Query psy1442
Match_columns 186
No_of_seqs 92 out of 108
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 19:24:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1442.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1442hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3972|consensus 100.0 4E-69 8.7E-74 455.5 8.2 178 1-179 1-237 (252)
2 PF06105 Aph-1: Aph-1 protein; 100.0 6.6E-66 1.4E-70 442.6 12.1 174 2-177 1-233 (238)
3 PF10086 DUF2324: Putative mem 93.5 0.11 2.4E-06 44.6 4.4 89 53-141 97-207 (223)
4 PF13367 PrsW-protease: Protea 44.3 87 0.0019 25.3 6.3 61 44-113 74-135 (191)
5 PF08122 NDUF_B12: NADH-ubiqui 19.6 55 0.0012 22.5 0.9 23 6-28 23-45 (57)
6 PF06570 DUF1129: Protein of u 18.4 5.6E+02 0.012 21.2 8.6 49 28-79 54-105 (206)
7 PF11710 Git3: G protein-coupl 16.4 6.3E+02 0.014 21.0 7.7 49 94-143 86-145 (201)
8 PHA02132 hypothetical protein 16.2 1.4E+02 0.003 22.2 2.4 24 95-121 15-38 (86)
9 PF09971 DUF2206: Predicted me 15.6 2.2E+02 0.0048 26.3 4.1 44 129-172 15-75 (367)
10 TIGR00939 2a57 Equilibrative N 14.9 3.3E+02 0.0071 25.4 5.1 57 48-106 136-192 (437)
No 1
>KOG3972|consensus
Probab=100.00 E-value=4e-69 Score=455.54 Aligned_cols=178 Identities=40% Similarity=0.756 Sum_probs=176.2
Q ss_pred CcchhhhhHHHHhhhhhhhhhhHhhcCChh--------------------------------------------------
Q psy1442 1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPV-------------------------------------------------- 30 (186)
Q Consensus 1 MT~~~ffGc~fiAfGP~lalF~~tIa~~P~-------------------------------------------------- 30 (186)
||+++||||+|+||||++|+|++|||+||+
T Consensus 1 M~~~~ffgC~fiaFgPa~ALf~~tIA~dPvRIIiliagaFFWLvSLLisSl~W~~l~i~l~~~lifg~~vsV~~qE~fR~ 80 (252)
T KOG3972|consen 1 MGAAVFFGCTFIAFGPAFALFVFTIAHDPVRIIILIAGAFFWLVSLLISSLVWFGLSIVLPDDLIFGATVSVIAQELFRF 80 (252)
T ss_pred CCcceeeeeEEeeeCcchhhheeeecCCCeeehhhHHHHHHHHHHHHHHHHHHHheEccchhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999997
Q ss_pred ------hhhhhhcccccC-cccccchhHHHHhhhhhhHHHHHHHHHHhhhhhcccCccccCCCCCcchhhHhhHHHHHHH
Q psy1442 31 ------KKSRGGLQYVSD-RNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFS 103 (186)
Q Consensus 31 ------rka~~gL~~is~-~~~~~~~~~lAyvsGlGfGimsg~f~~~nvLads~GPGT~g~~~~s~~ffl~SA~~tl~~i 103 (186)
|||||||++++| +|.+++||++|||||||||+|||+|+.+|+|+|++||||+|+|||+|+||++||++++.++
T Consensus 81 ayyklLkka~~GL~si~~d~~~~~s~h~lAyVsGLgfGIiSgvFs~vN~lad~sGPGtvGl~g~s~~~fl~sa~~al~ii 160 (252)
T KOG3972|consen 81 AYYKLLKKAQEGLNSITEDGRLHNSRHMLAYVSGLGFGIISGVFSTVNALADFSGPGTVGLHGDSPYFFLTSAFSALLII 160 (252)
T ss_pred HHHHHHHHHHHHHHhcCccCCCchhHHHHHHHhccchhHHHHHHHHHHHHHhccCCCeeccCCCcchhhHHHHHHHHHHH
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCceeeeehHhHHHHHHHHhhhhhcCCCCeeehhHHHH--HHHHHHHHHHHhCCCcccccccc
Q psy1442 104 LLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFSVLFIIVF--TLFTAMFAYKVIGGSKKTMCNGE 179 (186)
Q Consensus 104 LLH~fW~VIfFdg~~kk~~~~i~~V~~sHl~vS~lTll~N~~~~~~~sl~~~y--l~~~~~~Af~~aGgs~~~~~~~~ 179 (186)
|+||||+|+|||+||||+|+....|+.|||+||.+|++ |+++.|+.++.+.| +++||.|||.+|||++||++|+-
T Consensus 161 LlHvfW~ivffdac~k~~~~~l~~vv~SHLlvs~lt~l-ns~~~y~~~la~~flilvl~g~~af~~aGGt~rSf~~~i 237 (252)
T KOG3972|consen 161 LLHVFWGIVFFDACEKIAYVPLGAVVVSHLLVSFLTFL-NSRGFYVLVLAVQFLILVLMGAWAFVIAGGTIRSFVNGI 237 (252)
T ss_pred HHHHHHHheeehhhhhhchhhhHHHHHHHHHHHHHHHh-CccchhHHHHHHHHHHHHHHHHHHHHHhCccHHHHHhhh
Confidence 99999999999999999999999999999999999999 99999999999999 99999999999999999999985
No 2
>PF06105 Aph-1: Aph-1 protein; InterPro: IPR009294 This family consists of several eukaryotic Aph-1 proteins. Gamma-secretase catalyses the intramembrane proteolysis of Notch, beta-amyloid precursor protein, and other substrates as part of a new signalling paradigm and as a key step in the pathogenesis of Alzheimer's disease. It is thought that the presenilin heterodimer comprises the catalytic site and that a highly glycosylated form of nicastrin associates with it. Aph-1 and Pen-2, two membrane proteins genetically linked to gamma-secretase, associate directly with presenilin and nicastrin in the active protease complex. Co-expression of all four proteins leads to marked increases in presenilin heterodimers, full glycosylation of nicastrin, and enhanced gamma-secretase activity [].; GO: 0016485 protein processing, 0043085 positive regulation of catalytic activity, 0016021 integral to membrane
Probab=100.00 E-value=6.6e-66 Score=442.61 Aligned_cols=174 Identities=41% Similarity=0.725 Sum_probs=168.9
Q ss_pred cchhhhhHHHHhhhhhhhhhhHhhcCChh---------------------------------------------------
Q psy1442 2 TYMEFLGCTMTAFGPVIAMFLTTIMQDPV--------------------------------------------------- 30 (186)
Q Consensus 2 T~~~ffGc~fiAfGP~lalF~~tIa~~P~--------------------------------------------------- 30 (186)
|+++||||+||||||++++|++||||||+
T Consensus 1 T~~~f~Gc~liafgP~lalf~~tIa~~p~liIi~i~~aFfWLvSLLlss~iW~i~~pl~~~l~f~v~~sV~~QE~fR~~~ 80 (238)
T PF06105_consen 1 TLAVFFGCALIAFGPALALFVFTIARDPQLIIILIAGAFFWLVSLLLSSLIWFIVVPLRDNLAFGVLFSVLIQEAFRYLY 80 (238)
T ss_pred ChHHHHHHHHHHHCHHHHhhheeeeCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999998
Q ss_pred ----hhhhhhcccccC-cccccchhHHHHhhhhhhHHHHHHHHHHhhhhhcccCccccCCCC-CcchhhHhhHHHHHHHH
Q psy1442 31 ----KKSRGGLQYVSD-RNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGE-SQYFGFTTSIFTCCFSL 104 (186)
Q Consensus 31 ----rka~~gL~~is~-~~~~~~~~~lAyvsGlGfGimsg~f~~~nvLads~GPGT~g~~~~-s~~ffl~SA~~tl~~iL 104 (186)
||||+||++++| ++.|+|||++|||+|+|||+|||+|+++|+|+|++||||+|+|+| +++||++||++|+|+++
T Consensus 81 ~~ll~kae~gL~~i~~~~~~~~~~~~lA~v~GlGfGimsg~f~~~n~Lads~GPGt~g~~~c~~~~ffl~SA~~tl~~~l 160 (238)
T PF06105_consen 81 YKLLKKAEEGLQSIAEDGTSPISRHQLAYVSGLGFGIMSGVFSFVNILADSLGPGTVGIHGCPSMPFFLTSAFMTLAFIL 160 (238)
T ss_pred HHHHHHHHHHHHHhccccCCCCccceeeehhccchHHHHHHHHHHhhhhhccCCceeccCCCCCccchHHHHHHHHHHHH
Confidence 999999999999 899999999999999999999999999999999999999999995 55699999999999999
Q ss_pred HHHHHHHHHhhccccCceeeeehHhHHHHHHHHhhhhhcCCCCeeehhHHHH--HHHHHHHHHHHhCCCcccccc
Q psy1442 105 LHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFSVLFIIVF--TLFTAMFAYKVIGGSKKTMCN 177 (186)
Q Consensus 105 LH~fW~VIfFdg~~kk~~~~i~~V~~sHl~vS~lTll~N~~~~~~~sl~~~y--l~~~~~~Af~~aGgs~~~~~~ 177 (186)
||||||||+|||||||||+++++|+++|+++|++|++ | ++.|..++++.| ++++++|||+++|||+||+.+
T Consensus 161 LH~fW~VI~F~g~~~~~~~~i~~V~~~Hl~vs~lTll-N-~~~~~~~~v~~~~il~~~~~~a~~~~gg~~~s~~~ 233 (238)
T PF06105_consen 161 LHTFWMVIFFDGCEKKNWWLIAFVVISHLLVSCLTLL-N-SPLYSGGCVPSYPILVLTGAWAFFVAGGSVRSLKR 233 (238)
T ss_pred HHHHHHHhhhhhhccCCceEEEehHHHHHHHHHHHHc-C-ccccccchHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 9999999999999999999999999999999999999 9 779999999999 999999999999999999864
No 3
>PF10086 DUF2324: Putative membrane peptidase family (DUF2324); InterPro: IPR011397 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=93.51 E-value=0.11 Score=44.64 Aligned_cols=89 Identities=24% Similarity=0.269 Sum_probs=63.3
Q ss_pred HHhhhhhhHHHHHHH----HHHhhhhhc--ccCcccc----------------CCCCCcchhhHhhHHHHHHHHHHHHHH
Q psy1442 53 AYVSGLGYGTISAAF----SLLNVLDQV--SGPGTMG----------------LKGESQYFGFTTSIFTCCFSLLHVFWS 110 (186)
Q Consensus 53 AyvsGlGfGimsg~f----~~~nvLads--~GPGT~g----------------~~~~s~~ffl~SA~~tl~~iLLH~fW~ 110 (186)
|+.-|+|||.+=+++ +.+|.+.-+ .=.|+.- +..-|+..++.+.+-..+-+++|+..+
T Consensus 97 al~~GlGhGg~Eailvg~~~~l~~~v~~~~in~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ERi~Al~~hi~lS 176 (223)
T PF10086_consen 97 ALAYGLGHGGIEAILVGGLSLLNNLVLAMMINSGSLDQLLEQPAELLEQIQSALASLPPWSFLLGGVERIFALLFHIGLS 176 (223)
T ss_pred HHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 777899999875544 444644322 1112211 012234468899999999999999999
Q ss_pred HHHhhccccCceeeeehHhHHHHHHHHhhhh
Q psy1442 111 IVFFRGVEIKNRTLVASVVLSHIFISSYTWY 141 (186)
Q Consensus 111 VIfFdg~~kk~~~~i~~V~~sHl~vS~lTll 141 (186)
++.+.+.++||++.....++.|.++=...-+
T Consensus 177 vlV~~av~~~k~~~l~~AIllHaliD~~aal 207 (223)
T PF10086_consen 177 VLVWYAVRQRKKWYLVLAILLHALIDFPAAL 207 (223)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888888999988764433
No 4
>PF13367 PrsW-protease: Protease prsW family
Probab=44.30 E-value=87 Score=25.31 Aligned_cols=61 Identities=18% Similarity=0.318 Sum_probs=40.1
Q ss_pred ccccchhHHHHhhhhhhHHHHHHHHHHhhhhhcccCccccCCCCCcchhhHhhHHHHHH-HHHHHHHHHHH
Q psy1442 44 NTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCF-SLLHVFWSIVF 113 (186)
Q Consensus 44 ~~~~~~~~lAyvsGlGfGimsg~f~~~nvLads~GPGT~g~~~~s~~ffl~SA~~tl~~-iLLH~fW~VIf 113 (186)
+.|.|--.++.++|+||+++=-+....|-..+..+. +.--+..++.-... ...|..|+.+.
T Consensus 74 ~~~~d~~~~g~a~GlGFa~~En~~Y~~~~~~~~~~~---------~~~~~~~~~~R~~~~~~~H~~~t~i~ 135 (191)
T PF13367_consen 74 DEPMDGLVYGAAVGLGFAIMENILYILNAAEDNGGS---------VQGGLSTAILRGITSVPGHALFTAIF 135 (191)
T ss_pred cCcchhhhhhhHHHHHHHHHHHHHHHHHhhhcccch---------hhhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345566689999999999999998888877665432 11111112222222 57999999886
No 5
>PF08122 NDUF_B12: NADH-ubiquinone oxidoreductase B12 subunit family; InterPro: IPR012576 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of the B12 subunit of NADH:ubiquinone oxidoreductase proteins. The function of this subunit is unclear [].; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=19.60 E-value=55 Score=22.53 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=21.1
Q ss_pred hhhHHHHhhhhhhhhhhHhhcCC
Q psy1442 6 FLGCTMTAFGPVIAMFLTTIMQD 28 (186)
Q Consensus 6 ffGc~fiAfGP~lalF~~tIa~~ 28 (186)
++.+.|-+||..++.|+.+|+=|
T Consensus 23 ~~~~~fpG~~~G~aaf~~~v~~E 45 (57)
T PF08122_consen 23 FFKNMFPGFGIGFAAFAVYVAVE 45 (57)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHH
Confidence 78899999999999999999866
No 6
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=18.36 E-value=5.6e+02 Score=21.20 Aligned_cols=49 Identities=22% Similarity=0.254 Sum_probs=28.4
Q ss_pred ChhhhhhhhcccccC-cccc--cchhHHHHhhhhhhHHHHHHHHHHhhhhhcccC
Q psy1442 28 DPVKKSRGGLQYVSD-RNTM--DNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGP 79 (186)
Q Consensus 28 ~P~rka~~gL~~is~-~~~~--~~~~~lAyvsGlGfGimsg~f~~~nvLads~GP 79 (186)
||..+||+-++.... .+.+ .+...++...++=+. ++|++++-+...+.|
T Consensus 54 ~P~~~a~eli~~~~k~~~~~~~~~~~~~~ld~~L~~~---~if~~~~gi~~~f~~ 105 (206)
T PF06570_consen 54 DPKEYADELIKPLPKPKKKNKNSNPWLMALDNSLLFF---GIFSLLFGIMGFFSP 105 (206)
T ss_pred CHHHHHHHHhccccCCcccccccchHHHHHHHHHHHH---HHHHHHHHHHHHHhh
Confidence 677777777776655 2222 245677777776543 345555555444444
No 7
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=16.39 E-value=6.3e+02 Score=20.99 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=26.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHhh-----------ccccCceeeeehHhHHHHHHHHhhhhhc
Q psy1442 94 TTSIFTCCFSLLHVFWSIVFFR-----------GVEIKNRTLVASVVLSHIFISSYTWYMN 143 (186)
Q Consensus 94 ~SA~~tl~~iLLH~fW~VIfFd-----------g~~kk~~~~i~~V~~sHl~vS~lTll~N 143 (186)
.++=+....+-+||+..|..-+ |..+.+++....+...=++.+.+.+. |
T Consensus 86 ~~sd~~ilaIAihT~l~v~~~~~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~la~i-~ 145 (201)
T PF11710_consen 86 EASDLWILAIAIHTFLIVFRPNWKRKRSKNVEGGLYPYRYWVWVIWILVPLLLASLAFI-G 145 (201)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccccccccccccceEEeeeeeehHHHHHHHHHHHHHHh-c
Confidence 3444444567789986665441 11111222223333556677778888 7
No 8
>PHA02132 hypothetical protein
Probab=16.22 E-value=1.4e+02 Score=22.23 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccccCc
Q psy1442 95 TSIFTCCFSLLHVFWSIVFFRGVEIKN 121 (186)
Q Consensus 95 SA~~tl~~iLLH~fW~VIfFdg~~kk~ 121 (186)
|++--+..+|+| +..|||-++++|
T Consensus 15 s~ia~~vyvl~h---g~affdewr~~~ 38 (86)
T PHA02132 15 SIIAVMVYVLIH---GFAFFDEWRQKR 38 (86)
T ss_pred HHHHHHHHHHHh---hHHHHHHHHcCC
Confidence 344455678888 568999998877
No 9
>PF09971 DUF2206: Predicted membrane protein (DUF2206); InterPro: IPR018701 This family of predicted membrane proteins from archaea has no known function.
Probab=15.59 E-value=2.2e+02 Score=26.34 Aligned_cols=44 Identities=18% Similarity=0.309 Sum_probs=32.5
Q ss_pred hHHHHHHHHhhhhh-----------c------CCCCeeehhHHHHHHHHHHHHHHHhCCCc
Q psy1442 129 VLSHIFISSYTWYM-----------N------SSGLFSVLFIIVFTLFTAMFAYKVIGGSK 172 (186)
Q Consensus 129 ~~sHl~vS~lTll~-----------N------~~~~~~~sl~~~yl~~~~~~Af~~aGgs~ 172 (186)
+.||+..|.+.+.+ | ++..+...++..|.+++..|=-++++|+.
T Consensus 15 i~SHYgtayl~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~ilif~v~~~~WY~yis~~s~ 75 (367)
T PF09971_consen 15 IVSHYGTAYLFIFLLIFAYLLLRLRNLIYLKNNNQRLSFTLILIFIVFAFSWYLYISSSSL 75 (367)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHhccccccceeehhHHHHHHHHHHHHHHHHcccHH
Confidence 78899888877653 2 23456677888888888888778888873
No 10
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=14.95 E-value=3.3e+02 Score=25.42 Aligned_cols=57 Identities=26% Similarity=0.250 Sum_probs=36.6
Q ss_pred chhHHHHhhhhhhHHHHHHHHHHhhhhhcccCccccCCCCCcchhhHhhHHHHHHHHHH
Q psy1442 48 NTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLH 106 (186)
Q Consensus 48 ~~~~lAyvsGlGfGimsg~f~~~nvLads~GPGT~g~~~~s~~ffl~SA~~tl~~iLLH 106 (186)
.++.-|+.+|-|.+- -+-+.++++..+.+|.+.+.+...--||.++++..++-+.+.
T Consensus 136 ~~~~~a~~~G~g~aG--v~~s~~~ii~~a~~~~~~~~~~~a~~YF~~a~~v~l~~i~~~ 192 (437)
T TIGR00939 136 STYSSAVMSGQGLAG--VLTSLAMILVKASGNDSHGLKKSALGYFGTPCVVQLICIVCY 192 (437)
T ss_pred HHHHHHHHhcchhHH--HHHHHHHHHHHHhcCCccchhhhhhhHHHHHHHHHHHHHHHH
Confidence 677889999988753 233455666667777665444444458888877666544444
Done!