RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14417
(120 letters)
>d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase
{Pseudomonas putida [TaxId: 303]}
Length = 160
Score = 50.6 bits (120), Expect = 1e-09
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 15 SAARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQ 74
AA + L+ D+VL++GA + + K ++I V + E AI
Sbjct: 76 IAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEA-ARAPMGDAIV 134
Query: 75 SDVRLTVQQLKQMLSHTQR 93
+D+ L ++ + R
Sbjct: 135 ADIGAMASALANLVEESSR 153
>d1pvda1 c.31.1.3 (A:182-360) Pyruvate decarboxylase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 179
Score = 47.6 bits (112), Expect = 2e-08
Identities = 12/74 (16%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 20 HALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRL 79
A+++ADL+L +GA L+ + G I++ + ++ N+ V ++ ++
Sbjct: 93 EAVESADLILSVGALLSDF-NTGSFSYSYKTKNIVEFHSDHMKIRNATFPGVQMKFVLQK 151
Query: 80 TVQQLKQMLSHTQR 93
+ + +
Sbjct: 152 LLTNIADAAKGYKP 165
>d1ytla1 c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synthase
complex epsilon subunit 2, ACDE2 {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 158
Score = 45.7 bits (108), Expect = 8e-08
Identities = 13/99 (13%), Positives = 31/99 (31%), Gaps = 13/99 (13%)
Query: 1 MGKGVVPDAHPNCVSAARTH----------ALQNADLVLLLGARLNWM-LHFGRAPRFKS 49
+ G+ + + N DLVL+LG+ F
Sbjct: 59 IDAGLGEKVNYAVLHELTQFLLDPDWKGFDGQGNYDLVLMLGSIYYHGSQMLAAIKNFAP 118
Query: 50 NVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQML 88
+++ + +D N+ + + ++ L ++L
Sbjct: 119 HIRALAIDRYYHP--NADMSFGNLWKKEEDYLKLLDEIL 155
>d2ji7a1 c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase {Oxalobacter
formigenes [TaxId: 847]}
Length = 175
Score = 43.4 bits (101), Expect = 8e-07
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 1 MGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWMLHFGRAP-RFKSNVKIIQVDLN 59
M KG++PD HP +A R AL D+ +L+GARLNW++ G+ K +Q+D+
Sbjct: 55 MAKGLLPDNHPQSAAATRAFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQ 114
Query: 60 AEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNR 115
A E+ ++ A + D++ V L++ L + + W LK K N+
Sbjct: 115 ANEMDSNQPIAAPVVGDIKSAVSLLRKALKGAPKAD-----AEWTGALKAKVDGNK 165
>d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase
{Klebsiella pneumoniae [TaxId: 573]}
Length = 179
Score = 43.0 bits (100), Expect = 1e-06
Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 9/108 (8%)
Query: 10 HPNCVSAARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQA 69
+ A LQ ADLV+ +G N ++ +D+ +
Sbjct: 73 VGLFNNQAGDRLLQLADLVICIGYSPVEYEPAMW---NSGNATLVHIDVLPAYEERNYTP 129
Query: 70 AVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQF 117
V + D+ T+ +L Q + H SP E+ Q R+
Sbjct: 130 DVELVGDIAGTLNKLAQNIDHR------LVLSPQAAEILRDRQHQREL 171
>d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic
subunit {Thale cress (Arabidopsis thaliana), chloroplast
[TaxId: 3702]}
Length = 179
Score = 40.7 bits (94), Expect = 7e-06
Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 9/115 (7%)
Query: 1 MGKGVVPDAHPNCV-------SAARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKI 53
MG G P + + +A++++DL+L G R + G+ F S KI
Sbjct: 53 MGLGSYPCDDELSLHMLGMHGTVYANYAVEHSDLLLAFGVRFDDR-VTGKLEAFASRAKI 111
Query: 54 IQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELK 108
+ +D+++ E+ + V++ DV+L +Q + ++L + W EL
Sbjct: 112 VHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLENRAEELK-LDFGVWRNELN 165
>d1ovma1 c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxylase
{Enterobacter cloacae [TaxId: 550]}
Length = 161
Score = 38.9 bits (90), Expect = 3e-05
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 15 SAARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQ 74
+ A A++ AD VL +G R L G + + I+V +A + + + +
Sbjct: 87 TGAVKEAIEGADTVLCVGTRFTDTLTAGFTHQLT-PAQTIEVQPHAARVGDVWFTGIPMN 145
Query: 75 SDVRLTVQQLKQMLS 89
+ V+ KQ +
Sbjct: 146 QAIETLVELCKQHVH 160
>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas
mobilis [TaxId: 542]}
Length = 175
Score = 33.3 bits (75), Expect = 0.003
Identities = 10/94 (10%), Positives = 29/94 (30%), Gaps = 9/94 (9%)
Query: 1 MGKGVVPDAHPNCV--------SAARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVK 52
K P+ + + ++ AD V+ L N K
Sbjct: 58 AAKSFFPEENALYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDY-STTGWTDIPDPKK 116
Query: 53 IIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQ 86
++ + + ++ +V ++ + Q++ +
Sbjct: 117 LVLAEPRSVVVNGIRFPSVHLKDYLTRLAQKVSK 150
>d1to6a_ c.141.1.1 (A:) Glycerate kinase GlxK {Neisseria
meningitidis, (serogroup A) [TaxId: 487]}
Length = 371
Score = 28.7 bits (64), Expect = 0.15
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 14/85 (16%)
Query: 20 HALQNADLVLLLGARLNWMLHFGRAP-----RFKSNVKII----QVDLNAEELH-NSVQA 69
+ + DLV++ RL+ G+AP R V ++ + + L ++QA
Sbjct: 274 KKVSDVDLVIVGEGRLDRQSLAGKAPIGVAKRTPVGVPVVAICGSLVEDLPSLPFENIQA 333
Query: 70 AVAIQSDVRLTVQQLKQMLSHTQRN 94
A +I + L+ L +
Sbjct: 334 AFSILEK----SEPLEDSLKNASLY 354
>d1rdua_ c.55.5.1 (A:) Hypothetical protein TM1290 {Thermotoga
maritima [TaxId: 2336]}
Length = 116
Score = 26.8 bits (59), Expect = 0.47
Identities = 7/48 (14%), Positives = 14/48 (29%), Gaps = 6/48 (12%)
Query: 40 HFGRAPRFK------SNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTV 81
F RA F NV++++ + + V +
Sbjct: 20 RFARAEYFIIYDTESGNVEVVENTIADAHGTGPKVVQSLVSKGVEYLI 67
>d1ikpa1 b.29.1.7 (A:2-251) Exotoxin A, N-terminal domain
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 250
Score = 26.6 bits (58), Expect = 0.74
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 10/68 (14%)
Query: 35 LNWMLHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRN 94
LNW++ G SN+K+ +LNA + + I+ ++L+ R+
Sbjct: 98 LNWLVPIGHEK--PSNIKVFIHELNAGNQLSHMSPIYTIEMG--------DELLAKLARD 147
Query: 95 WSFSATSP 102
+F +
Sbjct: 148 ATFFVRAH 155
>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 262
Score = 26.1 bits (57), Expect = 1.2
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 11/75 (14%)
Query: 31 LGARLNWMLHFGRAP-----------RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRL 79
G L + FGR P R + K+ D ++ ++ + + +R
Sbjct: 186 FGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYEVMKNCWHLDAAMRP 245
Query: 80 TVQQLKQMLSHTQRN 94
+ QL++ L H + +
Sbjct: 246 SFLQLREQLEHIKTH 260
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress
(Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]}
Length = 306
Score = 25.4 bits (55), Expect = 1.9
Identities = 23/113 (20%), Positives = 37/113 (32%), Gaps = 14/113 (12%)
Query: 3 KGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWMLHFGRAPRFKSNVKIIQVDLNAEE 62
K + +A P VS + AL + V L G +W + GR +N + + +
Sbjct: 85 KTALENACPGVVSCSDVLALASEASVSLAG-GPSWTVLLGRRDSLTAN--LAGANSSIPS 141
Query: 63 LHNSVQAAVAIQSDVRLTVQQLKQML-----------SHTQRNWSFSATSPWW 104
S+ S V L L + R ++FS T
Sbjct: 142 PIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVFNNRLFNFSGTGNPD 194
>d1wr6a1 a.7.8.1 (A:211-300) ADP-ribosylation factor binding protein
Gga3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 24.3 bits (53), Expect = 2.6
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 77 VRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQ 116
V V+ L +ML H + S +EL +C+ R+
Sbjct: 11 VNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQCENKRR 50
>d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans
[TaxId: 1377]}
Length = 177
Score = 25.0 bits (53), Expect = 2.6
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 55 QVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQML-SHTQRNWSFSAT---SPWWQELK 108
Q+D++ L A VAI D L + ++ + + + W + + W + +
Sbjct: 113 QIDIDPAMLGKRHHADVAILGDAALAIDEILNKVDAVEESAWWTANLKNIANWREYIN 170
>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 152
Score = 24.5 bits (53), Expect = 3.1
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 51 VKIIQVDLNAEE---LHNSVQAAVAIQSDV 77
++ + L+ EE L NS + ++
Sbjct: 121 AEVADIKLSDEEIEKLRNSAKILRERLEEL 150
>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 24.7 bits (53), Expect = 3.6
Identities = 8/74 (10%), Positives = 22/74 (29%), Gaps = 11/74 (14%)
Query: 28 VLLLGARLNWMLHFGRAP-RFKSNVKIIQVDLNA----------EELHNSVQAAVAIQSD 76
V G + +G+ P R ++ + E+++ + +
Sbjct: 193 VWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVE 252
Query: 77 VRLTVQQLKQMLSH 90
R ++ L +
Sbjct: 253 NRPGFAAVELRLRN 266
>d1mi3a_ c.1.7.1 (A:) Xylose reductase {Fungi (Candida tenuis)
[TaxId: 45596]}
Length = 319
Score = 24.2 bits (51), Expect = 4.9
Identities = 9/37 (24%), Positives = 10/37 (27%), Gaps = 8/37 (21%)
Query: 35 LNWMLHFGRAP--------RFKSNVKIIQVDLNAEEL 63
L W G A R N DL E+
Sbjct: 258 LRWAAQRGIAVIPKSNLPERLVQNRSFNTFDLTKEDF 294
>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 273
Score = 24.3 bits (52), Expect = 5.2
Identities = 21/100 (21%), Positives = 31/100 (31%), Gaps = 12/100 (12%)
Query: 1 MGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWMLHFGRAPRF-KSNVKIIQVDLN 59
KG +P S +D V + G + +L G P N +I N
Sbjct: 166 ASKGKLPIKWMAPESINFRRFTSASD-VWMFGVCMWEILMHGVKPFQGVKNNDVIGRIEN 224
Query: 60 AE----------ELHNSVQAAVAIQSDVRLTVQQLKQMLS 89
E L++ + A R +LK LS
Sbjct: 225 GERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLS 264
>d1s1pa_ c.1.7.1 (A:) Prostaglandin d2 11-ketoreductase (akr1c3)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 315
Score = 24.1 bits (51), Expect = 5.5
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 8/37 (21%)
Query: 35 LNWMLHFGRAP--------RFKSNVKIIQVDLNAEEL 63
L + L G R + NV++ + L AE++
Sbjct: 252 LRYQLQRGVVVLAKSYNEQRIRQNVQVFEFQLTAEDM 288
>d1afsa_ c.1.7.1 (A:) 3-alpha-hydroxysteroid dehydrogenase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 319
Score = 24.2 bits (51), Expect = 5.6
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 8/37 (21%)
Query: 35 LNWMLHFGRAP--------RFKSNVKIIQVDLNAEEL 63
L + L G P R K ++ + L +E++
Sbjct: 257 LRYQLQRGVVPLIRSFNAKRIKELTQVFEFQLASEDM 293
>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo
sapiens) [TaxId: 9606]}
Length = 263
Score = 23.9 bits (51), Expect = 6.4
Identities = 8/73 (10%), Positives = 24/73 (32%), Gaps = 11/73 (15%)
Query: 28 VLLLGARLNWMLHFGRAPRF-----------KSNVKIIQVDLNAEELHNSVQAAVAIQSD 76
V G + + G+ P + ++ + L + ++ + + +
Sbjct: 185 VWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWKERPE 244
Query: 77 VRLTVQQLKQMLS 89
R +L + L+
Sbjct: 245 DRPAFSRLLRQLA 257
>d1qwka_ c.1.7.1 (A:) Hypothetical protein C07D8.6 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 312
Score = 23.8 bits (50), Expect = 6.7
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 8/37 (21%)
Query: 35 LNWMLHFGRAP--------RFKSNVKIIQVDLNAEEL 63
L + L G A R K N ++ L E++
Sbjct: 246 LRYALDRGCAILPKSIQENRIKENFEVFDFSLTEEDI 282
>d3btaa2 b.42.4.2 (A:1079-1295) Botulinum neurotoxin {Clostridium
botulinum, serotype A [TaxId: 1491]}
Length = 217
Score = 23.7 bits (51), Expect = 7.3
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 81 VQQLKQMLSHTQRNWSFSATSPWWQELKL 109
+Q+++ +W F W E L
Sbjct: 189 NRQIERSSRTLGCSWEFIPVDDGWGERPL 217
>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 325
Score = 23.6 bits (50), Expect = 7.5
Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 12/73 (16%)
Query: 28 VLLLGARLNWMLHFGRAPRFKSNV-----KIIQVDLN-------AEELHNSVQAAVAIQS 75
V G L + G P V K+IQ EE++ +Q+ A S
Sbjct: 249 VWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDS 308
Query: 76 DVRLTVQQLKQML 88
R + L L
Sbjct: 309 RKRPSFPNLTSFL 321
>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 285
Score = 23.5 bits (50), Expect = 7.7
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 16/86 (18%)
Query: 31 LGARLNWMLHFGRAP-RFKSNVKIIQVDLNA----------EELHNSVQAAVAIQSDVRL 79
G L + GR P N +++ E LH+ + + + R
Sbjct: 200 FGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERP 259
Query: 80 TVQQLKQMLSHTQRNWSFSATSPWWQ 105
T + L+ L F++T P +Q
Sbjct: 260 TFEYLQAFLED-----YFTSTEPQYQ 280
>d1frba_ c.1.7.1 (A:) FR-1 (fibroblast growth factor-induced)
protein {Mouse (Mus musculus) [TaxId: 10090]}
Length = 315
Score = 23.4 bits (49), Expect = 9.6
Identities = 5/37 (13%), Positives = 14/37 (37%), Gaps = 8/37 (21%)
Query: 35 LNWMLHFGRAP--------RFKSNVKIIQVDLNAEEL 63
+ + + R + N+++ L+ EE+
Sbjct: 249 IRFHIQRNVVVIPKSVTPSRIQENIQVFDFQLSDEEM 285
>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 272
Score = 23.5 bits (50), Expect = 9.7
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 16/81 (19%)
Query: 31 LGARLNWMLHFGRAP-----------RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRL 79
G L ++ GR P + ++++ D EEL+ ++ + + R
Sbjct: 196 FGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRP 255
Query: 80 TVQQLKQMLSHTQRNWSFSAT 100
T L+ +L F+AT
Sbjct: 256 TFDYLRSVLEDF-----FTAT 271
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.129 0.396
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 426,561
Number of extensions: 15505
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 39
Length of query: 120
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,391,576
Effective search space: 64012496
Effective search space used: 64012496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)