BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14417
(120 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q27|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli
pdb|2Q27|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli
pdb|2Q28|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With
Adenosine-5`-Diphosphate
pdb|2Q28|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With
Adenosine-5`-Diphosphate
pdb|2Q29|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With Acetyl Coenzyme A
pdb|2Q29|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With Acetyl Coenzyme A
Length = 564
Score = 64.3 bits (155), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 70/116 (60%), Gaps = 5/116 (4%)
Query: 1 MGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNA 60
M KG++ D HP +AAR+ AL NAD+V+L+GARLNW+L G+ + ++ + IQ+D+
Sbjct: 247 MAKGILEDTHPLSAAAARSFALANADVVMLVGARLNWLLAHGKKG-WAADTQFIQLDIEP 305
Query: 61 EELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQ 116
+E+ ++ AV + D+ ++Q ML+ ++N +F+ W L + Q N Q
Sbjct: 306 QEIDSNRPIAVPVVGDIASSMQ---GMLAELKQN-TFTTPLVWRDILNIHKQQNAQ 357
>pdb|2C31|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase In Complex
With The Cofactor Derivative Thiamin-2-Thiazolone
Diphosphate And Adenosine Diphosphate
pdb|2C31|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase In Complex
With The Cofactor Derivative Thiamin-2-Thiazolone
Diphosphate And Adenosine Diphosphate
pdb|2JI6|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp And Oxalyl-Coa
pdb|2JI6|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp And Oxalyl-Coa
pdb|2JI7|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase With Covalent
Reaction Intermediate
pdb|2JI7|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase With Covalent
Reaction Intermediate
pdb|2JI8|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Formyl-Coa
pdb|2JI8|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Formyl-Coa
pdb|2JI9|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp
pdb|2JI9|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp
pdb|2JIB|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Coenzyme-A
pdb|2JIB|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Coenzyme-A
Length = 568
Score = 62.4 bits (150), Expect = 6e-11, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 1 MGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNV-KIIQVDLN 59
M KG++PD HP +A R AL D+ +L+GARLNW++ G+ + + K +Q+D+
Sbjct: 249 MAKGLLPDNHPQSAAATRAFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQ 308
Query: 60 AEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNR 115
A E+ ++ A + D++ V L++ L + A + W LK K N+
Sbjct: 309 ANEMDSNQPIAAPVVGDIKSAVSLLRKALKGAPK-----ADAEWTGALKAKVDGNK 359
>pdb|1YBH|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide
Chlorimuron Ethyl
pdb|1YHY|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Metsulfuron Methyl
pdb|1YHZ|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Chlorsulfuron
pdb|1YI0|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Sulfometuron Methyl
pdb|1YI1|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Tribenuron Methyl
pdb|1Z8N|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With An Imidazolinone Herbicide,
Imazaquin
Length = 590
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 20 HALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRL 79
+A++++DL+L G R + + G+ F S KI+ +D+++ E+ + V++ DV+L
Sbjct: 274 YAVEHSDLLLAFGVRFDDRVT-GKLEAFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKL 332
Query: 80 TVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQ 112
+Q + ++L + W EL ++ Q
Sbjct: 333 ALQGMNKVLENRAEELKLD-FGVWRNELNVQKQ 364
>pdb|3E9Y|A Chain A, Arabidopsis Thaliana Acetohydroxyacid Synthase In Complex
With Monosulfuron
pdb|3EA4|A Chain A, Arabidopsis Thaliana Acetohydroxyacid Synthase In Complex
With Monosulfuron-Ester
Length = 584
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 20 HALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRL 79
+A++++DL+L G R + + G+ F S KI+ +D+++ E+ + V++ DV+L
Sbjct: 273 YAVEHSDLLLAFGVRFDDRVT-GKLEAFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKL 331
Query: 80 TVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQ 112
+Q + ++L + W EL ++ Q
Sbjct: 332 ALQGMNKVLENRAEELKLD-FGVWRNELNVQKQ 363
>pdb|1POW|A Chain A, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
pdb|1POW|B Chain B, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
Length = 585
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 19/112 (16%)
Query: 2 GKGVVPDAHPNCVSAAR-------THALQNADLVLLLGARLNWMLHFGRAPR-FKSNVKI 53
KG+V D +P + +A AL AD+VL +G F + FK+
Sbjct: 239 AKGIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYP----FAEVSKAFKNTRYF 294
Query: 54 IQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQ 105
+Q+D++ +L + +A+ +D + T+ + +S + ++PWWQ
Sbjct: 295 LQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSERE-------STPWWQ 339
>pdb|1POX|A Chain A, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
pdb|1POX|B Chain B, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
Length = 585
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 19/112 (16%)
Query: 2 GKGVVPDAHPNCVSAAR-------THALQNADLVLLLGARLNWMLHFGRAPR-FKSNVKI 53
KG+V D +P + +A AL AD+VL +G F + FK+
Sbjct: 239 AKGIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYP----FAEVSKAFKNTRYF 294
Query: 54 IQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQ 105
+Q+D++ +L + +A+ +D + T+ + +S + ++PWWQ
Sbjct: 295 LQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSERE-------STPWWQ 339
>pdb|1Y9D|A Chain A, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|B Chain B, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|C Chain C, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|D Chain D, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
Length = 603
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 19/112 (16%)
Query: 2 GKGVVPDAHPNCVSAAR-------THALQNADLVLLLGARLNWMLHFGRAPR-FKSNVKI 53
KG+V D +P + +A AL AD+VL +G F + FK+
Sbjct: 247 AKGIVADRYPAYLGSANRAAQKPANEALAQADVVLFVGNNYP----FAEVSKAFKNTRYF 302
Query: 54 IQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQ 105
+Q+D++ +L + +A+ +D + T+ + +S + ++PWWQ
Sbjct: 303 LQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSERE-------STPWWQ 347
>pdb|4FEE|A Chain A, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal B
pdb|4FEE|B Chain B, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal B
pdb|4FEG|A Chain A, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal A
pdb|4FEG|B Chain B, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal A
Length = 603
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 19/112 (16%)
Query: 2 GKGVVPDAHPNCVSAAR-------THALQNADLVLLLGARLNWMLHFGRAPR-FKSNVKI 53
KG+V D +P + +A AL AD+VL +G F + FK+
Sbjct: 247 AKGIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYP----FAEVSKAFKNTRYF 302
Query: 54 IQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQ 105
+Q+D++ +L + +A+ +D + T+ + +S + ++PWWQ
Sbjct: 303 LQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSERE-------STPWWQ 347
>pdb|2EZ4|A Chain A, Pyruvate Oxidase Variant F479w
pdb|2EZ4|B Chain B, Pyruvate Oxidase Variant F479w
pdb|2EZ8|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Lactyl-Thiamin Diphosphate
pdb|2EZ8|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Lactyl-Thiamin Diphosphate
pdb|2EZ9|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate Analogue 2-Phosphonolactyl-Thiamin
Diphosphate
pdb|2EZ9|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate Analogue 2-Phosphonolactyl-Thiamin
Diphosphate
pdb|2EZT|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Hydroxyethyl-Thiamin Diphosphate
pdb|2EZT|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Hydroxyethyl-Thiamin Diphosphate
pdb|2EZU|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Acetyl-Thiamin Diphosphate
pdb|2EZU|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Acetyl-Thiamin Diphosphate
Length = 603
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 19/112 (16%)
Query: 2 GKGVVPDAHPNCVSAAR-------THALQNADLVLLLGARLNWMLHFGRAPR-FKSNVKI 53
KG+V D +P + +A AL AD+VL +G F + FK+
Sbjct: 247 AKGIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYP----FAEVSKAFKNTRYF 302
Query: 54 IQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQ 105
+Q+D++ +L + +A+ +D + T+ + +S + ++PWWQ
Sbjct: 303 LQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSERE-------STPWWQ 347
>pdb|3IAE|A Chain A, Structure Of Benzaldehyde Lyase A28s Mutant With
Benzoylphosphonate
pdb|3IAE|B Chain B, Structure Of Benzaldehyde Lyase A28s Mutant With
Benzoylphosphonate
Length = 570
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 32/61 (52%)
Query: 26 DLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLK 85
DLVL+LGAR G + ++IQVD +A EL A+ I +DV T++ L
Sbjct: 271 DLVLMLGARFGLNTGHGSGQLIPHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALA 330
Query: 86 Q 86
Q
Sbjct: 331 Q 331
>pdb|3D7K|A Chain A, Crystal Structure Of Benzaldehyde Lyase In Complex With
The Inhibitor Mbp
pdb|3D7K|B Chain B, Crystal Structure Of Benzaldehyde Lyase In Complex With
The Inhibitor Mbp
Length = 570
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 32/61 (52%)
Query: 26 DLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLK 85
DLVL+LGAR G + ++IQVD +A EL A+ I +DV T++ L
Sbjct: 271 DLVLMLGARFGLNTGHGSGQLIPHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALA 330
Query: 86 Q 86
Q
Sbjct: 331 Q 331
>pdb|2UZ1|B Chain B, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
pdb|2UZ1|C Chain C, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
Length = 563
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 32/61 (52%)
Query: 26 DLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLK 85
DLVL+LGAR G + ++IQVD +A EL A+ I +DV T++ L
Sbjct: 271 DLVLMLGARFGLNTGHGSGQLIPHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALA 330
Query: 86 Q 86
Q
Sbjct: 331 Q 331
>pdb|3IAF|A Chain A, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
pdb|3IAF|B Chain B, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
pdb|3IAF|C Chain C, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
pdb|3IAF|D Chain D, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
Length = 570
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 32/61 (52%)
Query: 26 DLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLK 85
DLVL+LGAR G + ++IQVD +A EL A+ I +DV T++ L
Sbjct: 271 DLVLMLGARFGLNTGHGSGQLIPHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALA 330
Query: 86 Q 86
Q
Sbjct: 331 Q 331
>pdb|2AG0|A Chain A, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2AG0|B Chain B, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2AG0|C Chain C, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2AG0|D Chain D, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2UZ1|A Chain A, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
pdb|2UZ1|D Chain D, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
Length = 563
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 32/61 (52%)
Query: 26 DLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLK 85
DLVL+LGAR G + ++IQVD +A EL A+ I +DV T++ L
Sbjct: 271 DLVLMLGARFGLNTGHGSGQLIPHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALA 330
Query: 86 Q 86
Q
Sbjct: 331 Q 331
>pdb|2AG1|A Chain A, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet
pdb|2AG1|B Chain B, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet
pdb|2AG1|C Chain C, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet
pdb|2AG1|D Chain D, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet
Length = 563
Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 31/61 (50%)
Query: 26 DLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLK 85
DLVL LGAR G + ++IQVD +A EL A+ I +DV T++ L
Sbjct: 271 DLVLXLGARFGLNTGHGSGQLIPHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALA 330
Query: 86 Q 86
Q
Sbjct: 331 Q 331
>pdb|3EYA|A Chain A, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|B Chain B, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|C Chain C, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|D Chain D, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|E Chain E, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|F Chain F, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|G Chain G, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|H Chain H, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|I Chain I, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|J Chain J, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|K Chain K, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|L Chain L, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
Length = 549
Score = 34.7 bits (78), Expect = 0.012, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 20 HALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRL 79
H + NAD ++LLG + F + ++ KIIQ+D+N + + +A+ D++
Sbjct: 261 HTMMNADTLVLLGTQ------FPYRAFYPTDAKIIQIDINPASIGAHSKVDMALVGDIKS 314
Query: 80 TVQQL 84
T++ L
Sbjct: 315 TLRAL 319
>pdb|3EY9|A Chain A, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EY9|B Chain B, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
Length = 572
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 20 HALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRL 79
H + NAD ++LLG + F + ++ KIIQ+D+N + + +A+ D++
Sbjct: 261 HTMMNADTLVLLGTQ------FPYRAFYPTDAKIIQIDINPASIGAHSKVDMALVGDIKS 314
Query: 80 TVQQL 84
T++ L
Sbjct: 315 TLRAL 319
>pdb|1N0H|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl
pdb|1N0H|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl
pdb|1T9A|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Tribenuron Methyl
pdb|1T9A|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Tribenuron Methyl
pdb|1T9B|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorsulfuron
pdb|1T9B|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorsulfuron
pdb|1T9C|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Sulfometuron
Methyl
pdb|1T9C|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Sulfometuron
Methyl
pdb|1T9D|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|C Chain C, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|D Chain D, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
Length = 677
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 21 ALQNADLVLLLGARLNWMLHFGRAPRFKSNVK---------IIQVDLNAEELHNSVQAAV 71
A+QNADL++ +GAR + + G +F + II +++ + ++ VQ +
Sbjct: 353 AVQNADLIIAVGARFDDRVT-GNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQI 411
Query: 72 AIQSDVRLTV-QQLKQMLSHTQRNWSFSATSPWWQE 106
A++ D + + + ++ +R+ F+ + W +E
Sbjct: 412 AVEGDATTNLGKMMSKIFPVKERSEWFAQINKWKKE 447
>pdb|1JSC|A Chain A, Crystal Structure Of The Catalytic Subunit Of Yeast
Acetohydroxyacid Synthase: A Target For Herbicidal
Inhibitors
pdb|1JSC|B Chain B, Crystal Structure Of The Catalytic Subunit Of Yeast
Acetohydroxyacid Synthase: A Target For Herbicidal
Inhibitors
Length = 630
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 21 ALQNADLVLLLGARLNWMLHFGRAPRFKSNVK---------IIQVDLNAEELHNSVQAAV 71
A+QNADL++ +GAR + + G +F + II +++ + ++ VQ +
Sbjct: 306 AVQNADLIIAVGARFDDRVT-GNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQI 364
Query: 72 AIQSDVRLTV-QQLKQMLSHTQRNWSFSATSPWWQE 106
A++ D + + + ++ +R+ F+ + W +E
Sbjct: 365 AVEGDATTNLGKMMSKIFPVKERSEWFAQINKWKKE 400
>pdb|2PAN|A Chain A, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|B Chain B, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|C Chain C, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|D Chain D, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|E Chain E, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|F Chain F, Crystal Structure Of E. Coli Glyoxylate Carboligase
Length = 616
Score = 28.9 bits (63), Expect = 0.68, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 9/120 (7%)
Query: 2 GKGVVPDAH---PNCVSAARTHALQNA-----DLVLLLGARLNWMLHFGRAPRFKSNVKI 53
G G +PD H V H NA D V +G R H G ++ KI
Sbjct: 263 GWGCIPDDHELXAGXVGLQTAHRYGNATLLASDXVFGIGNRFA-NRHTGSVEKYTEGRKI 321
Query: 54 IQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQT 113
+ +D+ ++ + + I SD + + L ++ Q+ W + + + +T
Sbjct: 322 VHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVAQEXQKAGRLPCRKEWVADCQQRKRT 381
>pdb|2VJY|A Chain A, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|B Chain B, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|C Chain C, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|D Chain D, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VK4|A Chain A, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|B Chain B, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|C Chain C, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|D Chain D, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
Length = 563
Score = 28.9 bits (63), Expect = 0.87, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 8/44 (18%)
Query: 1 MGKGVVPDAHP--------NCVSAARTHALQNADLVLLLGARLN 36
MGKG + + HP S A A+++ADLVL +GA L+
Sbjct: 247 MGKGSIDEKHPRFGGVYVGTLSSPAVKEAVESADLVLSVGALLS 290
>pdb|1RP1|A Chain A, Dog Pancreatic Lipase Related Protein 1
Length = 450
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 36 NWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNW 95
NW+L + V I VD + QAA ++VR+ Q+ QMLS N+
Sbjct: 86 NWLLDMCKNMFKVEEVNCICVDWKKGSQTSYTQAA----NNVRVVGAQVAQMLSMLSANY 141
Query: 96 SFSAT 100
S+S +
Sbjct: 142 SYSPS 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.129 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,209,730
Number of Sequences: 62578
Number of extensions: 98259
Number of successful extensions: 258
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 240
Number of HSP's gapped (non-prelim): 27
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)