Query psy14417
Match_columns 120
No_of_seqs 180 out of 1013
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 19:20:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14417.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14417hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1185|consensus 99.9 4.7E-21 1E-25 143.7 11.0 116 1-118 253-369 (571)
2 PF00205 TPP_enzyme_M: Thiamin 99.8 6.5E-21 1.4E-25 124.1 7.9 84 1-84 47-137 (137)
3 COG0028 IlvB Thiamine pyrophos 99.8 7.7E-19 1.7E-23 136.4 10.5 104 1-114 236-346 (550)
4 TIGR03254 oxalate_oxc oxalyl-C 99.8 8.8E-19 1.9E-23 136.3 10.6 110 1-114 242-351 (554)
5 PRK08979 acetolactate synthase 99.8 2E-18 4.4E-23 134.7 11.4 112 1-113 242-360 (572)
6 PRK07979 acetolactate synthase 99.8 2.1E-18 4.4E-23 134.7 11.3 112 1-113 242-360 (574)
7 TIGR01504 glyox_carbo_lig glyo 99.8 2.9E-18 6.2E-23 134.3 11.3 112 1-113 238-357 (588)
8 PRK09259 putative oxalyl-CoA d 99.8 2.5E-18 5.4E-23 134.1 10.7 110 1-114 249-358 (569)
9 PRK07282 acetolactate synthase 99.8 3.1E-18 6.6E-23 133.6 10.8 106 1-113 246-358 (566)
10 PRK07418 acetolactate synthase 99.8 4.7E-18 1E-22 133.7 11.0 110 1-114 260-376 (616)
11 PRK06725 acetolactate synthase 99.8 7.1E-18 1.5E-22 131.7 11.2 106 1-114 250-362 (570)
12 PRK09107 acetolactate synthase 99.8 1E-17 2.2E-22 131.4 11.5 112 1-113 250-368 (595)
13 PLN02470 acetolactate synthase 99.8 1E-17 2.2E-22 131.0 11.3 111 1-114 249-366 (585)
14 CHL00099 ilvB acetohydroxyacid 99.8 9.3E-18 2E-22 131.3 10.8 113 1-114 253-372 (585)
15 PRK06154 hypothetical protein; 99.7 1.5E-17 3.3E-22 129.7 11.8 110 1-114 250-366 (565)
16 PRK06048 acetolactate synthase 99.7 1.3E-17 2.8E-22 130.0 11.2 106 1-114 243-355 (561)
17 PRK06466 acetolactate synthase 99.7 1.4E-17 3.1E-22 130.0 11.1 112 1-113 242-360 (574)
18 PRK08527 acetolactate synthase 99.7 1.6E-17 3.5E-22 129.5 11.0 108 1-113 239-353 (563)
19 PRK07789 acetolactate synthase 99.7 1.8E-17 3.8E-22 130.4 10.9 113 1-114 267-386 (612)
20 PRK06965 acetolactate synthase 99.7 2.5E-17 5.4E-22 129.0 10.9 112 1-113 257-376 (587)
21 PRK08155 acetolactate synthase 99.7 2.7E-17 5.9E-22 128.2 10.7 106 1-114 247-359 (564)
22 PRK06882 acetolactate synthase 99.7 4.4E-17 9.5E-22 127.2 11.6 113 1-114 242-361 (574)
23 PRK11269 glyoxylate carboligas 99.7 4.4E-17 9.5E-22 127.7 11.4 113 1-114 239-359 (591)
24 PRK07525 sulfoacetaldehyde ace 99.7 3.9E-17 8.6E-22 127.9 11.0 89 1-89 236-333 (588)
25 PRK08273 thiamine pyrophosphat 99.7 4.4E-17 9.5E-22 127.8 10.9 103 1-114 242-351 (597)
26 PRK07710 acetolactate synthase 99.7 7.1E-17 1.5E-21 126.1 11.4 107 1-114 251-364 (571)
27 PRK08978 acetolactate synthase 99.7 7.1E-17 1.5E-21 125.4 11.4 102 1-113 232-340 (548)
28 TIGR00118 acolac_lg acetolacta 99.7 9.2E-17 2E-21 125.1 11.6 109 1-114 237-352 (558)
29 PRK06276 acetolactate synthase 99.7 8.9E-17 1.9E-21 125.8 11.2 109 1-114 239-354 (586)
30 PRK06112 acetolactate synthase 99.7 1.6E-16 3.4E-21 124.2 11.8 87 1-89 249-347 (578)
31 KOG4166|consensus 99.7 3.4E-17 7.5E-22 122.1 7.1 111 1-116 335-461 (675)
32 PRK06456 acetolactate synthase 99.7 2E-16 4.4E-21 123.4 11.5 110 1-114 243-360 (572)
33 PRK08199 thiamine pyrophosphat 99.7 2E-16 4.4E-21 123.1 11.3 88 1-89 240-337 (557)
34 PRK07524 hypothetical protein; 99.7 2.2E-16 4.8E-21 122.4 11.3 89 1-89 235-329 (535)
35 PRK05858 hypothetical protein; 99.7 2.3E-16 5E-21 122.5 11.4 105 1-114 239-343 (542)
36 TIGR03457 sulphoacet_xsc sulfo 99.7 2.4E-16 5.2E-21 123.3 11.0 89 1-89 232-329 (579)
37 PRK08611 pyruvate oxidase; Pro 99.7 4.9E-16 1.1E-20 121.5 11.1 83 1-89 237-326 (576)
38 PRK07064 hypothetical protein; 99.7 7E-16 1.5E-20 119.8 11.2 107 1-114 236-347 (544)
39 PRK08266 hypothetical protein; 99.7 1.1E-15 2.3E-20 118.7 11.3 106 1-114 239-345 (542)
40 PRK06546 pyruvate dehydrogenas 99.7 1.2E-15 2.5E-20 119.4 11.0 82 1-89 235-323 (578)
41 TIGR02720 pyruv_oxi_spxB pyruv 99.7 1.5E-15 3.3E-20 118.7 11.4 86 1-89 234-326 (575)
42 TIGR02418 acolac_catab acetola 99.6 1.6E-15 3.4E-20 117.8 11.2 107 1-112 231-345 (539)
43 PRK09124 pyruvate dehydrogenas 99.6 1.7E-15 3.8E-20 118.3 11.3 83 1-89 235-324 (574)
44 PRK08327 acetolactate synthase 99.6 1.1E-15 2.4E-20 119.4 9.7 86 1-89 256-344 (569)
45 PRK08322 acetolactate synthase 99.6 2.5E-15 5.4E-20 116.8 11.4 87 1-89 232-325 (547)
46 PRK08617 acetolactate synthase 99.6 5.9E-15 1.3E-19 114.9 11.0 107 1-112 237-351 (552)
47 COG3960 Glyoxylate carboligase 99.6 2.4E-15 5.2E-20 109.9 6.3 112 1-113 239-358 (592)
48 PRK06457 pyruvate dehydrogenas 99.5 3.9E-14 8.4E-19 110.3 9.9 78 1-84 229-313 (549)
49 TIGR03393 indolpyr_decarb indo 99.5 4.7E-15 1E-19 115.2 4.6 86 1-89 241-335 (539)
50 TIGR03394 indol_phenyl_DC indo 99.5 8.4E-15 1.8E-19 113.8 5.9 86 1-88 237-330 (535)
51 COG3962 Acetolactate synthase 99.5 2.8E-14 6.2E-19 107.3 8.1 105 1-114 265-377 (617)
52 PLN02573 pyruvate decarboxylas 99.5 3.1E-14 6.7E-19 111.5 6.9 85 1-89 260-352 (578)
53 PRK07092 benzoylformate decarb 99.5 9.4E-14 2E-18 107.8 8.8 87 2-89 244-336 (530)
54 TIGR00173 menD 2-succinyl-5-en 99.5 6.8E-14 1.5E-18 106.2 7.5 84 1-89 246-337 (432)
55 COG3961 Pyruvate decarboxylase 99.5 3.2E-14 7E-19 108.1 4.9 86 1-91 245-338 (557)
56 PRK07449 2-succinyl-5-enolpyru 99.5 9.5E-14 2.1E-18 108.4 6.6 81 1-83 255-343 (568)
57 KOG1184|consensus 99.1 6.1E-11 1.3E-15 90.3 5.2 84 1-89 248-339 (561)
58 PLN02980 2-oxoglutarate decarb 99.1 2.5E-10 5.3E-15 98.2 7.0 102 3-112 568-678 (1655)
59 PRK07586 hypothetical protein; 98.4 1.2E-06 2.6E-11 68.1 8.1 75 1-89 239-316 (514)
60 PRK12474 hypothetical protein; 98.4 1.9E-06 4.2E-11 67.0 8.4 74 1-89 243-320 (518)
61 cd01408 SIRT1 SIRT1: Eukaryoti 98.2 7.9E-07 1.7E-11 62.9 2.9 67 18-84 169-235 (235)
62 PRK14138 NAD-dependent deacety 97.9 1.1E-05 2.5E-10 57.3 4.1 68 18-88 172-241 (244)
63 PRK05333 NAD-dependent deacety 97.8 2.6E-05 5.6E-10 56.7 4.0 70 18-89 208-278 (285)
64 PRK00481 NAD-dependent deacety 97.8 4.1E-05 8.8E-10 54.3 4.7 68 18-88 171-240 (242)
65 PTZ00408 NAD-dependent deacety 97.7 6.1E-05 1.3E-09 53.6 4.4 70 18-89 166-236 (242)
66 cd01409 SIRT4 SIRT4: Eukaryoti 97.6 3.1E-05 6.7E-10 55.6 2.0 62 18-81 198-260 (260)
67 cd01412 SIRT5_Af1_CobB SIRT5_A 97.5 8.4E-05 1.8E-09 52.1 3.1 64 18-84 158-223 (224)
68 PTZ00409 Sir2 (Silent Informat 97.5 0.00012 2.6E-09 52.9 3.6 69 18-89 193-263 (271)
69 COG0846 SIR2 NAD-dependent pro 97.3 0.00017 3.7E-09 51.5 2.2 69 18-89 176-246 (250)
70 cd01410 SIRT7 SIRT7: Eukaryoti 97.1 0.00035 7.5E-09 48.6 2.1 57 18-76 149-206 (206)
71 PTZ00410 NAD-dependent SIR2; P 97.1 0.0014 2.9E-08 49.0 5.3 43 18-60 199-241 (349)
72 PRK00945 acetyl-CoA decarbonyl 97.0 0.0006 1.3E-08 46.1 2.9 54 2-59 78-143 (171)
73 KOG2682|consensus 96.8 0.0029 6.3E-08 44.9 5.0 66 23-89 211-279 (314)
74 cd01411 SIR2H SIR2H: Uncharact 96.5 0.0011 2.4E-08 46.7 1.1 56 18-75 165-220 (225)
75 KOG1905|consensus 96.4 0.0085 1.8E-07 43.8 5.2 69 18-89 210-280 (353)
76 cd01413 SIR2_Af2 SIR2_Af2: Arc 96.4 0.0024 5.3E-08 44.8 2.4 54 18-74 165-220 (222)
77 cd01407 SIR2-fam SIR2 family o 96.3 0.0028 6.2E-08 44.2 2.1 57 18-76 161-218 (218)
78 cd00296 SIR2 SIR2 superfamily 95.5 0.0089 1.9E-07 41.6 1.8 58 18-75 163-221 (222)
79 TIGR00315 cdhB CO dehydrogenas 95.1 0.015 3.3E-07 39.0 2.0 52 2-57 70-133 (162)
80 TIGR00300 conserved hypothetic 93.7 0.12 2.7E-06 39.2 4.3 68 19-89 334-405 (407)
81 KOG2684|consensus 93.5 0.087 1.9E-06 40.1 3.2 65 22-89 278-342 (412)
82 COG1915 Uncharacterized conser 92.1 0.092 2E-06 38.8 1.7 68 19-89 333-404 (415)
83 PRK03363 fixB putative electro 91.8 0.4 8.7E-06 35.5 4.8 60 24-89 252-312 (313)
84 PRK11916 electron transfer fla 91.6 0.41 8.9E-06 35.4 4.6 60 24-89 251-311 (312)
85 PLN00022 electron transfer fla 91.4 0.48 1E-05 35.8 4.8 60 24-89 293-353 (356)
86 COG2025 FixB Electron transfer 88.7 1 2.2E-05 33.4 4.7 60 24-89 251-311 (313)
87 cd02759 MopB_Acetylene-hydrata 82.0 1.2 2.6E-05 34.5 2.4 45 21-65 157-205 (477)
88 cd02761 MopB_FmdB-FwdB The Mop 78.1 6.7 0.00015 29.6 5.3 43 23-65 130-183 (415)
89 cd02766 MopB_3 The MopB_3 CD i 76.5 3.3 7.1E-05 32.5 3.3 45 20-65 153-201 (501)
90 PRK15488 thiosulfate reductase 76.2 5.8 0.00013 32.7 4.8 45 21-65 193-242 (759)
91 cd02750 MopB_Nitrate-R-NarG-li 75.5 3.8 8.2E-05 31.7 3.4 45 20-65 166-214 (461)
92 cd02768 MopB_NADH-Q-OR-NuoG2 M 75.4 2.6 5.7E-05 31.5 2.5 44 20-63 144-191 (386)
93 TIGR03129 one_C_dehyd_B formyl 74.4 7.3 0.00016 29.4 4.7 42 23-64 136-188 (421)
94 COG3383 Uncharacterized anaero 73.9 4.1 8.9E-05 34.0 3.3 68 19-88 415-489 (978)
95 KOG2683|consensus 72.8 1.5 3.3E-05 31.5 0.6 64 18-83 240-304 (305)
96 COG4531 ZnuA ABC-type Zn2+ tra 72.4 4.8 0.0001 29.5 3.0 29 10-38 61-89 (318)
97 cd02765 MopB_4 The MopB_4 CD i 71.5 4.9 0.00011 32.1 3.2 44 21-65 156-203 (567)
98 cd02762 MopB_1 The MopB_1 CD i 70.3 3.5 7.6E-05 32.5 2.2 45 21-65 153-206 (539)
99 cd02752 MopB_Formate-Dh-Na-lik 68.5 2.9 6.3E-05 34.1 1.4 45 21-65 166-214 (649)
100 PRK09129 NADH dehydrogenase su 68.4 3.1 6.7E-05 34.4 1.6 45 20-64 366-413 (776)
101 cd02757 MopB_Arsenate-R This C 67.6 19 0.00041 28.5 5.7 65 21-88 159-232 (523)
102 cd02755 MopB_Thiosulfate-R-lik 65.7 6.5 0.00014 30.4 2.8 45 21-65 153-201 (454)
103 cd02753 MopB_Formate-Dh-H Form 65.3 6.1 0.00013 30.9 2.6 46 20-65 152-200 (512)
104 PRK13532 nitrate reductase cat 65.0 8.9 0.00019 32.1 3.6 44 21-64 203-251 (830)
105 cd02754 MopB_Nitrate-R-NapA-li 64.7 5.3 0.00011 31.6 2.2 45 21-65 154-203 (565)
106 cd02760 MopB_Phenylacetyl-CoA- 64.3 5.6 0.00012 33.1 2.3 45 21-65 170-218 (760)
107 TIGR03479 DMSO_red_II_alp DMSO 64.0 7.7 0.00017 32.9 3.1 45 21-65 221-268 (912)
108 TIGR01591 Fdh-alpha formate de 63.3 7.6 0.00016 31.4 2.9 46 20-65 151-199 (671)
109 cd02756 MopB_Arsenite-Ox Arsen 62.9 11 0.00023 31.1 3.6 44 21-64 220-284 (676)
110 cd02764 MopB_PHLH The MopB_PHL 62.3 11 0.00024 29.6 3.6 45 21-65 193-248 (524)
111 PF02233 PNTB: NAD(P) transhyd 61.0 21 0.00045 28.1 4.7 70 18-88 376-463 (463)
112 COG1165 MenD 2-succinyl-6-hydr 59.3 25 0.00054 28.3 4.9 84 20-114 277-360 (566)
113 PF01596 Methyltransf_3: O-met 59.1 23 0.00051 24.5 4.4 65 22-87 43-116 (205)
114 PRK13793 nicotinamide-nucleoti 58.7 9.8 0.00021 26.4 2.4 25 11-35 15-42 (196)
115 COG1029 FwdB Formylmethanofura 58.6 34 0.00075 26.3 5.3 70 20-90 136-218 (429)
116 cd02769 MopB_DMSOR-BSOR-TMAOR 58.1 15 0.00033 29.6 3.7 44 22-65 168-223 (609)
117 PHA02127 hypothetical protein 57.4 4.8 0.0001 21.4 0.5 32 20-57 25-56 (57)
118 KOG4180|consensus 56.3 16 0.00036 27.5 3.3 41 22-64 103-143 (395)
119 cd00368 Molybdopterin-Binding 56.3 4.6 0.0001 29.8 0.5 44 21-64 153-199 (374)
120 cd02770 MopB_DmsA-EC This CD ( 55.9 6.1 0.00013 31.8 1.2 45 20-64 162-212 (617)
121 cd02767 MopB_ydeP The MopB_yde 54.8 4.5 9.8E-05 32.5 0.3 42 20-61 159-203 (574)
122 COG3925 N-terminal domain of t 54.7 9.2 0.0002 23.4 1.5 31 22-59 38-68 (103)
123 cd01020 TroA_b Metal binding p 54.1 16 0.00036 26.0 3.1 27 10-36 38-64 (264)
124 cd02751 MopB_DMSOR-like The Mo 53.5 16 0.00035 29.3 3.2 42 24-65 169-221 (609)
125 COG2875 CobM Precorrin-4 methy 52.6 14 0.0003 26.5 2.4 21 16-36 20-40 (254)
126 PRK09444 pntB pyridine nucleot 52.2 41 0.00089 26.5 5.0 19 69-87 443-461 (462)
127 cd02774 MopB_Res-Cmplx1_Nad11- 51.4 11 0.00023 28.6 1.8 42 19-60 143-188 (366)
128 TIGR01553 formate-DH-alph form 51.1 9.7 0.00021 32.8 1.7 45 21-65 218-265 (1009)
129 KOG3954|consensus 50.6 20 0.00044 26.3 2.9 60 25-89 275-334 (336)
130 TIGR01973 NuoG NADH-quinone ox 49.3 6.9 0.00015 31.5 0.5 46 20-65 358-407 (603)
131 PRK08493 NADH dehydrogenase su 48.8 19 0.00041 30.4 2.9 70 20-89 366-443 (819)
132 cd02763 MopB_2 The MopB_2 CD i 48.8 19 0.00042 29.7 2.9 44 21-64 152-198 (679)
133 cd01017 AdcA Metal binding pro 48.4 21 0.00047 25.7 2.9 20 17-36 45-64 (282)
134 TIGR01701 Fdhalpha-like oxidor 47.3 7.9 0.00017 32.1 0.6 40 21-60 195-237 (743)
135 cd01018 ZntC Metal binding pro 46.7 25 0.00053 25.2 3.0 23 15-37 42-64 (266)
136 PRK15102 trimethylamine N-oxid 46.5 51 0.0011 27.7 5.1 44 22-65 211-269 (825)
137 TIGR00829 FRU PTS system, fruc 46.5 36 0.00079 20.1 3.2 35 19-59 47-81 (85)
138 PRK09939 putative oxidoreducta 46.2 6.8 0.00015 32.6 0.0 40 21-60 205-247 (759)
139 cd01145 TroA_c Periplasmic bin 45.6 24 0.00052 24.2 2.7 20 17-36 44-63 (203)
140 TIGR02693 arsenite_ox_L arseni 44.5 15 0.00032 30.9 1.7 19 20-38 216-234 (806)
141 PRK09545 znuA high-affinity zi 43.4 30 0.00065 25.5 3.1 20 17-36 66-85 (311)
142 PF00384 Molybdopterin: Molybd 43.4 12 0.00025 28.3 1.0 45 20-64 107-155 (432)
143 PF02882 THF_DHG_CYH_C: Tetrah 43.0 36 0.00077 22.8 3.1 50 19-78 74-123 (160)
144 PF01297 TroA: Periplasmic sol 42.0 31 0.00067 24.3 2.9 21 17-37 40-60 (256)
145 TIGR00509 bisC_fam molybdopter 41.7 14 0.00031 30.6 1.2 44 22-65 165-219 (770)
146 cd02758 MopB_Tetrathionate-Ra 41.4 15 0.00033 30.5 1.4 42 22-64 209-258 (735)
147 TIGR02164 torA trimethylamine- 41.0 64 0.0014 27.1 4.9 44 22-65 208-266 (822)
148 TIGR01706 NAPA periplasmic nit 40.8 31 0.00066 29.0 3.0 45 20-64 202-251 (830)
149 PLN02589 caffeoyl-CoA O-methyl 40.1 37 0.00079 24.3 3.0 63 22-86 77-149 (247)
150 cd01016 TroA Metal binding pro 40.0 30 0.00066 24.9 2.6 23 14-36 40-62 (276)
151 cd01137 PsaA Metal binding pro 40.0 33 0.00071 24.9 2.8 20 17-36 59-78 (287)
152 cd01019 ZnuA Zinc binding prot 39.8 38 0.00082 24.5 3.1 20 17-36 45-64 (286)
153 PRK07860 NADH dehydrogenase su 39.3 13 0.00027 31.2 0.6 43 20-62 372-418 (797)
154 COG1701 Uncharacterized protei 38.5 86 0.0019 22.3 4.5 40 49-89 173-212 (256)
155 PRK14990 anaerobic dimethyl su 38.0 25 0.00054 29.4 2.1 44 21-64 228-278 (814)
156 PF02006 DUF137: Protein of un 37.9 93 0.002 21.2 4.4 40 49-89 109-148 (178)
157 COG0243 BisC Anaerobic dehydro 37.8 29 0.00064 28.7 2.5 42 22-63 197-244 (765)
158 TIGR02166 dmsA_ynfE anaerobic 37.7 9.8 0.00021 31.5 -0.3 43 21-63 211-260 (797)
159 cd08025 RNR_PFL_like_DUF711 Un 35.6 24 0.00053 27.2 1.6 30 6-37 187-216 (400)
160 cd02773 MopB_Res-Cmplx1_Nad11 34.3 30 0.00065 25.9 1.9 42 21-62 142-187 (375)
161 COG1056 NadR Nicotinamide mono 34.2 42 0.00092 22.8 2.4 24 11-34 14-40 (172)
162 KOG1352|consensus 33.1 47 0.001 26.1 2.7 12 23-34 269-280 (618)
163 COG1282 PntB NAD/NADP transhyd 32.2 1.4E+02 0.003 23.2 5.0 19 69-87 444-462 (463)
164 TIGR01580 narG respiratory nit 31.7 46 0.00099 29.6 2.7 43 22-65 243-289 (1235)
165 KOG1439|consensus 31.1 47 0.001 25.9 2.4 34 25-61 5-38 (440)
166 PLN02929 NADH kinase 30.9 76 0.0016 23.6 3.4 37 21-60 61-97 (301)
167 PF05014 Nuc_deoxyrib_tr: Nucl 30.8 42 0.00091 20.5 1.9 44 19-62 56-101 (113)
168 COG2848 Uncharacterized conser 30.4 31 0.00066 26.7 1.3 28 7-36 187-214 (445)
169 cd02771 MopB_NDH-1_NuoG2-N7 Mo 30.2 36 0.00077 26.3 1.7 18 20-37 141-158 (472)
170 PF04016 DUF364: Domain of unk 30.0 41 0.00089 22.0 1.8 68 17-85 55-129 (147)
171 PRK06136 uroporphyrin-III C-me 29.6 39 0.00085 23.7 1.7 22 10-31 14-35 (249)
172 PRK05576 cobalt-precorrin-2 C( 29.2 38 0.00081 23.6 1.6 25 9-33 12-36 (229)
173 KOG1687|consensus 29.1 34 0.00073 22.5 1.2 16 22-37 69-84 (168)
174 TIGR01527 arch_NMN_Atrans nico 28.9 46 0.001 22.3 1.9 25 11-35 10-37 (165)
175 COG2403 Predicted GTPase [Gene 28.7 2.1E+02 0.0045 22.4 5.4 48 6-60 202-253 (449)
176 COG0761 lytB 4-Hydroxy-3-methy 28.7 55 0.0012 24.2 2.4 19 18-36 206-224 (294)
177 PF10087 DUF2325: Uncharacteri 28.4 40 0.00086 20.1 1.4 14 18-31 42-55 (97)
178 PRK00019 rpmE 50S ribosomal pr 28.3 29 0.00063 20.0 0.8 12 5-16 37-48 (72)
179 PRK13761 hypothetical protein; 28.3 1.5E+02 0.0033 21.3 4.4 40 49-89 170-209 (248)
180 cd02166 NMNAT_Archaea Nicotina 28.0 56 0.0012 21.6 2.2 31 4-34 2-36 (163)
181 TIGR01469 cobA_cysG_Cterm urop 27.9 54 0.0012 22.7 2.2 21 10-30 11-31 (236)
182 PF01197 Ribosomal_L31: Riboso 27.8 40 0.00087 19.2 1.3 11 5-15 38-48 (69)
183 TIGR01465 cobM_cbiF precorrin- 27.7 50 0.0011 22.8 2.0 25 9-33 9-33 (229)
184 cd00758 MoCF_BD MoCF_BD: molyb 27.3 54 0.0012 20.7 2.0 15 19-33 53-67 (133)
185 COG2241 CobL Precorrin-6B meth 27.1 59 0.0013 22.8 2.2 24 8-31 9-32 (210)
186 KOG4125|consensus 26.9 37 0.00079 27.0 1.3 23 9-31 482-504 (682)
187 TIGR00216 ispH_lytB (E)-4-hydr 26.8 65 0.0014 23.6 2.5 19 18-36 202-220 (280)
188 cd02772 MopB_NDH-1_NuoG2 MopB_ 26.8 48 0.001 25.1 1.9 43 20-62 148-193 (414)
189 PF00590 TP_methylase: Tetrapy 25.9 68 0.0015 21.5 2.4 23 10-32 11-33 (210)
190 PRK09130 NADH dehydrogenase su 25.8 49 0.0011 27.3 1.9 40 21-60 361-404 (687)
191 cd05212 NAD_bind_m-THF_DH_Cycl 25.4 99 0.0021 20.1 2.9 39 18-60 65-103 (140)
192 TIGR00105 L31 ribosomal protei 25.4 37 0.0008 19.3 0.8 11 6-16 38-48 (68)
193 PF09861 DUF2088: Domain of un 24.9 41 0.00089 23.3 1.1 19 17-35 146-164 (204)
194 PRK05313 hypothetical protein; 24.4 47 0.001 26.1 1.5 30 6-37 193-222 (452)
195 PF02401 LYTB: LytB protein; 24.1 69 0.0015 23.5 2.2 19 18-36 203-221 (281)
196 PRK10474 putative PTS system f 23.8 64 0.0014 19.1 1.7 36 19-60 33-68 (88)
197 CHL00136 rpl31 ribosomal prote 23.8 40 0.00086 19.3 0.7 12 5-16 37-48 (68)
198 PF00994 MoCF_biosynth: Probab 23.6 74 0.0016 20.3 2.1 15 19-33 51-65 (144)
199 PRK01397 50S ribosomal protein 23.4 43 0.00093 19.7 0.9 12 5-16 36-47 (78)
200 TIGR01467 cobI_cbiL precorrin- 23.4 62 0.0013 22.4 1.8 25 9-33 11-35 (230)
201 PRK05765 precorrin-3B C17-meth 23.2 73 0.0016 22.6 2.2 24 9-32 12-35 (246)
202 PF11349 DUF3151: Protein of u 23.0 73 0.0016 20.6 1.9 16 1-16 76-91 (129)
203 cd05569 PTS_IIB_fructose PTS_I 22.7 73 0.0016 19.1 1.8 34 20-60 49-82 (96)
204 PRK04160 diphthine synthase; P 22.6 91 0.002 22.2 2.6 22 9-30 10-31 (258)
205 PRK01045 ispH 4-hydroxy-3-meth 22.5 88 0.0019 23.2 2.5 19 18-36 204-222 (298)
206 PF00766 ETF_alpha: Electron t 22.5 56 0.0012 19.6 1.2 15 22-36 4-18 (86)
207 PF02698 DUF218: DUF218 domain 22.4 57 0.0012 20.9 1.4 9 24-32 1-9 (155)
208 PF13399 LytR_C: LytR cell env 22.2 70 0.0015 18.6 1.7 15 22-36 75-89 (90)
209 PRK05787 cobalt-precorrin-6Y C 21.9 79 0.0017 21.4 2.1 21 10-30 11-31 (210)
210 TIGR02467 CbiE precorrin-6y C5 21.6 93 0.002 21.1 2.4 22 9-30 7-28 (204)
211 TIGR01466 cobJ_cbiH precorrin- 21.4 69 0.0015 22.3 1.8 23 10-32 10-32 (239)
212 PRK12360 4-hydroxy-3-methylbut 21.2 96 0.0021 22.8 2.5 19 18-36 203-221 (281)
213 PRK05991 precorrin-3B C17-meth 20.9 89 0.0019 22.1 2.2 23 9-31 13-35 (250)
214 TIGR00177 molyb_syn molybdenum 20.9 73 0.0016 20.5 1.7 16 19-34 61-76 (144)
215 PRK15478 cbiH cobalt-precorrin 20.7 77 0.0017 22.5 1.9 23 10-32 11-33 (241)
216 PRK01678 rpmE2 50S ribosomal p 20.4 50 0.0011 19.8 0.7 12 5-16 50-61 (87)
217 PRK04761 ppnK inorganic polyph 20.4 69 0.0015 23.0 1.6 37 21-59 22-58 (246)
218 smart00852 MoCF_biosynth Proba 20.3 90 0.002 19.6 2.0 15 19-33 52-66 (135)
No 1
>KOG1185|consensus
Probab=99.86 E-value=4.7e-21 Score=143.68 Aligned_cols=116 Identities=50% Similarity=0.831 Sum_probs=103.1
Q ss_pred CCCCCCCCCCccccChHHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhc-cccceEEecCHHH
Q psy14417 1 MGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNS-VQAAVAIQSDVRL 79 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~-~~~~~~i~~d~~~ 79 (120)
||||++|.+||++++.....+|+.||+||++|++++|...+|..+.|.++.++||||.++++++.+ ..++++|.||++.
T Consensus 253 MgKGll~d~hPl~v~~aRS~ALk~ADvvll~GarlnwiLhfG~~Pk~~kd~KfIqvd~n~Eel~~n~~k~~v~i~gDig~ 332 (571)
T KOG1185|consen 253 MGKGLLPDNHPLNVSSARSLALKKADVVLLAGARLNWILHFGLPPKWSKDVKFIQVDINPEELGNNFVKPDVAIQGDIGL 332 (571)
T ss_pred ccccCCCCCCchhhhHHHHHHHhhCCEEEEecceeeEEEecCCCCccCCCceEEEEeCCHHHHhcccCCCCceeeecHHH
Confidence 899999999999999888999999999999999999998888888898999999999999999998 6799999999999
Q ss_pred HHHHHHHHhhhcccCCccCCCchHHHHHHHHHhhhhhhh
Q psy14417 80 TVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQFK 118 (120)
Q Consensus 80 ~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 118 (120)
++..|.+.+. ...|......+|.+++++..+++++.+
T Consensus 333 ~~~~L~e~l~--~~~~~~~~s~~w~k~Lrek~~~ne~~~ 369 (571)
T KOG1185|consen 333 FVLQLVEELQ--DQPWTWGPSTDWVKELREKDKQNEAAV 369 (571)
T ss_pred HHHHHHHHhc--CCCcccCCchhHHHHHHHHHHhhHHHH
Confidence 9999999997 322344455689999999887776654
No 2
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=99.84 E-value=6.5e-21 Score=124.09 Aligned_cols=84 Identities=39% Similarity=0.658 Sum_probs=73.9
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|||+||++||+|+|. .+.+++++||+||++|++++++.+++.+..+.+++++|||+.|+.++++++++++.|
T Consensus 47 ~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~~~~~~~~~i 126 (137)
T PF00205_consen 47 MGKGVIPEDHPLFLGYLGLFGSPAANEALEQADLVLAIGTRLSDFNTYGFSPAFNPDAKIIQIDPDPAEIGKNYPPDVAI 126 (137)
T ss_dssp GGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSEEEEESSSSSTTTTTTTTGCSTTTSEEEEEESSGGGTTSSSEESEEE
T ss_pred ccccccCCCCchhcccCCccCCHHHHHHhcCCCEEEEECCCCccccccccccccCCCCEEEEEECCHHHhCCCCCCCEEE
Confidence 5899999999999984 467899999999999999998756664455666669999999999999999999999
Q ss_pred ecCHHHHHHHH
Q psy14417 74 QSDVRLTVQQL 84 (120)
Q Consensus 74 ~~d~~~~l~~L 84 (120)
+||++.+|++|
T Consensus 127 ~~d~~~~l~~L 137 (137)
T PF00205_consen 127 VGDIKAFLRAL 137 (137)
T ss_dssp ESHHHHHHHHH
T ss_pred EECHHHHhhCC
Confidence 99999999886
No 3
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.79 E-value=7.7e-19 Score=136.37 Aligned_cols=104 Identities=32% Similarity=0.512 Sum_probs=86.1
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|||++|++||+|+|. .++.++++|||||+||++|+++ .++ +..|.+..++||||+|+.++++++++++.+
T Consensus 236 ~gkg~~p~~hp~~lG~~g~~g~~~a~~~~~~aDlll~vG~rf~~~-~~~-~~~f~~~~~ii~iDidp~ei~k~~~~~~~i 313 (550)
T COG0028 236 MGKGAVPEDHPLSLGMLGMHGTKAANEALEEADLLLAVGARFDDR-VTG-YSGFAPPAAIIHIDIDPAEIGKNYPVDVPI 313 (550)
T ss_pred CcCccCCCCCccccccccccccHHHHHHhhcCCEEEEecCCCccc-ccc-hhhhCCcCCEEEEeCChHHhCCCCCCCeeE
Confidence 6999999999999996 3678899999999999999997 444 444433333999999999999999999999
Q ss_pred ecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhhh
Q psy14417 74 QSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 114 (120)
Q Consensus 74 ~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 114 (120)
+||++.+|++|++.+. . . ...|..++.++++++
T Consensus 314 ~gD~~~~l~~L~~~l~--~-----~-~~~~~~~~~~~~~~~ 346 (550)
T COG0028 314 VGDAKATLEALLEELK--P-----E-RAAWLEELLEARAAY 346 (550)
T ss_pred eccHHHHHHHHHHhhh--h-----c-chHHHHHHHHHHHhh
Confidence 9999999999998886 2 1 466888887766554
No 4
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=99.79 E-value=8.8e-19 Score=136.26 Aligned_cols=110 Identities=35% Similarity=0.640 Sum_probs=89.2
Q ss_pred CCCCCCCCCCccccChHHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEEecCHHHH
Q psy14417 1 MGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLT 80 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~~ 80 (120)
+|||+||++||+|+|...++++++|||||++|++++++.+++....+.+++++||||.|+.+++++++.++.++||++.+
T Consensus 242 ~gkg~~p~~hp~~~g~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~ 321 (554)
T TIGR03254 242 MAKGLLPDTHPQSAAAARSFALAEADVVMLVGARLNWLLSHGKGKLWGEDAKFIQVDIEPTEMDSNRPIAAPVVGDIGSV 321 (554)
T ss_pred CcceeCCCCCchhhhHHHHHHHhcCCEEEEECCCCchhhccCchhhcCCCCcEEEcCCCHHHhCCCcCCceEEecCHHHH
Confidence 68999999999999988888999999999999999887444433345567899999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCCccCCCchHHHHHHHHHhhh
Q psy14417 81 VQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 114 (120)
Q Consensus 81 l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 114 (120)
|++|++.+.... ......|.+++..+++.+
T Consensus 322 l~~L~~~l~~~~----~~~~~~~~~~~~~~~~~~ 351 (554)
T TIGR03254 322 VQALLSAAKNGG----VKPPADWRNAIKTKSEKN 351 (554)
T ss_pred HHHHHHHhhhcc----ccchHHHHHHHHHHHHhc
Confidence 999999885211 122356877776665543
No 5
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.78 E-value=2e-18 Score=134.73 Aligned_cols=112 Identities=21% Similarity=0.450 Sum_probs=87.5
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|||+||++||+|+|+ .+++++++|||||+||++++++ .++.+..+.++.++||||.|+.++++++++++.|
T Consensus 242 ~gkg~~~~~hp~~~G~~G~~~~~~~~~~~~~aD~vl~vG~~~~~~-~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i 320 (572)
T PRK08979 242 MGLGAFPGTHKNSLGMLGMHGRYEANMAMHNADLIFGIGVRFDDR-TTNNLEKYCPNATILHIDIDPSSISKTVRVDIPI 320 (572)
T ss_pred cccccCCCCCcccccCCccCCCHHHHHHHHhCCEEEEEcCCCCcc-ccCchhhcCCCCeEEEEECCHHHhCCccCCceEE
Confidence 5899999999999996 3568899999999999999887 4444444556789999999999999999999999
Q ss_pred ecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhh
Q psy14417 74 QSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQT 113 (120)
Q Consensus 74 ~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~ 113 (120)
+||++.+|++|++.+.++...........|.+++..++..
T Consensus 321 ~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (572)
T PRK08979 321 VGSADKVLDSMLALLDESGETNDEAAIASWWNEIEVWRSR 360 (572)
T ss_pred ecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHh
Confidence 9999999999998775211000001224688777766554
No 6
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.78 E-value=2.1e-18 Score=134.71 Aligned_cols=112 Identities=21% Similarity=0.477 Sum_probs=87.5
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|||+||++||+|+|+ .+++++++|||||+||++++++ .++.+..+.++.++||||.|+.++++++++++.+
T Consensus 242 ~gkg~~p~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~vG~~~~~~-~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i 320 (574)
T PRK07979 242 MGLGAFPATHRQSLGMLGMHGTYEANMTMHNADVIFAVGVRFDDR-TTNNLAKYCPNATVLHIDIDPTSISKTVTADIPI 320 (574)
T ss_pred ccCCCCCCCCcccccCCcCCCCHHHHHHHHhCCEEEEeCCCCccc-ccCChhhcCCCCeEEEEECCHHHhCCcccCCeEE
Confidence 5899999999999996 3678999999999999999887 4444444556779999999999999999999999
Q ss_pred ecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhh
Q psy14417 74 QSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQT 113 (120)
Q Consensus 74 ~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~ 113 (120)
+||++.+|++|++.+.++...........|.+.+++++.+
T Consensus 321 ~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (574)
T PRK07979 321 VGDARQVLEQMLELLSQESAHQPLDEIRDWWQQIEQWRAR 360 (574)
T ss_pred ecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHh
Confidence 9999999999998775211100011235687777766543
No 7
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=99.77 E-value=2.9e-18 Score=134.27 Aligned_cols=112 Identities=21% Similarity=0.357 Sum_probs=86.1
Q ss_pred CCCCCCCCCCccccCh--------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceE
Q psy14417 1 MGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVA 72 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~--------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~ 72 (120)
+|||+||++||+|+|+ .+++++++|||||++|++++++ .++.+..+.++.++||||.|+.++++++.+++.
T Consensus 238 ~gkg~~p~~hpl~~G~~g~~~~~~~a~~~l~~aD~iL~lG~~l~~~-~t~~~~~~~~~~~~I~id~d~~~i~~~~~~~~~ 316 (588)
T TIGR01504 238 MGWGCIPDDHELMAGMVGLQTSHRYGNATLLESDFVFGIGNRWANR-HTGSVDVYTEGRKFVHVDIEPTQIGRVFAPDLG 316 (588)
T ss_pred ccCCCCCCCChhhCcCCCCCCCcHHHHHHHHhCCEEEEECCCCCcc-ccCcccccCCCCeEEEeeCCHHHhcCcCCCCeE
Confidence 5899999999999995 3457899999999999999886 444444456678899999999999999999999
Q ss_pred EecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhh
Q psy14417 73 IQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQT 113 (120)
Q Consensus 73 i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~ 113 (120)
|+||++.+|++|.+.+.+............|.+.+.+++.+
T Consensus 317 i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (588)
T TIGR01504 317 IVSDAKAALKLLVEVAQELKKAGRLPDRSEWAADCQQRKRT 357 (588)
T ss_pred EEeCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHh
Confidence 99999999999998764211000001234677776665443
No 8
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.77 E-value=2.5e-18 Score=134.12 Aligned_cols=110 Identities=37% Similarity=0.672 Sum_probs=88.8
Q ss_pred CCCCCCCCCCccccChHHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEEecCHHHH
Q psy14417 1 MGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLT 80 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~~ 80 (120)
+|||+||++||+|+|...+.++++|||||+||++++++.+++....+.++.++||||.|+..++++++.++.+.||++.+
T Consensus 249 ~gkg~~~e~hpl~~G~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~ii~Id~d~~~~~~~~~~~~~i~~D~~~~ 328 (569)
T PRK09259 249 MAKGLLPDTHPQSAAAARSLALANADVVLLVGARLNWLLSHGKGKTWGADKKFIQIDIEPQEIDSNRPIAAPVVGDIGSV 328 (569)
T ss_pred cccccCCCCChhhhhHHHHHHHhcCCEEEEeCCCCchhcccCchhccCCCCcEEEecCChHHhcCCccCceeEecCHHHH
Confidence 68999999999999998888899999999999999876433332345567899999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCCccCCCchHHHHHHHHHhhh
Q psy14417 81 VQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 114 (120)
Q Consensus 81 l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 114 (120)
|++|++.+.... ......|.+++..+++.+
T Consensus 329 L~~L~~~l~~~~----~~~~~~w~~~~~~~~~~~ 358 (569)
T PRK09259 329 MQALLAGLKQNT----FKAPAEWLDALAERKEKN 358 (569)
T ss_pred HHHHHHHhhhcc----ccchHHHHHHHHHHHHhC
Confidence 999998885211 123456887777665544
No 9
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.77 E-value=3.1e-18 Score=133.60 Aligned_cols=106 Identities=20% Similarity=0.419 Sum_probs=86.1
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|||+||++||+|+|+ .+.+++++|||||+||+++.++ .++.+..+.++.++||||.|+.+++++++.++.+
T Consensus 246 ~gkg~ip~~hpl~~G~~G~~~~~~~~~~~~~aD~vl~lG~~l~~~-~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i 324 (566)
T PRK07282 246 LGQGTIATSHPLFLGMGGMHGSYAANIAMTEADFMINIGSRFDDR-LTGNPKTFAKNAKVAHIDIDPAEIGKIIKTDIPV 324 (566)
T ss_pred ccCCCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEECCCCCcc-ccCChhhcCCCCeEEEEECCHHHhCCCCCCCeEE
Confidence 5899999999999985 3567899999999999999886 4454444556788999999999999999999999
Q ss_pred ecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhh
Q psy14417 74 QSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQT 113 (120)
Q Consensus 74 ~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~ 113 (120)
+||+..+|++|++.+. .. ....+|.+.+.+++.+
T Consensus 325 ~~D~~~~L~~L~~~l~--~~----~~~~~~~~~~~~~~~~ 358 (566)
T PRK07282 325 VGDAKKALQMLLAEPT--VH----NNTEKWIEKVTKDKNR 358 (566)
T ss_pred ecCHHHHHHHHHHhhc--cc----CChHHHHHHHHHHHHh
Confidence 9999999999998775 21 1235687777655443
No 10
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.76 E-value=4.7e-18 Score=133.66 Aligned_cols=110 Identities=26% Similarity=0.415 Sum_probs=88.7
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|||+||++||+|+|. .+++++++|||||+||+++++. .++.+..+.++.++||||.|+..+++++.+++.|
T Consensus 260 ~gkg~~p~~hpl~~G~~G~~g~~~~~~~l~~aDlvL~vG~~~~~~-~~~~~~~~~~~~~~i~id~d~~~ig~~~~~~~~i 338 (616)
T PRK07418 260 MGKGAFDEHHPLSVGMLGMHGTAYANFAVTECDLLIAVGARFDDR-VTGKLDEFASRAKVIHIDIDPAEVGKNRRPDVPI 338 (616)
T ss_pred CCCcCCCCCCcccccCCCCCCCHHHHHHHHhCCEEEEEcCCCCcc-ccCChhhcCCCCeEEEEeCCHHHhCCccCCCeEE
Confidence 5899999999999995 3678999999999999999876 4444444566789999999999999999999999
Q ss_pred ecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhhh
Q psy14417 74 QSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 114 (120)
Q Consensus 74 ~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 114 (120)
+||++.+|++|++.+..+. .......|.+.+++|++.+
T Consensus 339 ~~D~~~~l~~L~~~l~~~~---~~~~~~~~~~~~~~~~~~~ 376 (616)
T PRK07418 339 VGDVRKVLVKLLERSLEPT---TPPRTQAWLERINRWKQDY 376 (616)
T ss_pred ecCHHHHHHHHHHhhhccc---cccchHHHHHHHHHHHHhC
Confidence 9999999999998875211 0112356888888776654
No 11
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.76 E-value=7.1e-18 Score=131.68 Aligned_cols=106 Identities=26% Similarity=0.442 Sum_probs=86.6
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|||+||++||+|+|+ .+.+++++|||||+||++++++ +++.+..+.++.++||||.|+..++++++.++.+
T Consensus 250 ~~kg~~p~~hp~~~G~~G~~~~~~~~~~l~~aDlil~vG~~~~~~-~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i 328 (570)
T PRK06725 250 MGLGAYPPGDPLFLGMLGMHGTYAANMAVTECDLLLALGVRFDDR-VTGKLELFSPHSKKVHIDIDPSEFHKNVAVEYPV 328 (570)
T ss_pred ccCcCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEeCCCCCcc-ccCcccccCCCCeEEEEeCCHHHhCCCCCCCeEE
Confidence 5899999999999996 3568999999999999999887 4554444556778999999999999999999999
Q ss_pred ecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhhh
Q psy14417 74 QSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 114 (120)
Q Consensus 74 ~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 114 (120)
+||+..+|++|++.+. . .....|.+.++.+++++
T Consensus 329 ~gD~~~~l~~L~~~l~--~-----~~~~~~~~~~~~~~~~~ 362 (570)
T PRK06725 329 VGDVKKALHMLLHMSI--H-----TQTDEWLQKVKTWKEEY 362 (570)
T ss_pred ecCHHHHHHHHHHhcc--c-----cCcHHHHHHHHHHHHhC
Confidence 9999999999988775 2 12345777776665554
No 12
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.75 E-value=1e-17 Score=131.39 Aligned_cols=112 Identities=23% Similarity=0.418 Sum_probs=86.4
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|||+||++||+|+|+ .+.+++++|||||+||+++++. .++.+..+.++.++||||.|+..++++++.++.+
T Consensus 250 ~gkg~~p~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~~~~~-~~~~~~~~~~~~~~I~id~d~~~i~~~~~~~~~i 328 (595)
T PRK09107 250 MGLGAYPASGKNWLGMLGMHGTYEANMAMHDCDVMLCVGARFDDR-ITGRLDAFSPNSKKIHIDIDPSSINKNVRVDVPI 328 (595)
T ss_pred cccccCCCCCCcccCCCCCCccHHHHHHHHhCCEEEEECCCCCcc-ccCchhhcCCCCeEEEEECCHHHhCCCCCCCeEE
Confidence 5899999999999996 3467899999999999999876 4554444556788999999999999999999999
Q ss_pred ecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhh
Q psy14417 74 QSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQT 113 (120)
Q Consensus 74 ~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~ 113 (120)
+||++.+|++|++.+.++...........|.+.+.++++.
T Consensus 329 ~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (595)
T PRK09107 329 IGDVGHVLEDMLRLWKARGKKPDKEALADWWGQIARWRAR 368 (595)
T ss_pred ecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHh
Confidence 9999999999998775211000001134677666665543
No 13
>PLN02470 acetolactate synthase
Probab=99.75 E-value=1e-17 Score=131.05 Aligned_cols=111 Identities=26% Similarity=0.430 Sum_probs=87.4
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|||+||++||+|+|. .++.++++|||||+||++++++ .++.+..+.+..++||||.|+.+++++++.++.|
T Consensus 249 ~gkg~~~~~hpl~~G~~G~~~~~~~~~~~~~aDlvl~lG~~l~~~-~~~~~~~~~~~~~~I~id~d~~~i~~~~~~~~~i 327 (585)
T PLN02470 249 MGLGAFPASDELSLQMLGMHGTVYANYAVDSADLLLAFGVRFDDR-VTGKLEAFASRASIVHIDIDPAEIGKNKQPHVSV 327 (585)
T ss_pred CccccCCCCCcccccCCCCCCCHHHHHHHHhCCEEEEECCCCccc-ccCChhhcCCCCeEEEEECCHHHhCCCcCCCeEE
Confidence 6899999999999985 3468899999999999999886 4554444556778999999999999999999999
Q ss_pred ecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhhh
Q psy14417 74 QSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 114 (120)
Q Consensus 74 ~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 114 (120)
++|++.+|+.|++.+.++.. .......|.+.+.++++++
T Consensus 328 ~~D~~~~l~~L~~~l~~~~~--~~~~~~~~~~~~~~~~~~~ 366 (585)
T PLN02470 328 CADVKLALQGLNKLLEERKA--KRPDFSAWRAELDEQKEKF 366 (585)
T ss_pred ecCHHHHHHHHHHhhhhccc--cccchHHHHHHHHHHHHhC
Confidence 99999999999988762110 0012356877776666544
No 14
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.75 E-value=9.3e-18 Score=131.34 Aligned_cols=113 Identities=27% Similarity=0.484 Sum_probs=86.9
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|||+||++||+|+|+ .++.++++|||||++|++++++ .++.+..+.++.++||||.|+.++++++++++.+
T Consensus 253 ~~kg~~~~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~~~~~-~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i 331 (585)
T CHL00099 253 MGKGIFDEDHPLCLGMLGMHGTAYANFAVSECDLLIALGARFDDR-VTGKLDEFACNAQVIHIDIDPAEIGKNRIPQVAI 331 (585)
T ss_pred ccCcCCCCCCCcccCCCCCCCCHHHHHHHHhCCEEEEECCCCccc-ccCCHhHcCCCCeEEEEECCHHHhCCCCCCCeEE
Confidence 5899999999999995 3567889999999999999886 3443444556788999999999999999999999
Q ss_pred ecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhhh
Q psy14417 74 QSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 114 (120)
Q Consensus 74 ~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 114 (120)
++|++.+|++|++.+.++...........|.+.++.+++.+
T Consensus 332 ~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (585)
T CHL00099 332 VGDVKKVLQELLELLKNSPNLLESEQTQAWRERINRWRKEY 372 (585)
T ss_pred ecCHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHhC
Confidence 99999999999987762110000011246877777665543
No 15
>PRK06154 hypothetical protein; Provisional
Probab=99.75 E-value=1.5e-17 Score=129.69 Aligned_cols=110 Identities=19% Similarity=0.292 Sum_probs=85.5
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|||+||++||+|+|+ .+++++++|||||+||++++++ .++ + .++++.++||||.|+.++++++++++.|
T Consensus 250 ~gkg~~~~~hpl~~G~~g~~~~~~~~~~~~~aDlvL~lG~~l~~~-~~~-~-~~~~~~~vI~id~d~~~~~~~~~~~~~i 326 (565)
T PRK06154 250 NGKSAFPEDHPLALGSGGRARPATVAHFLREADVLFGIGCSLTRS-YYG-L-PMPEGKTIIHSTLDDADLNKDYPIDHGL 326 (565)
T ss_pred CcccCCCCCCccccCCCCCCCcHHHHHHHHhCCEEEEECCCCccc-ccC-c-cCCCCCeEEEEECCHHHhccccCCCeeE
Confidence 5899999999999985 3568899999999999999875 333 2 2556789999999999999999999999
Q ss_pred ecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhhh
Q psy14417 74 QSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 114 (120)
Q Consensus 74 ~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 114 (120)
+||++.+|++|++.+.++... ......+|.+++..+++++
T Consensus 327 ~~D~~~~L~~L~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~ 366 (565)
T PRK06154 327 VGDAALVLKQMIEELRRRVGP-DRGRAQQVAAEIEAVRAAW 366 (565)
T ss_pred EcCHHHHHHHHHHHhhhcccc-cccchHHHHHHHHHHHHHh
Confidence 999999999999988622100 0011346877776655543
No 16
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.75 E-value=1.3e-17 Score=129.96 Aligned_cols=106 Identities=25% Similarity=0.482 Sum_probs=86.2
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|||+||++||+|+|+ .+++++++|||||+||+++++. .++.+..+.++.++||||.|+.+++++++.++.+
T Consensus 243 ~~kg~~~~~hpl~~G~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~-~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i 321 (561)
T PRK06048 243 MGIGAIPTEHPLSLGMLGMHGTKYANYAIQESDLIIAVGARFDDR-VTGKLASFAPNAKIIHIDIDPAEISKNVKVDVPI 321 (561)
T ss_pred ccCccCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEECCCCCcc-ccCChhhcCCCCeEEEEECCHHHhCCCCCCCeEE
Confidence 5899999999999996 3577899999999999999876 3444444556788999999999999999999999
Q ss_pred ecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhhh
Q psy14417 74 QSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 114 (120)
Q Consensus 74 ~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 114 (120)
+||++.+|+.|++.+. . .....|.+.+..+++++
T Consensus 322 ~~D~~~~l~~L~~~l~--~-----~~~~~~~~~~~~~~~~~ 355 (561)
T PRK06048 322 VGDAKQVLKSLIKYVQ--Y-----CDRKEWLDKINQWKKEY 355 (561)
T ss_pred EeCHHHHHHHHHHhcc--c-----cCcHHHHHHHHHHHHhC
Confidence 9999999999998775 2 12345777766665543
No 17
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.75 E-value=1.4e-17 Score=130.00 Aligned_cols=112 Identities=21% Similarity=0.410 Sum_probs=86.4
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|||+||++||+|+|+ ...+++++|||||++|++++++ .++.+..+.++.++||||.|+.++++++++++.+
T Consensus 242 ~~kg~~~~~hp~~~G~~G~~~~~~~~~~l~~aD~il~vG~~~~~~-~~~~~~~~~~~~~vi~id~d~~~i~~~~~~~~~i 320 (574)
T PRK06466 242 MGLGGFPGTDRQFLGMLGMHGTYEANMAMHHADVILAVGARFDDR-VTNGPAKFCPNAKIIHIDIDPASISKTIKADIPI 320 (574)
T ss_pred ccCCCCCCCChhhcCCCccccCHHHHHHHHhCCEEEEECCCCCcc-ccCchhhcCCCCeEEEEECCHHHhCCccCCCeEE
Confidence 5899999999999985 3567899999999999999886 4444444556678999999999999999999999
Q ss_pred ecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhh
Q psy14417 74 QSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQT 113 (120)
Q Consensus 74 ~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~ 113 (120)
+||++.+|+.|++.+.+............|.+.+..+++.
T Consensus 321 ~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (574)
T PRK06466 321 VGPVESVLTEMLAILKEIGEKPDKEALAAWWKQIDEWRGR 360 (574)
T ss_pred ecCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHh
Confidence 9999999999998775211000011234677777666544
No 18
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.74 E-value=1.6e-17 Score=129.48 Aligned_cols=108 Identities=25% Similarity=0.409 Sum_probs=87.4
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|||+||++||+|+|+ ..++++++|||||+||+++++. .++.+..+.+..++||||.|+.+++++++.++.+
T Consensus 239 ~~kg~~~~~hpl~~G~~g~~~~~~~~~~l~~aD~vl~lG~~l~~~-~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i 317 (563)
T PRK08527 239 MARGVLRSDDPLLLGMLGMHGSYAANMAMSECDLLISLGARFDDR-VTGKLSEFAKHAKIIHVDIDPSSISKIVNADYPI 317 (563)
T ss_pred ccCCCCCCCChhhcCCCcccCCHHHHHHHHhCCEEEEeCCCCCcc-ccCChhhcCCCCeEEEEECCHHHhCCCCCCCeEE
Confidence 5899999999999986 3578999999999999999886 4554544566788999999999999999999999
Q ss_pred ecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhh
Q psy14417 74 QSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQT 113 (120)
Q Consensus 74 ~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~ 113 (120)
+||++.+|++|++.+..+. ......|.+.+.++++.
T Consensus 318 ~~D~~~~l~~L~~~l~~~~----~~~~~~~~~~~~~~~~~ 353 (563)
T PRK08527 318 VGDLKNVLKEMLEELKEEN----PTTYKEWREILKRYNEL 353 (563)
T ss_pred ecCHHHHHHHHHHhhhhcc----ccchHHHHHHHHHHHHh
Confidence 9999999999998875210 11235688777766554
No 19
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.74 E-value=1.8e-17 Score=130.36 Aligned_cols=113 Identities=29% Similarity=0.480 Sum_probs=87.6
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|||+||++||+|+|+ .+.+++++|||||++|+++++. .++.+..+.++.++||||.|+.+++++++.++.|
T Consensus 267 ~~kg~~p~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~l~~~-~t~~~~~~~~~~~~i~Id~d~~~i~~~~~~~~~i 345 (612)
T PRK07789 267 MARGAFPDSHPQHLGMPGMHGTVAAVAALQRSDLLIALGARFDDR-VTGKLDSFAPDAKVIHADIDPAEIGKNRHADVPI 345 (612)
T ss_pred cccccCCCCChhhccCCcccCcHHHHHHHHhCCEEEEECCCCCcc-ccCChhhcCCCCcEEEEECCHHHhCCCCCCCeEE
Confidence 5899999999999986 3568899999999999999876 4554444556778999999999999999999999
Q ss_pred ecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhhh
Q psy14417 74 QSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 114 (120)
Q Consensus 74 ~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 114 (120)
+||++.+|++|++.+..............|.+.+.++++++
T Consensus 346 ~gD~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 386 (612)
T PRK07789 346 VGDVKEVIAELIAALRAEHAAGGKPDLTAWWAYLDGWRETY 386 (612)
T ss_pred ecCHHHHHHHHHHhhhhcccccccccHHHHHHHHHHHHHhC
Confidence 99999999999988752110000012356887777665543
No 20
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.73 E-value=2.5e-17 Score=128.98 Aligned_cols=112 Identities=22% Similarity=0.450 Sum_probs=85.1
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCC-CCCeEEEEcCChhhhhhccccceE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFK-SNVKIIQVDLNAEELHNSVQAAVA 72 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~-~~~~vi~Id~d~~~i~~~~~~~~~ 72 (120)
+|||+||++||+|+|+ .+++++++|||||+||++++++ .++++..+. ++.++||||.|+.+++++++.++.
T Consensus 257 ~gkg~~~~~hpl~~G~~G~~~~~~a~~~~~~aDlvl~lG~~~~~~-~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~ 335 (587)
T PRK06965 257 MGLGAYPASDKKFLGMLGMHGTYEANMAMQHCDVLIAIGARFDDR-VIGNPAHFASRPRKIIHIDIDPSSISKRVKVDIP 335 (587)
T ss_pred ccCCCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEECCCCccc-ccCChhhcCCCCceEEEEeCCHHHhCCcCCCCeE
Confidence 5899999999999996 3567899999999999999876 344333343 347899999999999999999999
Q ss_pred EecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhh
Q psy14417 73 IQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQT 113 (120)
Q Consensus 73 i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~ 113 (120)
++||++.+|++|++.+.++...........|.+.+.++++.
T Consensus 336 i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (587)
T PRK06965 336 IVGDVKEVLKELIEQLQTAEHGPDADALAQWWKQIEGWRSR 376 (587)
T ss_pred EecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHh
Confidence 99999999999998775211000001234677777666543
No 21
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.73 E-value=2.7e-17 Score=128.16 Aligned_cols=106 Identities=34% Similarity=0.496 Sum_probs=86.2
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|||+||++||+|+|. ..+.++++|||||++|+++++. .++.+..+.+..++||||.|+..+++.++.++.+
T Consensus 247 ~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~~~~-~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i 325 (564)
T PRK08155 247 MALGMLPKAHPLSLGMLGMHGARSTNYILQEADLLIVLGARFDDR-AIGKTEQFCPNAKIIHVDIDRAELGKIKQPHVAI 325 (564)
T ss_pred cccccCCCCChhhccCCCCCCCHHHHHHHHhCCEEEEECCCCCcc-ccCCHhhcCCCCeEEEEECCHHHhCCCcCCCeEE
Confidence 5899999999999996 3567899999999999999886 3444444556778999999999999999999999
Q ss_pred ecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhhh
Q psy14417 74 QSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 114 (120)
Q Consensus 74 ~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 114 (120)
.+|++.+|+.|++.+. . .....|.+.+..+++.+
T Consensus 326 ~~D~~~~l~~L~~~l~--~-----~~~~~~~~~~~~~~~~~ 359 (564)
T PRK08155 326 QADVDDVLAQLLPLVE--A-----QPRAEWHQLVADLQREF 359 (564)
T ss_pred ecCHHHHHHHHHHhhc--c-----cchHHHHHHHHHHHHhC
Confidence 9999999999988775 2 12356877776665544
No 22
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.73 E-value=4.4e-17 Score=127.23 Aligned_cols=113 Identities=19% Similarity=0.411 Sum_probs=87.5
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|||+||++||+|+|+ .+.+++++|||||+||++++++ .++.+..+.++.++||||.|+..++++++.++.+
T Consensus 242 ~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~lG~~~~~~-~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i 320 (574)
T PRK06882 242 MGLGAYPSTDKQFLGMLGMHGTYEANNAMHESDLILGIGVRFDDR-TTNNLAKYCPNAKVIHIDIDPTSISKNVPAYIPI 320 (574)
T ss_pred ccCcCCCCCChhhcCCCcccccHHHHHHHHhCCEEEEECCCCCcc-ccCchhhcCCCCeEEEEECCHHHhcCccCCceEE
Confidence 5899999999999986 3567899999999999999887 4454444556778999999999999999999999
Q ss_pred ecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhhh
Q psy14417 74 QSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 114 (120)
Q Consensus 74 ~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 114 (120)
.||++.+|+.|.+.+.++...........|.+++.+++..+
T Consensus 321 ~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (574)
T PRK06882 321 VGSAKNVLEEFLSLLEEENLAKSQTDLTAWWQQINEWKAKK 361 (574)
T ss_pred ecCHHHHHHHHHHHhhhhcccccccccHHHHHHHHHHHHhC
Confidence 99999999999987752110000112356877777665443
No 23
>PRK11269 glyoxylate carboligase; Provisional
Probab=99.73 E-value=4.4e-17 Score=127.67 Aligned_cols=113 Identities=22% Similarity=0.354 Sum_probs=86.7
Q ss_pred CCCCCCCCCCccccCh--------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceE
Q psy14417 1 MGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVA 72 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~--------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~ 72 (120)
+|||+||++||+|+|+ .+++++++|||||+||+++++. +++.+..+.++.++||||.|+..+++++++++.
T Consensus 239 ~gkg~~p~~hpl~~G~~g~~~~~~~~~~~~~~aDlvl~lG~~~~~~-~~~~~~~~~~~~~~i~Vd~d~~~~~~~~~~~~~ 317 (591)
T PRK11269 239 MGWGAIPDDHPLMAGMVGLQTSHRYGNATLLASDFVLGIGNRWANR-HTGSVEVYTKGRKFVHVDIEPTQIGRVFGPDLG 317 (591)
T ss_pred cccCcCCCCChhhccCCcCCCCcHHHHHHHHhCCEEEEeCCCCCcc-ccCchhhcCCCCeEEEeeCCHHHhCCCCCCCeE
Confidence 5899999999999985 2457899999999999999886 444444455677899999999999999999999
Q ss_pred EecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhhh
Q psy14417 73 IQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 114 (120)
Q Consensus 73 i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 114 (120)
+++|++.+|+.|++.+.++...........|.+.+.++++++
T Consensus 318 i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (591)
T PRK11269 318 IVSDAKAALELLVEVAREWKAAGRLPDRSAWVADCQERKRTL 359 (591)
T ss_pred EEeCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhc
Confidence 999999999999987752110000012356877776665543
No 24
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=99.73 E-value=3.9e-17 Score=127.86 Aligned_cols=89 Identities=29% Similarity=0.421 Sum_probs=75.4
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCccccc--CCCCCCCCCCeEEEEcCChhhhhhccccce
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHF--GRAPRFKSNVKIIQVDLNAEELHNSVQAAV 71 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~--~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~ 71 (120)
+|||+||++||+|+|+ ...+++++|||||+||++++++.+. ..+..+++++++||||.|+..++++++.++
T Consensus 236 ~gkg~~p~~hpl~~G~~g~~g~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~~~iI~Id~d~~~~~~~~~~~~ 315 (588)
T PRK07525 236 LHNDAFPGSHPLWVGPLGYNGSKAAMELIAKADVVLALGTRLNPFGTLPQYGIDYWPKDAKIIQVDINPDRIGLTKKVSV 315 (588)
T ss_pred cccccCCCCCccccccCcccCcHHHHHHHHhCCEEEEECCCCchhhcccccccccCCCCCeEEEEECCHHHhCCCCCCCc
Confidence 5899999999999995 3567899999999999999875322 112335567899999999999999999999
Q ss_pred EEecCHHHHHHHHHHHhh
Q psy14417 72 AIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 72 ~i~~d~~~~l~~L~~~l~ 89 (120)
.|+||+..+|++|++.+.
T Consensus 316 ~i~~D~~~~l~~L~~~l~ 333 (588)
T PRK07525 316 GICGDAKAVARELLARLA 333 (588)
T ss_pred eEecCHHHHHHHHHHhhh
Confidence 999999999999999885
No 25
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=99.72 E-value=4.4e-17 Score=127.80 Aligned_cols=103 Identities=17% Similarity=0.349 Sum_probs=81.5
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|||+||++||+|+|+ .+++++++|||||+||+++.+. .+ . ...+++++||||.|+.+++++++.++.|
T Consensus 242 ~gkg~~~e~hp~~~G~~G~~g~~~a~~~~~~aDlvl~lG~~~~~~-~~--~-~~~~~~~~i~Id~d~~~~~~~~~~~~~i 317 (597)
T PRK08273 242 LGKAALPDDLPWVTGSIGLLGTKPSYELMRECDTLLMVGSSFPYS-EF--L-PKEGQARGVQIDIDGRMLGLRYPMEVNL 317 (597)
T ss_pred cCcccCCCCCccceecCCCCccHHHHHHHHhCCEEEEeCCCCCHH-hc--C-CCCCCCeEEEEeCCHHHcCCCCCCCceE
Confidence 5899999999999985 4678899999999999998643 11 1 1123578999999999999999999999
Q ss_pred ecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhhh
Q psy14417 74 QSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 114 (120)
Q Consensus 74 ~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 114 (120)
+||++.+|++|++.+. . .....|.+.+.+++.+|
T Consensus 318 ~~D~~~~l~~L~~~l~--~-----~~~~~~~~~~~~~~~~~ 351 (597)
T PRK08273 318 VGDAAETLRALLPLLE--R-----KKDRSWRERIEKWVARW 351 (597)
T ss_pred ecCHHHHHHHHHHhhh--c-----cCCHHHHHHHHHHHHHh
Confidence 9999999999998876 2 11245776666655554
No 26
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.72 E-value=7.1e-17 Score=126.05 Aligned_cols=107 Identities=23% Similarity=0.385 Sum_probs=87.0
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|||+||++||+|+|+ .+++++++|||||++|++++++ .++.+..+.++.++||||.|+..++++++.++.+
T Consensus 251 ~~kg~i~~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~~~~~-~~~~~~~~~~~~~~i~id~d~~~ig~~~~~~~~i 329 (571)
T PRK07710 251 LGLGGFPADHPLFLGMAGMHGTYTANMALYECDLLINIGARFDDR-VTGNLAYFAKEATVAHIDIDPAEIGKNVPTEIPI 329 (571)
T ss_pred ccCccCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEeCCCCCcc-ccCchhhcCCCCeEEEEECCHHHhcCcCCCCeEE
Confidence 5899999999999996 3678899999999999999886 4554444666788999999999999999999999
Q ss_pred ecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhhh
Q psy14417 74 QSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 114 (120)
Q Consensus 74 ~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 114 (120)
++|++.+|++|++.+. .. .....|.+.++.+++++
T Consensus 330 ~~D~~~~l~~L~~~~~--~~----~~~~~~~~~~~~~~~~~ 364 (571)
T PRK07710 330 VADAKQALQVLLQQEG--KK----ENHHEWLSLLKNWKEKY 364 (571)
T ss_pred ecCHHHHHHHHHHhhh--cc----CCcHHHHHHHHHHHHhC
Confidence 9999999999988764 21 12356877777665543
No 27
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.72 E-value=7.1e-17 Score=125.44 Aligned_cols=102 Identities=29% Similarity=0.451 Sum_probs=83.1
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|||+||++||+|+|. .+..++++|||||++|+++++. .++.+..+.+..++||||.|+..+++++..++.+
T Consensus 232 ~gkg~~~~~hp~~~G~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~-~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i 310 (548)
T PRK08978 232 KGLGAVEADHPYYLGMLGMHGTKAANLAVQECDLLIAVGARFDDR-VTGKLNTFAPHAKVIHLDIDPAEINKLRQAHVAL 310 (548)
T ss_pred ccCCCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEEcCCCCcc-ccCCccccCCCCeEEEEECCHHHhCCCCCCCeEE
Confidence 5899999999999995 3567899999999999999876 4554444666778999999999999999999999
Q ss_pred ecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhh
Q psy14417 74 QSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQT 113 (120)
Q Consensus 74 ~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~ 113 (120)
.+|++.+|+.|.+.+. ...|.+++.++++.
T Consensus 311 ~~d~~~~l~~l~~~~~----------~~~~~~~~~~~~~~ 340 (548)
T PRK08978 311 QGDLNALLPALQQPLN----------IDAWRQHCAQLRAE 340 (548)
T ss_pred ecCHHHHHHHHHHhcc----------chHHHHHHHHHHHh
Confidence 9999999999986553 13476666655443
No 28
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=99.71 E-value=9.2e-17 Score=125.06 Aligned_cols=109 Identities=26% Similarity=0.464 Sum_probs=87.0
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|||+||++||+|+|+ .+..++++|||||+||+++++. .++.+..+.++.++||||.|+..+++++.+++.+
T Consensus 237 ~~kg~~~e~hp~~~G~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~-~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i 315 (558)
T TIGR00118 237 MGLGSFPEDHPLSLGMLGMHGTKTANLAVHECDLIIAVGARFDDR-VTGNLAKFAPNAKIIHIDIDPAEIGKNVRVDIPI 315 (558)
T ss_pred ccCCCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEECCCCCcc-ccCchhhcCCCCcEEEEeCCHHHhCCcCCCCeEE
Confidence 5899999999999995 3568899999999999999886 4544444556788999999999999988899999
Q ss_pred ecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhhh
Q psy14417 74 QSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 114 (120)
Q Consensus 74 ~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 114 (120)
.||++.+|+.|++.+. .. .......|.+.++.+++.+
T Consensus 316 ~~d~~~~l~~L~~~l~--~~--~~~~~~~~~~~~~~~~~~~ 352 (558)
T TIGR00118 316 VGDARNVLEELLKKLF--EL--KERKESAWLEQINKWKKEY 352 (558)
T ss_pred ecCHHHHHHHHHHhhh--hc--cccCcHHHHHHHHHHHHhC
Confidence 9999999999998775 21 0012346877777665543
No 29
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.71 E-value=8.9e-17 Score=125.84 Aligned_cols=109 Identities=26% Similarity=0.486 Sum_probs=87.0
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|||+||++||+|+|. ...+++++|||||++|+++++. .++.+..+.++.++||||.|+..+++++..++.|
T Consensus 239 ~~kg~~p~~hp~~~G~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~-~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i 317 (586)
T PRK06276 239 MGKGAFPEDHPLALGMVGMHGTKAANYSVTESDVLIAIGCRFSDR-TTGDISSFAPNAKIIHIDIDPAEIGKNVRVDVPI 317 (586)
T ss_pred CCCccCCCCCcccccCCCCCCCHHHHHHHHcCCEEEEECCCCCcc-ccCCccccCCCCeEEEEECCHHHhCCcCCCceEE
Confidence 6899999999999986 3567899999999999999876 4454444566789999999999999988899999
Q ss_pred ecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhhh
Q psy14417 74 QSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 114 (120)
Q Consensus 74 ~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 114 (120)
.||++.+|++|++.+.+.. ......|.+.+..++.++
T Consensus 318 ~~D~~~~L~~L~~~l~~~~----~~~~~~~~~~~~~~~~~~ 354 (586)
T PRK06276 318 VGDAKNVLRDLLAELMKKE----IKNKSEWLERVKKLKKES 354 (586)
T ss_pred ecCHHHHHHHHHHhhhhhc----ccchHHHHHHHHHHHHhc
Confidence 9999999999998875211 122356877776655543
No 30
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.71 E-value=1.6e-16 Score=124.23 Aligned_cols=87 Identities=30% Similarity=0.474 Sum_probs=73.9
Q ss_pred CCCCCCCCCCccccCh------------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccc
Q psy14417 1 MGKGVVPDAHPNCVSA------------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQ 68 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~------------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~ 68 (120)
+|||+||++||+|+|. .+.+++++|||||+||++++++. ++.+..+.++.++||||.|+.++++++.
T Consensus 249 ~~kg~~p~~hp~~~G~~g~~~~~~~~~~~~~~~l~~aDlvl~lG~~~~~~~-~~~~~~~~~~~~~i~id~d~~~~~~~~~ 327 (578)
T PRK06112 249 MGKGAVDETHPLSLGVVGSLMGPRSPGRHLRDLVREADVVLLVGTRTNQNG-TDSWSLYPEQAQYIHIDVDGEEVGRNYE 327 (578)
T ss_pred cccccCCCCCccccccccccCCCccchHHHHHHHHhCCEEEEECCCCCccc-cccccccCCCCeEEEEECChHHhCcccc
Confidence 5899999999999985 24578899999999999998874 4444445567899999999999998776
Q ss_pred cceEEecCHHHHHHHHHHHhh
Q psy14417 69 AAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 69 ~~~~i~~d~~~~l~~L~~~l~ 89 (120)
++.++||++.+|++|++.+.
T Consensus 328 -~~~i~~D~~~~l~~L~~~l~ 347 (578)
T PRK06112 328 -ALRLVGDARLTLAALTDALR 347 (578)
T ss_pred -ceEEEeCHHHHHHHHHHhhh
Confidence 69999999999999998775
No 31
>KOG4166|consensus
Probab=99.70 E-value=3.4e-17 Score=122.11 Aligned_cols=111 Identities=24% Similarity=0.362 Sum_probs=97.7
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCe---------EEEEcCChhhhh
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVK---------IIQVDLNAEELH 64 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~---------vi~Id~d~~~i~ 64 (120)
||-|.+|.++|+.+-+ |++.++++|||||++|++|++. .+|+...|.+.++ |||+|++|..||
T Consensus 335 ~GLGs~d~~d~lSLhMLGMHG~~yAN~Avq~aDLilA~GvRFDDR-VTGn~s~FAp~Ar~aaae~rggIiHfdispknIg 413 (675)
T KOG4166|consen 335 MGLGSYDCDDELSLHMLGMHGTVYANYAVQHADLILAFGVRFDDR-VTGNLSAFAPRARRAAAEGRGGIIHFDISPKNIG 413 (675)
T ss_pred hcccCcCCCCchhhhhhcccccceehhhhhccceeEEecceeccc-cccchhhhChhhhhhhhcccCceEEEecCHHHhC
Confidence 6889999999987643 7899999999999999999997 7898888888777 999999999999
Q ss_pred hccccceEEecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhhhhh
Q psy14417 65 NSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQ 116 (120)
Q Consensus 65 ~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 116 (120)
+...+.++|.||+...|..+...++++. .+.+-+|+.++..|+++|+-
T Consensus 414 Kvvqp~~aveGDv~~~L~~m~s~~kn~~----~~~r~dW~~qin~wK~~fP~ 461 (675)
T KOG4166|consen 414 KVVQPHVAVEGDVKLALQGMNSVLKNRA----EELRLDWRNQINVWKQKFPL 461 (675)
T ss_pred cccCcceeeeccHHHHHHHHHhHhhccc----chhhhhHHHHHHHHHHhCCe
Confidence 9999999999999999999998887332 24567799999999999864
No 32
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.70 E-value=2e-16 Score=123.43 Aligned_cols=110 Identities=19% Similarity=0.336 Sum_probs=85.8
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCC-CCCeEEEEcCChhhhhhccccceE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFK-SNVKIIQVDLNAEELHNSVQAAVA 72 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~-~~~~vi~Id~d~~~i~~~~~~~~~ 72 (120)
+|||+||++||+|+|+ .+..++++|||||++|++++++. ++.+..+. +..++||||.|+..+++++..++.
T Consensus 243 ~gkg~i~~~hp~~~G~~g~~~~~~~~~~~~~aDlvl~lG~~~~~~~-~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~ 321 (572)
T PRK06456 243 PGKTAIPHDHPLYFGPMGYYGRAEASMAALESDAMLVVGARFSDRT-FTSYDEMVETRKKFIMVNIDPTDGEKAIKVDVG 321 (572)
T ss_pred ccCcCCCCCCccccccCCCCCCHHHHHHHHhCCEEEEECCCCchhh-ccccccccCCCCeEEEEeCChHHhCCccCCCeE
Confidence 5899999999999986 35678899999999999998873 44443333 367899999999999999999999
Q ss_pred EecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhhh
Q psy14417 73 IQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 114 (120)
Q Consensus 73 i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 114 (120)
+.||++.+|+.|++.+.++. .......|.+.+..+++.+
T Consensus 322 i~~D~~~~l~~L~~~l~~~~---~~~~~~~~~~~~~~~~~~~ 360 (572)
T PRK06456 322 IYGNAKIILRELIKAITELG---QKRDRSAWLKRVKEYKEYY 360 (572)
T ss_pred EecCHHHHHHHHHHHhhhcc---cccccHHHHHHHHHHHHhc
Confidence 99999999999998876211 0012346877777665544
No 33
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.70 E-value=2e-16 Score=123.15 Aligned_cols=88 Identities=24% Similarity=0.308 Sum_probs=73.5
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCC---CCCeEEEEcCChhhhhhccccc
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFK---SNVKIIQVDLNAEELHNSVQAA 70 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~---~~~~vi~Id~d~~~i~~~~~~~ 70 (120)
+|||+||++||+|+|. .+++++++|||||++|+++++.. ++.+..+. +..++||||.|+..+++++..+
T Consensus 240 ~~kg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~~~~~-~~~~~~~~~~~~~~~~i~vd~d~~~~~~~~~~~ 318 (557)
T PRK08199 240 RRQDLFDNRHPNYAGDLGLGINPALAARIREADLVLAVGTRLGEVT-TQGYTLLDIPVPRQTLVHVHPDAEELGRVYRPD 318 (557)
T ss_pred CcCCCCCCCChhhccCCcCcCCHHHHHHHHhCCEEEEeCCCCcccc-ccccccccccCCCCeEEEEeCCHHHhCCccCCC
Confidence 5899999999999984 35678999999999999998763 33232222 4578999999999999999999
Q ss_pred eEEecCHHHHHHHHHHHhh
Q psy14417 71 VAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 71 ~~i~~d~~~~l~~L~~~l~ 89 (120)
+.|+||++.+|+.|++...
T Consensus 319 ~~i~~D~~~~l~~L~~~~~ 337 (557)
T PRK08199 319 LAIVADPAAFAAALAALEP 337 (557)
T ss_pred eEEecCHHHHHHHHHhccc
Confidence 9999999999999987543
No 34
>PRK07524 hypothetical protein; Provisional
Probab=99.69 E-value=2.2e-16 Score=122.39 Aligned_cols=89 Identities=26% Similarity=0.354 Sum_probs=74.6
Q ss_pred CCCCCCCCCCccccCh-----HHHHhhhhcCEEEEeCCCCCcccccC-CCCCCCCCCeEEEEcCChhhhhhccccceEEe
Q psy14417 1 MGKGVVPDAHPNCVSA-----ARTHALQNADLVLLLGARLNWMLHFG-RAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQ 74 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-----~~~~~l~~aDlil~iG~~~~~~~~~~-~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~ 74 (120)
+|||.||++||+|+|. .+++++++|||||++|+++.++.... ....+.++.++||||.|+.+++++++.++.|.
T Consensus 235 ~~kg~~p~~hp~~~G~~~~~~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~ 314 (535)
T PRK07524 235 NAKGLLPAGHPLLLGASQSLPAVRALIAEADVVLAVGTELGETDYDVYFDGGFPLPGELIRIDIDPDQLARNYPPALALV 314 (535)
T ss_pred cccccCCCCChhhccCCCCCHHHHHHHHhCCEEEEeCCCcCccccccccccccCCCCCEEEEECCHHHhCCCcCCCceEe
Confidence 5899999999999986 46788999999999999987542211 11234456789999999999999999999999
Q ss_pred cCHHHHHHHHHHHhh
Q psy14417 75 SDVRLTVQQLKQMLS 89 (120)
Q Consensus 75 ~d~~~~l~~L~~~l~ 89 (120)
||++.+|++|++.+.
T Consensus 315 ~D~~~~L~~L~~~l~ 329 (535)
T PRK07524 315 GDARAALEALLARLP 329 (535)
T ss_pred cCHHHHHHHHHHhcc
Confidence 999999999999886
No 35
>PRK05858 hypothetical protein; Provisional
Probab=99.69 E-value=2.3e-16 Score=122.52 Aligned_cols=105 Identities=30% Similarity=0.499 Sum_probs=84.4
Q ss_pred CCCCCCCCCCccccChHHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEEecCHHHH
Q psy14417 1 MGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLT 80 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~~ 80 (120)
+|||+||++||+|+|....+++++|||||++|+++++..+.+ .+.+++++||||.|+..+++++..++.+.+|++.+
T Consensus 239 ~~kg~~~~~hpl~~~~~~~~~l~~aD~vl~vG~~~~~~~~~~---~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~ 315 (542)
T PRK05858 239 MGRGVVPADHPLAFSRARGKALGEADVVLVVGVPMDFRLGFG---VFGGTAQLVHVDDAPPQRAHHRPVAAGLYGDLSAI 315 (542)
T ss_pred CcCCCCCCCCchhhhHHHHHHHHhCCEEEEECCCCccccccc---ccCCCCEEEEECCCHHHhcCCCCCceEEeCCHHHH
Confidence 589999999999999888899999999999999987652222 24446799999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCCccCCCchHHHHHHHHHhhh
Q psy14417 81 VQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 114 (120)
Q Consensus 81 l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 114 (120)
+++|.+.+. .. .....|.+.++++++.+
T Consensus 316 l~~L~~~l~--~~----~~~~~~~~~~~~~~~~~ 343 (542)
T PRK05858 316 LSALAGAGG--DR----TDHQGWIEELRTAETAA 343 (542)
T ss_pred HHHHHHhcc--cc----cCcHHHHHHHHHHHHhh
Confidence 999998775 21 12345776666654433
No 36
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.69 E-value=2.4e-16 Score=123.28 Aligned_cols=89 Identities=30% Similarity=0.386 Sum_probs=74.9
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCccccc--CCCCCCCCCCeEEEEcCChhhhhhccccce
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHF--GRAPRFKSNVKIIQVDLNAEELHNSVQAAV 71 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~--~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~ 71 (120)
+|||+||++||+|+|+ .+++++++|||||+||++++++.+. .....+++++++||||.|+..+++++..++
T Consensus 232 ~gkg~~p~~hp~~~G~~g~~g~~~~~~~l~~aDlil~lG~~~~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~ 311 (579)
T TIGR03457 232 LHNDSFPASHPLWVGPLGYQGSKAAMKLISDADVVLALGTRLGPFGTLPQYGIDYWPKNAKIIQVDANAKMIGLVKKVTV 311 (579)
T ss_pred cccccCCCCCchhccCCcCcchHHHHHHHHhCCEEEEECCCCcccccccccccccCCCCCeEEEEeCCHHHhCCCCCCCe
Confidence 5899999999999995 3567899999999999999865322 111234557899999999999999999999
Q ss_pred EEecCHHHHHHHHHHHhh
Q psy14417 72 AIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 72 ~i~~d~~~~l~~L~~~l~ 89 (120)
.|+||++.+|++|++.+.
T Consensus 312 ~i~~D~~~~l~~L~~~l~ 329 (579)
T TIGR03457 312 GICGDAKAAAAEILQRLA 329 (579)
T ss_pred eEecCHHHHHHHHHHhhh
Confidence 999999999999999875
No 37
>PRK08611 pyruvate oxidase; Provisional
Probab=99.68 E-value=4.9e-16 Score=121.52 Aligned_cols=83 Identities=24% Similarity=0.500 Sum_probs=71.6
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|||+||++||+|+|+ .+.+++++|||||+||+++++. . .+.++.++||||.|+.+++++++.++.|
T Consensus 237 ~gkg~~~~~hp~~~G~~g~~~~~~a~~~l~~aDlvl~iG~~~~~~-~-----~~~~~~~~i~id~d~~~i~~~~~~~~~i 310 (576)
T PRK08611 237 PAKGIIPDDHPYSLGNLGKIGTKPAYEAMQEADLLIMVGTNYPYV-D-----YLPKKAKAIQIDTDPANIGKRYPVNVGL 310 (576)
T ss_pred ccccccCCCCccccccCCCCCcHHHHHHHHhCCEEEEeCCCCCcc-c-----cCCCCCcEEEEeCCHHHcCCccCCCeeE
Confidence 6899999999999985 3567899999999999987643 1 1334578999999999999999999999
Q ss_pred ecCHHHHHHHHHHHhh
Q psy14417 74 QSDVRLTVQQLKQMLS 89 (120)
Q Consensus 74 ~~d~~~~l~~L~~~l~ 89 (120)
+||++.+|+.|++.+.
T Consensus 311 ~~D~~~~l~~L~~~l~ 326 (576)
T PRK08611 311 VGDAKKALHQLTENIK 326 (576)
T ss_pred ecCHHHHHHHHHHhcc
Confidence 9999999999998775
No 38
>PRK07064 hypothetical protein; Provisional
Probab=99.67 E-value=7e-16 Score=119.77 Aligned_cols=107 Identities=22% Similarity=0.323 Sum_probs=83.5
Q ss_pred CCCCCCCCCCccccCh-----HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEEec
Q psy14417 1 MGKGVVPDAHPNCVSA-----ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQS 75 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-----~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~ 75 (120)
+|||+||++||+|+|. .++.++++|||||+||+++++.. ++.+. +....++||||.|+..++++++.++.+.+
T Consensus 236 ~~kg~~~~~hp~~~G~~~~~~~~~~~~~~aDlvl~iG~~~~~~~-~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~ 313 (544)
T PRK07064 236 QGRGVVPEDHPASLGAFNNSAAVEALYKTCDLLLVVGSRLRGNE-TLKYS-LALPRPLIRVDADAAADGRGYPNDLFVHG 313 (544)
T ss_pred CccccCCCCChhhcccCCCCHHHHHHHHhCCEEEEecCCCCccc-ccccc-cCCCCceEEEeCCHHHhCCcCCCCceEec
Confidence 6899999999999996 36678999999999999998763 33332 22346899999999999998899999999
Q ss_pred CHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhhh
Q psy14417 76 DVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 114 (120)
Q Consensus 76 d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 114 (120)
|++.+|++|++.+..+. .....|.+.+..++.++
T Consensus 314 d~~~~l~~L~~~l~~~~-----~~~~~~~~~~~~~~~~~ 347 (544)
T PRK07064 314 DAARVLARLADRLEGRL-----SVDPAFAADLRAAREAA 347 (544)
T ss_pred CHHHHHHHHHHhhhhcc-----ccchHHHHHHHHHHHhh
Confidence 99999999998775210 12345776666555443
No 39
>PRK08266 hypothetical protein; Provisional
Probab=99.66 E-value=1.1e-15 Score=118.74 Aligned_cols=106 Identities=26% Similarity=0.401 Sum_probs=82.7
Q ss_pred CCCCCCCCCCccccCh-HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEEecCHHH
Q psy14417 1 MGKGVVPDAHPNCVSA-ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRL 79 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~ 79 (120)
+|||+||++||+|+|. .+..++++|||||+||+++.+. .++ +..+.+..++||||.|+..+++ +.+++.|.||++.
T Consensus 239 ~~kg~~~~~hp~~~g~~~~~~~~~~aDlvl~lG~~~~~~-~~~-~~~~~~~~~~i~id~d~~~~~~-~~~~~~i~~D~~~ 315 (542)
T PRK08266 239 SGRGIVSDRHPLGLNFAAAYELWPQTDVVIGIGSRLELP-TFR-WPWRPDGLKVIRIDIDPTEMRR-LKPDVAIVADAKA 315 (542)
T ss_pred cccccCCCCCccccCCHHHHHHHHhCCEEEEeCCCcCcc-ccc-ccccCCCCcEEEEECCHHHhCC-cCCCceEecCHHH
Confidence 5899999999999997 4567899999999999999876 332 3334456789999999999999 8899999999999
Q ss_pred HHHHHHHHhhhcccCCccCCCchHHHHHHHHHhhh
Q psy14417 80 TVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 114 (120)
Q Consensus 80 ~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 114 (120)
+|++|++.+. .. . .....|.+.+..+++.+
T Consensus 316 ~l~~L~~~l~--~~--~-~~~~~~~~~~~~~~~~~ 345 (542)
T PRK08266 316 GTAALLDALS--KA--G-SKRPSRRAELRELKAAA 345 (542)
T ss_pred HHHHHHHhhh--hc--c-cCchHHHHHHHHHHHhh
Confidence 9999998876 21 0 12345766666554433
No 40
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.65 E-value=1.2e-15 Score=119.44 Aligned_cols=82 Identities=29% Similarity=0.476 Sum_probs=71.5
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|||+||++||+|+|+ .++.++++|||||+||+++++. .+.++.++||||.|+.+++++++.++.|
T Consensus 235 ~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~lG~~~~~~-------~~~~~~~~I~vd~d~~~~~~~~~~~~~i 307 (578)
T PRK06546 235 RGKEWIQYDNPFDVGMSGLLGYGAAHEAMHEADLLILLGTDFPYD-------QFLPDVRTAQVDIDPEHLGRRTRVDLAV 307 (578)
T ss_pred ccccCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEEcCCCChh-------hcCCCCcEEEEeCCHHHhCCCCCCCeEE
Confidence 5899999999999985 3578899999999999987642 1234568999999999999998899999
Q ss_pred ecCHHHHHHHHHHHhh
Q psy14417 74 QSDVRLTVQQLKQMLS 89 (120)
Q Consensus 74 ~~d~~~~l~~L~~~l~ 89 (120)
.||++.+|++|++.+.
T Consensus 308 ~~D~~~~l~~L~~~L~ 323 (578)
T PRK06546 308 HGDVAETIRALLPLVK 323 (578)
T ss_pred EcCHHHHHHHHHHhhc
Confidence 9999999999998886
No 41
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=99.65 E-value=1.5e-15 Score=118.71 Aligned_cols=86 Identities=23% Similarity=0.451 Sum_probs=71.6
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|||+||++||+|+|+ .+.+++++|||||++|++++.. .+. ..+.....+||||.|+..+++++++++.|
T Consensus 234 ~gkg~~~~~hpl~~G~~g~~~~~~~~~~l~~aDlvl~vG~~~~~~-~~~--~~~~~~~~~I~id~d~~~~~~~~~~~~~i 310 (575)
T TIGR02720 234 LAKGIIEDRYPAYLGSAYRVAQKPANEALFQADLVLFVGNNYPFA-EVS--KAFKNTKYFIQIDIDPAKLGKRHHTDIAV 310 (575)
T ss_pred cccccCCCCCcccccCCcCCCcHHHHHHHHhCCEEEEeCCCCCcc-ccc--cccCCCceEEEEeCCHHHhCCCCCCCeEE
Confidence 5899999999999995 3467899999999999998653 221 12333445699999999999999999999
Q ss_pred ecCHHHHHHHHHHHhh
Q psy14417 74 QSDVRLTVQQLKQMLS 89 (120)
Q Consensus 74 ~~d~~~~l~~L~~~l~ 89 (120)
.||++.+|++|++.+.
T Consensus 311 ~~D~~~~l~~L~~~l~ 326 (575)
T TIGR02720 311 LADAKKALAAILAQVE 326 (575)
T ss_pred ecCHHHHHHHHHHhcc
Confidence 9999999999998876
No 42
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=99.65 E-value=1.6e-15 Score=117.77 Aligned_cols=107 Identities=17% Similarity=0.221 Sum_probs=80.9
Q ss_pred CCCCCCCCCC-ccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceE
Q psy14417 1 MGKGVVPDAH-PNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVA 72 (120)
Q Consensus 1 ~~kg~~~~~h-p~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~ 72 (120)
+|||+||++| |+|+|+ .+++++++|||||++|+++.++. +..+. ...+.++||||.|+.+++++++.++.
T Consensus 231 ~gkg~i~~~~~~~~~G~~G~~~~~~~~~~~~~aDlvl~lG~~~~~~~-~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~ 308 (539)
T TIGR02418 231 QGAGAVSRELEDHFFGRVGLFRNQPGDRLLKQADLVITIGYDPIEYE-PRNWN-SENDATIVHIDVEPAQIDNNYQPDLE 308 (539)
T ss_pred ccCcCCCCCCChhhcccCcCCCcHHHHHHHHhCCEEEEecCcccccC-ccccC-cCCCCeEEEEeCChHHcCCccCCCeE
Confidence 6899999997 889885 45688999999999999987663 33232 22357899999999999999999999
Q ss_pred EecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHh
Q psy14417 73 IQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQ 112 (120)
Q Consensus 73 i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~ 112 (120)
++||++.+|+.|++.+.+.. ......+|.+.++++++
T Consensus 309 i~~D~~~~l~~L~~~l~~~~---~~~~~~~~~~~~~~~~~ 345 (539)
T TIGR02418 309 LVGDIASTLDLLAERIPGYE---LPPDALAILEDLKQQRE 345 (539)
T ss_pred EecCHHHHHHHHHHhhcccc---CccchHHHHHHHHHHHH
Confidence 99999999999998776211 01123356665555444
No 43
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.65 E-value=1.7e-15 Score=118.31 Aligned_cols=83 Identities=29% Similarity=0.456 Sum_probs=71.6
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|||+||++||+|+|. .+++++++|||||+||+++++. . .+.++.++||||.|+.+++++++.++.|
T Consensus 235 ~gkg~~~~~hp~~~G~~G~~~~~~~~~~~~~aDlvl~lG~~~~~~-~-----~~~~~~~ii~id~d~~~~~~~~~~~~~i 308 (574)
T PRK09124 235 RGKEHVEYDNPYDVGMTGLIGFSSGYHAMMNCDTLLMLGTDFPYR-Q-----FYPTDAKIIQIDINPGSLGRRSPVDLGL 308 (574)
T ss_pred cccccCCCCCcccccCCccCCCHHHHHHHHhCCEEEEECCCCCcc-c-----ccCCCCcEEEeeCCHHHhCCCCCCCeEE
Confidence 5899999999999996 3467899999999999988643 1 1334578999999999999999999999
Q ss_pred ecCHHHHHHHHHHHhh
Q psy14417 74 QSDVRLTVQQLKQMLS 89 (120)
Q Consensus 74 ~~d~~~~l~~L~~~l~ 89 (120)
+||++.+|++|++.+.
T Consensus 309 ~~D~~~~l~~L~~~l~ 324 (574)
T PRK09124 309 VGDVKATLAALLPLLE 324 (574)
T ss_pred EccHHHHHHHHHHhhh
Confidence 9999999999988775
No 44
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=99.64 E-value=1.1e-15 Score=119.41 Aligned_cols=86 Identities=23% Similarity=0.360 Sum_probs=74.3
Q ss_pred CCCCCCCCCCccccChHHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhh---hccccceEEecCH
Q psy14417 1 MGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELH---NSVQAAVAIQSDV 77 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~---~~~~~~~~i~~d~ 77 (120)
+|||+||++||+|+|..+++++++|||||++|+++.+.. +.. .+.++.++||||.|+.+++ ++++.++.|+||+
T Consensus 256 ~gkg~~~~~hp~~~G~~~~~~~~~aDlvl~lG~~l~~~~-~~~--~~~~~~~vi~Id~d~~~~~~~~~~~~~~~~i~~D~ 332 (569)
T PRK08327 256 GEVVNYPSDHPLHLGPDPRADLAEADLVLVVDSDVPWIP-KKI--RPDADARVIQIDVDPLKSRIPLWGFPCDLCIQADT 332 (569)
T ss_pred CCceeCCCCCccccccccchhhhhCCEEEEeCCCCCCcc-ccc--cCCCCCeEEEEeCChhhhcccccCcceeEEEecCH
Confidence 589999999999999888889999999999999987653 221 2445679999999999986 4778899999999
Q ss_pred HHHHHHHHHHhh
Q psy14417 78 RLTVQQLKQMLS 89 (120)
Q Consensus 78 ~~~l~~L~~~l~ 89 (120)
+.+|++|++.+.
T Consensus 333 ~~~l~~L~~~l~ 344 (569)
T PRK08327 333 STALDQLEERLK 344 (569)
T ss_pred HHHHHHHHHHHh
Confidence 999999999886
No 45
>PRK08322 acetolactate synthase; Reviewed
Probab=99.64 E-value=2.5e-15 Score=116.75 Aligned_cols=87 Identities=25% Similarity=0.353 Sum_probs=74.2
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|||+||++||+|+|. .++.++++|||||+||+++.+.. +..+. ..++.++||||.|+..+++++.+++.+
T Consensus 232 ~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlil~lG~~l~~~~-~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i 309 (547)
T PRK08322 232 MGKGVIPETHPLSLGTAGLSQGDYVHCAIEHADLIINVGHDVIEKP-PFFMN-PNGDKKVIHINFLPAEVDPVYFPQVEV 309 (547)
T ss_pred ccCCcCCCCCchhccCCCCCCCHHHHHHHHhCCEEEEECCCCcccc-ccccC-CCCCCeEEEEeCCHHHcCCCcCCCeEE
Confidence 5899999999999996 35788999999999999998763 32232 235678999999999999988899999
Q ss_pred ecCHHHHHHHHHHHhh
Q psy14417 74 QSDVRLTVQQLKQMLS 89 (120)
Q Consensus 74 ~~d~~~~l~~L~~~l~ 89 (120)
+||++.+|++|.+.+.
T Consensus 310 ~~D~~~~l~~L~~~l~ 325 (547)
T PRK08322 310 VGDIANSLWQLKERLA 325 (547)
T ss_pred ecCHHHHHHHHHHhcc
Confidence 9999999999998775
No 46
>PRK08617 acetolactate synthase; Reviewed
Probab=99.61 E-value=5.9e-15 Score=114.87 Aligned_cols=107 Identities=19% Similarity=0.199 Sum_probs=80.1
Q ss_pred CCCCCCCCCCc-cccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceE
Q psy14417 1 MGKGVVPDAHP-NCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVA 72 (120)
Q Consensus 1 ~~kg~~~~~hp-~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~ 72 (120)
+|||+||++|| +|+|. .+++++++|||||++|+++.++. +..+. ..++.++||||.|+..+++++++++.
T Consensus 237 ~gkg~~~~~hp~~~~G~~g~~~~~~~~~~~~~aDlvl~lG~~~~~~~-~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~ 314 (552)
T PRK08617 237 QAAGVISRELEDHFFGRVGLFRNQPGDELLKKADLVITIGYDPIEYE-PRNWN-SEGDATIIHIDVLPAEIDNYYQPERE 314 (552)
T ss_pred ccCccCCCCCchhhccCCcCCCcHHHHHHHHhCCEEEEecCcccccc-ccccc-cCCCCcEEEEeCChHHhCCccCCCeE
Confidence 58999999998 68885 35678999999999999887653 22222 12357899999999999999999999
Q ss_pred EecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHh
Q psy14417 73 IQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQ 112 (120)
Q Consensus 73 i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~ 112 (120)
+.+|++.+|+.|++.++++. ......+|.+.+++.++
T Consensus 315 i~~D~~~~l~~L~~~l~~~~---~~~~~~~~~~~~~~~~~ 351 (552)
T PRK08617 315 LIGDIAATLDLLAEKLDGLS---LSPQSLEILEELRAQLE 351 (552)
T ss_pred EeCCHHHHHHHHHHhhhccc---CccchHHHHHHHHHHHH
Confidence 99999999999998775211 01123456655555443
No 47
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=99.59 E-value=2.4e-15 Score=109.90 Aligned_cols=112 Identities=21% Similarity=0.364 Sum_probs=94.6
Q ss_pred CCCCCCCCCCccccCh--------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceE
Q psy14417 1 MGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVA 72 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~--------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~ 72 (120)
||-|++|.+||+..|+ |.+.-+-.+|+|+.||.++... .+|+...+..+.+.||+|++|.+||+.+.+++.
T Consensus 239 mgwg~ipddhplmagm~glqtshrygnatll~sd~vfgignrwanr-htgsv~vyt~gr~fihvdieptqigrvf~pdlg 317 (592)
T COG3960 239 MGWGCIPDDHPLMAGMVGLQTSHRYGNATLLASDMVFGIGNRWANR-HTGSVEVYTEGRKFIHVDIEPTQIGRVFCPDLG 317 (592)
T ss_pred ccccccCCcchhhcccccceecccccchhhhhhhheeeccchhhhc-ccCceeeeecCceEEEEeccccccceeecCccc
Confidence 7889999999999997 5677888999999999998765 677777777899999999999999999999999
Q ss_pred EecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhh
Q psy14417 73 IQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQT 113 (120)
Q Consensus 73 i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~ 113 (120)
|++|+++.|..+++...+++.....+.+..|.+.|++.+..
T Consensus 318 ivsda~aal~~~ldva~ewk~agkl~~~~aw~~~cq~rkrt 358 (592)
T COG3960 318 IVSDAKAALTLLLDVAQEWKKAGKLPCRKAWVADCQQRKRT 358 (592)
T ss_pred eeechHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHH
Confidence 99999999999998776554322235677898888876553
No 48
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.55 E-value=3.9e-14 Score=110.31 Aligned_cols=78 Identities=23% Similarity=0.461 Sum_probs=66.5
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|||+||++||+|+|+ .+++++++|||||++|+++++.. .+.++.++||||.|+.+++++++.++.+
T Consensus 229 ~gkg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~~~~~------~~~~~~~ii~id~d~~~~~~~~~~~~~i 302 (549)
T PRK06457 229 NGKGILPDLDPKVMGGIGLLGTKPSIEAMDKADLLIMLGTSFPYVN------FLNKSAKVIQVDIDNSNIGKRLDVDLSY 302 (549)
T ss_pred cccccCCCCChhhccCCCCCCCHHHHHHHHhCCEEEEECCCCChhh------cCCCCCcEEEEeCCHHHhCCCCCCCeEE
Confidence 5899999999999996 25678999999999999986531 1334678999999999999999999999
Q ss_pred ecCHHHHHHHH
Q psy14417 74 QSDVRLTVQQL 84 (120)
Q Consensus 74 ~~d~~~~l~~L 84 (120)
.+|++.+|+.+
T Consensus 303 ~~d~~~~l~~~ 313 (549)
T PRK06457 303 PIPVAEFLNID 313 (549)
T ss_pred ecCHHHHHHHH
Confidence 99999999543
No 49
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.54 E-value=4.7e-15 Score=115.17 Aligned_cols=86 Identities=21% Similarity=0.305 Sum_probs=71.9
Q ss_pred CCCCCCCCCCccccCh--------HHHHhhhhcCEEEEeCCCCCcccccCCCC-CCCCCCeEEEEcCChhhhhhccccce
Q psy14417 1 MGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLGARLNWMLHFGRAP-RFKSNVKIIQVDLNAEELHNSVQAAV 71 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~--------~~~~~l~~aDlil~iG~~~~~~~~~~~~~-~~~~~~~vi~Id~d~~~i~~~~~~~~ 71 (120)
+|||+||++||+|+|. .+++++++|||||++|++++++. ++.+. .+. .+++||||+|+..+++++..++
T Consensus 241 ~gkg~~~~~hpl~lG~~~g~~~~~~~~~~~~~aDlvl~lG~~l~~~~-~~~~~~~~~-~~~~I~id~~~~~~~~~~~~~~ 318 (539)
T TIGR03393 241 MGKGILDEQQAGFYGTYSGSASTGAVKEAIEGADAVICVGVRFTDTI-TAGFTHQLT-PEQTIDVQPHAARVGNVWFTGI 318 (539)
T ss_pred ccCccccCcCCCeEEEEeCCCCCHHHHHHHhhCCEEEEECCcccccc-cceeeccCC-cccEEEEcCCeEEECceEeCCc
Confidence 5899999999999985 35688999999999999998863 33332 243 3689999999999999888888
Q ss_pred EEecCHHHHHHHHHHHhh
Q psy14417 72 AIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 72 ~i~~d~~~~l~~L~~~l~ 89 (120)
.+ +|+..+|.+|++.+.
T Consensus 319 ~i-~D~~~~l~~l~~~l~ 335 (539)
T TIGR03393 319 PM-NDAIETLVELCEHAG 335 (539)
T ss_pred CH-HHHHHHHHHHhhhcc
Confidence 88 999999999988764
No 50
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=99.54 E-value=8.4e-15 Score=113.79 Aligned_cols=86 Identities=23% Similarity=0.239 Sum_probs=71.2
Q ss_pred CCCCCCCCCCccccCh--------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceE
Q psy14417 1 MGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVA 72 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~--------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~ 72 (120)
+|||+||++||+|+|. ..++++++|||||+||++++++ +++....+.++.++||||.|+.+++++++.++.
T Consensus 237 ~gkg~~pe~hpl~~G~~~G~~~~~~~~~~l~~aDliL~iG~~l~~~-~~~~~~~~~~~~~~I~id~~~~~~~~~~~~~~~ 315 (535)
T TIGR03394 237 MGRGLLADAPTPPLGTYLGVAGDAELSRLVEESDGLLLLGVILSDT-NFAVSQRKIDLRRTIHAFDRAVTLGYHVYADIP 315 (535)
T ss_pred ccCcCCCCCCccccccccCCCCCHHHHHHHHhCCEEEEECCccccc-ccccccccCCCCcEEEEeCCEEEECCeeECCcc
Confidence 6899999999999994 3678899999999999999876 333222334567999999999999999888998
Q ss_pred EecCHHHHHHHHHHHh
Q psy14417 73 IQSDVRLTVQQLKQML 88 (120)
Q Consensus 73 i~~d~~~~l~~L~~~l 88 (120)
+ +|+..+|.+|++.+
T Consensus 316 i-~d~~~~L~~l~~~~ 330 (535)
T TIGR03394 316 L-AGLVDALLALLCGL 330 (535)
T ss_pred H-HHHHHHHHHhhhcc
Confidence 8 78898888887655
No 51
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=99.54 E-value=2.8e-14 Score=107.35 Aligned_cols=105 Identities=24% Similarity=0.366 Sum_probs=87.5
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCC-CCCeEEEEcCChhhhhhccccceE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFK-SNVKIIQVDLNAEELHNSVQAAVA 72 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~-~~~~vi~Id~d~~~i~~~~~~~~~ 72 (120)
.|||.++.+||+++|. .++.+.++|||||.||+++.++ +||++..|. ++.++|.||..+-.-.+. ..+.
T Consensus 265 aGKsal~~dhplNlG~vGvTGt~AAN~~A~~ADlVigiGTR~~DF-TTgS~alF~~~~~k~l~lNV~~~da~K~--~a~~ 341 (617)
T COG3962 265 AGKSALAWDHPLNLGGVGVTGTLAANRAAEEADLVIGIGTRLQDF-TTGSKALFKNPGVKFLNLNVQPFDAYKH--DALP 341 (617)
T ss_pred CCcccccccCccccccccccchHHHHhhhhhcCEEEEeccccccc-ccccHHHhcCCCceEEEeeccccccccc--ccce
Confidence 4899999999999984 5788999999999999999998 677777764 788999999988776654 5678
Q ss_pred EecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhhh
Q psy14417 73 IQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 114 (120)
Q Consensus 73 i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 114 (120)
+++|++..|.+|.+.|. . +.....|.+++.+.+..|
T Consensus 342 lvaDAr~~L~~L~~~L~--g----~~~~~~w~~~~~~~~~~w 377 (617)
T COG3962 342 LVADARAGLEALSEALG--G----YRTAAGWTDERERLKAAW 377 (617)
T ss_pred ehhHHHHHHHHHHHHhc--c----cccchhHHHHHHHhhhhh
Confidence 99999999999999997 3 344556888887766555
No 52
>PLN02573 pyruvate decarboxylase
Probab=99.51 E-value=3.1e-14 Score=111.52 Aligned_cols=85 Identities=20% Similarity=0.218 Sum_probs=69.0
Q ss_pred CCCCCCCCCCccccChH--------HHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceE
Q psy14417 1 MGKGVVPDAHPNCVSAA--------RTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVA 72 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~~--------~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~ 72 (120)
+|||+||++||+|+|++ +++++++|||||++|++++++. ++.+..+.+++++||||.|+.++++++ ++.
T Consensus 260 ~gkg~~pe~hpl~~G~~~G~~~~~~~~~~~~~aDlvl~lG~~l~~~~-~~~~~~~~~~~~~I~id~d~~~i~~~~--~~~ 336 (578)
T PLN02573 260 SAKGLVPEHHPHFIGTYWGAVSTPFCAEIVESADAYLFAGPIFNDYS-SVGYSLLLKKEKAIIVQPDRVTIGNGP--AFG 336 (578)
T ss_pred ccCCCCCCcCCCceEEeeCCCCCHHHHHHHHhCCEEEEECCccCCcc-cccccccCCCCcEEEEeCCEEEECCcc--eEC
Confidence 68999999999999853 4678999999999999998874 433433456788999999999998764 444
Q ss_pred EecCHHHHHHHHHHHhh
Q psy14417 73 IQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 73 i~~d~~~~l~~L~~~l~ 89 (120)
+. |++.+|+.|++.+.
T Consensus 337 ~~-~~~~~l~~L~~~l~ 352 (578)
T PLN02573 337 CV-LMKDFLEALAKRVK 352 (578)
T ss_pred Cc-CHHHHHHHHHHHhh
Confidence 44 79999999998775
No 53
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.50 E-value=9.4e-14 Score=107.76 Aligned_cols=87 Identities=25% Similarity=0.376 Sum_probs=70.4
Q ss_pred CCCCCCCCCccccCh------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEEec
Q psy14417 2 GKGVVPDAHPNCVSA------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQS 75 (120)
Q Consensus 2 ~kg~~~~~hp~~~G~------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~ 75 (120)
|||+||++||+|+|. ...+++++|||||++|+++.++..++....+.++.++||||.|+..+++ ++.++.+.|
T Consensus 244 ~kg~~~~~hp~~~G~~g~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~-~~~~~~i~~ 322 (530)
T PRK07092 244 GRCSFPEDHPLFAGFLPASREKISALLDGHDLVLVIGAPVFTYHVEGPGPHLPEGAELVQLTDDPGEAAW-APMGDAIVG 322 (530)
T ss_pred CcCcCCCCCccccCcCCccHHHHHHHHhhCCEEEEECCcccccccCCccccCCCCCeEEEEeCChHHhcC-CCCCCcccC
Confidence 799999999999995 3557899999999999975443233322335557789999999999876 457899999
Q ss_pred CHHHHHHHHHHHhh
Q psy14417 76 DVRLTVQQLKQMLS 89 (120)
Q Consensus 76 d~~~~l~~L~~~l~ 89 (120)
|++.+|++|++.+.
T Consensus 323 d~~~~l~~L~~~l~ 336 (530)
T PRK07092 323 DIRLALRDLLALLP 336 (530)
T ss_pred CHHHHHHHHHHhhc
Confidence 99999999998875
No 54
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=99.50 E-value=6.8e-14 Score=106.22 Aligned_cols=84 Identities=15% Similarity=0.059 Sum_probs=68.9
Q ss_pred CCCCCCCCCCccccChH--------HHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceE
Q psy14417 1 MGKGVVPDAHPNCVSAA--------RTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVA 72 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~~--------~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~ 72 (120)
+|||.+ ++| +|+|.+ +.+++ +|||||+||+++++...++ + .+.++.++||||.|+..+++++..++.
T Consensus 246 ~~~~~~-~~~-~~~G~~~~~~~~~~~~~~~-~aDlvl~lG~~~~~~~~~~-~-~~~~~~~~i~vd~d~~~~~~~~~~~~~ 320 (432)
T TIGR00173 246 LSGLRG-GPH-LVIDHYDLLLANPELREEL-QPDLVIRFGGPPVSKRLRQ-W-LARQPAEYWVVDPDPGWLDPSHHATTR 320 (432)
T ss_pred CCCCCC-CCC-CCcCHHHHHhcCCchhhhC-CCCEEEEeCCCcchhHHHH-H-HhCCCCcEEEECCCCCccCCCCCceEE
Confidence 589999 779 999853 34567 9999999999998763332 2 223457899999999999999999999
Q ss_pred EecCHHHHHHHHHHHhh
Q psy14417 73 IQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 73 i~~d~~~~l~~L~~~l~ 89 (120)
|+||++.+|++|++.+.
T Consensus 321 i~~D~~~~l~~l~~~~~ 337 (432)
T TIGR00173 321 LEASPAEFAEALAGLLK 337 (432)
T ss_pred EEECHHHHHHHhhhccC
Confidence 99999999999988775
No 55
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=99.48 E-value=3.2e-14 Score=108.08 Aligned_cols=86 Identities=24% Similarity=0.439 Sum_probs=73.0
Q ss_pred CCCCCCCCCCccccChH--------HHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceE
Q psy14417 1 MGKGVVPDAHPNCVSAA--------RTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVA 72 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~~--------~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~ 72 (120)
||||+|+|.||.|+|+| ..++++.|||||++|+.++++ ++|.++.-.+..++|+++++...|.......+.
T Consensus 245 mGKg~idEs~P~y~GvY~G~~s~~~vre~vE~aD~il~iG~~ltD~-~Tg~Ft~~~~~~~~i~~~~~~v~I~~~~f~~l~ 323 (557)
T COG3961 245 MGKGVIDESHPNYLGVYNGKLSEPEVREAVESADLILTIGVLLTDF-NTGGFTYQYKPANIIEIHPDSVKIKDAVFTNLS 323 (557)
T ss_pred cccccccccCCCeeeEEecccCCHHHHHHhhcCCEEEEeceEEeec-cccceeeecCcccEEEeccCeeEecccccCCee
Confidence 79999999999999984 578999999999999999998 566665544568999999999999877667776
Q ss_pred EecCHHHHHHHHHHHhhhc
Q psy14417 73 IQSDVRLTVQQLKQMLSHT 91 (120)
Q Consensus 73 i~~d~~~~l~~L~~~l~~~ 91 (120)
+ +.+|++|++.+..+
T Consensus 324 m----~~~L~~L~~~i~~~ 338 (557)
T COG3961 324 M----KDALQELAKKIDKR 338 (557)
T ss_pred H----HHHHHHHHHHhhhc
Confidence 5 99999998888643
No 56
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=99.47 E-value=9.5e-14 Score=108.43 Aligned_cols=81 Identities=14% Similarity=0.114 Sum_probs=66.1
Q ss_pred CCCCCCCCCCccccChH--------HHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceE
Q psy14417 1 MGKGVVPDAHPNCVSAA--------RTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVA 72 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~~--------~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~ 72 (120)
+|||.+|++||+|+|++ +.+++++|||||++|+++.+..+ ..+.. ....++||||.|+..+++++..++.
T Consensus 255 ~~~~~~~~~hp~~~G~~g~~~~~~~~~~~l~~aD~vl~vG~~l~~~~~-~~~~~-~~~~~~i~id~d~~~~~~~~~~~~~ 332 (568)
T PRK07449 255 LSPRNYAPLHPQPIPCYDLWLRNPKAAEELLQPDIVIQFGSPPTSKRL-LQWLA-DCEPEYWVVDPGPGRLDPAHHATRR 332 (568)
T ss_pred CCCCCCCCCCccccchHHHHhcCchhhhhcCCCCEEEEeCCCCCchhH-HHHHh-cCCCCEEEECCCCCcCCCCCCceEE
Confidence 58999999999999963 34678899999999999865422 21211 1234899999999999999999999
Q ss_pred EecCHHHHHHH
Q psy14417 73 IQSDVRLTVQQ 83 (120)
Q Consensus 73 i~~d~~~~l~~ 83 (120)
+.+|++.+|+.
T Consensus 333 i~~d~~~~l~~ 343 (568)
T PRK07449 333 LTASVATWLEA 343 (568)
T ss_pred EEEcHHHHHHh
Confidence 99999999998
No 57
>KOG1184|consensus
Probab=99.14 E-value=6.1e-11 Score=90.29 Aligned_cols=84 Identities=21% Similarity=0.367 Sum_probs=71.1
Q ss_pred CCCCCCCCCCccccChH--------HHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceE
Q psy14417 1 MGKGVVPDAHPNCVSAA--------RTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVA 72 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~~--------~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~ 72 (120)
||||.+||+||+|.|+| ..++++.||+||.+|+.++++ .++++....+..++|+++.|...+.......+.
T Consensus 248 ~gKg~i~E~hp~y~Gvy~G~vs~~~~~e~vesaDlil~~G~~~sd~-ss~~~~~~~k~~~~i~~~~d~v~i~~~~f~~v~ 326 (561)
T KOG1184|consen 248 MGKGFIPESHPHYGGVYWGAVSTPFVKEIVESADLIIFAGPLFNDY-SSGGFSYLYKKKNAIEFHSDRVKIRNATFGGVL 326 (561)
T ss_pred cccccccCcCCceeeEEecccccHhHHHHHhhcCeEEEeccccccc-ccceeEeecCccceEEEecceEEecccccccee
Confidence 79999999999999973 578999999999999999998 566566656688999999999888765555654
Q ss_pred EecCHHHHHHHHHHHhh
Q psy14417 73 IQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 73 i~~d~~~~l~~L~~~l~ 89 (120)
++.+|++|+.++.
T Consensus 327 ----mk~~l~~Lak~I~ 339 (561)
T KOG1184|consen 327 ----MKDFLQELAKRIK 339 (561)
T ss_pred ----HHHHHHHHHHhhc
Confidence 5999999998885
No 58
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.08 E-value=2.5e-10 Score=98.19 Aligned_cols=102 Identities=16% Similarity=0.086 Sum_probs=73.8
Q ss_pred CCCCCC--CCccccChHH-------HHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 3 KGVVPD--AHPNCVSAAR-------THALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 3 kg~~~~--~hp~~~G~~~-------~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|+||+ +||+|+|.+. ...+.++||||+||++++....++.+..+.+ .++||||.|+..+++.+..++.|
T Consensus 568 ~g~ipe~~~~pl~~g~~g~~~~~~~~~~~~~aDlVl~iG~rl~s~~~t~~~~~~~~-~~~I~ID~d~~~i~~~~~~~~~i 646 (1655)
T PLN02980 568 FKSFPEFELNILFVDHLDHALLSDSVRNWIQFDVVIQIGSRITSKRVSQMLEKCFP-FSYILVDKHPCRHDPSHLVTHRV 646 (1655)
T ss_pred ccccccccccccccchHHHHhCchhhhccCCCCEEEEeCCccccHHHHHHHHhCCC-CeEEEECCCCCccCCcccceEEE
Confidence 499999 8999999642 3456799999999999874223332222223 46999999999999999999999
Q ss_pred ecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHh
Q psy14417 74 QSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQ 112 (120)
Q Consensus 74 ~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~ 112 (120)
++|++.+++.|.+... . .....|.+.+..++.
T Consensus 647 ~~D~~~~l~~L~~~~~--~-----~~~~~w~~~~~~~~~ 678 (1655)
T PLN02980 647 QSNIVQFADCLLKAQF--P-----RRRSKWHGHLQALDG 678 (1655)
T ss_pred EeCHHHHHHHhhhccC--c-----chhHHHHHHHHHHHH
Confidence 9999999998876432 1 112357666655544
No 59
>PRK07586 hypothetical protein; Validated
Probab=98.43 E-value=1.2e-06 Score=68.05 Aligned_cols=75 Identities=13% Similarity=0.139 Sum_probs=50.6
Q ss_pred CCCCCCCCCCccccChHHHHhhhhcCEEEEeCCCCCcc--cccCCCC-CCCCCCeEEEEcCChhhhhhccccceEEecCH
Q psy14417 1 MGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWM--LHFGRAP-RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDV 77 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~~~~~~l~~aDlil~iG~~~~~~--~~~~~~~-~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~d~ 77 (120)
+|||+||++|+.+.|..++.++++|||||+||+++... ...+... .+..+.++++++.. .+|+
T Consensus 239 ~gkg~~~~~~~~~~~~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~d~ 304 (514)
T PRK07586 239 RGAGRPAVERLPYFAEQALAQLAGVRHLVLVGAKAPVAFFAYPGKPSRLVPEGCEVHTLAGP--------------GEDA 304 (514)
T ss_pred cCCCCCCcccccchHHHHHHHHhcCCEEEEECCCCcccccccCCCccccCCCCceEEEECCC--------------cccH
Confidence 38999999998877777788999999999999986321 0011111 12223445544311 2799
Q ss_pred HHHHHHHHHHhh
Q psy14417 78 RLTVQQLKQMLS 89 (120)
Q Consensus 78 ~~~l~~L~~~l~ 89 (120)
+.+|++|++.+.
T Consensus 305 ~~~l~~L~~~l~ 316 (514)
T PRK07586 305 AAALEALADALG 316 (514)
T ss_pred HHHHHHHHHhhc
Confidence 999999988765
No 60
>PRK12474 hypothetical protein; Provisional
Probab=98.39 E-value=1.9e-06 Score=67.02 Aligned_cols=74 Identities=20% Similarity=0.270 Sum_probs=50.8
Q ss_pred CCCCCCCC-CCccccChHHHHhhhhcCEEEEeCCCCCcc--cccCCCC-CCCCCCeEEEEcCChhhhhhccccceEEecC
Q psy14417 1 MGKGVVPD-AHPNCVSAARTHALQNADLVLLLGARLNWM--LHFGRAP-RFKSNVKIIQVDLNAEELHNSVQAAVAIQSD 76 (120)
Q Consensus 1 ~~kg~~~~-~hp~~~G~~~~~~l~~aDlil~iG~~~~~~--~~~~~~~-~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~d 76 (120)
+|||+||+ +||++.+ ...+++++|||||++|+++... ...+... .+++..++++++.. .+|
T Consensus 243 ~gkg~~~~~~~~~~~~-~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------------~~d 307 (518)
T PRK12474 243 RGAGRVPIERIPYFHE-QITAFLKDVEQLVLVGAKPPVSFFAYPGKPSWGAPPGCEIVYLAQP--------------DED 307 (518)
T ss_pred CCCCCCCCcccccchH-HHHHHHhhCCEEEEECCCCCccccccCCCccccCCCCCEEEEECCC--------------CcC
Confidence 48999995 6687744 4567899999999999996421 1111111 23345778888741 168
Q ss_pred HHHHHHHHHHHhh
Q psy14417 77 VRLTVQQLKQMLS 89 (120)
Q Consensus 77 ~~~~l~~L~~~l~ 89 (120)
++.+|++|++.+.
T Consensus 308 ~~~~l~~L~~~l~ 320 (518)
T PRK12474 308 LAQALQDLADAVD 320 (518)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988764
No 61
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=98.24 E-value=7.9e-07 Score=62.87 Aligned_cols=67 Identities=19% Similarity=0.210 Sum_probs=48.2
Q ss_pred HHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEEecCHHHHHHHH
Q psy14417 18 RTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQL 84 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~~l~~L 84 (120)
+.+.+++||++|+||+++..++..+.......++++|.||.++.........++.+.|++.++|+.|
T Consensus 169 ~~~~~~~aDlllvvGTSl~V~pa~~l~~~~~~~~~~v~iN~~~~~~~~~~~~d~~~~~~~~~~l~~~ 235 (235)
T cd01408 169 MEEDKEEADLLIVIGTSLKVAPFASLPSRVPSEVPRVLINREPVGHLGKRPFDVALLGDCDDGVREL 235 (235)
T ss_pred HHHHHhcCCEEEEECCCCeeccHHHHHHHHhCCCcEEEEeCCCCCCCCCCCcCEEEeCCHHHHHHhC
Confidence 4466889999999999987654322111122467899999998765422457899999999999865
No 62
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=97.95 E-value=1.1e-05 Score=57.30 Aligned_cols=68 Identities=19% Similarity=0.215 Sum_probs=51.8
Q ss_pred HHHhhhhcCEEEEeCCCCCcccccCCCC--CCCCCCeEEEEcCChhhhhhccccceEEecCHHHHHHHHHHHh
Q psy14417 18 RTHALQNADLVLLLGARLNWMLHFGRAP--RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQML 88 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~~~~~~~--~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~~l~~L~~~l 88 (120)
+.+.+++||++|+||+++...+... +. ....+.++|.||.++..+.. ..++.+.+++.++|+.|.+.+
T Consensus 172 ~~~~~~~aDl~lviGTSl~V~pa~~-l~~~~~~~g~~~i~iN~~~t~~d~--~~~~~i~~~~~~~l~~l~~~~ 241 (244)
T PRK14138 172 AIRLSSKASLMIVMGSSLVVYPAAE-LPLITVRSGGKLVIVNLGETPLDD--IATLKYNMDVVEFANRVMSEG 241 (244)
T ss_pred HHHHHhcCCEEEEeCcCCeeecHhH-HHHHHHHcCCeEEEEcCCCCCCCc--ceeEEEeCCHHHHHHHHHHHh
Confidence 4567789999999999987654222 21 11247889999998877664 368899999999999998754
No 63
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=97.80 E-value=2.6e-05 Score=56.67 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=52.2
Q ss_pred HHHhhhhcCEEEEeCCCCCcccccCCCCC-CCCCCeEEEEcCChhhhhhccccceEEecCHHHHHHHHHHHhh
Q psy14417 18 RTHALQNADLVLLLGARLNWMLHFGRAPR-FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~~~~~~~~-~~~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~~l~~L~~~l~ 89 (120)
+.+.+++||++|+||+++...+....+.. ...+.++|.||.++...... .++.+.||+.++|+.|.+.+.
T Consensus 208 a~~~~~~~DlllvvGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~~~~~--~~~~i~g~~~evL~~l~~~l~ 278 (285)
T PRK05333 208 ARAALDAADAVLVVGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTRADPL--LTLKVEASCAQALAALVARLG 278 (285)
T ss_pred HHHHHhcCCEEEEECcCceecchhhhHHHHHHCCCeEEEECCCCCCCCcc--eeEEEeCCHHHHHHHHHHHhC
Confidence 45678899999999999976532221111 12356999999998776643 488999999999999988774
No 64
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=97.79 E-value=4.1e-05 Score=54.35 Aligned_cols=68 Identities=22% Similarity=0.315 Sum_probs=51.0
Q ss_pred HHHhhhhcCEEEEeCCCCCcccccCCCCC--CCCCCeEEEEcCChhhhhhccccceEEecCHHHHHHHHHHHh
Q psy14417 18 RTHALQNADLVLLLGARLNWMLHFGRAPR--FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQML 88 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~~~~~~~~--~~~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~~l~~L~~~l 88 (120)
+.+.+++||++|+||+++...+. ..... ..+++++|.||.++..+... .++.+.+|+.++|+.|.+.+
T Consensus 171 a~~~~~~~dl~lviGTsl~V~p~-~~l~~~~~~~~~~~i~iN~~~~~~~~~--~~~~i~~~~~~~l~~l~~~~ 240 (242)
T PRK00481 171 AYEALEEADLFIVIGTSLVVYPA-AGLPYEAREHGAKTVEINLEPTPLDSL--FDLVIHGKAGEVVPELVEEL 240 (242)
T ss_pred HHHHHhcCCEEEEECCCceEcCH-hHHHHHHHHCCCeEEEECCCCCCCCCc--cCEEEECCHHHHHHHHHHHh
Confidence 45678899999999999865432 21221 23578999999999766543 68999999999999987654
No 65
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=97.70 E-value=6.1e-05 Score=53.57 Aligned_cols=70 Identities=13% Similarity=0.078 Sum_probs=51.2
Q ss_pred HHHhhhhcCEEEEeCCCCCcccccCCCC-CCCCCCeEEEEcCChhhhhhccccceEEecCHHHHHHHHHHHhh
Q psy14417 18 RTHALQNADLVLLLGARLNWMLHFGRAP-RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~~~~~~~-~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~~l~~L~~~l~ 89 (120)
..+++.+||++|+||+++...+...... ....++++|.||+++..... ..++.+.|++.++|+.|.+.+.
T Consensus 166 ~~~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~~~~~~--~~~~~i~g~~~~~l~~l~~~~~ 236 (242)
T PTZ00408 166 IESVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEEGTNYS--QFDESIYGKASVIVPAWVDRVL 236 (242)
T ss_pred HHHHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCCCCCCc--cCCEEEECCHHHHHHHHHHHHH
Confidence 3456899999999999997654322111 11247899999999866553 3467888999999999977653
No 66
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=97.62 E-value=3.1e-05 Score=55.61 Aligned_cols=62 Identities=16% Similarity=0.218 Sum_probs=45.0
Q ss_pred HHHhhhhcCEEEEeCCCCCcccccCCCC-CCCCCCeEEEEcCChhhhhhccccceEEecCHHHHH
Q psy14417 18 RTHALQNADLVLLLGARLNWMLHFGRAP-RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTV 81 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~~~~~~~-~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~~l 81 (120)
+.+.+++||++|+||+++...+...... ....++++|.||.++..... ..++.+.|++.++|
T Consensus 198 a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~~~t~~d~--~a~~~i~~~~~~~l 260 (260)
T cd01409 198 AAARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNIGPTRADH--LATLKVDARCGEVL 260 (260)
T ss_pred HHHHHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcCCCCCCCc--cccEEEeCChhhhC
Confidence 5677889999999999998654322111 12257899999999977664 36788988887654
No 67
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=97.52 E-value=8.4e-05 Score=52.08 Aligned_cols=64 Identities=20% Similarity=0.265 Sum_probs=48.0
Q ss_pred HHHhhhhcCEEEEeCCCCCcccccCCCCC--CCCCCeEEEEcCChhhhhhccccceEEecCHHHHHHHH
Q psy14417 18 RTHALQNADLVLLLGARLNWMLHFGRAPR--FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQL 84 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~~~~~~~~--~~~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~~l~~L 84 (120)
+.+.++++|++|++|+++...+. ..... ..+++++|.||.++..+. ...++.+.||+.++|+.|
T Consensus 158 ~~~~~~~~dl~lvlGTsl~v~p~-~~l~~~~~~~~~~~i~iN~~~~~~~--~~~~~~i~g~~~~~l~~l 223 (224)
T cd01412 158 AVEALAKADLFLVIGTSGVVYPA-AGLPEEAKERGARVIEINPEPTPLS--PIADFAFRGKAGEVLPAL 223 (224)
T ss_pred HHHHHHcCCEEEEECcCccchhH-HHHHHHHHHCCCeEEEECCCCCCCC--CcCCEEEECCHHHHHHHh
Confidence 45677899999999998765432 11111 135789999999988766 347889999999999886
No 68
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=97.49 E-value=0.00012 Score=52.88 Aligned_cols=69 Identities=14% Similarity=0.249 Sum_probs=50.8
Q ss_pred HHHhhhhcCEEEEeCCCCCcccccCCCCC--CCCCCeEEEEcCChhhhhhccccceEEecCHHHHHHHHHHHhh
Q psy14417 18 RTHALQNADLVLLLGARLNWMLHFGRAPR--FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~~~~~~~~--~~~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~~l~~L~~~l~ 89 (120)
+.+.+++||++|+||+++..++..+ +.. ...++++|.||+++..+.. ...++.+.|++.+++. +++.+.
T Consensus 193 a~~~~~~aDlllviGTSl~V~pa~~-l~~~a~~~g~~vi~IN~~~t~~~~-~~~d~~i~~~~~~~~~-~~~~~~ 263 (271)
T PTZ00409 193 AEKEIDKCDLLLVVGTSSSVSTATN-LCYRAHRKKKKIVEVNISKTYITN-RISDYHVRAKFSELAQ-ISDILK 263 (271)
T ss_pred HHHHHHcCCEEEEECCCCcccCHHH-HHHHHHHcCCCEEEECCCCCCCCC-ccccEEEECcHHHHHH-HHHHhc
Confidence 4567899999999999998764332 221 1347889999999876542 2368899999999985 556665
No 69
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=97.27 E-value=0.00017 Score=51.48 Aligned_cols=69 Identities=26% Similarity=0.385 Sum_probs=52.6
Q ss_pred HHHhhhhcCEEEEeCCCCCcccccCCCCC--CCCCCeEEEEcCChhhhhhccccceEEecCHHHHHHHHHHHhh
Q psy14417 18 RTHALQNADLVLLLGARLNWMLHFGRAPR--FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~~~~~~~~--~~~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~~l~~L~~~l~ 89 (120)
+.+.+++||++|++|+++..++..+ ... ...++++|.||..+..+.. ..+..+.+++..+++.|.+.+.
T Consensus 176 ~~~~~~~~d~liviGTSl~V~Paa~-~p~~~~~~g~~~i~iN~~~~~~~~--~~d~~i~~~a~~~~~~l~~~~~ 246 (250)
T COG0846 176 ALEALKEADLLIVIGTSLKVYPAAG-LPELAKRRGAKVIEINLEPTRLDP--IADEVIRGDAGEVLPLLLEELL 246 (250)
T ss_pred HHHHhccCCEEEEECcceEEcChhh-hhHHHHhcCCEEEEECCCcccCcc--hhHHHHHhhHHHHHHHHHHHhh
Confidence 4566799999999999987765444 322 2357899999998877653 3677888999999999887664
No 70
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=97.07 E-value=0.00035 Score=48.56 Aligned_cols=57 Identities=23% Similarity=0.243 Sum_probs=38.5
Q ss_pred HHHhhhhcCEEEEeCCCCCcccccCCCC-CCCCCCeEEEEcCChhhhhhccccceEEecC
Q psy14417 18 RTHALQNADLVLLLGARLNWMLHFGRAP-RFKSNVKIIQVDLNAEELHNSVQAAVAIQSD 76 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~~~~~~~-~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~d 76 (120)
+.+.+++||++|+||+++...+..+... ....++++|.||.++...... .++.+.++
T Consensus 149 a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~~~~~d~~--~d~~~~~~ 206 (206)
T cd01410 149 AAAAACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQPTPKDKL--ADLVIHGD 206 (206)
T ss_pred HHHHHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCCCCCCCcc--ccEEEeCC
Confidence 4567789999999999987654332111 112478999999998766532 45655543
No 71
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=97.07 E-value=0.0014 Score=49.03 Aligned_cols=43 Identities=21% Similarity=0.246 Sum_probs=29.0
Q ss_pred HHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCCh
Q psy14417 18 RTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNA 60 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~ 60 (120)
+.+.+++||++|+||+++..++..........++++|.||.++
T Consensus 199 a~~~~~~aDllLVIGTSL~V~Paa~l~~~a~~~~pvviIN~e~ 241 (349)
T PTZ00410 199 VHHDIPEAELLLIIGTSLQVHPFALLACVVPKDVPRVLFNLER 241 (349)
T ss_pred HHHHHHhCCEEEEECcCCcccCHHHHHHHHhcCCCEEEECccc
Confidence 4567789999999999987664322111112467888888765
No 72
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=97.04 E-value=0.0006 Score=46.06 Aligned_cols=54 Identities=26% Similarity=0.361 Sum_probs=38.1
Q ss_pred CCCCCCCCCccccCh-------HHHHhh---hhcCEEEEeCCCCCcccccC--CCCCCCCCCeEEEEcCC
Q psy14417 2 GKGVVPDAHPNCVSA-------ARTHAL---QNADLVLLLGARLNWMLHFG--RAPRFKSNVKIIQVDLN 59 (120)
Q Consensus 2 ~kg~~~~~hp~~~G~-------~~~~~l---~~aDlil~iG~~~~~~~~~~--~~~~~~~~~~vi~Id~d 59 (120)
+||++|+ |+++|. ...+.+ .++||||.+|+++... ... ....|.+ .+.|.|+..
T Consensus 78 ~kgv~~~--~~~lg~lg~~~~~p~~e~~~g~~~~DlvlfvG~~~~~~-~~~l~~lk~f~~-~~~~~~~~~ 143 (171)
T PRK00945 78 DKGVDAK--YINLHELTNYLKDPNWKGLDGNGNYDLVIFIGVTYYYA-SQGLSALKHFSP-LKTITIDRY 143 (171)
T ss_pred cCCccCC--cccHHHHHhhccCchhhhhcCCCCcCEEEEecCCchhH-HHHHHHHhhcCC-ceEEEecCC
Confidence 7999988 988885 345677 7999999999998642 111 1344555 778888743
No 73
>KOG2682|consensus
Probab=96.83 E-value=0.0029 Score=44.90 Aligned_cols=66 Identities=21% Similarity=0.253 Sum_probs=48.0
Q ss_pred hhcCEEEEeCCCCCcccccCCC-CCCCCCCeEEEEcCChhh--hhhccccceEEecCHHHHHHHHHHHhh
Q psy14417 23 QNADLVLLLGARLNWMLHFGRA-PRFKSNVKIIQVDLNAEE--LHNSVQAAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 23 ~~aDlil~iG~~~~~~~~~~~~-~~~~~~~~vi~Id~d~~~--i~~~~~~~~~i~~d~~~~l~~L~~~l~ 89 (120)
.-+|++|++|+++...+ +... ...+...+-+.||.++.- .+...+.|+.+.||+...+++|.+.+.
T Consensus 211 ~~~dl~lV~GTSL~V~P-FAsLpe~vp~~v~RlLiNre~~Gp~~~~~r~rDv~~lgd~d~~~eaLvelLG 279 (314)
T KOG2682|consen 211 LKVDLLLVMGTSLQVQP-FASLPEKVPLSVPRLLINREKAGPFLGMIRYRDVAWLGDCDQGVEALVELLG 279 (314)
T ss_pred cccceEEEeccceeeee-cccchhhhhhcCceeEecccccCccccCcccccchhhccHHHHHHHHHHHhC
Confidence 46899999999997654 2222 223345667778877643 344456899999999999999998885
No 74
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=96.50 E-value=0.0011 Score=46.66 Aligned_cols=56 Identities=18% Similarity=0.342 Sum_probs=37.8
Q ss_pred HHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEEec
Q psy14417 18 RTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQS 75 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~ 75 (120)
+.+.++++|++|+||+++...+..........++++|.||.++..+... .++.+.|
T Consensus 165 ~~~~~~~~DlllviGTSl~v~p~~~l~~~~~~~~~~i~iN~~~~~~~~~--~~~~~~~ 220 (225)
T cd01411 165 AIQAIEKADLLVIVGTSFVVYPFAGLIDYRQAGANLIAINKEPTQLDSP--ATLVIKD 220 (225)
T ss_pred HHHHHhcCCEEEEECcCCeehhHHHHHHHHhCCCeEEEECCCCCCCCcc--hhehhcc
Confidence 4567889999999999886553222111122478999999998776543 4555555
No 75
>KOG1905|consensus
Probab=96.42 E-value=0.0085 Score=43.81 Aligned_cols=69 Identities=32% Similarity=0.392 Sum_probs=52.7
Q ss_pred HHHhhhhcCEEEEeCCCCCcccccCCCC--CCCCCCeEEEEcCChhhhhhccccceEEecCHHHHHHHHHHHhh
Q psy14417 18 RTHALQNADLVLLLGARLNWMLHFGRAP--RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~~~~~~~--~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~~l~~L~~~l~ 89 (120)
+.++.++||++|++|+++.-.+ .|.+. ....+.+++-||..+..-. ..+++.|.|++..++..|.+.|.
T Consensus 210 a~~a~~~Ad~~lcLGTSLqI~p-~g~lpl~~~k~g~K~~ivNlQ~T~hD--k~A~l~Ihg~vd~Vm~~lm~~Lg 280 (353)
T KOG1905|consen 210 ATKAAKRADLILCLGTSLQILP-KGNLPLKMKKRGGKIVIVNLQWTPHD--KIANLKIHGKVDLVMASLMELLG 280 (353)
T ss_pred HHHHhhhcceEEEeccceEeee-CCCcchhHhccCceEEEEeCccCccc--chhheeehhhHHHHHHHHHHHhC
Confidence 5677899999999999997653 33332 1234678999998876544 35789999999999999998773
No 76
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=96.40 E-value=0.0024 Score=44.77 Aligned_cols=54 Identities=24% Similarity=0.306 Sum_probs=36.0
Q ss_pred HHHhhhhcCEEEEeCCCCCcccccCCCCCC--CCCCeEEEEcCChhhhhhccccceEEe
Q psy14417 18 RTHALQNADLVLLLGARLNWMLHFGRAPRF--KSNVKIIQVDLNAEELHNSVQAAVAIQ 74 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~~~~~~~~~--~~~~~vi~Id~d~~~i~~~~~~~~~i~ 74 (120)
+.+.+++||++|+||+++...+... +... ..++++|.||.++...... .++.+.
T Consensus 165 a~~~~~~~Dl~lvvGTSl~V~p~~~-l~~~a~~~g~~~i~iN~~~~~~~~~--~~~~i~ 220 (222)
T cd01413 165 AIEAAKEADLFIVLGSSLVVYPANL-LPLIAKENGAKLVIVNADETPFDYI--ADLVIQ 220 (222)
T ss_pred HHHHHhcCCEEEEEccCCEeccHhH-HHHHHHHcCCeEEEEcCCCCCCCcc--eeEEEe
Confidence 4567789999999999987654322 2211 2478899999998655432 344443
No 77
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=96.26 E-value=0.0028 Score=44.24 Aligned_cols=57 Identities=23% Similarity=0.342 Sum_probs=37.4
Q ss_pred HHHhhhhcCEEEEeCCCCCcccccCCCCCC-CCCCeEEEEcCChhhhhhccccceEEecC
Q psy14417 18 RTHALQNADLVLLLGARLNWMLHFGRAPRF-KSNVKIIQVDLNAEELHNSVQAAVAIQSD 76 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~~~~~~~~~-~~~~~vi~Id~d~~~i~~~~~~~~~i~~d 76 (120)
+.+.++++|++|+||+++...+........ ..++++|.||.++..... ..++.+.||
T Consensus 161 a~~~~~~~Dl~lvlGTSl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~~--~~d~~~~~~ 218 (218)
T cd01407 161 AAEALAKADLLLVIGTSLQVYPAAGLPLYAPERGAPVVIINLEPTPADR--KADLVILGD 218 (218)
T ss_pred HHHHHhcCCEEEEeCCCcccccHHHHHHHHHHCCCeEEEECCCCCCCCc--cceEEEeCC
Confidence 456678899999999998765322211111 247899999999876652 345666553
No 78
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=95.46 E-value=0.0089 Score=41.55 Aligned_cols=58 Identities=21% Similarity=0.224 Sum_probs=36.1
Q ss_pred HHHhhhhcCEEEEeCCCCCcccccCCCCCC-CCCCeEEEEcCChhhhhhccccceEEec
Q psy14417 18 RTHALQNADLVLLLGARLNWMLHFGRAPRF-KSNVKIIQVDLNAEELHNSVQAAVAIQS 75 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~~~~~~~~~-~~~~~vi~Id~d~~~i~~~~~~~~~i~~ 75 (120)
+.+.+.++|++|++|+++.+.+........ ..+.+++.|+.++.........++.+.|
T Consensus 163 ~~~~~~~~d~llviGtSl~v~~~~~l~~~~~~~~~~~~~in~~~~~~~~~~~~~~~~~~ 221 (222)
T cd00296 163 ALEALLEADLVLVIGTSLTVYPAARLLLRAPERGAPVVIINREPTPADALKKADLVILG 221 (222)
T ss_pred HHHHHhcCCEEEEECCCccccCHHHHHHHHHHCCCcEEEECCCCCCCCCCCcceEEEeC
Confidence 345667899999999999875322111111 2477899999998765421224444433
No 79
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=95.13 E-value=0.015 Score=39.00 Aligned_cols=52 Identities=21% Similarity=0.317 Sum_probs=35.5
Q ss_pred CCCCCCCCCccccCh-------HHHHhh---hhcCEEEEeCCCCCcccccC--CCCCCCCCCeEEEEc
Q psy14417 2 GKGVVPDAHPNCVSA-------ARTHAL---QNADLVLLLGARLNWMLHFG--RAPRFKSNVKIIQVD 57 (120)
Q Consensus 2 ~kg~~~~~hp~~~G~-------~~~~~l---~~aDlil~iG~~~~~~~~~~--~~~~~~~~~~vi~Id 57 (120)
.||++ +||.++|. ...+.+ .++||||.+|+++... ... ....|. +.++|.|+
T Consensus 70 ~kgv~--~~~~~lg~~g~~~~~p~~e~~~g~g~~DlvlfvG~~~y~~-~~~ls~lk~f~-~~~~i~l~ 133 (162)
T TIGR00315 70 EAGIE--SEEMNLHEITQFLADPSWEGFDGEGNYDLVLFLGIIYYYL-SQMLSSLKHFS-HIVTIAID 133 (162)
T ss_pred cCCee--cCCCCHHHHHHhccCchhhhccCCCCcCEEEEeCCcchHH-HHHHHHHHhhc-CcEEEEec
Confidence 37887 77888875 345777 8999999999988421 111 123355 67888887
No 80
>TIGR00300 conserved hypothetical protein TIGR00300. All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family.
Probab=93.69 E-value=0.12 Score=39.16 Aligned_cols=68 Identities=32% Similarity=0.439 Sum_probs=52.4
Q ss_pred HHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhh----ccccceEEecCHHHHHHHHHHHhh
Q psy14417 19 THALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHN----SVQAAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 19 ~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~----~~~~~~~i~~d~~~~l~~L~~~l~ 89 (120)
.+.++.+|+||++.+-+... .+|+. .+...+++-||++|....+ .....+.++.|+..|+..|.+.+.
T Consensus 334 R~~~~~a~~vimlaTmLHSI-AtGNm--~Ps~v~~~cVDInp~~VtKL~DRGs~qa~giVTdvg~Fl~~L~~~l~ 405 (407)
T TIGR00300 334 RELLQGADMVLMLSTMLHSI-AVGNL--LPSGVKTICVDINPAVVTKLSDRGSSQAVGVVTDVGLFLPLLVRQIK 405 (407)
T ss_pred HHHhccCCeehhHHHHHHHH-hhccc--ccccceEEEEECCHHHhhhhhccCceeEEEEEecHHHHHHHHHHHHh
Confidence 46788999999999888654 45543 2334589999999987664 234578999999999999988764
No 81
>KOG2684|consensus
Probab=93.46 E-value=0.087 Score=40.07 Aligned_cols=65 Identities=18% Similarity=0.231 Sum_probs=43.4
Q ss_pred hhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEEecCHHHHHHHHHHHhh
Q psy14417 22 LQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 22 l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~~l~~L~~~l~ 89 (120)
...+||+|++|+++-..++..-...++.....|.|+.++.. +...++.+.+|+..+...+...+.
T Consensus 278 ~d~~DllIviGTSLKV~pV~~iv~~~~~~vpqIliNr~~v~---h~efd~~ll~~CD~v~~~l~~~~g 342 (412)
T KOG2684|consen 278 LDECDLLIVIGTSLKVRPVAEIVKSFPAKVPQILINRDPVP---HAEFDVELLGDCDDVIRLLCQKCG 342 (412)
T ss_pred ccccceEEEeCCccccccHHHHHhhhcccCcEEEecCcccc---ccccChhhccchHHHHHHHHhhcc
Confidence 44679999999998654322212334555667778877432 234677888899998888876653
No 82
>COG1915 Uncharacterized conserved protein [Function unknown]
Probab=92.12 E-value=0.092 Score=38.81 Aligned_cols=68 Identities=34% Similarity=0.437 Sum_probs=53.0
Q ss_pred HHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhh----ccccceEEecCHHHHHHHHHHHhh
Q psy14417 19 THALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHN----SVQAAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 19 ~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~----~~~~~~~i~~d~~~~l~~L~~~l~ 89 (120)
.+.++.+|.||.+-+-+... .+|+ .++...+.|-+|++|+...+ ...-.+.++.|+..||..|...++
T Consensus 333 ~~~l~g~dmvlMlstMLHSI-a~GN--llPs~VKtiCVDiNPavVTKL~DRGs~qavgvVTDVGlFlplL~~elk 404 (415)
T COG1915 333 REHLQGADMVLMLSTMLHSI-AVGN--LLPSGVKTICVDINPAVVTKLSDRGSSQAVGVVTDVGLFLPLLVRELK 404 (415)
T ss_pred HHHhccCccHHHHHHHHHHH-hhcC--cchhhceEEEEecChHHheecccCCccceeEEEeehhHhHHHHHHHHH
Confidence 47889999999998766544 3443 34557899999999987653 334578999999999999998886
No 83
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=91.80 E-value=0.4 Score=35.54 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=42.7
Q ss_pred hcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhh-hhhccccceEEecCHHHHHHHHHHHhh
Q psy14417 24 NADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEE-LHNSVQAAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 24 ~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~-i~~~~~~~~~i~~d~~~~l~~L~~~l~ 89 (120)
.-||.|++|-+=......| ......||-||.||.. |- ...|+.|+||+.++|+.|++.++
T Consensus 252 ~P~lYiA~GISGaiQH~~G----m~~s~~IVAIN~Dp~APIF--~~ADygiVgD~~eilP~L~e~l~ 312 (313)
T PRK03363 252 KPELYLAVGISGQIQHMVG----ANASQTIFAINKDKNAPIF--QYADYGIVGDAVKILPALTAALA 312 (313)
T ss_pred CccEEEEEccccHHHHHhh----cccCCEEEEEcCCCCCCch--hhCCeeEeeeHHHHHHHHHHHhh
Confidence 4589999997743321112 2234569999999854 22 24799999999999999998874
No 84
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=91.60 E-value=0.41 Score=35.45 Aligned_cols=60 Identities=22% Similarity=0.224 Sum_probs=42.7
Q ss_pred hcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhh-hhhccccceEEecCHHHHHHHHHHHhh
Q psy14417 24 NADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEE-LHNSVQAAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 24 ~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~-i~~~~~~~~~i~~d~~~~l~~L~~~l~ 89 (120)
.-||.|++|-+=......| ......||-||.|+.. |- ...|+.|+||+.+++++|++.++
T Consensus 251 ~P~lYiA~GISGAiQH~aG----m~~s~~IVAIN~Dp~APIF--~~ADygiVgD~~~vlP~L~e~l~ 311 (312)
T PRK11916 251 KSDLYLTLGISGQIQHMVG----GNGAKVIVAINKDKNAPIF--NYADYGLVGDIYKVVPALISQLS 311 (312)
T ss_pred CccEEEEeccccHHHHHhh----cccCCEEEEECCCCCCCch--hhCCeeEeeeHHHHHHHHHHHhh
Confidence 4589999997743321112 2234569999999854 22 24799999999999999998874
No 85
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=91.35 E-value=0.48 Score=35.75 Aligned_cols=60 Identities=18% Similarity=0.285 Sum_probs=43.2
Q ss_pred hcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhh-hhhccccceEEecCHHHHHHHHHHHhh
Q psy14417 24 NADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEE-LHNSVQAAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 24 ~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~-i~~~~~~~~~i~~d~~~~l~~L~~~l~ 89 (120)
.-||.|++|.+=... ...+ ......||-||.|+.. |- ...|+.|+||+.++++.|++.++
T Consensus 293 ~P~lYIA~GISGAiQ-H~~G---m~~s~~IVAIN~D~~APIF--~~ADygIVgD~~evlP~Lie~lk 353 (356)
T PLN00022 293 APELYIAVGISGAIQ-HLAG---MKDSKVIVAINKDADAPIF--QVADYGLVADLFEAVPELLEKLP 353 (356)
T ss_pred CCcEEEEEecchHHH-HHhh---cccCCEEEEECCCCCCCch--hhcCeeEeeeHHHHHHHHHHHHH
Confidence 468999999774322 1111 2234569999999854 32 24799999999999999999886
No 86
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=88.72 E-value=1 Score=33.41 Aligned_cols=60 Identities=20% Similarity=0.216 Sum_probs=43.1
Q ss_pred hcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhh-hhhccccceEEecCHHHHHHHHHHHhh
Q psy14417 24 NADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEE-LHNSVQAAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 24 ~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~-i~~~~~~~~~i~~d~~~~l~~L~~~l~ 89 (120)
.-||-|++|-+=--....| ......||-||.|+.. |- ...|+.|+||...++++|.+.+.
T Consensus 251 ~P~LYIA~GISGAiQHlaG----m~~Sk~IVAINkD~nAPIF--~~ADyGiVgDl~~ivP~Lie~l~ 311 (313)
T COG2025 251 APKLYIALGISGAIQHLAG----MKDSKVIVAINKDPNAPIF--QVADYGIVGDLFKIVPALIEALK 311 (313)
T ss_pred cccEEEEEecccHHHHHhh----cccCcEEEEEcCCCCCCcc--ccCCeeeeeeHHHHHHHHHHHHh
Confidence 5789999997643221111 2234578999999854 32 24899999999999999999886
No 87
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=81.97 E-value=1.2 Score=34.54 Aligned_cols=45 Identities=20% Similarity=0.116 Sum_probs=29.7
Q ss_pred hhhhcCEEEEeCCCCCcccc--c-CCC-CCCCCCCeEEEEcCChhhhhh
Q psy14417 21 ALQNADLVLLLGARLNWMLH--F-GRA-PRFKSNVKIIQVDLNAEELHN 65 (120)
Q Consensus 21 ~l~~aDlil~iG~~~~~~~~--~-~~~-~~~~~~~~vi~Id~d~~~i~~ 65 (120)
-+++||+||++|+.+.+... . ..+ .....++++|.||+.......
T Consensus 157 d~~~ad~Il~~G~n~~~~~~~~~~~~~~~ar~~g~klividpr~s~ta~ 205 (477)
T cd02759 157 DWENPECIVLWGKNPLNSNLDLQGHWLVAAMKRGAKLIVVDPRLTWLAA 205 (477)
T ss_pred hhhcCCEEEEEccChhhhCcHHHHHHHHHHHHCCCEEEEECCCCChhhH
Confidence 35799999999998754311 0 001 111246899999998877664
No 88
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=78.13 E-value=6.7 Score=29.57 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=27.3
Q ss_pred hhcCEEEEeCCCCCcccc-cC-CC----CC-----CCCCCeEEEEcCChhhhhh
Q psy14417 23 QNADLVLLLGARLNWMLH-FG-RA----PR-----FKSNVKIIQVDLNAEELHN 65 (120)
Q Consensus 23 ~~aDlil~iG~~~~~~~~-~~-~~----~~-----~~~~~~vi~Id~d~~~i~~ 65 (120)
.+||+||++|+++.+... .. .+ .. ...++++|.||+.......
T Consensus 130 ~~ad~il~~G~n~~~~~p~~~~~~~~~~~~~~~~~~~~g~kli~idp~~t~ta~ 183 (415)
T cd02761 130 NRADVIVYWGTNPMHAHPRHMSRYSVFPRGFFREGGREDRTLIVVDPRKSDTAK 183 (415)
T ss_pred hcCCEEEEEcCCccccccHHhhhhhhhhhhhccccCCCCCEEEEEcCCCcchhh
Confidence 479999999998754311 00 00 00 0246799999988776643
No 89
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=76.47 E-value=3.3 Score=32.47 Aligned_cols=45 Identities=18% Similarity=0.156 Sum_probs=30.2
Q ss_pred HhhhhcCEEEEeCCCCCcccccCCCC----CCCCCCeEEEEcCChhhhhh
Q psy14417 20 HALQNADLVLLLGARLNWMLHFGRAP----RFKSNVKIIQVDLNAEELHN 65 (120)
Q Consensus 20 ~~l~~aDlil~iG~~~~~~~~~~~~~----~~~~~~~vi~Id~d~~~i~~ 65 (120)
.-+++||+||++|+.+.+... ..+. ....++++|.||+.......
T Consensus 153 ~d~~~ad~il~~G~Np~~s~p-~~~~~~~~a~~~GaklivvDPr~t~ta~ 201 (501)
T cd02766 153 EDMVNADLIVIWGINPAATNI-HLMRIIQEARKRGAKVVVIDPYRTATAA 201 (501)
T ss_pred HHHhcCCEEEEECCChhhhch-hHHHHHHHHHHCCCEEEEECCCCCccHH
Confidence 456899999999998754311 1111 11247899999998877654
No 90
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=76.17 E-value=5.8 Score=32.70 Aligned_cols=45 Identities=11% Similarity=0.181 Sum_probs=29.5
Q ss_pred hhhhcCEEEEeCCCCCcccccCC---C-CCC-CCCCeEEEEcCChhhhhh
Q psy14417 21 ALQNADLVLLLGARLNWMLHFGR---A-PRF-KSNVKIIQVDLNAEELHN 65 (120)
Q Consensus 21 ~l~~aDlil~iG~~~~~~~~~~~---~-~~~-~~~~~vi~Id~d~~~i~~ 65 (120)
-+++||+||++|+.+.+...... + ... ..++++|.||+.......
T Consensus 193 D~~~ad~Il~~G~N~~~~~~~~~~~~~~~a~~~~G~kiivIDPr~s~ta~ 242 (759)
T PRK15488 193 DLANSKYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFEPRFSVVAS 242 (759)
T ss_pred CHhhCcEEEEeccChHhcCCcHHHHHHHHHHHhCCCEEEEECCCCCcchh
Confidence 46899999999988643211111 1 111 257899999998877654
No 91
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=75.46 E-value=3.8 Score=31.72 Aligned_cols=45 Identities=16% Similarity=0.160 Sum_probs=29.8
Q ss_pred HhhhhcCEEEEeCCCCCcccccCCCCCC----CCCCeEEEEcCChhhhhh
Q psy14417 20 HALQNADLVLLLGARLNWMLHFGRAPRF----KSNVKIIQVDLNAEELHN 65 (120)
Q Consensus 20 ~~l~~aDlil~iG~~~~~~~~~~~~~~~----~~~~~vi~Id~d~~~i~~ 65 (120)
.-+++||+||++|+.+.+.. ......+ ..++++|.||+.......
T Consensus 166 ~d~~~ad~il~~G~N~~~~~-~~~~~~l~~ar~~GaklividPr~s~ta~ 214 (461)
T cd02750 166 ADWYNADYIIMWGSNVPVTR-TPDAHFLTEARYNGAKVVVVSPDYSPSAK 214 (461)
T ss_pred hHHhcCcEEEEECCChHHcc-CchHHHHHHHHHCCCEEEEEcCCCCcchh
Confidence 34689999999999875421 1111111 247899999998877654
No 92
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=75.38 E-value=2.6 Score=31.47 Aligned_cols=44 Identities=27% Similarity=0.385 Sum_probs=27.9
Q ss_pred HhhhhcCEEEEeCCCCCcccc-cC-CC-CCCC-CCCeEEEEcCChhhh
Q psy14417 20 HALQNADLVLLLGARLNWMLH-FG-RA-PRFK-SNVKIIQVDLNAEEL 63 (120)
Q Consensus 20 ~~l~~aDlil~iG~~~~~~~~-~~-~~-~~~~-~~~~vi~Id~d~~~i 63 (120)
.-+++||+||++|+.+.+... .. .. .... .++++|.||+.....
T Consensus 144 ~di~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~g~kli~idp~~t~~ 191 (386)
T cd02768 144 AEIEEADAVLLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIGPKDTDL 191 (386)
T ss_pred HHHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCeEEEECCCcccc
Confidence 346799999999998754211 00 00 1112 378999999887655
No 93
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=74.39 E-value=7.3 Score=29.35 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=26.2
Q ss_pred hhcCEEEEeCCCCCcccc-cC-CC--------CCC-CCCCeEEEEcCChhhhh
Q psy14417 23 QNADLVLLLGARLNWMLH-FG-RA--------PRF-KSNVKIIQVDLNAEELH 64 (120)
Q Consensus 23 ~~aDlil~iG~~~~~~~~-~~-~~--------~~~-~~~~~vi~Id~d~~~i~ 64 (120)
.+||+||++|+++.+... .. .+ ... ..++++|.||+......
T Consensus 136 ~~ad~il~~G~n~~~~~p~~~~r~~~~~~~~~~~~~~~g~~lividp~~s~t~ 188 (421)
T TIGR03129 136 NRADVIIYWGTNPMHAHPRHMSRYSVFPRGFFTQRGREDRTVIVVDPRKTDTA 188 (421)
T ss_pred hcCCEEEEEccCccccCchHHhhhhhhhhhhhhhcccCCCEEEEECCCCCCcc
Confidence 479999999998754210 00 00 001 34578999998776654
No 94
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=73.90 E-value=4.1 Score=34.02 Aligned_cols=68 Identities=18% Similarity=0.190 Sum_probs=41.6
Q ss_pred HHhhhhcCEEEEeCCCCCcc-cccCC-C-CC-CCCCCeEEEEcCChhhhhhccccceEE---ecCHHHHHHHHHHHh
Q psy14417 19 THALQNADLVLLLGARLNWM-LHFGR-A-PR-FKSNVKIIQVDLNAEELHNSVQAAVAI---QSDVRLTVQQLKQML 88 (120)
Q Consensus 19 ~~~l~~aDlil~iG~~~~~~-~~~~~-~-~~-~~~~~~vi~Id~d~~~i~~~~~~~~~i---~~d~~~~l~~L~~~l 88 (120)
.+-++.+||||+||+...+. +.++. . .. ...++|+|-+|+...++... +++.+ -|.--..|.+++..+
T Consensus 415 i~dve~ad~vliIG~N~te~HPV~asr~kra~k~~G~KliV~D~R~~emaer--Adlf~~pkpGtd~a~l~Avakyi 489 (978)
T COG3383 415 IEDVEGADLVLIIGANPTEGHPVLASRLKRAHKLRGQKLIVIDPRKHEMAER--ADLFLHPKPGTDLAWLTAVAKYI 489 (978)
T ss_pred HHHHhhCCeEEEEcCCCCccCccHHHHHHHHHHhcCCeEEEeccchhHHHHh--hhcccCCCCCccHHHHHHHHHHH
Confidence 45688999999999987653 11110 0 01 12478999999999888752 22222 233345666666554
No 95
>KOG2683|consensus
Probab=72.78 E-value=1.5 Score=31.47 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=37.1
Q ss_pred HHHhhhhcCEEEEeCCCCCcccccCCC-CCCCCCCeEEEEcCChhhhhhccccceEEecCHHHHHHH
Q psy14417 18 RTHALQNADLVLLLGARLNWMLHFGRA-PRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQ 83 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~~~~~~-~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~~l~~ 83 (120)
..+.+.+||-+|++|+++..+..+... ...-.+.+|.-+|+-+.... ..+.+.+-..+.++|..
T Consensus 240 ~~~~v~e~dg~LvlGsSL~v~Sg~r~i~~a~~~k~pi~IvNIGpTRaD--~~a~lKl~~r~gdvl~~ 304 (305)
T KOG2683|consen 240 CMEKVKECDGFLVLGSSLMVLSGFRFIRHAHEKKKPIAIVNIGPTRAD--DMATLKLNYRIGEVLKE 304 (305)
T ss_pred HHHHHhccCceEEechhHHHHHHHHHHHHHHhhcCcEEEEecCCcchh--heeeeeecchHhhhhhc
Confidence 456789999999999998654211100 11123455666666555443 23556665666666543
No 96
>COG4531 ZnuA ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=72.36 E-value=4.8 Score=29.51 Aligned_cols=29 Identities=31% Similarity=0.475 Sum_probs=22.3
Q ss_pred CccccChHHHHhhhhcCEEEEeCCCCCcc
Q psy14417 10 HPNCVSAARTHALQNADLVLLLGARLNWM 38 (120)
Q Consensus 10 hp~~~G~~~~~~l~~aDlil~iG~~~~~~ 38 (120)
|.|.+...-.+.+++||||+-+|.++.-+
T Consensus 61 HdYsLrPSDv~rlq~Adlv~WvGp~lEaF 89 (318)
T COG4531 61 HDYSLRPSDVKRLQSADLVVWVGPDLEAF 89 (318)
T ss_pred ccccCChhHHHHhhcCCEEEEECccHHHH
Confidence 55555555678899999999999987543
No 97
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=71.54 E-value=4.9 Score=32.06 Aligned_cols=44 Identities=16% Similarity=0.147 Sum_probs=29.8
Q ss_pred hhhhcCEEEEeCCCCCcccccCCCC----CCCCCCeEEEEcCChhhhhh
Q psy14417 21 ALQNADLVLLLGARLNWMLHFGRAP----RFKSNVKIIQVDLNAEELHN 65 (120)
Q Consensus 21 ~l~~aDlil~iG~~~~~~~~~~~~~----~~~~~~~vi~Id~d~~~i~~ 65 (120)
-+.+||+||++|+.+.+... ..+. ....++++|.||+.......
T Consensus 156 D~~~ad~il~~G~Np~~s~~-~~~~~~~~a~~~GakliviDPr~s~ta~ 203 (567)
T cd02765 156 DWVNAKTIIIWGSNILETQF-QDAEFFLDARENGAKIVVIDPVYSTTAA 203 (567)
T ss_pred HHhcCcEEEEECCChHHccc-hhHHHHHHHHHcCCeEEEECCCCCcchh
Confidence 35799999999998754311 1111 11257899999998877654
No 98
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=70.31 E-value=3.5 Score=32.53 Aligned_cols=45 Identities=16% Similarity=0.107 Sum_probs=29.5
Q ss_pred hhhhcCEEEEeCCCCCcccccC-C-------C-CCCCCCCeEEEEcCChhhhhh
Q psy14417 21 ALQNADLVLLLGARLNWMLHFG-R-------A-PRFKSNVKIIQVDLNAEELHN 65 (120)
Q Consensus 21 ~l~~aDlil~iG~~~~~~~~~~-~-------~-~~~~~~~~vi~Id~d~~~i~~ 65 (120)
-+++||+||++|+.+.+..... . . .....++++|.||+.......
T Consensus 153 D~~~ad~il~~G~N~~~s~~~~~~~~~~~~~~~~a~~~G~kliviDPr~t~ta~ 206 (539)
T cd02762 153 DIDRTDYLLILGANPLQSNGSLRTAPDRVLRLKAAKDRGGSLVVIDPRRTETAK 206 (539)
T ss_pred hhhhCCEEEEEecChHhhCCccccccCHHHHHHHHHhCCCEEEEECCCCchhhH
Confidence 3588999999999875431110 0 0 011247899999998877654
No 99
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=68.46 E-value=2.9 Score=34.11 Aligned_cols=45 Identities=20% Similarity=0.168 Sum_probs=29.1
Q ss_pred hhhhcCEEEEeCCCCCcccc-cC-CC-CCCCC-CCeEEEEcCChhhhhh
Q psy14417 21 ALQNADLVLLLGARLNWMLH-FG-RA-PRFKS-NVKIIQVDLNAEELHN 65 (120)
Q Consensus 21 ~l~~aDlil~iG~~~~~~~~-~~-~~-~~~~~-~~~vi~Id~d~~~i~~ 65 (120)
-+++||+||++|+...+... .. .. ..... ++++|.||+.......
T Consensus 166 Di~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR~t~Ta~ 214 (649)
T cd02752 166 DIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRFTRTAA 214 (649)
T ss_pred HHhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCCCCchhH
Confidence 36889999999998754211 11 11 11122 7899999998876654
No 100
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=68.38 E-value=3.1 Score=34.44 Aligned_cols=45 Identities=22% Similarity=0.311 Sum_probs=28.2
Q ss_pred HhhhhcCEEEEeCCCCCcccc-cC-CC-CCCCCCCeEEEEcCChhhhh
Q psy14417 20 HALQNADLVLLLGARLNWMLH-FG-RA-PRFKSNVKIIQVDLNAEELH 64 (120)
Q Consensus 20 ~~l~~aDlil~iG~~~~~~~~-~~-~~-~~~~~~~~vi~Id~d~~~i~ 64 (120)
.-+++||+||++|+.+.+... .. .. .....++++|.||+......
T Consensus 366 ~Di~~ad~Il~~G~N~~~~~p~~~~~i~~a~~~G~klividpr~t~~~ 413 (776)
T PRK09129 366 AELSNLDAVLVVGSNLRKEHPLLAARLRQAAKNGAKLSAINPVDDDFL 413 (776)
T ss_pred HHHHhCCEEEEEecCcchhcHHHHHHHHHHHHCCCeEEEecCCccccc
Confidence 346889999999998754311 11 00 01124779999998766543
No 101
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=67.57 E-value=19 Score=28.48 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=37.8
Q ss_pred hhhhcCEEEEeCCCCCcccccCCC--C----CCCCCCeEEEEcCChhhhhhccccceEE---ecCHHHHHHHHHHHh
Q psy14417 21 ALQNADLVLLLGARLNWMLHFGRA--P----RFKSNVKIIQVDLNAEELHNSVQAAVAI---QSDVRLTVQQLKQML 88 (120)
Q Consensus 21 ~l~~aDlil~iG~~~~~~~~~~~~--~----~~~~~~~vi~Id~d~~~i~~~~~~~~~i---~~d~~~~l~~L~~~l 88 (120)
-+++||+||++|+.+.+. ..... . ....++++|.||+........ ++.-| -|.-.+++-+|+..+
T Consensus 159 D~~~a~~Il~~G~n~~~t-~~~~~~~~~~~~a~~~gakliviDPr~s~ta~~--AD~~l~i~PGtD~al~lama~~i 232 (523)
T cd02757 159 DYANAKYILFFGADPLES-NRQNPHAQRIWGGKMDQAKVVVVDPRLSNTAAK--ADEWLPIKPGEDGALALAIAHVI 232 (523)
T ss_pred chhcCcEEEEECCChHHh-CCCcHHHHHHHHHHHCCCEEEEECCCCChhhHh--cCEeeCCCCCcHHHHHHHHHHHH
Confidence 368999999999886542 11101 0 112578999999988776542 22222 233445555555443
No 102
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=65.75 E-value=6.5 Score=30.35 Aligned_cols=45 Identities=24% Similarity=0.362 Sum_probs=29.4
Q ss_pred hhhhcCEEEEeCCCCCcccccCCC----CCCCCCCeEEEEcCChhhhhh
Q psy14417 21 ALQNADLVLLLGARLNWMLHFGRA----PRFKSNVKIIQVDLNAEELHN 65 (120)
Q Consensus 21 ~l~~aDlil~iG~~~~~~~~~~~~----~~~~~~~~vi~Id~d~~~i~~ 65 (120)
-+++||+||++|+.+.+....... .....+.++|.||+.......
T Consensus 153 d~~~ad~il~~G~n~~~~~~~~~~~~~~~a~~~g~kiivIdPr~t~ta~ 201 (454)
T cd02755 153 DFENARYIILFGRNLAEAIIVVDARRLMKALENGAKVVVVDPRFSELAS 201 (454)
T ss_pred chhcCCEEEEECcCcccccccHHHHHHHHHHHCCCeEEEECCCCChhhH
Confidence 467899999999987543111001 111246799999998876654
No 103
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=65.27 E-value=6.1 Score=30.86 Aligned_cols=46 Identities=22% Similarity=0.296 Sum_probs=29.4
Q ss_pred HhhhhcCEEEEeCCCCCcccccC--CC-CCCCCCCeEEEEcCChhhhhh
Q psy14417 20 HALQNADLVLLLGARLNWMLHFG--RA-PRFKSNVKIIQVDLNAEELHN 65 (120)
Q Consensus 20 ~~l~~aDlil~iG~~~~~~~~~~--~~-~~~~~~~~vi~Id~d~~~i~~ 65 (120)
.-+++||+||++|+.+.+..... .. .....++++|.||+.......
T Consensus 152 ~d~~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~k~i~Idp~~s~ta~ 200 (512)
T cd02753 152 ADIEEADVILVIGSNTTEAHPVIARRIKRAKRNGAKLIVADPRRTELAR 200 (512)
T ss_pred HHHHhCCEEEEECCChhhhhHHHHHHHHHHHHCCCeEEEEcCCCccchH
Confidence 34689999999999875421100 00 111347899999988876543
No 104
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=64.96 E-value=8.9 Score=32.08 Aligned_cols=44 Identities=20% Similarity=0.318 Sum_probs=27.9
Q ss_pred hhhhcCEEEEeCCCCCccccc--CCC--CCC-CCCCeEEEEcCChhhhh
Q psy14417 21 ALQNADLVLLLGARLNWMLHF--GRA--PRF-KSNVKIIQVDLNAEELH 64 (120)
Q Consensus 21 ~l~~aDlil~iG~~~~~~~~~--~~~--~~~-~~~~~vi~Id~d~~~i~ 64 (120)
-+.+||+||++|+.+.+.... ... ... ..++++|.||+......
T Consensus 203 Di~~a~~il~~G~Np~~~~p~~~~~i~~a~~~~~G~kiiviDPr~t~ta 251 (830)
T PRK13532 203 DIEAADAFVLWGSNMAEMHPILWSRVTDRRLSNPDVKVAVLSTFEHRSF 251 (830)
T ss_pred HHHhCCEEEEECCCchhcCcHHHHHHHHHHhcCCCCeEEEECCCCCchh
Confidence 458999999999987542110 001 011 24789999998765554
No 105
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=64.66 E-value=5.3 Score=31.63 Aligned_cols=45 Identities=27% Similarity=0.324 Sum_probs=29.0
Q ss_pred hhhhcCEEEEeCCCCCcccc-cC-CC-CCCCC--CCeEEEEcCChhhhhh
Q psy14417 21 ALQNADLVLLLGARLNWMLH-FG-RA-PRFKS--NVKIIQVDLNAEELHN 65 (120)
Q Consensus 21 ~l~~aDlil~iG~~~~~~~~-~~-~~-~~~~~--~~~vi~Id~d~~~i~~ 65 (120)
-+++||+||++|+.+.+... .. .. ..... ++++|.||+.......
T Consensus 154 Di~~ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP~~t~ta~ 203 (565)
T cd02754 154 DIEHADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDPRRTRTAD 203 (565)
T ss_pred HHhhCCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcCCCCcchH
Confidence 45799999999998754211 00 01 01112 7899999998776654
No 106
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=64.31 E-value=5.6 Score=33.08 Aligned_cols=45 Identities=16% Similarity=0.056 Sum_probs=29.3
Q ss_pred hhhhcCEEEEeCCCCCcccccCCCCCC----CCCCeEEEEcCChhhhhh
Q psy14417 21 ALQNADLVLLLGARLNWMLHFGRAPRF----KSNVKIIQVDLNAEELHN 65 (120)
Q Consensus 21 ~l~~aDlil~iG~~~~~~~~~~~~~~~----~~~~~vi~Id~d~~~i~~ 65 (120)
-+.+||+||++|+.+...........+ ..++++|.||+.......
T Consensus 170 D~~~ad~Il~~G~Np~~s~~~~~~~~~~~ar~~GaKlIvVDPr~t~ta~ 218 (760)
T cd02760 170 DTPLANYVISFGSNVEASGGPCAVTRHADARVRGYKRVQVEPHLSVTGA 218 (760)
T ss_pred hHhcCCEEEEECCCchHhcCcHHHHHHHHHHHcCCeEEEEcCCCCcchh
Confidence 457899999999987432100001111 246899999998877665
No 107
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=63.99 E-value=7.7 Score=32.87 Aligned_cols=45 Identities=9% Similarity=0.067 Sum_probs=29.9
Q ss_pred hhhhcCEEEEeCCCCCcccccC-CC--CCCCCCCeEEEEcCChhhhhh
Q psy14417 21 ALQNADLVLLLGARLNWMLHFG-RA--PRFKSNVKIIQVDLNAEELHN 65 (120)
Q Consensus 21 ~l~~aDlil~iG~~~~~~~~~~-~~--~~~~~~~~vi~Id~d~~~i~~ 65 (120)
-+.+||+||++|+.+.+..... .+ .....+++||.||++......
T Consensus 221 D~~na~~Il~~G~Np~~t~~~~~~~l~~a~~~GaklVvIdPr~t~tA~ 268 (912)
T TIGR03479 221 DWFNADYIIMWGSNPSVTRIPDAHFLSEARYNGARVVSIAPDYNPSTI 268 (912)
T ss_pred hhhcCcEEEEecCChHHcCCchHHHHHHHHhcCCeEEEECCCCChhhh
Confidence 4578999999999875431111 00 111257899999999877654
No 108
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=63.25 E-value=7.6 Score=31.42 Aligned_cols=46 Identities=22% Similarity=0.272 Sum_probs=29.4
Q ss_pred HhhhhcCEEEEeCCCCCccccc-C-CC-CCCCCCCeEEEEcCChhhhhh
Q psy14417 20 HALQNADLVLLLGARLNWMLHF-G-RA-PRFKSNVKIIQVDLNAEELHN 65 (120)
Q Consensus 20 ~~l~~aDlil~iG~~~~~~~~~-~-~~-~~~~~~~~vi~Id~d~~~i~~ 65 (120)
.-+++||+||++|+.+...... . .. .....++++|.||+.......
T Consensus 151 ~di~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvidp~~s~ta~ 199 (671)
T TIGR01591 151 SEIENADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVIDPRKTETAK 199 (671)
T ss_pred HHHHhCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEECCCCChhhH
Confidence 3478899999999986542100 0 00 111257899999988766543
No 109
>cd02756 MopB_Arsenite-Ox Arsenite oxidase (Arsenite-Ox) oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin. Arsenite oxidase is a heterodimeric enzyme containing a large and a small subunit. The large catalytic subunit harbors the molybdopterin cofactor and the [3Fe-4S] cluster; and the small subunit belongs to the structural class of the Rieske proteins. The small subunit is not included in this alignment. Members of MopB_Arsenite-Ox CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=62.89 E-value=11 Score=31.10 Aligned_cols=44 Identities=23% Similarity=0.115 Sum_probs=27.5
Q ss_pred hhhhcCEEEEeCCCCCcccccCCCCC----------------C-----CCCCeEEEEcCChhhhh
Q psy14417 21 ALQNADLVLLLGARLNWMLHFGRAPR----------------F-----KSNVKIIQVDLNAEELH 64 (120)
Q Consensus 21 ~l~~aDlil~iG~~~~~~~~~~~~~~----------------~-----~~~~~vi~Id~d~~~i~ 64 (120)
=++.||+||++|+...+......... + .+++++|.||+......
T Consensus 220 Die~Ad~Il~~G~Np~et~pv~~~~~~~~~l~~~~~~~kk~~~~~G~~~~~~klIVVDPR~T~TA 284 (676)
T cd02756 220 DARLADTIVLWGNNPYETQTVYFLNHWLPNLRGATVSEKQQWFPPGEPVPPGRIIVVDPRRTETV 284 (676)
T ss_pred HHHhCCEEEEECCChHHhCcchHhhhhhhhhhhHHHHHHHhhhhcCCCCCCCEEEEEeCCCcchh
Confidence 36889999999998755321110000 0 12369999999876654
No 110
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=62.31 E-value=11 Score=29.63 Aligned_cols=45 Identities=4% Similarity=-0.000 Sum_probs=28.4
Q ss_pred hhhhcCEEEEeCCCCCccccc--CCCC----CCCC-----CCeEEEEcCChhhhhh
Q psy14417 21 ALQNADLVLLLGARLNWMLHF--GRAP----RFKS-----NVKIIQVDLNAEELHN 65 (120)
Q Consensus 21 ~l~~aDlil~iG~~~~~~~~~--~~~~----~~~~-----~~~vi~Id~d~~~i~~ 65 (120)
-+++||+||++|+.+.+.... .... .... +.++|.||+.......
T Consensus 193 D~~~a~~il~~G~N~~~~~~~~~~~~~~~~~ar~~g~~~~g~kliviDPr~s~ta~ 248 (524)
T cd02764 193 DFDKAEVIVSIDADFLGSWISAIRHRHDFAAKRRLGAEEPMSRLVAAESVYTLTGA 248 (524)
T ss_pred ChhHCcEEEEECCcccccCcccchhHHHHHHhccccCCCCceeEEEEecCCCchhh
Confidence 468999999999987553100 0011 1111 2399999998877664
No 111
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=61.05 E-value=21 Score=28.13 Aligned_cols=70 Identities=19% Similarity=0.285 Sum_probs=34.6
Q ss_pred HHHhhhhcCEEEEeCCCCCcccc---------cCCCCCCC--CCCeEEEEcCChhh----hhh---ccccceEEecCHHH
Q psy14417 18 RTHALQNADLVLLLGARLNWMLH---------FGRAPRFK--SNVKIIQVDLNAEE----LHN---SVQAAVAIQSDVRL 79 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~~---------~~~~~~~~--~~~~vi~Id~d~~~----i~~---~~~~~~~i~~d~~~ 79 (120)
.+.-+.++|++|+||+.-...+. +| .+-+. +..++|-+..+-.. +.+ ..+...-+.||+++
T Consensus 376 iN~~f~~~Dv~lViGANDvVNPaA~~d~~SpI~G-MPil~v~~ak~Viv~Krsm~~Gyagv~NpLF~~~nt~MlfGDAk~ 454 (463)
T PF02233_consen 376 INPDFPDTDVVLVIGANDVVNPAAREDPNSPIYG-MPILEVWKAKQVIVIKRSMSPGYAGVDNPLFYKDNTRMLFGDAKK 454 (463)
T ss_dssp HGGGGGG-SEEEEES-SGGG-CHHCCSTTSTTTT-SS---GGGSSEEEEEESSS--TTTS-S-GGGGSTTEEEEES-HHH
T ss_pred cccchhcCCEEEEeccccccCchhccCCCCCCCC-CeecchhhcCeEEEEEcCCCCCCCCCCCcceecCCcEEEeccHHH
Confidence 56678999999999985221110 11 11110 12345555433211 111 12334568899999
Q ss_pred HHHHHHHHh
Q psy14417 80 TVQQLKQML 88 (120)
Q Consensus 80 ~l~~L~~~l 88 (120)
.++++...+
T Consensus 455 ~~~~l~~~~ 463 (463)
T PF02233_consen 455 TLEELVAEL 463 (463)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 999987653
No 112
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=59.28 E-value=25 Score=28.32 Aligned_cols=84 Identities=17% Similarity=0.187 Sum_probs=49.2
Q ss_pred HhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEEecCHHHHHHHHHHHhhhcccCCccCC
Q psy14417 20 HALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSA 99 (120)
Q Consensus 20 ~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~ 99 (120)
+.+.. |.||-+|..+......-+... ....+.+.||.....+.-.....-.+..++..+++.+..... .
T Consensus 277 ~~L~~-d~VI~fG~~~~SK~l~qwl~~-~~~~~~~vvd~~~~~~Dp~~~~~~~~~~~v~~~~~~~~~~~~---------~ 345 (566)
T COG1165 277 EKLRP-DIVIQFGSPPTSKRLLQWLAD-TEPIEYWVVDPGGGWLDPSHHATTRLSADVATWARSIHPAGR---------I 345 (566)
T ss_pred hhcCc-cEEEEeCCCcccHHHHHHHhc-cCCCcEEEEcCCCCcCCcccccceEEEeehhHhHHHhccccc---------c
Confidence 34444 999999988754321111111 123678888888766665555555677888887766532211 1
Q ss_pred CchHHHHHHHHHhhh
Q psy14417 100 TSPWWQELKLKCQTN 114 (120)
Q Consensus 100 ~~~w~~~~~~~~~~~ 114 (120)
.+.|.+++....+..
T Consensus 346 ~~~Wl~~~~~~~~~~ 360 (566)
T COG1165 346 RKPWLDEWLALNEKA 360 (566)
T ss_pred ccHHHHHHHHHHHHH
Confidence 456776666554433
No 113
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=59.07 E-value=23 Score=24.51 Aligned_cols=65 Identities=17% Similarity=0.241 Sum_probs=41.0
Q ss_pred hhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhh--c------cccce-EEecCHHHHHHHHHHH
Q psy14417 22 LQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHN--S------VQAAV-AIQSDVRLTVQQLKQM 87 (120)
Q Consensus 22 l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~--~------~~~~~-~i~~d~~~~l~~L~~~ 87 (120)
+.++-.||-||+-.... +-.-...++++.+|+.|+.++..... . ....+ .+.||+.++|+.|...
T Consensus 43 ~~~~k~vLEIGt~~GyS-al~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~ 116 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYS-ALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELAND 116 (205)
T ss_dssp HHT-SEEEEESTTTSHH-HHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHT
T ss_pred hcCCceEEEeccccccH-HHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhc
Confidence 46899999999977643 21111234567899999999865431 1 11122 3669999999998754
No 114
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=58.71 E-value=9.8 Score=26.38 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=18.1
Q ss_pred ccccCh--HHHHhhhhcC-EEEEeCCCC
Q psy14417 11 PNCVSA--ARTHALQNAD-LVLLLGARL 35 (120)
Q Consensus 11 p~~~G~--~~~~~l~~aD-lil~iG~~~ 35 (120)
|+..|. ....++++|| |||+||+.-
T Consensus 15 PfH~GHl~~I~~al~~~devII~IGSA~ 42 (196)
T PRK13793 15 PFHLAHMQTIEIALQQSRYVILALGSAQ 42 (196)
T ss_pred CCcHHHHHHHHHHHHhCCEEEEEEccCC
Confidence 666664 4567888888 778888653
No 115
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=58.61 E-value=34 Score=26.26 Aligned_cols=70 Identities=17% Similarity=0.223 Sum_probs=41.4
Q ss_pred HhhhhcCEEEEeCCCCCcccc--cCCCCC-----C----CCCCeEEEEcCChhhhhh--ccccceEEecCHHHHHHHHHH
Q psy14417 20 HALQNADLVLLLGARLNWMLH--FGRAPR-----F----KSNVKIIQVDLNAEELHN--SVQAAVAIQSDVRLTVQQLKQ 86 (120)
Q Consensus 20 ~~l~~aDlil~iG~~~~~~~~--~~~~~~-----~----~~~~~vi~Id~d~~~i~~--~~~~~~~i~~d~~~~l~~L~~ 86 (120)
+.=..||+|+-.|+.+.+... ...+.. | ..+.++|.||+......+ .....+..-+|. +++.+|..
T Consensus 136 evKNraDviVyWGtNP~~shPRhmSRYs~f~RG~~~~rGr~dRtvIvVD~RkT~TAklad~~~qi~p~sDy-elisAl~~ 214 (429)
T COG1029 136 EVKNRADVIVYWGTNPMHSHPRHMSRYSVFPRGFFRPRGREDRTVIVVDPRKTATAKLADNHVQIKPNSDY-ELISALRA 214 (429)
T ss_pred hhcccccEEEEeCCCcccccchhhhhcccccccccccCCcccceEEEEecCcCchhhhhhheEecCCCCcH-HHHHHHHH
Confidence 444689999999998643211 111111 1 135679999987655432 233444444554 67788887
Q ss_pred Hhhh
Q psy14417 87 MLSH 90 (120)
Q Consensus 87 ~l~~ 90 (120)
.+.+
T Consensus 215 ~l~G 218 (429)
T COG1029 215 ALHG 218 (429)
T ss_pred HhcC
Confidence 7763
No 116
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=58.11 E-value=15 Score=29.60 Aligned_cols=44 Identities=11% Similarity=0.151 Sum_probs=29.0
Q ss_pred hhhcCEEEEeCCCCCcccccC--C---C---C----CCCCCCeEEEEcCChhhhhh
Q psy14417 22 LQNADLVLLLGARLNWMLHFG--R---A---P----RFKSNVKIIQVDLNAEELHN 65 (120)
Q Consensus 22 l~~aDlil~iG~~~~~~~~~~--~---~---~----~~~~~~~vi~Id~d~~~i~~ 65 (120)
+++||+||++|+...+....+ . . . ....++++|.||+..+....
T Consensus 168 ~~~a~~il~wG~Np~~t~~~~~~~~~~~~~~~~~~~ar~~GaklIvIDPr~t~tA~ 223 (609)
T cd02769 168 AEHTELVVAFGADPLKNAQIAWGGIPDHQAYSYLKALKDRGIRFISISPLRDDTAA 223 (609)
T ss_pred HhhCCeEEEECCChHHhCcccccccCCcchHHHHHHHHhCCCEEEEEcCCCCcchh
Confidence 689999999999875431100 0 0 0 11257899999998877654
No 117
>PHA02127 hypothetical protein
Probab=57.44 E-value=4.8 Score=21.39 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=22.3
Q ss_pred HhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEc
Q psy14417 20 HALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVD 57 (120)
Q Consensus 20 ~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id 57 (120)
..++.||-++-+|++|.-..+ ..-++.+||++
T Consensus 25 hv~~sad~m~pigt~fpikdt------v~l~adviqln 56 (57)
T PHA02127 25 HVLKSADPMLPVGTEFPIKDT------VTLDADVIQLN 56 (57)
T ss_pred eeecccCccccccccccccce------EEeeeeEEEec
Confidence 468899999999999864321 11256778775
No 118
>KOG4180|consensus
Probab=56.35 E-value=16 Score=27.53 Aligned_cols=41 Identities=17% Similarity=0.287 Sum_probs=28.9
Q ss_pred hhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhh
Q psy14417 22 LQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELH 64 (120)
Q Consensus 22 l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~ 64 (120)
+..||+||.+|.+-+.....+ .......+||-||.||..-.
T Consensus 103 i~waD~VisvGGDGTfL~Aas--rv~~~~~PViGvNtDP~~Se 143 (395)
T KOG4180|consen 103 IRWADMVISVGGDGTFLLAAS--RVIDDSKPVIGVNTDPTGSE 143 (395)
T ss_pred CchhhEEEEecCccceeehhh--hhhccCCceeeecCCCCcCc
Confidence 789999999998765432222 12345678999999996543
No 119
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=56.32 E-value=4.6 Score=29.82 Aligned_cols=44 Identities=30% Similarity=0.342 Sum_probs=28.3
Q ss_pred hhhhcCEEEEeCCCCCccccc-C-CC-CCCCCCCeEEEEcCChhhhh
Q psy14417 21 ALQNADLVLLLGARLNWMLHF-G-RA-PRFKSNVKIIQVDLNAEELH 64 (120)
Q Consensus 21 ~l~~aDlil~iG~~~~~~~~~-~-~~-~~~~~~~~vi~Id~d~~~i~ 64 (120)
-+++||+||++|+.+.+.... . .. .....++++|.||+.....+
T Consensus 153 d~~~ad~il~~G~n~~~~~~~~~~~~~~a~~~g~kvv~idp~~s~t~ 199 (374)
T cd00368 153 DIENADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPRRTETA 199 (374)
T ss_pred HHhhCCEEEEEcCChHHhChHHHHHHHHHHHCCCeEEEEcCCCCcch
Confidence 457999999999987542110 0 00 11124789999999886554
No 120
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=55.93 E-value=6.1 Score=31.79 Aligned_cols=45 Identities=22% Similarity=0.278 Sum_probs=29.0
Q ss_pred HhhhhcCEEEEeCCCCCcccccC--CCCCC----CCCCeEEEEcCChhhhh
Q psy14417 20 HALQNADLVLLLGARLNWMLHFG--RAPRF----KSNVKIIQVDLNAEELH 64 (120)
Q Consensus 20 ~~l~~aDlil~iG~~~~~~~~~~--~~~~~----~~~~~vi~Id~d~~~i~ 64 (120)
.-+.+||+||++|+.+.+..... ....+ ..++++|.||+......
T Consensus 162 ~D~~~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~~~G~klivIDPr~t~tA 212 (617)
T cd02770 162 DDLKDSKLVVLFGHNPAETRMGGGGSTYYYLQAKKAGAKFIVIDPRYTDTA 212 (617)
T ss_pred HHHhcCCEEEEECCCHHHhcCCCCchHHHHHHHHHcCCeEEEECCCCCccc
Confidence 34578999999999875431110 00111 24789999999887655
No 121
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=54.83 E-value=4.5 Score=32.46 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=26.4
Q ss_pred HhhhhcCEEEEeCCCCCcccc-cC-CC-CCCCCCCeEEEEcCChh
Q psy14417 20 HALQNADLVLLLGARLNWMLH-FG-RA-PRFKSNVKIIQVDLNAE 61 (120)
Q Consensus 20 ~~l~~aDlil~iG~~~~~~~~-~~-~~-~~~~~~~~vi~Id~d~~ 61 (120)
+-+++||+||++|..+..... .. .. .....+++||.||+..+
T Consensus 159 ~Di~~ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~~ 203 (574)
T cd02767 159 EDFEHTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLRE 203 (574)
T ss_pred HHHhcCCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEECCCcc
Confidence 346789999999998653210 00 00 11124789999998654
No 122
>COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=54.74 E-value=9.2 Score=23.40 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=21.0
Q ss_pred hhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCC
Q psy14417 22 LQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLN 59 (120)
Q Consensus 22 l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d 59 (120)
..+|||+|++|.+.... +.+ .+.+++.+|..
T Consensus 38 p~dAeLviV~G~sipnd------~~l-~GKkv~i~d~~ 68 (103)
T COG3925 38 PNDAELVIVFGSSIPND------SAL-NGKKVWIGDIE 68 (103)
T ss_pred CCcccEEEEeccccCCC------ccc-cCceEEEecHH
Confidence 46899999999887532 122 25677777653
No 123
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=54.15 E-value=16 Score=26.05 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=19.8
Q ss_pred CccccChHHHHhhhhcCEEEEeCCCCC
Q psy14417 10 HPNCVSAARTHALQNADLVLLLGARLN 36 (120)
Q Consensus 10 hp~~~G~~~~~~l~~aDlil~iG~~~~ 36 (120)
|-+-....-...|.+||+||.+|..+.
T Consensus 38 H~y~~~p~d~~~l~~ADliv~~G~~lE 64 (264)
T cd01020 38 HDFEPTPTDAAKVSTADIVVYNGGGYD 64 (264)
T ss_pred ccCCCCHHHHHHHhhCCEEEEeCCCch
Confidence 333334455678999999999998775
No 124
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=53.46 E-value=16 Score=29.34 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=27.1
Q ss_pred hcCEEEEeCCCCCcccccCC----------C-CCCCCCCeEEEEcCChhhhhh
Q psy14417 24 NADLVLLLGARLNWMLHFGR----------A-PRFKSNVKIIQVDLNAEELHN 65 (120)
Q Consensus 24 ~aDlil~iG~~~~~~~~~~~----------~-~~~~~~~~vi~Id~d~~~i~~ 65 (120)
+||+||++|+.+.+...... . .....++++|.||+.......
T Consensus 169 ~ad~il~wG~N~~~~~~~~~~~~~~~~~~~~~~a~~~GakiivIDPr~s~ta~ 221 (609)
T cd02751 169 HSDLVVLFGANPLKTRQGGGGGPDHGSYYYLKQAKDAGVRFICIDPRYTDTAA 221 (609)
T ss_pred cCCEEEEECCCHHHhcCCCCCccCcchHHHHHHHHHCCCeEEEECCCCCcccc
Confidence 49999999998754311110 0 011247899999998876653
No 125
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=52.56 E-value=14 Score=26.53 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=17.9
Q ss_pred hHHHHhhhhcCEEEEeCCCCC
Q psy14417 16 AARTHALQNADLVLLLGARLN 36 (120)
Q Consensus 16 ~~~~~~l~~aDlil~iG~~~~ 36 (120)
+-+.+++++||+||-.|+-.+
T Consensus 20 vkg~~ll~~advviYAGSLV~ 40 (254)
T COG2875 20 VKGQRLLEKADVVIYAGSLVP 40 (254)
T ss_pred ehHHHHHhhCCEEEECCCcCC
Confidence 357899999999999998654
No 126
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=52.22 E-value=41 Score=26.49 Aligned_cols=19 Identities=11% Similarity=0.214 Sum_probs=15.1
Q ss_pred cceEEecCHHHHHHHHHHH
Q psy14417 69 AAVAIQSDVRLTVQQLKQM 87 (120)
Q Consensus 69 ~~~~i~~d~~~~l~~L~~~ 87 (120)
...-+.||+++.+++|...
T Consensus 443 nt~MlfGDAK~~~~~l~~~ 461 (462)
T PRK09444 443 NTQMLFGDAKASVDAILKA 461 (462)
T ss_pred CceEEeccHHHHHHHHHHh
Confidence 3556889999999998754
No 127
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=51.41 E-value=11 Score=28.58 Aligned_cols=42 Identities=31% Similarity=0.434 Sum_probs=26.6
Q ss_pred HHhhhhcCEEEEeCCCCCccc-ccC-CC-CCC-CCCCeEEEEcCCh
Q psy14417 19 THALQNADLVLLLGARLNWML-HFG-RA-PRF-KSNVKIIQVDLNA 60 (120)
Q Consensus 19 ~~~l~~aDlil~iG~~~~~~~-~~~-~~-~~~-~~~~~vi~Id~d~ 60 (120)
..-|++||+||+||+.+.+.. ... .. ... ..+.+|+.|++..
T Consensus 143 l~die~ad~illiG~n~~~e~Pvl~~rlrka~~~~~~ki~vi~~~~ 188 (366)
T cd02774 143 LKNLDKSDLCLLIGSNLRVESPILNIRLRNRYNKGNKKIFVIGNKF 188 (366)
T ss_pred HHHHhhCCEEEEEcCCcchhhHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 345789999999999875431 111 00 111 2367899998766
No 128
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=51.11 E-value=9.7 Score=32.80 Aligned_cols=45 Identities=27% Similarity=0.354 Sum_probs=28.9
Q ss_pred hhhhcCEEEEeCCCCCcccccC--CC-CCCCCCCeEEEEcCChhhhhh
Q psy14417 21 ALQNADLVLLLGARLNWMLHFG--RA-PRFKSNVKIIQVDLNAEELHN 65 (120)
Q Consensus 21 ~l~~aDlil~iG~~~~~~~~~~--~~-~~~~~~~~vi~Id~d~~~i~~ 65 (120)
=+++||+||++|+.+.+..... .. .....+++||.||+.......
T Consensus 218 Di~~Ad~Ilv~G~Np~es~p~~~~~i~~Ak~~GakiIvIDPR~t~tA~ 265 (1009)
T TIGR01553 218 DIKNSDLILVMGGNPAENHPIGFKWAIRAKKKGAKIIHIDPRFNRTAT 265 (1009)
T ss_pred HHHhCCEEEEECCChhhhChHHHHHHHHHHHcCCEEEEEcCCCCchhH
Confidence 3688999999999875431100 00 111247899999998766543
No 129
>KOG3954|consensus
Probab=50.64 E-value=20 Score=26.32 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=38.5
Q ss_pred cCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEEecCHHHHHHHHHHHhh
Q psy14417 25 ADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 25 aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~~l~~L~~~l~ 89 (120)
-.|-|++|.+---. . ..-+.....|+-||-||..-- ..-+|+.++||.-.++++|++.|.
T Consensus 275 PeLYiAvGisGAIQ-H---LAGmKDSKvIvAINkDpdAPI-FqvAD~GlvgDLfkiVPELtekL~ 334 (336)
T KOG3954|consen 275 PELYIAVGISGAIQ-H---LAGMKDSKVIVAINKDPDAPI-FQVADYGLVGDLFKIVPELTEKLP 334 (336)
T ss_pred cceEEEEeccHHHH-H---hhcCccceEEEEecCCCCCCc-eeeecccchhhHHHHhHHHHHhcc
Confidence 35667777653211 1 111223345777988885422 124799999999999999999886
No 130
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=49.25 E-value=6.9 Score=31.47 Aligned_cols=46 Identities=28% Similarity=0.382 Sum_probs=28.5
Q ss_pred HhhhhcCEEEEeCCCCCcccc-cC-CC-CCCCC-CCeEEEEcCChhhhhh
Q psy14417 20 HALQNADLVLLLGARLNWMLH-FG-RA-PRFKS-NVKIIQVDLNAEELHN 65 (120)
Q Consensus 20 ~~l~~aDlil~iG~~~~~~~~-~~-~~-~~~~~-~~~vi~Id~d~~~i~~ 65 (120)
.-+++||+||++|+.+.+... .. .. ..... ++++|.||+.......
T Consensus 358 ~di~~ad~il~~G~N~~~s~p~~~~~i~~a~~~ggaklividpr~s~ta~ 407 (603)
T TIGR01973 358 ADIEEADLVLLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGIEKWNLTY 407 (603)
T ss_pred HHHHhCCEEEEEccCchhhhHHHHHHHHHHHhcCCcEEEEECCccccchh
Confidence 346889999999998755311 10 00 01112 3799999987666543
No 131
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=48.80 E-value=19 Score=30.43 Aligned_cols=70 Identities=10% Similarity=0.105 Sum_probs=38.5
Q ss_pred HhhhhcCEEEEeCCCCCcc-cccCCC--CCC-CCCCeEEEEcCChhhhhhcc-ccceEE---ecCHHHHHHHHHHHhh
Q psy14417 20 HALQNADLVLLLGARLNWM-LHFGRA--PRF-KSNVKIIQVDLNAEELHNSV-QAAVAI---QSDVRLTVQQLKQMLS 89 (120)
Q Consensus 20 ~~l~~aDlil~iG~~~~~~-~~~~~~--~~~-~~~~~vi~Id~d~~~i~~~~-~~~~~i---~~d~~~~l~~L~~~l~ 89 (120)
+-|++||+||++|+.+.+. +..+.. ... ..++++|.||+-.......+ ...+.+ .|.-..++..|+..+-
T Consensus 366 ~DI~~AD~IlviGsN~~e~hPvl~~~I~~A~k~~gaklIvidPr~~~~~~~~a~~~~~l~~~PGtd~all~~ll~~ii 443 (819)
T PRK08493 366 EDIKTSDFVVVAGSALKTDNPLLRYAINNALKMNKASGLYFHPIKDNVIANLSKNFFCITHEVGAEEIILYFLLKKFL 443 (819)
T ss_pred HHHhhCCEEEEECCChhhhCHHHHHHHHHHHHhCCCeEEEEecCCchhhhhhhhcceEeecCCCcHHHHHHHHHHHHH
Confidence 3478999999999987542 111111 111 14678999998775443221 111222 3444556666665543
No 132
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=48.75 E-value=19 Score=29.66 Aligned_cols=44 Identities=9% Similarity=0.063 Sum_probs=26.8
Q ss_pred hhhhcCEEEEeCCCCCccccc--CCC-CCCCCCCeEEEEcCChhhhh
Q psy14417 21 ALQNADLVLLLGARLNWMLHF--GRA-PRFKSNVKIIQVDLNAEELH 64 (120)
Q Consensus 21 ~l~~aDlil~iG~~~~~~~~~--~~~-~~~~~~~~vi~Id~d~~~i~ 64 (120)
-+++||+||++|+........ ... .....++++|.||+......
T Consensus 152 D~~~Ad~Ivl~G~n~~~~~~p~~~~i~~ak~~GaKlIvIDPr~t~ta 198 (679)
T cd02763 152 DLEHTKYFMMIGVAEDHHSNPFKIGIQKLKRRGGKFVAVNPVRTGYA 198 (679)
T ss_pred HHHhCCEEEEECCCCcccCchHHHHHHHHHhCCCcEEEEcCcCCcch
Confidence 457899999999854321000 000 11124789999998776654
No 133
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=48.38 E-value=21 Score=25.67 Aligned_cols=20 Identities=15% Similarity=0.302 Sum_probs=16.9
Q ss_pred HHHHhhhhcCEEEEeCCCCC
Q psy14417 17 ARTHALQNADLVLLLGARLN 36 (120)
Q Consensus 17 ~~~~~l~~aDlil~iG~~~~ 36 (120)
.-...+.+|||||.+|..+.
T Consensus 45 ~d~~~l~~Adliv~~G~~~e 64 (282)
T cd01017 45 KDIARIADADVFVYNGLGME 64 (282)
T ss_pred HHHHHHHhCCEEEEcCcchH
Confidence 45678999999999998775
No 134
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=47.25 E-value=7.9 Score=32.08 Aligned_cols=40 Identities=15% Similarity=0.167 Sum_probs=25.7
Q ss_pred hhhhcCEEEEeCCCCCcccc-cC-CC-CCCCCCCeEEEEcCCh
Q psy14417 21 ALQNADLVLLLGARLNWMLH-FG-RA-PRFKSNVKIIQVDLNA 60 (120)
Q Consensus 21 ~l~~aDlil~iG~~~~~~~~-~~-~~-~~~~~~~~vi~Id~d~ 60 (120)
-+++||+||++|....+... .. .. .....+++||.||+..
T Consensus 195 Di~~ad~Il~~G~Np~~~~p~~~~~l~~a~~rGakiIvIdP~~ 237 (743)
T TIGR01701 195 DFEHTDCLVFIGSNAGTNHPRMLKYLYAAKKRGAKIIAINPLR 237 (743)
T ss_pred HHHhCCEEEEEecCcccccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 46789999999998754211 00 00 1112478999999855
No 135
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=46.71 E-value=25 Score=25.16 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=18.3
Q ss_pred ChHHHHhhhhcCEEEEeCCCCCc
Q psy14417 15 SAARTHALQNADLVLLLGARLNW 37 (120)
Q Consensus 15 G~~~~~~l~~aDlil~iG~~~~~ 37 (120)
...-...+.+||+||..|..+..
T Consensus 42 ~p~d~~~l~~Adlvv~~G~~le~ 64 (266)
T cd01018 42 KPQQMKKLSEADLYFRIGLGFEE 64 (266)
T ss_pred CHHHHHHHHhCCEEEEcCCcchH
Confidence 33456789999999999988853
No 136
>PRK15102 trimethylamine N-oxide reductase I catalytic subunit; Provisional
Probab=46.52 E-value=51 Score=27.68 Aligned_cols=44 Identities=20% Similarity=0.385 Sum_probs=28.2
Q ss_pred hhhcCEEEEeCCCCCcccccC-----C-----CCCC----C-CCCeEEEEcCChhhhhh
Q psy14417 22 LQNADLVLLLGARLNWMLHFG-----R-----APRF----K-SNVKIIQVDLNAEELHN 65 (120)
Q Consensus 22 l~~aDlil~iG~~~~~~~~~~-----~-----~~~~----~-~~~~vi~Id~d~~~i~~ 65 (120)
+.+||+||++|+.+.+....+ . +... . .++++|.||+.......
T Consensus 211 ~~~a~~ii~wG~Np~~s~~~~~~~~~~p~~~~~~~~~~~~~~~gaklIvIDPr~t~tA~ 269 (825)
T PRK15102 211 LENSKTIVLWGSDPVKNLQVGWNCETHESYAYLAQLKEKVAKGEINVISIDPVVTKTQN 269 (825)
T ss_pred HHhCCEEEEECCChHHhccCccccCCCcHHHHHHHHHHHhhcCCCEEEEECCCCCchhh
Confidence 689999999999875421000 0 0000 1 25899999998877654
No 137
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=46.48 E-value=36 Score=20.10 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=22.8
Q ss_pred HHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCC
Q psy14417 19 THALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLN 59 (120)
Q Consensus 19 ~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d 59 (120)
.+-+.+||+||++|....+. ...| .+.+++.+.++
T Consensus 47 ~~~i~~Ad~viia~d~~~~~-----~~rf-~gk~v~~~~~~ 81 (85)
T TIGR00829 47 AEDIAAADGVILAADREIDL-----SRRF-AGKNVYETSTG 81 (85)
T ss_pred HHHHHhCCEEEEeccCCCch-----hhhc-CCCeEEEecHH
Confidence 36789999999999764331 1113 35578877654
No 138
>PRK09939 putative oxidoreductase; Provisional
Probab=46.20 E-value=6.8 Score=32.62 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=25.4
Q ss_pred hhhhcCEEEEeCCCCCcccc-cC-CC-CCCCCCCeEEEEcCCh
Q psy14417 21 ALQNADLVLLLGARLNWMLH-FG-RA-PRFKSNVKIIQVDLNA 60 (120)
Q Consensus 21 ~l~~aDlil~iG~~~~~~~~-~~-~~-~~~~~~~~vi~Id~d~ 60 (120)
-+++||+||++|+...+... .. .. .....+++||.||+-.
T Consensus 205 Di~~ad~Ili~G~Np~~~hP~~~~~l~~a~~rGakiIvIDPr~ 247 (759)
T PRK09939 205 DFEKCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQ 247 (759)
T ss_pred HHhhCCEEEEeCCChHHHHHHHHHHHHHHHHCCCEEEEECCCC
Confidence 36899999999998654210 10 00 1112478999999854
No 139
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=45.59 E-value=24 Score=24.16 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=16.6
Q ss_pred HHHHhhhhcCEEEEeCCCCC
Q psy14417 17 ARTHALQNADLVLLLGARLN 36 (120)
Q Consensus 17 ~~~~~l~~aDlil~iG~~~~ 36 (120)
.-...+.+||+||..|..+.
T Consensus 44 ~d~~~l~~Adliv~~G~~~E 63 (203)
T cd01145 44 SDIAKMRKADLVVTSGHELE 63 (203)
T ss_pred HHHHHHhcCCEEEEcCCCHH
Confidence 44677899999999998774
No 140
>TIGR02693 arsenite_ox_L arsenite oxidase, large subunit. This model represents the large subunit of an arsenite oxidase complex. The small subunit is a Rieske protein. Homologs to both large and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7. This enzyme acts in energy metabolim by arsenite oxidation, rather than detoxification by reduction of arsenate to arsenite prior to export.
Probab=44.46 E-value=15 Score=30.88 Aligned_cols=19 Identities=26% Similarity=0.218 Sum_probs=15.2
Q ss_pred HhhhhcCEEEEeCCCCCcc
Q psy14417 20 HALQNADLVLLLGARLNWM 38 (120)
Q Consensus 20 ~~l~~aDlil~iG~~~~~~ 38 (120)
+-++.||+||++|+...+.
T Consensus 216 ~D~~~Ad~iv~~G~Np~et 234 (806)
T TIGR02693 216 EDARLADTIVLWGANSYET 234 (806)
T ss_pred HHHHhCCEEEEECCChHHh
Confidence 3467999999999987553
No 141
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=43.44 E-value=30 Score=25.50 Aligned_cols=20 Identities=35% Similarity=0.614 Sum_probs=17.0
Q ss_pred HHHHhhhhcCEEEEeCCCCC
Q psy14417 17 ARTHALQNADLVLLLGARLN 36 (120)
Q Consensus 17 ~~~~~l~~aDlil~iG~~~~ 36 (120)
.-...+.+||+||.+|..+.
T Consensus 66 ~d~~~l~~ADlvv~nG~~lE 85 (311)
T PRK09545 66 SDVKRLQSADLVVWVGPEME 85 (311)
T ss_pred HHHHHHhcCCEEEEeCCChH
Confidence 45678999999999998875
No 142
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=43.42 E-value=12 Score=28.27 Aligned_cols=45 Identities=24% Similarity=0.238 Sum_probs=26.0
Q ss_pred HhhhhcCEEEEeCCCCCcccccC--CC-C-CCCCCCeEEEEcCChhhhh
Q psy14417 20 HALQNADLVLLLGARLNWMLHFG--RA-P-RFKSNVKIIQVDLNAEELH 64 (120)
Q Consensus 20 ~~l~~aDlil~iG~~~~~~~~~~--~~-~-~~~~~~~vi~Id~d~~~i~ 64 (120)
.-+++||+||++|+.+....... .+ . ....++++|.||+......
T Consensus 107 ~D~~~ad~il~~G~n~~~~~~~~~~~~~~~~~~~g~k~v~vdP~~t~~a 155 (432)
T PF00384_consen 107 EDIENADVILIWGANPAESHPHLNARFRKAARKRGAKLVVVDPRRTPTA 155 (432)
T ss_dssp HGGGH-SEEEEES--HHHHSHHHHHHHHHHHHHCTSEEEEEESSB-HHG
T ss_pred ceeeccceEEEcccCccccccccccccccccccCCcceEEEEeccchhh
Confidence 35789999999999875431101 00 0 1123689999999987654
No 143
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=43.04 E-value=36 Score=22.75 Aligned_cols=50 Identities=22% Similarity=0.244 Sum_probs=27.8
Q ss_pred HHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEEecCHH
Q psy14417 19 THALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVR 78 (120)
Q Consensus 19 ~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~ 78 (120)
.+.+++||.|++.-....... ...+.+++-+|.+..+.. ..+-.++||+.
T Consensus 74 ~~~~~~ADIVVsa~G~~~~i~----~~~ik~gavVIDvG~~~~------~~~~~~~GDv~ 123 (160)
T PF02882_consen 74 QEITRRADIVVSAVGKPNLIK----ADWIKPGAVVIDVGINYV------PGDGKLVGDVD 123 (160)
T ss_dssp HHHHTTSSEEEE-SSSTT-B-----GGGS-TTEEEEE--CEEE------TTTTEEEESB-
T ss_pred cceeeeccEEeeeeccccccc----cccccCCcEEEecCCccc------cccceeeeccc
Confidence 567899999988766655432 123456777777766554 23446777775
No 144
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=41.97 E-value=31 Score=24.30 Aligned_cols=21 Identities=38% Similarity=0.406 Sum_probs=16.3
Q ss_pred HHHHhhhhcCEEEEeCCCCCc
Q psy14417 17 ARTHALQNADLVLLLGARLNW 37 (120)
Q Consensus 17 ~~~~~l~~aDlil~iG~~~~~ 37 (120)
.-.+.+++||+||..|..+..
T Consensus 40 ~d~~~l~~Adlvv~~G~~~e~ 60 (256)
T PF01297_consen 40 SDIKKLQKADLVVYNGLGLEP 60 (256)
T ss_dssp HHHHHHHHSSEEEES-TTTSC
T ss_pred HHHHHHHhCCEEEEeCCccch
Confidence 456788999999999988763
No 145
>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.
Probab=41.66 E-value=14 Score=30.59 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=28.9
Q ss_pred hhhcCEEEEeCCCCCcccccCC-------CCCC----CCCCeEEEEcCChhhhhh
Q psy14417 22 LQNADLVLLLGARLNWMLHFGR-------APRF----KSNVKIIQVDLNAEELHN 65 (120)
Q Consensus 22 l~~aDlil~iG~~~~~~~~~~~-------~~~~----~~~~~vi~Id~d~~~i~~ 65 (120)
+.+||+||++|+...+...... ...+ ..++++|.||+.......
T Consensus 165 ~~~a~~il~~G~Np~~t~~~~~~~~~~~~~~~~~~a~~~G~klIvIDPr~t~tA~ 219 (770)
T TIGR00509 165 LENSKVLVLWGADPLKTSQIAWGIPDHGGYEYLERLKAKGKRVISIDPVRTETAE 219 (770)
T ss_pred HhcCCEEEEeCCCHHHhCccccccCCcchHHHHHHHHHcCCEEEEEcCCCCcchh
Confidence 6899999999998754311000 0111 247899999998876643
No 146
>cd02758 MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD contains tetrathionate reductase, subunit A, (TtrA) and other related proteins. The Salmonella enterica tetrathionate reductase catalyses the reduction of trithionate but not sulfur or thiosulfate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=41.43 E-value=15 Score=30.45 Aligned_cols=42 Identities=21% Similarity=0.160 Sum_probs=27.8
Q ss_pred hhhcCEEEEeCCCCCcccccCC---CC----CC-CCCCeEEEEcCChhhhh
Q psy14417 22 LQNADLVLLLGARLNWMLHFGR---AP----RF-KSNVKIIQVDLNAEELH 64 (120)
Q Consensus 22 l~~aDlil~iG~~~~~~~~~~~---~~----~~-~~~~~vi~Id~d~~~i~ 64 (120)
+++||+||++|+.+.+.. ... .. .. ..+.++|.||+......
T Consensus 209 ~~~ad~il~~GsN~a~~~-~~~~~~~~~l~~a~~~~G~KlVVVDPr~t~ta 258 (735)
T cd02758 209 FDNAEFALFIGTSPAQAG-NPFKRQARRLAEARTEGNFKYVVVDPVLPNTT 258 (735)
T ss_pred HhhCcEEEEeCCCHHHhC-CCcchHHHHHHHHHHhCCCEEEEECCCCCccc
Confidence 578999999999876531 110 11 11 14689999999876543
No 147
>TIGR02164 torA trimethylamine-N-oxide reductase TorA. This very narrowly defined family represents TorA, part of a family of related molybdoenzymes that include biotin sulfoxide reductases, dimethyl sulfoxide reductases, and at least two different subfamilies of trimethylamine-N-oxide reductases. A single enzyme from the larger family may have more than one activity. TorA typically is located in the periplasm, has a Tat (twin-arginine translocation)-dependent signal sequence, and is encoded in a torCAD operon.
Probab=40.96 E-value=64 Score=27.13 Aligned_cols=44 Identities=18% Similarity=0.318 Sum_probs=27.6
Q ss_pred hhhcCEEEEeCCCCCcccccC-----CC--CCC-------CC-CCeEEEEcCChhhhhh
Q psy14417 22 LQNADLVLLLGARLNWMLHFG-----RA--PRF-------KS-NVKIIQVDLNAEELHN 65 (120)
Q Consensus 22 l~~aDlil~iG~~~~~~~~~~-----~~--~~~-------~~-~~~vi~Id~d~~~i~~ 65 (120)
+.+||+||++|+.+.+....+ .. ..+ .. ++++|.||+.......
T Consensus 208 ~~~a~~il~wG~Np~~s~~~~~~~~~~~~~~~~~~~~~~~~~ggaklIvIDPr~t~tA~ 266 (822)
T TIGR02164 208 LENSDTIVLWANDPVKNLQVGWNCETHESFAYLAQLKEKVAAGEINVISIDPVVTKTQA 266 (822)
T ss_pred HHhCCEEEEECCCHHHhcCcccccCCCchHHHHHHHHHHhhCCCceEEEECCCCCchhh
Confidence 689999999999875321000 00 001 02 3799999998877543
No 148
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=40.81 E-value=31 Score=29.03 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=28.3
Q ss_pred HhhhhcCEEEEeCCCCCcccc-c-CCCC--CC-CCCCeEEEEcCChhhhh
Q psy14417 20 HALQNADLVLLLGARLNWMLH-F-GRAP--RF-KSNVKIIQVDLNAEELH 64 (120)
Q Consensus 20 ~~l~~aDlil~iG~~~~~~~~-~-~~~~--~~-~~~~~vi~Id~d~~~i~ 64 (120)
.-+.+||+||++|+.+.+... . .... .. ..++++|.||+......
T Consensus 202 ~Di~~ad~il~~G~Np~~~~p~~~~~i~~a~~~~~GakliviDPr~t~ta 251 (830)
T TIGR01706 202 DDFEAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKVKVVVLSTFTHRSF 251 (830)
T ss_pred hHHhhCCEEEEEcCCcchhCCHHHHHHHHHHhccCCCEEEEECCCCCchh
Confidence 345899999999998754311 0 0010 11 24789999998766554
No 149
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=40.11 E-value=37 Score=24.34 Aligned_cols=63 Identities=19% Similarity=0.235 Sum_probs=39.9
Q ss_pred hhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhh--hcc--------ccceEEecCHHHHHHHHHH
Q psy14417 22 LQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELH--NSV--------QAAVAIQSDVRLTVQQLKQ 86 (120)
Q Consensus 22 l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~--~~~--------~~~~~i~~d~~~~l~~L~~ 86 (120)
..++-.||=||+..... +..-....+++.+++.|+.++.... +.. ..+ .+.||+.++|..|..
T Consensus 77 ~~~ak~iLEiGT~~GyS-al~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~-~~~G~a~e~L~~l~~ 149 (247)
T PLN02589 77 LINAKNTMEIGVYTGYS-LLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKID-FREGPALPVLDQMIE 149 (247)
T ss_pred HhCCCEEEEEeChhhHH-HHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceE-EEeccHHHHHHHHHh
Confidence 35788999999876542 1110122345779999999885432 211 122 367999999998753
No 150
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=40.05 E-value=30 Score=24.91 Aligned_cols=23 Identities=39% Similarity=0.536 Sum_probs=18.0
Q ss_pred cChHHHHhhhhcCEEEEeCCCCC
Q psy14417 14 VSAARTHALQNADLVLLLGARLN 36 (120)
Q Consensus 14 ~G~~~~~~l~~aDlil~iG~~~~ 36 (120)
....-...+.+||++|..|..+.
T Consensus 40 p~p~d~~~l~~Adliv~~G~~~E 62 (276)
T cd01016 40 ATAGDVEKLQNADVVFYNGLHLE 62 (276)
T ss_pred CCHHHHHHHHhCCEEEEcCcChH
Confidence 33345678999999999998875
No 151
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=39.96 E-value=33 Score=24.92 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=16.7
Q ss_pred HHHHhhhhcCEEEEeCCCCC
Q psy14417 17 ARTHALQNADLVLLLGARLN 36 (120)
Q Consensus 17 ~~~~~l~~aDlil~iG~~~~ 36 (120)
.-...+.+||+||..|..+.
T Consensus 59 ~d~~~l~~Adlvv~~G~~~E 78 (287)
T cd01137 59 SDIKKLSKADLILYNGLNLE 78 (287)
T ss_pred HHHHHHHhCCEEEEcCCCcH
Confidence 45677899999999998775
No 152
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=39.77 E-value=38 Score=24.54 Aligned_cols=20 Identities=40% Similarity=0.652 Sum_probs=16.8
Q ss_pred HHHHhhhhcCEEEEeCCCCC
Q psy14417 17 ARTHALQNADLVLLLGARLN 36 (120)
Q Consensus 17 ~~~~~l~~aDlil~iG~~~~ 36 (120)
.-.+.|.+||+||..|..+.
T Consensus 45 ~d~~~l~~Adliv~~G~~le 64 (286)
T cd01019 45 SDARKLQEADLVVWIGPDLE 64 (286)
T ss_pred HHHHHHHhCCEEEEeCCCch
Confidence 44678999999999998875
No 153
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=39.34 E-value=13 Score=31.18 Aligned_cols=43 Identities=23% Similarity=0.149 Sum_probs=27.3
Q ss_pred HhhhhcCEEEEeCCCCCcccc-cC-CC-CCC-CCCCeEEEEcCChhh
Q psy14417 20 HALQNADLVLLLGARLNWMLH-FG-RA-PRF-KSNVKIIQVDLNAEE 62 (120)
Q Consensus 20 ~~l~~aDlil~iG~~~~~~~~-~~-~~-~~~-~~~~~vi~Id~d~~~ 62 (120)
.-+++||+||++|+...+... .. .. ... ..++++|.||+....
T Consensus 372 ~Die~ad~ill~G~N~~~~~P~~~~ri~~a~k~~GakiivIDPr~t~ 418 (797)
T PRK07860 372 ADLEKAPAVLLVGFEPEEESPIVFLRLRKAARKHGLKVYSIAPFATR 418 (797)
T ss_pred HHHHhCCEEEEEeCChhhhhHHHHHHHHHHHHhCCCEEEEECCCCch
Confidence 346899999999998755211 11 11 111 246899999986644
No 154
>COG1701 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.55 E-value=86 Score=22.33 Aligned_cols=40 Identities=20% Similarity=0.323 Sum_probs=31.2
Q ss_pred CCCeEEEEcCChhhhhhccccceEEecCHHHHHHHHHHHhh
Q psy14417 49 SNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 49 ~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~~l~~L~~~l~ 89 (120)
.+.++|-||.+|..-. ...+++.|+-++-.+++.|.+...
T Consensus 173 mGK~ViaIDLNPLSRT-ar~AsItIVDnivRA~p~li~~~~ 212 (256)
T COG1701 173 MGKTVIAIDLNPLSRT-ARKASITIVDNIVRAVPNLIEFVK 212 (256)
T ss_pred hCCeEEEEeCCccccc-cccCceeeeHHHHHHHHHHHHHHH
Confidence 4678999999995422 346889999998888888887765
No 155
>PRK14990 anaerobic dimethyl sulfoxide reductase subunit A; Provisional
Probab=37.97 E-value=25 Score=29.36 Aligned_cols=44 Identities=25% Similarity=0.283 Sum_probs=28.7
Q ss_pred hhhhcCEEEEeCCCCCcccccC-CC-C----CC-CCCCeEEEEcCChhhhh
Q psy14417 21 ALQNADLVLLLGARLNWMLHFG-RA-P----RF-KSNVKIIQVDLNAEELH 64 (120)
Q Consensus 21 ~l~~aDlil~iG~~~~~~~~~~-~~-~----~~-~~~~~vi~Id~d~~~i~ 64 (120)
-+++||+||++|+.+.+..... .. . .. ..++++|.||+......
T Consensus 228 D~~~ad~il~~G~N~~~t~~~~~~~~~~~~~a~~~~G~klivIDPr~t~ta 278 (814)
T PRK14990 228 DIENSKLVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTG 278 (814)
T ss_pred HHhhCCEEEEECCChHHhcCCCCcHHHHHHHHHHHCCCeEEEECCCCCCcc
Confidence 4578999999999875431111 01 1 11 13689999999877664
No 156
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=37.89 E-value=93 Score=21.24 Aligned_cols=40 Identities=15% Similarity=0.288 Sum_probs=31.5
Q ss_pred CCCeEEEEcCChhhhhhccccceEEecCHHHHHHHHHHHhh
Q psy14417 49 SNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 49 ~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~~l~~L~~~l~ 89 (120)
.+.++|-||.+|..- ....+++.|+-++-.+++.|.+...
T Consensus 109 mGK~VIaIDLNPLSR-Tar~AtitIVDni~RA~p~~~~~~~ 148 (178)
T PF02006_consen 109 MGKTVIAIDLNPLSR-TARTATITIVDNITRAIPNMIEFAR 148 (178)
T ss_pred cCCeEEEEeCCCccc-ccccCceeeehhHHHHHHHHHHHHH
Confidence 367899999999542 2356899999999999999888765
No 157
>COG0243 BisC Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]
Probab=37.84 E-value=29 Score=28.72 Aligned_cols=42 Identities=33% Similarity=0.449 Sum_probs=27.2
Q ss_pred hhhcCEEEEeCCCCCcc-cccCC----CCC-CCCCCeEEEEcCChhhh
Q psy14417 22 LQNADLVLLLGARLNWM-LHFGR----APR-FKSNVKIIQVDLNAEEL 63 (120)
Q Consensus 22 l~~aDlil~iG~~~~~~-~~~~~----~~~-~~~~~~vi~Id~d~~~i 63 (120)
+++||+||++|....+. +.... ... -..+.++|-||+-....
T Consensus 197 ~~~a~~iv~~G~N~~~~~~~~~~~~~~~~~~~~~~~kviviDP~~t~T 244 (765)
T COG0243 197 IENADLIVLWGSNPAEAHPVLGRGLLLAKAAKRSGAKVIVIDPRRTET 244 (765)
T ss_pred HhcCCEEEEECCChHHhCcchhhHHHHHHHhccCCCEEEEECCCCChh
Confidence 89999999999987652 11111 011 12356899999876543
No 158
>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.
Probab=37.69 E-value=9.8 Score=31.54 Aligned_cols=43 Identities=26% Similarity=0.387 Sum_probs=27.9
Q ss_pred hhhhcCEEEEeCCCCCccccc--CCCCCC-----CCCCeEEEEcCChhhh
Q psy14417 21 ALQNADLVLLLGARLNWMLHF--GRAPRF-----KSNVKIIQVDLNAEEL 63 (120)
Q Consensus 21 ~l~~aDlil~iG~~~~~~~~~--~~~~~~-----~~~~~vi~Id~d~~~i 63 (120)
=+++||+||++|+.+.+.... .....+ ..++++|.||+.....
T Consensus 211 D~~~a~~il~~G~N~~~s~~~~~~~~~~~~~~~~~~G~kiivvDPr~t~t 260 (797)
T TIGR02166 211 DIENSKLVVMFGNNPAETRMSGGGQTYYFLQALEKSNARVIVIDPRYTDT 260 (797)
T ss_pred HHHhCCEEEEECCCHHHhcCCCcchHHHHHHHHHHCCCeEEEECCCCCcc
Confidence 368899999999987543110 111111 2468999999987654
No 159
>cd08025 RNR_PFL_like_DUF711 Uncharacterized proteins with similarity to Ribonucleotide reductase and Pyruvate formate lyase. This subfamily contains Streptococcus pneumoniae Sp0239 and similar uncharacterized proteins. Sp0239 is structurally similar to ribonucleotide reductase (RNR) and pyruvate formate lyase (PFL), which are believed to have diverged from a common ancestor. RNR and PFL possess a ten-stranded alpha-beta barrel domain that hosts the active site, and are radical enzymes. RNRs are found in all organisms and provide the only mechanism by which nucleotides are converted to deoxynucleotides. PFL is an essential enzyme in anaerobic bacteria that catalyzes the conversion of pyruvate and CoA to acteylCoA and formate.
Probab=35.60 E-value=24 Score=27.17 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=22.3
Q ss_pred CCCCCccccChHHHHhhhhcCEEEEeCCCCCc
Q psy14417 6 VPDAHPNCVSAARTHALQNADLVLLLGARLNW 37 (120)
Q Consensus 6 ~~~~hp~~~G~~~~~~l~~aDlil~iG~~~~~ 37 (120)
.|++.|+|.|.+ .-+.++|++|.+|.+-..
T Consensus 187 ~~~d~PFmpgA~--Hg~ge~d~~i~VGvsgPg 216 (400)
T cd08025 187 APEDNPFMAGAF--HGVGEPDAVINVGVSGPG 216 (400)
T ss_pred CCCCCCCCCCcc--cCCCCCCcEEEEcCCCch
Confidence 477889988843 556788999999977543
No 160
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=34.28 E-value=30 Score=25.89 Aligned_cols=42 Identities=19% Similarity=0.319 Sum_probs=26.2
Q ss_pred hhhhcCEEEEeCCCCCcc-cccC-CC-CCC-CCCCeEEEEcCChhh
Q psy14417 21 ALQNADLVLLLGARLNWM-LHFG-RA-PRF-KSNVKIIQVDLNAEE 62 (120)
Q Consensus 21 ~l~~aDlil~iG~~~~~~-~~~~-~~-~~~-~~~~~vi~Id~d~~~ 62 (120)
-+++||+||++|+.+.+. +... .. ... ..++++|.||+....
T Consensus 142 di~~ad~il~~G~N~~~~~p~~~~~~~~~~~~~g~kli~idp~~~~ 187 (375)
T cd02773 142 GIEEADAVLLVGTNPRFEAPVLNARIRKAWLHGGLKVGVIGPPVDL 187 (375)
T ss_pred HHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCEEEEEcCcccc
Confidence 368999999999987432 1111 00 111 236899999986543
No 161
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=34.22 E-value=42 Score=22.80 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=16.6
Q ss_pred ccccCh--HHHHhhhhcC-EEEEeCCC
Q psy14417 11 PNCVSA--ARTHALQNAD-LVLLLGAR 34 (120)
Q Consensus 11 p~~~G~--~~~~~l~~aD-lil~iG~~ 34 (120)
|+..|. ....+++++| |||+||+.
T Consensus 14 P~H~GHl~vi~~al~~vDeliI~iGSa 40 (172)
T COG1056 14 PLHTGHLYVIKRALSKVDELIIVIGSA 40 (172)
T ss_pred CccHhHHHHHHHHHHhCCEEEEEEccC
Confidence 556664 3467788888 77888863
No 162
>KOG1352|consensus
Probab=33.07 E-value=47 Score=26.08 Aligned_cols=12 Identities=25% Similarity=0.623 Sum_probs=10.6
Q ss_pred hhcCEEEEeCCC
Q psy14417 23 QNADLVLLLGAR 34 (120)
Q Consensus 23 ~~aDlil~iG~~ 34 (120)
.++|+||-+||.
T Consensus 269 SNSD~iiYVGCG 280 (618)
T KOG1352|consen 269 SNSDAIIYVGCG 280 (618)
T ss_pred cCCCeEEEEccc
Confidence 589999999985
No 163
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=32.20 E-value=1.4e+02 Score=23.23 Aligned_cols=19 Identities=11% Similarity=0.286 Sum_probs=15.0
Q ss_pred cceEEecCHHHHHHHHHHH
Q psy14417 69 AAVAIQSDVRLTVQQLKQM 87 (120)
Q Consensus 69 ~~~~i~~d~~~~l~~L~~~ 87 (120)
...-+-||++..++++.+.
T Consensus 444 ~T~MlFGDAKk~V~~i~k~ 462 (463)
T COG1282 444 NTMMLFGDAKKSVDEILKA 462 (463)
T ss_pred CcEEEeccHHHHHHHHHhc
Confidence 3566889999999988754
No 164
>TIGR01580 narG respiratory nitrate reductase, alpha subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the alpha subunit for nitrate reductase I (narG) and nitrate reductase II (narZ) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model The seed members used to make the model include Nitrate reductases from Pseudomonas fluorescens, E.coli and B.subtilis. All seed members are experimentally characterized. Some unpublished nitrate reductases, that are shorter sequences, and probably fragments fall in between the noise and trusted cutoffs. P
Probab=31.72 E-value=46 Score=29.58 Aligned_cols=43 Identities=12% Similarity=0.107 Sum_probs=29.1
Q ss_pred hhhcCEEEEeCCCCCcccccCCCC----CCCCCCeEEEEcCChhhhhh
Q psy14417 22 LQNADLVLLLGARLNWMLHFGRAP----RFKSNVKIIQVDLNAEELHN 65 (120)
Q Consensus 22 l~~aDlil~iG~~~~~~~~~~~~~----~~~~~~~vi~Id~d~~~i~~ 65 (120)
+.+||+||+.|+...... +.... ....++++|.||++......
T Consensus 243 ~~nS~~II~WGsN~~~T~-~p~a~~l~eAr~rGaKvVVVDPr~t~tA~ 289 (1235)
T TIGR01580 243 WYNSSYIIAWGSNVPQTR-TPDAHFFTEVRYKGTKTVAITPDYAEIAK 289 (1235)
T ss_pred hhcCCEEEEECCChhhhc-chhHHHHHHHHHcCCeEEEEcCCCChhhH
Confidence 468999999999865431 11111 11247899999999877664
No 165
>KOG1439|consensus
Probab=31.11 E-value=47 Score=25.90 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=21.9
Q ss_pred cCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChh
Q psy14417 25 ADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAE 61 (120)
Q Consensus 25 aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~ 61 (120)
.| ||++|+.+.+.-.++-. ++ .+.+|+|||.++.
T Consensus 5 yD-vivlGTgl~ecilS~~L-s~-~gkkVLhiDrN~y 38 (440)
T KOG1439|consen 5 YD-VIVLGTGLTECILSGAL-SV-DGKKVLHIDRNDY 38 (440)
T ss_pred ee-EEEEcCCchhheeeeee-ee-cCcEEEEEeCCCC
Confidence 44 45689988776333311 22 5788999997763
No 166
>PLN02929 NADH kinase
Probab=30.92 E-value=76 Score=23.57 Aligned_cols=37 Identities=14% Similarity=0.307 Sum_probs=24.6
Q ss_pred hhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCCh
Q psy14417 21 ALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNA 60 (120)
Q Consensus 21 ~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~ 60 (120)
.+.++|+||++|.+-+...+.. .+..+.+|+-||.++
T Consensus 61 ~~~~~Dlvi~lGGDGT~L~aa~---~~~~~iPvlGIN~Gp 97 (301)
T PLN02929 61 PIRDVDLVVAVGGDGTLLQASH---FLDDSIPVLGVNSDP 97 (301)
T ss_pred ccCCCCEEEEECCcHHHHHHHH---HcCCCCcEEEEECCC
Confidence 4568999999998754321111 123457899999986
No 167
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=30.80 E-value=42 Score=20.50 Aligned_cols=44 Identities=7% Similarity=-0.019 Sum_probs=24.0
Q ss_pred HHhhhhcCEEEEeCCCCCcccccCC-C-CCCCCCCeEEEEcCChhh
Q psy14417 19 THALQNADLVLLLGARLNWMLHFGR-A-PRFKSNVKIIQVDLNAEE 62 (120)
Q Consensus 19 ~~~l~~aDlil~iG~~~~~~~~~~~-~-~~~~~~~~vi~Id~d~~~ 62 (120)
.+.|++||+||++=..+..-..+.. . ..+..+.+|+-+..|...
T Consensus 56 ~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 56 LEGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp HHHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECCCCT
T ss_pred HHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcCCcc
Confidence 4678999999998322110001110 0 112346788888877654
No 168
>COG2848 Uncharacterized conserved protein [Function unknown]
Probab=30.35 E-value=31 Score=26.70 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=20.7
Q ss_pred CCCCccccChHHHHhhhhcCEEEEeCCCCC
Q psy14417 7 PDAHPNCVSAARTHALQNADLVLLLGARLN 36 (120)
Q Consensus 7 ~~~hp~~~G~~~~~~l~~aDlil~iG~~~~ 36 (120)
+++.|++.| +..=+.++|+|+.+|.+-.
T Consensus 187 ~ed~Pfmpg--Afhg~Ge~d~vinvgvsgp 214 (445)
T COG2848 187 VEDNPFMPG--AFHGVGEADAVINVGVSGP 214 (445)
T ss_pred cccCCCcCc--cccCCCCcceEEEEeccCc
Confidence 577888887 3344678999999997643
No 169
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=30.24 E-value=36 Score=26.31 Aligned_cols=18 Identities=39% Similarity=0.610 Sum_probs=14.6
Q ss_pred HhhhhcCEEEEeCCCCCc
Q psy14417 20 HALQNADLVLLLGARLNW 37 (120)
Q Consensus 20 ~~l~~aDlil~iG~~~~~ 37 (120)
.-+++||+||++|+.+.+
T Consensus 141 ~di~~ad~il~~G~n~~~ 158 (472)
T cd02771 141 RDIESADAVLVLGEDLTQ 158 (472)
T ss_pred HHHHhCCEEEEEeCCccc
Confidence 346799999999998754
No 170
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=29.97 E-value=41 Score=21.95 Aligned_cols=68 Identities=13% Similarity=0.088 Sum_probs=37.3
Q ss_pred HHHHhhhhcCEEEEeCCCCCcccccCCC-CCCCCCCeEEEEcCChhhhhhcc---c---cceEEecCHHHHHHHHH
Q psy14417 17 ARTHALQNADLVLLLGARLNWMLHFGRA-PRFKSNVKIIQVDLNAEELHNSV---Q---AAVAIQSDVRLTVQQLK 85 (120)
Q Consensus 17 ~~~~~l~~aDlil~iG~~~~~~~~~~~~-~~~~~~~~vi~Id~d~~~i~~~~---~---~~~~i~~d~~~~l~~L~ 85 (120)
...+++.+||+|++-|+.+..- +.... ..-.+.+.++-+.+...-..... . ..-..+-|...+++.+.
T Consensus 55 ~~~~~l~~aD~viiTGsTlvN~-Ti~~iL~~~~~~~~vil~GpS~~~~P~~l~~~Gv~~v~g~~v~d~~~~~~~i~ 129 (147)
T PF04016_consen 55 DAEEILPWADVVIITGSTLVNG-TIDDILELARNAREVILYGPSAPLHPEALFDYGVTYVGGSRVVDPEKVLRAIS 129 (147)
T ss_dssp GHHHHGGG-SEEEEECHHCCTT-THHHHHHHTTTSSEEEEESCCGGS-GGGGCCTT-SEEEEEEES-HHHHHHHHC
T ss_pred HHHHHHccCCEEEEEeeeeecC-CHHHHHHhCccCCeEEEEecCchhhHHHHHhCCCCEEEEEEEeCHHHHHHHHH
Confidence 4678899999999999887432 11101 11123567888887764443211 1 12233567777776654
No 171
>PRK06136 uroporphyrin-III C-methyltransferase; Reviewed
Probab=29.58 E-value=39 Score=23.68 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=16.6
Q ss_pred CccccChHHHHhhhhcCEEEEe
Q psy14417 10 HPNCVSAARTHALQNADLVLLL 31 (120)
Q Consensus 10 hp~~~G~~~~~~l~~aDlil~i 31 (120)
+|-++-..+.++|++||+|++-
T Consensus 14 dp~~lT~~A~~~L~~advI~~~ 35 (249)
T PRK06136 14 DPDLITLKGVRLLEQADVVLYD 35 (249)
T ss_pred ChHHHHHHHHHHHhcCCEEEEc
Confidence 3544555688999999999973
No 172
>PRK05576 cobalt-precorrin-2 C(20)-methyltransferase; Validated
Probab=29.16 E-value=38 Score=23.62 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=17.8
Q ss_pred CCccccChHHHHhhhhcCEEEEeCC
Q psy14417 9 AHPNCVSAARTHALQNADLVLLLGA 33 (120)
Q Consensus 9 ~hp~~~G~~~~~~l~~aDlil~iG~ 33 (120)
++|-++...+.++|++||+|+.-.+
T Consensus 12 G~~~~lT~~a~~~l~~advV~~~~~ 36 (229)
T PRK05576 12 GDPELLTVKAARILEEADVVYAPAS 36 (229)
T ss_pred CChHHHHHHHHHHHhcCCEEEEECC
Confidence 3444444467899999999997643
No 173
>KOG1687|consensus
Probab=29.12 E-value=34 Score=22.49 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=12.9
Q ss_pred hhhcCEEEEeCCCCCc
Q psy14417 22 LQNADLVLLLGARLNW 37 (120)
Q Consensus 22 l~~aDlil~iG~~~~~ 37 (120)
-.+|||||+.|+-.+-
T Consensus 69 PRQaD~iivAGTlTnK 84 (168)
T KOG1687|consen 69 PRQADLIIVAGTLTNK 84 (168)
T ss_pred CccccEEEEeccchhh
Confidence 3689999999986553
No 174
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=28.95 E-value=46 Score=22.29 Aligned_cols=25 Identities=12% Similarity=0.286 Sum_probs=18.0
Q ss_pred ccccCh--HHHHhhhhcCEEEE-eCCCC
Q psy14417 11 PNCVSA--ARTHALQNADLVLL-LGARL 35 (120)
Q Consensus 11 p~~~G~--~~~~~l~~aDlil~-iG~~~ 35 (120)
|+..|. .+..+++.+|-|++ +|+.-
T Consensus 10 P~H~GHl~ii~~a~~~~D~lii~i~s~~ 37 (165)
T TIGR01527 10 PFHLGHLEVIKKIAEEVDELIIGIGSAQ 37 (165)
T ss_pred CCCHHHHHHHHHHHHHCCEEEEEEcCCC
Confidence 666674 46778888998877 67654
No 175
>COG2403 Predicted GTPase [General function prediction only]
Probab=28.74 E-value=2.1e+02 Score=22.41 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=30.6
Q ss_pred CCCCCccccCh-H---HHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCCh
Q psy14417 6 VPDAHPNCVSA-A---RTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNA 60 (120)
Q Consensus 6 ~~~~hp~~~G~-~---~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~ 60 (120)
++..+.-++|+ | ..+..+.||+||.=|..-+ ++.+.++.-|+-+|...
T Consensus 202 I~tg~~vlAGvdy~~vlke~~~~aD~IlwdGgnnd-------fPfvkpd~~Ivvvda~r 253 (449)
T COG2403 202 IPTGGGVLAGVDYGTVLKEGEKEADFILWDGGNND-------FPFVKPDLHIVVVDALR 253 (449)
T ss_pred cccccceEeeeeHHHHHHHHhhhccEEEEeCCCCC-------CCcccCCeeEEEecCCC
Confidence 34445566665 2 3567788999999987543 23345666677777553
No 176
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=28.68 E-value=55 Score=24.21 Aligned_cols=19 Identities=21% Similarity=0.417 Sum_probs=14.6
Q ss_pred HHHhhhhcCEEEEeCCCCC
Q psy14417 18 RTHALQNADLVLLLGARLN 36 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~ 36 (120)
..++..++|++|++|..-+
T Consensus 206 vk~la~~~Dl~iVVG~~nS 224 (294)
T COG0761 206 VKELAPEVDLVIVVGSKNS 224 (294)
T ss_pred HHHHhhcCCEEEEECCCCC
Confidence 3456678999999997543
No 177
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.42 E-value=40 Score=20.13 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=11.6
Q ss_pred HHHhhhhcCEEEEe
Q psy14417 18 RTHALQNADLVLLL 31 (120)
Q Consensus 18 ~~~~l~~aDlil~i 31 (120)
....+.+||+||++
T Consensus 42 l~~~i~~aD~VIv~ 55 (97)
T PF10087_consen 42 LPSKIKKADLVIVF 55 (97)
T ss_pred HHHhcCCCCEEEEE
Confidence 35678899999998
No 178
>PRK00019 rpmE 50S ribosomal protein L31; Reviewed
Probab=28.35 E-value=29 Score=20.04 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=8.8
Q ss_pred CCCCCCccccCh
Q psy14417 5 VVPDAHPNCVSA 16 (120)
Q Consensus 5 ~~~~~hp~~~G~ 16 (120)
+-+..||+|.|-
T Consensus 37 i~s~~HPFyTG~ 48 (72)
T PRK00019 37 VCSKCHPFYTGK 48 (72)
T ss_pred eCCCCCCcCcCC
Confidence 345789999884
No 179
>PRK13761 hypothetical protein; Provisional
Probab=28.27 E-value=1.5e+02 Score=21.28 Aligned_cols=40 Identities=18% Similarity=0.294 Sum_probs=30.9
Q ss_pred CCCeEEEEcCChhhhhhccccceEEecCHHHHHHHHHHHhh
Q psy14417 49 SNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 49 ~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~~l~~L~~~l~ 89 (120)
.+.++|-||.+|..- ....+++.|+-++-.+++.|.+...
T Consensus 170 mGK~VI~IDLNPLSR-Tar~A~itIVDni~RA~p~m~~~~~ 209 (248)
T PRK13761 170 MGKTVIAIDLNPLSR-TARTATITIVDNITRAVPNMTEYAR 209 (248)
T ss_pred cCCeEEEEeCCCccc-ccccCceeeehhHHHHHHHHHHHHH
Confidence 367899999999542 2356899999999888888887664
No 180
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=27.99 E-value=56 Score=21.63 Aligned_cols=31 Identities=13% Similarity=0.294 Sum_probs=20.1
Q ss_pred CCCCCC-CccccCh--HHHHhhhhcCEEEE-eCCC
Q psy14417 4 GVVPDA-HPNCVSA--ARTHALQNADLVLL-LGAR 34 (120)
Q Consensus 4 g~~~~~-hp~~~G~--~~~~~l~~aDlil~-iG~~ 34 (120)
|+|..+ .|...|. .+..+++.+|-|++ +|+.
T Consensus 2 ~v~~G~FdP~H~GHl~~i~~a~~~~d~l~v~v~s~ 36 (163)
T cd02166 2 ALFIGRFQPFHLGHLKVIKWILEEVDELIIGIGSA 36 (163)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHCCEEEEEecCC
Confidence 334433 3666775 46778888998876 7765
No 181
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.
Probab=27.91 E-value=54 Score=22.70 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=16.5
Q ss_pred CccccChHHHHhhhhcCEEEE
Q psy14417 10 HPNCVSAARTHALQNADLVLL 30 (120)
Q Consensus 10 hp~~~G~~~~~~l~~aDlil~ 30 (120)
+|-++-..+.++|++||+|+.
T Consensus 11 ~~~~lT~~a~~~l~~advI~~ 31 (236)
T TIGR01469 11 DPELLTLKALRLLQEADVVLY 31 (236)
T ss_pred ChHHhHHHHHHHHHhCCEEEE
Confidence 354555568899999999998
No 182
>PF01197 Ribosomal_L31: Ribosomal protein L31; InterPro: IPR002150 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L31 is one of the proteins from the large ribosomal subunit. L31 is a protein of 66 to 97 amino-acid residues which has only been found so far in bacteria and in some plant and algal chloroplasts.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3D5D_4 3PYO_1 3D5B_4 3PYV_1 3PYT_1 3MRZ_1 3MS1_1 3PYR_1 3F1F_4 3F1H_4 ....
Probab=27.76 E-value=40 Score=19.18 Aligned_cols=11 Identities=18% Similarity=0.504 Sum_probs=8.6
Q ss_pred CCCCCCccccC
Q psy14417 5 VVPDAHPNCVS 15 (120)
Q Consensus 5 ~~~~~hp~~~G 15 (120)
+-+..||+|.|
T Consensus 38 i~s~~HPfytG 48 (69)
T PF01197_consen 38 ICSNCHPFYTG 48 (69)
T ss_dssp SCSSSSCTTCS
T ss_pred ecCCCCEEEcC
Confidence 44678999998
No 183
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=27.67 E-value=50 Score=22.78 Aligned_cols=25 Identities=24% Similarity=0.545 Sum_probs=18.8
Q ss_pred CCccccChHHHHhhhhcCEEEEeCC
Q psy14417 9 AHPNCVSAARTHALQNADLVLLLGA 33 (120)
Q Consensus 9 ~hp~~~G~~~~~~l~~aDlil~iG~ 33 (120)
++|-++...+.++|++||+|+.-+.
T Consensus 9 G~~~~lT~~a~~~l~~advV~~~~~ 33 (229)
T TIGR01465 9 GDPDLITVKGRKLLESADVILYAGS 33 (229)
T ss_pred CCcHHHHHHHHHHHHhCCEEEEeCC
Confidence 3455555678899999999997654
No 184
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=27.26 E-value=54 Score=20.73 Aligned_cols=15 Identities=47% Similarity=0.567 Sum_probs=12.0
Q ss_pred HHhhhhcCEEEEeCC
Q psy14417 19 THALQNADLVLLLGA 33 (120)
Q Consensus 19 ~~~l~~aDlil~iG~ 33 (120)
.++++++|+||..|.
T Consensus 53 ~~~~~~~DlvittGG 67 (133)
T cd00758 53 IEASREADLVLTTGG 67 (133)
T ss_pred HHHHhcCCEEEECCC
Confidence 456678999999985
No 185
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=27.08 E-value=59 Score=22.82 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=19.4
Q ss_pred CCCccccChHHHHhhhhcCEEEEe
Q psy14417 8 DAHPNCVSAARTHALQNADLVLLL 31 (120)
Q Consensus 8 ~~hp~~~G~~~~~~l~~aDlil~i 31 (120)
++.|-|++..+.++|++||+|+.-
T Consensus 9 p~~~~~Lt~~A~~~I~~A~vV~G~ 32 (210)
T COG2241 9 PGGPEGLTLAAIEAIRRADVVAGS 32 (210)
T ss_pred CCChhhhcHHHHHHHHhCCEEeec
Confidence 456778888899999999988654
No 186
>KOG4125|consensus
Probab=26.93 E-value=37 Score=27.05 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=19.6
Q ss_pred CCccccChHHHHhhhhcCEEEEe
Q psy14417 9 AHPNCVSAARTHALQNADLVLLL 31 (120)
Q Consensus 9 ~hp~~~G~~~~~~l~~aDlil~i 31 (120)
-||-|.|+-....+++||++|+.
T Consensus 482 ~HPey~g~V~~~~ikqad~~l~~ 504 (682)
T KOG4125|consen 482 IHPEYSGMVSSVEIKQADVTLMV 504 (682)
T ss_pred cChhhccccchhhhhhcceEEEe
Confidence 48999998778899999998864
No 187
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=26.84 E-value=65 Score=23.62 Aligned_cols=19 Identities=16% Similarity=0.392 Sum_probs=15.0
Q ss_pred HHHhhhhcCEEEEeCCCCC
Q psy14417 18 RTHALQNADLVLLLGARLN 36 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~ 36 (120)
+.++.+++|++|+||..-+
T Consensus 202 ~~~la~~vD~miVVGg~nS 220 (280)
T TIGR00216 202 VKELAPEVDLMIVIGGKNS 220 (280)
T ss_pred HHHHHhhCCEEEEECCCCC
Confidence 4566789999999997643
No 188
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=26.83 E-value=48 Score=25.08 Aligned_cols=43 Identities=19% Similarity=0.320 Sum_probs=26.8
Q ss_pred HhhhhcCEEEEeCCCCCcccc-cC-CC-CCCCCCCeEEEEcCChhh
Q psy14417 20 HALQNADLVLLLGARLNWMLH-FG-RA-PRFKSNVKIIQVDLNAEE 62 (120)
Q Consensus 20 ~~l~~aDlil~iG~~~~~~~~-~~-~~-~~~~~~~~vi~Id~d~~~ 62 (120)
.-+++||+||++|+.+.+... .. .. .....++++|.||+-...
T Consensus 148 ~di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~g~k~i~idp~~~~ 193 (414)
T cd02772 148 AEISELDRVLVIGSNLRKEHPLLAQRLRQAVKKGAKLSAINPADDD 193 (414)
T ss_pred HHHHhCCEEEEECCCccccchHHHHHHHHHHHcCCEEEEEeCccch
Confidence 346889999999998753211 10 00 011247899999986544
No 189
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=25.89 E-value=68 Score=21.55 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=18.1
Q ss_pred CccccChHHHHhhhhcCEEEEeC
Q psy14417 10 HPNCVSAARTHALQNADLVLLLG 32 (120)
Q Consensus 10 hp~~~G~~~~~~l~~aDlil~iG 32 (120)
.|-++-..+.++|++||+|+.-.
T Consensus 11 ~~~~lT~~a~~~l~~advv~~~~ 33 (210)
T PF00590_consen 11 DPDLLTLRALEALKNADVVIGPE 33 (210)
T ss_dssp SGGGSBHHHHHHHHHSSEEEEET
T ss_pred CHHHHHHHHHHHHHhCCcccccc
Confidence 35555567889999999997776
No 190
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=25.76 E-value=49 Score=27.33 Aligned_cols=40 Identities=28% Similarity=0.476 Sum_probs=24.9
Q ss_pred hhhhcCEEEEeCCCCCcc-cccC-CC-CCCCCC-CeEEEEcCCh
Q psy14417 21 ALQNADLVLLLGARLNWM-LHFG-RA-PRFKSN-VKIIQVDLNA 60 (120)
Q Consensus 21 ~l~~aDlil~iG~~~~~~-~~~~-~~-~~~~~~-~~vi~Id~d~ 60 (120)
-+++||+||++|+.+.+. +... .. ..+..+ .+|+.||+..
T Consensus 361 dIe~AD~IlliG~Np~~eaPvl~~rirka~~~g~~kIivIdpr~ 404 (687)
T PRK09130 361 GIEEADAILLIGANPRFEAPVLNARIRKRWRAGGFKIAVIGEQA 404 (687)
T ss_pred HHHhCCEEEEEccCcccccHHHHHHHHHHHHcCCCeEEEEcCcc
Confidence 468999999999987542 1110 00 112234 5999999764
No 191
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=25.37 E-value=99 Score=20.07 Aligned_cols=39 Identities=13% Similarity=0.186 Sum_probs=24.3
Q ss_pred HHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCCh
Q psy14417 18 RTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNA 60 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~ 60 (120)
..+.+++||+|++.=....... ...+.+++-+|.++++.
T Consensus 65 l~~~v~~ADIVvsAtg~~~~i~----~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 65 LQSKVHDADVVVVGSPKPEKVP----TEWIKPGATVINCSPTK 103 (140)
T ss_pred HHHHHhhCCEEEEecCCCCccC----HHHcCCCCEEEEcCCCc
Confidence 3568899999887654443321 12245677777766654
No 192
>TIGR00105 L31 ribosomal protein L31. This family consists exclusively of bacterial (and organellar) 50S ribosomal protein L31. In some species, such as Bacillus subtilis, this protein exists in two forms (RpmE and YtiA), one of which (RpmE) contains a pair of motifs, CXC and CXXC, for binding zinc.
Probab=25.35 E-value=37 Score=19.29 Aligned_cols=11 Identities=18% Similarity=0.347 Sum_probs=8.2
Q ss_pred CCCCCccccCh
Q psy14417 6 VPDAHPNCVSA 16 (120)
Q Consensus 6 ~~~~hp~~~G~ 16 (120)
-+..||+|.|.
T Consensus 38 ~s~~HPfyTG~ 48 (68)
T TIGR00105 38 CSKCHPFYTGK 48 (68)
T ss_pred CCCCcccCCCc
Confidence 35679999983
No 193
>PF09861 DUF2088: Domain of unknown function (DUF2088); InterPro: IPR018657 This domain, found in various hypothetical proteins, has no known function. ; PDB: 2YJG_B.
Probab=24.87 E-value=41 Score=23.35 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=13.3
Q ss_pred HHHHhhhhcCEEEEeCCCC
Q psy14417 17 ARTHALQNADLVLLLGARL 35 (120)
Q Consensus 17 ~~~~~l~~aDlil~iG~~~ 35 (120)
+.++.+-+||++|.+|.-.
T Consensus 146 ~inr~~~eAD~iI~iG~I~ 164 (204)
T PF09861_consen 146 YINRHVAEADLIILIGRIE 164 (204)
T ss_dssp EEEHHHHH-SEEEEEEE--
T ss_pred EEchHHHhCCEEEEECCeE
Confidence 4567788999999999654
No 194
>PRK05313 hypothetical protein; Provisional
Probab=24.36 E-value=47 Score=26.07 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=22.0
Q ss_pred CCCCCccccChHHHHhhhhcCEEEEeCCCCCc
Q psy14417 6 VPDAHPNCVSAARTHALQNADLVLLLGARLNW 37 (120)
Q Consensus 6 ~~~~hp~~~G~~~~~~l~~aDlil~iG~~~~~ 37 (120)
.|+++|++.|.+ .-..+.|+++.+|.+-..
T Consensus 193 ~~~d~PFmpgA~--Hg~ge~d~vinVGvSgPg 222 (452)
T PRK05313 193 APEDNPFMAGAF--HGVGEPDAVINVGVSGPG 222 (452)
T ss_pred CCCCCCCCCCcc--ccCCCCCcEEEEeecCCh
Confidence 478889998843 245678999999987543
No 195
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=24.11 E-value=69 Score=23.49 Aligned_cols=19 Identities=11% Similarity=0.350 Sum_probs=13.9
Q ss_pred HHHhhhhcCEEEEeCCCCC
Q psy14417 18 RTHALQNADLVLLLGARLN 36 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~ 36 (120)
+.++.+++|++|+||..-+
T Consensus 203 ~~~La~~vD~miVIGg~~S 221 (281)
T PF02401_consen 203 ARELAKEVDAMIVIGGKNS 221 (281)
T ss_dssp HHHHHCCSSEEEEES-TT-
T ss_pred HHHHHhhCCEEEEecCCCC
Confidence 4566789999999998654
No 196
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=23.79 E-value=64 Score=19.08 Aligned_cols=36 Identities=22% Similarity=0.351 Sum_probs=23.5
Q ss_pred HHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCCh
Q psy14417 19 THALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNA 60 (120)
Q Consensus 19 ~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~ 60 (120)
.+-+..||+||++|.....- ...| .+.+++++.++.
T Consensus 33 ~~~i~~Ad~VIia~d~~i~~-----~~rf-~gk~v~~~s~~~ 68 (88)
T PRK10474 33 AEDVASADMVILTKDIGIKF-----EERF-AGKTIVRVNISD 68 (88)
T ss_pred HHHHHhCCEEEEEecCCCcc-----hhcc-CCCceEEecHHH
Confidence 46789999999999765211 1223 355788887544
No 197
>CHL00136 rpl31 ribosomal protein L31; Validated
Probab=23.78 E-value=40 Score=19.26 Aligned_cols=12 Identities=17% Similarity=0.340 Sum_probs=8.6
Q ss_pred CCCCCCccccCh
Q psy14417 5 VVPDAHPNCVSA 16 (120)
Q Consensus 5 ~~~~~hp~~~G~ 16 (120)
+-+..||+|.|-
T Consensus 37 v~s~~HPfyTG~ 48 (68)
T CHL00136 37 IWSGNHPFYTGS 48 (68)
T ss_pred eCCCCCccCcCC
Confidence 346778998883
No 198
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=23.59 E-value=74 Score=20.27 Aligned_cols=15 Identities=47% Similarity=0.663 Sum_probs=12.3
Q ss_pred HHhhhhcCEEEEeCC
Q psy14417 19 THALQNADLVLLLGA 33 (120)
Q Consensus 19 ~~~l~~aDlil~iG~ 33 (120)
..+++++|+||..|.
T Consensus 51 ~~~~~~~D~VittGG 65 (144)
T PF00994_consen 51 RRALDRADLVITTGG 65 (144)
T ss_dssp HHHHHTTSEEEEESS
T ss_pred HhhhccCCEEEEcCC
Confidence 456688999999994
No 199
>PRK01397 50S ribosomal protein L31; Provisional
Probab=23.43 E-value=43 Score=19.68 Aligned_cols=12 Identities=25% Similarity=0.166 Sum_probs=8.7
Q ss_pred CCCCCCccccCh
Q psy14417 5 VVPDAHPNCVSA 16 (120)
Q Consensus 5 ~~~~~hp~~~G~ 16 (120)
+-+..||+|.|-
T Consensus 36 i~s~~HPFyTG~ 47 (78)
T PRK01397 36 VDFRKHPAWNKD 47 (78)
T ss_pred eCCCCCCcCcCC
Confidence 345689999883
No 200
>TIGR01467 cobI_cbiL precorrin-2 C20-methyltransferase. This model represents precorrin-2 C20-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis.
Probab=23.36 E-value=62 Score=22.45 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=18.0
Q ss_pred CCccccChHHHHhhhhcCEEEEeCC
Q psy14417 9 AHPNCVSAARTHALQNADLVLLLGA 33 (120)
Q Consensus 9 ~hp~~~G~~~~~~l~~aDlil~iG~ 33 (120)
.+|-++-..+.++|++||+|++-..
T Consensus 11 G~~~~lT~~a~~~l~~advV~~~~~ 35 (230)
T TIGR01467 11 GDPELITVKALEALRSADVIAVPAS 35 (230)
T ss_pred CCcHHHHHHHHHHHhhCCEEEEeCC
Confidence 3444444567899999999997543
No 201
>PRK05765 precorrin-3B C17-methyltransferase; Provisional
Probab=23.24 E-value=73 Score=22.55 Aligned_cols=24 Identities=4% Similarity=0.155 Sum_probs=17.2
Q ss_pred CCccccChHHHHhhhhcCEEEEeC
Q psy14417 9 AHPNCVSAARTHALQNADLVLLLG 32 (120)
Q Consensus 9 ~hp~~~G~~~~~~l~~aDlil~iG 32 (120)
++|-++-..+.++|++||+|++-.
T Consensus 12 Gdp~~lT~ra~~~L~~AdvV~~~~ 35 (246)
T PRK05765 12 GSKEQRTIKAQEAIEKSNVIIGYN 35 (246)
T ss_pred CChHHhhHHHHHHHHhCCEEEEcc
Confidence 344444456789999999999543
No 202
>PF11349 DUF3151: Protein of unknown function (DUF3151); InterPro: IPR014487 This group represents an uncharacterised conserved protein.
Probab=23.04 E-value=73 Score=20.55 Aligned_cols=16 Identities=31% Similarity=0.343 Sum_probs=13.8
Q ss_pred CCCCCCCCCCccccCh
Q psy14417 1 MGKGVVPDAHPNCVSA 16 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~ 16 (120)
.|.|.+|.+|.-+-|+
T Consensus 76 kG~GPVPw~HePNrGf 91 (129)
T PF11349_consen 76 KGHGPVPWSHEPNRGF 91 (129)
T ss_pred CCCCCCCCccCCccHH
Confidence 4789999999888886
No 203
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=22.73 E-value=73 Score=19.08 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=23.3
Q ss_pred HhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCCh
Q psy14417 20 HALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNA 60 (120)
Q Consensus 20 ~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~ 60 (120)
+.+..||+||++|....+. ..| .+.++++..++.
T Consensus 49 ~~i~~Ad~vi~~~~~~~~~------~rf-~gk~v~~~~~~~ 82 (96)
T cd05569 49 EDIAEADAVILAADVPVDD------ERF-AGKRVYEVSVAE 82 (96)
T ss_pred HHHhhCCEEEEecCCCCch------hhh-CCCeEEEecHHH
Confidence 6789999999999765432 223 355888877653
No 204
>PRK04160 diphthine synthase; Provisional
Probab=22.61 E-value=91 Score=22.18 Aligned_cols=22 Identities=27% Similarity=0.226 Sum_probs=17.3
Q ss_pred CCccccChHHHHhhhhcCEEEE
Q psy14417 9 AHPNCVSAARTHALQNADLVLL 30 (120)
Q Consensus 9 ~hp~~~G~~~~~~l~~aDlil~ 30 (120)
++|-++-..+.++|++||+|+.
T Consensus 10 G~pd~lT~~a~~~L~~advv~~ 31 (258)
T PRK04160 10 YDERDITLKGLEALRNADKVYA 31 (258)
T ss_pred CChhhhCHHHHHHHHcCCEEEE
Confidence 4555566678899999999995
No 205
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=22.48 E-value=88 Score=23.20 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=15.0
Q ss_pred HHHhhhhcCEEEEeCCCCC
Q psy14417 18 RTHALQNADLVLLLGARLN 36 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~ 36 (120)
+.++.+++|++|+||..-+
T Consensus 204 ~~~La~~vD~miVVGg~~S 222 (298)
T PRK01045 204 VKELAPQADLVIVVGSKNS 222 (298)
T ss_pred HHHHHhhCCEEEEECCCCC
Confidence 4566789999999997644
No 206
>PF00766 ETF_alpha: Electron transfer flavoprotein FAD-binding domain; InterPro: IPR014731 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the C-terminal domain of the alpha subunit of both Group I and Group II ETFs.; PDB: 1O96_D 3CLR_D 1O97_D 3CLT_D 3CLU_D 3CLS_D 2A1U_A 2A1T_R 1EFV_A 1EFP_C ....
Probab=22.46 E-value=56 Score=19.58 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=10.8
Q ss_pred hhhcCEEEEeCCCCC
Q psy14417 22 LQNADLVLLLGARLN 36 (120)
Q Consensus 22 l~~aDlil~iG~~~~ 36 (120)
|++||+|+++|--+.
T Consensus 4 L~~A~~VV~~GrG~~ 18 (86)
T PF00766_consen 4 LEEAEVVVAGGRGVG 18 (86)
T ss_dssp TCCSSEEEEE-GGG-
T ss_pred cccCCEEEEcCCCCC
Confidence 678999999997654
No 207
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=22.44 E-value=57 Score=20.88 Aligned_cols=9 Identities=44% Similarity=0.888 Sum_probs=6.8
Q ss_pred hcCEEEEeC
Q psy14417 24 NADLVLLLG 32 (120)
Q Consensus 24 ~aDlil~iG 32 (120)
.||+||++|
T Consensus 1 ~aD~ivVlG 9 (155)
T PF02698_consen 1 KADAIVVLG 9 (155)
T ss_dssp --SEEEEES
T ss_pred CCcEEEECC
Confidence 489999999
No 208
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=22.20 E-value=70 Score=18.57 Aligned_cols=15 Identities=40% Similarity=0.693 Sum_probs=11.9
Q ss_pred hhhcCEEEEeCCCCC
Q psy14417 22 LQNADLVLLLGARLN 36 (120)
Q Consensus 22 l~~aDlil~iG~~~~ 36 (120)
...+|+.|+||.+|.
T Consensus 75 ~~~~~v~vvlG~Df~ 89 (90)
T PF13399_consen 75 RQDADVVVVLGKDFQ 89 (90)
T ss_pred CCCCCEEEEEeCCcC
Confidence 456899999998764
No 209
>PRK05787 cobalt-precorrin-6Y C(5)-methyltransferase; Validated
Probab=21.87 E-value=79 Score=21.40 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=16.0
Q ss_pred CccccChHHHHhhhhcCEEEE
Q psy14417 10 HPNCVSAARTHALQNADLVLL 30 (120)
Q Consensus 10 hp~~~G~~~~~~l~~aDlil~ 30 (120)
+|-++...+.++|++||+|+.
T Consensus 11 ~~~~lT~~a~~~l~~advv~~ 31 (210)
T PRK05787 11 DPEYLTLKALEAIRKADVVVG 31 (210)
T ss_pred ChHHhhHHHHHHHHhCCEEEE
Confidence 344455568899999999995
No 210
>TIGR02467 CbiE precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit. This model recognizes the CbiE methylase which is responsible, in part (along with CbiT), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiT subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=21.57 E-value=93 Score=21.14 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=17.4
Q ss_pred CCccccChHHHHhhhhcCEEEE
Q psy14417 9 AHPNCVSAARTHALQNADLVLL 30 (120)
Q Consensus 9 ~hp~~~G~~~~~~l~~aDlil~ 30 (120)
+.|-++...+.++|++||+|+.
T Consensus 7 G~~~~lT~~a~~~L~~advv~~ 28 (204)
T TIGR02467 7 GGPELLTPAAIEAIRKADLVVG 28 (204)
T ss_pred CChhhcCHHHHHHHHhCCEEEe
Confidence 3466666678899999999985
No 211
>TIGR01466 cobJ_cbiH precorrin-3B C17-methyltransferase. This model represents precorrin-3B C17-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, EC 2.1.1.133). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products. Members of this family may appear as fusion proteins with other enzymes of cobalamin biosynthesis.
Probab=21.43 E-value=69 Score=22.32 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=16.8
Q ss_pred CccccChHHHHhhhhcCEEEEeC
Q psy14417 10 HPNCVSAARTHALQNADLVLLLG 32 (120)
Q Consensus 10 hp~~~G~~~~~~l~~aDlil~iG 32 (120)
+|-++-..+.++|++||+|+.-.
T Consensus 10 ~~~~lT~~A~~~i~~AdvV~~~~ 32 (239)
T TIGR01466 10 AEELMTPEAKEALAEADVIVGYK 32 (239)
T ss_pred ChHHHHHHHHHHHHhCCEEEECc
Confidence 34444446789999999999654
No 212
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=21.23 E-value=96 Score=22.78 Aligned_cols=19 Identities=11% Similarity=0.412 Sum_probs=14.7
Q ss_pred HHHhhhhcCEEEEeCCCCC
Q psy14417 18 RTHALQNADLVLLLGARLN 36 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~ 36 (120)
+.++.+++|++|++|..-+
T Consensus 203 ~~~La~~vD~miVVGg~~S 221 (281)
T PRK12360 203 AKELSKEVDVMIVIGGKHS 221 (281)
T ss_pred HHHHHHhCCEEEEecCCCC
Confidence 3456678999999998644
No 213
>PRK05991 precorrin-3B C17-methyltransferase; Provisional
Probab=20.95 E-value=89 Score=22.13 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=17.0
Q ss_pred CCccccChHHHHhhhhcCEEEEe
Q psy14417 9 AHPNCVSAARTHALQNADLVLLL 31 (120)
Q Consensus 9 ~hp~~~G~~~~~~l~~aDlil~i 31 (120)
++|-++...+.++|++||+|+..
T Consensus 13 G~p~~lT~~a~~~l~~AdvV~~~ 35 (250)
T PRK05991 13 GNPEQMTPEALAAVEAATDFFGY 35 (250)
T ss_pred CChhhhhHHHHHHHHhCCEEEEc
Confidence 34444555688999999999964
No 214
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=20.91 E-value=73 Score=20.50 Aligned_cols=16 Identities=38% Similarity=0.563 Sum_probs=12.4
Q ss_pred HHhhhhcCEEEEeCCC
Q psy14417 19 THALQNADLVLLLGAR 34 (120)
Q Consensus 19 ~~~l~~aDlil~iG~~ 34 (120)
.++++++|+||..|..
T Consensus 61 ~~~~~~~DliIttGG~ 76 (144)
T TIGR00177 61 RKAVDEADVVLTTGGT 76 (144)
T ss_pred HHHHhCCCEEEECCCC
Confidence 3456789999999954
No 215
>PRK15478 cbiH cobalt-precorrin-3B C(17)-methyltransferase; Provisional
Probab=20.67 E-value=77 Score=22.46 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=16.8
Q ss_pred CccccChHHHHhhhhcCEEEEeC
Q psy14417 10 HPNCVSAARTHALQNADLVLLLG 32 (120)
Q Consensus 10 hp~~~G~~~~~~l~~aDlil~iG 32 (120)
+|-++-..+.++|++||+|+.-.
T Consensus 11 dp~lLTlrA~~~L~~ADvVv~~~ 33 (241)
T PRK15478 11 SQAMMTMEAIEALQAAEIVVGYK 33 (241)
T ss_pred ChHHHHHHHHHHHHcCCEEEEcC
Confidence 34444456889999999999543
No 216
>PRK01678 rpmE2 50S ribosomal protein L31 type B; Reviewed
Probab=20.45 E-value=50 Score=19.84 Aligned_cols=12 Identities=17% Similarity=0.371 Sum_probs=8.7
Q ss_pred CCCCCCccccCh
Q psy14417 5 VVPDAHPNCVSA 16 (120)
Q Consensus 5 ~~~~~hp~~~G~ 16 (120)
+-+..||+|.|-
T Consensus 50 i~S~~HPFyTGk 61 (87)
T PRK01678 50 ISSASHPFYTGK 61 (87)
T ss_pred eCCCCCCcCcCC
Confidence 345689999884
No 217
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=20.35 E-value=69 Score=23.00 Aligned_cols=37 Identities=16% Similarity=0.282 Sum_probs=21.9
Q ss_pred hhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCC
Q psy14417 21 ALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLN 59 (120)
Q Consensus 21 ~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d 59 (120)
-++++|+||++|.+=+....... ....+.+++-|+..
T Consensus 22 ~~~~~Dlvi~iGGDGTlL~a~~~--~~~~~~PvlGIN~G 58 (246)
T PRK04761 22 PIEEADVIVALGGDGFMLQTLHR--YMNSGKPVYGMNRG 58 (246)
T ss_pred CcccCCEEEEECCCHHHHHHHHH--hcCCCCeEEEEeCC
Confidence 35689999999987443211111 11235678888864
No 218
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=20.27 E-value=90 Score=19.62 Aligned_cols=15 Identities=47% Similarity=0.676 Sum_probs=11.8
Q ss_pred HHhhhhcCEEEEeCC
Q psy14417 19 THALQNADLVLLLGA 33 (120)
Q Consensus 19 ~~~l~~aDlil~iG~ 33 (120)
.++++++|+||..|.
T Consensus 52 ~~~~~~~dliittGG 66 (135)
T smart00852 52 REALERADLVITTGG 66 (135)
T ss_pred HHHHhCCCEEEEcCC
Confidence 345577999999995
Done!