161), Expect = 5e-11
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 166 NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGM---ELETL 222
+ + F TMGVG+ A+AA L P ++V + GD M +L T
Sbjct: 408 TPSNRHITSNLFATMGVGIPGAIAAKLNY----PERQVFNLAGDGGAS---MTMQDLATQ 460
Query: 223 VRYRLPVILVIVNNN 237
V+Y LPVI V+ N
Sbjct: 461 VQYHLPVINVVFTNC 475
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A
{Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
PDB: 2dji_A* 1v5f_A* 1v5g_A*
Length = 590
Score = 190 bits (484), Expect = 3e-51
Identities = 67/389 (17%), Positives = 131/389 (33%), Gaps = 52/389 (13%)
Query: 264 DEELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQ 321
D +++ + + L+ G + ++GI + L AM ++ + ++ +++E+ AA
Sbjct: 1 DNKINIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAV 60
Query: 322 AIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQV 381
GV + GPG H G+ +A ++ P++ I GS Q + FQE Q
Sbjct: 61 MQSKFGGNLGVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQN 120
Query: 382 ELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTP 441
+ Y+ R + + V++A R++ + GV+ L+ P + I+ +
Sbjct: 121 PMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKR-GVAVLEVPGDFAKVEIDNDQWYSSA 179
Query: 442 KVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKA 501
L P P ++ A L+ +K
Sbjct: 180 NSLRKYAP--------------------------------IAPAAQDIDAAVELLNNSKR 207
Query: 502 PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV-------SAARTH 554
P++ G G + P + T
Sbjct: 208 PVIYAGIGTM--GHGPAVQELARKIKAPVITTGKNFETFEWDFEALTGSTYRVGWKPANE 265
Query: 555 ALQNADLVLLLGARLNWILHFGR-APRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRL 613
+ AD VL G+ F F++ IQ+D++ L A VAI D L
Sbjct: 266 TILEADTVLFAGSNFP----FSEVEGTFRNVDNFIQIDIDPAMLGKRHHADVAILGDAAL 321
Query: 614 TVQQLKQMLSHTQRNWSFSATSPWWQELK 642
+ ++L+ + + + +
Sbjct: 322 A---IDEILNKVDAVEESAWWTANLKNIA 347
Score = 101 bits (254), Expect = 3e-22
Identities = 33/154 (21%), Positives = 69/154 (44%), Gaps = 2/154 (1%)
Query: 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQ 63
D +++ + + L+ G + ++GI + L AM ++ + ++ +++E+ AA
Sbjct: 1 DNKINIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAV 60
Query: 64 AIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQV 123
GV + GPG H G+ +A ++ P++ I GS Q + FQE Q
Sbjct: 61 MQSKFGGNLGVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQN 120
Query: 124 ELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGK 157
+ Y+ R + + V++A R++ +
Sbjct: 121 PMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKR 154
Score = 69.1 bits (170), Expect = 4e-12
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 166 NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRY 225
+ F TMG+ + L A P ++V + GD AF + ++ T VRY
Sbjct: 401 TPKNMWRTSPLFATMGIAIPGGLGAKNTY----PDRQVWNIIGDGAFSMTYPDVVTNVRY 456
Query: 226 RLPVILVIVNNN 237
+PVI V+ +N
Sbjct: 457 NMPVINVVFSNT 468
Score = 32.2 bits (74), Expect = 1.0
Identities = 16/108 (14%), Positives = 33/108 (30%), Gaps = 29/108 (26%)
Query: 953 GEVTTV----LPVILVIVNNNGIYG-------GFDEATYASIVESGEVTTVSPPTSLGPS 1001
+V T +PVI V+ +N Y ++ + V
Sbjct: 448 PDVVTNVRYNMPVINVVFSN-TEYAFIKNKYEDTNKNLFG-------VDFTDVD------ 493
Query: 1002 LRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQT--TTRPSLINILINP 1047
Y K+ G G+ + + + + M + + +I+ I
Sbjct: 494 --YAKIAEAQGAKGFTVSRIEDMDRVMAEAVAANKAGHTVVIDCKITQ 539
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase,
membrane-associated flavoprotein dehydrogenase,
interactions with lipids cell membrane; HET: TDP FAD;
2.50A {Escherichia coli} PDB: 3ey9_A*
Length = 549
Score = 183 bits (466), Expect = 4e-49
Identities = 80/387 (20%), Positives = 151/387 (39%), Gaps = 58/387 (14%)
Query: 266 ELSANQVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQA 322
+ + IA+ L+ G++ ++G+ G + + ++ + I ++ R+E+ A +AA A
Sbjct: 2 KQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSD-SLN-RMGTIEWMSTRHEEVAAFAAGA 59
Query: 323 IGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVE 382
L+ + VC GPG LH G+ + N P+L I G G FQE E
Sbjct: 60 EAQLSGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQE 119
Query: 383 LARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPK 442
L R Y + I Q + A+R + + GVS + P ++ + + A +
Sbjct: 120 LFRECSHYCELVSSPEQIPQVLAIAMRKAVLNR-GVSVVVLPGDVALKPAPEGATMHWYH 178
Query: 443 VLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAP 502
+P + P EL++ ++L+ +
Sbjct: 179 APQPVVT----------------------------------PEEEELRKLAQLLRYSSNI 204
Query: 503 LVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV-------SAARTHA 555
++ G G A A EL+ F P + GK V +P V ++ H
Sbjct: 205 ALMCGSGCA--GAHKELVEFAGKIKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHT 262
Query: 556 LQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTV 615
+ NAD ++LLG + + + + KIIQ+D+N + + +A+ D++ T
Sbjct: 263 MMNADTLVLLGTQFPYRAFY--PT----DAKIIQIDINPASIGAHSKVDMALVGDIKST- 315
Query: 616 QQLKQMLSHTQRNWSFSATSPWWQELK 642
L+ +L + ++ +
Sbjct: 316 --LRALLPLVEEKADRKFLDKALEDYR 340
Score = 95.3 bits (238), Expect = 3e-20
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 5/153 (3%)
Query: 8 ELSANQVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQA 64
+ + IA+ L+ G++ ++G+ G + + ++ + I ++ R+E+ A +AA A
Sbjct: 2 KQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSD-SLN-RMGTIEWMSTRHEEVAAFAAGA 59
Query: 65 IGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVE 124
L+ + VC GPG LH G+ + N P+L I G G FQE E
Sbjct: 60 EAQLSGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQE 119
Query: 125 LARPYCKYSARPPNIHLIGQHVEKAVRLSTFGK 157
L R Y + I Q + A+R + +
Sbjct: 120 LFRECSHYCELVSSPEQIPQVLAIAMRKAVLNR 152
Score = 65.6 bits (161), Expect = 4e-11
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 166 NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRY 225
N R L + G+M + AL A P ++VV + GD F + ++V+
Sbjct: 394 NGKRRLLGSFNHGSMANAMPQALGAQATE----PERQVVAMCGDGGFSMLMGDFLSVVQM 449
Query: 226 RLPVILVIVNNN 237
+LPV +V+ NN+
Sbjct: 450 KLPVKIVVFNNS 461
Score = 31.3 bits (72), Expect = 1.8
Identities = 18/103 (17%), Positives = 40/103 (38%), Gaps = 18/103 (17%)
Query: 953 GEVTTV----LPVILVIVNNNGIYGGF--DEATYASIVESGEVTTVSPPTSLGPSLRYEK 1006
G+ +V LPV +V+ NN+ GF E + G T + + +
Sbjct: 441 GDFLSVVQMKLPVKIVVFNNS--VLGFVAMEMKAGGYLTDG--TELHDT-------NFAR 489
Query: 1007 MMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSA 1049
+ G G ++ +A+++ + P L+++++
Sbjct: 490 IAEACGITGIRVEKASEVDEALQRAF-SIDGPVLVDVVVAKEE 531
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric
dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A
{Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A*
2q5q_A*
Length = 565
Score = 174 bits (443), Expect = 3e-46
Identities = 63/383 (16%), Positives = 124/383 (32%), Gaps = 60/383 (15%)
Query: 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQA 322
+ + + +ALK +G + +FGI G + + + + + +E A +AA
Sbjct: 19 SHMKLAEALLRALKDRGAQAMFGIPGDFALPFFKVA-EETQILPLHTLSHEPAVGFAAD- 76
Query: 323 IGY--LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIG--GFQEC 378
+ GV V G G + +A A P++VI G+ G +
Sbjct: 77 -AAARYSSTLGVAAVTYGAGAFNMVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQG 135
Query: 379 ----PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQ 434
Q ++ + AR + + + + + + YL+ P N++ +
Sbjct: 136 RTLDTQFQVFKEITVAQARLDDPAKAPAEIARVLGAAR-AQSRPVYLEIPRNMVNAEV-- 192
Query: 435 SALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASR 494
EP P A +
Sbjct: 193 ----------EPVGDDPA------------------------WPVDRD-ALAACADEVLA 217
Query: 495 LILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV------ 548
+ A +P++++ E ++ +P + T MG+G++ DA +
Sbjct: 218 AMRSATSPVLMVCVEVRRYGLEAKVAELAQRLGVPVVTTFMGRGLLADAPTPPLGTYIGV 277
Query: 549 --SAARTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVA 606
A T ++ +D + LLGA L+ F + R K I A L A +
Sbjct: 278 AGDAEITRLVEESDGLFLLGAILSDTN-FAVSQRKIDLRKTIHAFDRAVTLGYHTYADIP 336
Query: 607 IQSDVRLTVQQLKQMLSHTQRNW 629
+ V +++L T+
Sbjct: 337 LAGLVDALLERLPPSDRTTRGKE 359
Score = 87.7 bits (218), Expect = 7e-18
Identities = 27/163 (16%), Positives = 57/163 (34%), Gaps = 14/163 (8%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQA 64
+ + + +ALK +G + +FGI G + + + + + +E A +AA
Sbjct: 19 SHMKLAEALLRALKDRGAQAMFGIPGDFALPFFKVA-EETQILPLHTLSHEPAVGFAAD- 76
Query: 65 IGY--LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIG--GFQEC 120
+ GV V G G + +A A P++VI G+ G +
Sbjct: 77 -AAARYSSTLGVAAVTYGAGAFNMVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQG 135
Query: 121 ----PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
Q ++ + AR + + + + + +
Sbjct: 136 RTLDTQFQVFKEITVAQARLDDPAKAPAEIARVLGAAR-AQSR 177
Score = 69.2 bits (170), Expect = 4e-12
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 167 LPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYR 226
+ + G + MG G+ + A GKR++ V GD AF +G EL R
Sbjct: 411 IDAGLMAPGYYAGMGFGVPAGIGAQCVS----GGKRILTVVGDGAFQMTGWELGNCRRLG 466
Query: 227 LPVILVIVNNNG 238
+ I+++ NN
Sbjct: 467 IDPIVILFNNAS 478
Score = 43.8 bits (104), Expect = 3e-04
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 21/95 (22%)
Query: 959 LPVILVIVNNNGIYGGFDEATYASIV----ESGEVTTVSPPTSLGPSLRYEKMMAVFGHD 1014
+ I+++ NN + ++ + R+ M A G D
Sbjct: 467 IDPIVILFNNAS-WE---------MLRTFQPESAFNDLDDW-------RFADMAAGMGGD 509
Query: 1015 GYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSA 1049
G T ++K A+ K T R LI +I
Sbjct: 510 GVRVRTRAELKAALDKAFATRGRFQLIEAMIPRGV 544
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex,
transferase; HET: MSE TPP; 2.00A {Streptomyces
clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB:
1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Length = 573
Score = 171 bits (437), Expect = 3e-45
Identities = 81/407 (19%), Positives = 141/407 (34%), Gaps = 60/407 (14%)
Query: 257 SNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAA 316
S +S + +A + L+ G+ VFG+VG + + EGI ++ R+E A
Sbjct: 2 SRVSTAPSGKPTAAHALLSRLRDHGVGKVFGVVGREAASILFD-EVEGIDFVLTRHEFTA 60
Query: 317 CYAAQAIGY--LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIG- 373
AA +T +P C GPG+ + G+A + ++ P++ + H+
Sbjct: 61 GVAAD--VLARITGRPQACWATLGPGMTNLSTGIATSVLDRSPVIALAAQSES-HDIFPN 117
Query: 374 -GFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRI 432
Q V + P KY+ H I V+ AV + G S++ P +LL
Sbjct: 118 DTHQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVDLLGSSE 177
Query: 433 NQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQA 492
VP P P P +A+ W QA
Sbjct: 178 GIDTTVPNPPANTPAKPVGVVAD--------------------------GWQK--AADQA 209
Query: 493 SRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAAR 552
+ L+ EAK P++++G A S A + + N+P + T + KGV+P H A
Sbjct: 210 AALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVGHELNYGAVT 269
Query: 553 TH------------ALQNADLVLLLGARLNWILHF-----GRAPRFKSNVKIIQVDLNAE 595
+ DLVL +G + + K +++
Sbjct: 270 GYMDGILNFPALQTMFAPVDLVLTVGYD------YAEDLRPSMWQKGIEKKTVRISPTVN 323
Query: 596 ELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELK 642
+ + V + +DV V+ + + P +
Sbjct: 324 PIPRVYRPDVDVVTDVLAFVEHFETATASFGAKQR-HDIEPLRARIA 369
Score = 83.0 bits (206), Expect = 2e-16
Identities = 37/157 (23%), Positives = 64/157 (40%), Gaps = 8/157 (5%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIG 66
+ +A + L+ G+ VFG+VG + + EGI ++ R+E A AA
Sbjct: 10 GKPTAAHALLSRLRDHGVGKVFGVVGREAASILFD-EVEGIDFVLTRHEFTAGVAAD--V 66
Query: 67 Y--LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIG--GFQECPQ 122
+T +P C GPG+ + G+A + ++ P++ + H+ Q
Sbjct: 67 LARITGRPQACWATLGPGMTNLSTGIATSVLDRSPVIALAAQSES-HDIFPNDTHQCLDS 125
Query: 123 VELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
V + P KY+ H I V+ AV + G
Sbjct: 126 VAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVG 162
Score = 65.3 bits (160), Expect = 7e-11
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
P L + + G G+ A+ A + P + + GD F + +LET+ R L
Sbjct: 426 PFGFLTSAGCSSFGYGIPAAIGAQMAR----PDQPTFLIAGDGGFHSNSSDLETIARLNL 481
Query: 228 PVILVIVNNN 237
P++ V+VNN+
Sbjct: 482 PIVTVVVNND 491
Score = 31.4 bits (72), Expect = 1.7
Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 24/97 (24%)
Query: 959 LPVILVIVNNNGIYGG--------FDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAV 1010
LP++ V+VNN+ G ++ V+ G G + +
Sbjct: 481 LPIVTVVVNND--TNGLIELYQNIGHHRSHDPAVKFG-----------GVD--FVALAEA 525
Query: 1011 FGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINP 1047
G D T ++ A++K RP LI + +N
Sbjct: 526 NGVDATRATNREELLAALRKGA-ELGRPFLIEVPVNY 561
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase,
thiamin diphosphate, lyase; HET: PGE HE3; 2.00A
{Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
PDB: 1ozg_A* 1ozf_A*
Length = 566
Score = 168 bits (429), Expect = 3e-44
Identities = 78/397 (19%), Positives = 147/397 (37%), Gaps = 57/397 (14%)
Query: 259 MSEDYD--EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAA 316
M + Y + ++ L+ QG+ VFGI G + ++ + I I +R+E A
Sbjct: 1 MDKQYPVRQWAHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANA 60
Query: 317 CYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQ 376
+ A A+G +T K GV LV SGPG + GMA A P++ +GG+ + + Q
Sbjct: 61 AFMAAAVGRITGKAGVALVTSGPGCSNLITGMATANSEGDPVVALGGAVKRADKAKQVHQ 120
Query: 377 ECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSA 436
V + P KY+ + + V A R + G+PG +++ P +
Sbjct: 121 SMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQD---------- 170
Query: 437 LVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLI 496
+++ ++ P + + Q ++LI
Sbjct: 171 --------------------------VVDGPVSGKVLPASGAPQMGAAPDDAIDQVAKLI 204
Query: 497 LEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAH-PNCV------- 548
+AK P+ ++G A+ + L + + ++P T G V +
Sbjct: 205 AQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQAAGAVNQDNFSRFAGRVGLFN 264
Query: 549 SAARTHALQNADLVLLLGARLNWILHFG-RAP--RFKSNVKIIQVDLNAEELHNSVQAAV 605
+ A LQ ADLV+ +G P N ++ +D+ + V
Sbjct: 265 NQAGDRLLQLADLVICIGYS------PVEYEPAMWNSGNATLVHIDVLPAYEERNYTPDV 318
Query: 606 AIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELK 642
+ D+ T+ +L Q + R + ++ +
Sbjct: 319 ELVGDIAGTLNKLAQNID--HRLVLSPQAAEILRDRQ 353
Score = 94.9 bits (237), Expect = 3e-20
Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 2/161 (1%)
Query: 1 MSEDYD--EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAA 58
M + Y + ++ L+ QG+ VFGI G + ++ + I I +R+E A
Sbjct: 1 MDKQYPVRQWAHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANA 60
Query: 59 CYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQ 118
+ A A+G +T K GV LV SGPG + GMA A P++ +GG+ + + Q
Sbjct: 61 AFMAAAVGRITGKAGVALVTSGPGCSNLITGMATANSEGDPVVALGGAVKRADKAKQVHQ 120
Query: 119 ECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
V + P KY+ + + V A R + G+PG
Sbjct: 121 SMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPG 161
Score = 75.3 bits (186), Expect = 4e-14
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
R + + TMGV L +A+ A L P ++VV V GD F S MELET VR +
Sbjct: 410 ARQVMISNGQQTMGVALPWAIGAWLVN----PERKVVSVSGDGGFLQSSMELETAVRLKA 465
Query: 228 PVILVIVNNN 237
V+ +I +N
Sbjct: 466 NVLHLIWVDN 475
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate,
benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas
fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A*
3iaf_A* 3d7k_A*
Length = 563
Score = 166 bits (423), Expect = 1e-43
Identities = 91/393 (23%), Positives = 163/393 (41%), Gaps = 59/393 (15%)
Query: 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIG 324
++ +++ + L G+E++FG+ G + + AC + I R+E AA +AA+ G
Sbjct: 2 AMITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAE--G 59
Query: 325 Y--LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE-CPQV 381
Y K GV LV +G G + +ANA ++ P+L + GS A + Q QV
Sbjct: 60 YARAGAKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQV 119
Query: 382 ELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTP 441
+A P K++ R I + V +A+R + G LD P ++L +I
Sbjct: 120 AMAAPITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWDILMNQI--------- 170
Query: 442 KVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKA 501
I +L ++ P A+L QA L+ +A+
Sbjct: 171 -----DEDSVIIPDLVLSA------------------HGAR-PDPADLDQALALLRKAER 206
Query: 502 PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV------SAARTHA 555
P++++G A+ + +T L +FV + +P G ++ + A
Sbjct: 207 PVIVLGSEASRTARKTALSAFVAATGVPVFADYEGLSMLSGLPDAMRGGLVQNLYSFAKA 266
Query: 556 LQNADLVLLLGARLNWILHF-----GRAPRF-KSNVKIIQVDLNAEELHNSVQAAVAIQS 609
DLVL+LGAR F + + + ++IQVD +A EL A+ I +
Sbjct: 267 DAAPDLVLMLGAR------FGLNTGHGSGQLIPHSAQVIQVDPDACELGRLQGIALGIVA 320
Query: 610 DVRLTVQQLKQMLSHTQRNWSFSATSPWWQELK 642
DV T ++ + T ++ ++ W ++
Sbjct: 321 DVGGT---IEALAQATAQDAAWPDRGDWCAKVT 350
Score = 81.8 bits (203), Expect = 5e-16
Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 5/156 (3%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIG 66
++ +++ + L G+E++FG+ G + + AC + I R+E AA +AA+ G
Sbjct: 2 AMITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAE--G 59
Query: 67 Y--LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE-CPQV 123
Y K GV LV +G G + +ANA ++ P+L + GS A + Q QV
Sbjct: 60 YARAGAKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQV 119
Query: 124 ELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
+A P K++ R I + V +A+R + G
Sbjct: 120 AMAAPITKWAHRVMATEHIPRLVMQAIRAALSAPRG 155
Score = 66.8 bits (164), Expect = 2e-11
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
P L G G+MGVG G AL A + G+R + V GD + G+S E +TLVR +L
Sbjct: 409 PGGFLCHGYLGSMGVGFGTALGAQVADLE--AGRRTILVTGDGSVGYSIGEFDTLVRKQL 466
Query: 228 PVILVIVNNN 237
P+I++I+NN
Sbjct: 467 PLIVIIMNNQ 476
Score = 35.6 bits (83), Expect = 0.096
Identities = 22/106 (20%), Positives = 34/106 (32%), Gaps = 26/106 (24%)
Query: 959 LPVILVIVNNNGIYGG---------FDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMA 1009
LP+I++I+NN G S Y + A
Sbjct: 466 LPLIVIIMNNQ--SWGATLHFQQLAVGPNRVTGTRLEN------------GS--YHGVAA 509
Query: 1010 VFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKPQN 1055
FG DGY +V A+ + L RP+ IN+ + +
Sbjct: 510 AFGADGYHVDSVESFSAALAQAL-AHNRPACINVAVALDPIPPEEL 554
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis
thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A*
1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Length = 590
Score = 166 bits (423), Expect = 2e-43
Identities = 100/396 (25%), Positives = 171/396 (43%), Gaps = 61/396 (15%)
Query: 264 DEELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQ 321
D+ ++ +AL+ QG+E VF G +E+ A+ + I + R+EQ +AA+
Sbjct: 9 DQPRKGADILVEALERQGVETVFAYPGGASMEIHQALT-RSSSIRNVLPRHEQGGVFAAE 67
Query: 322 AIGY--LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECP 379
GY + KPG+C+ SGPG + G+A+A ++ P++ I G + G FQE P
Sbjct: 68 --GYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETP 125
Query: 380 QVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVP 439
VE+ R K++ ++ I + +E+A L+T G+PG +D P ++ Q
Sbjct: 126 IVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKDIQQQLA------- 178
Query: 440 TPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLP-WPGIAELKQASRLILE 498
W L +P P + L+Q RLI E
Sbjct: 179 -------IPNWEQAMRLPGYM------------------SRMPKPPEDSHLEQIVRLISE 213
Query: 499 AKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV-------SAA 551
+K P++ +G G + EL FV +P T MG G P + +
Sbjct: 214 SKKPVLYVGGGCL--NSSDELGRFVELTGIPVASTLMGLGSYPADDELSLHMLGMHGTVY 271
Query: 552 RTHALQNADLVLLLGARLNWILHF-----GRAPRFKSNVKIIQVDLNAEELHNSVQAAVA 606
+A++++DL+L G R F G+ F S KI+ +D+++ E+ + V+
Sbjct: 272 ANYAVEHSDLLLAFGVR------FDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKTPHVS 325
Query: 607 IQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELK 642
+ DV+L +Q + ++L + W EL
Sbjct: 326 VCGDVKLALQGMNKVLENRAEELK-LDFGVWRNELN 360
Score = 84.9 bits (211), Expect = 5e-17
Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 7/158 (4%)
Query: 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQ 63
D+ ++ +AL+ QG+E VF G +E+ A+ + I + R+EQ +AA+
Sbjct: 9 DQPRKGADILVEALERQGVETVFAYPGGASMEIHQALT-RSSSIRNVLPRHEQGGVFAAE 67
Query: 64 AIGY--LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECP 121
GY + KPG+C+ SGPG + G+A+A ++ P++ I G + G FQE P
Sbjct: 68 --GYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETP 125
Query: 122 QVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
VE+ R K++ ++ I + +E+A L+T G+PG
Sbjct: 126 IVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPG 163
Score = 61.8 bits (151), Expect = 7e-10
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PR L +G G MG GL A+ A++ P VV + GD +F + EL T+ L
Sbjct: 416 PRQWLSSGGLGAMGFGLPAAIGASVAN----PDAIVVDIDGDGSFIMNVQELATIRVENL 471
Query: 228 PVILVIVNNN 237
PV ++++NN
Sbjct: 472 PVKVLLLNNQ 481
Score = 31.7 bits (73), Expect = 1.6
Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 19/100 (19%)
Query: 959 LPVILVIVNNNGIYGG--------FDEATYA-SIVESGEVTTVSPPTSLGPSLRYEKMMA 1009
LPV ++++NN + G F +A A + + P A
Sbjct: 471 LPVKVLLLNNQ--HLGMVMQWEDRFYKANRAHTFLGDPAQEDEIFP-------NMLLFAA 521
Query: 1010 VFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSA 1049
G T +++A++ L T P L++++
Sbjct: 522 ACGIPAARVTKKADLREAIQTML-DTPGPYLLDVICPHQE 560
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains;
HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Length = 589
Score = 165 bits (419), Expect = 7e-43
Identities = 72/398 (18%), Positives = 132/398 (33%), Gaps = 65/398 (16%)
Query: 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQA 322
+I +AL+ G E V G +G + A + G I E +
Sbjct: 2 AIKRGADLIVEALEEYGTEQVVGFIGHTSHFVADAFSKSHLGKRVINPATELGGAWMVNG 61
Query: 323 IGYLTKKPGVCLVVSGPG--LLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGG---FQE 377
Y+ + G LLH M A+ P + IG + G Q+
Sbjct: 62 YNYVKDRSAAVGAWHCVGNLLLHA--AMQEARTGRIPAVHIGLNSDGRL--AGRSEAAQQ 117
Query: 378 CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSAL 437
P P + + R + +G+ + +A R++ G +Y+D P +L A +I
Sbjct: 118 VPWQSF-TPIARSTQRVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFDLTADQI----- 171
Query: 438 VPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLIL 497
+A L ++++A+ ++
Sbjct: 172 ---------DDKALVPRGATRAK------------------SVLH-APNEDVREAAAQLV 203
Query: 498 EAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV-------SA 550
AK P+++ G G A S LL +P + T G GV P+ H +
Sbjct: 204 AAKNPVILAGGGVARSGGSEALLKLAEMVGVPVVTTSTGAGVFPETHALAMGSAGFCGWK 263
Query: 551 ARTHALQNADLVLLLGARLNWILHF-----GRAPRFKSNVKIIQVDLNAEELHNSVQAAV 605
+ + AD VL+LG+R + K + VD + L +
Sbjct: 264 SANDMMAAADFVLVLGSR------LSDWGIAQG-YITKMPKFVHVDTDPAVLGTFYFPLL 316
Query: 606 AIQSDVRLTVQQLKQMLSHTQ-RNWSFSATSPWWQELK 642
++ +D + ++QL ++L T +++
Sbjct: 317 SVVADAKTFMEQLIEVLPGTSGFKAVRYQERENFRQAT 354
Score = 83.0 bits (206), Expect = 2e-16
Identities = 31/160 (19%), Positives = 53/160 (33%), Gaps = 12/160 (7%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQA 64
+I +AL+ G E V G +G + A + G I E +
Sbjct: 2 AIKRGADLIVEALEEYGTEQVVGFIGHTSHFVADAFSKSHLGKRVINPATELGGAWMVNG 61
Query: 65 IGYLTKKPGVCLVVSGPG--LLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGG---FQE 119
Y+ + G LLH M A+ P + IG + G Q+
Sbjct: 62 YNYVKDRSAAVGAWHCVGNLLLHA--AMQEARTGRIPAVHIGLNSDGRL--AGRSEAAQQ 117
Query: 120 CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
P P + + R + +G+ + +A R++ G
Sbjct: 118 VPWQSF-TPIARSTQRVERLDKVGEAIHEAFRVAEGHPAG 156
Score = 65.6 bits (161), Expect = 5e-11
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PR + + G +G G AL A L P RV GD A + E V ++L
Sbjct: 414 PRRLVTSMAEGILGCGFPMALGAQLAE----PNSRVFLGTGDGALYYHFNEFRVAVEHKL 469
Query: 228 PVILVIVNNN 237
PVI ++ N
Sbjct: 470 PVITMVFTNE 479
Score = 31.7 bits (73), Expect = 1.6
Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 26/99 (26%)
Query: 959 LPVILVIVNNNGIYGG--------FDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAV 1010
LPVI ++ N G + + P + +
Sbjct: 469 LPVITMVFTNE--SYGANWTLMNHQFGQNNWT-------------EFMNPD--WVGIAKA 511
Query: 1011 FGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSA 1049
FG G I A+++ + + +P+LI I ++ +
Sbjct: 512 FGAYGESVRETGDIAGALQRAID-SGKPALIEIPVSKTQ 549
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP),
thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE;
2.70A {Escherichia coli}
Length = 616
Score = 163 bits (416), Expect = 2e-42
Identities = 79/396 (19%), Positives = 144/396 (36%), Gaps = 62/396 (15%)
Query: 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQA 322
++ A L+ +GI FG+ G + AM + GI +I R+ + A + A+
Sbjct: 25 AKMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAM-RKHGGIRHILARHVEGASHMAE- 82
Query: 323 IGY--LTK-KPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECP 379
GY T GVCL SGP + +A + P+L I G + FQ
Sbjct: 83 -GYTRATAGNIGVCLGTSGPAGTDMITALYSASADSIPILCITGQAPRARLHKEDFQAVD 141
Query: 380 QVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVP 439
+A+P K + L+ + +++A L G+PG +D P ++ I
Sbjct: 142 IEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLVDLPFDVQVAEI------- 194
Query: 440 TPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEA 499
L P ++++A ++++A
Sbjct: 195 -------EFDPDMYEPLPVYK---------------------PAASRMQIEKAVEMLIQA 226
Query: 500 KAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV--------SAA 551
+ P+++ G G + A L F ++P +PT MG G +PD H
Sbjct: 227 ERPVIVAGGGVINADAAALLQQFAELTSVPVIPTLMGWGCIPDDHELMAGMVGLQTAHRY 286
Query: 552 RTHALQNADLVLLLGARLNWILHF-----GRAPRFKSNVKIIQVDLNAEELHNSVQAAVA 606
L +D+V +G R F G ++ KI+ +D+ ++ + +
Sbjct: 287 GNATLLASDMVFGIGNR------FANRHTGSVEKYTEGRKIVHIDIEPTQIGRVLCPDLG 340
Query: 607 IQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELK 642
I SD + + L ++ Q+ W + +
Sbjct: 341 IVSDAKAALTLLVEVAQEMQKAGRLPCRKEWVADCQ 376
Score = 82.3 bits (204), Expect = 4e-16
Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 8/158 (5%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQA 64
++ A L+ +GI FG+ G + AM + GI +I R+ + A + A+
Sbjct: 25 AKMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAM-RKHGGIRHILARHVEGASHMAE- 82
Query: 65 IGY--LTK-KPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECP 121
GY T GVCL SGP + +A + P+L I G + FQ
Sbjct: 83 -GYTRATAGNIGVCLGTSGPAGTDMITALYSASADSIPILCITGQAPRARLHKEDFQAVD 141
Query: 122 QVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
+A+P K + L+ + +++A L G+PG
Sbjct: 142 IEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPG 179
Score = 66.5 bits (163), Expect = 3e-11
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
RH ++ G G +G + AL P + VV + GD F F EL ++ +
Sbjct: 432 DRHWINCGQAGPLGWTIPAALGVCAAD----PKRNVVAISGDFDFQFLIEELAVGAQFNI 487
Query: 228 PVILVIVNNN 237
P I V+VNN
Sbjct: 488 PYIHVLVNNA 497
Score = 30.3 bits (69), Expect = 3.8
Identities = 14/102 (13%), Positives = 28/102 (27%), Gaps = 21/102 (20%)
Query: 959 LPVILVIVNNN----------GIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMM 1008
+P I V+VNN + + S EV + K+
Sbjct: 487 IPYIHVLVNNAYLGLIRQSQRAFDMDYCVQLAFENINSSEVNGYGVD--------HVKVA 538
Query: 1009 AVFGHDGYLCTTVPQIKQAMKKCLQTTTR---PSLINILINP 1047
G I A ++ + P ++ +++
Sbjct: 539 EGLGCKAIRVFKPEDIAPAFEQAKALMAQYRVPVVVEVILER 580
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A
{Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5
c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Length = 677
Score = 150 bits (381), Expect = 1e-37
Identities = 86/398 (21%), Positives = 162/398 (40%), Gaps = 55/398 (13%)
Query: 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQA 322
L+ Q+ + + Q ++ VFG G ++ + A+ + +++ ++EQ A + A+
Sbjct: 80 VGLTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIH-NSDKFNFVLPKHEQGAGHMAE- 137
Query: 323 IGY--LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQ 380
GY + KPGV LV SGPG + MA+A + PM+V G G FQE
Sbjct: 138 -GYARASGKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADV 196
Query: 381 VELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPT 440
V ++R K++ ++ + + +A ++T G+PG +D P ++ A +
Sbjct: 197 VGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDLPKDVTAAIL-------- 248
Query: 441 PKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAK 500
P P L + L ++A + + +A+ LI AK
Sbjct: 249 ------RNPIPTKTTLPSNALNQLTSRAQDE------------FVMQSINKAADLINLAK 290
Query: 501 APLVIIGKGA-AYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV-------SAAR 552
P++ +G G ++ L + +P T G G P + A
Sbjct: 291 KPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKSLDMLGMHGCATA 350
Query: 553 THALQNADLVLLLGARL-----NWILHFG---RAPRFKSNVKIIQVDLNAEELHNSVQAA 604
A+QNADL++ +GAR I F R + II +++ + ++ VQ
Sbjct: 351 NLAVQNADLIIAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQ 410
Query: 605 VAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELK 642
+A++ D + ++ + + S W+ ++
Sbjct: 411 IAVEGDATTNLGKMMSKIFPVK------ERSEWFAQIN 442
Score = 81.2 bits (201), Expect = 8e-16
Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 7/157 (4%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQA 64
L+ Q+ + + Q ++ VFG G ++ + A+ + +++ ++EQ A + A+
Sbjct: 80 VGLTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIH-NSDKFNFVLPKHEQGAGHMAE- 137
Query: 65 IGY--LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQ 122
GY + KPGV LV SGPG + MA+A + PM+V G G FQE
Sbjct: 138 -GYARASGKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADV 196
Query: 123 VELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
V ++R K++ ++ + + +A ++T G+PG
Sbjct: 197 VGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPG 233
Score = 63.8 bits (156), Expect = 2e-10
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
P + +G GTMG GL A+ A + P V+ + GD++F + EL + V+
Sbjct: 503 PHTFITSGGLGTMGYGLPAAIGAQVAK----PESLVIDIDGDASFNMTLTELSSAVQAGT 558
Query: 228 PVILVIVNNN 237
PV ++I+NN
Sbjct: 559 PVKILILNNE 568
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon,
mandelate catabolism, T thiazolone diphosphate,
inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas
putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A*
1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A*
2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Length = 528
Score = 148 bits (375), Expect = 1e-37
Identities = 68/392 (17%), Positives = 128/392 (32%), Gaps = 64/392 (16%)
Query: 267 LSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQAIG 324
S + + L+ QGI+ VFG G + E YI E A G
Sbjct: 2 ASVHGTTYELLRRQGIDTVFGNPGSNALPFLKDF---PEDFRYILALQEACVVGIAD--G 56
Query: 325 Y--LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGF-QECPQV 381
Y ++KP + S G + G ++NA + P++V G + G+
Sbjct: 57 YAQASRKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAA 116
Query: 382 ELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTP 441
L RP K+S P + + + +A+ +++ G YL P + + + +
Sbjct: 117 NLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDAD----PQSH 172
Query: 442 KVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKA 501
+ + + ++ +L + + A
Sbjct: 173 HLFDRH-----------------------------VSSSVR-LNDQDLDILVKALNSASN 202
Query: 502 PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTP-MGKGVVPDAHPNCV------SAARTH 554
P +++G + A + + P P + P HP AA +
Sbjct: 203 PAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCPFPTRHPCFRGLMPAGIAAISQ 262
Query: 555 ALQNADLVLLLGARLNWILHFGR------APRFKSNVKIIQVDLNAEELHNSVQAAVAIQ 608
L+ D+VL++GA R K ++I V + E + AI
Sbjct: 263 LLEGHDVVLVIGAP------VFRYHQYDPGQYLKPGTRLISVTCDPLEAARAPM-GDAIV 315
Query: 609 SDVRLTVQQLKQMLSHTQRNWSFSATSPWWQE 640
+D+ L ++ + R +A P +
Sbjct: 316 ADIGAMASALANLVEESSRQLPTAAPEPAKVD 347
Score = 79.5 bits (197), Expect = 2e-15
Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 10/156 (6%)
Query: 9 LSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQAIG 66
S + + L+ QGI+ VFG G + E YI E A G
Sbjct: 2 ASVHGTTYELLRRQGIDTVFGNPGSNALPFLKDF---PEDFRYILALQEACVVGIAD--G 56
Query: 67 Y--LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGF-QECPQV 123
Y ++KP + S G + G ++NA + P++V G + G+
Sbjct: 57 YAQASRKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAA 116
Query: 124 ELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
L RP K+S P + + + +A+ +++ G
Sbjct: 117 NLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQG 152
Score = 62.9 bits (154), Expect = 3e-10
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
P G +G L A+ L P ++V+ V GD + +S L T +Y +
Sbjct: 392 PGSYYFCAA-GGLGFALPAAIGVQLAE----PERQVIAVIGDGSANYSISALWTAAQYNI 446
Query: 228 PVILVIVNNN 237
P I VI+NN
Sbjct: 447 PTIFVIMNNG 456
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein,
THDP-dependent enzymes, thiamine pyrophosphate, lyase;
HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Length = 570
Score = 140 bits (356), Expect = 6e-35
Identities = 69/416 (16%), Positives = 134/416 (32%), Gaps = 73/416 (17%)
Query: 245 EATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQ 302
++ + + S+M+ + + L GIE +FG+ G ++ + +
Sbjct: 7 HHHHSSGLVPRGSHMAS----MYTVGDYLLDRLHELGIEEIFGVPGDYNLQFLDQI-ISR 61
Query: 303 EGIHYIGMRNEQAACYAAQAIGYL-TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVI 361
E + +IG NE A Y A GY TKK L G G L G+A + P++ I
Sbjct: 62 EDMKWIGNANELNASYMAD--GYARTKKAAAFLTTFGVGELSAINGLAGSYAENLPVVEI 119
Query: 362 GGSCAQDHEGIGGFQEC--------PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTF 413
GS + G F +++ P + + +L
Sbjct: 120 VGSPTSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLTAENATYEIDRVLSQLLKE 179
Query: 414 GKPGVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVII 473
KP Y++ P ++ +A P + +
Sbjct: 180 RKPV--YINLPVDV------AAAKAEKPALSLEKESSTTNTTEQVI-------------- 217
Query: 474 GKVLEPTLPWPGIAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPT 533
L + + A+ P+VI G E + FV+ LP
Sbjct: 218 ---------------LSKIEESLKNAQKPVVIAGHEVISFGLEKTVTQFVSETKLPITTL 262
Query: 534 PMGKGVVPDAHPNCV--------SAARTHALQNADLVLLLGARLN-WILHFGRAPRFKSN 584
GK V ++ P+ + + + +++AD +L+LG +L G
Sbjct: 263 NFGKSAVDESLPSFLGIYNGKLSEISLKNFVESADFILMLGVKLTDSST--GAFTHHLDE 320
Query: 585 VKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQE 640
K+I ++++ + N V ++ + + + ++E
Sbjct: 321 NKMISLNIDEGIIFNKVVEDFDFRAV-------VSSLSELKGIEYEGQYIDKQYEE 369
Score = 71.8 bits (177), Expect = 5e-13
Identities = 34/147 (23%), Positives = 52/147 (35%), Gaps = 16/147 (10%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQA 64
+ + L GIE +FG+ G ++ + +E + +IG NE A Y A
Sbjct: 23 SMYTVGDYLLDRLHELGIEEIFGVPGDYNLQFLDQI-ISREDMKWIGNANELNASYMAD- 80
Query: 65 IGYL-TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQEC--- 120
GY TKK L G G L G+A + P++ I GS + G F
Sbjct: 81 -GYARTKKAAAFLTTFGVGELSAINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLA 139
Query: 121 -----PQVELARPYCKYSA--RPPNIH 140
+++ P N
Sbjct: 140 DGDFKHFMKMHEPVTAARTLLTAENAT 166
Score = 65.7 bits (161), Expect = 5e-11
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 175 GTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIV 234
+G++G AL + + R + GD + + EL +R +L I I+
Sbjct: 422 PLWGSIGYTFPAALGSQIA----DKESRHLLFIGDGSLQLTVQELGLSIREKLNPICFII 477
Query: 235 NNNGIYG 241
NN+G Y
Sbjct: 478 NNDG-YT 483
Score = 43.3 bits (103), Expect = 4e-04
Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 29/100 (29%)
Query: 959 LPVILVIVNNNG------IYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFG 1012
L I I+NN+G I+G +Y + Y K+ FG
Sbjct: 470 LNPICFIINNDGYTVEREIHGP--TQSY---------NDIPMW-------NYSKLPETFG 511
Query: 1013 HDGYLC-----TTVPQIKQAMKKCLQTTTRPSLINILINP 1047
T + MK+ R I +++
Sbjct: 512 ATEDRVVSKIVRTENEFVSVMKEAQADVNRMYWIELVLEK 551
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv
flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A
{Acetobacter pasteurianus}
Length = 566
Score = 140 bits (355), Expect = 7e-35
Identities = 48/380 (12%), Positives = 120/380 (31%), Gaps = 61/380 (16%)
Query: 271 QVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY-- 325
+A+ L G+++ F + G + +++ + + + I NE ++A+ GY
Sbjct: 7 MYLAERLVQIGLKHHFAVAGDYNLVLLDQLLL--NKDMKQIYCCNELNCGFSAE--GYAR 62
Query: 326 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE-------- 377
+V G + + A P+++I G+ + +G G
Sbjct: 63 SNGA-AAAVVTFSVGAISAMNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDY 121
Query: 378 CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSAL 437
Q+E+AR + + H ++ +R + + YLD N+ ++
Sbjct: 122 SYQLEMARQVTCAAESITDAHSAPAKIDHVIRTALRERKPA-YLDIACNIASEPCV---- 176
Query: 438 VPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLIL 497
P P + P LK A + L+
Sbjct: 177 RPGPVSSLLSEPEIDHTSLKAA-----------------------------VDATVALLE 207
Query: 498 EAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV--------S 549
++ +P++++G + A + + KG P+ H +
Sbjct: 208 KSASPVMLLGSKLRAANALAATETLADKLQCAVTIMAAAKGFFPEDHAGFRGLYWGEVSN 267
Query: 550 AARTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQS 609
++ +D +L + N + +I + + + +++
Sbjct: 268 PGVQELVETSDALLCIAPVFNDY-STVGWSAWPKGPNVILAEPDRVTVDGRAYDGFTLRA 326
Query: 610 DVRLTVQQLKQMLSHTQRNW 629
++ ++ + Q++
Sbjct: 327 FLQALAEKAPARPASAQKSS 346
Score = 63.3 bits (155), Expect = 3e-10
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 167 LPRHR--LDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVR 224
LPR +G +G + A A+ + ++ V + GD +F + E+ +VR
Sbjct: 396 LPRGARVELEMQWGHIGWSVPSAFGNAMG----SQDRQHVVMVGDGSFQLTAQEVAQMVR 451
Query: 225 YRLPVILVIVNNNGIYG 241
Y LPVI+ ++NN G Y
Sbjct: 452 YELPVIIFLINNRG-YV 467
Score = 62.9 bits (154), Expect = 4e-10
Identities = 25/159 (15%), Positives = 59/159 (37%), Gaps = 18/159 (11%)
Query: 13 QVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY-- 67
+A+ L G+++ F + G + +++ + + + I NE ++A+ GY
Sbjct: 7 MYLAERLVQIGLKHHFAVAGDYNLVLLDQLLL--NKDMKQIYCCNELNCGFSAE--GYAR 62
Query: 68 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE-------- 119
+V G + + A P+++I G+ + +G G
Sbjct: 63 SNGA-AAAVVTFSVGAISAMNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDY 121
Query: 120 CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKP 158
Q+E+AR + + H ++ +R + +
Sbjct: 122 SYQLEMARQVTCAAESITDAHSAPAKIDHVIRTALRERK 160
Score = 38.3 bits (90), Expect = 0.015
Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 31/100 (31%)
Query: 959 LPVILVIVNNNG------IYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFG 1012
LPVI+ ++NN G I+ G Y I + Y +M VF
Sbjct: 454 LPVIIFLINNRGYVIEIAIHDGP----YNYI----------------KNWDYAGLMEVFN 493
Query: 1013 HD-----GYLCTTVPQIKQAMKKCLQTTTRPSLINILINP 1047
G TT ++ +A+ + T P+LI I+
Sbjct: 494 AGEGHGLGLKATTPKELTEAIARAKANTRGPTLIECQIDR 533
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase,
flavoprotein, metal-binding, alcohol fermentation; HET:
TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A
3oe1_A* 1zpd_A*
Length = 568
Score = 135 bits (342), Expect = 3e-33
Identities = 49/393 (12%), Positives = 120/393 (30%), Gaps = 71/393 (18%)
Query: 271 QVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY-- 325
+A+ L G+++ F + G + +++ + + + + NE ++A+ GY
Sbjct: 7 TYLAERLVQIGLKHHFAVAGDYNLVLLDNLLL--NKNMEQVYCCNELNCGFSAE--GYAR 62
Query: 326 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGG---SCAQDHEGIG--GFQEC-- 378
+V G L F + A P+++I G + + +
Sbjct: 63 AKGA-AAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDY 121
Query: 379 -PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSAL 437
Q+E+A+ + ++ ++ + K V YL+ N+ +
Sbjct: 122 HYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPV-YLEIACNIASMPCA---- 176
Query: 438 VPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLIL 497
P P A L A +++ + I
Sbjct: 177 APGPASALFNDEASDEASLNAA-----------------------------VEETLKFIA 207
Query: 498 EAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV--------S 549
V++G + AE + F ++ K P+ +P+ +
Sbjct: 208 NRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVATMAAAKSFFPEENPHYIGTSWGEVSY 267
Query: 550 AARTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQS 609
++ AD V+ L N K++ + + ++ +V ++
Sbjct: 268 PGVEKTMKEADAVIALAPVFNDY-STTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHLKD 326
Query: 610 DVRLTVQQLKQMLSHTQRNWSFSATSPWWQELK 642
+ Q++ + + +++ L
Sbjct: 327 YLTRLAQKVSK----------KTGALDFFKSLN 349
Score = 63.3 bits (155), Expect = 3e-10
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 167 LPRHR--LDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVR 224
LP +G +G + A A+ AP +R + + GD +F + E+ +VR
Sbjct: 400 LPNGARVEYEMQWGHIGWSVPAAFGYAVG----APERRNILMVGDGSFQLTAQEVAQMVR 455
Query: 225 YRLPVILVIVNNNGIYG 241
+LPVI+ ++NN G Y
Sbjct: 456 LKLPVIIFLINNYG-YT 471
Score = 61.0 bits (149), Expect = 1e-09
Identities = 22/159 (13%), Positives = 56/159 (35%), Gaps = 18/159 (11%)
Query: 13 QVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY-- 67
+A+ L G+++ F + G + +++ + + + + NE ++A+ GY
Sbjct: 7 TYLAERLVQIGLKHHFAVAGDYNLVLLDNLLL--NKNMEQVYCCNELNCGFSAE--GYAR 62
Query: 68 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGG---SCAQDHEGIG--GFQEC-- 120
+V G L F + A P+++I G + + +
Sbjct: 63 AKGA-AAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDY 121
Query: 121 -PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKP 158
Q+E+A+ + ++ ++ + K
Sbjct: 122 HYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKK 160
Score = 38.3 bits (90), Expect = 0.012
Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 21/97 (21%)
Query: 959 LPVILVIVNNNG------IYGGFDEATYASIVESGEVTTVSPP--TSLGPSLRYEKMMAV 1010
LPVI+ ++NN G I+ G Y +I L
Sbjct: 458 LPVIIFLINNYGYTIEVMIHDGP----YNNI---------KNWDYAGLMEVFNGNGGYDS 504
Query: 1011 FGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINP 1047
G T ++ +A+K L T P+LI I
Sbjct: 505 GAGKGLKAKTGGELAEAIKVALANTDGPTLIECFIGR 541
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites,
phenylalanine catabolism, tryptophan catabolism,
thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces
cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A*
2vk4_A* 2vjy_A* 2g1i_A*
Length = 563
Score = 135 bits (342), Expect = 3e-33
Identities = 67/410 (16%), Positives = 140/410 (34%), Gaps = 67/410 (16%)
Query: 265 EELSANQVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQ 321
E++ + + + LK + VFG+ G + +++ EG+ + G NE A YAA
Sbjct: 2 SEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYE--VEGMRWAGNANELNAAYAAD 59
Query: 322 AIGY--LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE-- 377
GY + + G G L G+A + +L + G + +
Sbjct: 60 --GYARIKGM-SCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHT 116
Query: 378 ------CPQVELARPYCKYSARPPNIHLIGQHVEKAVRL-STFGKPGVSYLDFPANLLAQ 430
++ + +A +I +++ +R +P YL PANL+
Sbjct: 117 LGNGDFTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPV--YLGLPANLVDL 174
Query: 431 RINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELK 490
+ L ++ +L K+ +
Sbjct: 175 NVPAKLL---QTPIDMSLKPNDAESEKEV-----------------------------ID 202
Query: 491 QASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV-- 548
L +AK P+++ + + E ++ P TPMGKG + + HP
Sbjct: 203 TILVLDKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPMGKGSIDEQHPRYGGV 262
Query: 549 ------SAARTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQ 602
A+++ADL+L +GA L+ + +K I++ + ++ N+
Sbjct: 263 YVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSYSYK-TKNIVEFHSDHMKIRNATF 321
Query: 603 AAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVK 652
V ++ ++ +L ++ + + P + +K
Sbjct: 322 PGVQMKFVLQ----KLLTTIADAAKGYK-PVAVPARTPANAAVPASTPLK 366
Score = 69.1 bits (170), Expect = 4e-12
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 167 LPRHR--LDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVR 224
P + + +G++G G L AA P KRV+ GD + + E+ T++R
Sbjct: 400 FPNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIR 459
Query: 225 YRLPVILVIVNNNG------IYGG 242
+ L L ++NN+G I+G
Sbjct: 460 WGLKPYLFVLNNDGYTIQKLIHGP 483
Score = 59.9 bits (146), Expect = 3e-09
Identities = 29/167 (17%), Positives = 60/167 (35%), Gaps = 19/167 (11%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQ 63
E++ + + + LK + VFG+ G + +++ EG+ + G NE A YAA
Sbjct: 2 SEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYE--VEGMRWAGNANELNAAYAAD 59
Query: 64 AIGY--LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE-- 119
GY + + G G L G+A + +L + G + +
Sbjct: 60 --GYARIKGM-SCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHT 116
Query: 120 ------CPQVELARPYCKYSARPPNIHLIGQHVEKAVRL-STFGKPG 159
++ + +A +I +++ +R +P
Sbjct: 117 LGNGDFTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPV 163
Score = 38.3 bits (90), Expect = 0.012
Identities = 15/99 (15%), Positives = 33/99 (33%), Gaps = 28/99 (28%)
Query: 959 LPVILVIVNNNG------IYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFG 1012
L L ++NN+G I+G +A Y + + ++ FG
Sbjct: 462 LKPYLFVLNNDGYTIQKLIHGP--KAQY---------NEIQGW-------DHLSLLPTFG 503
Query: 1013 HDGYLC---TTVPQIKQAMK-KCLQTTTRPSLINILINP 1047
Y T + + + K ++ +I +++
Sbjct: 504 AKDYETHRVATTGEWDKLTQDKSFNDNSKIRMIEVMLPV 542
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate,
indole-3-acetic acid, TDP dependent enzyme, lyase; HET:
TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3
c.36.1.5 c.36.1.9
Length = 552
Score = 131 bits (331), Expect = 6e-32
Identities = 69/393 (17%), Positives = 117/393 (29%), Gaps = 70/393 (17%)
Query: 271 QVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY-L 326
+ L G +++FG+ G + L I ++G NE A YAA GY
Sbjct: 9 DYLLDRLTDCGADHLFGVPGDYNLQF--LDHVIDSPDICWVGCANELNASYAAD--GYAR 64
Query: 327 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGG---SCAQDHE-------GIGGFQ 376
K L G G L G+A + P+L I G + AQ G G F+
Sbjct: 65 CKGFAALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFR 124
Query: 377 ECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSA 436
++ P A + + + +PG YL PA++ +
Sbjct: 125 H--FYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRERRPG--YLMLPADVAKKAAT--- 177
Query: 437 LVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLI 496
P L A LK A +
Sbjct: 178 --PPVNALTHKQAHADSACLKAF-----------------------------RDAAENKL 206
Query: 497 LEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV-------- 548
+K ++ + L +V + MGKG+ +
Sbjct: 207 AMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHATMLMGKGIFDERQAGFYGTYSGSAS 266
Query: 549 SAARTHALQNADLVLLLGARLN-WILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 607
+ A A++ AD VL +G R + + + I+V +A + + + +
Sbjct: 267 TGAVKEAIEGADTVLCVGTRFTDTLT--AGFTHQLTPAQTIEVQPHAARVGDVWFTGIPM 324
Query: 608 QSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQE 640
+ V+ KQ H S++
Sbjct: 325 NQAIETLVELCKQ---HVHAGLMSSSSGAIPFP 354
Score = 63.3 bits (155), Expect = 2e-10
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 167 LPRHR--LDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVR 224
LP + +G++G L A A C P +RV+ + GD A + EL +++R
Sbjct: 395 LPADVNFIVQPLWGSIGYTLAAAFGAQTAC----PNRRVIVLTGDGAAQLTIQELGSMLR 450
Query: 225 YRLPVILVIVNNNGIYG 241
+ I++++NN G Y
Sbjct: 451 DKQHPIILVLNNEG-YT 466
Score = 62.2 bits (152), Expect = 6e-10
Identities = 36/161 (22%), Positives = 55/161 (34%), Gaps = 20/161 (12%)
Query: 13 QVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY-L 68
+ L G +++FG+ G + L I ++G NE A YAA GY
Sbjct: 9 DYLLDRLTDCGADHLFGVPGDYNLQF--LDHVIDSPDICWVGCANELNASYAAD--GYAR 64
Query: 69 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGG---SCAQDHE-------GIGGFQ 118
K L G G L G+A + P+L I G + AQ G G F+
Sbjct: 65 CKGFAALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFR 124
Query: 119 ECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
++ P A + + + +PG
Sbjct: 125 H--FYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRERRPG 163
Score = 35.2 bits (82), Expect = 0.11
Identities = 16/99 (16%), Positives = 33/99 (33%), Gaps = 29/99 (29%)
Query: 959 LPVILVIVNNNG------IYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFG 1012
I++++NN G I+G E Y I + + +
Sbjct: 453 QHPIILVLNNEGYTVERAIHGA--EQRYNDI---------ALW-------NWTHIPQALS 494
Query: 1013 HD----GYLCTTVPQIKQAMKKCLQTTTRPSLINILINP 1047
D + + Q+ ++K + R SLI +++
Sbjct: 495 LDPQSECWRVSEAEQLADVLEK-VAHHERLSLIEVMLPK 532
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate
synthase; transferase, metal-binding; HET: TPP; 2.35A
{Bacillus subtilis}
Length = 604
Score = 124 bits (313), Expect = 1e-29
Identities = 55/397 (13%), Positives = 128/397 (32%), Gaps = 51/397 (12%)
Query: 271 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTKK 329
GI G LA+ C I +E++A + A + ++
Sbjct: 35 GSFIDEFALSGITDAVVCPGSRSTPLAVLCAAHPDISVHVQIDERSAGFFALGLAKAKQR 94
Query: 330 PGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCK 389
P + + SG + + + A + P++V+ + +G Q Q L + K
Sbjct: 95 PVLLICTSGTAAANFYPAVVEAHYSRVPIIVLTADRPHELREVGAPQAINQHFLFGNFVK 154
Query: 390 YSA-------RPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPK 442
+ P + I +A + G +++ VP +
Sbjct: 155 FFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVN---------------VPLRE 199
Query: 443 VLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAP 502
L P L ++ ++ L + ++ EA+
Sbjct: 200 PLMPDLSDEPFGRMRTGRH-------------VSVKTGTQSVDRESLSDVAEMLAEAEKG 246
Query: 503 LVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLV 562
+++ G+ + + E +++ + P L P+ + V A L++ +L
Sbjct: 247 MIVCGELHSDADKE-NIIALSKALQYPILADPLSNLRNGVHDKSTVIDAYDSFLKDDELK 305
Query: 563 LLLGARLNWILHFGRAP---------RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRL 613
L + ++ FG P + ++ I +D + + +A I + +
Sbjct: 306 RKLRP--DVVIRFGPMPVSKPVFLWLKDDPTIQQIVIDEDGGWRDPTQASAHMIHCNASV 363
Query: 614 TVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQ 650
+++ L+ R+ + WQ + + + + Q
Sbjct: 364 FAEEIMAGLTAATRSSEWLE---KWQFVNGRFREHLQ 397
Score = 88.8 bits (220), Expect = 3e-18
Identities = 25/155 (16%), Positives = 49/155 (31%), Gaps = 8/155 (5%)
Query: 13 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTKK 71
GI G LA+ C I +E++A + A + ++
Sbjct: 35 GSFIDEFALSGITDAVVCPGSRSTPLAVLCAAHPDISVHVQIDERSAGFFALGLAKAKQR 94
Query: 72 PGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCK 131
P + + SG + + + A + P++V+ + +G Q Q L + K
Sbjct: 95 PVLLICTSGTAAANFYPAVVEAHYSRVPIIVLTADRPHELREVGAPQAINQHFLFGNFVK 154
Query: 132 YSA-------RPPNIHLIGQHVEKAVRLSTFGKPG 159
+ P + I +A + G
Sbjct: 155 FFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMG 189
Score = 61.0 bits (148), Expect = 2e-09
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
Query: 176 TFGTMGV-GLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIV 234
+ G G+ +++A+ V V GD +F L + +P+ +++V
Sbjct: 448 IYSNRGANGIDGVVSSAMGV-CEGTKAPVTLVIGDLSFYHDLNGLLAAKKLGIPLTVILV 506
Query: 235 NNNGIYGGFDEATYAWLDIIKKSNMSEDY 263
NN+G G F +L + ED
Sbjct: 507 NNDG-GGIFS-----FLPQASEKTHFEDL 529
Score = 36.4 bits (84), Expect = 0.053
Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 11/96 (11%)
Query: 959 LPVILVIVNNNGIYGGFDEATYASIVESGE--VTTVSPPTSLGPSLRYEKMMAVFGHDGY 1016
+P+ +++VNN+G G F AS E T + ++ A++G
Sbjct: 499 IPLTVILVNNDG-GGIFSFLPQASEKTHFEDLFGTPTGLD-------FKHAAALYGGTYS 550
Query: 1017 LCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052
+ + K A LI I + + +
Sbjct: 551 CPASWDEFKTAYAPQAD-KPGLHLIEIKTDRQSRVQ 585
Score = 31.4 bits (71), Expect = 2.1
Identities = 7/24 (29%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 647 TNRQVKLPVILVIVNNNGIYGGFD 670
+++ +P+ +++VNN+G G F
Sbjct: 493 AAKKLGIPLTVILVNNDG-GGIFS 515
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate
synthase; menaquinone biosynthesis, sephchc synthase,
structural genomics; 2.60A {Listeria monocytogenes}
Length = 578
Score = 121 bits (306), Expect = 9e-29
Identities = 60/410 (14%), Positives = 124/410 (30%), Gaps = 68/410 (16%)
Query: 271 QVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYL 326
+ L G++ G P LA+ + + +E++A + A +
Sbjct: 15 AAFIEELVQAGVKEAIISPGSRSTP---LALMMAEHPILKIYVDVDERSAGFFALGLAKA 71
Query: 327 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHE--GIGGFQECPQVELA 384
+K+P V L SG + F +A A ++ P++V+ + + HE +G Q Q+ L
Sbjct: 72 SKRPVVLLCTSGTAAANYFPAVAEANLSQIPLIVL--TADRPHELRNVGAPQAMDQLHLY 129
Query: 385 RPYCKYSA-------RPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANL-LAQRINQSA 436
+ K + H +AV ++ G +L+FP L + S
Sbjct: 130 GSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPLREPLVPILEPSP 189
Query: 437 LVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLI 496
T K + L I ++
Sbjct: 190 FTATGKKHHHVHIYYT-------------------------HEVLDDSSIQKM----VTE 220
Query: 497 LEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPM-GKGVVPDAHPNCVSAARTH- 554
K + ++G + E ++ P L P+ G +
Sbjct: 221 CTGKKGVFVVG-PIDKKELEQPMVDLAKKLGWPILADPLSGLRSYGALDEVVIDQYDAFL 279
Query: 555 ------ALQNADLVLLLGARL--NWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVA 606
++V+ G+ + ++ S+++ VD A
Sbjct: 280 KEAEIIDKLTPEVVIRFGSMPVSKPLKNW---LEQLSDIRFYVVDPGAAWKDPIKAVTDM 336
Query: 607 IQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVI 656
I D R + ++Q + ++ + W + R++ L +
Sbjct: 337 IHCDERFLLDIMQQNMPDDAKD------AAWLNGWTSYNKVAREIVLAEM 380
Score = 86.4 bits (214), Expect = 1e-17
Identities = 31/160 (19%), Positives = 60/160 (37%), Gaps = 18/160 (11%)
Query: 13 QVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYL 68
+ L G++ G P LA+ + + +E++A + A +
Sbjct: 15 AAFIEELVQAGVKEAIISPGSRSTP---LALMMAEHPILKIYVDVDERSAGFFALGLAKA 71
Query: 69 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHE--GIGGFQECPQVELA 126
+K+P V L SG + F +A A ++ P++V+ + + HE +G Q Q+ L
Sbjct: 72 SKRPVVLLCTSGTAAANYFPAVAEANLSQIPLIVL--TADRPHELRNVGAPQAMDQLHLY 129
Query: 127 RPYCKYSA-------RPPNIHLIGQHVEKAVRLSTFGKPG 159
+ K + H +AV ++ G
Sbjct: 130 GSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRG 169
Score = 55.6 bits (134), Expect = 7e-08
Identities = 24/131 (18%), Positives = 43/131 (32%), Gaps = 24/131 (18%)
Query: 136 PPNIHL---IGQHVEKAVRLSTFGKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAAL 192
P L + + +L N G G + + AL A++
Sbjct: 400 PDKAGLFIGNSMPIRDVDTYFSQIDKKIKMLAN--------RGANG-IDGVVSSALGASV 450
Query: 193 YCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLD 252
+ + + GD +F L +Y++ + +VIVNN+G G F +L
Sbjct: 451 ------VFQPMFLLIGDLSFYHDMNGLLMAKKYKMNLTIVIVNNDG-GGIFS-----FLP 498
Query: 253 IIKKSNMSEDY 263
+ E
Sbjct: 499 QANEPKYFESL 509
Score = 33.6 bits (77), Expect = 0.43
Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 19/100 (19%)
Query: 959 LPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPP------TSLGPSLRYEKMMAVFG 1012
+ + +VIVNN+G GG I TS + A +
Sbjct: 479 MNLTIVIVNNDG--GG--------IFSFLPQANEPKYFESLFGTSTELD--FRFAAAFYD 526
Query: 1013 HDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052
D + +V ++++A+ K +I + N ++
Sbjct: 527 ADYHEAKSVDELEEAIDKASY-HKGLDIIEVKTNRHENKA 565
Score = 30.1 bits (68), Expect = 4.2
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 647 TNRQVKLPVILVIVNNNGIYGGFD 670
++ K+ + +VIVNN+G G F
Sbjct: 473 MAKKYKMNLTIVIVNNDG-GGIFS 495
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate
synthase; menaquinone, THDP, Mg, vitamin K2,
carboxylase, magnesium; HET: AKG; 1.95A {Escherichia
coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Length = 556
Score = 108 bits (271), Expect = 2e-24
Identities = 57/404 (14%), Positives = 124/404 (30%), Gaps = 58/404 (14%)
Query: 259 MSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAAC 317
MS A VI +AL G+ ++ G L +A + + +E+
Sbjct: 1 MSVSAFNRRWA-AVILEALTRHGVRHICIAPGSRSTLLTLAAAENSAFIHHTHFDERGLG 59
Query: 318 YAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHE--GIGGF 375
+ A + ++K+P +V SG + + + + A + ++++ + + E G
Sbjct: 60 HLALGLAKVSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLILL--TADRPPELIDCGAN 117
Query: 376 QECPQVELARPYCKYSA---RPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRI 432
Q Q + + +S RP V G +++
Sbjct: 118 QAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLHAGGVHIN---------- 167
Query: 433 NQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAEL--K 490
P + L + G+ + +G + PW A
Sbjct: 168 -----CPFAEPLYGEMDDTGL--------------SWQQRLGDWWQDDKPWLREAPRLES 208
Query: 491 QASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMG--KGVVPDAHPNCV 548
+ R + ++ G ++ ++ + + P + + +P A
Sbjct: 209 EKQRDWFFWRQKRGVVVAGRMSAEEGKKVALWAQTLGWPLIGDVLSQTGQPLPCADLWLG 268
Query: 549 SAARTHALQNADLVLLLGARL--NWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVA 606
+A T LQ A +V+ LG+ L +L + + VD L +
Sbjct: 269 NAKATSELQQAQIVVQLGSSLTGKRLLQW---QASCEPEEYWIVDDIEGRLDPAHHRGRR 325
Query: 607 IQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQ 650
+ +++ ++ PW E+ + Q
Sbjct: 326 LIANIADWLELHPA-----------EKRQPWCVEIPRLAEQAMQ 358
Score = 83.3 bits (206), Expect = 1e-16
Identities = 30/174 (17%), Positives = 60/174 (34%), Gaps = 11/174 (6%)
Query: 1 MSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAAC 59
MS A VI +AL G+ ++ G L +A + + +E+
Sbjct: 1 MSVSAFNRRWA-AVILEALTRHGVRHICIAPGSRSTLLTLAAAENSAFIHHTHFDERGLG 59
Query: 60 YAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHE--GIGGF 117
+ A + ++K+P +V SG + + + + A + ++++ + + E G
Sbjct: 60 HLALGLAKVSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLILL--TADRPPELIDCGAN 117
Query: 118 QECPQVELARPYCKYSA---RPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLP 168
Q Q + + +S RP V G + N P
Sbjct: 118 QAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLHAGGVHI--NCP 169
Score = 53.3 bits (128), Expect = 3e-07
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 175 GTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIV 234
G G G L A A GK + + GD + + L L + P++L++V
Sbjct: 414 GASGIDG-LLSTAAGVQR-----ASGKPTLAIVGDLSALYDLNALALLRQVSAPLVLIVV 467
Query: 235 NNNG 238
NNNG
Sbjct: 468 NNNG 471
Score = 34.0 bits (78), Expect = 0.27
Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 17/98 (17%)
Query: 959 LPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSP----PTSLGPSLRYEKMMAVFGHD 1014
P++L++VNNNG G I +E A+F
Sbjct: 460 APLVLIVVNNNG--GQ--------IFSLLPTPQSERERFYLMPQNVH--FEHAAAMFELK 507
Query: 1015 GYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052
+ +++ A + T ++I +++N + +
Sbjct: 508 YHRPQNWQELETAFADAWR-TPTTTVIEMVVNDTDGAQ 544
Score = 29.8 bits (67), Expect = 6.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 647 TNRQVKLPVILVIVNNNG 664
RQV P++L++VNNNG
Sbjct: 454 LLRQVSAPLVLIVVNNNG 471
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.3 bits (143), Expect = 7e-09
Identities = 55/324 (16%), Positives = 92/324 (28%), Gaps = 116/324 (35%)
Query: 1 MSED-YDEELSANQVIAQALKFQGIEYVFGIVGI----PVIELAMACQQEGIHYIGMR-- 53
M D Y +A V +A Y F I+ I P + L IH+ G +
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNP-VNLT-------IHFGGEKGK 1682
Query: 54 ----NEQAACYAAQAIGYLTKKP----------GVCLVVSGP-GLLH-TFGGMANAQINC 97
N A + G L + GLL T Q
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF--RSEKGLLSAT----QFTQ--- 1733
Query: 98 WP-MLVIGGSCAQDHEGIGGFQECPQV------ELARPYCKYSARPPNIHLIGQ----HV 146
P + ++ + +D + G E Y+A L +
Sbjct: 1734 -PALTLMEKAAFEDLKSKGLIPADATFAGHSLGE-------YAA------LASLADVMSI 1779
Query: 147 EKAVRLSTFGKPGRSLLLNN-LPRHRLDAGTFGTMGV-----GLGFALAAALYC------ 194
E V + + R + + +PR L +G + + F+ A Y
Sbjct: 1780 ESLVEVVFY----RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK 1835
Query: 195 ---------NHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDE 245
N+ ++ V GD L+T+ ++N +
Sbjct: 1836 RTGWLVEIVNYNVENQQYVAA-GDLR------ALDTVTN--------VLNFIKLQK---- 1876
Query: 246 ATYAWLDIIK--KSNMSEDYDEEL 267
+DII+ KS E+ + L
Sbjct: 1877 -----IDIIELQKSLSLEEVEGHL 1895
Score = 56.2 bits (135), Expect = 6e-08
Identities = 85/495 (17%), Positives = 137/495 (27%), Gaps = 170/495 (34%)
Query: 264 DEELSANQVIAQALKFQGIEYVFGIV-------GIPVIELAMAC------QQEGIH---- 306
D+E + KF G YV +V V+ L + + IH
Sbjct: 51 DDEPTT--PAELVGKFLG--YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAA 106
Query: 307 --------YIGMRNEQAACY--AAQAIGYLTKKPGVCLVVSGPGLL-HTFGGMANAQINC 355
+ E Y A K S L G NAQ+
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKK------SNSALFRAVGEG--NAQL-- 156
Query: 356 WPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPN----IHLIGQHVEKAVRLS 411
+ + GG Q G + + EL Y Y I + + + +R +
Sbjct: 157 --VAIFGG---Q-----GNTDDYFE-ELRDLYQTY---HVLVGDLIKFSAETLSELIRTT 202
Query: 412 T-----FGK--------------PGVSYLD-----FPANLLAQRINQSALVPTPKVLEPT 447
F + P YL P + Q + V T K+L T
Sbjct: 203 LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH---YVVTAKLLGFT 259
Query: 448 LPWPGIAELKQASQ-LILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVII 506
PG EL+ + ++ ++ + T W + R + L I
Sbjct: 260 ---PG--ELRSYLKGATGHSQG--LVTAVAIAETDSW---ESFFVSVRKAITV---LFFI 306
Query: 507 GKGA--AYSQAETELLSFVNSFNLPF-LPTPM--GKGVVPDAHPNCVSAARTH------- 554
G AY +S +P+PM + + + V+ +H
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV 366
Query: 555 --ALQNAD--LVL------LLGARLNWILHFGRAP-------------------RF---- 581
+L N LV+ L G LN L +AP RF
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYG--LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVA 424
Query: 582 --------KSNVKIIQVDLNAEELH-NSVQAAVAI-----QSDVRLT----VQQLKQMLS 623
+I DL + N+ + + SD+R+ +++ +
Sbjct: 425 SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII 484
Query: 624 HTQRNW----SFSAT 634
W F AT
Sbjct: 485 RLPVKWETTTQFKAT 499
Score = 52.0 bits (124), Expect = 1e-06
Identities = 55/397 (13%), Positives = 104/397 (26%), Gaps = 163/397 (41%)
Query: 258 NMSED-YDEELSANQVIAQALKFQGIEYVFGIVGI----PVIELAMACQQEGIHYIGMR- 311
M D Y +A V +A Y F I+ I P + L IH+ G +
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNP-VNLT-------IHFGGEKG 1681
Query: 312 -----NEQAACYAAQAIGYLTKKP----------GVCLVVSGP-GLLH-TFGGMANAQIN 354
N A + G L + GLL T Q
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF--RSEKGLLSAT----QFTQ-- 1733
Query: 355 CWP-MLVIGGSCAQDHEGIGGFQECPQV------ELARPYCKYSARPPNIHLIGQHVEKA 407
P + ++ + +D + G E Y+A
Sbjct: 1734 --PALTLMEKAAFEDLKSKGLIPADATFAGHSLGE-------YAA--------------- 1769
Query: 408 VRLSTFGKPGVSYLDFP--ANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILE 465
L++ V + ++ R G+ ++ A
Sbjct: 1770 --LASLA--DV--MSIESLVEVVFYR--------------------GMT-MQVAVPRDEL 1802
Query: 466 AKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNS 525
++ +I + P ++ EA +V + L+ VN
Sbjct: 1803 GRSNYGMIA--INPGRVAASFSQ---------EALQYVV-----ERVGKRTGWLVEIVN- 1845
Query: 526 FNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWILHFGRAPRFKSNV 585
+N+ + V+A AL VL + +
Sbjct: 1846 YNVE------NQQY--------VAAGDLRALDTVTNVL-------------------NFI 1872
Query: 586 KIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQML 622
K+ ++D+ I+ L++++++ L
Sbjct: 1873 KLQKIDI--------------IELQKSLSLEEVEGHL 1895
Score = 46.6 bits (110), Expect = 5e-05
Identities = 86/540 (15%), Positives = 150/540 (27%), Gaps = 178/540 (32%)
Query: 598 HNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVIL 657
H S++ + + + QL++ F+ P + + + P L
Sbjct: 13 HGSLEHVLLVPTASFFIASQLQE---------QFNKILP--EPTEGFAADDEPTT-PAEL 60
Query: 658 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVN--NNGIYGGFDETTYASIVESG 715
V G + G+ +S+VE +V V+ + + N G D A+ +
Sbjct: 61 V-----GKFLGY----VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQE 111
Query: 716 EVTTVLPVILVIVNNNGIYGGFDETTYASIVESGE-VTTVLPVIL---VIVNNNGIY--- 768
TT++ +I N Y + + + L V N +
Sbjct: 112 NDTTLVKTKELIKN----Y-------ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 769 GG-------FDE-----TTYASIVES--GEVTTVL-PVILVIVNNNGIYG-GFD------ 806
GG F+E TY +V L +I ++ ++ G +
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 807 ------ETTY-ASIVESGEVTTVLPVI--------LVIVNNNGI-YGGFDETTYASIVES 850
+ Y SI S P+I +V G G + S
Sbjct: 221 NPSNTPDKDYLLSIPIS------CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 851 GEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG----- 905
+ T + + ++ S S V + V+ I G+
Sbjct: 275 QGLVTAVAIAET-------------DSWESFFVS--VRKAITVLFFI----GVRCYEAYP 315
Query: 906 --GFDETTYASIVESGE-VTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPV- 961
+ +E+ E V + P +L I + V + + LP
Sbjct: 316 NTSLPPSILEDSLENNEGVPS--P-MLSIS-------NLTQEQVQDYVN--KTNSHLPAG 363
Query: 962 -ILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSL-GPSLRYEKMMA---------- 1009
+ I NG ++V SG PP SL G +L K A
Sbjct: 364 KQVEISLVNG---------AKNLVVSG------PPQSLYGLNLTLRKAKAPSGLDQSRIP 408
Query: 1010 ------VFG----------HDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKP 1053
F H L I + + K N+ N + P
Sbjct: 409 FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVK----------NNVSFNAKDIQIP 458
Score = 43.5 bits (102), Expect = 4e-04
Identities = 37/259 (14%), Positives = 80/259 (30%), Gaps = 82/259 (31%)
Query: 792 ILVIVNNN--------------GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG 837
IL IV NN I + + +IV+ T + + + + +
Sbjct: 1661 ILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Query: 838 GFDE----TTYASIVESGEVTTVLPVILVIVNNNGIY------GGFDE-TTYA--SIVES 884
T + P + ++ + G T+A S+
Sbjct: 1721 SEKGLLSATQFTQ-----------PALTLM--EKAAFEDLKSKGLIPADATFAGHSL--- 1764
Query: 885 GE------VTTVLPV--ILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNG 936
GE + V+ + ++ +V G+ T V E+ ++ +N
Sbjct: 1765 GEYAALASLADVMSIESLVEVVFYRGM-------TMQVAVPRDELGR-SNYGMIAINPGR 1816
Query: 937 IYGGFDETTYASIVE-----SGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTT 991
+ F + +VE +G + + IVN N + V +G++
Sbjct: 1817 VAASFSQEALQYVVERVGKRTGWL-------VEIVNYN-VENQ-------QYVAAGDLRA 1861
Query: 992 VSPPTSLGPSLRYEKMMAV 1010
+ ++ L + K+ +
Sbjct: 1862 LD---TVTNVLNFIKLQKI 1877
Score = 43.5 bits (102), Expect = 4e-04
Identities = 29/169 (17%), Positives = 56/169 (33%), Gaps = 36/169 (21%)
Query: 913 ASIVESGEVTTVLPVILVIVN--NNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNG 970
+S+VE +V V+ + + N G D A+ + TT++ +I N
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN--- 125
Query: 971 IYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYE--KMMAVFG----HDGYL------- 1017
Y + + + ++L ++ +++A+FG D Y
Sbjct: 126 -Y-------ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY 177
Query: 1018 CTTVPQIKQAMKKCLQTTTRPSLINILINPSADRK--PQNF---SWLTN 1061
T + +K +T L ++ K Q WL N
Sbjct: 178 QTYHVLVGDLIKFSAET-----LSELIRTTLDAEKVFTQGLNILEWLEN 221
Score = 43.1 bits (101), Expect = 6e-04
Identities = 44/314 (14%), Positives = 93/314 (29%), Gaps = 113/314 (35%)
Query: 596 ELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPV 655
+L+ + +AA + + +H + + FS
Sbjct: 1634 DLYKTSKAAQDV----------WNRADNHFKDTYGFS----------------------- 1660
Query: 656 ILVIVNNN--------------GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG 701
IL IV NN I + + +IV+ T + + + + +
Sbjct: 1661 ILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Query: 702 GFDE----TTYASIVESGEVTTVLPVILVIVNNNGIY------GGFDE-TTYA--SIVES 748
T + P + ++ + G T+A S+
Sbjct: 1721 SEKGLLSATQFTQ-----------PALTLM--EKAAFEDLKSKGLIPADATFAGHSL--- 1764
Query: 749 GE------VTTVLPV--ILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNG 800
GE + V+ + ++ +V G+ T V E+ ++ +N
Sbjct: 1765 GEYAALASLADVMSIESLVEVVFYRGM-------TMQVAVPRDELGR-SNYGMIAINPGR 1816
Query: 801 IYGGFDETTYASIVE-----SGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTT 855
+ F + +VE +G + + IVN N + V +G++
Sbjct: 1817 VAASFSQEALQYVVERVGKRTGWL-------VEIVNYN-VENQ-------QYVAAGDLRA 1861
Query: 856 VLPVILVIVNNNGI 869
+ V V+ N +
Sbjct: 1862 LDTVTNVL-NFIKL 1874
Score = 42.7 bits (100), Expect = 8e-04
Identities = 51/325 (15%), Positives = 95/325 (29%), Gaps = 120/325 (36%)
Query: 44 QEGIHYIGM-RNEQAACYAAQAI-----GYLTKKPGVCL---VVSGPGLL--HTFGGMAN 92
Q G GM + AAQ + + G + V++ P L H FGG
Sbjct: 1624 Q-GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIH-FGGEKG 1681
Query: 93 AQI--NCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAV 150
+I N M+ F+ + + + E +
Sbjct: 1682 KRIRENYSAMI---------------FETIV-----------DGKLKTEKIFKEINEHST 1715
Query: 151 RLSTFGKPGRSLLLNNLPRHRLDAGTFGT---MGVGLGFALAAALYCNHYAPGKRVV--- 204
TF + LL + + T + + A + +
Sbjct: 1716 SY-TFRSE-KGLL--SATQF--------TQPAL-----TLMEKAAF--------EDLKSK 1750
Query: 205 -CVQGDSAF-GFS-G-----------MELET---LVRYR-------LP--------VILV 232
+ D+ F G S G M +E+ +V YR +P ++
Sbjct: 1751 GLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMI 1810
Query: 233 IVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELS-AN------Q-VIA---QAL-KFQ 280
+N + F + A ++++ + + + N Q V A +AL
Sbjct: 1811 AINPGRVAASFSQE--ALQYVVER--VGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVT 1866
Query: 281 GIEYVFGIVGIPVIELAMACQQEGI 305
+ + I +IEL + E +
Sbjct: 1867 NVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 41.6 bits (97), Expect = 0.002
Identities = 47/303 (15%), Positives = 98/303 (32%), Gaps = 95/303 (31%)
Query: 535 MGKGVVPDAHPNCVSAARTHALQNADLVLL--LGARLNWI---------LHFG--RAPRF 581
MG D + AA+ AD G + I +HFG + R
Sbjct: 1631 MGM----DLYKTS-KAAQ-DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 582 KSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQEL 641
+ N + + D +L +++ + ++ +++F + ++
Sbjct: 1685 RENYSAMIFETIV---------------DGKLKTEKIFKEINEHSTSYTFRS-----EKG 1724
Query: 642 KLKCQT-NRQVKLPVILVIVNNNGIY------GGFDE-TTYA--SIVESGE------VTT 685
L T Q P + ++ + G T+A S+ GE +
Sbjct: 1725 LLS-ATQFTQ---PALTLM--EKAAFEDLKSKGLIPADATFAGHSL---GEYAALASLAD 1775
Query: 686 VLPV--ILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYA 743
V+ + ++ +V G+ T V E+ ++ +N + F +
Sbjct: 1776 VMSIESLVEVVFYRGM-------TMQVAVPRDELGR-SNYGMIAINPGRVAASFSQEALQ 1827
Query: 744 SIVE-----SGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNN 798
+VE +G + + IVN N + V +G++ + V V+ N
Sbjct: 1828 YVVERVGKRTGWL-------VEIVNYN-VENQ-------QYVAAGDLRALDTVTNVL-NF 1871
Query: 799 NGI 801
+
Sbjct: 1872 IKL 1874
Score = 40.0 bits (93), Expect = 0.005
Identities = 38/254 (14%), Positives = 78/254 (30%), Gaps = 80/254 (31%)
Query: 724 ILVIVNNN--------------GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG 769
IL IV NN I + + +IV+ T + + + + +
Sbjct: 1661 ILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Query: 770 GFDE----TTYASIVESGEVTTVLPVILVIVNNNGIY------GGFDE-TTYA--SIVES 816
T + P + ++ + G T+A S+
Sbjct: 1721 SEKGLLSATQFTQ-----------PALTLM--EKAAFEDLKSKGLIPADATFAGHSL--- 1764
Query: 817 GE------VTTVLPV--ILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNG 868
GE + V+ + ++ +V G+ T V E+ ++ +N
Sbjct: 1765 GEYAALASLADVMSIESLVEVVFYRGM-------TMQVAVPRDELGR-SNYGMIAINPGR 1816
Query: 869 IYGGFDETTYASIVE-----SGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTT 923
+ F + +VE +G + + IVN N + V +G++
Sbjct: 1817 VAASFSQEALQYVVERVGKRTGWL-------VEIVNYN-VENQ-------QYVAAGDLRA 1861
Query: 924 VLPVILVIVNNNGI 937
+ V V+ N +
Sbjct: 1862 LDTVTNVL-NFIKL 1874
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.6 bits (138), Expect = 2e-08
Identities = 85/510 (16%), Positives = 155/510 (30%), Gaps = 170/510 (33%)
Query: 199 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSN 258
P K V+ + G G + + L+ + Y+ + + I+ WL+ +K N
Sbjct: 149 PAKNVL-IDGVLGSGKTWVALDVCLSYK----VQCKMDFKIF---------WLN-LKNCN 193
Query: 259 MSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACY 318
E E L Q L +Q I+ + + I +R
Sbjct: 194 SPETVLEML-------QKLLYQ-------------IDPNWTSRSDHSSNIKLRIHSI--- 230
Query: 319 AAQAIGYLTKKPGV-CLV----VSGPGLLHTFGGMANAQINCWPMLVI---------GGS 364
A+ L KP CL+ V + F ++C +L+ +
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN------LSC-KILLTTRFKQVTDFLSA 283
Query: 365 CAQDH----EGIGGFQE------------CPQVELARPYCKYSARPPNIHLIG------- 401
H C +L R + P + +I
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN--PRRLSIIAESIRDGL 341
Query: 402 ------QHVEKAVRLSTFGKPGVSYLDFPANL------LAQRI-NQSALVPTPKVLEPTL 448
+HV +L+T + ++ L+ PA L+ + SA +PT +L L
Sbjct: 342 ATWDNWKHVNCD-KLTTIIESSLNVLE-PAEYRKMFDRLS--VFPPSAHIPT-ILLS--L 394
Query: 449 PWPGIAELKQASQLILE--AKAPLVIIGKVLEPTLPWPGI--------AELKQASRLILE 498
W + + +++ K L + + E T+ P I R I++
Sbjct: 395 IWFDVIK--SDVMVVVNKLHKYSL-VEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 499 A-----------KAPLVI-------IG---KGAAYSQAETELLSFVNSF-NLPFLPTPMG 536
P + IG K E + F F + FL
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI--EHPE-RMTLFRMVFLDFRFL----E 504
Query: 537 KGVVPDAHPNCVSAARTHALQNADLVL----------LLGARLNWILHFGRAPRFKSNV- 585
+ + D+ S + + LQ L +N IL F P+ + N+
Sbjct: 505 QKIRHDSTAWNASGSILNTLQ--QLKFYKPYICDNDPKYERLVNAILDF--LPKIEENLI 560
Query: 586 -----KIIQVDLNAEELHNSV--QAAVAIQ 608
++++ L AE ++ +A +Q
Sbjct: 561 CSKYTDLLRIALMAE--DEAIFEEAHKQVQ 588
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia,
iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A
{Methanosarcina barkeri}
Length = 170
Score = 48.6 bits (115), Expect = 2e-06
Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 14/116 (12%)
Query: 490 KQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVS 549
+ A+++I +AK PL+++G A + ++ + N+P T V+ D +
Sbjct: 25 EMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAATGSSLAVLADKDVDAKY 84
Query: 550 AARTHALQ--------------NADLVLLLGARLNWILHFGRAPRFKSNVKIIQVD 591
N D+++ +G + +I A + SN+K I ++
Sbjct: 85 INAHMLGFYLTDPKWPGLDGNGNYDMIITIGFKKFYINQVLSAAKNFSNLKTIAIE 140
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway,
protein-binding, UBI degradation, UBL conjugation
pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Length = 301
Score = 44.6 bits (106), Expect = 9e-05
Identities = 50/215 (23%), Positives = 80/215 (37%), Gaps = 57/215 (26%)
Query: 658 VIVNNNGIY--GGFDETTYASIVE-----SGEVTTVLPV---------ILVIVNNNGIY- 700
+ ++ IY GG+D + S VE + E V + IY
Sbjct: 58 SVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYV 117
Query: 701 -GGFDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIV 746
GGFD + + +E + + + + ++V + IY GG+D + V
Sbjct: 118 SGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSV 177
Query: 747 E-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-----SGEVTTV 788
E +G T V P+ V + N+ IY GGFD T + S VE + TTV
Sbjct: 178 EKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV 237
Query: 789 LPVIL------VIVNNNGIY--GGFDETTYASIVE 815
+ V +Y G+D + S +E
Sbjct: 238 TSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIE 272
Score = 44.6 bits (106), Expect = 9e-05
Identities = 50/215 (23%), Positives = 80/215 (37%), Gaps = 57/215 (26%)
Query: 692 VIVNNNGIY--GGFDETTYASIVE-----SGEVTTVLPV---------ILVIVNNNGIY- 734
+ ++ IY GG+D + S VE + E V + IY
Sbjct: 58 SVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYV 117
Query: 735 -GGFDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIV 780
GGFD + + +E + + + + ++V + IY GG+D + V
Sbjct: 118 SGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSV 177
Query: 781 E-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-----SGEVTTV 822
E +G T V P+ V + N+ IY GGFD T + S VE + TTV
Sbjct: 178 EKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV 237
Query: 823 LPVIL------VIVNNNGIY--GGFDETTYASIVE 849
+ V +Y G+D + S +E
Sbjct: 238 TSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIE 272
Score = 44.6 bits (106), Expect = 9e-05
Identities = 50/215 (23%), Positives = 80/215 (37%), Gaps = 57/215 (26%)
Query: 726 VIVNNNGIY--GGFDETTYASIVE-----SGEVTTVLPV---------ILVIVNNNGIY- 768
+ ++ IY GG+D + S VE + E V + IY
Sbjct: 58 SVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYV 117
Query: 769 -GGFDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIV 814
GGFD + + +E + + + + ++V + IY GG+D + V
Sbjct: 118 SGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSV 177
Query: 815 E-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-----SGEVTTV 856
E +G T V P+ V + N+ IY GGFD T + S VE + TTV
Sbjct: 178 EKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV 237
Query: 857 LPVIL------VIVNNNGIY--GGFDETTYASIVE 883
+ V +Y G+D + S +E
Sbjct: 238 TSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIE 272
Score = 44.6 bits (106), Expect = 9e-05
Identities = 50/215 (23%), Positives = 80/215 (37%), Gaps = 57/215 (26%)
Query: 760 VIVNNNGIY--GGFDETTYASIVE-----SGEVTTVLPV---------ILVIVNNNGIY- 802
+ ++ IY GG+D + S VE + E V + IY
Sbjct: 58 SVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYV 117
Query: 803 -GGFDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIV 848
GGFD + + +E + + + + ++V + IY GG+D + V
Sbjct: 118 SGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSV 177
Query: 849 E-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-----SGEVTTV 890
E +G T V P+ V + N+ IY GGFD T + S VE + TTV
Sbjct: 178 EKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV 237
Query: 891 LPVIL------VIVNNNGIY--GGFDETTYASIVE 917
+ V +Y G+D + S +E
Sbjct: 238 TSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIE 272
Score = 44.6 bits (106), Expect = 9e-05
Identities = 50/215 (23%), Positives = 80/215 (37%), Gaps = 57/215 (26%)
Query: 794 VIVNNNGIY--GGFDETTYASIVE-----SGEVTTVLPV---------ILVIVNNNGIY- 836
+ ++ IY GG+D + S VE + E V + IY
Sbjct: 58 SVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYV 117
Query: 837 -GGFDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIV 882
GGFD + + +E + + + + ++V + IY GG+D + V
Sbjct: 118 SGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSV 177
Query: 883 E-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-----SGEVTTV 924
E +G T V P+ V + N+ IY GGFD T + S VE + TTV
Sbjct: 178 EKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV 237
Query: 925 LPVIL------VIVNNNGIY--GGFDETTYASIVE 951
+ V +Y G+D + S +E
Sbjct: 238 TSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIE 272
Score = 43.8 bits (104), Expect = 2e-04
Identities = 50/215 (23%), Positives = 80/215 (37%), Gaps = 57/215 (26%)
Query: 828 VIVNNNGIY--GGFDETTYASIVE-----SGEVTTVLPV---------ILVIVNNNGIY- 870
+ ++ IY GG+D + S VE + E V + IY
Sbjct: 58 SVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYV 117
Query: 871 -GGFDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIV 916
GGFD + + +E + + + + ++V + IY GG+D + V
Sbjct: 118 SGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSV 177
Query: 917 E-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-----SGEVTTV 958
E +G T V P+ V + N+ IY GGFD T + S VE + TTV
Sbjct: 178 EKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV 237
Query: 959 LPVIL------VIVNNNGIY--GGFDEATYASIVE 985
+ V +Y G+D + S +E
Sbjct: 238 TSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIE 272
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat
motif, protein binding; HET: MSE; 1.35A {Homo sapiens}
SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A
2z32_A 3ade_A
Length = 308
Score = 42.3 bits (100), Expect = 6e-04
Identities = 44/165 (26%), Positives = 62/165 (37%), Gaps = 41/165 (24%)
Query: 658 VIVNNNGIY--GGFDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GG 702
V V + IY GG + + VE E V P++ V V N +Y GG
Sbjct: 117 VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGG 176
Query: 703 FDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-- 747
FD T + E E + + V V +N IY GG+D + VE
Sbjct: 177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERY 236
Query: 748 ---SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE 781
+ T V P+ + V+ IY GG+D T+ VE
Sbjct: 237 DVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVE 281
Score = 42.3 bits (100), Expect = 6e-04
Identities = 44/165 (26%), Positives = 62/165 (37%), Gaps = 41/165 (24%)
Query: 692 VIVNNNGIY--GGFDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GG 736
V V + IY GG + + VE E V P++ V V N +Y GG
Sbjct: 117 VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGG 176
Query: 737 FDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-- 781
FD T + E E + + V V +N IY GG+D + VE
Sbjct: 177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERY 236
Query: 782 ---SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE 815
+ T V P+ + V+ IY GG+D T+ VE
Sbjct: 237 DVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVE 281
Score = 42.3 bits (100), Expect = 6e-04
Identities = 44/165 (26%), Positives = 62/165 (37%), Gaps = 41/165 (24%)
Query: 726 VIVNNNGIY--GGFDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GG 770
V V + IY GG + + VE E V P++ V V N +Y GG
Sbjct: 117 VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGG 176
Query: 771 FDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-- 815
FD T + E E + + V V +N IY GG+D + VE
Sbjct: 177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERY 236
Query: 816 ---SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE 849
+ T V P+ + V+ IY GG+D T+ VE
Sbjct: 237 DVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVE 281
Score = 42.3 bits (100), Expect = 6e-04
Identities = 44/165 (26%), Positives = 62/165 (37%), Gaps = 41/165 (24%)
Query: 760 VIVNNNGIY--GGFDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GG 804
V V + IY GG + + VE E V P++ V V N +Y GG
Sbjct: 117 VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGG 176
Query: 805 FDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-- 849
FD T + E E + + V V +N IY GG+D + VE
Sbjct: 177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERY 236
Query: 850 ---SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE 883
+ T V P+ + V+ IY GG+D T+ VE
Sbjct: 237 DVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVE 281
Score = 42.3 bits (100), Expect = 6e-04
Identities = 44/165 (26%), Positives = 62/165 (37%), Gaps = 41/165 (24%)
Query: 794 VIVNNNGIY--GGFDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GG 838
V V + IY GG + + VE E V P++ V V N +Y GG
Sbjct: 117 VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGG 176
Query: 839 FDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-- 883
FD T + E E + + V V +N IY GG+D + VE
Sbjct: 177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERY 236
Query: 884 ---SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE 917
+ T V P+ + V+ IY GG+D T+ VE
Sbjct: 237 DVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVE 281
Score = 42.3 bits (100), Expect = 6e-04
Identities = 44/165 (26%), Positives = 62/165 (37%), Gaps = 41/165 (24%)
Query: 828 VIVNNNGIY--GGFDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GG 872
V V + IY GG + + VE E V P++ V V N +Y GG
Sbjct: 117 VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGG 176
Query: 873 FDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-- 917
FD T + E E + + V V +N IY GG+D + VE
Sbjct: 177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERY 236
Query: 918 ---SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE 951
+ T V P+ + V+ IY GG+D T+ VE
Sbjct: 237 DVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVE 281
Score = 41.6 bits (98), Expect = 0.001
Identities = 44/165 (26%), Positives = 62/165 (37%), Gaps = 41/165 (24%)
Query: 862 VIVNNNGIY--GGFDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GG 906
V V + IY GG + + VE E V P++ V V N +Y GG
Sbjct: 117 VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGG 176
Query: 907 FDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-- 951
FD T + E E + + V V +N IY GG+D + VE
Sbjct: 177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERY 236
Query: 952 ---SGEVTTVLPVIL------VIVNNNGIY--GGFDEATYASIVE 985
+ T V P+ + V+ IY GG+D T+ VE
Sbjct: 237 DVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVE 281
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo
sapiens}
Length = 302
Score = 39.2 bits (92), Expect = 0.005
Identities = 48/215 (22%), Positives = 75/215 (34%), Gaps = 58/215 (26%)
Query: 658 VIVNNNGIY--GGFDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GG 702
++ ++ GGF+ + V+ + T+V + V N +Y GG
Sbjct: 57 MVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGG 116
Query: 703 FDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVESG 749
FD +T S VE S E V P+ V V +Y GG+D + + +
Sbjct: 117 FDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQ-CLSTV 175
Query: 750 EV--------TTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-----SGEVTTV 788
E T + + V V NN +Y GG D VE + V
Sbjct: 176 ECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV 235
Query: 789 LPVIL------VIVNNNGIY--GGFDETTYASIVE 815
+ + V N +Y GG D + + VE
Sbjct: 236 ADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVE 270
Score = 39.2 bits (92), Expect = 0.005
Identities = 48/215 (22%), Positives = 75/215 (34%), Gaps = 58/215 (26%)
Query: 692 VIVNNNGIY--GGFDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GG 736
++ ++ GGF+ + V+ + T+V + V N +Y GG
Sbjct: 57 MVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGG 116
Query: 737 FDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVESG 783
FD +T S VE S E V P+ V V +Y GG+D + + +
Sbjct: 117 FDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQ-CLSTV 175
Query: 784 EV--------TTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-----SGEVTTV 822
E T + + V V NN +Y GG D VE + V
Sbjct: 176 ECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV 235
Query: 823 LPVIL------VIVNNNGIY--GGFDETTYASIVE 849
+ + V N +Y GG D + + VE
Sbjct: 236 ADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVE 270
Score = 39.2 bits (92), Expect = 0.005
Identities = 48/215 (22%), Positives = 75/215 (34%), Gaps = 58/215 (26%)
Query: 726 VIVNNNGIY--GGFDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GG 770
++ ++ GGF+ + V+ + T+V + V N +Y GG
Sbjct: 57 MVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGG 116
Query: 771 FDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVESG 817
FD +T S VE S E V P+ V V +Y GG+D + + +
Sbjct: 117 FDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQ-CLSTV 175
Query: 818 EV--------TTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-----SGEVTTV 856
E T + + V V NN +Y GG D VE + V
Sbjct: 176 ECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV 235
Query: 857 LPVIL------VIVNNNGIY--GGFDETTYASIVE 883
+ + V N +Y GG D + + VE
Sbjct: 236 ADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVE 270
Score = 39.2 bits (92), Expect = 0.005
Identities = 48/215 (22%), Positives = 75/215 (34%), Gaps = 58/215 (26%)
Query: 760 VIVNNNGIY--GGFDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GG 804
++ ++ GGF+ + V+ + T+V + V N +Y GG
Sbjct: 57 MVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGG 116
Query: 805 FDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVESG 851
FD +T S VE S E V P+ V V +Y GG+D + + +
Sbjct: 117 FDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQ-CLSTV 175
Query: 852 EV--------TTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-----SGEVTTV 890
E T + + V V NN +Y GG D VE + V
Sbjct: 176 ECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV 235
Query: 891 LPVIL------VIVNNNGIY--GGFDETTYASIVE 917
+ + V N +Y GG D + + VE
Sbjct: 236 ADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVE 270
Score = 39.2 bits (92), Expect = 0.005
Identities = 48/215 (22%), Positives = 75/215 (34%), Gaps = 58/215 (26%)
Query: 794 VIVNNNGIY--GGFDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GG 838
++ ++ GGF+ + V+ + T+V + V N +Y GG
Sbjct: 57 MVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGG 116
Query: 839 FDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVESG 885
FD +T S VE S E V P+ V V +Y GG+D + + +
Sbjct: 117 FDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQ-CLSTV 175
Query: 886 EV--------TTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-----SGEVTTV 924
E T + + V V NN +Y GG D VE + V
Sbjct: 176 ECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV 235
Query: 925 LPVIL------VIVNNNGIY--GGFDETTYASIVE 951
+ + V N +Y GG D + + VE
Sbjct: 236 ADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVE 270
Score = 38.4 bits (90), Expect = 0.009
Identities = 48/215 (22%), Positives = 75/215 (34%), Gaps = 58/215 (26%)
Query: 828 VIVNNNGIY--GGFDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GG 872
++ ++ GGF+ + V+ + T+V + V N +Y GG
Sbjct: 57 MVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGG 116
Query: 873 FDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVESG 919
FD +T S VE S E V P+ V V +Y GG+D + + +
Sbjct: 117 FDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQ-CLSTV 175
Query: 920 EV--------TTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-----SGEVTTV 958
E T + + V V NN +Y GG D VE + V
Sbjct: 176 ECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV 235
Query: 959 LPVIL------VIVNNNGIY--GGFDEATYASIVE 985
+ + V N +Y GG D + + VE
Sbjct: 236 ADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVE 270
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.051
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 9/29 (31%)
Query: 1025 KQAMKKCLQTTTR-------PSL-INILI 1045
KQA+KK LQ + + P+L I +
Sbjct: 19 KQALKK-LQASLKLYADDSAPALAIKATM 46
>3l78_A Regulatory protein SPX; transcription, transcriptional factor,
disulfide bond, redox-active center, transcription
regulati; 1.90A {Streptococcus mutans}
Length = 120
Score = 32.5 bits (75), Expect = 0.20
Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 613 LTVQQLKQMLSHTQRNWS--FSATSPWWQELKLKCQT---NRQVKL----PVIL---VIV 660
L+ +L ++LS+T+ S S +Q+L + + + L P +L +I+
Sbjct: 37 LSRDELLKILSYTENGTEDIISTRSKVFQKLDIDVDELSVSELINLISKNPSLLRRPIIM 96
Query: 661 NNNGIYGGFDETTYASI 677
+N + GF+E +
Sbjct: 97 DNKRMQIGFNEDEIRAF 113
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural
genomics, structur genomics consortium, SGC, kelch
repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Length = 306
Score = 33.8 bits (78), Expect = 0.26
Identities = 32/216 (14%), Positives = 58/216 (26%), Gaps = 58/216 (26%)
Query: 658 VIVNNNGIY--GGFDETTYASI----VESGEVTTVLPVIL------VIVNNNGIY--GGF 703
+ +N +Y GG + V + L IY GG
Sbjct: 51 CVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGS 110
Query: 704 DE-TTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASI---- 745
+ + + E + T ++ ++ N IY GG +
Sbjct: 111 EVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNS 170
Query: 746 VE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-----SGEVTT 787
E + T + P+I ++ + I+ GG + VE E
Sbjct: 171 CEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKM 230
Query: 788 VLPVIL------VIVNNNGIY--GGFDETTYASIVE 815
V P+ + +Y GF +
Sbjct: 231 VSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHIL 266
Score = 33.8 bits (78), Expect = 0.26
Identities = 32/216 (14%), Positives = 58/216 (26%), Gaps = 58/216 (26%)
Query: 692 VIVNNNGIY--GGFDETTYASI----VESGEVTTVLPVIL------VIVNNNGIY--GGF 737
+ +N +Y GG + V + L IY GG
Sbjct: 51 CVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGS 110
Query: 738 DE-TTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASI---- 779
+ + + E + T ++ ++ N IY GG +
Sbjct: 111 EVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNS 170
Query: 780 VE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-----SGEVTT 821
E + T + P+I ++ + I+ GG + VE E
Sbjct: 171 CEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKM 230
Query: 822 VLPVIL------VIVNNNGIY--GGFDETTYASIVE 849
V P+ + +Y GF +
Sbjct: 231 VSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHIL 266
Score = 33.8 bits (78), Expect = 0.26
Identities = 32/216 (14%), Positives = 58/216 (26%), Gaps = 58/216 (26%)
Query: 726 VIVNNNGIY--GGFDETTYASI----VESGEVTTVLPVIL------VIVNNNGIY--GGF 771
+ +N +Y GG + V + L IY GG
Sbjct: 51 CVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGS 110
Query: 772 DE-TTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASI---- 813
+ + + E + T ++ ++ N IY GG +
Sbjct: 111 EVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNS 170
Query: 814 VE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-----SGEVTT 855
E + T + P+I ++ + I+ GG + VE E
Sbjct: 171 CEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKM 230
Query: 856 VLPVIL------VIVNNNGIY--GGFDETTYASIVE 883
V P+ + +Y GF +
Sbjct: 231 VSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHIL 266
Score = 33.8 bits (78), Expect = 0.26
Identities = 32/216 (14%), Positives = 58/216 (26%), Gaps = 58/216 (26%)
Query: 760 VIVNNNGIY--GGFDETTYASI----VESGEVTTVLPVIL------VIVNNNGIY--GGF 805
+ +N +Y GG + V + L IY GG
Sbjct: 51 CVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGS 110
Query: 806 DE-TTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASI---- 847
+ + + E + T ++ ++ N IY GG +
Sbjct: 111 EVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNS 170
Query: 848 VE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-----SGEVTT 889
E + T + P+I ++ + I+ GG + VE E
Sbjct: 171 CEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKM 230
Query: 890 VLPVIL------VIVNNNGIY--GGFDETTYASIVE 917
V P+ + +Y GF +
Sbjct: 231 VSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHIL 266
Score = 33.8 bits (78), Expect = 0.26
Identities = 32/216 (14%), Positives = 58/216 (26%), Gaps = 58/216 (26%)
Query: 794 VIVNNNGIY--GGFDETTYASI----VESGEVTTVLPVIL------VIVNNNGIY--GGF 839
+ +N +Y GG + V + L IY GG
Sbjct: 51 CVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGS 110
Query: 840 DE-TTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASI---- 881
+ + + E + T ++ ++ N IY GG +
Sbjct: 111 EVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNS 170
Query: 882 VE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-----SGEVTT 923
E + T + P+I ++ + I+ GG + VE E
Sbjct: 171 CEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKM 230
Query: 924 VLPVIL------VIVNNNGIY--GGFDETTYASIVE 951
V P+ + +Y GF +
Sbjct: 231 VSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHIL 266
Score = 33.1 bits (76), Expect = 0.43
Identities = 32/216 (14%), Positives = 58/216 (26%), Gaps = 58/216 (26%)
Query: 828 VIVNNNGIY--GGFDETTYASI----VESGEVTTVLPVIL------VIVNNNGIY--GGF 873
+ +N +Y GG + V + L IY GG
Sbjct: 51 CVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGS 110
Query: 874 DE-TTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASI---- 915
+ + + E + T ++ ++ N IY GG +
Sbjct: 111 EVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNS 170
Query: 916 VE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-----SGEVTT 957
E + T + P+I ++ + I+ GG + VE E
Sbjct: 171 CEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKM 230
Query: 958 VLPVIL------VIVNNNGIY--GGFDEATYASIVE 985
V P+ + +Y GF +
Sbjct: 231 VSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHIL 266
>1z3e_A Regulatory protein SPX; bacterial transcription regulation,
disulfide stress; 1.50A {Bacillus subtilis} SCOP:
c.47.1.12 PDB: 3gfk_A 3ihq_A
Length = 132
Score = 31.8 bits (73), Expect = 0.38
Identities = 15/77 (19%), Positives = 34/77 (44%), Gaps = 12/77 (15%)
Query: 613 LTVQQLKQMLSHTQRNWS--FSATSPWWQELKLKCQT---NRQVKL----PVIL---VIV 660
L++ ++KQ+L T+ S S +Q+L + ++ +L P +L +I+
Sbjct: 38 LSIDEIKQILRMTEDGTDEIISTRSKVFQKLNVNVESMPLQDLYRLINEHPGLLRRPIII 97
Query: 661 NNNGIYGGFDETTYASI 677
+ + G++E
Sbjct: 98 DEKRLQVGYNEDEIRRF 114
>3pt5_A NANS (YJHS), A 9-O-acetyl N-acetylneuraminic acid; SGNH hydrolase,
9-O-acetyl N-acetylneuraminic acid esterase, structural
genomics; 1.60A {Escherichia coli O157}
Length = 337
Score = 33.2 bits (74), Expect = 0.46
Identities = 19/104 (18%), Positives = 27/104 (25%), Gaps = 14/104 (13%)
Query: 109 QDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLP 168
H I P C ++ P H + + P
Sbjct: 47 APHPRIKQLARFAHTHPGGPSCHFNDIIPLTHCPHDVQDMQSY--------------HHP 92
Query: 169 RHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAF 212
+GT+G L A + A V C +G SAF
Sbjct: 93 LATNHQTQYGTVGQALHIARKLLPFIPDNAGILIVPCCRGGSAF 136
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit,
somatic form; pyruvate_dehydrogenase_complex, human,
multienzyme_complex_component; HET: TPP; 1.90A {Homo
sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A
3exh_A* 3exg_A 3exf_A*
Length = 365
Score = 33.0 bits (76), Expect = 0.46
Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 9/78 (11%)
Query: 170 HRLDAGTFGTMG-VGLGFALAAAL-YCNHYAPGKRV-VCVQGDSAFGFSGMELETL---V 223
H +G G VG L A + Y V + + GD A G E
Sbjct: 129 HMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAAN-QGQIFEAYNMAA 187
Query: 224 RYRLPVILVIVNNNGIYG 241
++LP I + NN YG
Sbjct: 188 LWKLPCIFICENNR--YG 203
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural
genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Length = 174
Score = 31.7 bits (71), Expect = 0.68
Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 25/126 (19%)
Query: 486 IAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSF---NLPFLPTP------MG 536
+ + K + +I +AK PL+I+G E+ V F ++ + T +
Sbjct: 22 LEKGKPVANMIKKAKRPLLIVG-----PDMTDEMFERVKKFVEKDITVVATGSAITRFID 76
Query: 537 KGVVPDAHPNCVSAARTH----------ALQNADLVLLLGARLNWILHFGRAPR-FKSNV 585
G+ + + N DLVL+LG+ A + F ++
Sbjct: 77 AGLGEKVNYAVLHELTQFLLDPDWKGFDGQGNYDLVLMLGSIYYHGSQMLAAIKNFAPHI 136
Query: 586 KIIQVD 591
+ + +D
Sbjct: 137 RALAID 142
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target
11229F, transport protein, structural genomics; 2.02A
{Bacillus halodurans c-125}
Length = 305
Score = 31.6 bits (72), Expect = 1.1
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 32 GIPVIEL-AMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPG 82
GIP++ + A ++G N A AA + L G V++ P
Sbjct: 86 GIPIVLFDSGAPDSHAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVITLPN 137
Score = 31.6 bits (72), Expect = 1.1
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 290 GIPVIEL-AMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPG 340
GIP++ + A ++G N A AA + L G V++ P
Sbjct: 86 GIPIVLFDSGAPDSHAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVITLPN 137
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II,
11231J, structur genomics, protein structure initiative;
2.20A {Bacteroides fragilis}
Length = 304
Score = 31.6 bits (72), Expect = 1.3
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 32 GIPVIEL-AMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSG 80
GIP I + + + + G + Q+ +AA+ + L ++
Sbjct: 94 GIPYIYIDSQIKDAPPLAFFGQNSHQSGYFAARMLMLLAVNDREIVIFRK 143
Score = 31.6 bits (72), Expect = 1.3
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 290 GIPVIEL-AMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSG 338
GIP I + + + + G + Q+ +AA+ + L ++
Sbjct: 94 GIPYIYIDSQIKDAPPLAFFGQNSHQSGYFAARMLMLLAVNDREIVIFRK 143
>3h09_A IGA1 protease, immunoglobulin A1 protease; serine protease, beta
helix, hydrolase, M protease, secreted, transmembrane,
virulence; 1.75A {Haemophilus influenzae}
Length = 989
Score = 31.6 bits (70), Expect = 1.9
Identities = 37/352 (10%), Positives = 85/352 (24%), Gaps = 12/352 (3%)
Query: 658 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEV 717
+VN+N T S++ T + +N + + +
Sbjct: 523 RLVNHNTSKTSTVTITGESLITDPNTITPYNIDAPDEDNPYAFRRIKDGGQLYLNLENYT 582
Query: 718 TTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYA 777
L + + + + G+ + ++ NN GF+
Sbjct: 583 YYAL---RKGASTRSELPKNSGESNENWLYMGKTSDEAKRNVMNHINNERMNGFNGYFGE 639
Query: 778 SIVESGEVTTVLPVILVIVNNNGIYGGFD-----ETTYASIVESGEVTTVLPVILVIVNN 832
++ V N + GG + + ++ SG T I I +
Sbjct: 640 EEGKNNGNLNVTFKGKSEQNRFLLTGGTNLNGDLKVEKGTLFLSGRPTPHARDIAGISST 699
Query: 833 NGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLP 892
+ +VE + + V NN A+I + +
Sbjct: 700 KKDQHFAENNE--VVVEDDWINRNFKATNINVTNNATLYS--GRNVANITSNITASDNAK 755
Query: 893 VILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVES 952
V + + + D T Y + L + + +
Sbjct: 756 VHIGYKAGDTVCVRSDYTGYVTCTTDKLSDKALNSFNATNVSGNVNLSGNANFVLGKANL 815
Query: 953 GEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRY 1004
+ V + N + ++ + ++ Y
Sbjct: 816 FGTISGTGNSQVRLTENSHWHLTGDSNVNQLNLDKGHIHLNAQNDANKVTTY 867
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.407
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 16,760,851
Number of extensions: 1113724
Number of successful extensions: 3032
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2788
Number of HSP's successfully gapped: 204
Length of query: 1065
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 962
Effective length of database: 3,825,930
Effective search space: 3680544660
Effective search space used: 3680544660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.5 bits)