Query psy14417
Match_columns 120
No_of_seqs 180 out of 1013
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 19:20:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14417.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14417hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q28_A Oxalyl-COA decarboxylas 99.7 2.6E-17 8.9E-22 126.9 12.8 109 1-114 247-355 (564)
2 2c31_A Oxalyl-COA decarboxylas 99.7 2E-17 7E-22 127.7 12.2 109 1-114 249-358 (568)
3 4feg_A Pyruvate oxidase; carba 99.7 1.5E-16 5.3E-21 123.6 12.6 104 1-114 246-356 (603)
4 1ybh_A Acetolactate synthase, 99.7 1.8E-16 6.2E-21 122.9 9.5 112 1-114 248-366 (590)
5 1t9b_A Acetolactate synthase, 99.7 1.3E-16 4.4E-21 125.6 7.2 108 1-115 326-449 (677)
6 3eya_A Pyruvate dehydrogenase 99.6 4.7E-16 1.6E-20 119.7 8.8 101 1-114 235-342 (549)
7 1v5e_A Pyruvate oxidase; oxido 99.6 2.2E-15 7.7E-20 116.8 11.6 104 1-114 239-349 (590)
8 2pgn_A Cyclohexane-1,2-dione h 99.6 3.9E-15 1.3E-19 115.4 12.3 87 1-89 241-334 (589)
9 2uz1_A Benzaldehyde lyase; thi 99.6 1.3E-15 4.5E-20 117.5 9.3 109 1-114 240-357 (563)
10 2pan_A Glyoxylate carboligase; 99.6 2.2E-15 7.4E-20 117.3 7.8 112 1-114 262-381 (616)
11 2iht_A Carboxyethylarginine sy 99.6 2.8E-15 9.7E-20 115.8 5.6 87 1-89 252-351 (573)
12 1ozh_A ALS, acetolactate synth 99.6 1.8E-14 6.3E-19 111.2 10.0 105 1-115 243-356 (566)
13 1q6z_A BFD, BFDC, benzoylforma 99.6 1.9E-14 6.7E-19 110.1 10.0 87 1-89 237-330 (528)
14 3lq1_A 2-succinyl-5-enolpyruvy 99.5 2E-14 6.7E-19 111.3 6.3 106 2-114 260-372 (578)
15 3hww_A 2-succinyl-5-enolpyruvy 99.5 6.1E-15 2.1E-19 113.7 0.6 84 1-85 254-338 (556)
16 2vk8_A Pyruvate decarboxylase 99.4 4.4E-13 1.5E-17 103.4 6.5 84 1-89 247-338 (563)
17 2x7j_A 2-succinyl-5-enolpyruvy 99.4 8.4E-13 2.9E-17 102.6 6.1 103 2-112 279-390 (604)
18 1ovm_A Indole-3-pyruvate decar 99.3 1.3E-12 4.4E-17 100.5 6.5 83 1-89 245-335 (552)
19 2wvg_A PDC, pyruvate decarboxy 99.3 1.2E-12 4.2E-17 101.0 5.4 84 1-89 245-336 (568)
20 2vbi_A Pyruvate decarboxylase; 99.3 1.8E-12 6.2E-17 100.0 5.2 84 1-89 245-336 (566)
21 2vbf_A Branched-chain alpha-ke 99.3 3.1E-12 1.1E-16 98.8 5.0 84 1-89 264-355 (570)
22 2nxw_A Phenyl-3-pyruvate decar 99.2 2.5E-11 8.4E-16 93.8 5.6 84 1-89 258-349 (565)
23 3cf4_G Acetyl-COA decarboxylas 99.1 5.4E-13 1.8E-17 88.9 -4.1 83 1-89 70-168 (170)
24 1ytl_A Acetyl-COA decarboxylas 98.8 1.2E-10 4.1E-15 77.9 -4.0 57 1-57 69-142 (174)
25 3glr_A NAD-dependent deacetyla 98.5 6.5E-07 2.2E-11 64.0 9.3 72 18-89 191-264 (285)
26 1j8f_A SIRT2, sirtuin 2, isofo 98.2 2.4E-06 8.2E-11 62.0 6.4 72 18-89 214-303 (323)
27 2hjh_A NAD-dependent histone d 98.1 6.6E-06 2.2E-10 60.4 5.8 69 18-89 249-317 (354)
28 4iao_A NAD-dependent histone d 98.0 7.3E-06 2.5E-10 62.2 5.8 69 18-89 387-455 (492)
29 1q1a_A HST2 protein; ternary c 98.0 7.6E-06 2.6E-10 58.5 4.6 69 21-89 208-278 (289)
30 3pki_A NAD-dependent deacetyla 97.9 1.4E-05 4.7E-10 58.6 5.7 69 18-89 200-270 (355)
31 1q14_A HST2 protein; histone d 97.9 1.9E-05 6.4E-10 58.2 6.4 69 21-89 216-286 (361)
32 1s5p_A NAD-dependent deacetyla 97.9 1E-05 3.4E-10 56.2 3.9 70 17-89 160-231 (235)
33 3k35_A NAD-dependent deacetyla 97.9 1.4E-05 4.7E-10 57.9 4.4 69 18-89 200-270 (318)
34 3riy_A NAD-dependent deacetyla 97.8 1.5E-05 5E-10 56.6 3.5 66 18-85 206-272 (273)
35 1m2k_A Silent information regu 97.7 2.8E-05 9.7E-10 54.4 4.3 69 18-89 171-241 (249)
36 1yc5_A NAD-dependent deacetyla 97.7 1.6E-05 5.4E-10 55.6 2.9 69 18-89 174-244 (246)
37 1ma3_A SIR2-AF2, transcription 97.7 2.1E-05 7E-10 55.2 3.2 69 18-89 177-247 (253)
38 3u31_A SIR2A, transcriptional 97.3 5.5E-05 1.9E-09 54.1 1.0 69 18-89 210-280 (290)
39 3c2q_A Uncharacterized conserv 95.2 0.045 1.6E-06 39.6 5.7 68 19-89 268-339 (345)
40 1o97_D Electron transferring f 92.6 0.21 7.3E-06 35.9 5.2 64 20-89 255-319 (320)
41 1efv_A Electron transfer flavo 90.7 0.96 3.3E-05 32.5 6.9 60 24-89 253-313 (315)
42 1efp_A ETF, protein (electron 89.5 1.2 4.2E-05 31.8 6.6 59 24-88 248-307 (307)
43 2f62_A Nucleoside 2-deoxyribos 82.5 0.59 2E-05 30.3 1.8 69 19-89 62-159 (161)
44 1pno_A NAD(P) transhydrogenase 72.5 7.1 0.00024 25.6 4.6 70 18-88 92-179 (180)
45 2bru_C NAD(P) transhydrogenase 69.4 7.7 0.00026 25.5 4.3 69 18-87 99-185 (186)
46 2e7z_A Acetylene hydratase AHY 69.0 15 0.00052 28.9 6.7 44 22-65 158-205 (727)
47 2fsv_C NAD(P) transhydrogenase 67.4 8 0.00027 25.9 4.1 70 18-88 115-202 (203)
48 2vpz_A Thiosulfate reductase; 65.2 14 0.00047 29.4 5.8 44 22-65 197-244 (765)
49 1d4o_A NADP(H) transhydrogenas 64.3 8.2 0.00028 25.4 3.6 71 18-89 91-179 (184)
50 1djl_A Transhydrogenase DIII; 62.2 8.7 0.0003 25.8 3.5 71 18-89 114-202 (207)
51 2iv2_X Formate dehydrogenase H 60.5 2.3 7.9E-05 33.5 0.6 45 21-65 163-210 (715)
52 2nap_A Protein (periplasmic ni 58.2 9.9 0.00034 29.9 3.8 44 22-65 164-212 (723)
53 2ivf_A Ethylbenzene dehydrogen 50.4 2.6 9E-05 34.6 -0.6 43 22-65 244-290 (976)
54 1kqf_A FDH-N alpha, formate de 47.2 11 0.00038 31.1 2.6 43 22-65 220-267 (1015)
55 3ml1_A NAPA, periplasmic nitra 46.6 2.5 8.5E-05 34.0 -1.3 45 21-65 175-224 (802)
56 1ti6_A Pyrogallol hydroxytrans 45.6 22 0.00076 28.7 4.1 43 21-64 205-256 (875)
57 1eu1_A Dimethyl sulfoxide redu 44.7 15 0.00052 29.2 3.0 44 21-64 174-228 (780)
58 3hh1_A Tetrapyrrole methylase 44.6 18 0.00062 21.5 2.7 23 11-33 18-40 (117)
59 3ndc_A Precorrin-4 C(11)-methy 43.9 45 0.0016 22.8 5.0 44 10-57 15-58 (264)
60 1h0h_A Formate dehydrogenase ( 42.9 4.1 0.00014 33.5 -0.6 43 22-65 182-228 (977)
61 2r48_A Phosphotransferase syst 38.3 37 0.0013 20.3 3.3 34 20-60 53-86 (106)
62 3dnf_A ISPH, LYTB, 4-hydroxy-3 37.8 25 0.00085 25.0 2.9 19 18-36 203-221 (297)
63 3i9v_3 NADH-quinone oxidoreduc 37.5 6.5 0.00022 31.5 -0.2 17 49-65 444-460 (783)
64 2kyr_A Fructose-like phosphotr 36.9 38 0.0013 20.4 3.3 52 19-88 55-106 (111)
65 1q16_A Respiratory nitrate red 35.6 7.4 0.00025 33.1 -0.1 43 22-64 244-289 (1247)
66 3gi1_A LBP, laminin-binding pr 35.0 38 0.0013 23.5 3.5 22 17-38 53-74 (286)
67 3ehd_A Uncharacterized conserv 34.7 19 0.00063 23.2 1.7 45 19-65 64-112 (162)
68 2r4q_A Phosphotransferase syst 34.5 37 0.0013 20.2 2.9 34 20-60 53-86 (106)
69 3hh8_A Metal ABC transporter s 34.1 37 0.0013 23.7 3.3 21 17-37 59-79 (294)
70 3szu_A ISPH, 4-hydroxy-3-methy 33.8 28 0.00096 25.1 2.6 19 18-36 219-237 (328)
71 4fyk_A Deoxyribonucleoside 5'- 32.4 31 0.0011 21.9 2.5 38 19-58 63-102 (152)
72 3v2d_4 50S ribosomal protein L 31.5 21 0.00073 19.8 1.4 12 5-16 35-46 (71)
73 3mfq_A TROA, high-affinity zin 31.2 45 0.0015 23.1 3.4 21 17-37 48-68 (282)
74 1vs6_Z 50S ribosomal protein L 31.0 21 0.0007 19.7 1.2 12 5-16 36-47 (70)
75 2prs_A High-affinity zinc upta 30.9 41 0.0014 23.2 3.1 20 18-37 42-61 (284)
76 3ujp_A Mn transporter subunit; 30.9 47 0.0016 23.4 3.4 21 17-37 73-93 (307)
77 3cx3_A Lipoprotein; zinc-bindi 30.8 44 0.0015 23.1 3.3 20 17-36 51-70 (284)
78 2npn_A Putative cobalamin synt 30.8 40 0.0014 22.7 3.0 26 9-34 13-38 (251)
79 1pq4_A Periplasmic binding pro 30.3 45 0.0015 23.2 3.2 19 18-36 45-63 (291)
80 1nkw_Y 50S ribosomal protein L 29.5 18 0.00063 20.1 0.9 11 5-15 35-45 (73)
81 4e16_A Precorrin-4 C(11)-methy 29.1 45 0.0015 22.6 3.0 27 9-35 15-41 (253)
82 2e0n_A Precorrin-2 C20-methylt 29.0 44 0.0015 22.6 2.9 23 9-31 15-37 (259)
83 2o1e_A YCDH; alpha-beta protei 27.9 53 0.0018 23.1 3.3 20 18-37 64-83 (312)
84 1xvl_A Mn transporter, MNTC pr 27.8 54 0.0019 23.2 3.3 20 18-37 88-107 (321)
85 2qbu_A Precorrin-2 methyltrans 26.8 40 0.0014 22.2 2.4 25 9-33 13-37 (232)
86 1ve2_A Uroporphyrin-III C-meth 26.7 50 0.0017 21.9 2.9 21 10-30 14-34 (235)
87 1vhv_A Diphthine synthase; str 26.5 50 0.0017 22.5 2.9 15 16-30 30-44 (268)
88 3nut_A Precorrin-3 methylase; 26.5 50 0.0017 22.3 2.9 24 11-34 21-44 (251)
89 1va0_A Uroporphyrin-III C-meth 26.4 53 0.0018 21.9 2.9 22 9-30 11-32 (239)
90 1toa_A Tromp-1, protein (perip 26.2 60 0.0021 22.8 3.3 19 18-36 81-99 (313)
91 2z6r_A Diphthine synthase; met 24.2 59 0.002 22.0 2.9 25 9-33 11-35 (265)
92 1s4d_A Uroporphyrin-III C-meth 23.6 65 0.0022 22.2 3.0 18 13-30 29-46 (280)
93 1cbf_A Cobalt-precorrin-4 tran 23.5 64 0.0022 22.2 3.0 19 17-35 39-57 (285)
94 3kwp_A Predicted methyltransfe 23.4 64 0.0022 22.6 3.0 21 13-33 30-50 (296)
95 1wde_A Probable diphthine synt 22.0 68 0.0023 22.2 2.9 23 9-31 17-39 (294)
96 3i4t_A Diphthine synthase; nia 22.0 70 0.0024 22.4 2.9 15 16-30 38-52 (292)
97 3nd1_A Precorrin-6A synthase/C 21.9 89 0.0031 21.6 3.5 19 17-35 40-58 (275)
98 1wyz_A Putative S-adenosylmeth 20.4 72 0.0025 21.3 2.7 20 13-32 20-39 (242)
99 2bb3_A Cobalamin biosynthesis 20.2 82 0.0028 20.8 2.9 18 13-30 35-52 (221)
100 3kbq_A Protein TA0487; structu 20.2 70 0.0024 20.6 2.5 15 19-33 57-71 (172)
No 1
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=99.74 E-value=2.6e-17 Score=126.92 Aligned_cols=109 Identities=35% Similarity=0.646 Sum_probs=88.9
Q ss_pred CCCCCCCCCCccccChHHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEEecCHHHH
Q psy14417 1 MGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLT 80 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~~ 80 (120)
+|||+||++||+|+|...++++++|||||+||+++.+..+++. ..+.+++++||||.|+.+++++++.++.++||++.+
T Consensus 247 ~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~~~-~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~ 325 (564)
T 2q28_A 247 MAKGILEDTHPLSAAAARSFALANADVVMLVGARLNWLLAHGK-KGWAADTQFIQLDIEPQEIDSNRPIAVPVVGDIASS 325 (564)
T ss_dssp GGTTSSCTTCTTBCGGGHHHHHHHCSEEEEESCCCSGGGGGGT-TTSCTTCEEEEEESCGGGTTSSSCCSEEEESCHHHH
T ss_pred CccccCCCCChhhcChHHHhHhhcCCEEEEECCcccccccccc-cccCCCCeEEEEeCCHHHhcCCCCCCeEEEcCHHHH
Confidence 5899999999999999888899999999999999987544443 445567899999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCCccCCCchHHHHHHHHHhhh
Q psy14417 81 VQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 114 (120)
Q Consensus 81 l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 114 (120)
|++|++.+..+. .....+|.++++++++.+
T Consensus 326 l~~L~~~l~~~~----~~~~~~w~~~~~~~~~~~ 355 (564)
T 2q28_A 326 MQGMLAELKQNT----FTTPLVWRDILNIHKQQN 355 (564)
T ss_dssp HHHHHHHHHHSC----CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcC----cCCcHHHHHHHHHHHHhh
Confidence 999998876211 112456887777665543
No 2
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=99.74 E-value=2e-17 Score=127.66 Aligned_cols=109 Identities=33% Similarity=0.620 Sum_probs=88.8
Q ss_pred CCCCCCCCCCccccChHHHHhhhhcCEEEEeCCCCCcccccCCCCCCC-CCCeEEEEcCChhhhhhccccceEEecCHHH
Q psy14417 1 MGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWMLHFGRAPRFK-SNVKIIQVDLNAEELHNSVQAAVAIQSDVRL 79 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~-~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~ 79 (120)
+|||++|++||+|+|...+.++++|||||+||+++++..+++....+. +++++||||.|+.+++++++.++.+++|++.
T Consensus 249 ~~~g~~~~~~p~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~ 328 (568)
T 2c31_A 249 MAKGLLPDNHPQSAAATRAFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMDSNQPIAAPVVGDIKS 328 (568)
T ss_dssp GGTTSSCTTCTTBCGGGHHHHHHHCSEEEEESCCCSGGGGGGCSGGGTTSCCEEEEEESCGGGTTSSSCCSEEEESCHHH
T ss_pred cccccCCCCChhhcchHHHhhhccCCEEEEECCCCccccccCcccccCCCCCeEEEEeCCHHHhcCCcCCCceeeCCHHH
Confidence 589999999999999988889999999999999998764444444454 6789999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccCCccCCCchHHHHHHHHHhhh
Q psy14417 80 TVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 114 (120)
Q Consensus 80 ~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 114 (120)
+|++|++.+. .. .....+|.++++++++.+
T Consensus 329 ~l~~L~~~l~--~~---~~~~~~w~~~~~~~~~~~ 358 (568)
T 2c31_A 329 AVSLLRKALK--GA---PKADAEWTGALKAKVDGN 358 (568)
T ss_dssp HHHHHHHHHT--TC---CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhh--hc---CCCcHHHHHHHHHHHHhh
Confidence 9999998876 21 122456887776655543
No 3
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=99.70 E-value=1.5e-16 Score=123.62 Aligned_cols=104 Identities=24% Similarity=0.472 Sum_probs=82.6
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|||+||++||+|+|. .+++++++|||||+||+++++. .....+.+++++||||+|+.++++++++++.+
T Consensus 246 ~gkg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~---~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i 322 (603)
T 4feg_A 246 PAKGIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYPFA---EVSKAFKNTRYFLQIDIDPAKLGKRHKTDIAV 322 (603)
T ss_dssp GGTTSSCTTCTTBCCCCSSSSCHHHHHHHHHCSEEEEESCCCTTT---TTTTTTTTCSEEEEEESCGGGTTSSSCCSEEE
T ss_pred ccccCCCCCChhhcccCcccCcHHHHHHHHhCCEEEEECCCCCcc---cccccCCCCCeEEEEeCCHHHhCCccCCCEEE
Confidence 5899999999999985 3578899999999999998742 11233556789999999999999999999999
Q ss_pred ecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhhh
Q psy14417 74 QSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 114 (120)
Q Consensus 74 ~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 114 (120)
+||++.+|++|++.+. . .....|.+.+.+.++.|
T Consensus 323 ~~D~~~~l~~L~~~l~--~-----~~~~~~~~~~~~~~~~~ 356 (603)
T 4feg_A 323 LADAQKTLAAILAQVS--E-----RESTPWWQANLANVKNW 356 (603)
T ss_dssp ESCHHHHHHHHHHTCC--C-----CCCCHHHHHHHHHHHHH
T ss_pred EeCHHHHHHHHHHhhh--c-----cCChHHHHHHHHHHHHH
Confidence 9999999999998875 2 12345766655444433
No 4
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=99.67 E-value=1.8e-16 Score=122.88 Aligned_cols=112 Identities=24% Similarity=0.405 Sum_probs=88.4
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|||+||++||+|+|. .++.++++|||||+||+++++. .++.+..+.++.++||||.|+.++++++.+++.+
T Consensus 248 ~g~g~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~-~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i 326 (590)
T 1ybh_A 248 MGLGSYPADDELSLHMLGMHGTVYANYAVEHSDLLLAFGVRFDDR-VTGKLEAFASRAKIVHIDIDSAEIGKNKTPHVSV 326 (590)
T ss_dssp TTTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSEEEEESCCCCHH-HHSSGGGTTTTSEEEEEESCTTTTTSSSCCSEEE
T ss_pred hhcCcCCCCCchhcCCcccccCHHHHHHHHhCCEEEEEcCCCCcc-ccCcccccCCCCeEEEEECCHHHhCCCcCCCeEE
Confidence 5899999999999885 4578899999999999999876 4555555666789999999999999999999999
Q ss_pred ecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhhh
Q psy14417 74 QSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 114 (120)
Q Consensus 74 ~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 114 (120)
+||++.+|++|++.+...... .......|.+.+.++++.+
T Consensus 327 ~~d~~~~l~~L~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~ 366 (590)
T 1ybh_A 327 CGDVKLALQGMNKVLENRAEE-LKLDFGVWRNELNVQKQKF 366 (590)
T ss_dssp ESCHHHHHHHHHHHHHHTHHH-HCCCCHHHHHHHHHHHHHS
T ss_pred ecCHHHHHHHHHHhhhccccc-cccchHHHHHHHHHHHHhh
Confidence 999999999999877521100 0012356888777766543
No 5
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=99.66 E-value=1.3e-16 Score=125.62 Aligned_cols=108 Identities=20% Similarity=0.412 Sum_probs=87.2
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCe---------EEEEcCChhhhh
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVK---------IIQVDLNAEELH 64 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~---------vi~Id~d~~~i~ 64 (120)
+|||+||++||+|+|+ .++.++++|||||+||+++++. .++.+..+.++++ +||||+|+.+++
T Consensus 326 ~gkg~~~~~hpl~lG~~G~~g~~~~~~~l~~aDlvl~iG~r~~~~-~t~~~~~~~~~~~~~~~~~~~~iI~idid~~~~~ 404 (677)
T 1t9b_A 326 QGLGSFDQEDPKSLDMLGMHGCATANLAVQNADLIIAVGARFDDR-VTGNISKFAPEARRAAAEGRGGIIHFEVSPKNIN 404 (677)
T ss_dssp GGTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSEEEEESCCCCTT-TSCSGGGSSHHHHHHHHTTSCEEEEEESCGGGSS
T ss_pred ccCccCCCCCccccCcCCccCcHHHHHHHhcCCEEEEECCccCcc-cccCccccCcccccccccCCceEEEEECCHHHhC
Confidence 5899999999998774 4577899999999999999876 4554545544556 999999999999
Q ss_pred hccccceEEecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhhhh
Q psy14417 65 NSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNR 115 (120)
Q Consensus 65 ~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~ 115 (120)
+++..++.+.||++.+|+.|++.+. . ......|.+++.++++.++
T Consensus 405 ~~~~~~~~i~gD~~~~l~~L~~~l~--~----~~~~~~w~~~~~~~~~~~~ 449 (677)
T 1t9b_A 405 KVVQTQIAVEGDATTNLGKMMSKIF--P----VKERSEWFAQINKWKKEYP 449 (677)
T ss_dssp SSSCCSEEEESCHHHHHHHHHTTSC--C----CCCCHHHHHHHHHHHHHSC
T ss_pred CcccCCEEEeCCHHHHHHHHHHHhh--c----cccchHHHHHHHHHHHhcc
Confidence 9999999999999999999987775 2 0224568888887776653
No 6
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=99.64 E-value=4.7e-16 Score=119.67 Aligned_cols=101 Identities=23% Similarity=0.383 Sum_probs=81.0
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|||+||++||+|+|. .+++++++|||||+||+++++.. .+++++++||||.|+.+++++++.++.+
T Consensus 235 ~gkg~~~~~hp~~~G~~G~~~~~~~~~~~~~aDlvl~iG~~~~~~~------~~~~~~~~i~id~d~~~~~~~~~~~~~i 308 (549)
T 3eya_A 235 RGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFPYRA------FYPTDAKIIQIDINPASIGAHSKVDMAL 308 (549)
T ss_dssp GGHHHHSSSCTTBCCCCSTTSCHHHHHHHHHCSEEEEESCCCCCGG------GSCSSSEEEEEESCGGGTTSSSCCSEEE
T ss_pred ccCcCCCCCCcccccCCCCCCCHHHHHHHHhCCEEEEECCCCCccc------cCCCCCeEEEEeCCHHHhCCCCCCCeEE
Confidence 5789999999999985 46788999999999999987531 1345789999999999999999999999
Q ss_pred ecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhhh
Q psy14417 74 QSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 114 (120)
Q Consensus 74 ~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 114 (120)
+||++.+|+.|++.+. . ....+|.+.+.+.++++
T Consensus 309 ~~d~~~~l~~L~~~l~--~-----~~~~~~~~~~~~~~~~~ 342 (549)
T 3eya_A 309 VGDIKSTLRALLPLVE--E-----KADRKFLDKALEDYRDA 342 (549)
T ss_dssp ECCHHHHHHHHGGGSC--C-----CCCCHHHHHHHHHHHHH
T ss_pred EeCHHHHHHHHHHhcc--c-----cCcHHHHHHHHHHHHHH
Confidence 9999999999987775 2 22345776665554443
No 7
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=99.63 E-value=2.2e-15 Score=116.84 Aligned_cols=104 Identities=18% Similarity=0.236 Sum_probs=84.0
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|||.||++||+|+|. .+++++++||+||++|+++++...++.+ | ++.++||||.|+.++++++.+++.+
T Consensus 239 ~g~g~~~~~~p~~~G~~g~~g~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~--~-~~~~~i~id~d~~~~~~~~~~~~~i 315 (590)
T 1v5e_A 239 KNFETFEWDFEALTGSTYRVGWKPANETILEADTVLFAGSNFPFSEVEGTF--R-NVDNFIQIDIDPAMLGKRHHADVAI 315 (590)
T ss_dssp TCGGGSCTTCTTEEEESSSSSCHHHHHHHHHCSEEEEESCCCTTTTTTTTT--T-TCSEEEEEESCGGGTTSSSCCSEEE
T ss_pred ccCcCCCCCChhhCccCcccCCHHHHHHHHhCCEEEEECCCCcchhccccC--C-CCCeEEEEeCCHHHHCCCcCCCeEE
Confidence 5899999999999985 4678899999999999999875322212 3 5789999999999999999999999
Q ss_pred ecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhhh
Q psy14417 74 QSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 114 (120)
Q Consensus 74 ~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 114 (120)
+||++.+|+.|++.+. . .....|.+.+.++++++
T Consensus 316 ~gd~~~~l~~L~~~l~--~-----~~~~~w~~~~~~~~~~~ 349 (590)
T 1v5e_A 316 LGDAALAIDEILNKVD--A-----VEESAWWTANLKNIANW 349 (590)
T ss_dssp ESCHHHHHHHHHHHSC--C-----CCCCHHHHHHHHHHHHH
T ss_pred EcCHHHHHHHHHHhhc--c-----CCcHHHHHHHHHHHHHh
Confidence 9999999999998775 2 12356877776665544
No 8
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=99.63 E-value=3.9e-15 Score=115.44 Aligned_cols=87 Identities=24% Similarity=0.386 Sum_probs=76.3
Q ss_pred CCCCCCCCCCccccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 1 MGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|||.||++||+|+|. .+++++++|||||+||+++.+. .++ +..+.+++++||||.|+.++++++.+++.+
T Consensus 241 ~~~g~~~~~~p~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~-~~~-~~~~~~~~~~i~id~d~~~~~~~~~~~~~i 318 (589)
T 2pgn_A 241 TGAGVFPETHALAMGSAGFCGWKSANDMMAAADFVLVLGSRLSDW-GIA-QGYITKMPKFVHVDTDPAVLGTFYFPLLSV 318 (589)
T ss_dssp TTTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSEEEEESCCCCTT-TTT-TTTTCCCCSEEEEESCGGGTTSSSCCSEEE
T ss_pred ccCccCCCCChhhcCCccccCCHHHHHHHhhCCEEEEECCCcccc-ccc-ccccCCCCeEEEEeCCHHHHCCCcCCCEEE
Confidence 6899999999999984 3578899999999999999876 344 555556789999999999999999999999
Q ss_pred ecCHHHHHHHHHHHhh
Q psy14417 74 QSDVRLTVQQLKQMLS 89 (120)
Q Consensus 74 ~~d~~~~l~~L~~~l~ 89 (120)
+||++.+|+.|++.+.
T Consensus 319 ~~d~~~~l~~L~~~l~ 334 (589)
T 2pgn_A 319 VADAKTFMEQLIEVLP 334 (589)
T ss_dssp ECCHHHHHHHHHHHGG
T ss_pred EeCHHHHHHHHHHHhh
Confidence 9999999999998775
No 9
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=99.62 E-value=1.3e-15 Score=117.46 Aligned_cols=109 Identities=23% Similarity=0.253 Sum_probs=84.6
Q ss_pred CCCCCCCCC-CccccChH------HHHhhhhcCEEEEeCCCCCcccccCCCCCCCC-CCeEEEEcCChhhhhhccccceE
Q psy14417 1 MGKGVVPDA-HPNCVSAA------RTHALQNADLVLLLGARLNWMLHFGRAPRFKS-NVKIIQVDLNAEELHNSVQAAVA 72 (120)
Q Consensus 1 ~~kg~~~~~-hp~~~G~~------~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~-~~~vi~Id~d~~~i~~~~~~~~~ 72 (120)
+|||.||++ ||+|+|.+ +++ +++||+||+||+++.+. .++.+..+.+ +.++||||.|+.+++++++.++.
T Consensus 240 ~~~g~~~~~~~p~~~G~~g~~~~~~~~-~~~aDlvl~iG~~~~~~-~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~ 317 (563)
T 2uz1_A 240 EGLSMLSGLPDAMRGGLVQNLYSFAKA-DAAPDLVLMLGARFGLN-TGHGSGQLIPHSAQVIQVDPDACELGRLQGIALG 317 (563)
T ss_dssp GGGGGGTTSCGGGEEEEGGGGGGTTTT-TCCCSEEEEESCCSSGG-GTTTSCSSSCTTSEEEEECSCGGGTTSSSCCSEE
T ss_pred cccCcCCCCCChhhcCCCCCCCHHHHh-hcCCCEEEEECCCCccc-ccccccccCCCCCeEEEEECCHHHhCCCCCCCeE
Confidence 589999999 99999864 245 88999999999999887 4554555555 78999999999999999999999
Q ss_pred EecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHH-HHhhh
Q psy14417 73 IQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKL-KCQTN 114 (120)
Q Consensus 73 i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~-~~~~~ 114 (120)
++||++.+|+.|++.+. ... .......|.+++.+ +++.+
T Consensus 318 i~~d~~~~l~~L~~~l~--~~~-~~~~~~~~~~~~~~~~~~~~ 357 (563)
T 2uz1_A 318 IVADVGGTIEALAQATA--QDA-AWPDRGDWCAKVTDLAQERY 357 (563)
T ss_dssp ECSCHHHHHHHHHHHHT--TSC-CCCCCHHHHHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHHhhh--hcc-cccCcHHHHHHHHHHHHHHh
Confidence 99999999999998775 210 00123457766666 55444
No 10
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=99.59 E-value=2.2e-15 Score=117.35 Aligned_cols=112 Identities=20% Similarity=0.328 Sum_probs=86.2
Q ss_pred CCCCCCCCCCccccCh--------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceE
Q psy14417 1 MGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVA 72 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~--------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~ 72 (120)
+|||.||++||+|+|. .+++++++||+||+||+++.+. .++.+..+.++.++||||.|+.++++++++++.
T Consensus 262 ~~~g~~~~~hp~~~G~~g~~~~~~~~~~~l~~aDlvl~iG~~~~~~-~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~ 340 (616)
T 2pan_A 262 MGWGCIPDDHELMAGMVGLQTAHRYGNATLLASDMVFGIGNRFANR-HTGSVEKYTEGRKIVHIDIEPTQIGRVLCPDLG 340 (616)
T ss_dssp TTTTSSCTTSTTBCCCCSSSSCCHHHHHHHHHCSEEEEESCCCCHH-HHSSHHHHHTTCEEEEEESCGGGTTSSSCCSSC
T ss_pred ccCccCCCCCccccCCccccCCHHHHHHHHHhCCEEEEECCCCccc-ccCcccccCCCCeEEEEeCCHHHhCCCCCCCeE
Confidence 5899999999999985 4567899999999999999875 344443444678999999999999999999999
Q ss_pred EecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhhh
Q psy14417 73 IQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 114 (120)
Q Consensus 73 i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 114 (120)
++||++.+|++|++.+...... ......+|.+.+.++++.+
T Consensus 341 i~~D~~~~l~~L~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~ 381 (616)
T 2pan_A 341 IVSDAKAALTLLVEVAQEMQKA-GRLPCRKEWVADCQQRKRT 381 (616)
T ss_dssp EECCHHHHHHHHHHHHHHHHHT-TCSCCCHHHHHHHHHHHTT
T ss_pred EEcCHHHHHHHHHHHhhhcccc-cccccHHHHHHHHHHHHhh
Confidence 9999999999998876421000 0122456877776665543
No 11
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=99.56 E-value=2.8e-15 Score=115.85 Aligned_cols=87 Identities=18% Similarity=0.223 Sum_probs=72.8
Q ss_pred CCCCCCCCCCccccChH------------HHHhhhhcCEEEEeCCC-CCcccccCCCCCCCCCCeEEEEcCChhhhhhcc
Q psy14417 1 MGKGVVPDAHPNCVSAA------------RTHALQNADLVLLLGAR-LNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSV 67 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~~------------~~~~l~~aDlil~iG~~-~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~ 67 (120)
+|||+||++||+|+|.+ +++++++||+||+||++ +.+.. ++.+.. .+++++||||.|+.++++++
T Consensus 252 ~~~g~~~~~hp~~~G~~~~~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~-~~~~~~-~~~~~~i~id~d~~~~~~~~ 329 (573)
T 2iht_A 252 IAKGVLPVGHELNYGAVTGYMDGILNFPALQTMFAPVDLVLTVGYDYAEDLR-PSMWQK-GIEKKTVRISPTVNPIPRVY 329 (573)
T ss_dssp TTTTSSCTTCTTEEEECCTTHHHHHTSCHHHHHHTTCCEEEEETCCGGGCCC-HHHHCC-SSCCEEEEEESSCCSCTTTC
T ss_pred ccCccCCCCCcCccCccccccCCCCCCHHHHHHHhhCCEEEEECCCcccccc-ccccCC-CCCCeEEEEeCCHHHhCCCc
Confidence 58999999999998753 45788999999999999 86653 332321 15679999999999999999
Q ss_pred ccceEEecCHHHHHHHHHHHhh
Q psy14417 68 QAAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 68 ~~~~~i~~d~~~~l~~L~~~l~ 89 (120)
.+++.++||++.+|+.|++.+.
T Consensus 330 ~~~~~i~~d~~~~l~~L~~~l~ 351 (573)
T 2iht_A 330 RPDVDVVTDVLAFVEHFETATA 351 (573)
T ss_dssp CCSEEEESCHHHHHHHHHHHTT
T ss_pred CCCeeEeCCHHHHHHHHHHhcc
Confidence 9999999999999999998775
No 12
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=99.56 E-value=1.8e-14 Score=111.23 Aligned_cols=105 Identities=22% Similarity=0.244 Sum_probs=81.4
Q ss_pred CCCCCCCCCCc-cccCh-------HHHHhhhhcCEEEEeCCCCCcccccCCCCCC-CCCCeEEEEcCChhhhhhccccce
Q psy14417 1 MGKGVVPDAHP-NCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRF-KSNVKIIQVDLNAEELHNSVQAAV 71 (120)
Q Consensus 1 ~~kg~~~~~hp-~~~G~-------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~-~~~~~vi~Id~d~~~i~~~~~~~~ 71 (120)
+|||.+|++|| +|+|. .+++++++||+||+||+.+... .+..| .+++++||||.|+.++++++++++
T Consensus 243 ~~kg~~~~~~p~~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~~~~----~~~~~~~~~~~~i~id~d~~~~~~~~~~~~ 318 (566)
T 1ozh_A 243 QAAGAVNQDNFSRFAGRVGLFNNQAGDRLLQLADLVICIGYSPVEY----EPAMWNSGNATLVHIDVLPAYEERNYTPDV 318 (566)
T ss_dssp GGTTTCCTTTCTTEEEECSSBTTCHHHHHHHHCSEEEEESCCGGGS----CGGGTCCSCSEEEEEESSCCCCBTTBCCSE
T ss_pred ccCCcCCCCChHhhcCCCcccCCHHHHHHHHhCCEEEEECCCCCcC----CccccCCCCCcEEEEeCCHHHhCCCCCCCE
Confidence 58999999999 99875 3578899999999999954322 12222 236899999999999999999999
Q ss_pred EEecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhhhh
Q psy14417 72 AIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNR 115 (120)
Q Consensus 72 ~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~ 115 (120)
.+.||++.+|++|++.+. .. .....|.+++.++++.++
T Consensus 319 ~i~~d~~~~l~~L~~~l~--~~----~~~~~w~~~~~~~~~~~~ 356 (566)
T 1ozh_A 319 ELVGDIAGTLNKLAQNID--HR----LVLSPQAAEILRDRQHQR 356 (566)
T ss_dssp EEESCHHHHHHHHHHTCC--SC----CCCCHHHHHHHHHHHHHH
T ss_pred EEEeCHHHHHHHHHHhcc--cc----CCcHHHHHHHHHHHHHhH
Confidence 999999999999988775 21 123468877776665543
No 13
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=99.55 E-value=1.9e-14 Score=110.15 Aligned_cols=87 Identities=21% Similarity=0.260 Sum_probs=74.7
Q ss_pred CCCCCCCCCCccccCh------HHHHhhhhcCEEEEeCCCCCcccccCCCC-CCCCCCeEEEEcCChhhhhhccccceEE
Q psy14417 1 MGKGVVPDAHPNCVSA------ARTHALQNADLVLLLGARLNWMLHFGRAP-RFKSNVKIIQVDLNAEELHNSVQAAVAI 73 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~------~~~~~l~~aDlil~iG~~~~~~~~~~~~~-~~~~~~~vi~Id~d~~~i~~~~~~~~~i 73 (120)
+|||+||++||+|+|. .+++++++||+||+||+++.+.. ++.+. .+++++++||||.|+.+++++ ++++.+
T Consensus 237 ~g~g~~~~~~p~~~G~~g~~~~~~~~~l~~aDlvl~iG~~~~~~~-~~~~~~~~~~~~~~i~id~d~~~~~~~-~~~~~i 314 (528)
T 1q6z_A 237 APRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYH-QYDPGQYLKPGTRLISVTCDPLEAARA-PMGDAI 314 (528)
T ss_dssp CSBCCSCTTSTTEEEECCSCHHHHHHHHTTCSEEEEESSCTTCCC-SCCCSCSSCTTCEEEEEESCHHHHHHC-SSSEEE
T ss_pred CccccCCCCCccccCcCCCCcHHHHHHHhcCCEEEEECCCCcccc-ccCcCCcCCCCCeEEEEeCCHHHhCCC-CCCeeE
Confidence 5899999999999986 35688999999999999998874 44343 244578999999999999998 899999
Q ss_pred ecCHHHHHHHHHHHhh
Q psy14417 74 QSDVRLTVQQLKQMLS 89 (120)
Q Consensus 74 ~~d~~~~l~~L~~~l~ 89 (120)
++|++.+|+.|.+.+.
T Consensus 315 ~~d~~~~l~~L~~~~~ 330 (528)
T 1q6z_A 315 VADIGAMASALANLVE 330 (528)
T ss_dssp ESCHHHHHHHHHHHSC
T ss_pred eCCHHHHHHHHHHHhh
Confidence 9999999999998774
No 14
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=99.50 E-value=2e-14 Score=111.30 Aligned_cols=106 Identities=11% Similarity=0.068 Sum_probs=79.7
Q ss_pred CCCCCCCCCccccChH-------HHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEEe
Q psy14417 2 GKGVVPDAHPNCVSAA-------RTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQ 74 (120)
Q Consensus 2 ~kg~~~~~hp~~~G~~-------~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~ 74 (120)
+++.+|++||+|+|.+ ....+.+|||||.+|+++.+... ..+....++.++||||+|+.++++++.+++.++
T Consensus 260 ~~~~~~~~hp~~~g~~~~~~~~~~~~~~~~aDlvl~~G~~~~~~~~-~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~ 338 (578)
T 3lq1_A 260 GLRSYGALDEVVIDQYDAFLKEAEIIDKLTPEVVIRFGSMPVSKPL-KNWLEQLSDIRFYVVDPGAAWKDPIKAVTDMIH 338 (578)
T ss_dssp STTSBSSCCSSEECCHHHHTTSHHHHHHTCCSEEEEESSCCSCHHH-HHHHHHCCSSEEEEECTTCCCCCTTCCCSEEEC
T ss_pred CCCCCCCCCccccccHHHHhcCccccccCCCCEEEEeCCcccchhH-HHHHhcCCCCEEEEECCCCCcCCCCcCceEEEE
Confidence 6899999999999964 23457899999999998755321 112111256899999999999999999999999
Q ss_pred cCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHhhh
Q psy14417 75 SDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 114 (120)
Q Consensus 75 ~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 114 (120)
||++.+|+.|++.+. .. ....+|.+.+.++++.+
T Consensus 339 ~d~~~~l~~L~~~l~--~~----~~~~~w~~~~~~~~~~~ 372 (578)
T 3lq1_A 339 CDERFLLDIMQQNMP--DD----AKDAAWLNGWTSYNKVA 372 (578)
T ss_dssp SCHHHHHHHHHHHSC--ST----TCCHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHhhcc--CC----CCcHHHHHHHHHHHHHH
Confidence 999999999998775 21 11456877766655443
No 15
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=99.46 E-value=6.1e-15 Score=113.69 Aligned_cols=84 Identities=14% Similarity=0.058 Sum_probs=69.4
Q ss_pred CCCCCCCCCCccccCh-HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEEecCHHH
Q psy14417 1 MGKGVVPDAHPNCVSA-ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRL 79 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~-~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~ 79 (120)
+|||.++++||+|+|. .+++++++|||||+||+++++..+.++...+. ..++||||.|+.++++++.+++.++||++.
T Consensus 254 ~~~~~~~~~~~~~lg~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~-~~~~i~id~d~~~~~~~~~~~~~i~~d~~~ 332 (556)
T 3hww_A 254 SQTGQPLPCADLWLGNAKATSELQQAQIVVQLGSSLTGKRLLQWQASCE-PEEYWIVDDIEGRLDPAHHRGRRLIANIAD 332 (556)
T ss_dssp TCSCCSSCCHHHHTTSHHHHHHHTTCSEEEEESBCCCCHHHHHHHHHCC-CSEEEEEESSCSCCCTTCCSEEEEESCHHH
T ss_pred CCCCCCcCcHHHHhcCchhhhcccCCCEEEEcCCCcccHHHHHHHhcCC-CCeEEEECCCCccCCCCCCceEEEEcCHHH
Confidence 3789999999999995 57889999999999999997653332222233 348999999999999999999999999999
Q ss_pred HHHHHH
Q psy14417 80 TVQQLK 85 (120)
Q Consensus 80 ~l~~L~ 85 (120)
+|+.|.
T Consensus 333 ~l~~l~ 338 (556)
T 3hww_A 333 WLELHP 338 (556)
T ss_dssp HHHHSC
T ss_pred HHHhcc
Confidence 998863
No 16
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=99.39 E-value=4.4e-13 Score=103.36 Aligned_cols=84 Identities=24% Similarity=0.374 Sum_probs=68.3
Q ss_pred CCCCCCCCCCccccCh--------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceE
Q psy14417 1 MGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVA 72 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~--------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~ 72 (120)
+|||.||++||+|+|. .+++++++|||||+||+++++.. ++.+..+.+++++||||.|+.++++++..++.
T Consensus 247 ~g~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~-~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~ 325 (563)
T 2vk8_A 247 MGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFN-TGSFSYSYKTKNIVEFHSDHMKIRNATFPGVQ 325 (563)
T ss_dssp TTTTSSCTTSTTEEEECCGGGSCHHHHHHHHTCSEEEEESCCCCTTT-TTTTCCCCCCSCEEEECSSEEEETTEEEETCC
T ss_pred ccCccCCCCCCcccccccCccCCHHHHHHHHhCCEEEEECCCCcccc-ccccccCCCCCeEEEEeCCceEECCcccCCcC
Confidence 6899999999999875 35788999999999999998873 44444444578999999999999987766664
Q ss_pred EecCHHHHHHHHHHHhh
Q psy14417 73 IQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 73 i~~d~~~~l~~L~~~l~ 89 (120)
++.+|++|++.+.
T Consensus 326 ----~~~~l~~L~~~l~ 338 (563)
T 2vk8_A 326 ----MKFVLQKLLTTIA 338 (563)
T ss_dssp ----HHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhhc
Confidence 5899999987664
No 17
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=99.35 E-value=8.4e-13 Score=102.64 Aligned_cols=103 Identities=12% Similarity=0.100 Sum_probs=73.1
Q ss_pred CCCCC-CCCCccccChH--------HHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceE
Q psy14417 2 GKGVV-PDAHPNCVSAA--------RTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVA 72 (120)
Q Consensus 2 ~kg~~-~~~hp~~~G~~--------~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~ 72 (120)
+++.+ |++||+|+|.+ ..++++ +||||+||+++.+.. +..+....++.++||||.|+.++++++.+++.
T Consensus 279 ~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~-~Dlvl~iG~~~~~~~-~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~ 356 (604)
T 2x7j_A 279 SNLRNGVHDKSTVIDAYDSFLKDDELKRKLR-PDVVIRFGPMPVSKP-VFLWLKDDPTIQQIVIDEDGGWRDPTQASAHM 356 (604)
T ss_dssp GTTTBSSSCCTTEECCHHHHTTSHHHHHHHC-CSEEEEESSCCSCHH-HHHHHHHCTTSEEEEECTTCCCCCTTSCCSEE
T ss_pred ccccccCCCCcceechHHHHhcCchhhhhcC-CCEEEEECCcCccHH-HHHHHhhCCCCeEEEECCCCCccCCCccceEE
Confidence 45544 88899998853 234555 899999999987652 21121111257999999999999999999999
Q ss_pred EecCHHHHHHHHHHHhhhcccCCccCCCchHHHHHHHHHh
Q psy14417 73 IQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQ 112 (120)
Q Consensus 73 i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~ 112 (120)
++||++.+|+.|++.+. .. .....|.+++.++++
T Consensus 357 i~~d~~~~l~~L~~~l~--~~----~~~~~w~~~~~~~~~ 390 (604)
T 2x7j_A 357 IHCNASVFAEEIMAGLT--AA----TRSSEWLEKWQFVNG 390 (604)
T ss_dssp ECSCHHHHHHHHHHTSC--SS----CCCCHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHHhhc--CC----CCcHHHHHHHHHHHH
Confidence 99999999999988763 10 123457765554433
No 18
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=99.34 E-value=1.3e-12 Score=100.48 Aligned_cols=83 Identities=20% Similarity=0.294 Sum_probs=67.9
Q ss_pred CCCCCCCCCCccccCh--------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceE
Q psy14417 1 MGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVA 72 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~--------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~ 72 (120)
+|||.||++||+|+|. .+++++++||+||+||+++++. .++.+..+.++.++||||+|+.++++.+.+++
T Consensus 245 ~~~g~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~iG~~~~~~-~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~- 322 (552)
T 1ovm_A 245 MGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTDT-LTAGFTHQLTPAQTIEVQPHAARVGDVWFTGI- 322 (552)
T ss_dssp GGTTSSCTTSTTCCCCCCGGGSCHHHHHHHHTSSEEEEESCCCCTT-TTTTTCCCCCTTTEEEECSSEEEETTEEEESC-
T ss_pred ccCccCCCCCcCeecccCCCCCCHHHHHHHHhCCEEEEECCCCCcc-cccccccCCCCCeEEEEeCChheeCCcccCCc-
Confidence 5899999999999985 3578899999999999999887 34445444457899999999999998776655
Q ss_pred EecCHHHHHHHHHHHhh
Q psy14417 73 IQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 73 i~~d~~~~l~~L~~~l~ 89 (120)
+++.+|+.|++ +.
T Consensus 323 ---~~~~~l~~L~~-l~ 335 (552)
T 1ovm_A 323 ---PMNQAIETLVE-LC 335 (552)
T ss_dssp ---CHHHHHHHHHH-HH
T ss_pred ---cHHHHHHHHHh-Cc
Confidence 45899999988 64
No 19
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=99.32 E-value=1.2e-12 Score=101.02 Aligned_cols=84 Identities=15% Similarity=0.220 Sum_probs=67.7
Q ss_pred CCCCCCCCCCccccCh--------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceE
Q psy14417 1 MGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVA 72 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~--------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~ 72 (120)
+|||+||++||+|+|. .+++++++||+||+||+++.+. .++.+..+.++.++||||.|+.++++++..++
T Consensus 245 ~~kg~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~-~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~- 322 (568)
T 2wvg_A 245 AAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDY-STTGWTDIPDPKKLVLAEPRSVVVNGIRFPSV- 322 (568)
T ss_dssp GGTTSSCTTSTTEEEEECGGGSCTTHHHHHHHCSEEEEESCCCBTT-TTTTTTCCCCTTTEEEECSSEEEETTEEEESC-
T ss_pred hcCccCCCCCCceeccccCCcCCHHHHHHHHhCCEEEEECCCcccc-cccccccCCCCCcEEEEeCChhhcCCeecCCC-
Confidence 5899999999999885 2567899999999999999876 34444444467899999999999987666555
Q ss_pred EecCHHHHHHHHHHHhh
Q psy14417 73 IQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 73 i~~d~~~~l~~L~~~l~ 89 (120)
+++.+|+.|++.+.
T Consensus 323 ---~~~~~l~~L~~~l~ 336 (568)
T 2wvg_A 323 ---HLKDYLTRLAQKVS 336 (568)
T ss_dssp ---CHHHHHHHHHHHCC
T ss_pred ---CHHHHHHHHHHhcc
Confidence 46999999987764
No 20
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=99.30 E-value=1.8e-12 Score=100.02 Aligned_cols=84 Identities=13% Similarity=0.174 Sum_probs=68.0
Q ss_pred CCCCCCCCCCccccCh--------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceE
Q psy14417 1 MGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVA 72 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~--------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~ 72 (120)
+|||.||++||+|+|. .+++++++||+||+||+++.+.. ++.+..+.++.++||||.|+.++++++..++.
T Consensus 245 ~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~-~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~ 323 (566)
T 2vbi_A 245 AAKGFFPEDHAGFRGLYWGEVSNPGVQELVETSDALLCIAPVFNDYS-TVGWSAWPKGPNVILAEPDRVTVDGRAYDGFT 323 (566)
T ss_dssp GGTTSSCTTSTTEEEEECGGGSCTTHHHHHHTCSEEEEESCCCBTTT-TTTTTSCCCSTTEEEECSSEEEETTEEEESSC
T ss_pred ccCccCCCCCccccccccCccCCHHHHHHHHhCCEEEEECCCccccc-cccccccCCCCcEEEEeCChheeCCcccCCcc
Confidence 5899999999999885 35678999999999999998873 44444444678999999999999887666654
Q ss_pred EecCHHHHHHHHHHHhh
Q psy14417 73 IQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 73 i~~d~~~~l~~L~~~l~ 89 (120)
++.+|+.|++.+.
T Consensus 324 ----~~~~l~~L~~~l~ 336 (566)
T 2vbi_A 324 ----LRAFLQALAEKAP 336 (566)
T ss_dssp ----HHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHhcc
Confidence 6899999987664
No 21
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=99.27 E-value=3.1e-12 Score=98.76 Aligned_cols=84 Identities=23% Similarity=0.390 Sum_probs=67.4
Q ss_pred CCCCCCCCCCccccCh--------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceE
Q psy14417 1 MGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVA 72 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~--------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~ 72 (120)
+|||.||++||+|+|. .+++++++||+||+||+++.+.. ++.+..+.++.++||||.|+.++++++..++
T Consensus 264 ~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~-~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~- 341 (570)
T 2vbf_A 264 FGKSAVDESLPSFLGIYNGKLSEISLKNFVESADFILMLGVKLTDSS-TGAFTHHLDENKMISLNIDEGIIFNKVVEDF- 341 (570)
T ss_dssp TTTTSSCTTSTTEEEECCGGGSCHHHHHHHHHCSEEEEESCCCCGGG-TTTTCCCCCGGGEEEECSSCEEETTEEECSS-
T ss_pred ccCccCCCCCcCccCCcCCCcCCHHHHHHHHhCCEEEEECCCccccc-ccccccCCCCCeEEEEeCCHHHhCCeeecCC-
Confidence 5899999999999875 35678999999999999998863 4444444456799999999999998776655
Q ss_pred EecCHHHHHHHHHHHhh
Q psy14417 73 IQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 73 i~~d~~~~l~~L~~~l~ 89 (120)
|++.+|+.|++.+.
T Consensus 342 ---~~~~~l~~L~~~l~ 355 (570)
T 2vbf_A 342 ---DFRAVVSSLSELKG 355 (570)
T ss_dssp ---CHHHHHHTGGGCCS
T ss_pred ---CHHHHHHHHHHhcc
Confidence 67899988876553
No 22
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=99.17 E-value=2.5e-11 Score=93.76 Aligned_cols=84 Identities=26% Similarity=0.264 Sum_probs=65.1
Q ss_pred CCCCCCCCCCccccCh--------HHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceE
Q psy14417 1 MGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVA 72 (120)
Q Consensus 1 ~~kg~~~~~hp~~~G~--------~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~ 72 (120)
+|||.+|++||+|+|. .+++++++||+||+||+++.+. .++.+....+..++|+||.|+.++++++..++.
T Consensus 258 ~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~-~~~~~~~~~~~~~~i~i~~d~~~~~~~~~~~~~ 336 (565)
T 2nxw_A 258 MGRGLLADAPTPPLGTYIGVAGDAEITRLVEESDGLFLLGAILSDT-NFAVSQRKIDLRKTIHAFDRAVTLGYHTYADIP 336 (565)
T ss_dssp GGTTTTTTSSSCCSCBCCGGGSCHHHHHHHHTCSEEEEESCCBCSS-TTSBCTTTSCGGGEEEEETTEEEETTEEEESCC
T ss_pred ccCccCCCCCCccccccCcccCCHHHHHHHHhCCEEEEECCCcccc-ccccccccCCCCcEEEEeCCceeeCCcccCCcc
Confidence 5899999999999885 3467889999999999999876 344333222346899999999999887666655
Q ss_pred EecCHHHHHHHHHHHhh
Q psy14417 73 IQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 73 i~~d~~~~l~~L~~~l~ 89 (120)
+ ..+++.|.+.+.
T Consensus 337 ~----~~~l~~L~~~l~ 349 (565)
T 2nxw_A 337 L----AGLVDALLERLP 349 (565)
T ss_dssp H----HHHHHHHHHTSC
T ss_pred H----HHHHHHHHHhcc
Confidence 4 688888887654
No 23
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=99.15 E-value=5.4e-13 Score=88.87 Aligned_cols=83 Identities=12% Similarity=0.133 Sum_probs=57.2
Q ss_pred CCCCCCCCCCc--cc--cChH-------HH---HhhhhcCEEEEeCCCC--CcccccCCCCCCCCCCeEEEEcCChhhhh
Q psy14417 1 MGKGVVPDAHP--NC--VSAA-------RT---HALQNADLVLLLGARL--NWMLHFGRAPRFKSNVKIIQVDLNAEELH 64 (120)
Q Consensus 1 ~~kg~~~~~hp--~~--~G~~-------~~---~~l~~aDlil~iG~~~--~~~~~~~~~~~~~~~~~vi~Id~d~~~i~ 64 (120)
+|||+||++|| +| +|.. ++ +++++|||||++|+++ +++ .++.+..+.+ +++|+|+.+.....
T Consensus 70 ~gkg~~~~~hp~~~~~~~G~~G~~~~~~~~~~~~~~~~aDlvl~iG~~~~~~~~-~t~~~~~~~~-~~iI~i~~~~~~~~ 147 (170)
T 3cf4_G 70 SSLAVLADKDVDAKYINAHMLGFYLTDPKWPGLDGNGNYDMIITIGFKKFYINQ-VLSAAKNFSN-LKTIAIERGYIQNA 147 (170)
T ss_dssp TTHHHHTTSSSCEEECCHHHHHHHTTCTTCCCSSSSCCCSEEEEESCCHHHHHH-HHHHHHHHCC-CCEEECSSSCCTTS
T ss_pred ccCcccCCCChhhhcceeeeccccCChhhhhHHHHhhcCCEEEEECCccCcccc-ccccccccCC-CeEEEECCCcccch
Confidence 68999999999 99 8762 34 7789999999999999 776 3433434445 78997775543222
Q ss_pred hccccceEEecCHHHHHHHHHHHhh
Q psy14417 65 NSVQAAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 65 ~~~~~~~~i~~d~~~~l~~L~~~l~ 89 (120)
......+. .+++|+.|.+.+.
T Consensus 148 ~~~~~~l~----~~~~l~~L~~~~~ 168 (170)
T 3cf4_G 148 TMSFGNLS----KADHYAALDELIN 168 (170)
T ss_dssp SEECCCCC----HHHHHHHHHHHHH
T ss_pred hhhhccCC----HHHHHHHHHHHHh
Confidence 22233443 4788888876553
No 24
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=98.77 E-value=1.2e-10 Score=77.85 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=40.9
Q ss_pred CCCCCCCC-CC-c--cccC--hHHHHhh----------hhcCEEEEeCCCCCccc-ccCCCCCCCCCCeEEEEc
Q psy14417 1 MGKGVVPD-AH-P--NCVS--AARTHAL----------QNADLVLLLGARLNWML-HFGRAPRFKSNVKIIQVD 57 (120)
Q Consensus 1 ~~kg~~~~-~h-p--~~~G--~~~~~~l----------~~aDlil~iG~~~~~~~-~~~~~~~~~~~~~vi~Id 57 (120)
||+|.||+ +| | +++| ..++... ++|||||+||++|++.. .++.+..|.+++++||||
T Consensus 69 ~g~g~~~~~~~~p~~~~~G~~~~g~~~~~~~~~~~~~~~~aDLvI~iG~rf~~~~~~t~~~~~fap~akii~Id 142 (174)
T 1ytl_A 69 SAITRFIDAGLGEKVNYAVLHELTQFLLDPDWKGFDGQGNYDLVLMLGSIYYHGSQMLAAIKNFAPHIRALAID 142 (174)
T ss_dssp THHHHHHHTTCGGGSEEECHHHHHHHHHSTTCCCTTSSCCCSEEEEESCCHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred cccCcCCCCCCCccccccccHHHHHHhhhhhhhhhcccCCCCEEEEECCcCCccccccccccccCCCCeEEEeC
Confidence 57899999 99 8 6677 3444443 89999999999997321 233344455678999985
No 25
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=98.53 E-value=6.5e-07 Score=63.97 Aligned_cols=72 Identities=24% Similarity=0.257 Sum_probs=54.4
Q ss_pred HHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhh-hh-hccccceEEecCHHHHHHHHHHHhh
Q psy14417 18 RTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEE-LH-NSVQAAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~-i~-~~~~~~~~i~~d~~~~l~~L~~~l~ 89 (120)
+.+.+.+||++|+||+++..++..+.......+.++|.||.++.. +. .....++.+.||+.+.+..|.+.+.
T Consensus 191 ~~~~~~~aDlllviGTSl~V~Paa~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~~~g~~~~~~~~L~~~lg 264 (285)
T 3glr_A 191 HVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHPRSRDVAQLGDVVHGVESLVELLG 264 (285)
T ss_dssp HHHHHHHCSEEEEESCCCCEETTGGGGGSSCTTSCEEEEESSCCTHHHHSCCTTEEEEESCHHHHHHHHHHHHT
T ss_pred HHHHHhcCCEEEEeCCCCccccHHHHHHHHhCCCcEEEECCCCcCccccCCCCccEEEcCCHHHHHHHHHHHhC
Confidence 356678999999999999877543333333456789999998853 22 2346899999999999999998875
No 26
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=98.23 E-value=2.4e-06 Score=62.02 Aligned_cols=72 Identities=13% Similarity=0.144 Sum_probs=51.6
Q ss_pred HHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhc------------------cccceEEecCHHH
Q psy14417 18 RTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNS------------------VQAAVAIQSDVRL 79 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~------------------~~~~~~i~~d~~~ 79 (120)
+.+.+++||++|+||+++..++..+.......+..+|.||.++...... ...++.+.||+.+
T Consensus 214 a~~~~~~aDlllviGTSl~V~P~a~l~~~~~~~~~~v~IN~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~gd~~~ 293 (323)
T 1j8f_A 214 MQSDFLKVDLLLVMGTSLQVQPFASLISKAPLSTPRLLINKEKAGQSDPFLGMIMGLGGGMDFDSKKAYRDVAWLGECDQ 293 (323)
T ss_dssp HHHGGGSCSEEEEESSCSCSHHHHHHHTTSCTTCCEEEEESSCCCCCCHHHHHHHHHHTCCCSSSTTCCSEEEEESCHHH
T ss_pred HHHHHhCCCEEEEEeeCcccHHHHHHHHHHHcCCcEEEEeCCCCCCCcccccccccccccccccccccceeEEEeCCHHH
Confidence 4567889999999999998764333222233345678899887654321 2368899999999
Q ss_pred HHHHHHHHhh
Q psy14417 80 TVQQLKQMLS 89 (120)
Q Consensus 80 ~l~~L~~~l~ 89 (120)
++..|.+.+.
T Consensus 294 ~l~~L~~~lg 303 (323)
T 1j8f_A 294 GCLALAELLG 303 (323)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 9999987764
No 27
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=98.06 E-value=6.6e-06 Score=60.41 Aligned_cols=69 Identities=10% Similarity=0.076 Sum_probs=53.1
Q ss_pred HHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEEecCHHHHHHHHHHHhh
Q psy14417 18 RTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~~l~~L~~~l~ 89 (120)
+.+.+++||++|+||+++..++..+.......+.++|.||.++... ...++.|.|++.+++..|.+.+.
T Consensus 249 a~~~~~~aDllLviGTSL~V~Paa~lv~~~~~~~~~v~IN~~~t~~---~~~dl~i~g~~~~vl~~L~~~lg 317 (354)
T 2hjh_A 249 IREDILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKH---AEFDLSLLGYCDDIAAMVAQKCG 317 (354)
T ss_dssp HHHHTTTCCEEEEESCCCCEETGGGHHHHSCTTSCEEEEESSCCTT---SCCSEEEESCHHHHHHHHHHHHT
T ss_pred HHHHHhhCCEEEEECcCCCchhHHHHHHHHhcCCcEEEEcCCCCCC---CCcCEEEeCCHHHHHHHHHHHcC
Confidence 4567889999999999998764333222233467899999988653 24789999999999999998886
No 28
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=98.04 E-value=7.3e-06 Score=62.22 Aligned_cols=69 Identities=10% Similarity=0.076 Sum_probs=53.5
Q ss_pred HHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEEecCHHHHHHHHHHHhh
Q psy14417 18 RTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~~l~~L~~~l~ 89 (120)
+.+.+++||++|+||+++..++..+....+..+.++|.||.++... ...++.+.|++.+++..|.+.+.
T Consensus 387 a~~~~~~aDLlLVIGTSL~VyPaA~Lv~~a~~~~p~ViIN~ept~~---~~~Dl~l~G~cdevv~~L~~~LG 455 (492)
T 4iao_A 387 IREDILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKH---AEFDLSLLGYCDDIAAMVAQKCG 455 (492)
T ss_dssp HHHHTTTCSEEEEESCCCCEETGGGHHHHSBTTSCEEEEESSCCTT---SCCSEEEESCHHHHHHHHHHHTT
T ss_pred HHHHHhhCCEEEEeccCCCccchhhHHHHHhcCCcEEEEcCCCCCC---CCccEEEeCCHHHHHHHHHHHhC
Confidence 4467889999999999998765433222234567899999988652 34799999999999999999886
No 29
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=97.97 E-value=7.6e-06 Score=58.48 Aligned_cols=69 Identities=16% Similarity=0.177 Sum_probs=49.2
Q ss_pred hhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhh-hh-hccccceEEecCHHHHHHHHHHHhh
Q psy14417 21 ALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEE-LH-NSVQAAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 21 ~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~-i~-~~~~~~~~i~~d~~~~l~~L~~~l~ 89 (120)
.+.+||++|+||+++..++..+.......++++|.||.++.. +. .....++.+.||+.++|..|.+.+.
T Consensus 208 ~~~~~DlllviGTSl~V~Pa~~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~i~~~~~~~l~~l~~~l~ 278 (289)
T 1q1a_A 208 KHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELG 278 (289)
T ss_dssp --CCCCEEEEESCCCCEETTTHHHHHSCTTSEEEEESSSCCTHHHHSCCTTCEEECCCHHHHHHHHHHHHT
T ss_pred HhccCCEEEEEccCCChhhHHHHHHHHhcCCCEEEEECCCcccCCCCCcceeEEEeCCHHHHHHHHHHHcC
Confidence 467999999999999866432211122347889999998864 22 1234789999999999999987764
No 30
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=97.95 E-value=1.4e-05 Score=58.59 Aligned_cols=69 Identities=23% Similarity=0.285 Sum_probs=53.5
Q ss_pred HHHhhhhcCEEEEeCCCCCcccccCCCCCC--CCCCeEEEEcCChhhhhhccccceEEecCHHHHHHHHHHHhh
Q psy14417 18 RTHALQNADLVLLLGARLNWMLHFGRAPRF--KSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~~~~~~~~~--~~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~~l~~L~~~l~ 89 (120)
+.+.+++||++|+||+++..++..+ +... ..+.++|.||.++..... ..++.|.+++.++|..|.+.+.
T Consensus 200 A~~~~~~aDllLViGTSL~V~Paa~-Lp~~a~~~G~~vviIN~~pT~~d~--~adl~i~g~a~evl~~L~~~Lg 270 (355)
T 3pki_A 200 ADEASRNADLSITLGTSLQIRPSGN-LPLATKRRGGRLVIVNLQPTKHDR--HADLRIHGYVDEVMTRLMEHLG 270 (355)
T ss_dssp HHHHHHHCSEEEEESCCCCSTTGGG-TTHHHHHTTCEEEEECSSCCTTGG--GCSEEECSCHHHHHHHHHHHTT
T ss_pred HHHHHhcCCEEEEEeeCCCchhhhh-hHHHHHhcCCEEEEECCCCCCCCC--ccCEEEeCCHHHHHHHHHHHhC
Confidence 4567899999999999998765333 2111 246789999999876543 4788999999999999998874
No 31
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=97.94 E-value=1.9e-05 Score=58.16 Aligned_cols=69 Identities=16% Similarity=0.177 Sum_probs=48.7
Q ss_pred hhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhh-hh-hccccceEEecCHHHHHHHHHHHhh
Q psy14417 21 ALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEE-LH-NSVQAAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 21 ~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~-i~-~~~~~~~~i~~d~~~~l~~L~~~l~ 89 (120)
.+.+||++|+||+++..++..+.......++++|.||.++.. +. .....++.+.||+.++|..|.+.+.
T Consensus 216 ~~~~aDllLviGTSl~V~Paa~l~~~~~~g~~~v~IN~~~t~~~~~~~~~~d~~i~g~~~evl~~L~~~Lg 286 (361)
T 1q14_A 216 KHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELG 286 (361)
T ss_dssp ---CCCEEEEESCCCCSTTGGGHHHHSCTTSEEEEESSSCCHHHHHTCCTTCEEECSCHHHHHHHHHHHHT
T ss_pred hhccCCEEEEECCCCCchhHHHHHHHHhcCCeEEEEeCCCccccccCcccccEEEeCCHHHHHHHHHHHcC
Confidence 466999999999999876433322222347889999998864 22 2234789999999999999987763
No 32
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=97.88 E-value=1e-05 Score=56.25 Aligned_cols=70 Identities=16% Similarity=0.139 Sum_probs=51.8
Q ss_pred HHHHhhhhcCEEEEeCCCCCcccccCCCCCC--CCCCeEEEEcCChhhhhhccccceEEecCHHHHHHHHHHHhh
Q psy14417 17 ARTHALQNADLVLLLGARLNWMLHFGRAPRF--KSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 17 ~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~--~~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~~l~~L~~~l~ 89 (120)
.+.+.+++||++|++|+++..++..+ +... ..++++|.||.++..... ..++.+.+++.++|+.|.+.+.
T Consensus 160 ~a~~~~~~adl~lviGTSl~V~Pa~~-l~~~a~~~g~~~i~iN~~~t~~~~--~~~~~i~~~~~~~l~~l~~~l~ 231 (235)
T 1s5p_A 160 EIYMALSMADIFIAIGTSGHVYPAAG-FVHEAKLHGAHTVELNLEPSQVGN--EFAEKYYGPASQVVPEFVEKLL 231 (235)
T ss_dssp HHHHHHHHCSEEEEESCCTTEETGGG-HHHHHHHTTCEEEEEESSSCC-----CCSEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEECcCCchhhHHH-HHHHHHHcCCeEEEEECCCCCCCc--cccEEEeCCHHHHHHHHHHHHH
Confidence 35678899999999999998654322 2111 137899999999876653 4788999999999999987663
No 33
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=97.86 E-value=1.4e-05 Score=57.89 Aligned_cols=69 Identities=23% Similarity=0.279 Sum_probs=53.1
Q ss_pred HHHhhhhcCEEEEeCCCCCcccccCCCCC--CCCCCeEEEEcCChhhhhhccccceEEecCHHHHHHHHHHHhh
Q psy14417 18 RTHALQNADLVLLLGARLNWMLHFGRAPR--FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~~~~~~~~--~~~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~~l~~L~~~l~ 89 (120)
+.+.+++||++|++|+++..++..+ +.. ...+.++|.||.++..... ..++.|.+++.++|..|.+.+.
T Consensus 200 a~~~~~~aDllLViGTSL~V~Paa~-l~~~a~~~G~~vviIN~~~t~~d~--~adl~i~g~~~evl~~L~~~Lg 270 (318)
T 3k35_A 200 ADEASRNADLSITLGTSLQIRPSGN-LPLATKRRGGRLVIVNLQPTKHDR--HADLRIHGYVDEVMTRLMKHLG 270 (318)
T ss_dssp HHHHHHTCSEEEEESCCCCSTTGGG-HHHHHHHTTCEEEEECSSCCTTGG--GCSEEECSCHHHHHHHHHHHHT
T ss_pred HHHHHhcCCEEEEEccCCCchhhhh-hHHHHHhcCCEEEEECCCCCCCCC--cccEEEeCCHHHHHHHHHHHhC
Confidence 4567889999999999998764322 211 1246789999999876543 4789999999999999998874
No 34
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=97.79 E-value=1.5e-05 Score=56.62 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=50.4
Q ss_pred HHHhhhhcCEEEEeCCCCCcccccCCCC-CCCCCCeEEEEcCChhhhhhccccceEEecCHHHHHHHHH
Q psy14417 18 RTHALQNADLVLLLGARLNWMLHFGRAP-RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLK 85 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~~~~~~~-~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~~l~~L~ 85 (120)
+.+.+++|||+|+||+++..++..+... ....++++|.||.++..... ..++.+.|++.++|..|+
T Consensus 206 a~~~~~~aDl~lviGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~d~--~~~~~i~g~~~~~l~~l~ 272 (273)
T 3riy_A 206 VDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATN--RFRFHFQGPCGTTLPEAL 272 (273)
T ss_dssp HHHHHHHCSEEEEESCCSCEETGGGHHHHHHHTTCCEEEEESSCCTTGG--GSSEEEESCHHHHHHHHH
T ss_pred HHHHHhcCCEEEEEeeCCcchhHHHhHHHHHHCCCEEEEECCCCCCCCc--ceeEEEeCCHHHHHHHHh
Confidence 4567889999999999998764332111 12257899999999877654 478899999999999875
No 35
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=97.74 E-value=2.8e-05 Score=54.38 Aligned_cols=69 Identities=13% Similarity=0.214 Sum_probs=52.4
Q ss_pred HHHhhhhcCEEEEeCCCCCcccccCCCCCC--CCCCeEEEEcCChhhhhhccccceEEecCHHHHHHHHHHHhh
Q psy14417 18 RTHALQNADLVLLLGARLNWMLHFGRAPRF--KSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~~~~~~~~~--~~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~~l~~L~~~l~ 89 (120)
+.+.+++||++|++|+++..++..+ .... ..++++|.||.++..... ..++.+.+++.++|+.|.+.+.
T Consensus 171 a~~~~~~adlllviGTSl~V~P~~~-l~~~a~~~g~~~i~IN~~~~~~d~--~~~~~i~~~~~~~l~~l~~~l~ 241 (249)
T 1m2k_A 171 AMREVERADVIIVAGTSAVVQPAAS-LPLIVKQRGGAIIEINPDETPLTP--IADYSLRGKAGEVMDELVRHVR 241 (249)
T ss_dssp HHHHHHHCSEEEEESCCSCSTTGGG-HHHHHHHTTCEEEEECSSCCTTGG--GCSEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCEEEEEccCCCccchHH-HHHHHHHcCCeEEEEeCCCCCCCc--ceeEEEeCCHHHHHHHHHHHHH
Confidence 4567889999999999987654222 1111 247899999999877643 3689999999999999987764
No 36
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=97.73 E-value=1.6e-05 Score=55.57 Aligned_cols=69 Identities=19% Similarity=0.204 Sum_probs=52.4
Q ss_pred HHHhhhhcCEEEEeCCCCCcccccCCCCCC--CCCCeEEEEcCChhhhhhccccceEEecCHHHHHHHHHHHhh
Q psy14417 18 RTHALQNADLVLLLGARLNWMLHFGRAPRF--KSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~~~~~~~~~--~~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~~l~~L~~~l~ 89 (120)
+.+.+++||++|++|+++..++..+ .... ..++++|.||.++..... ..++.+.+++.++|+.|.+.+.
T Consensus 174 a~~~~~~adl~lviGTSl~V~P~~~-l~~~a~~~g~~~i~IN~~~~~~d~--~~~~~i~~~~~~~l~~l~~~lg 244 (246)
T 1yc5_A 174 AIGLSSRASLMIVLGSSLVVYPAAE-LPLITVRSGGKLVIVNLGETPFDD--IATLKYNMDVVEFARRVMEEGG 244 (246)
T ss_dssp HHHHHHHCSEEEEESCCSCEETGGG-HHHHHHHHTCEEEEECSSCCTTGG--GCSEEECSCHHHHHHHHHHHHT
T ss_pred HHHHHhcCCEEEEECCCCcchhHHH-HHHHHHHcCCeEEEEeCCCCCCCc--ceeEEEeCCHHHHHHHHHHHcC
Confidence 4567889999999999987654322 2111 237899999999877643 3689999999999999987763
No 37
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=97.70 E-value=2.1e-05 Score=55.22 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=52.7
Q ss_pred HHHhhhhcCEEEEeCCCCCcccccCCCCCC--CCCCeEEEEcCChhhhhhccccceEEecCHHHHHHHHHHHhh
Q psy14417 18 RTHALQNADLVLLLGARLNWMLHFGRAPRF--KSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~~~~~~~~~--~~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~~l~~L~~~l~ 89 (120)
+.+.+++||++|+||+++..++..+ +... ..++++|.||.++..... ..++.+.+++.++|+.|.+.+.
T Consensus 177 a~~~~~~adl~lviGTSl~V~P~~~-l~~~a~~~g~~~i~iN~~~~~~d~--~~~~~i~~~~~~~l~~l~~~l~ 247 (253)
T 1ma3_A 177 AIEEAKHCDAFMVVGSSLVVYPAAE-LPYIAKKAGAKMIIVNAEPTMADP--IFDVKIIGKAGEVLPKIVEEVK 247 (253)
T ss_dssp HHHHHHHCSEEEEESCCSCEETGGG-HHHHHHHHTCEEEEEESSCCTTGG--GCSEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEEECCCceeccHHH-HHHHHHHcCCeEEEEeCCCCCCCC--ceeEEEeCCHHHHHHHHHHHHH
Confidence 4567889999999999987654322 2111 237899999999877643 3689999999999999988765
No 38
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=97.30 E-value=5.5e-05 Score=54.13 Aligned_cols=69 Identities=14% Similarity=0.274 Sum_probs=49.9
Q ss_pred HHHhhhhcCEEEEeCCCCCcccccCCCCCC--CCCCeEEEEcCChhhhhhccccceEEecCHHHHHHHHHHHhh
Q psy14417 18 RTHALQNADLVLLLGARLNWMLHFGRAPRF--KSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~~~~~~~~~--~~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~~l~~L~~~l~ 89 (120)
+.+.+++||++|+||+++..++..+ +... ..++++|.||.++..+... ..++.+.|++.++++ |.+.+.
T Consensus 210 a~~~~~~aDllLviGTSl~V~Paa~-l~~~a~~~g~~~v~IN~~~t~~~~~-~~d~~i~g~a~~vl~-~~~~l~ 280 (290)
T 3u31_A 210 AEEEIAKCDLLLVIGTSSTVSTATN-LCHFACKKKKKIVEINISKTYITNK-MSDYHVCAKFSELTK-VANILK 280 (290)
T ss_dssp HHHHHHHCSEEEEESCCSCSHHHHH-HHHHHHHTTCCEEEEESSCCTTTTT-TCSEEEESCGGGHHH-HHHHHH
T ss_pred HHHHHhcCCEEEEECcCCcchhHHH-HHHHHHHcCCEEEEECCCCCCCCCc-cceEEEECCHHHHHH-HHHHHh
Confidence 4567889999999999998764322 2111 2578899999998766432 368899999999876 556665
No 39
>3c2q_A Uncharacterized conserved protein; putative LOR/SDH, structural genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis S2}
Probab=95.16 E-value=0.045 Score=39.55 Aligned_cols=68 Identities=19% Similarity=0.330 Sum_probs=53.1
Q ss_pred HHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhh----ccccceEEecCHHHHHHHHHHHhh
Q psy14417 19 THALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHN----SVQAAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 19 ~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~----~~~~~~~i~~d~~~~l~~L~~~l~ 89 (120)
.+.++.+|+||++.+-+... .+|+. .+...+++-||++|....+ .....+.++.|+.+||..|.+.|.
T Consensus 268 r~~~~~a~~vimlaTmLHSI-AtGNm--~Ps~v~~~cVDInp~~VtKL~DRGs~qa~giVTdvg~Fl~~L~~~L~ 339 (345)
T 3c2q_A 268 RTTVMDKKMVIMLSTLLHSV-ATGNL--MPSYIKTVCVDIQPSTVTKLMDRGTSQAIGVVTDVGVFLVLLLKELE 339 (345)
T ss_dssp HHHHTTCSEEEEESCHHHHH-HHHTT--CCTTSEEEEEESCHHHHHHHHHTCCSSEEEEESCHHHHHHHHHHHHH
T ss_pred HHHhccCCchHHHHHHHHHH-Hhccc--CcccceEEEEECCHHHhhhhhccCceeEEEEEecHHHHHHHHHHHHH
Confidence 46789999999999887654 45543 3345679999999987664 344678999999999999988775
No 40
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=92.60 E-value=0.21 Score=35.94 Aligned_cols=64 Identities=20% Similarity=0.226 Sum_probs=45.4
Q ss_pred HhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhh-hhhccccceEEecCHHHHHHHHHHHhh
Q psy14417 20 HALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEE-LHNSVQAAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 20 ~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~-i~~~~~~~~~i~~d~~~~l~~L~~~l~ 89 (120)
+.+.-|+|-|++|-+=--....| +.....||-||.||.. |- ...|+.|+||+.+++++|++.++
T Consensus 255 k~V~P~~lYiA~GISGAiQHlaG----m~~s~~IVAIN~D~~ApIF--~~ADygiVgDl~~vvP~L~~~l~ 319 (320)
T 1o97_D 255 KVVGSCKLYVAMGISGSIQHMAG----MKHVPTIIAVNTDPGASIF--TIAKYGIVADIFDIEEELKAQLA 319 (320)
T ss_dssp BCCTTCSEEEEESCCCCHHHHHH----HTTCSEEEEECSCTTCGGG--GTCSEEECSCHHHHHHHHHHHC-
T ss_pred eEecccceEEEEeccCcHHHHhh----cccCCEEEEEeCCCCCCcc--cccCeEEeeeHHHHHHHHHHHHh
Confidence 35566799999998743321112 1234579999999854 32 24899999999999999998874
No 41
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=90.75 E-value=0.96 Score=32.46 Aligned_cols=60 Identities=18% Similarity=0.321 Sum_probs=43.6
Q ss_pred hcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhh-hhhccccceEEecCHHHHHHHHHHHhh
Q psy14417 24 NADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEE-LHNSVQAAVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 24 ~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~-i~~~~~~~~~i~~d~~~~l~~L~~~l~ 89 (120)
.-+|-|++|-+=--. ...+ ......||-||.|+.. |- ...|+.|+||+.+++++|++.++
T Consensus 253 ~P~lYiA~GISGAiQ-HlaG---m~~s~~IVAIN~D~~ApIf--~~ADygiVgDl~~v~P~L~~~l~ 313 (315)
T 1efv_A 253 APELYIAVGISGAIQ-HLAG---MKDSKTIVAINKDPEAPIF--QVADYGIVADLFKVVPEMTEILK 313 (315)
T ss_dssp CCSEEEEESCCCCHH-HHTT---TTTCSEEEEEESCTTCGGG--GTCSEEEESCHHHHHHHHHHHTC
T ss_pred CcceEEEecccCcHH-HHhh---cccCCEEEEEeCCCCCCcc--hhcCeEEeeeHHHHHHHHHHHHh
Confidence 468999999775432 2211 2234579999999854 32 24899999999999999999885
No 42
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Probab=89.54 E-value=1.2 Score=31.79 Aligned_cols=59 Identities=19% Similarity=0.265 Sum_probs=41.9
Q ss_pred hcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhh-hhhccccceEEecCHHHHHHHHHHHh
Q psy14417 24 NADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEE-LHNSVQAAVAIQSDVRLTVQQLKQML 88 (120)
Q Consensus 24 ~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~-i~~~~~~~~~i~~d~~~~l~~L~~~l 88 (120)
.-+|-|++|-+=--. ...+ +.....||-||.|+.. |- ...|+.|+||+.+++++|++.+
T Consensus 248 ~P~lYiA~GISGAiQ-HlaG---m~~s~~IVAIN~D~~ApIF--~~ADygiVgDl~~v~P~L~~~l 307 (307)
T 1efp_A 248 APELYVAVGISGAIQ-HLAG---MKDSKVIVAINKDEEAPIF--QIADYGLVGDLFSVVPELTGKL 307 (307)
T ss_dssp CCSEEEEESCCCCHH-HHTT---TTTCSEEEEEESCTTCGGG--GTCSEEEESCHHHHHHHHHHTC
T ss_pred CCceEEEEeccCcHH-HHhh---hccCCEEEEEeCCCCCCcc--cccCeEEeeeHHHHHHHHHhhC
Confidence 468999999775432 2111 2234579999999854 32 2489999999999999998753
No 43
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=82.46 E-value=0.59 Score=30.29 Aligned_cols=69 Identities=7% Similarity=0.042 Sum_probs=40.8
Q ss_pred HHhhhhcCEEEEe-----CCCCCcccccCC-C-CCCCCCCeEEEEcCChhhh------------------h----hcccc
Q psy14417 19 THALQNADLVLLL-----GARLNWMLHFGR-A-PRFKSNVKIIQVDLNAEEL------------------H----NSVQA 69 (120)
Q Consensus 19 ~~~l~~aDlil~i-----G~~~~~~~~~~~-~-~~~~~~~~vi~Id~d~~~i------------------~----~~~~~ 69 (120)
...|++||+||++ |...+.- +.. . ..+..+.+||-+..|.... + -....
T Consensus 62 ~~~i~~aD~vVA~ldpf~g~~~D~G--TafEiGyA~AlgKPVi~l~~d~r~~~~~~~~~~d~~g~~vedf~~~~NLMl~~ 139 (161)
T 2f62_A 62 IQMIKDCDAVIADLSPFRGHEPDCG--TAFEVGCAAALNKMVLTFTSDRRNMREKYGSGVDKDNLRVEGFGLPFNLMLYD 139 (161)
T ss_dssp HHHHHHCSEEEEECCCCSSSSCCHH--HHHHHHHHHHTTCEEEEECSCCSCHHHHHTSSBCTTSCBCCCSSCSSCGGGCC
T ss_pred HHHHHhCCEEEEEecCCCCCCCCCc--HHHHHHHHHHCCCEEEEEEcCchhhhhhcccccccccccccccCCcchhhhhh
Confidence 4689999999999 4444431 110 0 1123467888887664211 1 11122
Q ss_pred ceEEecCHHHHHHHHHHHhh
Q psy14417 70 AVAIQSDVRLTVQQLKQMLS 89 (120)
Q Consensus 70 ~~~i~~d~~~~l~~L~~~l~ 89 (120)
.+.+..+..++|+.|.+.+.
T Consensus 140 ~~~~~~~~~~~l~~l~~~~~ 159 (161)
T 2f62_A 140 GVEVFDSFESAFKYFLANFP 159 (161)
T ss_dssp SSCEESSHHHHHHHHHHHSC
T ss_pred hheeeCCHHHHHHHHHHhhc
Confidence 33377899999988877653
No 44
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=72.54 E-value=7.1 Score=25.58 Aligned_cols=70 Identities=16% Similarity=0.251 Sum_probs=38.2
Q ss_pred HHHhhhhcCEEEEeCCCCCcccc---------cCCCCCCC--CCCeEEEEcCChh----hhhh---ccccceEEecCHHH
Q psy14417 18 RTHALQNADLVLLLGARLNWMLH---------FGRAPRFK--SNVKIIQVDLNAE----ELHN---SVQAAVAIQSDVRL 79 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~~---------~~~~~~~~--~~~~vi~Id~d~~----~i~~---~~~~~~~i~~d~~~ 79 (120)
.+.-+.++|++|+||+.-...+. +| .+.+. ...++|-+-..-. -+.+ ......-+.||++.
T Consensus 92 IN~df~~tDv~lVIGANDvvNpaA~~dp~SpI~G-MPvl~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDAK~ 170 (180)
T 1pno_A 92 INSSFQTADVAFVIGANDVTNPAAKTDPSSPIYG-MPILDVEKAGTVLFIKRSMASGYAGVENELFFRNNTMMLFGDAKK 170 (180)
T ss_dssp HGGGGGGCSEEEEESCCGGGCGGGTTCTTSTTTT-CCCCCGGGSSEEEEEESSSCCCTTCCCCGGGTSTTEEEEESCHHH
T ss_pred HhhhhhhcCEEEEeccccccCchhccCCCCCcCC-CeeechhhCCEEEEEECCCCCCcCCCcCcceecCCceEEeccHHH
Confidence 46678899999999985321111 11 11110 1234444433211 1111 11245568899999
Q ss_pred HHHHHHHHh
Q psy14417 80 TVQQLKQML 88 (120)
Q Consensus 80 ~l~~L~~~l 88 (120)
.+++|...+
T Consensus 171 ~~~~l~~~l 179 (180)
T 1pno_A 171 MTEQIVQAM 179 (180)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998765
No 45
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=69.43 E-value=7.7 Score=25.53 Aligned_cols=69 Identities=16% Similarity=0.214 Sum_probs=37.3
Q ss_pred HHHhhhhcCEEEEeCCCCCccc---------ccCCCCCC-C-CCCeEEEEcCChhh----hhh---ccccceEEecCHHH
Q psy14417 18 RTHALQNADLVLLLGARLNWML---------HFGRAPRF-K-SNVKIIQVDLNAEE----LHN---SVQAAVAIQSDVRL 79 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~---------~~~~~~~~-~-~~~~vi~Id~d~~~----i~~---~~~~~~~i~~d~~~ 79 (120)
.+.-+.++|++|+||+.-...+ .+| .+.+ . ...++|-+-..-.. +.+ ......-+.||++.
T Consensus 99 IN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~G-MPvL~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDAK~ 177 (186)
T 2bru_C 99 INDDFADTDTVLVIGANDTVNPAAQDDPKSPIAG-MPVLEVWKAQNVIVFKRSMNTGYAGVQNPLFFKENTHMLFGDAKA 177 (186)
T ss_dssp CHHHHHHCSEEEECBCGGGGCGGGTTSTTSSSTT-CCCCCCTTSSEEEEECSSSCCSSCCCSCTTTBSSSEEEECSCHHH
T ss_pred HhcccccCCEEEEeccccccCccccCCCCCCcCC-CeeeccccCCEEEEEECCCCCCcCCCcCcceecCCceEEeccHHH
Confidence 4667889999999997532111 011 1111 1 12334444332111 111 11245568899999
Q ss_pred HHHHHHHH
Q psy14417 80 TVQQLKQM 87 (120)
Q Consensus 80 ~l~~L~~~ 87 (120)
.+++|...
T Consensus 178 ~~~~l~~~ 185 (186)
T 2bru_C 178 SVDAILKA 185 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998764
No 46
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=69.02 E-value=15 Score=28.87 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=28.7
Q ss_pred hhhcCEEEEeCCCCCcccccCCCCCC----CCCCeEEEEcCChhhhhh
Q psy14417 22 LQNADLVLLLGARLNWMLHFGRAPRF----KSNVKIIQVDLNAEELHN 65 (120)
Q Consensus 22 l~~aDlil~iG~~~~~~~~~~~~~~~----~~~~~vi~Id~d~~~i~~ 65 (120)
+++||+||++|+.+.+.........+ ..++++|.||+.......
T Consensus 158 ~~~ad~il~~G~n~~~~~p~~~~~~l~~a~~~G~klividPr~t~ta~ 205 (727)
T 2e7z_A 158 FADSNCLLFIGKNLSNHNWVSQFNDLKAALKRGCKLIVLDPRRTKVAE 205 (727)
T ss_dssp TTTCSEEEEESCCCBTTBSHHHHHHHHHHHHHTCEEEEECSSCCHHHH
T ss_pred cccCCEEEEECCChhhcCCHHHHHHHHHHHHCCCeEEEECCCCCcchh
Confidence 68999999999987653110000011 136899999998776654
No 47
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=67.39 E-value=8 Score=25.88 Aligned_cols=70 Identities=16% Similarity=0.251 Sum_probs=38.1
Q ss_pred HHHhhhhcCEEEEeCCCCCcccc---------cCCCCCCC--CCCeEEEEcCChh----hhhh---ccccceEEecCHHH
Q psy14417 18 RTHALQNADLVLLLGARLNWMLH---------FGRAPRFK--SNVKIIQVDLNAE----ELHN---SVQAAVAIQSDVRL 79 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~~---------~~~~~~~~--~~~~vi~Id~d~~----~i~~---~~~~~~~i~~d~~~ 79 (120)
.+.-+.++|++|+||+.-...+. +| .+-+. ...++|-+-..-. -+.+ ...-..-+.||++.
T Consensus 115 IN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~G-MPvL~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDAK~ 193 (203)
T 2fsv_C 115 INSSFQTADVAFVIGANDVTNPAAKTDPSSPIYG-MPILDVWKAGTVLFIKRSMASGYAGVENELFFRNNTMMLFGDAKK 193 (203)
T ss_dssp HGGGSTTCSEEEEESCCGGGCGGGTSCTTSTTTT-CCCCCGGGSSEEEEEESSSCCCTTCCCCGGGGSTTEEEEESCHHH
T ss_pred HhhhhhhcCEEEEeccccccCchhhcCCCCCcCC-CeeeccccCCEEEEEECCCCCCcCCCcCcceecCCceEEeccHHH
Confidence 45678899999999985321111 11 11110 1234454443211 1111 11245568899999
Q ss_pred HHHHHHHHh
Q psy14417 80 TVQQLKQML 88 (120)
Q Consensus 80 ~l~~L~~~l 88 (120)
.+++|...+
T Consensus 194 ~~~~l~~~l 202 (203)
T 2fsv_C 194 MTEQIVQAM 202 (203)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 999998765
No 48
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=65.24 E-value=14 Score=29.36 Aligned_cols=44 Identities=20% Similarity=0.282 Sum_probs=28.8
Q ss_pred hhhcCEEEEeCCCCCcccccCCCC----CCCCCCeEEEEcCChhhhhh
Q psy14417 22 LQNADLVLLLGARLNWMLHFGRAP----RFKSNVKIIQVDLNAEELHN 65 (120)
Q Consensus 22 l~~aDlil~iG~~~~~~~~~~~~~----~~~~~~~vi~Id~d~~~i~~ 65 (120)
+++||+||++|+.+.+........ ....++++|.||+.......
T Consensus 197 ~~~ad~il~~G~n~~~~~p~~~~~~~~~a~~~G~klividPr~t~ta~ 244 (765)
T 2vpz_A 197 WENARYIVLIGHHIGEDTHNTQLQDFALALKNGAKVVVVDPRFSTAAA 244 (765)
T ss_dssp GGGCSEEEEESCCBTTBCCHHHHHHHHHHHHTTCEEEEECSBCCTTGG
T ss_pred cccCCEEEEEeCChhhcCChHHHHHHHHHHHCCCEEEEECCCCCcchh
Confidence 789999999999876531101000 11247899999988766554
No 49
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=64.26 E-value=8.2 Score=25.40 Aligned_cols=71 Identities=20% Similarity=0.288 Sum_probs=39.9
Q ss_pred HHHhhhhcCEEEEeCCCCCccc---------ccCCCCCCC--CCCeEEEEcCChh----hhhh---ccccceEEecCHHH
Q psy14417 18 RTHALQNADLVLLLGARLNWML---------HFGRAPRFK--SNVKIIQVDLNAE----ELHN---SVQAAVAIQSDVRL 79 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~---------~~~~~~~~~--~~~~vi~Id~d~~----~i~~---~~~~~~~i~~d~~~ 79 (120)
.+.-+.++|++|+||+.-...+ .+| .+.+. ....+|-+-..-. -+.+ ......-+.||++.
T Consensus 91 IN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~G-MPvl~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDAK~ 169 (184)
T 1d4o_A 91 INHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAG-MPVLEVWKSKQVIVMKRSLGVGYAAVDNPIFYKPNTAMLLGDAKK 169 (184)
T ss_dssp HGGGGGGCSEEEEESCSGGGCTHHHHCTTSTTTT-CCCCCGGGSSCEEEEESSSCCCTTCCCCGGGGSTTEEEEESCHHH
T ss_pred HhhhhhhcCEEEEecCCccCCCccccCCCCCccC-CeeeehhhCCEEEEEECCCCCCcCCCcCcceecCCceEEeccHHH
Confidence 4667889999999998532110 111 11111 1234454443211 1111 11245568899999
Q ss_pred HHHHHHHHhh
Q psy14417 80 TVQQLKQMLS 89 (120)
Q Consensus 80 ~l~~L~~~l~ 89 (120)
.+++|...+.
T Consensus 170 ~~~~l~~~l~ 179 (184)
T 1d4o_A 170 TCDALQAKVR 179 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998886
No 50
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=62.23 E-value=8.7 Score=25.79 Aligned_cols=71 Identities=20% Similarity=0.288 Sum_probs=40.1
Q ss_pred HHHhhhhcCEEEEeCCCCCccc---------ccCCCCCCC--CCCeEEEEcCChh----hhhh---ccccceEEecCHHH
Q psy14417 18 RTHALQNADLVLLLGARLNWML---------HFGRAPRFK--SNVKIIQVDLNAE----ELHN---SVQAAVAIQSDVRL 79 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~~~---------~~~~~~~~~--~~~~vi~Id~d~~----~i~~---~~~~~~~i~~d~~~ 79 (120)
.+.-+.++|++|+||+.-...+ .+| .+-+. ...++|-+-..-. -+.+ ......-+.||++.
T Consensus 114 IN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~G-MPvL~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDAK~ 192 (207)
T 1djl_A 114 INHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAG-MPVLEVWKSKQVIVMKRSLGVGYAAVDNPIFYKPNTAMLLGDAKK 192 (207)
T ss_dssp HGGGGGGCSEEEEESCCGGGCTHHHHCTTSTTTT-CCCCCGGGSSEEEEEESSSCCCTTCCCCGGGGSTTEEEEESCHHH
T ss_pred HhhhhhhcCEEEEeccccccCCccccCCCCCccC-CeeecceecCEEEEEECCCCCCcCCCcCcceecCCceEEeccHHH
Confidence 4667889999999998532110 111 11111 1234555443211 1111 11245568899999
Q ss_pred HHHHHHHHhh
Q psy14417 80 TVQQLKQMLS 89 (120)
Q Consensus 80 ~l~~L~~~l~ 89 (120)
.+++|...++
T Consensus 193 ~~~~l~~~l~ 202 (207)
T 1djl_A 193 TCDALQAKVR 202 (207)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998886
No 51
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*
Probab=60.49 E-value=2.3 Score=33.50 Aligned_cols=45 Identities=22% Similarity=0.232 Sum_probs=28.8
Q ss_pred hhhhcCEEEEeCCCCCccccc-C-CC-CCCCCCCeEEEEcCChhhhhh
Q psy14417 21 ALQNADLVLLLGARLNWMLHF-G-RA-PRFKSNVKIIQVDLNAEELHN 65 (120)
Q Consensus 21 ~l~~aDlil~iG~~~~~~~~~-~-~~-~~~~~~~~vi~Id~d~~~i~~ 65 (120)
-+++||+||++|+.+.+.... . .+ .....++++|.||+.......
T Consensus 163 di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~G~klividPr~t~ta~ 210 (715)
T 2iv2_X 163 EIDNTDLVFVFGYNPADSHPIVANHVINAKRNGAKIIVCDPRKIETAR 210 (715)
T ss_dssp GGGGCSEEEEESCCHHHHCHHHHHHHHHHHHTTCEEEEECSSCCHHHH
T ss_pred HHhcCCEEEEEcCChHHhCHHHHHHHHHHHHCCCeEEEEcCCCCchhH
Confidence 368999999999986432100 0 00 011246899999998876654
No 52
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*
Probab=58.22 E-value=9.9 Score=29.88 Aligned_cols=44 Identities=20% Similarity=0.226 Sum_probs=28.2
Q ss_pred hhhcCEEEEeCCCCCcccc-cC-CC-CCCCC--CCeEEEEcCChhhhhh
Q psy14417 22 LQNADLVLLLGARLNWMLH-FG-RA-PRFKS--NVKIIQVDLNAEELHN 65 (120)
Q Consensus 22 l~~aDlil~iG~~~~~~~~-~~-~~-~~~~~--~~~vi~Id~d~~~i~~ 65 (120)
+++||+||++|+.+.+... .. .+ ..... ++++|.||+.......
T Consensus 164 ~~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~~g~klividP~~t~ta~ 212 (723)
T 2nap_A 164 IDQATCFFIIGSNTSEAHPVLFRRIARRKQVEPGVKIIVADPRRTNTSR 212 (723)
T ss_dssp GGTCSEEEEESCCHHHHSHHHHHHHHHHHHHCTTCEEEEECSBCCGGGG
T ss_pred HhHCCEEEEEcCChhHhCcHHHHHHHHHHhhCCCCEEEEEcCcCCchhh
Confidence 6899999999998644210 00 00 01112 7899999988776654
No 53
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=50.43 E-value=2.6 Score=34.56 Aligned_cols=43 Identities=7% Similarity=0.142 Sum_probs=28.4
Q ss_pred hhhcCEEEEeCCCCCcccccCCCCCC----CCCCeEEEEcCChhhhhh
Q psy14417 22 LQNADLVLLLGARLNWMLHFGRAPRF----KSNVKIIQVDLNAEELHN 65 (120)
Q Consensus 22 l~~aDlil~iG~~~~~~~~~~~~~~~----~~~~~vi~Id~d~~~i~~ 65 (120)
+++||+||++|+.+.+.. ......+ ..++++|.||+.......
T Consensus 244 ~~nad~Il~~G~N~~~~~-p~~~~~~~~ar~~GakvivVDPr~t~ta~ 290 (976)
T 2ivf_A 244 LLDAELIFMTCSNWSYTY-PSSYHFLSEARYKGAEVVVIAPDFNPTTP 290 (976)
T ss_dssp GGGCSEEEEESCCHHHHC-TTTHHHHHHHHHHTCEEEEECSSCCTTGG
T ss_pred HhhCcEEEEeCCChhHcc-cHHHHHHHHHHHcCCEEEEECCCCCcchh
Confidence 679999999999875431 1111111 136899999998766543
No 54
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Probab=47.24 E-value=11 Score=31.10 Aligned_cols=43 Identities=16% Similarity=0.168 Sum_probs=28.5
Q ss_pred hhhcCEEEEeCCCCCcccccCCCC----CC-CCCCeEEEEcCChhhhhh
Q psy14417 22 LQNADLVLLLGARLNWMLHFGRAP----RF-KSNVKIIQVDLNAEELHN 65 (120)
Q Consensus 22 l~~aDlil~iG~~~~~~~~~~~~~----~~-~~~~~vi~Id~d~~~i~~ 65 (120)
+++||+||++|+.+.+.. ...+. .. ..++++|.||+.......
T Consensus 220 ~~~ad~il~~G~N~~~~~-p~~~~~i~~a~~~~GaklivIDPr~t~ta~ 267 (1015)
T 1kqf_A 220 IKNANVVMVMGGNAAEAH-PVGFRWAMEAKNNNDATLIVVDPRFTRTAS 267 (1015)
T ss_dssp GGGCSEEEEESCCHHHHS-TTTTHHHHHHHHHSCCEEEEECSSCCHHHH
T ss_pred HhhCCEEEEECCChhhhC-chHHHHHHHHHHHCCCeEEEEeCCCCchhH
Confidence 689999999999875431 11111 11 247899999998766543
No 55
>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A* 1ogy_A* 2nya_A*
Probab=46.62 E-value=2.5 Score=33.99 Aligned_cols=45 Identities=16% Similarity=0.296 Sum_probs=29.0
Q ss_pred hhhhcCEEEEeCCCCCcccc--cCCCC-CC--CCCCeEEEEcCChhhhhh
Q psy14417 21 ALQNADLVLLLGARLNWMLH--FGRAP-RF--KSNVKIIQVDLNAEELHN 65 (120)
Q Consensus 21 ~l~~aDlil~iG~~~~~~~~--~~~~~-~~--~~~~~vi~Id~d~~~i~~ 65 (120)
-+++||+||++|+.+.+... ..... .. ..++++|.||+.......
T Consensus 175 d~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~~G~klivIDPr~t~ta~ 224 (802)
T 3ml1_A 175 DFEAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKTRVVVLSTFTHRCFD 224 (802)
T ss_dssp GGGTCSEEEEESCCHHHHSHHHHHHHHHHHHHSTTCEEEEEESSBCGGGG
T ss_pred HHhhCCEEEEECCChHHhChHHHHHHHHHHHhcCCCEEEEEeCCCCchhH
Confidence 46899999999998644210 00010 00 247899999998876653
No 56
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Probab=45.57 E-value=22 Score=28.68 Aligned_cols=43 Identities=9% Similarity=0.026 Sum_probs=28.3
Q ss_pred hhhhcCEEEEeCCCCCccccc-C-CCC-------CCCCCCeEEEEcCChhhhh
Q psy14417 21 ALQNADLVLLLGARLNWMLHF-G-RAP-------RFKSNVKIIQVDLNAEELH 64 (120)
Q Consensus 21 ~l~~aDlil~iG~~~~~~~~~-~-~~~-------~~~~~~~vi~Id~d~~~i~ 64 (120)
.+++||+||++|+.+ +.... + ... ....++++|.||+......
T Consensus 205 ~~~~ad~il~~G~Np-~~~p~~~~~~~~~~~~~~a~~~G~klivIDPr~t~ta 256 (875)
T 1ti6_A 205 GLKHAEMIVFWSSDP-ETNSGIYAGFESNIRRQWLKDLGVDFVFIDPHMNHTA 256 (875)
T ss_dssp HHHHCSEEEEESCCH-HHHCSSSCTTTTHHHHHHHHHTTCEEEEECSBCCHHH
T ss_pred HHhcCCEEEEECCCh-hhCCccCCCccchHHHHHHHHcCCeEEEECCCCCCcc
Confidence 478999999999987 53211 1 010 1124789999998876554
No 57
>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO, molybdopte oxidoreductase; HET: GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB: 4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A* 1e60_A* 1e18_A* 1dms_A*
Probab=44.69 E-value=15 Score=29.16 Aligned_cols=44 Identities=14% Similarity=0.093 Sum_probs=28.1
Q ss_pred hhhhcCEEEEeCCCCCccc-ccCCC------CCC----CCCCeEEEEcCChhhhh
Q psy14417 21 ALQNADLVLLLGARLNWML-HFGRA------PRF----KSNVKIIQVDLNAEELH 64 (120)
Q Consensus 21 ~l~~aDlil~iG~~~~~~~-~~~~~------~~~----~~~~~vi~Id~d~~~i~ 64 (120)
-+++||+||++|+.+.+.. ..+.. ..+ ..++++|.||+......
T Consensus 174 d~~~ad~il~~G~N~~~~~~~~~~~~~~~~~~~l~~a~~~G~klivIDPr~t~ta 228 (780)
T 1eu1_A 174 VVENTDLMVFWAADPMKTNEIGWVIPDHGAYAGMKALKEKGTRVIAINPVRTETA 228 (780)
T ss_dssp HHHHCSEEEEESCCHHHHTTCCSSBCCCHHHHHHHHHHHHTCEEEEESSBCCHHH
T ss_pred HHhhCCEEEEECCCHHHhcCCCCcccccchHHHHHHHHHCCCeEEEECCCCCCcc
Confidence 4789999999999874421 11100 001 13689999998876654
No 58
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=44.59 E-value=18 Score=21.46 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=17.2
Q ss_pred ccccChHHHHhhhhcCEEEEeCC
Q psy14417 11 PNCVSAARTHALQNADLVLLLGA 33 (120)
Q Consensus 11 p~~~G~~~~~~l~~aDlil~iG~ 33 (120)
|-.+-..+.++|++||+|++-..
T Consensus 18 ~~~lT~~a~~~L~~advv~~~~~ 40 (117)
T 3hh1_A 18 LDDMTFRAVNTLRNAGAIACEDT 40 (117)
T ss_dssp GGGSCHHHHHHHHHCSEEEESCH
T ss_pred HHHhhHHHHHHHHhCCEEEEecC
Confidence 44455568899999999998543
No 59
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A {Rhodobacter capsulatus} PDB: 3nei_A
Probab=43.94 E-value=45 Score=22.78 Aligned_cols=44 Identities=11% Similarity=0.188 Sum_probs=26.7
Q ss_pred CccccChHHHHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEc
Q psy14417 10 HPNCVSAARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVD 57 (120)
Q Consensus 10 hp~~~G~~~~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id 57 (120)
+|-.+...+.++|++||+|+.-+....... ...+.++++++...
T Consensus 15 ~~~lLT~~A~~~L~~AdvV~~~~~~~~~~l----l~~~~~~~~~~~~~ 58 (264)
T 3ndc_A 15 AADLITIRGRDLIASCPVCLYAGSLVPEAL----LAHCPPGAKIVNTA 58 (264)
T ss_dssp CGGGSBHHHHHHHHHCSEEEECSTTSCGGG----GGGSCTTCEEEECT
T ss_pred ChHHHHHHHHHHHHcCCEEEEECCCCCHHH----HhhcCCCCEEEecC
Confidence 344455578899999999998776543211 12233455666543
No 60
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Probab=42.85 E-value=4.1 Score=33.49 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=28.1
Q ss_pred hhhcCEEEEeCCCCCcccccCCCC----CCCCCCeEEEEcCChhhhhh
Q psy14417 22 LQNADLVLLLGARLNWMLHFGRAP----RFKSNVKIIQVDLNAEELHN 65 (120)
Q Consensus 22 l~~aDlil~iG~~~~~~~~~~~~~----~~~~~~~vi~Id~d~~~i~~ 65 (120)
+++||+||++|+.+.+.. ...+. ....++++|.||+.......
T Consensus 182 ~~~ad~il~~G~N~~~~~-p~~~~~~~~a~~~G~klivIDPr~t~ta~ 228 (977)
T 1h0h_A 182 LKNSDVILMMGSNPAENH-PISFKWVMRAKDKGATLIHVDPRYTRTST 228 (977)
T ss_dssp GGGCSEEEEESCCHHHHS-TTHHHHHHHHHHTTCEEEEECSSCCTTGG
T ss_pred HhhCCEEEEECCChHHhC-cHHHHHHHHHHHCCCeEEEECCCCCchhH
Confidence 689999999999865421 10010 11247899999988765543
No 61
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=38.35 E-value=37 Score=20.25 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=23.4
Q ss_pred HhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCCh
Q psy14417 20 HALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNA 60 (120)
Q Consensus 20 ~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~ 60 (120)
+-+++||+||+.+....+. ..| .+.+++++++..
T Consensus 53 ~~I~~Ad~VIiA~d~~v~~------~RF-~GK~v~~~~v~~ 86 (106)
T 2r48_A 53 EEIREADAIIIAADRSVNK------DRF-IGKKLLSVGVQD 86 (106)
T ss_dssp HHHHHCSEEEEEESSCCCC------GGG-TTSBEEEECHHH
T ss_pred HHHHhCCEEEEEeCCccCH------hHc-CCCeEEEeCHHH
Confidence 4689999999998654332 223 367899887543
No 62
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=37.78 E-value=25 Score=25.02 Aligned_cols=19 Identities=11% Similarity=0.375 Sum_probs=15.0
Q ss_pred HHHhhhhcCEEEEeCCCCC
Q psy14417 18 RTHALQNADLVLLLGARLN 36 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~ 36 (120)
+.++.+++|++|+||..-+
T Consensus 203 v~~la~~~D~miVVGg~nS 221 (297)
T 3dnf_A 203 VKKLAPEVDVMIIIGGKNS 221 (297)
T ss_dssp HHHHGGGSSEEEEESCTTC
T ss_pred HHHHHhhCCEEEEECCCCC
Confidence 3566789999999998654
No 63
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=37.52 E-value=6.5 Score=31.51 Aligned_cols=17 Identities=12% Similarity=-0.013 Sum_probs=13.5
Q ss_pred CCCeEEEEcCChhhhhh
Q psy14417 49 SNVKIIQVDLNAEELHN 65 (120)
Q Consensus 49 ~~~~vi~Id~d~~~i~~ 65 (120)
.++++|.||+.......
T Consensus 444 ~g~klividPr~t~ta~ 460 (783)
T 3i9v_3 444 RTDKMALFAPYRAPLMK 460 (783)
T ss_dssp CTTSEEEEESSCCGGGT
T ss_pred CCCEEEEEeCCcchhhH
Confidence 46899999998877654
No 64
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=36.88 E-value=38 Score=20.35 Aligned_cols=52 Identities=12% Similarity=0.226 Sum_probs=32.4
Q ss_pred HHhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCChhhhhhccccceEEecCHHHHHHHHHHHh
Q psy14417 19 THALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQML 88 (120)
Q Consensus 19 ~~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~~~i~~~~~~~~~i~~d~~~~l~~L~~~l 88 (120)
.+-+++||+||+.+....+- ...| .+.+++++++...- -|+..+|....+.+
T Consensus 55 ~~~I~~Ad~VIiA~d~~v~~-----~~RF-~GK~v~~~~v~~ai------------~~p~~~l~~a~~~~ 106 (111)
T 2kyr_A 55 AQDIAEATIIIHSVAVTPED-----NERF-ESRDVYEITLQDAI------------KNAAGIIKEIEEMI 106 (111)
T ss_dssp HHHHHHCSEEEEEESSCCTT-----GGGG-TTSCEEEEETTHHH------------HSHHHHHHHHHHHH
T ss_pred HHHHHhCCEEEEEeCCCcCc-----hhhc-CCCeEEEeCHHHHH------------HCHHHHHHHHHHHH
Confidence 35689999999998654321 1223 46789999876532 34566666655444
No 65
>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 3ir7_A* 1y5i_A* 1siw_A* 1y4z_A* 1r27_A* 1y5l_A* 1y5n_A* 3ir6_A* 3ir5_A* 3egw_A*
Probab=35.61 E-value=7.4 Score=33.06 Aligned_cols=43 Identities=12% Similarity=0.047 Sum_probs=27.6
Q ss_pred hhhcCEEEEeCCCCCcccccC--CC-CCCCCCCeEEEEcCChhhhh
Q psy14417 22 LQNADLVLLLGARLNWMLHFG--RA-PRFKSNVKIIQVDLNAEELH 64 (120)
Q Consensus 22 l~~aDlil~iG~~~~~~~~~~--~~-~~~~~~~~vi~Id~d~~~i~ 64 (120)
+.+||+||++|+.+.+..... .. .....++++|.||+......
T Consensus 244 ~~~ad~iv~wGsN~~~t~~~~~~~l~~ar~~G~KvVvIDPr~t~ta 289 (1247)
T 1q16_A 244 WYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAVTPDYAEIA 289 (1247)
T ss_dssp GGGCSEEEEESCCHHHHSGGGHHHHHHHGGGTCEEEEECSSCCHHH
T ss_pred HhhCCEEEEECCCchhccHHHHHHHHHHHHCCCEEEEEeCCCCcch
Confidence 568999999999864321100 00 01124789999999877654
No 66
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=35.03 E-value=38 Score=23.54 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=17.7
Q ss_pred HHHHhhhhcCEEEEeCCCCCcc
Q psy14417 17 ARTHALQNADLVLLLGARLNWM 38 (120)
Q Consensus 17 ~~~~~l~~aDlil~iG~~~~~~ 38 (120)
.-...|.+||+||..|..+..+
T Consensus 53 ~d~~~l~~Adlvv~~G~~lE~w 74 (286)
T 3gi1_A 53 NDVAAIYDADLFVYHSHTLEAW 74 (286)
T ss_dssp HHHHHHHTSSEEEESCTTTSGG
T ss_pred HHHHHHHhCCEEEEcCCCchHH
Confidence 3457889999999999887643
No 67
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=34.67 E-value=19 Score=23.19 Aligned_cols=45 Identities=9% Similarity=0.192 Sum_probs=27.0
Q ss_pred HHhhhhcCEEEEeC--CCCCcccccC-CC-CCCCCCCeEEEEcCChhhhhh
Q psy14417 19 THALQNADLVLLLG--ARLNWMLHFG-RA-PRFKSNVKIIQVDLNAEELHN 65 (120)
Q Consensus 19 ~~~l~~aDlil~iG--~~~~~~~~~~-~~-~~~~~~~~vi~Id~d~~~i~~ 65 (120)
.+.+.+||+||++- ...+. .+. .. ..+..+.+|+-+..|....+.
T Consensus 64 ~~~i~~aD~viA~ldg~~~D~--Gt~~EiG~A~a~gkPVi~~~~D~R~~g~ 112 (162)
T 3ehd_A 64 TENVLASDLLVALLDGPTIDA--GVASEIGVAYAKGIPVVALYTDSRQQGA 112 (162)
T ss_dssp HHHHHTCSEEEEECCSSSCCH--HHHHHHHHHHHTTCCEEEECCCGGGCCT
T ss_pred HHHHHHCCEEEEECCCCCCCC--CHHHHHHHHHHCCCEEEEEEcCcccccC
Confidence 36789999999974 22221 111 00 112346789999888776654
No 68
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=34.51 E-value=37 Score=20.24 Aligned_cols=34 Identities=21% Similarity=0.420 Sum_probs=23.2
Q ss_pred HhhhhcCEEEEeCCCCCcccccCCCCCCCCCCeEEEEcCCh
Q psy14417 20 HALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNA 60 (120)
Q Consensus 20 ~~l~~aDlil~iG~~~~~~~~~~~~~~~~~~~~vi~Id~d~ 60 (120)
+-+++||+||+.+....+. ..| .+.+++++++..
T Consensus 53 ~~I~~Ad~VIiA~d~~v~~------~RF-~GK~v~~~~v~~ 86 (106)
T 2r4q_A 53 QEIEDAPAIIVAADKQVEM------ERF-KGKRVLQVPVTA 86 (106)
T ss_dssp HHHHHCSCEEEEESSCCCC------GGG-TTSBEEEECHHH
T ss_pred HHHHhCCEEEEEeCCccCH------hHc-CCCeEEEeCHHH
Confidence 4689999999998654332 223 367899887543
No 69
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=34.08 E-value=37 Score=23.69 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=17.2
Q ss_pred HHHHhhhhcCEEEEeCCCCCc
Q psy14417 17 ARTHALQNADLVLLLGARLNW 37 (120)
Q Consensus 17 ~~~~~l~~aDlil~iG~~~~~ 37 (120)
.-...+.+||+||..|..+..
T Consensus 59 ~d~~~l~~Adlvv~~G~~lE~ 79 (294)
T 3hh8_A 59 EDAEKTSNADVIFYNGINLED 79 (294)
T ss_dssp HHHHHHHHCSEEEECCTTSSC
T ss_pred HHHHHHHhCCEEEEcCCCccc
Confidence 345788999999999988764
No 70
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=33.76 E-value=28 Score=25.12 Aligned_cols=19 Identities=21% Similarity=0.408 Sum_probs=15.0
Q ss_pred HHHhhhhcCEEEEeCCCCC
Q psy14417 18 RTHALQNADLVLLLGARLN 36 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~ 36 (120)
+.++.+++|++|+||..-+
T Consensus 219 v~~lA~~vD~miVVGg~nS 237 (328)
T 3szu_A 219 VRALAEQAEVVLVVGSKNS 237 (328)
T ss_dssp HHHHHHHCSEEEEECCTTC
T ss_pred HHHHHHhCCEEEEeCCCCC
Confidence 3466789999999998654
No 71
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=32.44 E-value=31 Score=21.93 Aligned_cols=38 Identities=18% Similarity=0.070 Sum_probs=22.4
Q ss_pred HHhhhhcCEEEEeCCCCCcccccCCC--CCCCCCCeEEEEcC
Q psy14417 19 THALQNADLVLLLGARLNWMLHFGRA--PRFKSNVKIIQVDL 58 (120)
Q Consensus 19 ~~~l~~aDlil~iG~~~~~~~~~~~~--~~~~~~~~vi~Id~ 58 (120)
...|.+||+||++....+. .++.- .....+.+|+-+-.
T Consensus 63 ~~~i~~aD~vvA~l~~~d~--Gt~~EiG~A~algkPV~~l~~ 102 (152)
T 4fyk_A 63 LNWLQQADVVVAEVTQPSL--GVGYELGRAVALGKPILCLFR 102 (152)
T ss_dssp HHHHHHCSEEEEECSSCCH--HHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHCCEEEEeCCCCCC--CHHHHHHHHHHcCCeEEEEEe
Confidence 4678999999999875542 22200 01223567776543
No 72
>3v2d_4 50S ribosomal protein L31; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_3 2hgj_3 2hgu_3 2j03_4 2v47_4 2v49_4 2wdi_4 2wdj_4 2wdl_4 2wdn_4 2wh2_4 2wrj_4 2wrl_4 2wro_4 2wrr_4 2x9s_4 2x9u_4 2xg0_4 2xg2_4 2xqe_4 ...
Probab=31.53 E-value=21 Score=19.77 Aligned_cols=12 Identities=25% Similarity=0.418 Sum_probs=9.3
Q ss_pred CCCCCCccccCh
Q psy14417 5 VVPDAHPNCVSA 16 (120)
Q Consensus 5 ~~~~~hp~~~G~ 16 (120)
+-+..||+|.|-
T Consensus 35 i~S~~HPFyTGk 46 (71)
T 3v2d_4 35 VCSKCHPFYTGQ 46 (71)
T ss_dssp CCTTTSSSSSCC
T ss_pred ecCCCCCCCCCC
Confidence 456789999983
No 73
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=31.22 E-value=45 Score=23.08 Aligned_cols=21 Identities=38% Similarity=0.444 Sum_probs=16.9
Q ss_pred HHHHhhhhcCEEEEeCCCCCc
Q psy14417 17 ARTHALQNADLVLLLGARLNW 37 (120)
Q Consensus 17 ~~~~~l~~aDlil~iG~~~~~ 37 (120)
.-...+.+||+||..|..+..
T Consensus 48 ~d~~~l~~Adlvv~nG~~lE~ 68 (282)
T 3mfq_A 48 SDLSKLQKADLVLYHGLHFEG 68 (282)
T ss_dssp HHHHHHHHCSEEEECCTTSSS
T ss_pred HHHHHHHcCCEEEEcCcchHH
Confidence 345778999999999987753
No 74
>1vs6_Z 50S ribosomal protein L31; ribosome, kasugamycin; 3.46A {Escherichia coli} SCOP: d.325.1.2 PDB: 1vs8_Z 2aw4_Z 2awb_Z 2j28_Z 2rdo_Z 2vhm_Z 2vhn_Z 3bbx_Z 3e1b_S 3e1d_S 3iyx_A 3iyy_A 3izt_b* 3izu_b* 3j0t_2* 3j0w_2* 3j0y_2* 3j11_2* 3j12_2* 3j14_2*
Probab=31.04 E-value=21 Score=19.74 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=9.2
Q ss_pred CCCCCCccccCh
Q psy14417 5 VVPDAHPNCVSA 16 (120)
Q Consensus 5 ~~~~~hp~~~G~ 16 (120)
+-+..||+|.|-
T Consensus 36 i~s~~HPFyTG~ 47 (70)
T 1vs6_Z 36 VCSKCHPFFTGK 47 (70)
T ss_dssp CCSSSCCBCCCC
T ss_pred ecCCCCccCcCc
Confidence 446789999993
No 75
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=30.91 E-value=41 Score=23.21 Aligned_cols=20 Identities=40% Similarity=0.584 Sum_probs=16.5
Q ss_pred HHHhhhhcCEEEEeCCCCCc
Q psy14417 18 RTHALQNADLVLLLGARLNW 37 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~ 37 (120)
-...+.+||+||..|..+..
T Consensus 42 d~~~l~~Adlvv~~G~~~E~ 61 (284)
T 2prs_A 42 DVKRLQNADLVVWVGPEMEA 61 (284)
T ss_dssp HHHHHHHCSEEEECCTTTCG
T ss_pred HHHHHHcCCEEEEcCCCcHH
Confidence 45678999999999987753
No 76
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=30.88 E-value=47 Score=23.41 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=17.1
Q ss_pred HHHHhhhhcCEEEEeCCCCCc
Q psy14417 17 ARTHALQNADLVLLLGARLNW 37 (120)
Q Consensus 17 ~~~~~l~~aDlil~iG~~~~~ 37 (120)
.-...|.+||+||..|..+..
T Consensus 73 ~d~~~l~~ADlvv~nG~~lE~ 93 (307)
T 3ujp_A 73 SDIVKAQDADLILYNGMNLER 93 (307)
T ss_dssp HHHHHHHHCSEEEECCTTSST
T ss_pred HHHHHHhcCCEEEEcCCChHH
Confidence 345788999999999987753
No 77
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=30.83 E-value=44 Score=23.06 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=16.4
Q ss_pred HHHHhhhhcCEEEEeCCCCC
Q psy14417 17 ARTHALQNADLVLLLGARLN 36 (120)
Q Consensus 17 ~~~~~l~~aDlil~iG~~~~ 36 (120)
.-...+.+||+||..|..+.
T Consensus 51 ~d~~~l~~Adlvv~~G~~lE 70 (284)
T 3cx3_A 51 NDIAAIYDADVFVYHSHTLE 70 (284)
T ss_dssp HHHHHHHHSSEEEESCTTTS
T ss_pred HHHHHHHhCCEEEEcCCCcH
Confidence 34567899999999998775
No 78
>2npn_A Putative cobalamin synthesis related protein; COBF, PSI-2, MAD, struc genomics, SAM, S-adenosylmethionine, MCSG; HET: MSE SAM; 1.60A {Corynebacterium diphtheriae}
Probab=30.79 E-value=40 Score=22.70 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=18.9
Q ss_pred CCccccChHHHHhhhhcCEEEEeCCC
Q psy14417 9 AHPNCVSAARTHALQNADLVLLLGAR 34 (120)
Q Consensus 9 ~hp~~~G~~~~~~l~~aDlil~iG~~ 34 (120)
.+|-.+...+.++|++||+|+.-+++
T Consensus 13 Gd~~lLTl~A~~~L~~Advv~~~~~~ 38 (251)
T 2npn_A 13 GSPEFLTLQAISGLRHAQAIVALDKG 38 (251)
T ss_dssp SCGGGCCHHHHHHHHHCSEEEEEC--
T ss_pred CChhHhhHHHHHHHHhCCEEEEeCCC
Confidence 44555666788999999999987653
No 79
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=30.26 E-value=45 Score=23.17 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=16.1
Q ss_pred HHHhhhhcCEEEEeCCCCC
Q psy14417 18 RTHALQNADLVLLLGARLN 36 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~ 36 (120)
-...|.+||+||..|..+.
T Consensus 45 d~~~l~~Adlvv~~G~~lE 63 (291)
T 1pq4_A 45 QLAALSEAEAYVLIGLGFE 63 (291)
T ss_dssp HHHHGGGCSEEEECCTTTT
T ss_pred HHHHHHcCCEEEEeCCcch
Confidence 4567999999999998775
No 80
>1nkw_Y 50S ribosomal protein L31; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_Y* 1nwy_Y* 1pnu_Y 1pny_Y 1sm1_Y* 1vor_1 1vou_1 1vow_1 1voy_1 1vp0_1 1xbp_Y* 1yl3_4 2b66_4 2b9n_4 2b9p_4
Probab=29.51 E-value=18 Score=20.13 Aligned_cols=11 Identities=27% Similarity=0.344 Sum_probs=8.6
Q ss_pred CCCCCCccccC
Q psy14417 5 VVPDAHPNCVS 15 (120)
Q Consensus 5 ~~~~~hp~~~G 15 (120)
+-+..||+|.|
T Consensus 35 i~s~~HPFyTG 45 (73)
T 1nkw_Y 35 VWSGVHPFWTG 45 (73)
T ss_pred ECCCCCcCCcC
Confidence 34678999998
No 81
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.49A {Clostridium difficile}
Probab=29.10 E-value=45 Score=22.58 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=19.5
Q ss_pred CCccccChHHHHhhhhcCEEEEeCCCC
Q psy14417 9 AHPNCVSAARTHALQNADLVLLLGARL 35 (120)
Q Consensus 9 ~hp~~~G~~~~~~l~~aDlil~iG~~~ 35 (120)
++|-.+...+.++|++||+|+.-+...
T Consensus 15 G~~~~lT~~A~~~L~~advv~~~~~~~ 41 (253)
T 4e16_A 15 GDKELITLKGYKLLSNADVVIYAGSLV 41 (253)
T ss_dssp SCGGGSCHHHHHHHHHCSEEEECTTTS
T ss_pred CCHHHHHHHHHHHHHhCCEEEEeCCCC
Confidence 345555557889999999999865543
No 82
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S-adenosylmethi transferase; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A*
Probab=29.04 E-value=44 Score=22.60 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=17.4
Q ss_pred CCccccChHHHHhhhhcCEEEEe
Q psy14417 9 AHPNCVSAARTHALQNADLVLLL 31 (120)
Q Consensus 9 ~hp~~~G~~~~~~l~~aDlil~i 31 (120)
.+|-.+-..+.++|++||+|+.-
T Consensus 15 G~~~~LT~~A~~~L~~advV~~~ 37 (259)
T 2e0n_A 15 GDPGLITVKALSQLREADVIYYP 37 (259)
T ss_dssp SCGGGSBHHHHHHHHHCSEEEEE
T ss_pred CChHHHHHHHHHHHHhCCEEEEe
Confidence 34545555788999999999875
No 83
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=27.87 E-value=53 Score=23.12 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=16.4
Q ss_pred HHHhhhhcCEEEEeCCCCCc
Q psy14417 18 RTHALQNADLVLLLGARLNW 37 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~ 37 (120)
-...+.+||+||..|..+..
T Consensus 64 d~~~l~~ADlvv~~G~~lE~ 83 (312)
T 2o1e_A 64 DIANIQDADLFVYNSEYMET 83 (312)
T ss_dssp HHHHHHHSSEEEESCTTTST
T ss_pred HHHHHhcCCEEEEcCCChHh
Confidence 45678999999999987753
No 84
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=27.79 E-value=54 Score=23.20 Aligned_cols=20 Identities=35% Similarity=0.420 Sum_probs=16.4
Q ss_pred HHHhhhhcCEEEEeCCCCCc
Q psy14417 18 RTHALQNADLVLLLGARLNW 37 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~~ 37 (120)
-...+.+||+||..|..+..
T Consensus 88 d~~~l~~ADlvv~nG~~lE~ 107 (321)
T 1xvl_A 88 DIVKAQDADLILYNGMNLER 107 (321)
T ss_dssp HHHHHHTCSEEEECCTTSST
T ss_pred HHHHHhcCCEEEECCCChHH
Confidence 45678999999999987753
No 85
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=26.83 E-value=40 Score=22.23 Aligned_cols=25 Identities=4% Similarity=0.118 Sum_probs=18.2
Q ss_pred CCccccChHHHHhhhhcCEEEEeCC
Q psy14417 9 AHPNCVSAARTHALQNADLVLLLGA 33 (120)
Q Consensus 9 ~hp~~~G~~~~~~l~~aDlil~iG~ 33 (120)
.+|-.+-..+.++|++||+|+.-..
T Consensus 13 G~~~~lT~~A~~~L~~advv~~~~~ 37 (232)
T 2qbu_A 13 GDSELLTLRAVNVLRSVPVICAPRS 37 (232)
T ss_dssp SCGGGSBHHHHHHHHHCSEEECCBC
T ss_pred CChHHHHHHHHHHHHhCCEEEEeCC
Confidence 3444555578899999999987544
No 86
>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: c.90.1.1
Probab=26.73 E-value=50 Score=21.88 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=16.4
Q ss_pred CccccChHHHHhhhhcCEEEE
Q psy14417 10 HPNCVSAARTHALQNADLVLL 30 (120)
Q Consensus 10 hp~~~G~~~~~~l~~aDlil~ 30 (120)
.|-.+...+.++|++||+|+.
T Consensus 14 ~~~~LT~~A~~~L~~advv~~ 34 (235)
T 1ve2_A 14 GPEHLTLKALRVLEVAEVVLH 34 (235)
T ss_dssp SGGGSBHHHHHHHHHCSEEEE
T ss_pred CHHHHHHHHHHHHHhCCEEEE
Confidence 444555578899999999997
No 87
>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE; 1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Probab=26.52 E-value=50 Score=22.51 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=12.6
Q ss_pred hHHHHhhhhcCEEEE
Q psy14417 16 AARTHALQNADLVLL 30 (120)
Q Consensus 16 ~~~~~~l~~aDlil~ 30 (120)
..+.++|++||+|+.
T Consensus 30 lrA~~~L~~ADvI~~ 44 (268)
T 1vhv_A 30 VKGLEAVREADEVYV 44 (268)
T ss_dssp HHHHHHHHHCSEEEE
T ss_pred HHHHHHHhcCCEEEE
Confidence 357899999999985
No 88
>3nut_A Precorrin-3 methylase; vitamin B12 pathway, cobalamin, methyltransferase, transfera; HET: SAH; 2.22A {Rhodobacter capsulatus}
Probab=26.47 E-value=50 Score=22.28 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=17.3
Q ss_pred ccccChHHHHhhhhcCEEEEeCCC
Q psy14417 11 PNCVSAARTHALQNADLVLLLGAR 34 (120)
Q Consensus 11 p~~~G~~~~~~l~~aDlil~iG~~ 34 (120)
|-.+...+.++|++||+|++-...
T Consensus 21 ~~lLT~rA~~~L~~AdvI~g~d~~ 44 (251)
T 3nut_A 21 EDLVTPEVTAALAEATDIVGYIPY 44 (251)
T ss_dssp GGGSCHHHHHHHHHCSEEEECGGG
T ss_pred HHHHHHHHHHHHHhCCEEEEcCcc
Confidence 333444688999999999976543
No 89
>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.97A {Thermus thermophilus} SCOP: c.90.1.1 PDB: 1v9a_A
Probab=26.43 E-value=53 Score=21.85 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=17.1
Q ss_pred CCccccChHHHHhhhhcCEEEE
Q psy14417 9 AHPNCVSAARTHALQNADLVLL 30 (120)
Q Consensus 9 ~hp~~~G~~~~~~l~~aDlil~ 30 (120)
.+|-.+-..+.++|++||+|+.
T Consensus 11 G~~~~LT~~A~~~L~~advI~~ 32 (239)
T 1va0_A 11 GDPELLTLKAYRLLKEAPVVLY 32 (239)
T ss_dssp SCGGGSBHHHHHHHHHCSEEEE
T ss_pred CCHHHHHHHHHHHHHhCCEEEE
Confidence 3455555678899999999997
No 90
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=26.21 E-value=60 Score=22.84 Aligned_cols=19 Identities=42% Similarity=0.517 Sum_probs=15.9
Q ss_pred HHHhhhhcCEEEEeCCCCC
Q psy14417 18 RTHALQNADLVLLLGARLN 36 (120)
Q Consensus 18 ~~~~l~~aDlil~iG~~~~ 36 (120)
-...+.+||+||..|..+.
T Consensus 81 d~~~l~~ADlvv~~G~~lE 99 (313)
T 1toa_A 81 DVEWLGNADLILYNGLHLE 99 (313)
T ss_dssp HHHHHHHCSEEEECCTTCS
T ss_pred HHHHHHcCCEEEEcCCCcH
Confidence 4567899999999998765
No 91
>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine, transferase; HET: SAH MES; 1.50A {Pyrococcus horikoshii} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ...
Probab=24.18 E-value=59 Score=22.01 Aligned_cols=25 Identities=8% Similarity=-0.041 Sum_probs=18.3
Q ss_pred CCccccChHHHHhhhhcCEEEEeCC
Q psy14417 9 AHPNCVSAARTHALQNADLVLLLGA 33 (120)
Q Consensus 9 ~hp~~~G~~~~~~l~~aDlil~iG~ 33 (120)
.+|-.+...+.++|++||+|++=+.
T Consensus 11 G~~~~LT~~A~~~L~~advv~~~~~ 35 (265)
T 2z6r_A 11 YDERDITVKGLEIAKKCDYVFAEFY 35 (265)
T ss_dssp SSGGGSBHHHHHHHHHCSEEEEECS
T ss_pred CChHhcCHHHHHHHHhCCEEEEecc
Confidence 3455555578899999999996543
No 92
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1
Probab=23.60 E-value=65 Score=22.15 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=14.2
Q ss_pred ccChHHHHhhhhcCEEEE
Q psy14417 13 CVSAARTHALQNADLVLL 30 (120)
Q Consensus 13 ~~G~~~~~~l~~aDlil~ 30 (120)
.+-..+.++|++||+|+.
T Consensus 29 lLTl~A~~~L~~ADvV~~ 46 (280)
T 1s4d_A 29 LLTLHAANALRQADVIVH 46 (280)
T ss_dssp SSBHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHhCCEEEE
Confidence 333467899999999997
No 93
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase, cobalamin biosynth methyltransferase; HET: SAH; 2.40A {Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A*
Probab=23.55 E-value=64 Score=22.20 Aligned_cols=19 Identities=32% Similarity=0.352 Sum_probs=14.8
Q ss_pred HHHHhhhhcCEEEEeCCCC
Q psy14417 17 ARTHALQNADLVLLLGARL 35 (120)
Q Consensus 17 ~~~~~l~~aDlil~iG~~~ 35 (120)
.+.++|++||+|+.-+...
T Consensus 39 ~A~~~L~~AdvV~~~~~~~ 57 (285)
T 1cbf_A 39 KGLKLLQQADVVLYADSLV 57 (285)
T ss_dssp HHHHHHHHCSEEEECTTTS
T ss_pred HHHHHHHhCCEEEEeCCCC
Confidence 5789999999999755443
No 94
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, STRU genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367}
Probab=23.41 E-value=64 Score=22.60 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=15.9
Q ss_pred ccChHHHHhhhhcCEEEEeCC
Q psy14417 13 CVSAARTHALQNADLVLLLGA 33 (120)
Q Consensus 13 ~~G~~~~~~l~~aDlil~iG~ 33 (120)
.+...+.++|++||+|++=++
T Consensus 30 ~lT~rA~~~L~~aDvI~~edt 50 (296)
T 3kwp_A 30 DMTFRAVKTLTAVDLIAAEDT 50 (296)
T ss_dssp GCCHHHHHHHHHSSEEEESCH
T ss_pred chhhHHHHHHhHhhhhhhhcc
Confidence 333467899999999998554
No 95
>1wde_A Probable diphthine synthase; structural genomics, conserved hypothetical protein, riken S genomics/proteomics initiative, RSGI, transferase; 2.00A {Aeropyrum pernix} SCOP: c.90.1.1
Probab=22.02 E-value=68 Score=22.20 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=18.0
Q ss_pred CCccccChHHHHhhhhcCEEEEe
Q psy14417 9 AHPNCVSAARTHALQNADLVLLL 31 (120)
Q Consensus 9 ~hp~~~G~~~~~~l~~aDlil~i 31 (120)
.+|-.+...+.++|++||+|+.=
T Consensus 17 Gd~~lLTl~A~~~L~~ADvV~~~ 39 (294)
T 1wde_A 17 YAPGMQTLEALDAVRRADVVYVE 39 (294)
T ss_dssp SSTTCCCHHHHHHHHHCSEEEEE
T ss_pred CChHHhhHHHHHHHHhCCEEEEe
Confidence 44555666788999999999974
No 96
>3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic parasitic protozoan, structural genomics, decode, UW, SBRI; 2.49A {Entamoeba histolytica}
Probab=22.02 E-value=70 Score=22.41 Aligned_cols=15 Identities=33% Similarity=0.507 Sum_probs=12.8
Q ss_pred hHHHHhhhhcCEEEE
Q psy14417 16 AARTHALQNADLVLL 30 (120)
Q Consensus 16 ~~~~~~l~~aDlil~ 30 (120)
..+.++|++||+|++
T Consensus 38 ~rA~~~L~~ADvV~~ 52 (292)
T 3i4t_A 38 VRGLEAVKSCDLVFL 52 (292)
T ss_dssp HHHHHHHHHCSEEEE
T ss_pred HHHHHHHHhCCEEEE
Confidence 357899999999995
No 97
>3nd1_A Precorrin-6A synthase/COBF protein; methyltransferase, deacetylase, transferase; HET: SAH; 1.50A {Rhodobacter capsulatus}
Probab=21.93 E-value=89 Score=21.61 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=15.8
Q ss_pred HHHHhhhhcCEEEEeCCCC
Q psy14417 17 ARTHALQNADLVLLLGARL 35 (120)
Q Consensus 17 ~~~~~l~~aDlil~iG~~~ 35 (120)
-+.++|++||+|++-.++.
T Consensus 40 rA~~~L~~aDvI~~~~t~~ 58 (275)
T 3nd1_A 40 QAVDAMNAADLILIPLKGA 58 (275)
T ss_dssp HHHHHHHHCSEEEEECCCS
T ss_pred HHHHHHHhCCEEEecCCcc
Confidence 5789999999999987643
No 98
>1wyz_A Putative S-adenosylmethionine-dependent methyltra; northeast structural genomics consortium, BTR28, methyltrans PSI; 2.50A {Bacteroides thetaiotaomicron} SCOP: c.90.1.1
Probab=20.44 E-value=72 Score=21.34 Aligned_cols=20 Identities=5% Similarity=0.122 Sum_probs=16.4
Q ss_pred ccChHHHHhhhhcCEEEEeC
Q psy14417 13 CVSAARTHALQNADLVLLLG 32 (120)
Q Consensus 13 ~~G~~~~~~l~~aDlil~iG 32 (120)
++...+.++|++||+|++-.
T Consensus 20 LlTlrA~~~L~~aDvI~~~~ 39 (242)
T 1wyz_A 20 VLPSYNTEIIRGIRHFIVED 39 (242)
T ss_dssp HSCTHHHHHHTTCCEEEESC
T ss_pred ccCHHHHHHHHhCCEEEEeC
Confidence 46667889999999998843
No 99
>2bb3_A Cobalamin biosynthesis precorrin-6Y methylase (CB; beta, alpha-beta-alpha sandwich, structural genomics, PSI, P structure initiative; HET: SAH; 2.27A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Probab=20.25 E-value=82 Score=20.77 Aligned_cols=18 Identities=6% Similarity=0.150 Sum_probs=14.1
Q ss_pred ccChHHHHhhhhcCEEEE
Q psy14417 13 CVSAARTHALQNADLVLL 30 (120)
Q Consensus 13 ~~G~~~~~~l~~aDlil~ 30 (120)
.+-..+.++|++||+|+.
T Consensus 35 lLTlrA~~~L~~AdvI~~ 52 (221)
T 2bb3_A 35 QTTERAKEIIERAEVIYG 52 (221)
T ss_dssp CCCHHHHHHHHHCSEEEE
T ss_pred HhHHHHHHHHHhCCEEEE
Confidence 333467899999999887
No 100
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=20.15 E-value=70 Score=20.60 Aligned_cols=15 Identities=40% Similarity=0.481 Sum_probs=12.1
Q ss_pred HHhhhhcCEEEEeCC
Q psy14417 19 THALQNADLVLLLGA 33 (120)
Q Consensus 19 ~~~l~~aDlil~iG~ 33 (120)
.++++++|+||.-|.
T Consensus 57 ~~a~~~~DlVittGG 71 (172)
T 3kbq_A 57 RVALEVSDLVVSSGG 71 (172)
T ss_dssp HHHHHHCSEEEEESC
T ss_pred HHHHhcCCEEEEcCC
Confidence 456678999999984
Done!