RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14417
(120 letters)
>gnl|CDD|236433 PRK09259, PRK09259, putative oxalyl-CoA decarboxylase; Validated.
Length = 569
Score = 111 bits (280), Expect = 6e-30
Identities = 42/114 (36%), Positives = 68/114 (59%), Gaps = 4/114 (3%)
Query: 1 MGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNA 60
M KG++PD HP +AAR+ AL NAD+VLL+GARLNW+L G+ + ++ K IQ+D+
Sbjct: 249 MAKGLLPDTHPQSAAAARSLALANADVVLLVGARLNWLLSHGKGKTWGADKKFIQIDIEP 308
Query: 61 EELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 114
+E+ ++ A + D+ +Q L L+ ++N F A + W L + + N
Sbjct: 309 QEIDSNRPIAAPVVGDIGSVMQAL---LAGLKQNT-FKAPAEWLDALAERKEKN 358
>gnl|CDD|215786 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central
domain. The central domain of TPP enzymes contains a
2-fold Rossman fold.
Length = 136
Score = 96.5 bits (241), Expect = 5e-27
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 1 MGKGVVPDAHPNCV-------SAARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKI 53
MGKG P+ HP + + A AL+ ADLVL +GAR + G P F + KI
Sbjct: 47 MGKGAFPEDHPLYLGMLGMHGTPAANEALEEADLVLAIGARFDD-RGTGSLPEFAPDAKI 105
Query: 54 IQVDLNAEELHNSVQAAVAIQSDVRLTVQQL 84
I +D++ E+ + V I D + ++ L
Sbjct: 106 IHIDIDPAEIGKNYPVDVPIVGDAKEALEAL 136
>gnl|CDD|132298 TIGR03254, oxalate_oxc, oxalyl-CoA decarboxylase. In a number of
bacteria, including Oxalobacter formigenes from the
human gut, a two-gene operon of oxc (oxalyl-CoA
decarboxylase) and frc (formyl-CoA transferase) encodes
a system for degrading and therefore detoxifying
oxalate. Members of this family are the thiamine
pyrophosphate (TPP)-containing enzyme oxalyl-CoA
decarboxylase [Cellular processes, Detoxification].
Length = 554
Score = 103 bits (258), Expect = 6e-27
Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 4/116 (3%)
Query: 1 MGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNA 60
M KG++PD HP +AAR+ AL AD+V+L+GARLNW+L G+ + + K IQVD+
Sbjct: 242 MAKGLLPDTHPQSAAAARSFALAEADVVMLVGARLNWLLSHGKGKLWGEDAKFIQVDIEP 301
Query: 61 EELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQ 116
E+ ++ A + D+ VQ +LS + + W +K K + N
Sbjct: 302 TEMDSNRPIAAPVVGDIGSVVQ---ALLSAAKNGG-VKPPADWRNAIKTKSEKNVA 353
>gnl|CDD|223107 COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes
[acetolactate synthase, pyruvate dehydrogenase
(cytochrome), glyoxylate carboligase, phosphonopyruvate
decarboxylase] [Amino acid transport and metabolism /
Coenzyme metabolism].
Length = 550
Score = 89.2 bits (222), Expect = 6e-22
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 1 MGKGVVPDAHPNCVSAARTH-------ALQNADLVLLLGARLNWMLHFGRAPRFKSNVKI 53
MGKG VP+ HP + H AL+ ADL+L +GAR + + F I
Sbjct: 236 MGKGAVPEDHPLSLGMLGMHGTKAANEALEEADLLLAVGARFDDRVTGYSG--FAPPAAI 293
Query: 54 IQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNW 95
I +D++ E+ + V I D + T++ L + L + W
Sbjct: 294 IHIDIDPAEIGKNYPVDVPIVGDAKATLEALLEELKPERAAW 335
>gnl|CDD|181257 PRK08155, PRK08155, acetolactate synthase catalytic subunit;
Validated.
Length = 564
Score = 66.3 bits (162), Expect = 5e-14
Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 9/103 (8%)
Query: 1 MGKGVVPDAHPNCVS-----AART--HALQNADLVLLLGARLNWMLHFGRAPRFKSNVKI 53
M G++P AHP + AR+ + LQ ADL+++LGAR + G+ +F N KI
Sbjct: 247 MALGMLPKAHPLSLGMLGMHGARSTNYILQEADLLIVLGARFD-DRAIGKTEQFCPNAKI 305
Query: 54 IQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQR-NW 95
I VD++ EL Q VAIQ+DV + QL ++ R W
Sbjct: 306 IHVDIDRAELGKIKQPHVAIQADVDDVLAQLLPLVEAQPRAEW 348
>gnl|CDD|236098 PRK07789, PRK07789, acetolactate synthase 1 catalytic subunit;
Validated.
Length = 612
Score = 60.0 bits (146), Expect = 9e-12
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 18/119 (15%)
Query: 1 MGKGVVPDAHPNCV-------SAARTHALQNADLVLLLGARLNWMLHF-----GRAPRFK 48
M +G PD+HP + + A ALQ +DL++ LGAR F G+ F
Sbjct: 267 MARGAFPDSHPQHLGMPGMHGTVAAVAALQRSDLLIALGAR------FDDRVTGKLDSFA 320
Query: 49 SNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQEL 107
+ K+I D++ E+ + A V I DV+ + +L L + WW L
Sbjct: 321 PDAKVIHADIDPAEIGKNRHADVPIVGDVKEVIAELIAALRAEHAAGGKPDLTAWWAYL 379
>gnl|CDD|232833 TIGR00118, acolac_lg, acetolactate synthase, large subunit,
biosynthetic type. Two groups of proteins form
acetolactate from two molecules of pyruvate. The type of
acetolactate synthase described in this model also
catalyzes the formation of acetohydroxybutyrate from
pyruvate and 2-oxobutyrate, an early step in the
branched chain amino acid biosynthesis; it is therefore
also termed acetohydroxyacid synthase. In bacteria, this
catalytic chain is associated with a smaller regulatory
chain in an alpha2/beta2 heterotetramer. Acetolactate
synthase is a thiamine pyrophosphate enzyme. In this
type, FAD and Mg++ are also found. Several isozymes of
this enzyme are found in E. coli K12, one of which
contains a frameshift in the large subunit gene and is
not expressed [Amino acid biosynthesis, Pyruvate
family].
Length = 558
Score = 57.0 bits (138), Expect = 9e-11
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 1 MGKGVVPDAHPNCVSAARTH-------ALQNADLVLLLGARLNWMLHFGRAPRFKSNVKI 53
MG G P+ HP + H A+ DL++ +GAR + + G +F N KI
Sbjct: 237 MGLGSFPEDHPLSLGMLGMHGTKTANLAVHECDLIIAVGARFDDRVT-GNLAKFAPNAKI 295
Query: 54 IQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQEL 107
I +D++ E+ +V+ + I D R +++L + L S W +++
Sbjct: 296 IHIDIDPAEIGKNVRVDIPIVGDARNVLEELLKKL----FELKERKESAWLEQI 345
>gnl|CDD|180368 PRK06048, PRK06048, acetolactate synthase 3 catalytic subunit;
Reviewed.
Length = 561
Score = 55.6 bits (134), Expect = 3e-10
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 1 MGKGVVPDAHPNCVSAARTH-------ALQNADLVLLLGARLNWMLHFGRAPRFKSNVKI 53
MG G +P HP + H A+Q +DL++ +GAR + + G+ F N KI
Sbjct: 243 MGIGAIPTEHPLSLGMLGMHGTKYANYAIQESDLIIAVGARFDDRVT-GKLASFAPNAKI 301
Query: 54 IQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLK 110
I +D++ E+ +V+ V I D + ++ L + + + R + W +E LK
Sbjct: 302 IHIDIDPAEISKNVKVDVPIVGDAKQVLKSLIKYVQYCDRKEWLDKINQWKKEYPLK 358
>gnl|CDD|235629 PRK05858, PRK05858, hypothetical protein; Provisional.
Length = 542
Score = 54.3 bits (131), Expect = 9e-10
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 1 MGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNA 60
MG+GVVP HP S AR AL AD+VL++G +++ L FG F +++ VD
Sbjct: 239 MGRGVVPADHPLAFSRARGKALGEADVVLVVGVPMDFRLGFG---VFGGTAQLVHVDDAP 295
Query: 61 EELHNSVQAAVAIQSDVRLTVQQL 84
+ + A + D+ + L
Sbjct: 296 PQRAHHRPVAAGLYGDLSAILSAL 319
>gnl|CDD|181337 PRK08266, PRK08266, hypothetical protein; Provisional.
Length = 542
Score = 51.9 bits (125), Expect = 6e-09
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 13/114 (11%)
Query: 2 GKGVVPDAHP---NCVSAARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDL 58
G+G+V D HP N +A D+V+ +G+RL L R P +K+I++D+
Sbjct: 240 GRGIVSDRHPLGLNFAAAYEL--WPQTDVVIGIGSRL--ELPTFRWPWRPDGLKVIRIDI 295
Query: 59 NAEELHNSVQAAVAIQSDVRLTVQQLKQMLS-----HTQRNWSFSATSPWWQEL 107
+ E ++ VAI +D + L LS R ++
Sbjct: 296 DPTE-MRRLKPDVAIVADAKAGTAALLDALSKAGSKRPSRRAELRELKAAARQR 348
>gnl|CDD|215261 PLN02470, PLN02470, acetolactate synthase.
Length = 585
Score = 50.5 bits (121), Expect = 2e-08
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 12/115 (10%)
Query: 1 MGKGVVPDAHPNCVSAARTH-------ALQNADLVLLLGARLNWMLHFGRAPRFKSNVKI 53
MG G P + + H A+ +ADL+L G R + + G+ F S I
Sbjct: 249 MGLGAFPASDELSLQMLGMHGTVYANYAVDSADLLLAFGVRFDDRVT-GKLEAFASRASI 307
Query: 54 IQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQML-SHTQRNWSFSATSPWWQEL 107
+ +D++ E+ + Q V++ +DV+L +Q L ++L + FSA W EL
Sbjct: 308 VHIDIDPAEIGKNKQPHVSVCADVKLALQGLNKLLEERKAKRPDFSA---WRAEL 359
>gnl|CDD|214363 CHL00099, ilvB, acetohydroxyacid synthase large subunit.
Length = 585
Score = 50.1 bits (120), Expect = 3e-08
Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 1 MGKGVVPDAHPNCV-------SAARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKI 53
MGKG+ + HP C+ +A A+ DL++ LGAR + + G+ F N ++
Sbjct: 253 MGKGIFDEDHPLCLGMLGMHGTAYANFAVSECDLLIALGARFDDRVT-GKLDEFACNAQV 311
Query: 54 IQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELK 108
I +D++ E+ + VAI DV+ +Q+L ++L ++ T W + +
Sbjct: 312 IHIDIDPAEIGKNRIPQVAIVGDVKKVLQELLELLKNSPNLLESEQTQAWRERIN 366
>gnl|CDD|181502 PRK08611, PRK08611, pyruvate oxidase; Provisional.
Length = 576
Score = 50.0 bits (120), Expect = 3e-08
Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 27/123 (21%)
Query: 2 GKGVVPDAHPNCV-------SAARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKII 54
KG++PD HP + + A+Q ADL++++G ++ K I
Sbjct: 238 AKGIIPDDHPYSLGNLGKIGTKPAYEAMQEADLLIMVGT------NYPYVDYLPKKAKAI 291
Query: 55 QVDLNAEELHNSVQAAVAIQSDVRLTVQQL---------KQMLSHTQRNWSFSATSPWWQ 105
Q+D + + V + D + + QL ++ L Q N + WW+
Sbjct: 292 QIDTDPANIGKRYPVNVGLVGDAKKALHQLTENIKHVEDRRFLEACQEN-----MAKWWK 346
Query: 106 ELK 108
++
Sbjct: 347 WME 349
>gnl|CDD|236042 PRK07525, PRK07525, sulfoacetaldehyde acetyltransferase; Validated.
Length = 588
Score = 49.2 bits (118), Expect = 6e-08
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 15/95 (15%)
Query: 7 PDAHP-------NCVSAARTHALQNADLVLLLGARLNWMLHFGRAPR-----FKSNVKII 54
P +HP S A + AD+VL LG RLN FG P+ + + KII
Sbjct: 242 PGSHPLWVGPLGYNGSKAAMELIAKADVVLALGTRLN---PFGTLPQYGIDYWPKDAKII 298
Query: 55 QVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 89
QVD+N + + + + +V I D + ++L L+
Sbjct: 299 QVDINPDRIGLTKKVSVGICGDAKAVARELLARLA 333
>gnl|CDD|132497 TIGR03457, sulphoacet_xsc, sulfoacetaldehyde acetyltransferase.
Members of this protein family are sulfoacetaldehyde
acetyltransferase, an enzyme of taurine utilization.
Taurine, or 2-aminoethanesulfonate, can be used by
bacteria as a source of carbon, nitrogen, and sulfur
[Central intermediary metabolism, Other].
Length = 579
Score = 48.7 bits (116), Expect = 8e-08
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 16/106 (15%)
Query: 15 SAARTHALQNADLVLLLGARLNWMLHFGRAPR-----FKSNVKIIQVDLNAEELHNSVQA 69
S A + +AD+VL LG RL FG P+ + N KIIQVD NA+ + +
Sbjct: 253 SKAAMKLISDADVVLALGTRLG---PFGTLPQYGIDYWPKNAKIIQVDANAKMIGLVKKV 309
Query: 70 AVAIQSDVRLTVQQLKQML-------SHTQRNWSFSAT-SPWWQEL 107
V I D + ++ Q L + +R A S W QEL
Sbjct: 310 TVGICGDAKAAAAEILQRLAGKAGDANRAERKAKIQAERSAWEQEL 355
>gnl|CDD|180780 PRK06965, PRK06965, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 587
Score = 48.3 bits (115), Expect = 1e-07
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 17/120 (14%)
Query: 1 MGKGVVPDAHPNCVSAARTH-------ALQNADLVLLLGARLNWML-----HFGRAPRFK 48
MG G P + + H A+Q+ D+++ +GAR + + HF PR
Sbjct: 257 MGLGAYPASDKKFLGMLGMHGTYEANMAMQHCDVLIAIGARFDDRVIGNPAHFASRPR-- 314
Query: 49 SNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELK 108
KII +D++ + V+ + I DV+ +++L + L + A + WW++++
Sbjct: 315 ---KIIHIDIDPSSISKRVKVDIPIVGDVKEVLKELIEQLQTAEHGPDADALAQWWKQIE 371
>gnl|CDD|235766 PRK06276, PRK06276, acetolactate synthase catalytic subunit;
Reviewed.
Length = 586
Score = 46.3 bits (110), Expect = 6e-07
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 1 MGKGVVPDAHPNCVSAARTH-------ALQNADLVLLLGARLNWMLHFGRAPRFKSNVKI 53
MGKG P+ HP + H ++ +D+++ +G R + G F N KI
Sbjct: 239 MGKGAFPEDHPLALGMVGMHGTKAANYSVTESDVLIAIGCRFSDRTT-GDISSFAPNAKI 297
Query: 54 IQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWW---QELKLK 110
I +D++ E+ +V+ V I D + L+ +L+ + S W ++LK +
Sbjct: 298 IHIDIDPAEIGKNVRVDVPIVGDAKNV---LRDLLAELMKK-EIKNKSEWLERVKKLKKE 353
Query: 111 C 111
Sbjct: 354 S 354
>gnl|CDD|181661 PRK09124, PRK09124, pyruvate dehydrogenase; Provisional.
Length = 574
Score = 45.4 bits (108), Expect = 1e-06
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 20 HALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRL 79
HA+ N D +L+LG F + ++ KIIQ+D+N L + + DV+
Sbjct: 261 HAMMNCDTLLMLGTD------FPYRQFYPTDAKIIQIDINPGSLGRRSPVDLGLVGDVKA 314
Query: 80 TVQQLKQMLS-HTQR 93
T+ L +L T R
Sbjct: 315 TLAALLPLLEEKTDR 329
>gnl|CDD|236041 PRK07524, PRK07524, hypothetical protein; Provisional.
Length = 535
Score = 45.4 bits (108), Expect = 1e-06
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 2 GKGVVPDAHPNCVSA----ARTHAL-QNADLVLLLGARL---NWMLHFGRAPRFKSNVKI 53
KG++P HP + A AL AD+VL +G L ++ ++F F ++
Sbjct: 236 AKGLLPAGHPLLLGASQSLPAVRALIAEADVVLAVGTELGETDYDVYF--DGGFPLPGEL 293
Query: 54 IQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRN 94
I++D++ ++L + A+A+ D R ++ L L
Sbjct: 294 IRIDIDPDQLARNYPPALALVGDARAALEALLARLPGQAAA 334
>gnl|CDD|181185 PRK07979, PRK07979, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 44.8 bits (106), Expect = 2e-06
Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 1 MGKGVVPDAHPNCVSAARTH-------ALQNADLVLLLGARLNWMLHFGRAPRFKSNVKI 53
MG G P H + H + NAD++ +G R + A ++ N +
Sbjct: 242 MGLGAFPATHRQSLGMLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLA-KYCPNATV 300
Query: 54 IQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELK 108
+ +D++ + +V A + I D R ++Q+ ++LS + WWQ+++
Sbjct: 301 LHIDIDPTSISKTVTADIPIVGDARQVLEQMLELLSQESAHQPLDEIRDWWQQIE 355
>gnl|CDD|180672 PRK06725, PRK06725, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 570
Score = 44.2 bits (104), Expect = 3e-06
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%)
Query: 1 MGKGVVPDAHPNCVSAARTH-------ALQNADLVLLLGARLNWMLHFGRAPRFKSNVKI 53
MG G P P + H A+ DL+L LG R + + G+ F + K
Sbjct: 250 MGLGAYPPGDPLFLGMLGMHGTYAANMAVTECDLLLALGVRFDDRVT-GKLELFSPHSKK 308
Query: 54 IQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKL 109
+ +D++ E H +V + DV+ + L M HTQ + W +E L
Sbjct: 309 VHIDIDPSEFHKNVAVEYPVVGDVKKALHMLLHMSIHTQTDEWLQKVKTWKEEYPL 364
>gnl|CDD|180820 PRK07064, PRK07064, hypothetical protein; Provisional.
Length = 544
Score = 43.8 bits (104), Expect = 4e-06
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 2 GKGVVPDAHPNCVSAARTHA-----LQNADLVLLLGARL--NWMLHFG-RAPRFKSNVKI 53
G+GVVP+ HP + A A + DL+L++G+RL N L + PR +
Sbjct: 237 GRGVVPEDHPASLGAFNNSAAVEALYKTCDLLLVVGSRLRGNETLKYSLALPR-----PL 291
Query: 54 IQVDLNAEELHNSVQAAVAIQSDVRLTVQQL 84
I+VD +A + + D + +L
Sbjct: 292 IRVDADAAADGRGYPNDLFVHGDAARVLARL 322
>gnl|CDD|236014 PRK07418, PRK07418, acetolactate synthase 3 catalytic subunit;
Reviewed.
Length = 616
Score = 43.9 bits (104), Expect = 5e-06
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 11/110 (10%)
Query: 1 MGKGVVPDAHPNCVSAARTH-------ALQNADLVLLLGARLNWMLHFGRAPRFKSNVKI 53
MGKG + HP V H A+ DL++ +GAR + + G+ F S K+
Sbjct: 260 MGKGAFDEHHPLSVGMLGMHGTAYANFAVTECDLLIAVGARFDDRVT-GKLDEFASRAKV 318
Query: 54 IQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPW 103
I +D++ E+ + + V I DVR L ++L + + T W
Sbjct: 319 IHIDIDPAEVGKNRRPDVPIVGDVRKV---LVKLLERSLEPTTPPRTQAW 365
>gnl|CDD|181601 PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit;
Reviewed.
Length = 548
Score = 42.9 bits (102), Expect = 7e-06
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 25/101 (24%)
Query: 21 ALQNADLVLLLGARLNWMLHF-----GRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQS 75
A+Q DL++ +GAR F G+ F + K+I +D++ E++ QA VA+Q
Sbjct: 259 AVQECDLLIAVGAR------FDDRVTGKLNTFAPHAKVIHLDIDPAEINKLRQAHVALQG 312
Query: 76 DVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQ 116
D+ + L+Q L+ W Q C R
Sbjct: 313 DLNALLPALQQPLN----------IDAWRQH----CAQLRA 339
>gnl|CDD|180570 PRK06457, PRK06457, pyruvate dehydrogenase; Provisional.
Length = 549
Score = 43.3 bits (102), Expect = 7e-06
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 13/83 (15%)
Query: 2 GKGVVPDAHPNCV-------SAARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKII 54
GKG++PD P + + A+ ADL+++LG ++ + + K+I
Sbjct: 230 GKGILPDLDPKVMGGIGLLGTKPSIEAMDKADLLIMLGTSFPYVNFLNK------SAKVI 283
Query: 55 QVDLNAEELHNSVQAAVAIQSDV 77
QVD++ + + ++ V
Sbjct: 284 QVDIDNSNIGKRLDVDLSYPIPV 306
>gnl|CDD|180578 PRK06466, PRK06466, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 42.8 bits (101), Expect = 1e-05
Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Query: 1 MGKGVVPDAHPNCVSAARTH-------ALQNADLVLLLGARLNWMLHFGRAPRFKSNVKI 53
MG G P + H A+ +AD++L +GAR + + G +F N KI
Sbjct: 242 MGLGGFPGTDRQFLGMLGMHGTYEANMAMHHADVILAVGARFDDRVTNG-PAKFCPNAKI 300
Query: 54 IQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQEL 107
I +D++ + +++A + I V + ++ +L A + WW+++
Sbjct: 301 IHIDIDPASISKTIKADIPIVGPVESVLTEMLAILKEIGEKPDKEALAAWWKQI 354
>gnl|CDD|236239 PRK08322, PRK08322, acetolactate synthase; Reviewed.
Length = 547
Score = 42.5 bits (101), Expect = 1e-05
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 22/115 (19%)
Query: 1 MGKGVVPDAHPNCVSAARTHALQ----------NADLVLLLGARLNWMLHFGRAPRF--- 47
MGKGV+P+ HP + A L +ADL++ +G + + P F
Sbjct: 232 MGKGVIPETHPLSLGTA---GLSQGDYVHCAIEHADLIINVGHDV-----IEKPPFFMNP 283
Query: 48 KSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSP 102
+ K+I ++ E+ V + D+ ++ QLK+ L+ Q +W F
Sbjct: 284 NGDKKVIHINFLPAEVDPVYFPQVEVVGDIANSLWQLKERLA-DQPHWDFPRFLK 337
>gnl|CDD|181458 PRK08527, PRK08527, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 563
Score = 42.4 bits (100), Expect = 1e-05
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 12/115 (10%)
Query: 1 MGKGVVPDAHPNCVSAARTH-------ALQNADLVLLLGARLNWMLHFGRAPRFKSNVKI 53
M +GV+ P + H A+ DL++ LGAR + + G+ F + KI
Sbjct: 239 MARGVLRSDDPLLLGMLGMHGSYAANMAMSECDLLISLGARFDDRVT-GKLSEFAKHAKI 297
Query: 54 IQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELK 108
I VD++ + V A I D++ ++++ + L + + W + LK
Sbjct: 298 IHVDIDPSSISKIVNADYPIVGDLKNVLKEMLEELK----EENPTTYKEWREILK 348
>gnl|CDD|236380 PRK09107, PRK09107, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 595
Score = 41.2 bits (97), Expect = 4e-05
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 1 MGKGVVPDAHPNCVSAARTH-------ALQNADLVLLLGARLNWMLHFGRAPRFKSNVKI 53
MG G P + N + H A+ + D++L +GAR + + GR F N K
Sbjct: 250 MGLGAYPASGKNWLGMLGMHGTYEANMAMHDCDVMLCVGARFDDRIT-GRLDAFSPNSKK 308
Query: 54 IQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQEL 107
I +D++ ++ +V+ V I DV ++ + ++ + A + WW ++
Sbjct: 309 IHIDIDPSSINKNVRVDVPIIGDVGHVLEDMLRLWKARGKKPDKEALADWWGQI 362
>gnl|CDD|180919 PRK07282, PRK07282, acetolactate synthase catalytic subunit;
Reviewed.
Length = 566
Score = 41.0 bits (96), Expect = 4e-05
Identities = 20/91 (21%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 1 MGKGVVPDAHPNCVSAARTH-------ALQNADLVLLLGARLNWMLHFGRAPRFKSNVKI 53
+G+G + +HP + H A+ AD ++ +G+R + L G F N K+
Sbjct: 246 LGQGTIATSHPLFLGMGGMHGSYAANIAMTEADFMINIGSRFDDRL-TGNPKTFAKNAKV 304
Query: 54 IQVDLNAEELHNSVQAAVAIQSDVRLTVQQL 84
+D++ E+ ++ + + D + +Q L
Sbjct: 305 AHIDIDPAEIGKIIKTDIPVVGDAKKALQML 335
>gnl|CDD|181602 PRK08979, PRK08979, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 572
Score = 40.6 bits (95), Expect = 6e-05
Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 16/119 (13%)
Query: 1 MGKGVVPDAHPNCVSAARTH-------ALQNADLVLLLGARLNWMLHFGRAP----RFKS 49
MG G P H N + H A+ NADL+ +G R + R ++
Sbjct: 242 MGLGAFPGTHKNSLGMLGMHGRYEANMAMHNADLIFGIGVRFD-----DRTTNNLEKYCP 296
Query: 50 NVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELK 108
N I+ +D++ + +V+ + I + + +L + +A + WW E++
Sbjct: 297 NATILHIDIDPSSISKTVRVDIPIVGSADKVLDSMLALLDESGETNDEAAIASWWNEIE 355
>gnl|CDD|168717 PRK06882, PRK06882, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 39.1 bits (91), Expect = 2e-04
Identities = 19/87 (21%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 21 ALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLT 80
A+ +DL+L +G R + A ++ N K+I +D++ + +V A + I +
Sbjct: 269 AMHESDLILGIGVRFDDRTTNNLA-KYCPNAKVIHIDIDPTSISKNVPAYIPIVGSAKNV 327
Query: 81 VQQLKQMLSHTQRNWSFSATSPWWQEL 107
+++ +L S + + WWQ++
Sbjct: 328 LEEFLSLLEEENLAKSQTDLTAWWQQI 354
>gnl|CDD|236243 PRK08327, PRK08327, acetolactate synthase catalytic subunit;
Validated.
Length = 569
Score = 38.8 bits (91), Expect = 2e-04
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Query: 7 PDAHPNCVSAARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHN- 65
P HP + L ADLVL++ + + W+ R ++ ++IQ+D + L +
Sbjct: 262 PSDHPLHLGPDPRADLAEADLVLVVDSDVPWIPKKIRPD---ADARVIQID--VDPLKSR 316
Query: 66 ----SVQAAVAIQSDVRLTVQQLKQMLSH 90
+ IQ+D + QL++ L
Sbjct: 317 IPLWGFPCDLCIQADTSTALDQLEERLKS 345
>gnl|CDD|235718 PRK06154, PRK06154, hypothetical protein; Provisional.
Length = 565
Score = 39.0 bits (91), Expect = 2e-04
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 10/97 (10%)
Query: 2 GKGVVPDAHP-------NCVSAARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKII 54
GK P+ HP A H L+ AD++ +G L + P K+ II
Sbjct: 251 GKSAFPEDHPLALGSGGRARPATVAHFLREADVLFGIGCSLTRSYYGLPMPEGKT---II 307
Query: 55 QVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHT 91
L+ +L+ + D L ++Q+ + L
Sbjct: 308 HSTLDDADLNKDYPIDHGLVGDAALVLKQMIEELRRR 344
>gnl|CDD|181285 PRK08199, PRK08199, thiamine pyrophosphate protein; Validated.
Length = 557
Score = 37.9 bits (89), Expect = 5e-04
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 19/96 (19%)
Query: 5 VVPDAHPNCVS----------AARTHALQNADLVLLLGARLNWMLHFG----RAPRFKSN 50
+ + HPN AAR ++ ADLVL +G RL + G P +
Sbjct: 244 LFDNRHPNYAGDLGLGINPALAAR---IREADLVLAVGTRLGEVTTQGYTLLDIPVPRQ- 299
Query: 51 VKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQ 86
++ V +AEEL + +AI +D L
Sbjct: 300 -TLVHVHPDAEELGRVYRPDLAIVADPAAFAAALAA 334
>gnl|CDD|226469 COG3960, COG3960, Glyoxylate carboligase [General function
prediction only].
Length = 592
Score = 37.2 bits (86), Expect = 8e-04
Identities = 30/125 (24%), Positives = 47/125 (37%), Gaps = 15/125 (12%)
Query: 1 MGKGVVPDAHP---NCVSAARTHALQNA-----DLVLLLGARLNWM-LHFGRAPRFKSNV 51
MG G +PD HP V +H NA D+V +G R W H G +
Sbjct: 239 MGWGCIPDDHPLMAGMVGLQTSHRYGNATLLASDMVFGIGNR--WANRHTGSVEVYTEGR 296
Query: 52 KIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKC 111
K I VD+ ++ + I SD + + +L + W + P + C
Sbjct: 297 KFIHVDIEPTQIGRVFCPDLGIVSDAKAAL----TLLLDVAQEWKKAGKLPCRKAWVADC 352
Query: 112 QTNRQ 116
Q ++
Sbjct: 353 QQRKR 357
>gnl|CDD|235700 PRK06112, PRK06112, acetolactate synthase catalytic subunit;
Validated.
Length = 578
Score = 37.0 bits (86), Expect = 8e-04
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 26/106 (24%)
Query: 1 MGKGVVPDAHP-------NCV---SAAR--THALQNADLVLLLGARLN------WMLHFG 42
MGKG V + HP + + S R ++ AD+VLL+G R N W L
Sbjct: 249 MGKGAVDETHPLSLGVVGSLMGPRSPGRHLRDLVREADVVLLVGTRTNQNGTDSWSL--- 305
Query: 43 RAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQML 88
+ + I +D++ EE+ + + A+ + D RLT+ L L
Sbjct: 306 ----YPEQAQYIHIDVDGEEVGRNYE-ALRLVGDARLTLAALTDAL 346
>gnl|CDD|213733 TIGR02720, pyruv_oxi_spxB, pyruvate oxidase. Members of this
family are examples of pyruvate oxidase (EC 1.2.3.3), an
enzyme with FAD and TPP as cofactors that catalyzes the
reaction pyruvate + phosphate + O2 + H2O = acetyl
phosphate + CO2 + H2O2. It should not be confused with
pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in
E. coli PoxB, although the E. coli enzyme is closely
homologous and has pyruvate oxidase as an alternate name
[Energy metabolism, Aerobic].
Length = 575
Score = 35.2 bits (81), Expect = 0.005
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 17/125 (13%)
Query: 3 KGVVPDAHP-NCVSAART------HALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQ 55
KG++ D +P SA R AL ADLVL +G + +A FK+ IQ
Sbjct: 236 KGIIEDRYPAYLGSAYRVAQKPANEALFQADLVLFVGNNYPFA-EVSKA--FKNTKYFIQ 292
Query: 56 VDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNR 115
+D++ +L +A+ +D + + L +L+ + ++PWWQ + R
Sbjct: 293 IDIDPAKLGKRHHTDIAVLADAK---KALAAILAQVEP----RESTPWWQANVANVKNWR 345
Query: 116 QFKKQ 120
+
Sbjct: 346 AYLAS 350
>gnl|CDD|226471 COG3962, COG3962, Acetolactate synthase [Amino acid transport and
metabolism].
Length = 617
Score = 34.7 bits (80), Expect = 0.006
Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 11/103 (10%)
Query: 2 GKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKII 54
GK + HP + A A + ADLV+ +G RL +A VK +
Sbjct: 266 GKSALAWDHPLNLGGVGVTGTLAANRAAEEADLVIGIGTRLQDFTTGSKALFKNPGVKFL 325
Query: 55 QVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS--HTQRNW 95
LN + A+ + +D R ++ L + L T W
Sbjct: 326 N--LNVQPFDAYKHDALPLVADARAGLEALSEALGGYRTAAGW 366
>gnl|CDD|236076 PRK07710, PRK07710, acetolactate synthase catalytic subunit;
Reviewed.
Length = 571
Score = 33.2 bits (76), Expect = 0.020
Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%)
Query: 1 MGKGVVPDAHPNCVSAARTH-------ALQNADLVLLLGARLNWMLHFGRAPRFKSNVKI 53
+G G P HP + A H AL DL++ +GAR + + G F +
Sbjct: 251 LGLGGFPADHPLFLGMAGMHGTYTANMALYECDLLINIGARFDDRVT-GNLAYFAKEATV 309
Query: 54 IQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELK 108
+D++ E+ +V + I +D + +Q L Q+ W LK
Sbjct: 310 AHIDIDPAEIGKNVPTEIPIVADAKQALQVL------LQQEGKKENHHEWLSLLK 358
>gnl|CDD|226470 COG3961, COG3961, Pyruvate decarboxylase and related thiamine
pyrophosphate-requiring enzymes [Carbohydrate transport
and metabolism / Coenzyme metabolism / General function
prediction only].
Length = 557
Score = 32.3 bits (74), Expect = 0.036
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 1 MGKGVVPDAHPN-------CVSAARTH-ALQNADLVLLLGARLNWMLHFGRAPRFKSNVK 52
MGKGV+ ++HPN +S A+++ADL+L +G L G ++K
Sbjct: 245 MGKGVIDESHPNYLGVYNGKLSEPEVREAVESADLILTIGVLLTDFNTGGFTYQYKPA-N 303
Query: 53 IIQVDLNAEELHNSVQAAV 71
II++ ++ ++ ++V +
Sbjct: 304 IIEIHPDSVKIKDAVFTNL 322
>gnl|CDD|183066 PRK11269, PRK11269, glyoxylate carboligase; Provisional.
Length = 591
Score = 31.9 bits (73), Expect = 0.057
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 1 MGKGVVPDAHP---NCVSAARTHALQNA-----DLVLLLGARLNWM-LHFGRAPRFKSNV 51
MG G +PD HP V +H NA D VL +G R W H G +
Sbjct: 239 MGWGAIPDDHPLMAGMVGLQTSHRYGNATLLASDFVLGIGNR--WANRHTGSVEVYTKGR 296
Query: 52 KIIQVDL 58
K + VD+
Sbjct: 297 KFVHVDI 303
>gnl|CDD|235931 PRK07092, PRK07092, benzoylformate decarboxylase; Reviewed.
Length = 530
Score = 31.1 bits (71), Expect = 0.10
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 16/95 (16%)
Query: 4 GVVPDAHPNCVSAARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEEL 63
G +P A +SA L DLVL++GA + G P +++Q+ + E
Sbjct: 257 GFLP-ASREKISAL----LDGHDLVLVIGAPVFTYHVEGPGPHLPEGAELVQLTDDPGE- 310
Query: 64 HNSVQAAV-----AIQSDVRLTVQQLKQMLSHTQR 93
AA AI D+RL ++ L +L + R
Sbjct: 311 -----AAWAPMGDAIVGDIRLALRDLLALLPPSAR 340
>gnl|CDD|180614 PRK06546, PRK06546, pyruvate dehydrogenase; Provisional.
Length = 578
Score = 30.7 bits (70), Expect = 0.15
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 17 ARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSD 76
A A+ ADL++LLG + +F +V+ QVD++ E L + +A+ D
Sbjct: 258 AAHEAMHEADLLILLGTDFPY-------DQFLPDVRTAQVDIDPEHLGRRTRVDLAVHGD 310
Query: 77 VRLTVQQLKQML 88
V T++ L ++
Sbjct: 311 VAETIRALLPLV 322
>gnl|CDD|217119 pfam02579, Nitro_FeMo-Co, Dinitrogenase iron-molybdenum cofactor.
This family contains several NIF (B, Y and X) proteins
which are iron-molybdenum cofactors (FeMo-co) in the
dinitrogenase enzyme which catalyzes the reduction of
dinitrogen to ammonium. Dinitrogenase is a
hetero-tetrameric (alpha(2)beta(2)) enzyme which
contains the iron-molybdenum cofactor (FeMo-co) at its
active site.
Length = 94
Score = 28.4 bits (64), Expect = 0.36
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 11/58 (18%)
Query: 31 LGARLNWMLHFGRAPRF------KSNVKIIQVDLNAEELHNSVQAAVA---IQSDVRL 79
G+R++ HFGRAP F V++++ A + +A V
Sbjct: 1 DGSRVDQ--HFGRAPYFAIYEVDDGGVEVVENREPACDEGGGGGGKLAQLLALEGVDA 56
>gnl|CDD|224737 COG1824, COG1824, Permease, similar to cation transporters
[Inorganic ion transport and metabolism].
Length = 203
Score = 27.7 bits (62), Expect = 1.1
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 10/48 (20%)
Query: 26 DLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 73
+L +LGARL+ LH G II+ N +L N++ A++ +
Sbjct: 77 NLGSILGARLSTALHLG----------IIEDIRNLPDLANNLVASLVL 114
>gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate
dehydrogenase proteins. Members of this subfamily have
an LDH-like structure and an MDH enzymatic activity.
Some members, like MJ0490 from Methanococcus jannaschii,
exhibit both MDH and LDH activities. Tetrameric MDHs,
including those from phototrophic bacteria, are more
similar to LDHs than to other MDHs. LDH catalyzes the
last step of glycolysis in which pyruvate is converted
to L-lactate. MDH is one of the key enzymes in the
citric acid cycle, facilitating both the conversion of
malate to oxaloacetate and replenishing levels of
oxalacetate by reductive carboxylation of pyruvate. The
LDH-like MDHs are part of the NAD(P)-binding Rossmann
fold superfamily, which includes a wide variety of
protein families including the NAD(P)-binding domains of
alcohol dehydrogenases, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate
dehydrogenases, formate/glycerate dehydrogenases,
siroheme synthases, 6-phosphogluconate dehydrogenases,
aminoacid dehydrogenases, repressor rex, and NAD-binding
potassium channel domains, among others.
Length = 300
Score = 27.4 bits (62), Expect = 1.5
Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
Query: 52 KIIQVDLNAEE---LHNSVQA 69
KII++DL EE SV++
Sbjct: 274 KIIELDLTDEEKEAFDKSVES 294
>gnl|CDD|235306 PRK04531, PRK04531, acetylglutamate kinase; Provisional.
Length = 398
Score = 26.9 bits (60), Expect = 2.5
Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 13/93 (13%)
Query: 12 NCVSAAR--THALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQA 69
N AA ALQ ++ L G ++ K+I +N ++ +
Sbjct: 149 NADVAANELVSALQPYKIIFL----------TGTGGLLDADGKLISS-INLSTEYDHLMQ 197
Query: 70 AVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSP 102
I ++L ++Q+K++L S S TSP
Sbjct: 198 QPWINGGMKLKLEQIKELLDRLPLESSVSITSP 230
>gnl|CDD|213027 cd10970, CE4_DAC_u1_6s, Putative catalytic NodB homology domain of
uncharacterized prokaryotic polysaccharide deacetylases
which consist of a 6-stranded beta/alpha barrel. This
family contains uncharacterized prokaryotic
polysaccharide deacetylases. Although their biological
functions remain unknown, all members of the family
contain a conserved domain with a 6-stranded beta/alpha
barrel, which is similar to the catalytic NodB homology
domain of rhizobial NodB-like proteins, belonging to the
larger carbohydrate esterase 4 (CE4) superfamily.
Length = 194
Score = 26.5 bits (59), Expect = 3.0
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 7/38 (18%)
Query: 72 AIQSDVRLTVQQLKQM-------LSHTQRNWSFSATSP 102
+I S RLT+ QL+++ SHT + + S
Sbjct: 37 SIGSSGRLTLDQLRELQDAGWEIASHTLTHTDLTELSA 74
>gnl|CDD|181182 PRK07960, fliI, flagellum-specific ATP synthase; Validated.
Length = 455
Score = 26.3 bits (58), Expect = 4.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 81 VQQLKQMLSHTQRN 94
V+Q KQ+LS QRN
Sbjct: 388 VRQFKQLLSSFQRN 401
>gnl|CDD|238218 cd00368, Molybdopterin-Binding, Molybdopterin-Binding (MopB) domain
of the MopB superfamily of proteins, a large, diverse,
heterogeneous superfamily of enzymes that, in general,
bind molybdopterin as a cofactor. The MopB domain is
found in a wide variety of molybdenum- and
tungsten-containing enzymes, including formate
dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of
nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide
reductase (DMSOR), thiosulfate reductase,
formylmethanofuran dehydrogenase, and arsenite oxidase.
Molybdenum is present in most of these enzymes in the
form of molybdopterin, a modified pterin ring with a
dithiolene side chain, which is responsible for ligating
the Mo. In many bacterial and archaeal species,
molybdopterin is in the form of a dinucleotide, with two
molybdopterin dinucleotide units per molybdenum. These
proteins can function as monomers, heterodimers, or
heterotrimers, depending on the protein and organism.
Also included in the MopB superfamily is the
eukaryotic/eubacterial protein domain family of the
75-kDa subunit/Nad11/NuoG (second domain) of respiratory
complex 1/NADH-quinone oxidoreductase which is
postulated to have lost an ancestral formate
dehydrogenase activity and only vestigial sequence
evidence remains of a molybdopterin binding site.
Length = 374
Score = 26.1 bits (58), Expect = 5.0
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 22 LQNADLVLLLGA--RLNWMLHFGR-APRFKSNVKIIQVD 57
++NADL+LL G+ + R K K+I +D
Sbjct: 154 IENADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVID 192
>gnl|CDD|165322 PHA03024, PHA03024, hypothetical protein; Provisional.
Length = 229
Score = 26.0 bits (57), Expect = 5.3
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 27 LVLLLGARLNWMLHFGRAPRF-KSNVKIIQVDLNAEELHN 65
++LL ++ F F +N KII ++ NA ++N
Sbjct: 12 IILLAAIIGIYIFTFLFNIDFLINNNKIIALNANAIAINN 51
>gnl|CDD|221400 pfam12059, DUF3540, Protein of unknown function (DUF3540). This
family of proteins is functionally uncharacterized. This
protein is found in bacteria. Proteins in this family
are typically between 212 to 238 amino acids in length.
This protein has a conserved SCL sequence motif.
Length = 195
Score = 25.8 bits (57), Expect = 6.8
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 55 QVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSH-TQR 93
Q DL EEL+ Q VRL + L+ + TQR
Sbjct: 104 QADLTTEELNAHSQKMKGQVETVRLVARTLESVADRLTQR 143
>gnl|CDD|239153 cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha
subunit (Formate-Dh-Na) is a major component of nitrate
respiration in bacteria such as in the E. coli formate
dehydrogenase N (Fdh-N). Fdh-N is a membrane protein
that is a complex of three different subunits and is the
major electron donor to the nitrate respiratory chain.
Also included in this CD is the Desulfovibrio gigas
tungsten formate dehydrogenase, DgW-FDH. In contrast to
Fdh-N, which is a functional heterotrimer, DgW-FDH is a
heterodimer. The DgW-FDH complex is composed of a large
subunit carrying the W active site and one [4Fe-4S]
center, and a small subunit that harbors a series of
three [4Fe-4S] clusters as well as a putative vacant
binding site for a fourth cluster. The smaller subunit
is not included in this alignment. Members of the
MopB_Formate-Dh-Na-like CD belong to the
molybdopterin_binding (MopB) superfamily of proteins.
Length = 649
Score = 25.8 bits (57), Expect = 6.9
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 10/43 (23%)
Query: 22 LQNADLVLLLGARLN-------WMLHFGRAPRFKSNVKIIQVD 57
++NAD++L++G N A + K+ K+I VD
Sbjct: 167 IKNADVILVMGG--NPAEAHPVSFKWILEA-KEKNGAKLIVVD 206
>gnl|CDD|238315 cd00562, NifX_NifB, This CD represents a family of
iron-molybdenum cluster-binding proteins that includes
NifB, NifX, and NifY, all of which are involved in the
synthesis of an iron-molybdenum cofactor (FeMo-co) that
binds the active site of the dinitrogenase enzyme.
This domain is a predicted small-molecule-binding
domain (SMBD) with an alpha/beta fold that is present
either as a stand-alone domain (e.g. NifX and NifY) or
fused to another conserved domain (e.g. NifB) however,
its function is still undetermined.The SCOP database
suggests that this domain is most similar to structures
within the ribonuclease H superfamily. This conserved
domain is represented in two of the three major
divisions of life (bacteria and archaea).
Length = 102
Score = 24.9 bits (55), Expect = 7.1
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 40 HFGRAPRF 47
HFGRAP F
Sbjct: 15 HFGRAPEF 22
>gnl|CDD|193503 cd03882, M28_nicalin_like, M28 Zn-Peptidase Nicalin, Nicastrin-like
protein. Peptidase M28 family, Nicalin (nicastrin-like
protein) subfamily. Nicalin is distantly related to
Nicastrin, a component of the Alzheimer's
disease-associated gamma-secretase, and forms a complex
with Nomo (nodal modulator) pM5. Similar to Nicastrin,
Nicalin lacks the amino-acid conservation required for
catalytically active aminopeptidases. Functional studies
in zebrafish embryos and cultured human cells reveal
that nicalin and Nomo collaborate to antagonize the
Nodal/TGFbeta signaling pathway. Thus, nicastrin and
nicalin are both associated with protein complexes
involved in cell fate decisions during early embryonic
development.
Length = 290
Score = 25.4 bits (56), Expect = 9.8
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 14/80 (17%)
Query: 19 THALQNADLVLLLGARLNW---MLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQS 75
L N + VL L + + LH + P+ + +L + +
Sbjct: 163 DRLLDNVEFVLCLDSIGSKDSLYLHVSKPPKEGTPAFQFFEELES-----------VAEP 211
Query: 76 DVRLTVQQLKQMLSHTQRNW 95
++ LTV K L+ T+ W
Sbjct: 212 NLNLTVVHKKINLADTKLAW 231
>gnl|CDD|226906 COG4529, COG4529, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 474
Score = 25.4 bits (56), Expect = 9.8
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 77 VRLTVQQLKQMLSHTQRNWSFSATSPWW 104
+R Q + Q L +R P W
Sbjct: 284 LRPQGQWIWQNLPAVERRRFERHLRPIW 311
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.129 0.396
Gapped
Lambda K H
0.267 0.0674 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,736,577
Number of extensions: 464460
Number of successful extensions: 600
Number of sequences better than 10.0: 1
Number of HSP's gapped: 564
Number of HSP's successfully gapped: 68
Length of query: 120
Length of database: 10,937,602
Length adjustment: 83
Effective length of query: 37
Effective length of database: 7,256,220
Effective search space: 268480140
Effective search space used: 268480140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.3 bits)