Query psy1442
Match_columns 186
No_of_seqs 92 out of 108
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 19:25:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1442.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1442hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wwb_B SEC61gamma, protein tra 17.0 1.2E+02 0.004 20.8 3.2 26 48-73 32-57 (68)
2 3mp7_B Preprotein translocase 16.0 1.5E+02 0.005 19.9 3.4 27 48-74 29-55 (61)
3 2ww9_B Protein transport prote 11.7 2.2E+02 0.0076 20.1 3.5 24 49-72 47-70 (80)
4 1rh5_B Preprotein translocase 10.7 2.2E+02 0.0076 19.7 3.1 24 49-72 34-57 (74)
5 3jyw_S 60S ribosomal protein L 7.9 1E+02 0.0035 19.5 0.4 18 78-95 9-26 (45)
6 4ev6_A Magnesium transport pro 7.2 4.9E+02 0.017 21.7 4.5 41 60-100 282-324 (339)
7 2iub_A CORA, divalent cation t 6.1 4.7E+02 0.016 22.1 3.9 38 61-98 307-346 (363)
8 1q90_L Cytochrome B6F complex 5.8 3E+02 0.01 16.3 1.7 22 2-23 3-24 (32)
9 2wwb_C SEC61BETA, protein tran 5.1 3.4E+02 0.011 19.9 2.0 27 82-108 64-90 (96)
10 1vq8_U 50S ribosomal protein L 5.0 1.3E+02 0.0043 20.6 -0.4 18 78-95 16-33 (66)
No 1
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=16.96 E-value=1.2e+02 Score=20.83 Aligned_cols=26 Identities=8% Similarity=0.243 Sum_probs=19.4
Q ss_pred chhHHHHhhhhhhHHHHHHHHHHhhh
Q psy1442 48 NTYAMAYVSGLGYGTISAAFSLLNVL 73 (186)
Q Consensus 48 ~~~~lAyvsGlGfGimsg~f~~~nvL 73 (186)
+-.++|.+.|+|+.+|-.+=+++.+.
T Consensus 32 Ef~~iak~~~iG~~i~G~IGf~IklI 57 (68)
T 2wwb_B 32 EFQKIAMATAIGFAIMGFIGFFVKLI 57 (68)
T ss_dssp HHHHHHHHSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34489999999999996665555443
No 2
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=16.00 E-value=1.5e+02 Score=19.86 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=19.9
Q ss_pred chhHHHHhhhhhhHHHHHHHHHHhhhh
Q psy1442 48 NTYAMAYVSGLGYGTISAAFSLLNVLD 74 (186)
Q Consensus 48 ~~~~lAyvsGlGfGimsg~f~~~nvLa 74 (186)
+-.++|.+.|+|+.+|-.+=+++.+.-
T Consensus 29 Ef~~iak~~~iG~~i~G~iGf~Ikli~ 55 (61)
T 3mp7_B 29 TYKRAAKITGLGIILIGLIGMLIRIVG 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344899999999999966655555543
No 3
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=11.68 E-value=2.2e+02 Score=20.09 Aligned_cols=24 Identities=8% Similarity=0.163 Sum_probs=18.2
Q ss_pred hhHHHHhhhhhhHHHHHHHHHHhh
Q psy1442 49 TYAMAYVSGLGYGTISAAFSLLNV 72 (186)
Q Consensus 49 ~~~lAyvsGlGfGimsg~f~~~nv 72 (186)
-.++|.++|+||.+|-.+=+++.+
T Consensus 47 f~~iak~t~iG~~imG~IGfiIkL 70 (80)
T 2ww9_B 47 YTKIVKAVGIGFIAVGIIGYAIKL 70 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348999999999999665555443
No 4
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=10.68 E-value=2.2e+02 Score=19.72 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=18.1
Q ss_pred hhHHHHhhhhhhHHHHHHHHHHhh
Q psy1442 49 TYAMAYVSGLGYGTISAAFSLLNV 72 (186)
Q Consensus 49 ~~~lAyvsGlGfGimsg~f~~~nv 72 (186)
-.++|.+.|+|+.+|..+=+++.+
T Consensus 34 F~~iak~~~iG~~imG~IGfiIkl 57 (74)
T 1rh5_B 34 YLAVAKVTALGISLLGIIGYIIHV 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348999999999999665555444
No 5
>3jyw_S 60S ribosomal protein L24(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=7.86 E-value=1e+02 Score=19.54 Aligned_cols=18 Identities=39% Similarity=0.791 Sum_probs=13.6
Q ss_pred cCccccCCCCCcchhhHh
Q psy1442 78 GPGTMGLKGESQYFGFTT 95 (186)
Q Consensus 78 GPGT~g~~~~s~~ffl~S 95 (186)
|.|+++.+.|+..|++.|
T Consensus 9 G~G~~~Vr~Dgkvf~Fcs 26 (45)
T 3jyw_S 9 GRGTLFVRGDSKIFRFQN 26 (45)
T ss_dssp TCCCEECTTTSCCCCCCS
T ss_pred CCCeEEEecCCCEEEEEC
Confidence 678899999988764433
No 6
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=7.16 E-value=4.9e+02 Score=21.67 Aligned_cols=41 Identities=10% Similarity=0.111 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHhhhhhcccCccccCCCC-Ccc-hhhHhhHHHH
Q psy1442 60 YGTISAAFSLLNVLDQVSGPGTMGLKGE-SQY-FGFTTSIFTC 100 (186)
Q Consensus 60 fGimsg~f~~~nvLads~GPGT~g~~~~-s~~-ffl~SA~~tl 100 (186)
+-+++.+|.-.+.++--+|=-.-+.|+- .++ |+++-+++..
T Consensus 282 LTiit~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~m~~ 324 (339)
T 4ev6_A 282 LTMVTTIFAVPMWITGIYGMNFSYLPLANNPQGFWLVMALMVV 324 (339)
T ss_dssp HHHHHHHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCcCCCCCCccCchHHHHHHHHHHH
Confidence 3456677777777777776433344542 344 6665555543
No 7
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=6.14 E-value=4.7e+02 Score=22.06 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhhhhcccCccccCCCC-Ccc-hhhHhhHH
Q psy1442 61 GTISAAFSLLNVLDQVSGPGTMGLKGE-SQY-FGFTTSIF 98 (186)
Q Consensus 61 Gimsg~f~~~nvLads~GPGT~g~~~~-s~~-ffl~SA~~ 98 (186)
-+++++|.-.+.++--+|=-.-+.|+- .++ |+.+-+++
T Consensus 307 Tiit~IflP~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m 346 (363)
T 2iub_A 307 TIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVM 346 (363)
T ss_dssp HHHHHHHHHHHHHTTSCC--------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccCCCCCcccCcHHHHHHHHHH
Confidence 356788888888888876333334442 233 55555554
No 8
>1q90_L Cytochrome B6F complex subunit PETL; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.24.1
Probab=5.75 E-value=3e+02 Score=16.29 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=18.4
Q ss_pred cchhhhhHHHHhhhhhhhhhhH
Q psy1442 2 TYMEFLGCTMTAFGPVIAMFLT 23 (186)
Q Consensus 2 T~~~ffGc~fiAfGP~lalF~~ 23 (186)
|....||-.+.|+.....+|+-
T Consensus 3 tiisYf~fL~~al~~t~~lfiG 24 (32)
T 1q90_L 3 TITSYVGLLIGALVFTLGIYLG 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 5667789999999999999874
No 9
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=5.06 E-value=3.4e+02 Score=19.86 Aligned_cols=27 Identities=22% Similarity=0.301 Sum_probs=20.9
Q ss_pred ccCCCCCcchhhHhhHHHHHHHHHHHH
Q psy1442 82 MGLKGESQYFGFTTSIFTCCFSLLHVF 108 (186)
Q Consensus 82 ~g~~~~s~~ffl~SA~~tl~~iLLH~f 108 (186)
-|++=+++.-...|.......++||++
T Consensus 64 ~GlKV~P~~VLv~sl~Fi~~Vi~Lhi~ 90 (96)
T 2wwb_C 64 PGLKVGPVPVLVMSLLFIASVFMLHIW 90 (96)
T ss_dssp CCCCCSSCSHHHHHHHHHHHHHHHSCS
T ss_pred CceEECCEEehhhHHHHHHHHHHHHHh
Confidence 456666777788888888888999974
No 10
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=5.01 E-value=1.3e+02 Score=20.60 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=13.5
Q ss_pred cCccccCCCCCcchhhHh
Q psy1442 78 GPGTMGLKGESQYFGFTT 95 (186)
Q Consensus 78 GPGT~g~~~~s~~ffl~S 95 (186)
|.|+++.+.|+..|++.|
T Consensus 16 G~G~~~Vr~Dgkvf~Fcs 33 (66)
T 1vq8_U 16 GTGTMFVHKDGATTHFCS 33 (66)
T ss_dssp SCCEEEECTTSCEEEESC
T ss_pred CCceEEEeeCCcEEEEEC
Confidence 678889999998864433
Done!