Query psy1442
Match_columns 186
No_of_seqs 92 out of 108
Neff 4.6
Searched_HMMs 13730
Date Fri Aug 16 19:25:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1442.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1442hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gfoa1 d.3.1.9 (A:762-1109) U 13.8 42 0.0031 24.7 2.2 26 78-103 12-37 (348)
2 d1rh5b_ f.23.28.1 (B:) Preprot 12.9 90 0.0066 19.2 3.2 25 48-72 22-46 (56)
3 d1tdpa_ a.29.8.1 (A:) Carnobac 11.4 40 0.0029 23.5 1.2 38 26-63 16-59 (111)
4 d1l7va_ f.22.1.1 (A:) ABC tran 8.9 3.2E+02 0.023 21.2 6.3 39 45-86 55-95 (324)
5 d1nbfa_ d.3.1.9 (A:) Ubiquitin 4.9 1.9E+02 0.014 21.5 2.6 23 79-101 4-26 (347)
6 d1g9pa_ g.3.6.2 (A:) Atracotox 4.8 1E+02 0.0076 17.8 0.7 8 76-83 31-38 (45)
7 d1vqou1 g.39.1.6 (U:4-56) Ribo 3.2 1E+02 0.0074 18.6 -0.4 18 78-95 13-31 (53)
8 d2iuba2 f.17.3.1 (A:286-349) M 3.0 5.1E+02 0.037 14.8 3.3 36 62-97 11-48 (64)
9 d1xgsa1 a.4.5.25 (A:195-271) M 2.6 65 0.0048 20.4 -2.0 37 16-53 7-47 (77)
10 d1g2oa_ c.56.2.1 (A:) Purine n 2.4 57 0.0041 25.5 -3.0 33 28-61 1-33 (262)
No 1
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.79 E-value=42 Score=24.73 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=22.2
Q ss_pred cCccccCCCCCcchhhHhhHHHHHHH
Q psy1442 78 GPGTMGLKGESQYFGFTTSIFTCCFS 103 (186)
Q Consensus 78 GPGT~g~~~~s~~ffl~SA~~tl~~i 103 (186)
|||-+|+.--...-|+.|.+++|.-+
T Consensus 12 ~~g~vGL~N~GNtCYlNSvLQ~L~~i 37 (348)
T d2gfoa1 12 GPALTGLRNLGNTCYMNSILQCLCNA 37 (348)
T ss_dssp STTCCEECCSSSCHHHHHHHHHHHTC
T ss_pred CCCeECCccCCchhHHHHHHHHHHcC
Confidence 99999999777778999999987653
No 2
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=12.86 E-value=90 Score=19.22 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=19.1
Q ss_pred chhHHHHhhhhhhHHHHHHHHHHhh
Q psy1442 48 NTYAMAYVSGLGYGTISAAFSLLNV 72 (186)
Q Consensus 48 ~~~~lAyvsGlGfGimsg~f~~~nv 72 (186)
+-.+.|.++|+|+-+|-.+=+++.+
T Consensus 22 Ef~~ia~v~~iG~~i~G~IGf~I~l 46 (56)
T d1rh5b_ 22 EYLAVAKVTALGISLLGIIGYIIHV 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4458999999999999666555544
No 3
>d1tdpa_ a.29.8.1 (A:) Carnobacteriocin B2 immunity protein {Carnobacterium piscicola [TaxId: 2751]}
Probab=11.36 E-value=40 Score=23.50 Aligned_cols=38 Identities=18% Similarity=0.130 Sum_probs=29.4
Q ss_pred cCChhhhhhhhcccccC---cc---cccchhHHHHhhhhhhHHH
Q psy1442 26 MQDPVKKSRGGLQYVSD---RN---TMDNTYAMAYVSGLGYGTI 63 (186)
Q Consensus 26 a~~P~rka~~gL~~is~---~~---~~~~~~~lAyvsGlGfGim 63 (186)
-+||--|||+-|+++-+ .+ ...++-.++.|+.|.+|+-
T Consensus 16 Y~~P~vKA~~~L~~li~~~A~kl~~~~d~~aYv~vvt~LS~~IS 59 (111)
T d1tdpa_ 16 YKDPEVKANEFLSKLVVQCAGKLTASNSENSYIEVISLLSRGIS 59 (111)
T ss_dssp HTCHHHHSCHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHH
T ss_pred hcCccccccHHHHHHHHHhhhccccccCcchHHHHHHHHhcchH
Confidence 36788899999998877 22 2456678999999999983
No 4
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=8.87 E-value=3.2e+02 Score=21.17 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=31.2
Q ss_pred cccchhHHHHhhhhhhHHHHHHHHHH--hhhhhcccCccccCCC
Q psy1442 45 TMDNTYAMAYVSGLGYGTISAAFSLL--NVLDQVSGPGTMGLKG 86 (186)
Q Consensus 45 ~~~~~~~lAyvsGlGfGimsg~f~~~--nvLads~GPGT~g~~~ 86 (186)
.+..|-..+...|-+.|+...+++-+ |-|+| |++.|+.+
T Consensus 55 iRlPR~l~a~l~Ga~La~sG~~lQ~~~rNpLA~---P~ilGiss 95 (324)
T d1l7va_ 55 IRLPRTLAVLLVGAALAISGAVMQALFENPLAE---PGLLGVSN 95 (324)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC---TTTTTHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC---chHHHhhh
Confidence 34557899999999999998888866 67776 77888764
No 5
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.91 E-value=1.9e+02 Score=21.52 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=19.7
Q ss_pred CccccCCCCCcchhhHhhHHHHH
Q psy1442 79 PGTMGLKGESQYFGFTTSIFTCC 101 (186)
Q Consensus 79 PGT~g~~~~s~~ffl~SA~~tl~ 101 (186)
||-+|+.--+..-|+.|.++.|.
T Consensus 4 ~G~vGL~NlGNTCy~NSvLQ~L~ 26 (347)
T d1nbfa_ 4 TGYVGLKNQGATCYMNSLLQTLF 26 (347)
T ss_dssp SSCCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCcCCeeCCcchHHHHHHHHHH
Confidence 78899987777899999999874
No 6
>d1g9pa_ g.3.6.2 (A:) Atracotoxin-hv2a {Funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=4.84 E-value=1e+02 Score=17.79 Aligned_cols=8 Identities=63% Similarity=1.203 Sum_probs=6.0
Q ss_pred cccCcccc
Q psy1442 76 VSGPGTMG 83 (186)
Q Consensus 76 s~GPGT~g 83 (186)
+.|||.+|
T Consensus 31 ssgpglvg 38 (45)
T d1g9pa_ 31 SSGPGLVG 38 (45)
T ss_dssp CCCSSCSS
T ss_pred ccCCchhh
Confidence 67888873
No 7
>d1vqou1 g.39.1.6 (U:4-56) Ribosomal protein L24e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=3.19 E-value=1e+02 Score=18.65 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=13.1
Q ss_pred cCccccCCCCCcch-hhHh
Q psy1442 78 GPGTMGLKGESQYF-GFTT 95 (186)
Q Consensus 78 GPGT~g~~~~s~~f-fl~S 95 (186)
|-|+++...|...| |+.|
T Consensus 13 G~G~~~Vr~Dg~v~~F~ss 31 (53)
T d1vqou1 13 GTGTMFVHKDGATTHFCSS 31 (53)
T ss_dssp TCCEEEECTTSCEEEESCH
T ss_pred CCCEEEEecCCCEEEEeCH
Confidence 56788999888875 4444
No 8
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=2.99 E-value=5.1e+02 Score=14.83 Aligned_cols=36 Identities=11% Similarity=0.204 Sum_probs=17.1
Q ss_pred HHHHHHHHHhhhhhcccCccccCCCCC-cc-hhhHhhH
Q psy1442 62 TISAAFSLLNVLDQVSGPGTMGLKGES-QY-FGFTTSI 97 (186)
Q Consensus 62 imsg~f~~~nvLads~GPGT~g~~~~s-~~-ffl~SA~ 97 (186)
+++.+|.-.+.++--+|=-.-+.|+.+ +. |+.+-++
T Consensus 11 ~it~iflP~t~i~gifGMN~~~~P~~~~~~~~~~~~~~ 48 (64)
T d2iuba2 11 IIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAV 48 (64)
T ss_dssp HHHHHHHHHHHHTTSCC--------------CHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCCccHHHHHHHHH
Confidence 567888888999988874433445433 33 5544443
No 9
>d1xgsa1 a.4.5.25 (A:195-271) Methionine aminopeptidase, insert domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=2.62 E-value=65 Score=20.35 Aligned_cols=37 Identities=14% Similarity=0.102 Sum_probs=23.3
Q ss_pred hhhhhhhHhhcCChh--hhhhhhcccccC--cccccchhHHH
Q psy1442 16 PVIAMFLTTIMQDPV--KKSRGGLQYVSD--RNTMDNTYAMA 53 (186)
Q Consensus 16 P~lalF~~tIa~~P~--rka~~gL~~is~--~~~~~~~~~lA 53 (186)
|..-+|-+ ..++|+ +.|.+-|+.|.+ .+.|-+++-+.
T Consensus 7 ~~~~Iy~~-~~~~plr~~~ar~ll~~I~~~f~tLPFs~RwL~ 47 (77)
T d1xgsa1 7 PPTLIYMY-VRDVPVRVAQARFLLAKIKREYGTLPFAYRWLQ 47 (77)
T ss_dssp EEEEEEEE-CCCCCCSSHHHHHHHHHHHHHTTTSCEESGGGT
T ss_pred CCceEEEE-eCCCCCCCHHHHHHHHHHHHHCCCcceeHHHHh
Confidence 33444443 356776 567778888877 67776665543
No 10
>d1g2oa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=2.43 E-value=57 Score=25.53 Aligned_cols=33 Identities=33% Similarity=0.363 Sum_probs=22.9
Q ss_pred ChhhhhhhhcccccCcccccchhHHHHhhhhhhH
Q psy1442 28 DPVKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYG 61 (186)
Q Consensus 28 ~P~rka~~gL~~is~~~~~~~~~~lAyvsGlGfG 61 (186)
||..++++.-+.|.+. .+..++.++.+.|=|.|
T Consensus 1 ~~~~~~~eaa~~i~~r-~~~~~p~i~iIlGSGL~ 33 (262)
T d1g2oa_ 1 DPDELARRAAQVIADR-TGIGEHDVAVVLGSGWL 33 (262)
T ss_dssp CHHHHHHHHHHHHHHH-HSCSCCSEEEEECTTCG
T ss_pred CHHHHHHHHHHHHHHh-cCCCCCCEEEEecCCch
Confidence 7887888777777762 22246688999888863
Done!